Citrus Sinensis ID: 031506

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MRDVGSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILLSS
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEEEEEccccccccEEEEEEEcccccccEEEccHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHcccccccEEEEEEEccccccccEEEEEEEccccccccEEcHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHccccccEEEEEEcccEEccccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrdvgsdkdedemtdkhMTTVSQHyfvdesdkpsfSIAIIENMKEEYGLFVWPCSVILAEYVWQqryrfsganvvelgagtslpglvaakvgsnvtltddsNRIEVLKNMRRVCEMNKLNCRLlmtslppshicsrvlqdqssLRLIIIEVGIILLSS
Flexible Loop (DISEMBL)
mrdvgsdkdedemtdkHMTTVSqhyfvdesdkPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAkvgsnvtltddsnrieVLKNMRRVCEMNKLNCRLLMTSLPPSHICSRvlqdqsslrLIIIEVGIILLSS
Low Complexity Region (SEG)
MRDVGSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILLSS
Disordered region (IsUnstruct)
***********************HYFVD****PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILL**
Disordered Region (DISOPRED)
****************HMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILLSS
Disordered Region (DISEMBL)
**************DKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILLSS
Disordered Region (DISPRO)
****************HMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILLSS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRDVGSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q6DJF8	234	Methyltransferase-like pr	N/A	no	0.569	0.384	0.422	2e-18
A2AA28	253	Methyltransferase-like pr	yes	no	0.588	0.367	0.397	9e-17
Q5RJL2	225	Methyltransferase-like pr	yes	no	0.569	0.4	0.4	3e-16
Q86XA0	190	Methyltransferase-like pr	yes	no	0.449	0.373	0.464	4e-15
A6QP81	257	Protein-lysine methyltran	no	no	0.537	0.330	0.354	7e-07
Q8WXB1	218	Protein-lysine methyltran	no	no	0.373	0.270	0.423	1e-06
Q8CDZ2	244	Protein-lysine methyltran	no	no	0.493	0.319	0.345	3e-06
Q5VZV1	264	Protein-lysine methyltran	no	no	0.506	0.303	0.341	5e-06
A4IGU3	215	Protein-lysine methyltran	no	no	0.386	0.283	0.403	6e-06
Q8R1C6	393	Methyltransferase-like pr	no	no	0.487	0.195	0.369	8e-06

>sp|Q6DJF8|MET23_XENLA Methyltransferase-like protein 23 OS=Xenopus laevis GN=mettl23 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 60/90 (66%)

Query: 30  SDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA 89
            D+    + I E +  +YG++VWPC+V+LA+Y+W  R   +   V+E+GAG SLPG++AA
Sbjct: 22  KDEQKMRVTIPEVLNCQYGMYVWPCAVVLAQYLWYHRKNLADKRVLEVGAGVSLPGILAA 81

Query: 90  KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119
           K G+ V L+D +   + L+N RR C+MN +
Sbjct: 82  KCGAKVILSDSAEMPQCLENCRRSCKMNNI 111

Probable methyltransferase.
Xenopus laevis (taxid: 8355)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|A2AA28|MET23_MOUSE Methyltransferase-like protein 23 OS=Mus musculus GN=Mettl23 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 58/93 (62%)

Query: 27  VDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGL 86
           V   ++    + + + +  +YG++VWPC+V+LA+Y+W  R    G  V+E+GAG SLPG+
Sbjct: 42  VPGGNRAVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRSLPGKAVLEVGAGVSLPGI 101

Query: 87  VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119
           +AAK G+ V L+D S     L   R+ C+MN L
Sbjct: 102 LAAKCGAKVILSDSSEFPHCLDICRQSCQMNNL 134

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RJL2|MET23_RAT Methyltransferase-like protein 23 OS=Rattus norvegicus GN=Mettl23 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)

Query: 30  SDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA 89
           +D     + + + +  +YG++VWPC+V+LA+Y+W  R    G  V+E+GAG SLPG++AA
Sbjct: 17  ADPTVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRVLPGKAVLEIGAGVSLPGILAA 76

Query: 90  KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119
           K G+ VTL+D       L    + C+MN L
Sbjct: 77  KCGAKVTLSDSPELPHCLDICWQSCQMNNL 106

Probable methyltransferase.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q86XA0|MET23_HUMAN Methyltransferase-like protein 23 OS=Homo sapiens GN=METTL23 PE=2 SV=3

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 49/71 (69%)

Query: 49  LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK 108
           ++VWPC+V+LA+Y+W  R    G  ++E+GAG SLPG++AAK G+ V L+D S     L+
Sbjct: 1   MYVWPCAVVLAQYLWFHRRSLPGKAILEIGAGVSLPGILAAKCGAEVILSDSSELPHCLE 60

Query: 109 NMRRVCEMNKL 119
             R+ C+MN L
Sbjct: 61  VCRQSCQMNNL 71

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6QP81|MT21C_BOVIN Protein-lysine methyltransferase METTL21C OS=Bos taurus GN=METTL21C PE=2 SV=1

 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 8/93 (8%)

Query: 39  IIENMKEEYGLFVWPCSVILAEYVWQ--QRYRFSGANVVELGAGTSLPGLVAAKVGSNVT 96
           +I+   E YG  VWP ++ L +Y+ +  +     GA ++E+GAG  L  +VA+ +G+ VT
Sbjct: 72  VIQESIESYGAVVWPGAMALCQYLEEHTEELNLRGAKILEIGAGPGLVSIVASILGAQVT 131

Query: 97  LTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSLP 129
            TD     +VL N++     N LNC    T LP
Sbjct: 132 ATD---LPDVLGNLQYNLLKNTLNC---TTYLP 158

Probable methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query: 51  VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKN 109
           VW  +++L+ Y+        G + VELGAGT L G+VAA +G++VT+TD    +E LK+
Sbjct: 46  VWDAAIVLSTYLEMGAVELRGRSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKS 104

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8CDZ2|MT21E_MOUSE Protein-lysine methyltransferase METTL21E OS=Mus musculus GN=Mettl21e PE=2 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 6/84 (7%)

Query: 44  KEEYGLFVWPCSVILAEYV--WQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDS 101
           K+ YG FVWP +++L  ++    ++Y     NV+E+GAGT L  +VA+ +G+ V  TD  
Sbjct: 61  KDCYGAFVWPSALVLCYFLETHAKQYNMVDKNVIEIGAGTGLVSIVASLLGARVIATDLP 120

Query: 102 NRIEVLKNMR-RVCEMNKLNCRLL 124
              E+L N++  +    K+ C+ L
Sbjct: 121 ---ELLGNLQYNISRNTKMKCKHL 141

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5VZV1|MT21C_HUMAN Protein-lysine methyltransferase METTL21C OS=Homo sapiens GN=METTL21C PE=1 SV=1

 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 39  IIENMKEEYGLFVWPCSVILAEYVWQ--QRYRFSGANVVELGAGTSLPGLVAAKVGSNVT 96
           +I+   E YG  VWP ++ L +Y+ +  +   F  A ++E+GAG  L  +VA+ +G+ VT
Sbjct: 79  VIQESIESYGAVVWPGAMALCQYLEEHAEELNFQDAKILEIGAGPGLVSIVASILGAQVT 138

Query: 97  LTDDSNRIEVLKNMRRVCEMNKLNC 121
            TD     +VL N++     N L C
Sbjct: 139 ATD---LPDVLGNLQYNLLKNTLQC 160

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 51  VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK-N 109
           VW  +++L  Y+  +      ++V+ELGAGT L G+VAA +G+ VT+TD    +E L+ N
Sbjct: 46  VWDAALVLCMYLESEGIHLQNSSVIELGAGTGLVGIVAALLGAQVTITDRDLAMEFLRMN 105

Query: 110 MR 111
           +R
Sbjct: 106 VR 107

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8R1C6|MET22_MOUSE Methyltransferase-like protein 22 OS=Mus musculus GN=Mettl22 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 45  EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI 104
           E+ G  VW  +++LA+Y+  +R  F G  V+ELGAGT L  +VAA +   V  TD     
Sbjct: 169 EDVGKQVWRGALLLADYILFRRDLFQGCTVLELGAGTGLASIVAATMAHTVYCTD----- 223

Query: 105 EVLKNMRRVCEMN-KLNCRLLMTS 127
            V  ++  +C+ N  LN  L  T 
Sbjct: 224 -VGTDLLAMCQRNVALNSHLTATG 246

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
356495346	203	PREDICTED: methyltransferase-like protei	0.765	0.596	0.701	4e-46
255580627	238	conserved hypothetical protein [Ricinus	0.753	0.5	0.708	2e-44
449434120	242	PREDICTED: methyltransferase-like protei	0.746	0.487	0.686	2e-44
356540836	212	PREDICTED: methyltransferase-like protei	0.727	0.542	0.720	4e-44
449517136	242	PREDICTED: methyltransferase-like protei	0.746	0.487	0.677	5e-44
225431332	236	PREDICTED: methyltransferase-like protei	0.759	0.508	0.672	4e-42
357483907	212	hypothetical protein MTR_5g022860 [Medic	0.759	0.566	0.639	4e-40
297836997	194	predicted protein [Arabidopsis lyrata su	0.670	0.546	0.728	2e-39
42571989	196	Putative methyltransferase family protei	0.702	0.566	0.687	7e-37
30696907	159	Putative methyltransferase family protei	0.702	0.698	0.687	1e-36

>gi|356495346|ref|XP_003516539.1| PREDICTED: methyltransferase-like protein 23-like [Glycine max]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/124 (70%), Positives = 106/124 (85%), Gaps = 3/124 (2%)

Query: 1   MRDVGSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAE 60
           M D   ++ +D +T   MTTVSQH+F D+S+ PSFSI+IIENMKE+YGLFVWPCSV+LAE
Sbjct: 1   MEDWNDEQCDDTLT---MTTVSQHFFGDDSETPSFSISIIENMKEDYGLFVWPCSVVLAE 57

Query: 61  YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120
           Y+WQ ++RFSGA VVELGAGTSLPGLVAAK+G+ VTLTDDS R+EVL NMRRVC++NKL 
Sbjct: 58  YIWQHKHRFSGATVVELGAGTSLPGLVAAKLGARVTLTDDSTRLEVLDNMRRVCDLNKLE 117

Query: 121 CRLL 124
           C +L
Sbjct: 118 CNVL 121

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580627|ref|XP_002531136.1| conserved hypothetical protein [Ricinus communis] gi|223529249|gb|EEF31221.1| conserved hypothetical protein [Ricinus communis]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 103/120 (85%), Gaps = 1/120 (0%)

Query: 5   GSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQ 64
           G D DE E + ++M+TVS H F D  +KP+FS++ IENMKEEYGLFVWPCSVILAEY+WQ
Sbjct: 3   GKDDDE-EPSHRNMSTVSHHVFGDGLEKPAFSVSTIENMKEEYGLFVWPCSVILAEYIWQ 61

Query: 65  QRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL 124
           QR RFSGA+VVELGAGTSLPGL AAK+GS+VTLTDDSN +EVL N+R+VC +NKL C++L
Sbjct: 62  QRERFSGADVVELGAGTSLPGLAAAKLGSHVTLTDDSNSLEVLDNIRKVCYLNKLKCKVL 121

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434120|ref|XP_004134844.1| PREDICTED: methyltransferase-like protein 23-like [Cucumis sativus]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 101/118 (85%)

Query: 7   DKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQR 66
           D D D+  D  +TT S H F D++ K  FSIAIIENM+EEYGL+VWPCS+ILAEYVWQQ+
Sbjct: 10  DGDPDKPADPSLTTTSHHVFEDDAGKSVFSIAIIENMEEEYGLYVWPCSIILAEYVWQQK 69

Query: 67  YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL 124
            RF+GANVVELGAGTSLPGLVAAK+G++VTLTDD+NR+EVL N+R+VC++N LNC ++
Sbjct: 70  ARFAGANVVELGAGTSLPGLVAAKLGASVTLTDDANRVEVLDNIRKVCDLNNLNCNIM 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540836|ref|XP_003538890.1| PREDICTED: methyltransferase-like protein 23-like [Glycine max]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/118 (72%), Positives = 102/118 (86%), Gaps = 3/118 (2%)

Query: 7   DKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQR 66
           D ++D +T   MTTVSQH F D+S+ PSF I+IIENMK+EYGLF+WPCSV+LAEYVWQ +
Sbjct: 5   DWNDDSLT---MTTVSQHCFRDDSEAPSFYISIIENMKDEYGLFLWPCSVVLAEYVWQHK 61

Query: 67  YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL 124
           +RFSGANVVELGAGTSLP LVAAK+G+ VTLTDDS R+EVL NMRRVC++NKL C +L
Sbjct: 62  HRFSGANVVELGAGTSLPDLVAAKLGACVTLTDDSTRLEVLNNMRRVCDLNKLECNVL 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517136|ref|XP_004165602.1| PREDICTED: methyltransferase-like protein 23-like [Cucumis sativus]

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 80/118 (67%), Positives = 101/118 (85%)

Query: 7   DKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQR 66
           D D D+  D  +TT S H F D++ K  FSIAIIENM+EEYGL++WPCS+ILAEYVWQQ+
Sbjct: 10  DGDPDKPADPSLTTTSHHVFEDDAGKSVFSIAIIENMEEEYGLYMWPCSIILAEYVWQQK 69

Query: 67  YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL 124
            RF+GANVVELGAGTSLPGLVAAK+G++VTLTDD+NR+EVL N+R+VC++N LNC ++
Sbjct: 70  ARFAGANVVELGAGTSLPGLVAAKLGASVTLTDDANRVEVLDNIRKVCDLNNLNCNIM 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431332|ref|XP_002277720.1| PREDICTED: methyltransferase-like protein 23 [Vitis vinifera] gi|296084695|emb|CBI25837.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 104/125 (83%), Gaps = 5/125 (4%)

Query: 5   GSDKDE----DEMTDKHMTTVSQHYFVDESDKP-SFSIAIIENMKEEYGLFVWPCSVILA 59
           GSD+DE       +D+HMTT S+H+F +  D   +FSI IIE+MKE+YGLFVWPCSV+LA
Sbjct: 3   GSDEDEPAGASSQSDQHMTTTSRHHFGNARDSGDAFSITIIESMKEDYGLFVWPCSVVLA 62

Query: 60  EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119
           EYVWQQR RF GA+VVELGAGTSLPGLVAAK+GS+VTLTD++ R+EVL NMRRVC++N+L
Sbjct: 63  EYVWQQRSRFLGASVVELGAGTSLPGLVAAKLGSDVTLTDNAVRLEVLDNMRRVCDLNEL 122

Query: 120 NCRLL 124
            C +L
Sbjct: 123 KCEVL 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483907|ref|XP_003612240.1| hypothetical protein MTR_5g022860 [Medicago truncatula] gi|355513575|gb|AES95198.1| hypothetical protein MTR_5g022860 [Medicago truncatula]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/122 (63%), Positives = 98/122 (80%), Gaps = 2/122 (1%)

Query: 3   DVGSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYV 62
           D   + D D      M+T+SQH F D+S+  + +I+IIENM E+YGL+VWP +VIL EY+
Sbjct: 5   DRNEESDSDNTATMTMSTISQHNFNDDSE--TLTISIIENMSEDYGLYVWPSAVILGEYI 62

Query: 63  WQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122
           WQ+++RFSGANVVELGAGT LPGLVAAKVG+NVTLTDDS R+EVL NMRRVC++NKL C 
Sbjct: 63  WQEKHRFSGANVVELGAGTCLPGLVAAKVGANVTLTDDSTRLEVLDNMRRVCDLNKLECN 122

Query: 123 LL 124
           +L
Sbjct: 123 VL 124

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836997|ref|XP_002886380.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332221|gb|EFH62639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/107 (72%), Positives = 94/107 (87%), Gaps = 1/107 (0%)

Query: 19  TTVSQHYFVDESD-KPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVEL 77
           TT+SQH F  + D + S SI++IEN+KEEYGLFVWPCSVILAEYVWQQR RF  ++V+EL
Sbjct: 5   TTISQHDFYGDGDSETSISISVIENLKEEYGLFVWPCSVILAEYVWQQRSRFRHSSVLEL 64

Query: 78  GAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL 124
           GAGTSLPGLVAAKVG+NVTLTDD+++ EVL NMRRVCE+NKLNC ++
Sbjct: 65  GAGTSLPGLVAAKVGANVTLTDDASKPEVLDNMRRVCELNKLNCNVM 111

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571989|ref|NP_974085.1| Putative methyltransferase family protein [Arabidopsis thaliana] gi|332196036|gb|AEE34157.1| Putative methyltransferase family protein [Arabidopsis thaliana]

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 77/112 (68%), Positives = 90/112 (80%), Gaps = 1/112 (0%)

Query: 13  MTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGA 72
           M     TT+SQH F    D  +  I+IIEN+KEEYGLFVWPCSVILAEYVWQ R RF  +
Sbjct: 1   MMTTTTTTISQHNFYGAGDSET-CISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDS 59

Query: 73  NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL 124
           +++ELGAGTSLPGLVAAKVG+NVTLTDD+ + EVL NMRRVCE+NKLNC +L
Sbjct: 60  SILELGAGTSLPGLVAAKVGANVTLTDDATKPEVLDNMRRVCELNKLNCNVL 111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696907|ref|NP_850970.1| Putative methyltransferase family protein [Arabidopsis thaliana] gi|26452591|dbj|BAC43379.1| unknown protein [Arabidopsis thaliana] gi|117958334|gb|ABK59663.1| At1g63855 [Arabidopsis thaliana] gi|332196037|gb|AEE34158.1| Putative methyltransferase family protein [Arabidopsis thaliana]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/112 (68%), Positives = 90/112 (80%), Gaps = 1/112 (0%)

Query: 13  MTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGA 72
           M     TT+SQH F    D  +  I+IIEN+KEEYGLFVWPCSVILAEYVWQ R RF  +
Sbjct: 1   MMTTTTTTISQHNFYGAGDSET-CISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDS 59

Query: 73  NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL 124
           +++ELGAGTSLPGLVAAKVG+NVTLTDD+ + EVL NMRRVCE+NKLNC +L
Sbjct: 60  SILELGAGTSLPGLVAAKVGANVTLTDDATKPEVLDNMRRVCELNKLNCNVL 111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:504956172	196	AT1G63855 "AT1G63855" [Arabido	0.664	0.535	0.716	3.9e-37
MGI|MGI:1921569	253	Mettl23 "methyltransferase lik	0.702	0.438	0.366	1.8e-16
RGD|1306284	225	Mettl23 "methyltransferase lik	0.683	0.48	0.366	9.8e-16
UNIPROTKB|Q86XA0	190	METTL23 "Methyltransferase-lik	0.531	0.442	0.435	5.4e-15
ZFIN|ZDB-GENE-060825-19	223	mettl21d "methyltransferase li	0.620	0.439	0.347	5.8e-11
UNIPROTKB|A4FV42	218	METTL21A "Protein-lysine methy	0.373	0.270	0.457	1.2e-08
RGD|1311824	218	Mettl21a "methyltransferase li	0.373	0.270	0.423	3.5e-08
UNIPROTKB|A6QP81	257	METTL21C "Protein-lysine methy	0.506	0.311	0.352	3.9e-08
MGI|MGI:2685837	244	Mettl21e "methyltransferase li	0.531	0.344	0.351	4.2e-08
UNIPROTKB|Q8WXB1	218	METTL21A "Protein-lysine methy	0.373	0.270	0.423	4.6e-08

TAIR|locus:504956172 AT1G63855 "AT1G63855" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 76/106 (71%), Positives = 89/106 (83%)

Query:    19 TTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELG 78
             TT+SQH F    D  +  I+IIEN+KEEYGLFVWPCSVILAEYVWQ R RF  ++++ELG
Sbjct:     7 TTISQHNFYGAGDSET-CISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDSSILELG 65

Query:    79 AGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL 124
             AGTSLPGLVAAKVG+NVTLTDD+ + EVL NMRRVCE+NKLNC +L
Sbjct:    66 AGTSLPGLVAAKVGANVTLTDDATKPEVLDNMRRVCELNKLNCNVL 111

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1921569 Mettl23 "methyltransferase like 23" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 41/112 (36%), Positives = 66/112 (58%)

Query:    27 VDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGL 86
             V   ++    + + + +  +YG++VWPC+V+LA+Y+W  R    G  V+E+GAG SLPG+
Sbjct:    42 VPGGNRAVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRSLPGKAVLEVGAGVSLPGI 101

Query:    87 VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSLPPSHICSRVL 138
             +AAK G+ V L+D S     L   R+ C+MN L  ++ +  L   HI   +L
Sbjct:   102 LAAKCGAKVILSDSSEFPHCLDICRQSCQMNNLP-QVEVVGLTWGHISKDIL 152

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

RGD|1306284 Mettl23 "methyltransferase like 23" [Rattus norvegicus (taxid:10116)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 40/109 (36%), Positives = 63/109 (57%)

Query:    30 SDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA 89
             +D     + + + +  +YG++VWPC+V+LA+Y+W  R    G  V+E+GAG SLPG++AA
Sbjct:    17 ADPTVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRVLPGKAVLEIGAGVSLPGILAA 76

Query:    90 KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSLPPSHICSRVL 138
             K G+ VTL+D       L    + C+MN L  ++ +  L   HI    L
Sbjct:    77 KCGAKVTLSDSPELPHCLDICWQSCQMNNLP-QVQIVGLTWGHISKDTL 124

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q86XA0 METTL23 "Methyltransferase-like protein 23" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 37/85 (43%), Positives = 54/85 (63%)

Query:    49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK 108
             ++VWPC+V+LA+Y+W  R    G  ++E+GAG SLPG++AAK G+ V L+D S     L+
Sbjct:     1 MYVWPCAVVLAQYLWFHRRSLPGKAILEIGAGVSLPGILAAKCGAEVILSDSSELPHCLE 60

Query:   109 NMRRVCEMNKLNCRLLMTSLPPSHI 133
               R+ C+MN L   L +  L   HI
Sbjct:    61 VCRQSCQMNNLP-HLQVVGLTWGHI 84

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 40/115 (34%), Positives = 69/115 (60%)

Query:    22 SQHYFVDESDKPSFSIA-IIENMKEEYGLFVWPCSVILAEYVWQQRY--------RFSGA 72
             S+ YFV E +K   S+  + +  K + G  VW  +++L++Y+  +++         +S  
Sbjct:     7 SEDYFVREIEKNDGSVLRMYQCSKGDVGCVVWDAAIVLSKYLETEQFCSIGSGVSMWSSK 66

Query:    73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRLLMT 126
             N++ELGAGT L GLVAA +G+NVTLTD       L++++ + ++N K N +L+ T
Sbjct:    67 NIIELGAGTGLVGLVAASLGANVTLTD-------LEDLQPLLQLNIKKNQQLIHT 114

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|A4FV42 METTL21A "Protein-lysine methyltransferase METTL21A" [Bos taurus (taxid:9913)]

 Score = 131 (51.2 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query:    51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKN 109
             VW  +V+LA Y+        G + VELGAGT L G+VAA +G++VT+TD    +E LK+
Sbjct:    46 VWDAAVVLATYLEMGTVELRGCSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKS 104

GO:0018022 "peptidyl-lysine methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0006479 "protein methylation" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

RGD|1311824 Mettl21a "methyltransferase like 21A" [Rattus norvegicus (taxid:10116)]

 Score = 127 (49.8 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query:    51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKN 109
             VW  +++L+ Y+        G + VELGAGT L G+VAA +G++VT+TD    +E LK+
Sbjct:    46 VWDAAIVLSTYLEMGAVELRGCSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKS 104

GO:0006479 "protein methylation" evidence=ISO

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

UNIPROTKB|A6QP81 METTL21C "Protein-lysine methyltransferase METTL21C" [Bos taurus (taxid:9913)]

 Score = 129 (50.5 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 30/85 (35%), Positives = 48/85 (56%)

Query:    39 IIENMKEEYGLFVWPCSVILAEYVWQ--QRYRFSGANVVELGAGTSLPGLVAAKVGSNVT 96
             +I+   E YG  VWP ++ L +Y+ +  +     GA ++E+GAG  L  +VA+ +G+ VT
Sbjct:    72 VIQESIESYGAVVWPGAMALCQYLEEHTEELNLRGAKILEIGAGPGLVSIVASILGAQVT 131

Query:    97 LTDDSNRIEVLKNMRRVCEMNKLNC 121
              TD     +VL N++     N LNC
Sbjct:   132 ATDLP---DVLGNLQYNLLKNTLNC 153

GO:0018022 "peptidyl-lysine methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0006479 "protein methylation" evidence=ISS

MGI|MGI:2685837 Mettl21e "methyltransferase like 21E" [Mus musculus (taxid:10090)]

 Score = 128 (50.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 32/91 (35%), Positives = 52/91 (57%)

Query:    37 IAIIENMKEEYGLFVWPCSVILAEYV--WQQRYRFSGANVVELGAGTSLPGLVAAKVGSN 94
             I I E  K+ YG FVWP +++L  ++    ++Y     NV+E+GAGT L  +VA+ +G+ 
Sbjct:    55 IQITEG-KDCYGAFVWPSALVLCYFLETHAKQYNMVDKNVIEIGAGTGLVSIVASLLGAR 113

Query:    95 VTLTDDSNRIEVLKNMR-RVCEMNKLNCRLL 124
             V  TD     E+L N++  +    K+ C+ L
Sbjct:   114 VIATDLP---ELLGNLQYNISRNTKMKCKHL 141

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q8WXB1 METTL21A "Protein-lysine methyltransferase METTL21A" [Homo sapiens (taxid:9606)]

 Score = 126 (49.4 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query:    51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKN 109
             VW  +++L+ Y+        G + VELGAGT L G+VAA +G++VT+TD    +E LK+
Sbjct:    46 VWDAAIVLSTYLEMGAVELRGRSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKS 104

GO:0016021 "integral to membrane" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0006479 "protein methylation" evidence=IDA

GO:0018022 "peptidyl-lysine methylation" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
pfam10294	170	pfam10294, Methyltransf_16, Putative methyltransfe	4e-11

>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 6/83 (7%)

Query: 32  KPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQ----QRYRFSGANVVELGAGTSLPGLV 87
             S  + I E+     G  VW  +V+L++Y+           SG NV+ELG+GT L G+ 
Sbjct: 2   LDSPELKIEEDTGNGIGGHVWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIA 61

Query: 88  AAKV--GSNVTLTDDSNRIEVLK 108
            A +  G++VT+TD    IE++K
Sbjct: 62  VALLLPGASVTITDLEEAIELMK 84

Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.94
COG3897	218	Predicted methyltransferase [General function pred	99.72
KOG3201	201	consensus Uncharacterized conserved protein [Funct	99.7
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.67
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.66
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	99.63
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.61
COG4123	248	Predicted O-methyltransferase [General function pr	99.56
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.47
COG2890	280	HemK Methylase of polypeptide chain release factor	99.45
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.44
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.44
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.43
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.43
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.42
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.41
PRK11207	197	tellurite resistance protein TehB; Provisional	99.39
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.38
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.38
PRK14967	223	putative methyltransferase; Provisional	99.38
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.37
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.35
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.34
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.33
PRK12335	287	tellurite resistance protein TehB; Provisional	99.32
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.31
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.3
PRK14968	188	putative methyltransferase; Provisional	99.3
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.29
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.29
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.28
PLN02244	340	tocopherol O-methyltransferase	99.27
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.27
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.26
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.26
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.25
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.24
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.24
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.23
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.2
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.2
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.2
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.2
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.19
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.19
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.18
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.18
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.17
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.17
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.17
PLN02336	475	phosphoethanolamine N-methyltransferase	99.17
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.17
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.17
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.17
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.17
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.16
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.16
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.15
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.15
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.15
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.14
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.14
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.14
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.13
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.13
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.12
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.12
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.11
PLN02672	1082	methionine S-methyltransferase	99.1
PRK08317	241	hypothetical protein; Provisional	99.1
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.1
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.09
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.09
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.09
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.07
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.06
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.06
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.06
PRK05785	226	hypothetical protein; Provisional	99.04
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.03
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.02
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.02
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.01
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.0
PRK06202	232	hypothetical protein; Provisional	99.0
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.0
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.0
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.99
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.99
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.99
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.99
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.99
PHA03412	241	putative methyltransferase; Provisional	98.98
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.98
PRK04148	134	hypothetical protein; Provisional	98.97
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.97
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.97
KOG2904	328	consensus Predicted methyltransferase [General fun	98.97
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.95
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.94
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.94
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.94
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.93
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.93
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.92
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.91
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.91
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.91
PHA03411	279	putative methyltransferase; Provisional	98.91
PRK04266	226	fibrillarin; Provisional	98.89
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.88
PLN02490	340	MPBQ/MSBQ methyltransferase	98.88
PRK07402	196	precorrin-6B methylase; Provisional	98.86
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.85
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.85
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.84
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.84
KOG2920	282	consensus Predicted methyltransferase [General fun	98.83
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.81
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.79
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.78
PRK06922	677	hypothetical protein; Provisional	98.78
PLN02336	475	phosphoethanolamine N-methyltransferase	98.77
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.77
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.75
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.75
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.73
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.73
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.73
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.72
KOG1271	227	consensus Methyltransferases [General function pre	98.7
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.69
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.69
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.69
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.67
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.65
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.63
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.63
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.62
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.61
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.6
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.59
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.58
TIGR03438	301	probable methyltransferase. This model represents	98.58
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.58
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.58
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.57
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.54
PRK04457	262	spermidine synthase; Provisional	98.54
PTZ00146	293	fibrillarin; Provisional	98.53
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.53
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.51
PLN03075	296	nicotianamine synthase; Provisional	98.49
PRK00811	283	spermidine synthase; Provisional	98.49
PLN02476	278	O-methyltransferase	98.47
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.43
KOG3010	261	consensus Methyltransferase [General function pred	98.4
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.4
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.39
COG4122	219	Predicted O-methyltransferase [General function pr	98.38
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.38
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.37
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.36
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.36
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.34
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.33
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.32
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.3
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.27
PRK03612	521	spermidine synthase; Provisional	98.24
PRK01581	374	speE spermidine synthase; Validated	98.24
KOG4300	252	consensus Predicted methyltransferase [General fun	98.23
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.23
TIGR00438	188	rrmJ cell division protein FtsJ.	98.23
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.2
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.19
PRK10742	250	putative methyltransferase; Provisional	98.18
COG2520	341	Predicted methyltransferase [General function pred	98.17
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.14
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.1
PLN02366	308	spermidine synthase	98.08
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.07
KOG2497	262	consensus Predicted methyltransferase [General fun	98.06
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.04
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.03
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.03
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.01
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.96
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.94
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.94
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.92
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.89
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.85
PHA01634	156	hypothetical protein	97.79
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.79
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.76
PF13679	141	Methyltransf_32: Methyltransferase domain	97.67
PLN02823	336	spermine synthase	97.65
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.63
COG4076	252	Predicted RNA methylase [General function predicti	97.58
KOG2361	264	consensus Predicted methyltransferase [General fun	97.56
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.53
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.48
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.39
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.32
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.25
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.25
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.2
PRK00536	262	speE spermidine synthase; Provisional	97.17
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.17
KOG2899	288	consensus Predicted methyltransferase [General fun	97.15
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.13
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.1
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.09
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.04
COG2521	287	Predicted archaeal methyltransferase [General func	97.04
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.98
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.96
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	96.91
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.86
KOG2940	325	consensus Predicted methyltransferase [General fun	96.84
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	96.8
KOG2730	263	consensus Methylase [General function prediction o	96.62
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.6
COG1568	354	Predicted methyltransferases [General function pre	96.57
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.55
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	96.53
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.42
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.37
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.33
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.25
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.24
KOG2078	495	consensus tRNA modification enzyme [RNA processing	96.15
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	95.98
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.86
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	95.79
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	95.65
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	95.64
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.51
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.46
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	95.45
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.42
PLN02232	160	ubiquinone biosynthesis methyltransferase	95.38
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	95.32
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.29
KOG4058	199	consensus Uncharacterized conserved protein [Funct	94.94
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.91
COG2384	226	Predicted SAM-dependent methyltransferase [General	94.86
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	94.7
PRK11524	284	putative methyltransferase; Provisional	94.67
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	94.6
PRK13699	227	putative methylase; Provisional	94.55
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.52
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	94.22
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	94.19
COG1255	129	Uncharacterized protein conserved in archaea [Func	94.15
KOG1227	351	consensus Putative methyltransferase [General func	93.99
COG4262	508	Predicted spermidine synthase with an N-terminal m	93.87
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	93.75
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	93.72
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	93.68
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	93.03
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	93.03
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	92.94
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	92.75
COG1565	370	Uncharacterized conserved protein [Function unknow	92.56
COG0286	489	HsdM Type I restriction-modification system methyl	91.78
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	91.58
KOG2912	419	consensus Predicted DNA methylase [Function unknow	91.52
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	90.92
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	90.9
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	90.84
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	90.67
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	90.39
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	90.33
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	90.16
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	89.75
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	89.11
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	88.85
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.71
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	87.86
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	87.6
PRK08862	227	short chain dehydrogenase; Provisional	87.02
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	86.48
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	86.46
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	86.0
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	85.45
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	85.35
COG3392	330	Adenine-specific DNA methylase [DNA replication, r	84.92
PRK09242	257	tropinone reductase; Provisional	84.76
PRK05867	253	short chain dehydrogenase; Provisional	84.46
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	83.28
PRK12548	289	shikimate 5-dehydrogenase; Provisional	82.24
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	82.12
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	81.79
PRK06172	253	short chain dehydrogenase; Provisional	81.52
COG0863	302	DNA modification methylase [DNA replication, recom	81.25
KOG3115	249	consensus Methyltransferase-like protein [General	80.81
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	80.31
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	80.23
PRK06139	330	short chain dehydrogenase; Provisional	80.08

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.94  E-value=7.5e-27  Score=176.18  Aligned_cols=121  Identities=33%  Similarity=0.473  Sum_probs=79.5

Q ss_pred             ceEEEEeccCCCCCceEecchHHHHHHHHHhc------ccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHH
Q 031506           34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQ------RYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIE  105 (158)
Q Consensus        34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~------~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~  105 (158)
                      ..+|.|.|....++|.++||++.+|++|+.++      ...+++++|||||||+|++|+.+++.  +.+|++||+++   
T Consensus         3 ~~~l~i~e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~---   79 (173)
T PF10294_consen    3 NKTLQIEEDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE---   79 (173)
T ss_dssp             --------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----
T ss_pred             ccccccccccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---
Confidence            45689999988899999999999999999984      56778999999999999999999998  56999999986   


Q ss_pred             HHHHHHHHHHHcC----CcceEEEcCC------------CCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          106 VLKNMRRVCEMNK----LNCRLLMTSL------------PPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       106 ~l~~~~~n~~~n~----~~~~~~~~d~------------~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .+++++.|++.|+    .++.+...+|            +||+|+ +||+|+.+.+++|++|+..++..
T Consensus        80 ~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~  148 (173)
T PF10294_consen   80 VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKP  148 (173)
T ss_dssp             HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT
T ss_pred             hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCC
Confidence            7999999999987    2345555554            699999 99999999999999999998864

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=99.72  E-value=6.3e-18  Score=128.50  Aligned_cols=109  Identities=19%  Similarity=0.300  Sum_probs=99.3

Q ss_pred             CCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceE
Q 031506           45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRL  123 (158)
Q Consensus        45 ~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~  123 (158)
                      +.++.+.|.+++.+|+|+..++..+++++|||+|+|+|+++|.+++.|+ .|+++|+.+.  .+.+++.|++.|+..+.+
T Consensus        54 Ppfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~--~~~ai~lNa~angv~i~~  131 (218)
T COG3897          54 PPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW--LEQAIRLNAAANGVSILF  131 (218)
T ss_pred             chHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChH--HHHHhhcchhhccceeEE
Confidence            4588999999999999999999999999999999999999999999998 8999999965  889999999999988777


Q ss_pred             EEcCC-----CCcEEE-ecCCCCCccHHHHHHHHHHHh
Q 031506          124 LMTSL-----PPSHIC-SRVLQDQSSLRLIIIEVGIIL  155 (158)
Q Consensus       124 ~~~d~-----~fD~Ii-~d~iy~~~~~~~ll~tl~~ll  155 (158)
                      ...|.     .||+|+ .|++|....+..++..+..+.
T Consensus       132 ~~~d~~g~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~  169 (218)
T COG3897         132 THADLIGSPPAFDLLLAGDLFYNHTEADRLIPWKDRLA  169 (218)
T ss_pred             eeccccCCCcceeEEEeeceecCchHHHHHHHHHHHHH
Confidence            65543     899999 999999999999999776554

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=8.5e-18  Score=124.50  Aligned_cols=110  Identities=24%  Similarity=0.356  Sum_probs=93.5

Q ss_pred             CceEecchHHHHHHHHHhcccCCCCCeEEEeccC-CCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCC----
Q 031506           47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL----  119 (158)
Q Consensus        47 ~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~G-tGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~----  119 (158)
                      +..++||+.+.|+.++++++..+.+++|||||.| ||+.|+++|....  .|.+||.++.  .+++.++-...|..    
T Consensus         6 gnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~--svrnv~ki~~~n~~s~~t   83 (201)
T KOG3201|consen    6 GNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEE--SVRNVEKIRNSNMASSLT   83 (201)
T ss_pred             CcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHH--HHHHHHHHHhcccccccc
Confidence            3468999999999999999999999999999999 9999999988754  8999999975  88888887777732    


Q ss_pred             cceEEEcCC----------CCcEEE-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506          120 NCRLLMTSL----------PPSHIC-SRVLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       120 ~~~~~~~d~----------~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                      ++.+..+.+          .||+|+ +||+|..+.+++|++|+..+|.++
T Consensus        84 sc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~  133 (201)
T KOG3201|consen   84 SCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPS  133 (201)
T ss_pred             eehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcc
Confidence            233333321          899999 999999999999999999999764

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.67  E-value=4.7e-16  Score=126.25  Aligned_cols=101  Identities=22%  Similarity=0.302  Sum_probs=82.3

Q ss_pred             ceEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHH
Q 031506           34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~  112 (158)
                      ...|.|.+.+..++|.|  |++....+++.+.  ..++++|||+|||||+++++++++|+ +|+++|+++.  +++.+++
T Consensus       129 ~~~I~idPg~AFGTG~H--~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~--Av~~a~~  202 (295)
T PF06325_consen  129 EIVIEIDPGMAFGTGHH--PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPL--AVEAARE  202 (295)
T ss_dssp             SEEEEESTTSSS-SSHC--HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCH--HHHHHHH
T ss_pred             cEEEEECCCCcccCCCC--HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHH--HHHHHHH
Confidence            56788888888888887  8999999999875  45678999999999999999999999 8999999986  9999999


Q ss_pred             HHHHcCCcceEEEc---C---CCCcEEEecCCCC
Q 031506          113 VCEMNKLNCRLLMT---S---LPPSHICSRVLQD  140 (158)
Q Consensus       113 n~~~n~~~~~~~~~---d---~~fD~Ii~d~iy~  140 (158)
                      |+..|++..++...   +   .+||+|+++++..
T Consensus       203 N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI~~~  236 (295)
T PF06325_consen  203 NAELNGVEDRIEVSLSEDLVEGKFDLVVANILAD  236 (295)
T ss_dssp             HHHHTT-TTCEEESCTSCTCCS-EEEEEEES-HH
T ss_pred             HHHHcCCCeeEEEEEecccccccCCEEEECCCHH
Confidence            99999988766432   2   3899999888654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=1.1e-15  Score=123.83  Aligned_cols=115  Identities=18%  Similarity=0.250  Sum_probs=89.5

Q ss_pred             ceEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHH
Q 031506           34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~  112 (158)
                      .+.|+|.+.+..++|++  |.+..-.+++.+..  .++++|||+|||||+++|+++++|+ +|+++|+++.  +++.++.
T Consensus       130 ~~~i~lDPGlAFGTG~H--pTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~--AV~aa~e  203 (300)
T COG2264         130 ELNIELDPGLAFGTGTH--PTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQ--AVEAARE  203 (300)
T ss_pred             ceEEEEccccccCCCCC--hhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHH--HHHHHHH
Confidence            56688888777888886  88888888887743  4889999999999999999999999 6999999976  9999999


Q ss_pred             HHHHcCCc--ceEEEc-------CCCCcEEEecCCCCCccHHHHHHHHHHHhc
Q 031506          113 VCEMNKLN--CRLLMT-------SLPPSHICSRVLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       113 n~~~n~~~--~~~~~~-------d~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~  156 (158)
                      |+..|++.  .++...       ..+||+|+++++=  +-+..|...+..+++
T Consensus       204 Na~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA--~vl~~La~~~~~~lk  254 (300)
T COG2264         204 NARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA--EVLVELAPDIKRLLK  254 (300)
T ss_pred             HHHHcCCchhhhcccccchhhcccCcccEEEehhhH--HHHHHHHHHHHHHcC
Confidence            99999987  333333       2389999988843  223345555554443

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=99.63  E-value=3.4e-15  Score=118.09  Aligned_cols=119  Identities=26%  Similarity=0.470  Sum_probs=91.5

Q ss_pred             EEEEeccCCCCCceEecchHHHHHHHHHhccc------CCC-----CCeEEEeccCCCHHHHHHhh-cCCEEEEEecCCh
Q 031506           36 SIAIIENMKEEYGLFVWPCSVILAEYVWQQRY------RFS-----GANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNR  103 (158)
Q Consensus        36 ~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~------~~~-----~~~vLELG~GtGl~~i~~a~-~g~~v~~tD~~~~  103 (158)
                      +..+......+..+.+|+++-.++.++..++.      ...     ..+|||||+|||++|+.+|. .+++|..||... 
T Consensus        41 ~~~~~~~~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-  119 (248)
T KOG2793|consen   41 KTVIESGLEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-  119 (248)
T ss_pred             eeecccccccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchh-
Confidence            35555656678999999999999999987655      222     34699999999999999888 677999999986 


Q ss_pred             HHHHHHHHHHHHHcCC-------cceEEEcCC-----------C-CcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          104 IEVLKNMRRVCEMNKL-------NCRLLMTSL-----------P-PSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       104 ~~~l~~~~~n~~~n~~-------~~~~~~~d~-----------~-fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                        .+.+++.|...|+.       .+.+...+|           . ||+|+ +||+|.++.++.|+.+++.++..
T Consensus       120 --~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~  191 (248)
T KOG2793|consen  120 --VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAK  191 (248)
T ss_pred             --hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhc
Confidence              45555555444332       233333322           4 89999 99999999999999999999863

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.61  E-value=7.9e-15  Score=110.04  Aligned_cols=99  Identities=25%  Similarity=0.292  Sum_probs=77.4

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC-
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL-  128 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~-  128 (158)
                      +++.+|++++...    ++.+|||+|||+|.+|+.+++.+.  +|+++|+++.  +++.+++|++.|++. +++...|. 
T Consensus        18 ~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~--a~~~a~~n~~~n~~~~v~~~~~d~~   91 (170)
T PF05175_consen   18 AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPD--ALELAKRNAERNGLENVEVVQSDLF   91 (170)
T ss_dssp             HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHH--HHHHHHHHHHHTTCTTEEEEESSTT
T ss_pred             HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHH--HHHHHHHHHHhcCcccccccccccc
Confidence            5788999988875    567899999999999999999876  5999999965  999999999999987 66666554 


Q ss_pred             ------CCcEEEecCCCCCcc------HHHHHHHHHHHhcC
Q 031506          129 ------PPSHICSRVLQDQSS------LRLIIIEVGIILLS  157 (158)
Q Consensus       129 ------~fD~Ii~d~iy~~~~------~~~ll~tl~~ll~~  157 (158)
                            +||+|+++|+++...      ...+++.....|.+
T Consensus        92 ~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~  132 (170)
T PF05175_consen   92 EALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP  132 (170)
T ss_dssp             TTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE
T ss_pred             ccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccC
Confidence                  799999777765543      46666666665543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.56  E-value=4.6e-14  Score=111.71  Aligned_cols=112  Identities=18%  Similarity=0.220  Sum_probs=88.3

Q ss_pred             EEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHH
Q 031506           37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVC  114 (158)
Q Consensus        37 ~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g-~~v~~tD~~~~~~~l~~~~~n~  114 (158)
                      +.|.|   ...|++.--++..|+.|+...    ..++|||||||+|++++++|++ . ++|+++|+++.  +.+.+++|+
T Consensus        18 ~~I~q---~~~~~~~~~DaiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~--~a~~A~~nv   88 (248)
T COG4123          18 FFIIQ---DRCGFRYGTDAILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEE--AAEMAQRNV   88 (248)
T ss_pred             eEEEe---CCCccccccHHHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHH--HHHHHHHHH
Confidence            66777   456778788999999998542    3779999999999999999987 4 59999999964  999999999


Q ss_pred             HHcCCcceEE--EcCC----------CCcEEEecCCCCCcc-------------------HHHHHHHHHHHhcC
Q 031506          115 EMNKLNCRLL--MTSL----------PPSHICSRVLQDQSS-------------------LRLIIIEVGIILLS  157 (158)
Q Consensus       115 ~~n~~~~~~~--~~d~----------~fD~Ii~d~iy~~~~-------------------~~~ll~tl~~ll~~  157 (158)
                      +.|++..++.  ..|.          +||+|+|+|+|+...                   ++++++.-+.+|++
T Consensus        89 ~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~  162 (248)
T COG4123          89 ALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP  162 (248)
T ss_pred             HhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC
Confidence            9999875543  3332          599999999988654                   55666666666554

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.47  E-value=1.4e-13  Score=107.94  Aligned_cols=87  Identities=15%  Similarity=0.185  Sum_probs=78.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-------C-CCCcEEE-ecCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-------S-LPPSHIC-SRVLQ  139 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-------d-~~fD~Ii-~d~iy  139 (158)
                      +.+++|||+|||-|+++..+|+.|++|+++|.++.  +++.++..+..+++.+++...       + .+||+|+ .+++-
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~--~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEK--PIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChH--HHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            68999999999999999999999999999999976  999999999999988655433       1 3999999 99999


Q ss_pred             CCccHHHHHHHHHHHhcC
Q 031506          140 DQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll~~  157 (158)
                      |.++.+.+++.+..++.+
T Consensus       136 Hv~dp~~~~~~c~~lvkP  153 (243)
T COG2227         136 HVPDPESFLRACAKLVKP  153 (243)
T ss_pred             ccCCHHHHHHHHHHHcCC
Confidence            999999999999999875

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=3.8e-13  Score=108.69  Aligned_cols=88  Identities=23%  Similarity=0.239  Sum_probs=68.1

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcCC-
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTSL-  128 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d~-  128 (158)
                      |.+..|.+.+......... +|||||||||.+++.+++.+.  +|+++|+|+.  +++.+++|++.|++ +......|+ 
T Consensus        94 ~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~--Al~~A~~Na~~~~l~~~~~~~~dlf  170 (280)
T COG2890          94 PDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPD--ALALARENAERNGLVRVLVVQSDLF  170 (280)
T ss_pred             CchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHH--HHHHHHHHHHHcCCccEEEEeeecc
Confidence            5677777776522111112 799999999999999998875  9999999975  99999999999996 222222244 


Q ss_pred             -----CCcEEEecCCCCCcc
Q 031506          129 -----PPSHICSRVLQDQSS  143 (158)
Q Consensus       129 -----~fD~Ii~d~iy~~~~  143 (158)
                           +||+|+++|+|-+..
T Consensus       171 ~~~~~~fDlIVsNPPYip~~  190 (280)
T COG2890         171 EPLRGKFDLIVSNPPYIPAE  190 (280)
T ss_pred             cccCCceeEEEeCCCCCCCc
Confidence                 799999999999876

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.44  E-value=1.4e-12  Score=98.32  Aligned_cols=81  Identities=23%  Similarity=0.272  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----  128 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----  128 (158)
                      .+..|.+++..    .++.+|||+|||+|..++.+++.+.+|+++|+++.  +++.+++|++.++..+++...|.     
T Consensus         7 d~~~l~~~l~~----~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~d~~~~~~   80 (179)
T TIGR00537         7 DSLLLEANLRE----LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPF--AVKELRENAKLNNVGLDVVMTDLFKGVR   80 (179)
T ss_pred             cHHHHHHHHHh----cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHHHcCCceEEEEcccccccC
Confidence            34566666543    34578999999999999999998889999999965  99999999998887665554443     


Q ss_pred             -CCcEEEecCCCC
Q 031506          129 -PPSHICSRVLQD  140 (158)
Q Consensus       129 -~fD~Ii~d~iy~  140 (158)
                       +||+|+++++|+
T Consensus        81 ~~fD~Vi~n~p~~   93 (179)
T TIGR00537        81 GKFDVILFNPPYL   93 (179)
T ss_pred             CcccEEEECCCCC
Confidence             799999777775

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.44  E-value=2.7e-12  Score=103.92  Aligned_cols=116  Identities=17%  Similarity=0.298  Sum_probs=86.4

Q ss_pred             ceEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHH
Q 031506           34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~  112 (158)
                      ...+.|.+.+..++|.+  +.+....+++...  ..++++|||+|||+|.+++.+++.|+ +|+++|+++.  +++.+++
T Consensus       127 ~~~i~ldpg~aFgtG~h--~tt~l~l~~l~~~--~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~--al~~a~~  200 (288)
T TIGR00406       127 ALIIMLDPGLAFGTGTH--PTTSLCLEWLEDL--DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPL--AVESARK  200 (288)
T ss_pred             cEEEEECCCCcccCCCC--HHHHHHHHHHHhh--cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHH--HHHHHHH
Confidence            45677777666667655  7776666666553  23678999999999999999988887 8999999975  9999999


Q ss_pred             HHHHcCCcceE--EEc------CCCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          113 VCEMNKLNCRL--LMT------SLPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       113 n~~~n~~~~~~--~~~------d~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      |+..|++..++  ...      +.+||+|+++++.  ..+..++..+..+|.+
T Consensus       201 n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~--~~l~~ll~~~~~~Lkp  251 (288)
T TIGR00406       201 NAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA--EVIKELYPQFSRLVKP  251 (288)
T ss_pred             HHHHcCCCcceEEEecccccccCCCceEEEEecCH--HHHHHHHHHHHHHcCC
Confidence            99999875332  221      2389999977653  3455677777777665

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.3e-12  Score=99.16  Aligned_cols=94  Identities=23%  Similarity=0.263  Sum_probs=71.2

Q ss_pred             CCCceEecchHHHHHHHHHh---cccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc
Q 031506           45 EEYGLFVWPCSVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN  120 (158)
Q Consensus        45 ~~~g~~vW~~~~~la~~l~~---~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~  120 (158)
                      +..++-.++.---++.++..   ...++.++.|+|||||||.+|+.++.+|+ .|+++|+++  ++++.+++|+......
T Consensus        17 p~~~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~--~a~ei~r~N~~~l~g~   94 (198)
T COG2263          17 PKLGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDP--EALEIARANAEELLGD   94 (198)
T ss_pred             CCccceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCH--HHHHHHHHHHHhhCCc
Confidence            33444444444444444433   34677899999999999999999999997 899999996  4999999999997766


Q ss_pred             ceEEEcCC-----CCcEEEecCCCC
Q 031506          121 CRLLMTSL-----PPSHICSRVLQD  140 (158)
Q Consensus       121 ~~~~~~d~-----~fD~Ii~d~iy~  140 (158)
                      +++...|.     +||.++.||+|-
T Consensus        95 v~f~~~dv~~~~~~~dtvimNPPFG  119 (198)
T COG2263          95 VEFVVADVSDFRGKFDTVIMNPPFG  119 (198)
T ss_pred             eEEEEcchhhcCCccceEEECCCCc
Confidence            77666643     899888666654

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.43  E-value=1.8e-12  Score=99.28  Aligned_cols=88  Identities=15%  Similarity=0.103  Sum_probs=71.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------CCCcEEE-ecCCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------LPPSHIC-SRVLQD  140 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------~~fD~Ii-~d~iy~  140 (158)
                      .++.+|||+|||+|..++.++++|.+|+++|+++.  |++.+++++..+++++.....|       .+||+|+ +.++++
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~--~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~  106 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPA--SIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFMF  106 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHH--HHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEeccccc
Confidence            35679999999999999999999999999999965  9999999988877665443332       2799999 777765


Q ss_pred             C--ccHHHHHHHHHHHhcCC
Q 031506          141 Q--SSLRLIIIEVGIILLSS  158 (158)
Q Consensus       141 ~--~~~~~ll~tl~~ll~~~  158 (158)
                      .  +..+.+++.+..+|.++
T Consensus       107 ~~~~~~~~~l~~~~~~Lkpg  126 (195)
T TIGR00477       107 LQAGRVPEIIANMQAHTRPG  126 (195)
T ss_pred             CCHHHHHHHHHHHHHHhCCC
Confidence            4  46788899998888753

Part of a tellurite-reducing operon tehA and tehB

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.42  E-value=3.7e-12  Score=101.03  Aligned_cols=116  Identities=20%  Similarity=0.323  Sum_probs=87.4

Q ss_pred             ceEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHH
Q 031506           34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~  112 (158)
                      ...+.|.+.+..++|.  ++.+..+.+++...  ..++.+|||+|||+|.+++.+++.|+ +|+++|+++.  +++.+++
T Consensus        87 ~~~i~i~p~~afgtg~--h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~--~l~~A~~  160 (250)
T PRK00517         87 EINIELDPGMAFGTGT--HPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQ--AVEAARE  160 (250)
T ss_pred             eEEEEECCCCccCCCC--CHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHH--HHHHHHH
Confidence            4557777777777776  57888888877753  24678999999999999999998887 5999999965  9999999


Q ss_pred             HHHHcCCcceEEE--cCCCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          113 VCEMNKLNCRLLM--TSLPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       113 n~~~n~~~~~~~~--~d~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      |+..|++...+..  .+.+||+|+++...  +.+..++..+...|.+
T Consensus       161 n~~~~~~~~~~~~~~~~~~fD~Vvani~~--~~~~~l~~~~~~~Lkp  205 (250)
T PRK00517        161 NAELNGVELNVYLPQGDLKADVIVANILA--NPLLELAPDLARLLKP  205 (250)
T ss_pred             HHHHcCCCceEEEccCCCCcCEEEEcCcH--HHHHHHHHHHHHhcCC
Confidence            9999987533332  23479999976542  3355666777666654

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.41  E-value=5.2e-12  Score=105.84  Aligned_cols=100  Identities=15%  Similarity=0.159  Sum_probs=73.1

Q ss_pred             cchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc----ceEEE
Q 031506           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN----CRLLM  125 (158)
Q Consensus        52 W~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~----~~~~~  125 (158)
                      =.++.+|.+++-.    ..+.+|||||||+|.+|+.+++++  .+|+++|.++.  +++.+++|++.|+..    +.+..
T Consensus       214 D~GtrllL~~lp~----~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~--Av~~A~~N~~~n~~~~~~~v~~~~  287 (378)
T PRK15001        214 DIGARFFMQHLPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPM--AVASSRLNVETNMPEALDRCEFMI  287 (378)
T ss_pred             ChHHHHHHHhCCc----ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCcccCceEEEEE
Confidence            3566666666532    224589999999999999988874  59999999965  999999999988642    34433


Q ss_pred             cC-------CCCcEEEecCCCCCcc------HHHHHHHHHHHhcC
Q 031506          126 TS-------LPPSHICSRVLQDQSS------LRLIIIEVGIILLS  157 (158)
Q Consensus       126 ~d-------~~fD~Ii~d~iy~~~~------~~~ll~tl~~ll~~  157 (158)
                      .|       .+||+|+++|+|+...      ...+++.....|.+
T Consensus       288 ~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp  332 (378)
T PRK15001        288 NNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI  332 (378)
T ss_pred             ccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc
Confidence            32       2799999999988642      35566666655543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.39  E-value=4e-12  Score=97.52  Aligned_cols=88  Identities=18%  Similarity=0.180  Sum_probs=71.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-------CCCcEEE-ecCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-------LPPSHIC-SRVLQ  139 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-------~~fD~Ii-~d~iy  139 (158)
                      .++.+|||+|||+|..++.++++|.+|+++|+++.  |++.+++++..+++. +.+...|       .+||+|+ +.+++
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~--~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~  106 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPM--SIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLM  106 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchh
Confidence            35679999999999999999999999999999965  999999998887654 3433332       2799999 88887


Q ss_pred             CCc--cHHHHHHHHHHHhcCC
Q 031506          140 DQS--SLRLIIIEVGIILLSS  158 (158)
Q Consensus       140 ~~~--~~~~ll~tl~~ll~~~  158 (158)
                      +.+  ..+.+++.+..+|.++
T Consensus       107 ~~~~~~~~~~l~~i~~~Lkpg  127 (197)
T PRK11207        107 FLEAKTIPGLIANMQRCTKPG  127 (197)
T ss_pred             hCCHHHHHHHHHHHHHHcCCC
Confidence            643  5788999998888753

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.38  E-value=4.6e-12  Score=104.96  Aligned_cols=99  Identities=20%  Similarity=0.173  Sum_probs=74.9

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC---
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---  127 (158)
                      .++..|.+.+..    ....+|||+|||+|.+++.+++++.  +|+++|+++.  |++.+++|++.|++..++...|   
T Consensus       183 ~gt~lLl~~l~~----~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~--Al~~A~~nl~~n~l~~~~~~~D~~~  256 (342)
T PRK09489        183 VGSQLLLSTLTP----HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAA--ALESSRATLAANGLEGEVFASNVFS  256 (342)
T ss_pred             HHHHHHHHhccc----cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCEEEEccccc
Confidence            345555555532    2234799999999999998888753  8999999965  9999999999998876655443   


Q ss_pred             ---CCCcEEEecCCCCC------ccHHHHHHHHHHHhcC
Q 031506          128 ---LPPSHICSRVLQDQ------SSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 ---~~fD~Ii~d~iy~~------~~~~~ll~tl~~ll~~  157 (158)
                         .+||+|+++|+||.      ...+.+++.....|.+
T Consensus       257 ~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp  295 (342)
T PRK09489        257 DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS  295 (342)
T ss_pred             ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc
Confidence               38999998888774      3456777777777664

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.38  E-value=3.4e-12  Score=88.28  Aligned_cols=86  Identities=22%  Similarity=0.273  Sum_probs=64.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhh--cCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC--------CCcEEE-ec
Q 031506           70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL--------PPSHIC-SR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~--~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~--------~fD~Ii-~d  136 (158)
                      ++.+|||||||+|..++.+++  .+++|+++|+++.  |++.+++|+...+.  ++++...|.        +||+|+ ..
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPE--MLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHH--HHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence            467999999999999999998  7889999999965  99999999965544  344444443        899999 55


Q ss_pred             -CCC-C--CccHHHHHHHHHHHhcC
Q 031506          137 -VLQ-D--QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       137 -~iy-~--~~~~~~ll~tl~~ll~~  157 (158)
                       +.. +  .+....+++.+...|.+
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~L~p  103 (112)
T PF12847_consen   79 FTLHFLLPLDERRRVLERIRRLLKP  103 (112)
T ss_dssp             GSGGGCCHHHHHHHHHHHHHHHEEE
T ss_pred             CccccccchhHHHHHHHHHHHhcCC
Confidence             222 1  23456677777766653

...

>PRK14967 putative methyltransferase; Provisional

Probab=99.38  E-value=7.9e-12  Score=97.44  Aligned_cols=87  Identities=20%  Similarity=0.197  Sum_probs=69.3

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC----
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS----  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d----  127 (158)
                      ..+..+++++.... ..++.+|||+|||+|.+++.+++.+. +|+++|+++.  +++.+++|+..++..+.+...|    
T Consensus        20 ~ds~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~--~l~~a~~n~~~~~~~~~~~~~d~~~~   96 (223)
T PRK14967         20 EDTQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRR--AVRSARLNALLAGVDVDVRRGDWARA   96 (223)
T ss_pred             CcHHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHH--HHHHHHHHHHHhCCeeEEEECchhhh
Confidence            46778888876532 23567999999999999999888876 9999999975  9999999999887765555443    


Q ss_pred             ---CCCcEEEecCCCCCc
Q 031506          128 ---LPPSHICSRVLQDQS  142 (158)
Q Consensus       128 ---~~fD~Ii~d~iy~~~  142 (158)
                         .+||+|+++++|...
T Consensus        97 ~~~~~fD~Vi~npPy~~~  114 (223)
T PRK14967         97 VEFRPFDVVVSNPPYVPA  114 (223)
T ss_pred             ccCCCeeEEEECCCCCCC
Confidence               279999988887754

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.37  E-value=6.1e-12  Score=97.02  Aligned_cols=83  Identities=18%  Similarity=0.106  Sum_probs=66.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---------CCCcEEEecC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---------LPPSHICSRV  137 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---------~~fD~Ii~d~  137 (158)
                      ..+.+|||||||+|.+++.++.++ .+|+++|.++.  +++.+++|++.+++. +.+...|         .+||+|++||
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~--a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP  129 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRA--VAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP  129 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHH--HHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC
Confidence            456799999999999999654444 59999999965  999999999998763 4444332         2599999999


Q ss_pred             CCCCccHHHHHHHHHH
Q 031506          138 LQDQSSLRLIIIEVGI  153 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~  153 (158)
                      +|.....+.+++.+..
T Consensus       130 Py~~g~~~~~l~~l~~  145 (199)
T PRK10909        130 PFRKGLLEETINLLED  145 (199)
T ss_pred             CCCCChHHHHHHHHHH
Confidence            9999888888887765

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=4.3e-12  Score=102.66  Aligned_cols=84  Identities=26%  Similarity=0.290  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCcc-eEEEcCC--
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNC-RLLMTSL--  128 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~-~~~~~d~--  128 (158)
                      ++.+|.+-+    ....+.+|||||||.|.+|+.+++...  +++++|.+..  +++.+|+|+..|++.. .++..+.  
T Consensus       146 GS~lLl~~l----~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~--Av~~ar~Nl~~N~~~~~~v~~s~~~~  219 (300)
T COG2813         146 GSRLLLETL----PPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNAR--AVESARKNLAANGVENTEVWASNLYE  219 (300)
T ss_pred             HHHHHHHhC----CccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHH--HHHHHHHhHHHcCCCccEEEEecccc
Confidence            444444433    333344999999999999999999874  9999999975  9999999999999876 4554433  


Q ss_pred             ----CCcEEEecCCCCCcc
Q 031506          129 ----PPSHICSRVLQDQSS  143 (158)
Q Consensus       129 ----~fD~Ii~d~iy~~~~  143 (158)
                          +||+|+++|++|...
T Consensus       220 ~v~~kfd~IisNPPfh~G~  238 (300)
T COG2813         220 PVEGKFDLIISNPPFHAGK  238 (300)
T ss_pred             cccccccEEEeCCCccCCc
Confidence                899999888877543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.34  E-value=4.6e-12  Score=104.20  Aligned_cols=88  Identities=18%  Similarity=0.281  Sum_probs=73.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEc--------CCCCcEEE-ecC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMT--------SLPPSHIC-SRV  137 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~--------d~~fD~Ii-~d~  137 (158)
                      .++.+|||+|||+|.++..+++.|++|+++|.++.  +++.++++...++.  .+.+...        +.+||+|+ .++
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~--~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v  207 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDK--NVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV  207 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence            46779999999999999999999999999999965  99999988776543  2333332        23899999 999


Q ss_pred             CCCCccHHHHHHHHHHHhcCC
Q 031506          138 LQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~ll~~~  158 (158)
                      ++|..+...+++.+..+|+++
T Consensus       208 LeHv~d~~~~L~~l~r~LkPG  228 (322)
T PLN02396        208 IEHVANPAEFCKSLSALTIPN  228 (322)
T ss_pred             HHhcCCHHHHHHHHHHHcCCC
Confidence            999999999999999988753

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.33  E-value=1.9e-11  Score=93.46  Aligned_cols=83  Identities=17%  Similarity=0.177  Sum_probs=67.5

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC------------CCcE
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL------------PPSH  132 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~------------~fD~  132 (158)
                      .+.+.+||||+||||.+|+.++++|+ +|+++|.++.  +++.+++|++.+++.  +.+...|.            .||+
T Consensus        47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~--a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dv  124 (189)
T TIGR00095        47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRK--ANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNV  124 (189)
T ss_pred             hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceE
Confidence            45788999999999999999999998 8999999975  999999999999864  34433321            3677


Q ss_pred             EEecCCCCCccHHHHHHHHH
Q 031506          133 ICSRVLQDQSSLRLIIIEVG  152 (158)
Q Consensus       133 Ii~d~iy~~~~~~~ll~tl~  152 (158)
                      |+.||+|.....+.++..+.
T Consensus       125 v~~DPPy~~~~~~~~l~~l~  144 (189)
T TIGR00095       125 IYLDPPFFNGALQALLELCE  144 (189)
T ss_pred             EEECcCCCCCcHHHHHHHHH
Confidence            77999999888877776553

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.32  E-value=1.1e-11  Score=100.08  Aligned_cols=87  Identities=23%  Similarity=0.237  Sum_probs=71.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------CCCcEEE-ecCCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------LPPSHIC-SRVLQD  140 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------~~fD~Ii-~d~iy~  140 (158)
                      .++.+|||+|||+|..++.+++.|.+|+++|.++.  +++.+++|++.+++.+++...|       .+||+|+ ..++++
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~--ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~  196 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQ--SLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF  196 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence            34569999999999999999999999999999965  9999999999888766654443       3799999 777776


Q ss_pred             C--ccHHHHHHHHHHHhcC
Q 031506          141 Q--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       141 ~--~~~~~ll~tl~~ll~~  157 (158)
                      .  +..+.+++.+...|.+
T Consensus       197 l~~~~~~~~l~~~~~~Lkp  215 (287)
T PRK12335        197 LNRERIPAIIKNMQEHTNP  215 (287)
T ss_pred             CCHHHHHHHHHHHHHhcCC
Confidence            4  4678889888887765

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.31  E-value=1.7e-12  Score=102.89  Aligned_cols=86  Identities=19%  Similarity=0.216  Sum_probs=71.7

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcce---E-EEc--------CCCCcEEE-ec
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR---L-LMT--------SLPPSHIC-SR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~---~-~~~--------d~~fD~Ii-~d  136 (158)
                      .|++|||+|||+|++++-+|+.|+.|+++|.++.  |++.+++....+.....   + ...        ..+||.|+ ++
T Consensus        89 ~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~--~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse  166 (282)
T KOG1270|consen   89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASDD--MVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE  166 (282)
T ss_pred             CCceEEEeccCccccchhhHhhCCeeEeecccHH--HHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence            3578999999999999999999999999999975  99999988665543211   1 111        22899999 99


Q ss_pred             CCCCCccHHHHHHHHHHHhcC
Q 031506          137 VLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ++.|..+...++..+..+|.+
T Consensus       167 vleHV~dp~~~l~~l~~~lkP  187 (282)
T KOG1270|consen  167 VLEHVKDPQEFLNCLSALLKP  187 (282)
T ss_pred             HHHHHhCHHHHHHHHHHHhCC
Confidence            999999999999999999876

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.30  E-value=2.5e-11  Score=96.36  Aligned_cols=87  Identities=17%  Similarity=0.273  Sum_probs=73.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc---------CCCCcEEE-ecC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT---------SLPPSHIC-SRV  137 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~---------d~~fD~Ii-~d~  137 (158)
                      ++.+|||+|||+|..++.+++.|.+|+++|+++.  |++.+++++...++.  +.+...         +.+||+|+ .++
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~--~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v  121 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAE--MIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV  121 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence            4679999999999999999999999999999965  999999999887653  333322         23899999 999


Q ss_pred             CCCCccHHHHHHHHHHHhcCC
Q 031506          138 LQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~ll~~~  158 (158)
                      +++.+....+++.+..+|.++
T Consensus       122 l~~~~~~~~~l~~~~~~Lkpg  142 (255)
T PRK11036        122 LEWVADPKSVLQTLWSVLRPG  142 (255)
T ss_pred             HHhhCCHHHHHHHHHHHcCCC
Confidence            999988899999999988763

>PRK14968 putative methyltransferase; Provisional

Probab=99.30  E-value=6e-11  Score=89.01  Aligned_cols=86  Identities=22%  Similarity=0.205  Sum_probs=68.2

Q ss_pred             EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEc
Q 031506           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMT  126 (158)
Q Consensus        50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~  126 (158)
                      .-|+.+..+.+++..    .++++|||+|||+|..++.+++.+.+|+++|+++.  +++.+++|+..++..   +.+...
T Consensus         7 ~p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~--~~~~a~~~~~~~~~~~~~~~~~~~   80 (188)
T PRK14968          7 EPAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPY--AVECAKCNAKLNNIRNNGVEVIRS   80 (188)
T ss_pred             CcchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHH--HHHHHHHHHHHcCCCCcceEEEec
Confidence            346777888887754    35679999999999999998888899999999964  999999999888765   444444


Q ss_pred             CC-------CCcEEEecCCCCC
Q 031506          127 SL-------PPSHICSRVLQDQ  141 (158)
Q Consensus       127 d~-------~fD~Ii~d~iy~~  141 (158)
                      |.       +||+|+++++|..
T Consensus        81 d~~~~~~~~~~d~vi~n~p~~~  102 (188)
T PRK14968         81 DLFEPFRGDKFDVILFNPPYLP  102 (188)
T ss_pred             cccccccccCceEEEECCCcCC
Confidence            32       6999997776654

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.29  E-value=2.1e-11  Score=103.00  Aligned_cols=87  Identities=20%  Similarity=0.106  Sum_probs=68.7

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC--
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL--  128 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~--  128 (158)
                      |.+..+.+.+.....  ++.+|||+|||+|.+++.+++.  +.+|+++|+++.  |++.+++|++.++.++.+...|+  
T Consensus       236 peTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~--ALe~AreNa~~~g~rV~fi~gDl~e  311 (423)
T PRK14966        236 PETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPP--ALETARKNAADLGARVEFAHGSWFD  311 (423)
T ss_pred             ccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCcEEEEEcchhc
Confidence            567788888776432  4568999999999999987764  469999999965  99999999998876665554432  


Q ss_pred             -------CCcEEEecCCCCCcc
Q 031506          129 -------PPSHICSRVLQDQSS  143 (158)
Q Consensus       129 -------~fD~Ii~d~iy~~~~  143 (158)
                             +||+|++||+|....
T Consensus       312 ~~l~~~~~FDLIVSNPPYI~~~  333 (423)
T PRK14966        312 TDMPSEGKWDIIVSNPPYIENG  333 (423)
T ss_pred             cccccCCCccEEEECCCCCCcc
Confidence                   599999999997654

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.29  E-value=4.8e-11  Score=94.94  Aligned_cols=86  Identities=13%  Similarity=0.017  Sum_probs=63.9

Q ss_pred             chHHHHHHHHHhcccC-CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--
Q 031506           53 PCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~-~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--  127 (158)
                      +.+..|.+.+...... ....+|||+|||+|.+++.+++.  +.+|+++|+++.  +++.+++|++.|+..  +...|  
T Consensus        68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~--al~~A~~N~~~~~~~--~~~~D~~  143 (251)
T TIGR03704        68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPA--AVRCARRNLADAGGT--VHEGDLY  143 (251)
T ss_pred             ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCE--EEEeech
Confidence            4567777776553221 13458999999999999987764  459999999965  999999999988743  32222  


Q ss_pred             --------CCCcEEEecCCCCCc
Q 031506          128 --------LPPSHICSRVLQDQS  142 (158)
Q Consensus       128 --------~~fD~Ii~d~iy~~~  142 (158)
                              .+||+|++||+|...
T Consensus       144 ~~l~~~~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704       144 DALPTALRGRVDILAANAPYVPT  166 (251)
T ss_pred             hhcchhcCCCEeEEEECCCCCCc
Confidence                    269999999999753

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.28  E-value=3.1e-11  Score=88.49  Aligned_cols=86  Identities=16%  Similarity=0.208  Sum_probs=70.4

Q ss_pred             CCCeEEEeccCCCHHHHHHh-hc--CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc-----C----CCCcEEE-e
Q 031506           70 SGANVVELGAGTSLPGLVAA-KV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT-----S----LPPSHIC-S  135 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a-~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~-----d----~~fD~Ii-~  135 (158)
                      ++.+|||+|||+|..+..++ +.  +.+++++|+++.  |++.++++++.++.. +.+...     +    .+||+|+ .
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~--~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~   80 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEE--MIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISN   80 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHH--HHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHH--HHHHhhcccccccccccceEEeehhccccccCCCeeEEEEc
Confidence            56799999999999999888 44  569999999965  999999999988775 554433     2    3699999 8


Q ss_pred             cCCCCCccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .++++......+++.+..+|..
T Consensus        81 ~~l~~~~~~~~~l~~~~~~lk~  102 (152)
T PF13847_consen   81 GVLHHFPDPEKVLKNIIRLLKP  102 (152)
T ss_dssp             STGGGTSHHHHHHHHHHHHEEE
T ss_pred             CchhhccCHHHHHHHHHHHcCC
Confidence            8899999999999998887753

...

>PLN02244 tocopherol O-methyltransferase

Probab=99.27  E-value=6.9e-11  Score=97.79  Aligned_cols=88  Identities=13%  Similarity=0.081  Sum_probs=73.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------CCCcEEE-ec
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------LPPSHIC-SR  136 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------~~fD~Ii-~d  136 (158)
                      .++.+|||+|||+|..+..+++. +++|+++|+++.  |++.++++++.+++.  +.+...|        ..||+|+ ..
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~--~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~  194 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPV--QAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME  194 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence            46789999999999999988875 789999999975  999999998887653  4444333        2799999 89


Q ss_pred             CCCCCccHHHHHHHHHHHhcCC
Q 031506          137 VLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       137 ~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                      +++|..+...+++.+..+|.++
T Consensus       195 ~~~h~~d~~~~l~e~~rvLkpG  216 (340)
T PLN02244        195 SGEHMPDKRKFVQELARVAAPG  216 (340)
T ss_pred             chhccCCHHHHHHHHHHHcCCC
Confidence            9999999999999999888753

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.27  E-value=3.3e-11  Score=91.79  Aligned_cols=82  Identities=20%  Similarity=0.233  Sum_probs=63.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC------------CCCcEE
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS------------LPPSHI  133 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d------------~~fD~I  133 (158)
                      +.+.++|||-||||.+|+.+.++|+ +|+++|.+..  ++..+++|++..+..  +.+...|            .+||+|
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~--a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiI  118 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRK--AIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDII  118 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HH--HHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEE
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHH--HHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEE
Confidence            6899999999999999999999998 9999999965  999999999987755  3444443            389999


Q ss_pred             EecCCCCCccH-HHHHHHHH
Q 031506          134 CSRVLQDQSSL-RLIIIEVG  152 (158)
Q Consensus       134 i~d~iy~~~~~-~~ll~tl~  152 (158)
                      +.||+|..... +.++..+.
T Consensus       119 flDPPY~~~~~~~~~l~~l~  138 (183)
T PF03602_consen  119 FLDPPYAKGLYYEELLELLA  138 (183)
T ss_dssp             EE--STTSCHHHHHHHHHHH
T ss_pred             EECCCcccchHHHHHHHHHH
Confidence            99999999984 88887775

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.26  E-value=1.8e-11  Score=85.36  Aligned_cols=84  Identities=19%  Similarity=0.167  Sum_probs=64.2

Q ss_pred             CCeEEEeccCCCHHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc----------CCCCcEEEecC
Q 031506           71 GANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT----------SLPPSHICSRV  137 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~----------d~~fD~Ii~d~  137 (158)
                      |.+|||+|||+|.+.+.+++.+ .+++++|+++.  +++.+++|+..++..  +++...          +.+||+|++||
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~--~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np   78 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPE--AVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP   78 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHH--HHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHH--HHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence            4589999999999999999998 79999999965  999999999998764  444443          23899999888


Q ss_pred             CCCCc---------cHHHHHHHHHHHhc
Q 031506          138 LQDQS---------SLRLIIIEVGIILL  156 (158)
Q Consensus       138 iy~~~---------~~~~ll~tl~~ll~  156 (158)
                      +|...         .+..+++....+|.
T Consensus        79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~  106 (117)
T PF13659_consen   79 PYGPRSGDKAALRRLYSRFLEAAARLLK  106 (117)
T ss_dssp             STTSBTT----GGCHHHHHHHHHHHHEE
T ss_pred             CCccccccchhhHHHHHHHHHHHHHHcC
Confidence            88853         24566666666554

...

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.26  E-value=8.5e-11  Score=95.09  Aligned_cols=70  Identities=19%  Similarity=0.139  Sum_probs=57.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEEecCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHICSRVL  138 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii~d~i  138 (158)
                      ++.+|||+|||+|.+++.+++.  +.+|+++|+++.  +++.+++|++.+++.  +.+...|.       +||+|++||+
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~--al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPP  198 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPD--ALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP  198 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCC
Confidence            3568999999999999998876  359999999965  999999999998864  44444432       6999999999


Q ss_pred             CCC
Q 031506          139 QDQ  141 (158)
Q Consensus       139 y~~  141 (158)
                      |..
T Consensus       199 y~~  201 (284)
T TIGR03533       199 YVD  201 (284)
T ss_pred             CCC
Confidence            865

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.25  E-value=8.5e-11  Score=94.92  Aligned_cols=89  Identities=20%  Similarity=0.150  Sum_probs=66.9

Q ss_pred             chHHHHHHHHHhccc-CCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC
Q 031506           53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~-~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d  127 (158)
                      |.+..+.+.+..... .....+|||+|||+|.+++.+++..  .+|+++|+++.  +++.+++|++.+++.  +.+...|
T Consensus        96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~--al~~a~~n~~~~~~~~~v~~~~~d  173 (284)
T TIGR00536        96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPD--ALAVAEENAEKNQLEHRVEFIQSN  173 (284)
T ss_pred             CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEECc
Confidence            456666666554221 1122689999999999999888764  59999999965  999999999988875  4555443


Q ss_pred             C-------CCcEEEecCCCCCcc
Q 031506          128 L-------PPSHICSRVLQDQSS  143 (158)
Q Consensus       128 ~-------~fD~Ii~d~iy~~~~  143 (158)
                      +       +||+|++||+|....
T Consensus       174 ~~~~~~~~~fDlIvsNPPyi~~~  196 (284)
T TIGR00536       174 LFEPLAGQKIDIIVSNPPYIDEE  196 (284)
T ss_pred             hhccCcCCCccEEEECCCCCCcc
Confidence            2       699999999987654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.24  E-value=6.9e-11  Score=89.79  Aligned_cols=84  Identities=24%  Similarity=0.344  Sum_probs=64.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-------CCCcEEEecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-------LPPSHICSRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-------~~fD~Ii~d~i  138 (158)
                      +++.+|||+|||+|.+++.+++.+  .+|+++|.++.  |++.+++|++.+++. +++...|       .+||+|+++.+
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~--~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~~  118 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHK--KVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRAL  118 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHH--HHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehhh
Confidence            457899999999999999887654  48999999975  999999999888763 4444332       38999997662


Q ss_pred             CCCccHHHHHHHHHHHhcC
Q 031506          139 QDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       139 y~~~~~~~ll~tl~~ll~~  157 (158)
                         ..++.+++.+..+|.+
T Consensus       119 ---~~~~~~~~~~~~~Lkp  134 (181)
T TIGR00138       119 ---ASLNVLLELTLNLLKV  134 (181)
T ss_pred             ---hCHHHHHHHHHHhcCC
Confidence               4566777777777654

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.24  E-value=7.5e-11  Score=99.49  Aligned_cols=73  Identities=19%  Similarity=0.086  Sum_probs=60.7

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEcC------------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMTS------------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~d------------~~fD~I  133 (158)
                      ++++|||+|||||.+++.++..|+ +|+++|+++.  +++.+++|++.|++.   +++...|            .+||+|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~--al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQE--ALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence            578999999999999998777776 9999999975  999999999999874   3444332            279999


Q ss_pred             EecCCCCCccH
Q 031506          134 CSRVLQDQSSL  144 (158)
Q Consensus       134 i~d~iy~~~~~  144 (158)
                      ++||+|+...-
T Consensus       298 ilDPP~f~~~k  308 (396)
T PRK15128        298 VMDPPKFVENK  308 (396)
T ss_pred             EECCCCCCCCh
Confidence            99999987653

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.23  E-value=8.7e-11  Score=96.40  Aligned_cols=83  Identities=17%  Similarity=0.153  Sum_probs=62.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC------CcceEEEcC-----CCCcEEE-ec
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK------LNCRLLMTS-----LPPSHIC-SR  136 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~------~~~~~~~~d-----~~fD~Ii-~d  136 (158)
                      .++.+|||+|||+|.+++.+++.|.+|+++|+++.  |++.+++|.....      ..+++...|     .+||+|+ .+
T Consensus       143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~--ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~  220 (315)
T PLN02585        143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAA--MVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD  220 (315)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence            46789999999999999999999999999999975  9999999987541      223333333     4899999 89


Q ss_pred             CCCCCcc--HHHHHHHHHH
Q 031506          137 VLQDQSS--LRLIIIEVGI  153 (158)
Q Consensus       137 ~iy~~~~--~~~ll~tl~~  153 (158)
                      +++|.+.  ...+++.+..
T Consensus       221 vL~H~p~~~~~~ll~~l~~  239 (315)
T PLN02585        221 VLIHYPQDKADGMIAHLAS  239 (315)
T ss_pred             EEEecCHHHHHHHHHHHHh
Confidence            9866543  3445555543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.20  E-value=9.7e-11  Score=105.12  Aligned_cols=86  Identities=23%  Similarity=0.156  Sum_probs=69.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEcC---------CCCcEEEec
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMTS---------LPPSHICSR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~d---------~~fD~Ii~d  136 (158)
                      ++++|||||||||.+++.+++.|+ +|+++|+++.  +++.+++|++.|++.   +++...|         .+||+|++|
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~--al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNT--YLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            578999999999999999999887 7999999975  999999999999875   4455443         279999999


Q ss_pred             CCCCCc------------cHHHHHHHHHHHhcC
Q 031506          137 VLQDQS------------SLRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~~------------~~~~ll~tl~~ll~~  157 (158)
                      |+|...            .+.+++.....+|.+
T Consensus       616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~  648 (702)
T PRK11783        616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP  648 (702)
T ss_pred             CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC
Confidence            998753            245566666555543

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.20  E-value=2e-10  Score=98.02  Aligned_cols=95  Identities=11%  Similarity=0.051  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------  127 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------  127 (158)
                      +..|.+.+.+.....++.+|||+|||+|.+++.+++.+.+|+++|.++.  |++.+++|++.|++. +++...|      
T Consensus       282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~--al~~A~~n~~~~~~~~v~~~~~d~~~~l~  359 (443)
T PRK13168        282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEA--MVERARENARRNGLDNVTFYHANLEEDFT  359 (443)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHH--HHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence            4667776665444446789999999999999999998899999999975  999999999988763 4444332      


Q ss_pred             ------CCCcEEEecCCCCCccHHHHHHHHHH
Q 031506          128 ------LPPSHICSRVLQDQSSLRLIIIEVGI  153 (158)
Q Consensus       128 ------~~fD~Ii~d~iy~~~~~~~ll~tl~~  153 (158)
                            .+||+|++||+|...  .++++.+..
T Consensus       360 ~~~~~~~~fD~Vi~dPPr~g~--~~~~~~l~~  389 (443)
T PRK13168        360 DQPWALGGFDKVLLDPPRAGA--AEVMQALAK  389 (443)
T ss_pred             hhhhhcCCCCEEEECcCCcCh--HHHHHHHHh
Confidence                  259999999999862  355555544

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.20  E-value=2.5e-10  Score=89.05  Aligned_cols=99  Identities=15%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc---------C
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT---------S  127 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~---------d  127 (158)
                      ...+|+.......++.+|||+|||+|.++..+++.+++++++|.++.  +++.+++|+..++....+...         +
T Consensus        35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (233)
T PRK05134         35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEE--NIEVARLHALESGLKIDYRQTTAEELAAEHP  112 (233)
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHH--HHHHHHHHHHHcCCceEEEecCHHHhhhhcC
Confidence            33456666555567889999999999999999998999999999965  899999988876655444332         2


Q ss_pred             CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 ~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .+||+|+ +.++.+..+...+++.+..+|.+
T Consensus       113 ~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~  143 (233)
T PRK05134        113 GQFDVVTCMEMLEHVPDPASFVRACAKLVKP  143 (233)
T ss_pred             CCccEEEEhhHhhccCCHHHHHHHHHHHcCC
Confidence            3899999 88999988999999999888764

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.20  E-value=4e-11  Score=79.73  Aligned_cols=79  Identities=20%  Similarity=0.210  Sum_probs=64.5

Q ss_pred             EEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCcEEE-ecCCCCCccH
Q 031506           75 VELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPSHIC-SRVLQDQSSL  144 (158)
Q Consensus        75 LELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD~Ii-~d~iy~~~~~  144 (158)
                      ||+|||+|..+..+++. +.+|+++|.++.  +++.++++....+..  +...        +..||+|+ ..++++.+..
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~--~~~~~~~~~~~~~~~--~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~   76 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEE--MLEQARKRLKNEGVS--FRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP   76 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HH--HHHHHHHHTTTSTEE--EEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHH--HHHHHHhcccccCch--heeehHHhCccccccccccccccceeeccCH
Confidence            89999999999999998 779999999965  999999988766544  3333        33899999 9999999999


Q ss_pred             HHHHHHHHHHhcC
Q 031506          145 RLIIIEVGIILLS  157 (158)
Q Consensus       145 ~~ll~tl~~ll~~  157 (158)
                      ..+++.+..+|++
T Consensus        77 ~~~l~e~~rvLk~   89 (95)
T PF08241_consen   77 EAALREIYRVLKP   89 (95)
T ss_dssp             HHHHHHHHHHEEE
T ss_pred             HHHHHHHHHHcCc
Confidence            9999999998875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.19  E-value=1.3e-10  Score=89.17  Aligned_cols=86  Identities=23%  Similarity=0.249  Sum_probs=65.3

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE-ecCCC
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC-SRVLQ  139 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii-~d~iy  139 (158)
                      ..++.++||||||.|.-++.+|++|.+|+++|.++.  +++.+++-++..+++++....|.       .||+|+ .-+++
T Consensus        28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~--al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st~v~~  105 (192)
T PF03848_consen   28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPV--ALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVSTVVFM  105 (192)
T ss_dssp             TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHH--HHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred             hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHH--HHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEEEEec
Confidence            346789999999999999999999999999999975  89999888888888887776653       799999 44544


Q ss_pred             C--CccHHHHHHHHHHHh
Q 031506          140 D--QSSLRLIIIEVGIIL  155 (158)
Q Consensus       140 ~--~~~~~~ll~tl~~ll  155 (158)
                      +  .+..+.+++.+..-+
T Consensus       106 fL~~~~~~~i~~~m~~~~  123 (192)
T PF03848_consen  106 FLQRELRPQIIENMKAAT  123 (192)
T ss_dssp             GS-GGGHHHHHHHHHHTE
T ss_pred             cCCHHHHHHHHHHHHhhc
Confidence            3  455677777776543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.19  E-value=2.9e-10  Score=92.95  Aligned_cols=68  Identities=19%  Similarity=0.160  Sum_probs=56.5

Q ss_pred             CeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEEecCCCC
Q 031506           72 ANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHICSRVLQD  140 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii~d~iy~  140 (158)
                      .+|||+|||+|.+++.+++.  +.+|+++|+++.  +++.+++|++.+++.  +.+...|.       +||+|++||+|.
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~--al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi  212 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPD--ALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYV  212 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCC
Confidence            68999999999999988876  359999999965  999999999998764  44444432       699999999886


Q ss_pred             C
Q 031506          141 Q  141 (158)
Q Consensus       141 ~  141 (158)
                      .
T Consensus       213 ~  213 (307)
T PRK11805        213 D  213 (307)
T ss_pred             C
Confidence            4

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.18  E-value=4.4e-10  Score=85.89  Aligned_cols=83  Identities=23%  Similarity=0.299  Sum_probs=65.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhh--cCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-------CCCcEEEecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-------LPPSHICSRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~--~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-------~~fD~Ii~d~iy  139 (158)
                      ++.+|||+|||+|..++.+++  .+.+|+++|.++.  |++.+++|++.+++. +.+...|       .+||+|+++.+ 
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~--~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-  121 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGK--KIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-  121 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHH--HHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence            378999999999999998775  3469999999975  999999999998874 4443332       27999996543 


Q ss_pred             CCccHHHHHHHHHHHhcC
Q 031506          140 DQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll~~  157 (158)
                        ..++.+++.+..+|.+
T Consensus       122 --~~~~~~l~~~~~~Lkp  137 (187)
T PRK00107        122 --ASLSDLVELCLPLLKP  137 (187)
T ss_pred             --cCHHHHHHHHHHhcCC
Confidence              4567888888877765

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.18  E-value=3.1e-10  Score=87.98  Aligned_cols=86  Identities=19%  Similarity=0.225  Sum_probs=66.6

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcC-----CCCcEEE-ecCCC
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTS-----LPPSHIC-SRVLQ  139 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d-----~~fD~Ii-~d~iy  139 (158)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+++.  |++.+++++..++.  .+.+...|     .+||+|+ +++++
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~--~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~  130 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQ--MVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI  130 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence            346789999999999999999988889999999965  99999999887664  34444444     3799999 89986


Q ss_pred             CCc--cHHHHHHHHHHHh
Q 031506          140 DQS--SLRLIIIEVGIIL  155 (158)
Q Consensus       140 ~~~--~~~~ll~tl~~ll  155 (158)
                      +.+  ....+++.+..++
T Consensus       131 ~~~~~~~~~~l~~i~~~~  148 (219)
T TIGR02021       131 HYPASDMAKALGHLASLT  148 (219)
T ss_pred             hCCHHHHHHHHHHHHHHh
Confidence            643  3556666665543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.17  E-value=2.5e-10  Score=95.63  Aligned_cols=82  Identities=11%  Similarity=0.042  Sum_probs=66.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---------CCCcEEEecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---------LPPSHICSRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---------~~fD~Ii~d~i  138 (158)
                      ..+.+|||||||+|.+++.++..+.+|+++|.++.  +++.+++|++.|++. +.+...|         .+||+|+.||+
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~--av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP  309 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESE--AIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP  309 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHH--HHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence            35679999999999999999998899999999965  999999999999873 4444433         15999999999


Q ss_pred             CCCccHHHHHHHHHH
Q 031506          139 QDQSSLRLIIIEVGI  153 (158)
Q Consensus       139 y~~~~~~~ll~tl~~  153 (158)
                      |. ...+.+++.+..
T Consensus       310 r~-G~~~~~l~~l~~  323 (374)
T TIGR02085       310 RR-GIGKELCDYLSQ  323 (374)
T ss_pred             CC-CCcHHHHHHHHh
Confidence            86 555666666654

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.17  E-value=2e-10  Score=90.72  Aligned_cols=86  Identities=16%  Similarity=0.074  Sum_probs=66.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEc---CCCCcEEE-ecCCCCCccH
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMT---SLPPSHIC-SRVLQDQSSL  144 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~---d~~fD~Ii-~d~iy~~~~~  144 (158)
                      +..+|||+|||+|..+..+++.+.+|+++|+++.  |++.++++...... ..++...   +..||+|+ +.++.+..+.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~--~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~  119 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPP--MLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL  119 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHH--HHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence            5678999999999999988888999999999965  99988887542211 1111111   23799999 8888888899


Q ss_pred             HHHHHHHHHHhcC
Q 031506          145 RLIIIEVGIILLS  157 (158)
Q Consensus       145 ~~ll~tl~~ll~~  157 (158)
                      ..+++.+..+|.+
T Consensus       120 ~~~l~~~~~~Lk~  132 (251)
T PRK10258        120 STALRELYRVVRP  132 (251)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999988875

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.17  E-value=4.6e-10  Score=87.99  Aligned_cols=89  Identities=22%  Similarity=0.141  Sum_probs=68.7

Q ss_pred             EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc
Q 031506           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT  126 (158)
Q Consensus        50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~  126 (158)
                      ..++.+..+.+.+..... ..+.+|||+|||+|.+++.+++.  +.+++++|+++.  +++.+++|+..+++. +.+...
T Consensus        68 ~p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~--~~~~a~~~~~~~~~~~~~~~~~  144 (251)
T TIGR03534        68 IPRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPE--ALAVARKNAARLGLDNVTFLQS  144 (251)
T ss_pred             cCCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHcCCCeEEEEEC
Confidence            345777777777765432 24568999999999999988876  459999999965  999999999988764 444443


Q ss_pred             C-------CCCcEEEecCCCCC
Q 031506          127 S-------LPPSHICSRVLQDQ  141 (158)
Q Consensus       127 d-------~~fD~Ii~d~iy~~  141 (158)
                      |       .+||+|+++|+|..
T Consensus       145 d~~~~~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534       145 DWFEPLPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             chhccCcCCceeEEEECCCCCc
Confidence            3       27999999888875

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.17  E-value=3.3e-10  Score=97.14  Aligned_cols=88  Identities=13%  Similarity=0.025  Sum_probs=71.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~i  138 (158)
                      .++.+|||+|||+|..++.+++. +.+|+++|+++.  +++.+++|.......+.+...|        .+||+|+ .+++
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~--~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l  342 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVN--MISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTI  342 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHH--HHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence            35679999999999999977764 679999999964  9999998876444344444433        2699999 8999


Q ss_pred             CCCccHHHHHHHHHHHhcCC
Q 031506          139 QDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       139 y~~~~~~~ll~tl~~ll~~~  158 (158)
                      +|..+.+.+++.++.+|.++
T Consensus       343 ~h~~d~~~~l~~~~r~Lkpg  362 (475)
T PLN02336        343 LHIQDKPALFRSFFKWLKPG  362 (475)
T ss_pred             cccCCHHHHHHHHHHHcCCC
Confidence            99999999999999988763

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.17  E-value=3.2e-10  Score=92.82  Aligned_cols=81  Identities=12%  Similarity=0.041  Sum_probs=64.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---------CCCcEEEecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---------LPPSHICSRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---------~~fD~Ii~d~i  138 (158)
                      .++.+|||+|||+|.+++.+++.+.+|+++|+++.  +++.+++|++.|++. +++...|         .+||+|+.||+
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~--av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP  249 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAE--AIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP  249 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHH--HHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence            35689999999999999999999999999999965  999999999999874 5554443         26999999998


Q ss_pred             CCCccHHHHHHHHH
Q 031506          139 QDQSSLRLIIIEVG  152 (158)
Q Consensus       139 y~~~~~~~ll~tl~  152 (158)
                      +.. ..+.+++.+.
T Consensus       250 r~G-~~~~~~~~l~  262 (315)
T PRK03522        250 RRG-IGKELCDYLS  262 (315)
T ss_pred             CCC-ccHHHHHHHH
Confidence            653 3455555544

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.17  E-value=4e-10  Score=92.69  Aligned_cols=105  Identities=17%  Similarity=0.127  Sum_probs=74.1

Q ss_pred             ecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHc--CCcceEEEc-
Q 031506           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN--KLNCRLLMT-  126 (158)
Q Consensus        51 vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~~-  126 (158)
                      -|++-.... .+..+...+++++|||+|||+|..+..++..|+ .|+++|.++.  ++...+...+..  ..++.+... 
T Consensus       104 ew~s~~k~~-~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~--~l~q~~a~~~~~~~~~~i~~~~~d  180 (322)
T PRK15068        104 EWRSDWKWD-RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQL--FLCQFEAVRKLLGNDQRAHLLPLG  180 (322)
T ss_pred             eehHHhHHH-HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHH--HHHHHHHHHHhcCCCCCeEEEeCC
Confidence            465444322 233333456789999999999999998888887 6999999864  665433322221  223444433 


Q ss_pred             ------CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506          127 ------SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       127 ------d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                            +.+||+|+ ..++||..+...+++.++..|.++
T Consensus       181 ~e~lp~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpG  219 (322)
T PRK15068        181 IEQLPALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPG  219 (322)
T ss_pred             HHHCCCcCCcCEEEECChhhccCCHHHHHHHHHHhcCCC
Confidence                  23799999 899999999999999999988753

>TIGR00452 methyltransferase, putative

Probab=99.17  E-value=4.1e-10  Score=92.37  Aligned_cols=91  Identities=14%  Similarity=0.082  Sum_probs=68.4

Q ss_pred             ccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHH--HcCCcceEEEc-------CCCCcEEE-
Q 031506           66 RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCE--MNKLNCRLLMT-------SLPPSHIC-  134 (158)
Q Consensus        66 ~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~--~n~~~~~~~~~-------d~~fD~Ii-  134 (158)
                      ....++++|||+|||+|.....++..|+ .|+++|.++.  |+..++...+  .+...+.+...       ...||+|+ 
T Consensus       117 l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~--ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s  194 (314)
T TIGR00452       117 LSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVL--FLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFS  194 (314)
T ss_pred             cCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHH--HHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEE
Confidence            3456789999999999999998888887 7999999975  7765433222  12222333322       12899999 


Q ss_pred             ecCCCCCccHHHHHHHHHHHhcCC
Q 031506          135 SRVLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       135 ~d~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                      ..++||..+....++.++..|.++
T Consensus       195 ~gvL~H~~dp~~~L~el~r~LkpG  218 (314)
T TIGR00452       195 MGVLYHRKSPLEHLKQLKHQLVIK  218 (314)
T ss_pred             cchhhccCCHHHHHHHHHHhcCCC
Confidence            999999999999999999988764

Known examples to date are restricted to the proteobacteria.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.17  E-value=1.6e-10  Score=84.13  Aligned_cols=81  Identities=22%  Similarity=0.189  Sum_probs=64.7

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEE------EcCCCCcEEE-ecCCCC
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL------MTSLPPSHIC-SRVLQD  140 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~------~~d~~fD~Ii-~d~iy~  140 (158)
                      ..++.+|||+|||+|..+..+++.|.+++++|+++.  +++.      .+ ......      ..+.+||+|+ +++++|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~--~~~~------~~-~~~~~~~~~~~~~~~~~fD~i~~~~~l~~   90 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQ--MIEK------RN-VVFDNFDAQDPPFPDGSFDLIICNDVLEH   90 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHH--HHHH------TT-SEEEEEECHTHHCHSSSEEEEEEESSGGG
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHH--HHhh------hh-hhhhhhhhhhhhccccchhhHhhHHHHhh
Confidence            457789999999999999999999999999999975  7766      11 111111      1134999999 999999


Q ss_pred             CccHHHHHHHHHHHhcC
Q 031506          141 QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       141 ~~~~~~ll~tl~~ll~~  157 (158)
                      .++...+++.+..+|.+
T Consensus        91 ~~d~~~~l~~l~~~Lkp  107 (161)
T PF13489_consen   91 LPDPEEFLKELSRLLKP  107 (161)
T ss_dssp             SSHHHHHHHHHHHCEEE
T ss_pred             cccHHHHHHHHHHhcCC
Confidence            99999999999998764

...

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.16  E-value=3.9e-10  Score=89.80  Aligned_cols=89  Identities=22%  Similarity=0.138  Sum_probs=67.5

Q ss_pred             cchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHH-cCCcceEEEcC-
Q 031506           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRLLMTS-  127 (158)
Q Consensus        52 W~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~-n~~~~~~~~~d-  127 (158)
                      .+.+..+.+++.......++.+|||+|||+|.+++.+++..  .+|+++|+++.  +++.+++|+.. ...++.+...| 
T Consensus        90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~--~l~~a~~n~~~~~~~~i~~~~~d~  167 (275)
T PRK09328         90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPE--ALAVARRNAKHGLGARVEFLQGDW  167 (275)
T ss_pred             CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHhCCCCcEEEEEccc
Confidence            46677888877754444467799999999999999888765  59999999975  99999999982 22234444433 


Q ss_pred             ------CCCcEEEecCCCCCc
Q 031506          128 ------LPPSHICSRVLQDQS  142 (158)
Q Consensus       128 ------~~fD~Ii~d~iy~~~  142 (158)
                            .+||+|+++|+|...
T Consensus       168 ~~~~~~~~fD~Iv~npPy~~~  188 (275)
T PRK09328        168 FEPLPGGRFDLIVSNPPYIPE  188 (275)
T ss_pred             cCcCCCCceeEEEECCCcCCc
Confidence                  379999999988754

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.16  E-value=4.4e-10  Score=92.52  Aligned_cols=99  Identities=17%  Similarity=0.019  Sum_probs=74.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcc-eEEEcC--------
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RLLMTS--------  127 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~-~~~~~d--------  127 (158)
                      .++..+.+.....++.+|||.|||||.+.+.++..+.+|+++|+++.  |+..++.|++.+++.. .+...|        
T Consensus       169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~--~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~  246 (329)
T TIGR01177       169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWK--MVAGARINLEHYGIEDFFVKRGDATKLPLSS  246 (329)
T ss_pred             HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHH--HHHHHHHHHHHhCCCCCeEEecchhcCCccc
Confidence            45555554333346779999999999999998889999999999965  9999999999877642 443332        


Q ss_pred             CCCcEEEecCCCCCc----------cHHHHHHHHHHHhcC
Q 031506          128 LPPSHICSRVLQDQS----------SLRLIIIEVGIILLS  157 (158)
Q Consensus       128 ~~fD~Ii~d~iy~~~----------~~~~ll~tl~~ll~~  157 (158)
                      .+||+|++||+|...          .+..+++.+...|.+
T Consensus       247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~  286 (329)
T TIGR01177       247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKS  286 (329)
T ss_pred             CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccC
Confidence            379999999998642          256777777776653

This family is found exclusively in the Archaea.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.15  E-value=2.2e-10  Score=99.47  Aligned_cols=71  Identities=18%  Similarity=0.131  Sum_probs=57.2

Q ss_pred             CCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEEecCCC
Q 031506           71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHICSRVLQ  139 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii~d~iy  139 (158)
                      +.+|||+|||+|.+++.+++.  +++|+++|+++.  +++.+++|++.+++.  +.+...|+       +||+|+++|+|
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~--al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPY  216 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLD--AIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPY  216 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHH--HHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCC
Confidence            468999999999999977764  469999999965  999999999988764  44444332       69999999998


Q ss_pred             CCcc
Q 031506          140 DQSS  143 (158)
Q Consensus       140 ~~~~  143 (158)
                      ....
T Consensus       217 i~~~  220 (506)
T PRK01544        217 ISHS  220 (506)
T ss_pred             CCch
Confidence            8643

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.15  E-value=4.4e-10  Score=90.54  Aligned_cols=103  Identities=14%  Similarity=0.124  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC--
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL--  128 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~--  128 (158)
                      +.....+++++.....+|.+|||+|||.|.+++.+++. |++|+++.+|+.  ..+.+++.++..++.  +.+...|.  
T Consensus        46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~--Q~~~a~~~~~~~gl~~~v~v~~~D~~~  123 (273)
T PF02353_consen   46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEE--QAEYARERIREAGLEDRVEVRLQDYRD  123 (273)
T ss_dssp             HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HH--HHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEEeeccc
Confidence            44555666776666678999999999999999988877 999999999964  889999999988875  34444433  


Q ss_pred             ---CCcEEE-ecCCCCC--ccHHHHHHHHHHHhcCC
Q 031506          129 ---PPSHIC-SRVLQDQ--SSLRLIIIEVGIILLSS  158 (158)
Q Consensus       129 ---~fD~Ii-~d~iy~~--~~~~~ll~tl~~ll~~~  158 (158)
                         +||.|+ ...+.+.  ..++.+++.+..+|.++
T Consensus       124 ~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg  159 (273)
T PF02353_consen  124 LPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG  159 (273)
T ss_dssp             ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred             cCCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence               999999 8999887  68899999999998763

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.15  E-value=1.7e-10  Score=94.74  Aligned_cols=89  Identities=21%  Similarity=0.244  Sum_probs=73.8

Q ss_pred             HHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceE-------EEcCC---CC
Q 031506           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRL-------LMTSL---PP  130 (158)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~-------~~~d~---~f  130 (158)
                      +.++...++++.|||+|||||++++.+|+.|+ +|+++|.+.   +.+.+++.+..|++...+       +...+   +.
T Consensus        52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~---ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKV  128 (346)
T KOG1499|consen   52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS---IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKV  128 (346)
T ss_pred             HhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH---HHHHHHHHHHhcCccceEEEeecceEEEecCccce
Confidence            44556678999999999999999999999998 999999986   778999999999876432       22222   79


Q ss_pred             cEEEecCCCCCccHHHHHHHHHH
Q 031506          131 SHICSRVLQDQSSLRLIIIEVGI  153 (158)
Q Consensus       131 D~Ii~d~iy~~~~~~~ll~tl~~  153 (158)
                      |+|+++..-|.-.++.+++++-+
T Consensus       129 DiIvSEWMGy~Ll~EsMldsVl~  151 (346)
T KOG1499|consen  129 DIIVSEWMGYFLLYESMLDSVLY  151 (346)
T ss_pred             eEEeehhhhHHHHHhhhhhhhhh
Confidence            99999999888888888888754

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.14  E-value=3e-10  Score=84.91  Aligned_cols=79  Identities=15%  Similarity=0.174  Sum_probs=59.6

Q ss_pred             HHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC--------CCcE
Q 031506           61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL--------PPSH  132 (158)
Q Consensus        61 ~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~--------~fD~  132 (158)
                      .+.+.....++.+|||+|||+|.++..+++++.+|+++|+++.  +++.+++|+..+. ++++...|.        .||+
T Consensus         4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~--~~~~~~~~~~~~~-~v~ii~~D~~~~~~~~~~~d~   80 (169)
T smart00650        4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPR--LAPRLREKFAAAD-NLTVIHGDALKFDLPKLQPYK   80 (169)
T ss_pred             HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHH--HHHHHHHHhccCC-CEEEEECchhcCCccccCCCE
Confidence            3444333346679999999999999999988889999999975  9999999886422 344443322        4899


Q ss_pred             EEecCCCCCc
Q 031506          133 ICSRVLQDQS  142 (158)
Q Consensus       133 Ii~d~iy~~~  142 (158)
                      |+++++|+..
T Consensus        81 vi~n~Py~~~   90 (169)
T smart00650       81 VVGNLPYNIS   90 (169)
T ss_pred             EEECCCcccH
Confidence            9999999863

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.14  E-value=5.6e-10  Score=88.37  Aligned_cols=84  Identities=18%  Similarity=0.152  Sum_probs=66.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-------CCCCcEEE-ecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-------SLPPSHIC-SRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-------d~~fD~Ii-~d~i  138 (158)
                      .++.+|||+|||+|.++..+++.  +.+|+++|+++.  |++.++++...    +.+...       +.+||+|+ +.++
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~--~i~~a~~~~~~----~~~~~~d~~~~~~~~~fD~v~~~~~l  103 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPA--MLAEARSRLPD----CQFVEADIASWQPPQALDLIFANASL  103 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHhCCC----CeEEECchhccCCCCCccEEEEccCh
Confidence            46789999999999999988775  469999999975  99998887531    222222       23899999 8888


Q ss_pred             CCCccHHHHHHHHHHHhcCC
Q 031506          139 QDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       139 y~~~~~~~ll~tl~~ll~~~  158 (158)
                      .+..+...+++.+...|.++
T Consensus       104 ~~~~d~~~~l~~~~~~Lkpg  123 (258)
T PRK01683        104 QWLPDHLELFPRLVSLLAPG  123 (258)
T ss_pred             hhCCCHHHHHHHHHHhcCCC
Confidence            88888899999999888753

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.14  E-value=3.8e-10  Score=89.48  Aligned_cols=82  Identities=16%  Similarity=0.088  Sum_probs=65.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-------CCCCcEEE-ecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-------SLPPSHIC-SRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-------d~~fD~Ii-~d~i  138 (158)
                      .++.+|||+|||+|.++..+++.  +.+|+++|+++.  |++.++++    +  +++...       +.+||+|+ +.++
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~--~~~~a~~~----~--~~~~~~d~~~~~~~~~fD~v~~~~~l   99 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPE--MVAAARER----G--VDARTGDVRDWKPKPDTDVVVSNAAL   99 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHhc----C--CcEEEcChhhCCCCCCceEEEEehhh
Confidence            46789999999999999988877  569999999965  99887653    2  222222       33899999 8999


Q ss_pred             CCCccHHHHHHHHHHHhcCC
Q 031506          139 QDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       139 y~~~~~~~ll~tl~~ll~~~  158 (158)
                      ++.++...+++.+...|.++
T Consensus       100 ~~~~d~~~~l~~~~~~Lkpg  119 (255)
T PRK14103        100 QWVPEHADLLVRWVDELAPG  119 (255)
T ss_pred             hhCCCHHHHHHHHHHhCCCC
Confidence            99889999999999888753

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.13  E-value=2.3e-10  Score=94.11  Aligned_cols=75  Identities=15%  Similarity=0.103  Sum_probs=58.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHc-CCcce--EEE-c------------CCCCc
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCR--LLM-T------------SLPPS  131 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n-~~~~~--~~~-~------------d~~fD  131 (158)
                      .+.++||||||+|.+..+++.+  +.+++++|+++.  +++.+++|++.| ++..+  +.. .            +.+||
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~--Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD  191 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQ--ALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD  191 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHH--HHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence            4578999999999777766543  569999999965  999999999999 66533  221 1            22799


Q ss_pred             EEEecCCCCCccHHH
Q 031506          132 HICSRVLQDQSSLRL  146 (158)
Q Consensus       132 ~Ii~d~iy~~~~~~~  146 (158)
                      +|+|+|+|+....+.
T Consensus       192 livcNPPf~~s~~ea  206 (321)
T PRK11727        192 ATLCNPPFHASAAEA  206 (321)
T ss_pred             EEEeCCCCcCcchhh
Confidence            999999999876553

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.13  E-value=4.1e-10  Score=90.06  Aligned_cols=103  Identities=9%  Similarity=0.011  Sum_probs=74.8

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhh-cCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC----
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS----  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d----  127 (158)
                      |++..-+..+.......++.+|||+|||+|..+..+++ .+.+|+++|+++.  |++.++++.... ..+.+...|    
T Consensus        35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~--~~~~a~~~~~~~-~~i~~~~~D~~~~  111 (263)
T PTZ00098         35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEK--MVNIAKLRNSDK-NKIEFEANDILKK  111 (263)
T ss_pred             CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHH--HHHHHHHHcCcC-CceEEEECCcccC
Confidence            44444455555544445678999999999999987765 4679999999965  999888876542 223333332    


Q ss_pred             ----CCCcEEE-ecCCCCCc--cHHHHHHHHHHHhcCC
Q 031506          128 ----LPPSHIC-SRVLQDQS--SLRLIIIEVGIILLSS  158 (158)
Q Consensus       128 ----~~fD~Ii-~d~iy~~~--~~~~ll~tl~~ll~~~  158 (158)
                          .+||+|+ .+++++..  ....+++.+..+|.++
T Consensus       112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG  149 (263)
T PTZ00098        112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN  149 (263)
T ss_pred             CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC
Confidence                3799999 78887764  7889999999988764

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.12  E-value=2.2e-10  Score=78.47  Aligned_cols=82  Identities=18%  Similarity=0.204  Sum_probs=62.8

Q ss_pred             EEEeccCCCHHHHHHhhcC-----CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC--------CCcEEE-ecC-C
Q 031506           74 VVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL--------PPSHIC-SRV-L  138 (158)
Q Consensus        74 vLELG~GtGl~~i~~a~~g-----~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~--------~fD~Ii-~d~-i  138 (158)
                      |||+|||+|.....+++..     .+++++|+++.  |++.++++....+.++++...|.        +||+|+ +.. +
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~--~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~   78 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPE--MLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL   78 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HH--HHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHH--HHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence            7999999999999888764     69999999965  99999999988777777776654        899999 555 5


Q ss_pred             CCC--ccHHHHHHHHHHHhcC
Q 031506          139 QDQ--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       139 y~~--~~~~~ll~tl~~ll~~  157 (158)
                      .|.  +....+++.+..++.+
T Consensus        79 ~~~~~~~~~~ll~~~~~~l~p   99 (101)
T PF13649_consen   79 HHLSPEELEALLRRIARLLRP   99 (101)
T ss_dssp             GGSSHHHHHHHHHHHHHTEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhCC
Confidence            443  3578888888877653

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.12  E-value=1e-11  Score=84.58  Aligned_cols=82  Identities=16%  Similarity=0.119  Sum_probs=55.9

Q ss_pred             EEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc-c---eEEEcC-------CCCcEEE-ecCCCC
Q 031506           75 VELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-C---RLLMTS-------LPPSHIC-SRVLQD  140 (158)
Q Consensus        75 LELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~---~~~~~d-------~~fD~Ii-~d~iy~  140 (158)
                      ||+|||+|.++..+...  +.+++++|+++.  |++.+++++...... .   +....+       .+||+|+ +.++++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~   78 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPS--MLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH   78 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSS--TTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence            79999999999977776  569999999987  998777777765532 1   111111       2899999 999999


Q ss_pred             CccHHHHHHHHHHHhcCC
Q 031506          141 QSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       141 ~~~~~~ll~tl~~ll~~~  158 (158)
                      .+..+.+++.++.+|.++
T Consensus        79 l~~~~~~l~~~~~~L~pg   96 (99)
T PF08242_consen   79 LEDIEAVLRNIYRLLKPG   96 (99)
T ss_dssp             -S-HHHHHHHHTTT-TSS
T ss_pred             hhhHHHHHHHHHHHcCCC
Confidence            999999999999888763

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.11  E-value=5.7e-10  Score=86.49  Aligned_cols=84  Identities=15%  Similarity=0.226  Sum_probs=64.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcC-----CCCcEEE-ecCCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTS-----LPPSHIC-SRVLQD  140 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d-----~~fD~Ii-~d~iy~  140 (158)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.  |++.++++....+.  .+.+...|     ..||+|+ .+++.+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~--~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~  139 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQ--MVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH  139 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence            45679999999999999999998899999999965  99999999887665  34444443     3799999 888855


Q ss_pred             C--ccHHHHHHHHHHH
Q 031506          141 Q--SSLRLIIIEVGII  154 (158)
Q Consensus       141 ~--~~~~~ll~tl~~l  154 (158)
                      .  +....+++.+..+
T Consensus       140 ~~~~~~~~~l~~l~~~  155 (230)
T PRK07580        140 YPQEDAARMLAHLASL  155 (230)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            3  3455566555543

>PLN02672 methionine S-methyltransferase

Probab=99.10  E-value=3.4e-10  Score=104.87  Aligned_cols=89  Identities=21%  Similarity=0.141  Sum_probs=68.8

Q ss_pred             chHHHHHHHHHhccc-CCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCC----------
Q 031506           53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL----------  119 (158)
Q Consensus        53 ~~~~~la~~l~~~~~-~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~----------  119 (158)
                      |.++.|.+.+...+. .+++.+|||+|||+|.+++.+++..  .+|+++|+++.  +++.+++|++.|++          
T Consensus       100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~--Al~~A~~Na~~n~l~~~~~~~~~~  177 (1082)
T PLN02672        100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPR--AVKVAWINLYLNALDDDGLPVYDG  177 (1082)
T ss_pred             hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHcCccccccccccc
Confidence            677888888544332 2456799999999999999888764  48999999965  99999999998753          


Q ss_pred             -------cceEEEcCC---------CCcEEEecCCCCCcc
Q 031506          120 -------NCRLLMTSL---------PPSHICSRVLQDQSS  143 (158)
Q Consensus       120 -------~~~~~~~d~---------~fD~Ii~d~iy~~~~  143 (158)
                             ++++...|+         +||+|+++|+|-...
T Consensus       178 ~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~  217 (1082)
T PLN02672        178 EGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNP  217 (1082)
T ss_pred             ccccccccEEEEECchhhhccccCCceEEEEECCCcCCCc
Confidence                   234444443         499999999998654

>PRK08317 hypothetical protein; Provisional

Probab=99.10  E-value=1.8e-09  Score=83.25  Aligned_cols=102  Identities=16%  Similarity=0.089  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC----
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS----  127 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d----  127 (158)
                      ...+-+.+.......++.+|||+|||+|..+..+++..   .+++++|.++.  +++.++++.......+.+...|    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~--~~~~a~~~~~~~~~~~~~~~~d~~~~   81 (241)
T PRK08317          4 FRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEA--MLALAKERAAGLGPNVEFVRGDADGL   81 (241)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHH--HHHHHHHHhhCCCCceEEEecccccC
Confidence            33344444444444567899999999999999777653   58999999975  8888888844333334444332    


Q ss_pred             ----CCCcEEE-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506          128 ----LPPSHIC-SRVLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       128 ----~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                          .+||+|+ ..++.+..+...+++.+..+|.++
T Consensus        82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g  117 (241)
T PRK08317         82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG  117 (241)
T ss_pred             CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCC
Confidence                2799999 899988889999999999888753

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.10  E-value=2.9e-10  Score=87.16  Aligned_cols=80  Identities=15%  Similarity=0.057  Sum_probs=58.8

Q ss_pred             CeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE-ecCCCCCcc
Q 031506           72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC-SRVLQDQSS  143 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii-~d~iy~~~~  143 (158)
                      .++||+|||.|.++..+|.++.+++++|+++.  +++.+++.+... -.+.+...+.       +||+|+ ++++||...
T Consensus        45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~--Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~  121 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPR--ALARARERLAGL-PHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDD  121 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGEEEEEEEES-HH--HHHHHHHHTTT--SSEEEEES-TTT---SS-EEEEEEES-GGGSSS
T ss_pred             ceeEecCCCccHHHHHHHHhhCceEEEeCCHH--HHHHHHHhcCCC-CCeEEEECcCCCCCCCCCeeEEEEehHhHcCCC
Confidence            47999999999999999999889999999975  999999888743 2455555532       899999 999999987


Q ss_pred             HHHHHHHHHHH
Q 031506          144 LRLIIIEVGII  154 (158)
Q Consensus       144 ~~~ll~tl~~l  154 (158)
                      .+++-..+..+
T Consensus       122 ~~~L~~~l~~l  132 (201)
T PF05401_consen  122 AEDLRAALDRL  132 (201)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66655555444

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.09  E-value=1.6e-09  Score=84.21  Aligned_cols=87  Identities=15%  Similarity=0.111  Sum_probs=68.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc--------CCCCcEEE-e
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT--------SLPPSHIC-S  135 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~--------d~~fD~Ii-~  135 (158)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.  +++.+++|+..++.. +.+...        +.+||+|+ .
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  121 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSEN--MLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG  121 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence            35789999999999999988764   349999999964  999999998766542 333322        23799999 8


Q ss_pred             cCCCCCccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .++.+.+....+++.+..+|.+
T Consensus       122 ~~l~~~~~~~~~l~~~~~~Lk~  143 (231)
T TIGR02752       122 FGLRNVPDYMQVLREMYRVVKP  143 (231)
T ss_pred             cccccCCCHHHHHHHHHHHcCc
Confidence            8888888888999988887765

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.09  E-value=3.1e-09  Score=80.53  Aligned_cols=85  Identities=16%  Similarity=0.060  Sum_probs=63.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------CCCcEEEecCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------LPPSHICSRVLQ  139 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------~~fD~Ii~d~iy  139 (158)
                      .++.+|||+|||+|.+++.+++.+  .+|+++|.++.  +++.+++|++.+++. +++...+      .+||+|+++-. 
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~--~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~-  106 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPD--ALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGS-  106 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCC-
Confidence            367799999999999999888764  49999999965  999999999887653 4443332      27999994322 


Q ss_pred             CCccHHHHHHHHHHHhcC
Q 031506          140 DQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll~~  157 (158)
                       ...+..+++.+...|.+
T Consensus       107 -~~~~~~~l~~~~~~Lk~  123 (187)
T PRK08287        107 -GGNLTAIIDWSLAHLHP  123 (187)
T ss_pred             -ccCHHHHHHHHHHhcCC
Confidence             23456777777776654

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.09  E-value=1.4e-09  Score=84.10  Aligned_cols=87  Identities=22%  Similarity=0.247  Sum_probs=72.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcC---------CCCcEEE-ecC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTS---------LPPSHIC-SRV  137 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d---------~~fD~Ii-~d~  137 (158)
                      .++.+|||+|||+|..+..+++.+.+++++|.++.  +++.+++|+..++. .+++...+         .+||+|+ ..+
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~--~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~  121 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEE--NIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV  121 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHH--HHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence            46789999999999999988888889999999965  99999999887765 34443321         3799999 889


Q ss_pred             CCCCccHHHHHHHHHHHhcC
Q 031506          138 LQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +++......+++.+..+|.+
T Consensus       122 l~~~~~~~~~l~~~~~~L~~  141 (224)
T TIGR01983       122 LEHVPDPQAFIRACAQLLKP  141 (224)
T ss_pred             HHhCCCHHHHHHHHHHhcCC
Confidence            99999999999998887754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.07  E-value=1.9e-09  Score=82.07  Aligned_cols=80  Identities=21%  Similarity=0.272  Sum_probs=65.0

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC-----------CCcEE
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL-----------PPSHI  133 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~-----------~fD~I  133 (158)
                      .+.+.++|||-||+|.+|+.+.++|+ .++++|.+..  ++..+++|++.-+.  .+++...|-           +||+|
T Consensus        41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~--a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlV  118 (187)
T COG0742          41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRK--AVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLV  118 (187)
T ss_pred             ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHH--HHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEE
Confidence            47899999999999999999999988 9999999975  99999999998774  344443321           49999


Q ss_pred             EecCCCCCccHHHHHH
Q 031506          134 CSRVLQDQSSLRLIII  149 (158)
Q Consensus       134 i~d~iy~~~~~~~ll~  149 (158)
                      +.||+|.....+..+.
T Consensus       119 flDPPy~~~l~~~~~~  134 (187)
T COG0742         119 FLDPPYAKGLLDKELA  134 (187)
T ss_pred             EeCCCCccchhhHHHH
Confidence            9999999666644433

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.06  E-value=5.9e-09  Score=72.76  Aligned_cols=92  Identities=14%  Similarity=0.119  Sum_probs=65.6

Q ss_pred             HHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---------C
Q 031506           61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---------L  128 (158)
Q Consensus        61 ~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---------~  128 (158)
                      ++.......++.+|||+|||+|..+..+++..  .+|+++|+++.  +++.+++|++.++.. +.+...|         .
T Consensus        10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (124)
T TIGR02469        10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPE--ALRLIERNARRFGVSNIVIVEGDAPEALEDSLP   87 (124)
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHH--HHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence            33333333356799999999999999888763  58999999975  999999999877653 3332221         2


Q ss_pred             CCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          129 PPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       129 ~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +||+|+ ..+.   ....++++.+...|.+
T Consensus        88 ~~D~v~~~~~~---~~~~~~l~~~~~~Lk~  114 (124)
T TIGR02469        88 EPDRVFIGGSG---GLLQEILEAIWRRLRP  114 (124)
T ss_pred             CCCEEEECCcc---hhHHHHHHHHHHHcCC
Confidence            799999 4332   3456788888887764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.06  E-value=2.7e-09  Score=85.30  Aligned_cols=88  Identities=17%  Similarity=0.078  Sum_probs=68.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHH--c--CCcceEEEcC--------CCCcEE
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEM--N--KLNCRLLMTS--------LPPSHI  133 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~--n--~~~~~~~~~d--------~~fD~I  133 (158)
                      .++.+|||+|||||..+..+++. +  .+|+++|+++.  |++.++++...  .  ..++.+...|        ..||+|
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~--ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V  149 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSE--QLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI  149 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence            35779999999999999988765 3  48999999965  99998876542  1  1123333332        279999


Q ss_pred             E-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506          134 C-SRVLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       134 i-~d~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                      + +..+.+.++...+++.+..+|.++
T Consensus       150 ~~~~~l~~~~d~~~~l~ei~rvLkpG  175 (261)
T PLN02233        150 TMGYGLRNVVDRLKAMQEMYRVLKPG  175 (261)
T ss_pred             EEecccccCCCHHHHHHHHHHHcCcC
Confidence            9 899999999999999999988764

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.06  E-value=1.3e-09  Score=84.49  Aligned_cols=80  Identities=15%  Similarity=0.167  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC--
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS--  127 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d--  127 (158)
                      .+..+..++.+.....++.+|||+|||+|..+..+++...   +|+++|+++.  +++.+++|++.+++. +.+...|  
T Consensus        61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~--~~~~A~~~~~~~g~~~v~~~~~d~~  138 (215)
T TIGR00080        61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPE--LAEKAERRLRKLGLDNVIVIVGDGT  138 (215)
T ss_pred             chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHCCCCCeEEEECCcc
Confidence            3334444555444445778999999999999998888744   5999999965  999999999988763 4444333  


Q ss_pred             ------CCCcEEEe
Q 031506          128 ------LPPSHICS  135 (158)
Q Consensus       128 ------~~fD~Ii~  135 (158)
                            .+||+|+.
T Consensus       139 ~~~~~~~~fD~Ii~  152 (215)
T TIGR00080       139 QGWEPLAPYDRIYV  152 (215)
T ss_pred             cCCcccCCCCEEEE
Confidence                  27999993

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK05785 hypothetical protein; Provisional

Probab=99.04  E-value=5.3e-10  Score=87.62  Aligned_cols=83  Identities=17%  Similarity=0.090  Sum_probs=64.4

Q ss_pred             CCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc---CCCCcEEE-ecCCCCCccHH
Q 031506           71 GANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT---SLPPSHIC-SRVLQDQSSLR  145 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~---d~~fD~Ii-~d~iy~~~~~~  145 (158)
                      +.+|||+|||||..+..+++. +.+|+++|.++.  |++.++++..  .....+...   +..||+|+ +..+.+.++.+
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~--Ml~~a~~~~~--~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~  127 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAEN--MLKMNLVADD--KVVGSFEALPFRDKSFDVVMSSFALHASDNIE  127 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHH--HHHHHHhccc--eEEechhhCCCCCCCEEEEEecChhhccCCHH
Confidence            679999999999999988887 579999999965  9998776421  111111111   34899999 89999999999


Q ss_pred             HHHHHHHHHhcC
Q 031506          146 LIIIEVGIILLS  157 (158)
Q Consensus       146 ~ll~tl~~ll~~  157 (158)
                      .+++.+...|.+
T Consensus       128 ~~l~e~~RvLkp  139 (226)
T PRK05785        128 KVIAEFTRVSRK  139 (226)
T ss_pred             HHHHHHHHHhcC
Confidence            999999888753

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.03  E-value=3.1e-09  Score=84.03  Aligned_cols=87  Identities=18%  Similarity=0.187  Sum_probs=73.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc--------CCCCcEEE-ecC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT--------SLPPSHIC-SRV  137 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~--------d~~fD~Ii-~d~  137 (158)
                      +|.+|||+|||||-.++.+++..  .+|+++|+++.  |++.+++.+...+.. +.+...        |..||+|. +=.
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~--ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg  128 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISES--MLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG  128 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHH--HHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence            78899999999999999988875  59999999976  999999998864433 443333        44899999 999


Q ss_pred             CCCCccHHHHHHHHHHHhcCC
Q 031506          138 LQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~ll~~~  158 (158)
                      +-+..+.+..|+++...|+++
T Consensus       129 lrnv~d~~~aL~E~~RVlKpg  149 (238)
T COG2226         129 LRNVTDIDKALKEMYRVLKPG  149 (238)
T ss_pred             hhcCCCHHHHHHHHHHhhcCC
Confidence            999999999999999998864

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.02  E-value=1.8e-09  Score=85.50  Aligned_cols=87  Identities=16%  Similarity=0.190  Sum_probs=66.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhh----cCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC------CCcEEE-ec
Q 031506           70 SGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL------PPSHIC-SR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~----~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~------~fD~Ii-~d  136 (158)
                      ++.+|||+|||+|..++.+++    .+.+|+++|.++.  |++.+++|+..++.  ++.+...|.      .+|+|+ +-
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~--ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~  133 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPA--MIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF  133 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHH--HHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence            567999999999999987765    2469999999965  99999999987665  345544432      689999 66


Q ss_pred             CCCCCc--cHHHHHHHHHHHhcCC
Q 031506          137 VLQDQS--SLRLIIIEVGIILLSS  158 (158)
Q Consensus       137 ~iy~~~--~~~~ll~tl~~ll~~~  158 (158)
                      ++.+.+  ....+++.+...|.++
T Consensus       134 ~l~~l~~~~~~~~l~~i~~~LkpG  157 (247)
T PRK15451        134 TLQFLEPSERQALLDKIYQGLNPG  157 (247)
T ss_pred             HHHhCCHHHHHHHHHHHHHhcCCC
Confidence            666553  3467889988888753

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.02  E-value=3.3e-09  Score=89.18  Aligned_cols=93  Identities=17%  Similarity=0.136  Sum_probs=69.7

Q ss_pred             HHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-----CCCCcEEE-
Q 031506           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-----SLPPSHIC-  134 (158)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-----d~~fD~Ii-  134 (158)
                      +.+.....++.+|||+|||+|.+++.+++. |.+|+++|+++.  +++.+++++.  ++.+.+...     +.+||.|+ 
T Consensus       159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~--~l~~A~~~~~--~l~v~~~~~D~~~l~~~fD~Ivs  234 (383)
T PRK11705        159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAE--QQKLAQERCA--GLPVEIRLQDYRDLNGQFDRIVS  234 (383)
T ss_pred             HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHhc--cCeEEEEECchhhcCCCCCEEEE
Confidence            333333446789999999999999977764 779999999965  9999998884  333443333     34899999 


Q ss_pred             ecCCCCC--ccHHHHHHHHHHHhcCC
Q 031506          135 SRVLQDQ--SSLRLIIIEVGIILLSS  158 (158)
Q Consensus       135 ~d~iy~~--~~~~~ll~tl~~ll~~~  158 (158)
                      ...+.+.  ...+.+++.+..+|.++
T Consensus       235 ~~~~ehvg~~~~~~~l~~i~r~LkpG  260 (383)
T PRK11705        235 VGMFEHVGPKNYRTYFEVVRRCLKPD  260 (383)
T ss_pred             eCchhhCChHHHHHHHHHHHHHcCCC
Confidence            7777775  34678899998888753

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.01  E-value=2.2e-09  Score=83.15  Aligned_cols=85  Identities=12%  Similarity=0.017  Sum_probs=69.0

Q ss_pred             CeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-------CCCcEEE-ecCCC
Q 031506           72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-------LPPSHIC-SRVLQ  139 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-------~~fD~Ii-~d~iy  139 (158)
                      ++|||+|||+|..+..+++..  .+|+++|+++.  +++.+++++...++.  +.+...|       .+||+|+ ..+++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~--~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~   78 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPE--QAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIH   78 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHH
Confidence            479999999999999877753  59999999864  999999999877654  2333322       2799999 89999


Q ss_pred             CCccHHHHHHHHHHHhcCC
Q 031506          140 DQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll~~~  158 (158)
                      +..+.+.+++.+..+|.++
T Consensus        79 ~~~~~~~~l~~~~~~Lkpg   97 (224)
T smart00828       79 HIKDKMDLFSNISRHLKDG   97 (224)
T ss_pred             hCCCHHHHHHHHHHHcCCC
Confidence            9999999999999988763

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.00  E-value=3.6e-09  Score=84.54  Aligned_cols=87  Identities=18%  Similarity=0.226  Sum_probs=67.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc-CC--EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc--------CCCCcEEE-ec
Q 031506           70 SGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT--------SLPPSHIC-SR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~-g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~--------d~~fD~Ii-~d  136 (158)
                      ++.+|||+|||+|..++.+++. +.  +|+++|.++.  |++.+++|...++.. +.+...        +..||+|+ ..
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~--~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPE--MLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHH--HHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            6789999999999988866653 43  7999999965  999999998876652 333322        22799999 66


Q ss_pred             CCCCCccHHHHHHHHHHHhcCC
Q 031506          137 VLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       137 ~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                      ++++....+.+++.+..+|.++
T Consensus       155 v~~~~~d~~~~l~~~~r~LkpG  176 (272)
T PRK11873        155 VINLSPDKERVFKEAFRVLKPG  176 (272)
T ss_pred             cccCCCCHHHHHHHHHHHcCCC
Confidence            7777788889999999888753

>PRK06202 hypothetical protein; Provisional

Probab=99.00  E-value=1.8e-09  Score=84.41  Aligned_cols=84  Identities=13%  Similarity=0.154  Sum_probs=61.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhh----cC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc------CCCCcEEE-ec
Q 031506           70 SGANVVELGAGTSLPGLVAAK----VG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT------SLPPSHIC-SR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~----~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~------d~~fD~Ii-~d  136 (158)
                      ++.+|||+|||+|.++..+++    .|  .+|+++|+++.  |++.++++...+++.......      +.+||+|+ +.
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~  137 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR--AVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH  137 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH--HHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence            567999999999999887764    23  49999999975  999998887655544332211      34899999 88


Q ss_pred             CCCCCcc--HHHHHHHHHHHh
Q 031506          137 VLQDQSS--LRLIIIEVGIIL  155 (158)
Q Consensus       137 ~iy~~~~--~~~ll~tl~~ll  155 (158)
                      +++|.++  ...+++.+..++
T Consensus       138 ~lhh~~d~~~~~~l~~~~r~~  158 (232)
T PRK06202        138 FLHHLDDAEVVRLLADSAALA  158 (232)
T ss_pred             eeecCChHHHHHHHHHHHHhc
Confidence            9988766  345777766544

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.00  E-value=2.1e-09  Score=84.81  Aligned_cols=102  Identities=19%  Similarity=0.124  Sum_probs=67.7

Q ss_pred             eEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCC-cceEE
Q 031506           49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLL  124 (158)
Q Consensus        49 ~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~  124 (158)
                      .+.|..  .+.+.+    ...++.+|||+|||||.+++.+++. +  .+|+++|+++.  |++.+++++...+. ++++.
T Consensus        32 ~~~wr~--~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~--ML~~a~~k~~~~~~~~i~~v  103 (233)
T PF01209_consen   32 DRRWRR--KLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG--MLEVARKKLKREGLQNIEFV  103 (233)
T ss_dssp             -----S--HHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH--HHHHHHHHHHHTT--SEEEE
T ss_pred             HHHHHH--HHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH--HHHHHHHHHHhhCCCCeeEE
Confidence            467876  344433    2335779999999999999988765 3  48999999965  99999999887654 45554


Q ss_pred             Ec--------CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506          125 MT--------SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       125 ~~--------d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                      ..        |..||+|+ +=.+.+.++.+..++.+..+|+++
T Consensus       104 ~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG  146 (233)
T PF01209_consen  104 QGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPG  146 (233)
T ss_dssp             E-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEE
T ss_pred             EcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC
Confidence            44        33899999 989988889999999999988753

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.00  E-value=4.3e-09  Score=84.93  Aligned_cols=96  Identities=15%  Similarity=0.162  Sum_probs=77.8

Q ss_pred             HHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-----CCc
Q 031506           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-----PPS  131 (158)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-----~fD  131 (158)
                      +.+++.....+|.+|||+|||-|.+++.+|+. |.+|+++++|+.  +.+.+++.+...++.  +++.-.|+     +||
T Consensus        62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~--Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fD  139 (283)
T COG2230          62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEE--QLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFD  139 (283)
T ss_pred             HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHH--HHHHHHHHHHHcCCCcccEEEeccccccccccc
Confidence            34455555668999999999999999988876 789999999975  999999999988876  44443443     799


Q ss_pred             EEE-ecCCCCCcc--HHHHHHHHHHHhcC
Q 031506          132 HIC-SRVLQDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       132 ~Ii-~d~iy~~~~--~~~ll~tl~~ll~~  157 (158)
                      -|+ ...+-|...  ++..++.+..+|..
T Consensus       140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~  168 (283)
T COG2230         140 RIVSVGMFEHVGKENYDDFFKKVYALLKP  168 (283)
T ss_pred             eeeehhhHHHhCcccHHHHHHHHHhhcCC
Confidence            999 899877665  99999999888764

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=2.2e-09  Score=78.71  Aligned_cols=92  Identities=15%  Similarity=0.074  Sum_probs=70.5

Q ss_pred             cccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC--------CCcEEEe
Q 031506           65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL--------PPSHICS  135 (158)
Q Consensus        65 ~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~--------~fD~Ii~  135 (158)
                      .-.++.|++++|||||||.+++.++..+. .|+++|+++  ++++..++|+....+++++.+.+.        .||..+.
T Consensus        43 TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdp--eALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtavi  120 (185)
T KOG3420|consen   43 TYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDP--EALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVI  120 (185)
T ss_pred             hhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCH--HHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEe
Confidence            34578999999999999999988888877 899999996  499999999998877766665532        7999996


Q ss_pred             cCCCCCcc----------HHHHHHHHHHHhcCC
Q 031506          136 RVLQDQSS----------LRLIIIEVGIILLSS  158 (158)
Q Consensus       136 d~iy~~~~----------~~~ll~tl~~ll~~~  158 (158)
                      ||+|-...          .-.+.+.+.+|+++|
T Consensus       121 NppFGTk~~~aDm~fv~~al~~~~~VySLHKtS  153 (185)
T KOG3420|consen  121 NPPFGTKKKGADMEFVSAALKVASAVYSLHKTS  153 (185)
T ss_pred             cCCCCcccccccHHHHHHHHHHHHHHHHHhccc
Confidence            66665432          224455666666654

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.99  E-value=7.3e-09  Score=79.88  Aligned_cols=80  Identities=13%  Similarity=0.098  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--  127 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--  127 (158)
                      +..+..++.+.....++.+|||+|||+|..+..+++.   +.+|+++|+++.  +++.+++|++.++..  +.+...|  
T Consensus        57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~--~~~~a~~~l~~~~~~~~v~~~~~d~~  134 (205)
T PRK13944         57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKE--LAIYAAQNIERLGYWGVVEVYHGDGK  134 (205)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCCcEEEEECCcc
Confidence            3344455554433346789999999999999877764   359999999965  999999999988764  4444332  


Q ss_pred             ------CCCcEEEec
Q 031506          128 ------LPPSHICSR  136 (158)
Q Consensus       128 ------~~fD~Ii~d  136 (158)
                            .+||+|+++
T Consensus       135 ~~~~~~~~fD~Ii~~  149 (205)
T PRK13944        135 RGLEKHAPFDAIIVT  149 (205)
T ss_pred             cCCccCCCccEEEEc
Confidence                  279999943

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.99  E-value=4.8e-09  Score=89.20  Aligned_cols=96  Identities=13%  Similarity=0.050  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------  127 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------  127 (158)
                      +..|.+.+.+.....++.+|||+|||+|.+++.+++.+.+|+++|.++.  +++.+++|++.|++. +.+...|      
T Consensus       277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~--av~~a~~n~~~~~~~nv~~~~~d~~~~l~  354 (431)
T TIGR00479       277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPE--SVEKAQQNAELNGIANVEFLAGTLETVLP  354 (431)
T ss_pred             HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHH--HHHHHHHHHHHhCCCceEEEeCCHHHHHH
Confidence            3344444444332335579999999999999999998889999999965  999999999998863 4444332      


Q ss_pred             ------CCCcEEEecCCCCCccHHHHHHHHHH
Q 031506          128 ------LPPSHICSRVLQDQSSLRLIIIEVGI  153 (158)
Q Consensus       128 ------~~fD~Ii~d~iy~~~~~~~ll~tl~~  153 (158)
                            ..||+|+.||++. ...+.+++.+..
T Consensus       355 ~~~~~~~~~D~vi~dPPr~-G~~~~~l~~l~~  385 (431)
T TIGR00479       355 KQPWAGQIPDVLLLDPPRK-GCAAEVLRTIIE  385 (431)
T ss_pred             HHHhcCCCCCEEEECcCCC-CCCHHHHHHHHh
Confidence                  2589999999985 334556665543

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.99  E-value=4.2e-09  Score=87.96  Aligned_cols=95  Identities=16%  Similarity=0.059  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-----  127 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-----  127 (158)
                      .+..|.+++...... .+.++|||+||+|.+|+.+++...+|+++|.++.  +++.+++|+..|++. +.+...|     
T Consensus       191 ~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~--ai~~a~~N~~~~~~~~v~~~~~d~~~~l  267 (362)
T PRK05031        191 VNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARNFRRVLATEISKP--SVAAAQYNIAANGIDNVQIIRMSAEEFT  267 (362)
T ss_pred             HHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhhCCEEEEEECCHH--HHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence            355666666553221 2357999999999999998888779999999975  999999999999874 4443321     


Q ss_pred             -------------------CCCcEEEecCCCCCccHHHHHHHHH
Q 031506          128 -------------------LPPSHICSRVLQDQSSLRLIIIEVG  152 (158)
Q Consensus       128 -------------------~~fD~Ii~d~iy~~~~~~~ll~tl~  152 (158)
                                         .+||+|+.||+| ....+.+++.+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~G~~~~~l~~l~  310 (362)
T PRK05031        268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPR-AGLDDETLKLVQ  310 (362)
T ss_pred             HHHhhcccccccccccccCCCCCEEEECCCC-CCCcHHHHHHHH
Confidence                               148999999997 455677777664

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.99  E-value=7.9e-09  Score=79.76  Aligned_cols=81  Identities=15%  Similarity=0.121  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-----  127 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-----  127 (158)
                      ....+..++.......++.+|||+|||+|..+..+++.+.+|+++|.++.  +++.+++|++.+++. +.+...|     
T Consensus        62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~  139 (212)
T PRK00312         62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKT--LQWEAKRRLKQLGLHNVSVRHGDGWKGW  139 (212)
T ss_pred             CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHH--HHHHHHHHHHHCCCCceEEEECCcccCC
Confidence            33444455544444456789999999999999988888779999999964  999999999887653 4443332     


Q ss_pred             ---CCCcEEEec
Q 031506          128 ---LPPSHICSR  136 (158)
Q Consensus       128 ---~~fD~Ii~d  136 (158)
                         .+||+|+++
T Consensus       140 ~~~~~fD~I~~~  151 (212)
T PRK00312        140 PAYAPFDRILVT  151 (212)
T ss_pred             CcCCCcCEEEEc
Confidence               279999933

>PHA03412 putative methyltransferase; Provisional

Probab=98.98  E-value=1.5e-09  Score=85.61  Aligned_cols=77  Identities=13%  Similarity=0.050  Sum_probs=56.1

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-----CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc------
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT------  126 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-----g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~------  126 (158)
                      +|+++...  ...+.+|||+|||+|.+++.++++     ..+|+++|+++.  +++.+++|...    +.+...      
T Consensus        39 iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~--Al~~Ar~n~~~----~~~~~~D~~~~~  110 (241)
T PHA03412         39 LARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT--YYKLGKRIVPE----ATWINADALTTE  110 (241)
T ss_pred             HHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH--HHHHHHhhccC----CEEEEcchhccc
Confidence            55555322  224679999999999999987763     348999999975  99999988642    222222      


Q ss_pred             -CCCCcEEEecCCCCCc
Q 031506          127 -SLPPSHICSRVLQDQS  142 (158)
Q Consensus       127 -d~~fD~Ii~d~iy~~~  142 (158)
                       +.+||+||++|+|...
T Consensus       111 ~~~~FDlIIsNPPY~~~  127 (241)
T PHA03412        111 FDTLFDMAISNPPFGKI  127 (241)
T ss_pred             ccCCccEEEECCCCCCc
Confidence             3379999999999853

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.98  E-value=3.5e-09  Score=84.48  Aligned_cols=83  Identities=16%  Similarity=0.092  Sum_probs=62.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------CC
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------PP  130 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------~f  130 (158)
                      -+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.  +++.+++++... -++.+...|.      .|
T Consensus        16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~--~~~~l~~~~~~~-~~v~ii~~D~~~~~~~~~   92 (258)
T PRK14896         16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPR--LAEFLRDDEIAA-GNVEIIEGDALKVDLPEF   92 (258)
T ss_pred             HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHH--HHHHHHHHhccC-CCEEEEEeccccCCchhc
Confidence            34455555444456789999999999999999998889999999976  999999887642 1344443332      67


Q ss_pred             cEEEecCCCCCc
Q 031506          131 SHICSRVLQDQS  142 (158)
Q Consensus       131 D~Ii~d~iy~~~  142 (158)
                      |.|+++++|+..
T Consensus        93 d~Vv~NlPy~i~  104 (258)
T PRK14896         93 NKVVSNLPYQIS  104 (258)
T ss_pred             eEEEEcCCcccC
Confidence            988888889875

>PRK04148 hypothetical protein; Provisional

Probab=98.97  E-value=3e-09  Score=77.15  Aligned_cols=55  Identities=18%  Similarity=0.321  Sum_probs=45.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCH-HHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRV  113 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl-~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n  113 (158)
                      .+++|+.++....+++++||+|||+|. ++..+++.|.+|+++|+++.  .++.++++
T Consensus         3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~--aV~~a~~~   58 (134)
T PRK04148          3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEK--AVEKAKKL   58 (134)
T ss_pred             HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHH--HHHHHHHh
Confidence            477888776555567899999999996 99999999999999999975  77776655

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.97  E-value=1.8e-08  Score=77.16  Aligned_cols=87  Identities=20%  Similarity=0.168  Sum_probs=64.6

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcC---------CCCcE
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTS---------LPPSH  132 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d---------~~fD~  132 (158)
                      ...++.+|||+|||+|.+++.+++.   +.+|+++|.++.  +++.+++|++.+++  ++.+...|         ..||+
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~--~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~  114 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEK--AINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR  114 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence            4457789999999999999987764   358999999965  99999999998874  23333222         26999


Q ss_pred             EEecCCCCCccHHHHHHHHHHHhcC
Q 031506          133 ICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       133 Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      |++..  ....+..+++.+..+|.+
T Consensus       115 V~~~~--~~~~~~~~l~~~~~~Lkp  137 (198)
T PRK00377        115 IFIGG--GSEKLKEIISASWEIIKK  137 (198)
T ss_pred             EEECC--CcccHHHHHHHHHHHcCC
Confidence            99533  344567778877777654

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.97  E-value=5.9e-09  Score=86.79  Aligned_cols=94  Identities=15%  Similarity=0.045  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------  127 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------  127 (158)
                      ...|.+++.+... ..+.+|||||||+|.+++.+++...+|+++|.++.  +++.+++|++.|++. +.+...|      
T Consensus       183 ~~~l~~~v~~~~~-~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~--av~~a~~n~~~~~~~~v~~~~~d~~~~~~  259 (353)
T TIGR02143       183 NIKMLEWACEVTQ-GSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKP--SVNAAQYNIAANNIDNVQIIRMSAEEFTQ  259 (353)
T ss_pred             HHHHHHHHHHHhh-cCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHH--HHHHHHHHHHHcCCCcEEEEEcCHHHHHH
Confidence            4455555544322 12347999999999999999988789999999965  999999999999873 3433221      


Q ss_pred             ------------------CCCcEEEecCCCCCccHHHHHHHHH
Q 031506          128 ------------------LPPSHICSRVLQDQSSLRLIIIEVG  152 (158)
Q Consensus       128 ------------------~~fD~Ii~d~iy~~~~~~~ll~tl~  152 (158)
                                        .+||+|+.||+ .....+.+++.+.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~d~v~lDPP-R~G~~~~~l~~l~  301 (353)
T TIGR02143       260 AMNGVREFRRLKGIDLKSYNCSTIFVDPP-RAGLDPDTCKLVQ  301 (353)
T ss_pred             HHhhccccccccccccccCCCCEEEECCC-CCCCcHHHHHHHH
Confidence                              13799999999 4566677766653

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.97  E-value=3.5e-09  Score=84.80  Aligned_cols=88  Identities=17%  Similarity=0.106  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHh---cccCCCCCeEEEeccCCCHHHHHHh-hcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--
Q 031506           54 CSVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAA-KVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--  126 (158)
Q Consensus        54 ~~~~la~~l~~---~~~~~~~~~vLELG~GtGl~~i~~a-~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--  126 (158)
                      .++.+.+++..   +..-+++..+||+|||+|..++.++ ..+. .|+|+|.++.  ++..+.+|++.+++..+++..  
T Consensus       129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~--Ai~La~eN~qr~~l~g~i~v~~~  206 (328)
T KOG2904|consen  129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKA--AIKLAKENAQRLKLSGRIEVIHN  206 (328)
T ss_pred             cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHH--HHHHHHHHHHHHhhcCceEEEec
Confidence            34555565544   2334466689999999999999554 4443 8999999986  999999999999876554432  


Q ss_pred             -------------CCCCcEEEecCCCCCcc
Q 031506          127 -------------SLPPSHICSRVLQDQSS  143 (158)
Q Consensus       127 -------------d~~fD~Ii~d~iy~~~~  143 (158)
                                   +.++|+|+++|+|-...
T Consensus       207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~d  236 (328)
T KOG2904|consen  207 IMESDASDEHPLLEGKIDLLVSNPPYIRKD  236 (328)
T ss_pred             ccccccccccccccCceeEEecCCCccccc
Confidence                         12899999999987543

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.95  E-value=5.3e-09  Score=84.06  Aligned_cols=81  Identities=12%  Similarity=0.128  Sum_probs=60.5

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------C--
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------P--  129 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------~--  129 (158)
                      +++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.  |++.+++|...  .++.+...|.      .  
T Consensus        30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~--~~~~~~~~~~~--~~v~~i~~D~~~~~~~~~~  105 (272)
T PRK00274         30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRD--LAPILAETFAE--DNLTIIEGDALKVDLSELQ  105 (272)
T ss_pred             HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHH--HHHHHHHhhcc--CceEEEEChhhcCCHHHcC
Confidence            4455555444456789999999999999999998889999999975  99999887753  2344444433      2  


Q ss_pred             CcEEEecCCCCCc
Q 031506          130 PSHICSRVLQDQS  142 (158)
Q Consensus       130 fD~Ii~d~iy~~~  142 (158)
                      ++.|+++++|+..
T Consensus       106 ~~~vv~NlPY~is  118 (272)
T PRK00274        106 PLKVVANLPYNIT  118 (272)
T ss_pred             cceEEEeCCccch
Confidence            4677788999875

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.94  E-value=6.4e-09  Score=80.37  Aligned_cols=84  Identities=20%  Similarity=0.165  Sum_probs=65.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCcEEE-ecC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPSHIC-SRV  137 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD~Ii-~d~  137 (158)
                      ..+.+|||+|||+|..+..+++.+.  +++++|.++.  +++.++.+...   ++.+...        +.+||+|+ +.+
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~--~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~fD~vi~~~~  107 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAG--MLAQAKTKLSE---NVQFICGDAEKLPLEDSSFDLIVSNLA  107 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHH--HHHHHHHhcCC---CCeEEecchhhCCCCCCceeEEEEhhh
Confidence            3457899999999999998888764  6899999964  88877766542   2333322        23799999 999


Q ss_pred             CCCCccHHHHHHHHHHHhcC
Q 031506          138 LQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +++..+...+++.+..+|.+
T Consensus       108 l~~~~~~~~~l~~~~~~L~~  127 (240)
T TIGR02072       108 LQWCDDLSQALSELARVLKP  127 (240)
T ss_pred             hhhccCHHHHHHHHHHHcCC
Confidence            99998999999999888765

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.94  E-value=3.6e-09  Score=81.77  Aligned_cols=78  Identities=12%  Similarity=0.029  Sum_probs=56.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-------CCCCcEEE-ecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-------SLPPSHIC-SRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-------d~~fD~Ii-~d~iy  139 (158)
                      ++.+|||+|||+|..+..+++.  +.+++++|+++.  |++.+++|...    ..+...       +.+||+|+ ..+++
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~--~l~~A~~~~~~----~~~~~~d~~~~~~~~sfD~V~~~~vL~  116 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEY--AVEKAKAYLPN----INIIQGSLFDPFKDNFFDLVLTKGVLI  116 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHH--HHHHHHhhCCC----CcEEEeeccCCCCCCCEEEEEECChhh
Confidence            5678999999999999988776  569999999965  99999887531    122221       33899999 89888


Q ss_pred             CCc--cHHHHHHHHHH
Q 031506          140 DQS--SLRLIIIEVGI  153 (158)
Q Consensus       140 ~~~--~~~~ll~tl~~  153 (158)
                      |..  ....+++.+..
T Consensus       117 hl~p~~~~~~l~el~r  132 (204)
T TIGR03587       117 HINPDNLPTAYRELYR  132 (204)
T ss_pred             hCCHHHHHHHHHHHHh
Confidence            764  34445554443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.94  E-value=1.5e-08  Score=78.38  Aligned_cols=86  Identities=19%  Similarity=0.132  Sum_probs=68.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------CCCcEEE-e
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------LPPSHIC-S  135 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------~~fD~Ii-~  135 (158)
                      ++.+|||+|||+|..+..+++.+   .+++++|+++.  +++.+++|+..++..  +.+...|        ..||+|+ +
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~  128 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG--MLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA  128 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH--HHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence            56799999999999999887765   69999999975  999999998764332  3333322        2799999 8


Q ss_pred             cCCCCCccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .++.+......+++.+..+|..
T Consensus       129 ~~l~~~~~~~~~l~~~~~~L~~  150 (239)
T PRK00216        129 FGLRNVPDIDKALREMYRVLKP  150 (239)
T ss_pred             cccccCCCHHHHHHHHHHhccC
Confidence            8888888999999998887764

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.93  E-value=6e-09  Score=84.84  Aligned_cols=84  Identities=13%  Similarity=0.112  Sum_probs=65.2

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC------C
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL------P  129 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~------~  129 (158)
                      +.+.+.......++.+|||+|||+|.++..+++.+.+|+++|+++.  +++.+++|+..++.  ++.+...|.      .
T Consensus        24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~--li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~  101 (294)
T PTZ00338         24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPR--MVAELKKRFQNSPLASKLEVIEGDALKTEFPY  101 (294)
T ss_pred             HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHH--HHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence            4445555444456789999999999999999988889999999975  99999999886552  344444433      6


Q ss_pred             CcEEEecCCCCCcc
Q 031506          130 PSHICSRVLQDQSS  143 (158)
Q Consensus       130 fD~Ii~d~iy~~~~  143 (158)
                      ||.|+++++|+...
T Consensus       102 ~d~VvaNlPY~Ist  115 (294)
T PTZ00338        102 FDVCVANVPYQISS  115 (294)
T ss_pred             cCEEEecCCcccCc
Confidence            89888999999775

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.93  E-value=1.5e-08  Score=86.32  Aligned_cols=70  Identities=14%  Similarity=0.113  Sum_probs=57.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC----------CCCcEEEec
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS----------LPPSHICSR  136 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d----------~~fD~Ii~d  136 (158)
                      .++.+|||+|||+|..++.+++.+  .+|+++|.++.  +++.+++|++.+++.+.+...|          .+||.|++|
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~--~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D  320 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQ--RLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD  320 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHH--HHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence            367899999999999999887764  49999999975  9999999999988765554433          259999988


Q ss_pred             CCCC
Q 031506          137 VLQD  140 (158)
Q Consensus       137 ~iy~  140 (158)
                      ++|.
T Consensus       321 ~Pcs  324 (427)
T PRK10901        321 APCS  324 (427)
T ss_pred             CCCC
Confidence            8765

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.92  E-value=1.7e-08  Score=82.11  Aligned_cols=104  Identities=13%  Similarity=0.012  Sum_probs=70.4

Q ss_pred             ecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHH--HHHHHHHcCCcceEE--E
Q 031506           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKN--MRRVCEMNKLNCRLL--M  125 (158)
Q Consensus        51 vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~--~~~n~~~n~~~~~~~--~  125 (158)
                      -|.+-..-.. +..+...++|++|||+|||.|..+..++..|+ .|+++|-+..  .+-+  +-++...+.......  +
T Consensus        97 EWrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l--f~~QF~~i~~~lg~~~~~~~lplg  173 (315)
T PF08003_consen   97 EWRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL--FYLQFEAIKHFLGQDPPVFELPLG  173 (315)
T ss_pred             cccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH--HHHHHHHHHHHhCCCccEEEcCcc
Confidence            3554433322 33444578999999999999999999999998 7999999864  2221  111222111111111  1


Q ss_pred             c-----CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          126 T-----SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       126 ~-----d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .     ...||+|+ .-++||..+.-..|+.++..|.+
T Consensus       174 vE~Lp~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~  211 (315)
T PF08003_consen  174 VEDLPNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRP  211 (315)
T ss_pred             hhhccccCCcCEEEEeeehhccCCHHHHHHHHHHhhCC
Confidence            1     23899999 99999999999999998887764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.91  E-value=1.6e-08  Score=78.50  Aligned_cols=80  Identities=13%  Similarity=0.223  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC--
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS--  127 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d--  127 (158)
                      .+..+..++.+.....++.+|||+|||+|..+..+++..   .+|+++|.++.  +++.+++|++.++.. +.+...|  
T Consensus        60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~--~~~~a~~~l~~~g~~~v~~~~gd~~  137 (212)
T PRK13942         60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPE--LAEKAKKTLKKLGYDNVEVIVGDGT  137 (212)
T ss_pred             CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCCeEEEECCcc
Confidence            445555656554445578899999999999999887653   49999999965  999999999987753 4554443  


Q ss_pred             ------CCCcEEEe
Q 031506          128 ------LPPSHICS  135 (158)
Q Consensus       128 ------~~fD~Ii~  135 (158)
                            .+||+|++
T Consensus       138 ~~~~~~~~fD~I~~  151 (212)
T PRK13942        138 LGYEENAPYDRIYV  151 (212)
T ss_pred             cCCCcCCCcCEEEE
Confidence                  27999993

>TIGR00740 methyltransferase, putative

Probab=98.91  E-value=1.3e-08  Score=79.94  Aligned_cols=86  Identities=16%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc----CCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC------CCcEEE-ec
Q 031506           70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL------PPSHIC-SR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~----g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~------~fD~Ii-~d  136 (158)
                      ++.+|||+|||+|..++.+++.    +.+++++|+++.  |++.+++++...+.  ++++...|.      .+|+|+ ..
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~--ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~  130 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQP--MVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF  130 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHH--HHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeec
Confidence            5679999999999999977764    568999999965  99999999876543  345544433      689988 77


Q ss_pred             CCCCCc--cHHHHHHHHHHHhcC
Q 031506          137 VLQDQS--SLRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~~--~~~~ll~tl~~ll~~  157 (158)
                      ++.+..  ....+++.+...|.+
T Consensus       131 ~l~~~~~~~~~~~l~~i~~~Lkp  153 (239)
T TIGR00740       131 TLQFLPPEDRIALLTKIYEGLNP  153 (239)
T ss_pred             chhhCCHHHHHHHHHHHHHhcCC
Confidence            776653  356788888887765

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.91  E-value=8.6e-09  Score=84.81  Aligned_cols=83  Identities=19%  Similarity=0.260  Sum_probs=67.5

Q ss_pred             cccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-----C----CCCcEEE
Q 031506           65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-----S----LPPSHIC  134 (158)
Q Consensus        65 ~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-----d----~~fD~Ii  134 (158)
                      +..+++++.|||+|||+|+++..+++.|+ +|.+++-++   |.+.+++-++.|.+..++...     |    .+.|+||
T Consensus       172 N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~---MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviI  248 (517)
T KOG1500|consen  172 NHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE---MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVII  248 (517)
T ss_pred             cccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH---HHHHHHHHHhcCCccceEEEccCccccccCchhccEEE
Confidence            34688999999999999999999999998 999999975   999999999999876655433     2    2899999


Q ss_pred             ecCCCCCccHHHHHHH
Q 031506          135 SRVLQDQSSLRLIIIE  150 (158)
Q Consensus       135 ~d~iy~~~~~~~ll~t  150 (158)
                      ++|+-+.-.-+.++.+
T Consensus       249 SEPMG~mL~NERMLEs  264 (517)
T KOG1500|consen  249 SEPMGYMLVNERMLES  264 (517)
T ss_pred             eccchhhhhhHHHHHH
Confidence            9998665555555554

>PHA03411 putative methyltransferase; Provisional

Probab=98.91  E-value=5.9e-09  Score=83.94  Aligned_cols=86  Identities=10%  Similarity=0.103  Sum_probs=59.5

Q ss_pred             CceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEE
Q 031506           47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL  124 (158)
Q Consensus        47 ~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~  124 (158)
                      .|...=|.+++ ..|+..   .....+|||+|||+|.+++.++++  +.+|+++|+++.  |++.+++|..    .+.+.
T Consensus        45 ~G~FfTP~~i~-~~f~~~---~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~--al~~Ar~n~~----~v~~v  114 (279)
T PHA03411         45 SGAFFTPEGLA-WDFTID---AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE--FARIGKRLLP----EAEWI  114 (279)
T ss_pred             ceeEcCCHHHH-HHHHhc---cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHhCc----CCEEE
Confidence            45555566653 344432   123468999999999999987765  459999999975  9999888753    23333


Q ss_pred             EcC-------CCCcEEEecCCCCCc
Q 031506          125 MTS-------LPPSHICSRVLQDQS  142 (158)
Q Consensus       125 ~~d-------~~fD~Ii~d~iy~~~  142 (158)
                      ..|       .+||+|+++|+|+..
T Consensus       115 ~~D~~e~~~~~kFDlIIsNPPF~~l  139 (279)
T PHA03411        115 TSDVFEFESNEKFDVVISNPPFGKI  139 (279)
T ss_pred             ECchhhhcccCCCcEEEEcCCcccc
Confidence            332       379999988887763

>PRK04266 fibrillarin; Provisional

Probab=98.89  E-value=4.9e-08  Score=76.70  Aligned_cols=107  Identities=17%  Similarity=0.136  Sum_probs=67.6

Q ss_pred             CCceEecch------HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHc
Q 031506           46 EYGLFVWPC------SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN  117 (158)
Q Consensus        46 ~~g~~vW~~------~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n  117 (158)
                      +.++++|..      +..++.+  +.....++.+|||+|||||..++.+++..  .+|+++|.++.  |++.+.++++..
T Consensus        44 ~~~~~~~~~~r~~~~~~ll~~~--~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~--ml~~l~~~a~~~  119 (226)
T PRK04266         44 GVEYREWNPRRSKLAAAILKGL--KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPR--PMRELLEVAEER  119 (226)
T ss_pred             CcEEEEECCCccchHHHHHhhH--hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHH--HHHHHHHHhhhc
Confidence            455677743      4444443  12233467899999999999999888763  48999999975  888777776642


Q ss_pred             CCcceEEEc-----------CCCCcEEEecCCCCCccHHHHHHHHHHHhcCC
Q 031506          118 KLNCRLLMT-----------SLPPSHICSRVLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       118 ~~~~~~~~~-----------d~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                       .++.....           ..+||+|++|... +.....+++.+..+|+++
T Consensus       120 -~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~-p~~~~~~L~~~~r~LKpG  169 (226)
T PRK04266        120 -KNIIPILADARKPERYAHVVEKVDVIYQDVAQ-PNQAEIAIDNAEFFLKDG  169 (226)
T ss_pred             -CCcEEEECCCCCcchhhhccccCCEEEECCCC-hhHHHHHHHHHHHhcCCC
Confidence             11222211           2268998855332 223344577777777653

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.8e-08  Score=78.03  Aligned_cols=86  Identities=19%  Similarity=0.141  Sum_probs=69.1

Q ss_pred             CceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEE
Q 031506           47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLM  125 (158)
Q Consensus        47 ~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~  125 (158)
                      .|.-.|-++..+...+.+.....++.+|||+|||||..+-.+|+...+|+.+|..+.  ..+.+++|++..+. ++.+..
T Consensus        49 i~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~--L~~~A~~~L~~lg~~nV~v~~  126 (209)
T COG2518          49 IGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEE--LAEQARRNLETLGYENVTVRH  126 (209)
T ss_pred             CCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHH--HHHHHHHHHHHcCCCceEEEE
Confidence            344456666666666666555567899999999999999999999889999999964  88999999999887 466665


Q ss_pred             cCC--------CCcEEE
Q 031506          126 TSL--------PPSHIC  134 (158)
Q Consensus       126 ~d~--------~fD~Ii  134 (158)
                      .|.        +||.|+
T Consensus       127 gDG~~G~~~~aPyD~I~  143 (209)
T COG2518         127 GDGSKGWPEEAPYDRII  143 (209)
T ss_pred             CCcccCCCCCCCcCEEE
Confidence            553        899999

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.88  E-value=1e-08  Score=84.95  Aligned_cols=85  Identities=19%  Similarity=0.191  Sum_probs=66.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCcEEE-ecCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPSHIC-SRVL  138 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD~Ii-~d~i  138 (158)
                      .+.+|||+|||+|..++.+++.  +.+|+++|.++.  |++.+++|...+++  ++...        +..||+|+ ++++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~--mL~~A~~k~~~~~i--~~i~gD~e~lp~~~~sFDvVIs~~~L  188 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH--QLAKAKQKEPLKEC--KIIEGDAEDLPFPTDYADRYVSAGSI  188 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHhhhccCC--eEEeccHHhCCCCCCceeEEEEcChh
Confidence            4679999999999999877764  359999999965  99999988764433  33322        22799999 8999


Q ss_pred             CCCccHHHHHHHHHHHhcCC
Q 031506          139 QDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       139 y~~~~~~~ll~tl~~ll~~~  158 (158)
                      ++..+.+.+++.+..+|.++
T Consensus       189 ~~~~d~~~~L~e~~rvLkPG  208 (340)
T PLN02490        189 EYWPDPQRGIKEAYRVLKIG  208 (340)
T ss_pred             hhCCCHHHHHHHHHHhcCCC
Confidence            88888889999999888753

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.86  E-value=7.4e-08  Score=73.52  Aligned_cols=84  Identities=19%  Similarity=0.287  Sum_probs=61.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC---------CCcEEEec
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL---------PPSHICSR  136 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~---------~fD~Ii~d  136 (158)
                      .++.+|||+|||+|.+++.+++.  +.+|+++|.++.  +++.+++|++.+++. +.+...|.         .+|.|+.+
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~--~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~  116 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEE--VVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE  116 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence            46779999999999999988764  369999999965  999999999887653 34443321         45766633


Q ss_pred             CCCCCccHHHHHHHHHHHhcC
Q 031506          137 VLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .   ....+.+++.+..+|.+
T Consensus       117 ~---~~~~~~~l~~~~~~Lkp  134 (196)
T PRK07402        117 G---GRPIKEILQAVWQYLKP  134 (196)
T ss_pred             C---CcCHHHHHHHHHHhcCC
Confidence            2   23457788888777654

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.85  E-value=2.4e-08  Score=77.76  Aligned_cols=102  Identities=15%  Similarity=0.054  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH-------------cCCc
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-------------NKLN  120 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~-------------n~~~  120 (158)
                      ....|.+|+..... .++.+||++|||.|.-++.+|.+|.+|+++|+++.  +++.+......             .+.+
T Consensus        19 p~~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~--Ai~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (213)
T TIGR03840        19 VNPLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI--AVEQFFAENGLTPTVTQQGEFTRYRAGN   95 (213)
T ss_pred             CCHHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH--HHHHHHHHcCCCcceeccccceeeecCc
Confidence            45667777665321 25679999999999999999999999999999975  88864332111             0122


Q ss_pred             ceEEEcCC---------CCcEEE-ecCCCC--CccHHHHHHHHHHHhcCC
Q 031506          121 CRLLMTSL---------PPSHIC-SRVLQD--QSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       121 ~~~~~~d~---------~fD~Ii-~d~iy~--~~~~~~ll~tl~~ll~~~  158 (158)
                      +++...|.         +||.|+ .-++.+  .+..+..++.+..+|.++
T Consensus        96 v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg  145 (213)
T TIGR03840        96 IEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG  145 (213)
T ss_pred             eEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence            44444332         589999 655433  344566788888888753

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.85  E-value=3.1e-08  Score=76.27  Aligned_cols=86  Identities=15%  Similarity=-0.011  Sum_probs=62.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----------CCCcEEE-
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-----------LPPSHIC-  134 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-----------~~fD~Ii-  134 (158)
                      .+.+|||+|||+|..+..+++..  .+|+++|+++.  +++.+++|++.++.. +.+...|           ..||+|+ 
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~--~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~  117 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEP--GVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL  117 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechH--HHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence            46789999999999999887753  48999999975  999999999887652 3433332           2699999 


Q ss_pred             ecCC-CCC-c------cHHHHHHHHHHHhcC
Q 031506          135 SRVL-QDQ-S------SLRLIIIEVGIILLS  157 (158)
Q Consensus       135 ~d~i-y~~-~------~~~~ll~tl~~ll~~  157 (158)
                      .-+. +.. .      ..+.+++.+..+|.+
T Consensus       118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp  148 (202)
T PRK00121        118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKP  148 (202)
T ss_pred             ECCCCCCCccccccccCCHHHHHHHHHHcCC
Confidence            4322 211 1      247788888888765

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.84  E-value=5.1e-08  Score=82.14  Aligned_cols=87  Identities=24%  Similarity=0.107  Sum_probs=68.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcc---eEEEcC------------CCCcE
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC---RLLMTS------------LPPSH  132 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~---~~~~~d------------~~fD~  132 (158)
                      .+|++||+|-|=||.+|+.+|..|+ +|+.+|++..  +++.+++|.++|++..   +....|            .+||+
T Consensus       216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~--al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl  293 (393)
T COG1092         216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKR--ALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL  293 (393)
T ss_pred             ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHH--HHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence            3589999999999999999999999 9999999986  9999999999999853   333332            28999


Q ss_pred             EEecCCCCCcc----------HHHHHHHHHHHhcC
Q 031506          133 ICSRVLQDQSS----------LRLIIIEVGIILLS  157 (158)
Q Consensus       133 Ii~d~iy~~~~----------~~~ll~tl~~ll~~  157 (158)
                      |+.||+=+..+          +.+|+.....||.+
T Consensus       294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p  328 (393)
T COG1092         294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP  328 (393)
T ss_pred             EEECCcccccCcccchhHHHHHHHHHHHHHHHcCC
Confidence            99998855433          45555555555543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.84  E-value=1.2e-09  Score=85.52  Aligned_cols=86  Identities=21%  Similarity=0.210  Sum_probs=66.1

Q ss_pred             CCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc----ceEE--EcCCCCcEEE-ecCCCCCcc
Q 031506           71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN----CRLL--MTSLPPSHIC-SRVLQDQSS  143 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~----~~~~--~~d~~fD~Ii-~d~iy~~~~  143 (158)
                      =+++||||||||+.|..+-.+..+++++|+|+.  |++.+.++=--..+-    +.+.  .-+.+||+|. +|++-|...
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~n--Ml~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~  203 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISEN--MLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA  203 (287)
T ss_pred             cceeeecccCcCcccHhHHHHHhhccCCchhHH--HHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcc
Confidence            368999999999999999888889999999986  998766532111110    1111  1134999999 999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 031506          144 LRLIIIEVGIILLSS  158 (158)
Q Consensus       144 ~~~ll~tl~~ll~~~  158 (158)
                      ++.++....-+|.++
T Consensus       204 Le~~~~~aa~~L~~g  218 (287)
T COG4976         204 LEGLFAGAAGLLAPG  218 (287)
T ss_pred             hhhHHHHHHHhcCCC
Confidence            999999999888764

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=98.83  E-value=6.3e-09  Score=83.52  Aligned_cols=101  Identities=32%  Similarity=0.466  Sum_probs=74.3

Q ss_pred             CCceEecchHHHHHHHHHhc---ccCCCCCeEEEeccCCCHHHHHHhhcC-CEEEEEecCChHHHHH-----HHHHHHHH
Q 031506           46 EYGLFVWPCSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLK-----NMRRVCEM  116 (158)
Q Consensus        46 ~~g~~vW~~~~~la~~l~~~---~~~~~~~~vLELG~GtGl~~i~~a~~g-~~v~~tD~~~~~~~l~-----~~~~n~~~  116 (158)
                      ..|++.|.++..+..++...   .-.+.+++|||||||+|+.++.+.+.| ..+.+.|++..  .++     ++..|...
T Consensus        89 EGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~--vl~~~t~pn~~~~~~~  166 (282)
T KOG2920|consen   89 EGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAE--VLRLVTLPNILVNSHA  166 (282)
T ss_pred             ecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchh--heeeecccceecchhh
Confidence            58999999999999999865   445689999999999999999998888 59999999974  542     22222211


Q ss_pred             c----CC-c-ceEEEc---CC--------CCcEEE-ecCCCCCccHHHHH
Q 031506          117 N----KL-N-CRLLMT---SL--------PPSHIC-SRVLQDQSSLRLII  148 (158)
Q Consensus       117 n----~~-~-~~~~~~---d~--------~fD~Ii-~d~iy~~~~~~~ll  148 (158)
                      +    .. . ..+...   ||        .||+|+ +..+|.....+.+.
T Consensus       167 ~~~~~e~~~~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~  216 (282)
T KOG2920|consen  167 GVEEKENHKVDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLY  216 (282)
T ss_pred             hhhhhhcccceeccccccccchhhhccccchhhhhhhhhhhCcchhhhhH
Confidence            1    10 0 111111   22        799999 99999999988773

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.81  E-value=8.6e-08  Score=73.45  Aligned_cols=85  Identities=20%  Similarity=0.226  Sum_probs=66.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRV  137 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~  137 (158)
                      ++.+|||+|||+|..+..+++.+.   +++++|+++.  +++.+++|.. ...++++...|        .+||+|+ +..
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~--~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~  115 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE--MLEVAKKKSE-LPLNIEFIQADAEALPFEDNSFDAVTIAFG  115 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH--HHHHHHHHhc-cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence            678999999999999997777654   8999999965  8898888875 22223333222        2799999 888


Q ss_pred             CCCCccHHHHHHHHHHHhcC
Q 031506          138 LQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +.+......+++.+..+|.+
T Consensus       116 ~~~~~~~~~~l~~~~~~L~~  135 (223)
T TIGR01934       116 LRNVTDIQKALREMYRVLKP  135 (223)
T ss_pred             eCCcccHHHHHHHHHHHcCC
Confidence            88888889999998888765

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.79  E-value=1.4e-07  Score=80.68  Aligned_cols=87  Identities=16%  Similarity=0.129  Sum_probs=64.8

Q ss_pred             eEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEE
Q 031506           49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLL  124 (158)
Q Consensus        49 ~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~  124 (158)
                      +.+++.+-.++..+..   ..++.+|||+|||+|..++.+++.   +.+|+++|.++.  +++.+++|++.+++. +.+.
T Consensus       232 ~~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~--~l~~~~~~~~~~g~~~v~~~  306 (445)
T PRK14904        232 VSVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQ--KLEKIRSHASALGITIIETI  306 (445)
T ss_pred             EEEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHH--HHHHHHHHHHHhCCCeEEEE
Confidence            4677655555555543   235789999999999999877653   359999999975  999999999988764 3444


Q ss_pred             EcCC-------CCcEEEecCCCC
Q 031506          125 MTSL-------PPSHICSRVLQD  140 (158)
Q Consensus       125 ~~d~-------~fD~Ii~d~iy~  140 (158)
                      ..|.       +||.|+.|+++.
T Consensus       307 ~~Da~~~~~~~~fD~Vl~D~Pcs  329 (445)
T PRK14904        307 EGDARSFSPEEQPDAILLDAPCT  329 (445)
T ss_pred             eCcccccccCCCCCEEEEcCCCC
Confidence            4332       699999888763

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.78  E-value=4.8e-08  Score=74.64  Aligned_cols=87  Identities=13%  Similarity=0.028  Sum_probs=63.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----------CCCcEEE-
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-----------LPPSHIC-  134 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-----------~~fD~Ii-  134 (158)
                      ...++||+|||+|.+++.+++..  .+|+++|+++.  +++.+++|+..+++. +++...|           ..+|.|+ 
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~--~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~   93 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTP--IVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL   93 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHH--HHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence            45689999999999999888764  48999999975  999999999887653 4444332           2688888 


Q ss_pred             e-cCCCCCccH-------HHHHHHHHHHhcCC
Q 031506          135 S-RVLQDQSSL-------RLIIIEVGIILLSS  158 (158)
Q Consensus       135 ~-d~iy~~~~~-------~~ll~tl~~ll~~~  158 (158)
                      . ..++....+       +.+++.+..+|.++
T Consensus        94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg  125 (194)
T TIGR00091        94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKG  125 (194)
T ss_pred             ECCCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence            3 223333222       67889998888753

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK06922 hypothetical protein; Provisional

Probab=98.78  E-value=4.2e-08  Score=86.92  Aligned_cols=88  Identities=14%  Similarity=0.189  Sum_probs=64.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC----------CCCcEEE-e
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS----------LPPSHIC-S  135 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d----------~~fD~Ii-~  135 (158)
                      .++.+|||+|||+|..+..+++.  +.+|+++|+++.  |++.+++++..++.+..+...|          .+||+|+ +
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~--MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn  494 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISEN--VIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYS  494 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence            46789999999999998877764  459999999975  9999999887665544443232          2799999 5


Q ss_pred             cCCCC-------------CccHHHHHHHHHHHhcCC
Q 031506          136 RVLQD-------------QSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       136 d~iy~-------------~~~~~~ll~tl~~ll~~~  158 (158)
                      .++.+             ......+++.+...|.++
T Consensus       495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG  530 (677)
T PRK06922        495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG  530 (677)
T ss_pred             hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC
Confidence            44332             235677888888777653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.77  E-value=4.8e-08  Score=83.83  Aligned_cols=86  Identities=21%  Similarity=0.150  Sum_probs=62.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc----------CCCCcEEE-ecC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT----------SLPPSHIC-SRV  137 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~----------d~~fD~Ii-~d~  137 (158)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.  |++.+++.... ..++.+...          +.+||+|+ ..+
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~--~l~~a~~~~~~-~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~  112 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIES--VIKKNESINGH-YKNVKFMCADVTSPDLNISDGSVDLIFSNWL  112 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHH--HHHHHHHHhcc-CCceEEEEecccccccCCCCCCEEEEehhhh
Confidence            35679999999999999999998889999999965  88765432111 112233222          12799999 778


Q ss_pred             CCCCcc--HHHHHHHHHHHhcC
Q 031506          138 LQDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       138 iy~~~~--~~~ll~tl~~ll~~  157 (158)
                      +++...  ...+++.+..+|.+
T Consensus       113 l~~l~~~~~~~~l~~~~r~Lk~  134 (475)
T PLN02336        113 LMYLSDKEVENLAERMVKWLKV  134 (475)
T ss_pred             HHhCCHHHHHHHHHHHHHhcCC
Confidence            887655  57888888887765

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.77  E-value=8.3e-08  Score=75.64  Aligned_cols=86  Identities=9%  Similarity=0.021  Sum_probs=61.0

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEc--------------CC
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMT--------------SL  128 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~--------------d~  128 (158)
                      ..+.++|||+|||+|..++.+++.   +.+|+++|.++.  +++.+++|++.+++..  ++...              +.
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~--~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~  143 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKE--AYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP  143 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence            346789999999999988866543   349999999965  9999999999998753  33322              13


Q ss_pred             CCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          129 PPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       129 ~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +||+|+.|.-  .+.+..++..+..++.+
T Consensus       144 ~fD~VfiDa~--k~~y~~~~~~~~~ll~~  170 (234)
T PLN02781        144 EFDFAFVDAD--KPNYVHFHEQLLKLVKV  170 (234)
T ss_pred             CCCEEEECCC--HHHHHHHHHHHHHhcCC
Confidence            7999996643  23444555555555543

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.75  E-value=4.4e-08  Score=77.81  Aligned_cols=82  Identities=15%  Similarity=0.157  Sum_probs=60.0

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------CCc
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------PPS  131 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------~fD  131 (158)
                      +++.+.+.....++.+|||+|||+|.++..+++++..|+++|.++.  +++.++.+.... .++.+...|.      .||
T Consensus        17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~--~~~~l~~~~~~~-~~v~v~~~D~~~~~~~~~d   93 (253)
T TIGR00755        17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPR--LAEILRKLLSLY-ERLEVIEGDALKVDLPDFP   93 (253)
T ss_pred             HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHH--HHHHHHHHhCcC-CcEEEEECchhcCChhHcC
Confidence            3444554444456789999999999999999999899999999975  999988877532 2344444433      356


Q ss_pred             ---EEEecCCCCCc
Q 031506          132 ---HICSRVLQDQS  142 (158)
Q Consensus       132 ---~Ii~d~iy~~~  142 (158)
                         +|+++++|+..
T Consensus        94 ~~~~vvsNlPy~i~  107 (253)
T TIGR00755        94 KQLKVVSNLPYNIS  107 (253)
T ss_pred             CcceEEEcCChhhH
Confidence               66699998864

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.75  E-value=6.7e-08  Score=75.48  Aligned_cols=102  Identities=14%  Similarity=0.088  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc-------------CCc
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-------------KLN  120 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n-------------~~~  120 (158)
                      ....|.+|+.... ..++.+||++|||.|.-++.+|.+|.+|+++|+++.  +++.+.......             ..+
T Consensus        22 p~~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~--Ai~~~~~~~~l~~~~~~~~~~~~~~~~~   98 (218)
T PRK13255         22 VNPLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSEL--AVEQFFAENGLTPQTRQSGEFEHYQAGE   98 (218)
T ss_pred             CCHHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHH--HHHHHHHHcCCCccccccccccccccCc
Confidence            3445666665321 124679999999999999999999999999999975  888653211100             112


Q ss_pred             ceEEEcCC---------CCcEEE-ecCCCC--CccHHHHHHHHHHHhcCC
Q 031506          121 CRLLMTSL---------PPSHIC-SRVLQD--QSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       121 ~~~~~~d~---------~fD~Ii-~d~iy~--~~~~~~ll~tl~~ll~~~  158 (158)
                      ++++..|.         .||+|+ .-++.+  .+..+..++.+..+|.++
T Consensus        99 v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg  148 (218)
T PRK13255         99 ITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG  148 (218)
T ss_pred             eEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence            33333322         688998 554433  445678888888888753

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.73  E-value=1.2e-07  Score=75.93  Aligned_cols=85  Identities=8%  Similarity=-0.081  Sum_probs=61.7

Q ss_pred             ecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc
Q 031506           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT  126 (158)
Q Consensus        51 vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~  126 (158)
                      ...++...+ +++.   ..++.+|||+|||+|..++.++++   ...|+++|.++.  +++.+++|++.+++. +.+...
T Consensus        56 qd~~s~~~~-~~l~---~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~--~l~~~~~n~~~~g~~~v~~~~~  129 (264)
T TIGR00446        56 QEASSMIPP-LALE---PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKS--RTKVLIANINRCGVLNVAVTNF  129 (264)
T ss_pred             ECHHHHHHH-HHhC---CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHH--HHHHHHHHHHHcCCCcEEEecC
Confidence            344554444 4432   235789999999999999977664   248999999975  999999999998864 344433


Q ss_pred             C--------CCCcEEEecCCCCC
Q 031506          127 S--------LPPSHICSRVLQDQ  141 (158)
Q Consensus       127 d--------~~fD~Ii~d~iy~~  141 (158)
                      |        ..||.|+.|+++..
T Consensus       130 D~~~~~~~~~~fD~Vl~D~Pcsg  152 (264)
T TIGR00446       130 DGRVFGAAVPKFDAILLDAPCSG  152 (264)
T ss_pred             CHHHhhhhccCCCEEEEcCCCCC
Confidence            3        26999998887653

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.73  E-value=3.3e-08  Score=77.81  Aligned_cols=63  Identities=21%  Similarity=0.109  Sum_probs=53.2

Q ss_pred             EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHH-HHHHHH
Q 031506           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-NMRRVC  114 (158)
Q Consensus        50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~-~~~~n~  114 (158)
                      .++.++..|...+......+++++|||+|||||.++..+++.|+ +|+++|.++.  |+. .+++|.
T Consensus        55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~--~l~~~l~~~~  119 (228)
T TIGR00478        55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYN--QLAEKLRQDE  119 (228)
T ss_pred             hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHH--HHHHHHhcCC
Confidence            66889999999998877677899999999999999999999987 8999999974  555 455543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.73  E-value=2.1e-07  Score=75.66  Aligned_cols=86  Identities=9%  Similarity=0.050  Sum_probs=66.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC------CCcEEE-ecC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL------PPSHIC-SRV  137 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~------~fD~Ii-~d~  137 (158)
                      .++.+|||+|||+|..++.+++..  .+++++|+   +++++.+++|+...++.  +.+...|.      .+|+|+ +.+
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~---~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~  224 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL---PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRI  224 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec---HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhh
Confidence            355799999999999999888875  48999998   35899999999988765  33444432      579999 998


Q ss_pred             CCCCcc--HHHHHHHHHHHhcC
Q 031506          138 LQDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       138 iy~~~~--~~~ll~tl~~ll~~  157 (158)
                      +++...  ...+++.+...|.+
T Consensus       225 lh~~~~~~~~~il~~~~~~L~p  246 (306)
T TIGR02716       225 LYSANEQLSTIMCKKAFDAMRS  246 (306)
T ss_pred             hhcCChHHHHHHHHHHHHhcCC
Confidence            876533  45788888877765

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.72  E-value=1.7e-07  Score=80.12  Aligned_cols=82  Identities=15%  Similarity=0.016  Sum_probs=60.6

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-  127 (158)
                      .++..++.++.    ..++.+|||+|||+|..++.++++   ..+|+++|+++.  +++.+++|++.+++. +.+...| 
T Consensus       237 ~~s~lv~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~--~l~~~~~n~~~~g~~~v~~~~~D~  310 (444)
T PRK14902        237 ESSMLVAPALD----PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEH--KLKLIEENAKRLGLTNIETKALDA  310 (444)
T ss_pred             hHHHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCeEEEEeCCc
Confidence            34445554442    235679999999999999987764   359999999965  999999999988764 3443332 


Q ss_pred             --------CCCcEEEecCCCC
Q 031506          128 --------LPPSHICSRVLQD  140 (158)
Q Consensus       128 --------~~fD~Ii~d~iy~  140 (158)
                              ..||+|++|+++.
T Consensus       311 ~~~~~~~~~~fD~Vl~D~Pcs  331 (444)
T PRK14902        311 RKVHEKFAEKFDKILVDAPCS  331 (444)
T ss_pred             ccccchhcccCCEEEEcCCCC
Confidence                    2699999888754

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.70  E-value=5.6e-08  Score=73.90  Aligned_cols=83  Identities=17%  Similarity=0.225  Sum_probs=64.2

Q ss_pred             Eec---chHHHHHHHHHhccc----CCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc
Q 031506           50 FVW---PCSVILAEYVWQQRY----RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN  120 (158)
Q Consensus        50 ~vW---~~~~~la~~l~~~~~----~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~  120 (158)
                      -+|   ++...+.+|+..+..    .....+|||||||.|.+-.-+++.|.  ..+++|+++.  +++.++.-++.++..
T Consensus        40 EvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~--AV~LA~niAe~~~~~  117 (227)
T KOG1271|consen   40 EVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEK--AVELAQNIAERDGFS  117 (227)
T ss_pred             ceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHH--HHHHHHHHHHhcCCC
Confidence            456   677888999887543    22233999999999999998999886  5999999976  888877777777776


Q ss_pred             --ceEEEcCC--------CCcEEE
Q 031506          121 --CRLLMTSL--------PPSHIC  134 (158)
Q Consensus       121 --~~~~~~d~--------~fD~Ii  134 (158)
                        +++.+.|.        +||+|+
T Consensus       118 n~I~f~q~DI~~~~~~~~qfdlvl  141 (227)
T KOG1271|consen  118 NEIRFQQLDITDPDFLSGQFDLVL  141 (227)
T ss_pred             cceeEEEeeccCCcccccceeEEe
Confidence              56666654        688887

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.69  E-value=2.5e-07  Score=78.97  Aligned_cols=70  Identities=13%  Similarity=0.065  Sum_probs=56.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---------CCCcEEEe
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---------LPPSHICS  135 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---------~~fD~Ii~  135 (158)
                      .++.+|||+|||+|..++.++..   +.+|+++|+++.  +++.+++|++..++. +.+...|         .+||.|+.
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~--rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISRE--KIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence            35779999999999999877764   459999999975  999999999988764 3444333         26999998


Q ss_pred             cCCCC
Q 031506          136 RVLQD  140 (158)
Q Consensus       136 d~iy~  140 (158)
                      |++|.
T Consensus       314 DaPCs  318 (431)
T PRK14903        314 DAPCT  318 (431)
T ss_pred             CCCCC
Confidence            88874

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=1.8e-07  Score=79.83  Aligned_cols=95  Identities=16%  Similarity=0.154  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------  127 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------  127 (158)
                      +..|.++........++.++|||=||.|.+|+.+|+...+|+++++++.  +++.+++|++.|++. +.+...+      
T Consensus       278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~--aV~~A~~NA~~n~i~N~~f~~~~ae~~~~  355 (432)
T COG2265         278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPE--AVEAAQENAAANGIDNVEFIAGDAEEFTP  355 (432)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHH--HHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence            5566666666555556789999999999999999999999999999964  999999999999986 4444331      


Q ss_pred             -----CCCcEEEecCCCCCccHHHHHHHHH
Q 031506          128 -----LPPSHICSRVLQDQSSLRLIIIEVG  152 (158)
Q Consensus       128 -----~~fD~Ii~d~iy~~~~~~~ll~tl~  152 (158)
                           ..||.|+.||+=---. +++++.+.
T Consensus       356 ~~~~~~~~d~VvvDPPR~G~~-~~~lk~l~  384 (432)
T COG2265         356 AWWEGYKPDVVVVDPPRAGAD-REVLKQLA  384 (432)
T ss_pred             hccccCCCCEEEECCCCCCCC-HHHHHHHH
Confidence                 2789999999865443 34444443

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.69  E-value=1.3e-07  Score=79.39  Aligned_cols=67  Identities=12%  Similarity=0.079  Sum_probs=55.2

Q ss_pred             CCeEEEeccCCCHHHHHHhhc--CC-EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---------CCCcEEEecC
Q 031506           71 GANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---------LPPSHICSRV  137 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~--g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---------~~fD~Ii~d~  137 (158)
                      +.+|||+.||+|..|+.+++.  |+ +|++.|+++.  +++.+++|++.|++. +.+...|         .+||+|..||
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~--Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP  122 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPK--AVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP  122 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHH--HHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence            358999999999999988886  54 8999999965  999999999999875 4444332         2799999999


Q ss_pred             CCC
Q 031506          138 LQD  140 (158)
Q Consensus       138 iy~  140 (158)
                       |.
T Consensus       123 -fG  124 (374)
T TIGR00308       123 -FG  124 (374)
T ss_pred             -CC
Confidence             54

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.67  E-value=3e-07  Score=74.58  Aligned_cols=98  Identities=20%  Similarity=0.133  Sum_probs=63.8

Q ss_pred             EEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHH
Q 031506           37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCE  115 (158)
Q Consensus        37 ~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~  115 (158)
                      ..+.-..+..+|+..  .-...=.|+.+.   .++++||++-|=||.+|+.+++.|+ +|+.+|.+..  +++.+++|+.
T Consensus        95 f~v~l~~gqktGlFl--DqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~--al~~a~~N~~  167 (286)
T PF10672_consen   95 FRVDLTDGQKTGLFL--DQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKR--ALEWAKENAA  167 (286)
T ss_dssp             EEEESSSSSSTSS-G--GGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HH--HHHHHHHHHH
T ss_pred             EEEEcCCCCcceEcH--HHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHH
Confidence            333333345677652  222222333332   3688999999999999999999998 8999999976  9999999999


Q ss_pred             HcCCc---ceEEEcC-----------CCCcEEEecCCCCC
Q 031506          116 MNKLN---CRLLMTS-----------LPPSHICSRVLQDQ  141 (158)
Q Consensus       116 ~n~~~---~~~~~~d-----------~~fD~Ii~d~iy~~  141 (158)
                      +|++.   .++...|           .+||+||.||+=+.
T Consensus       168 lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~  207 (286)
T PF10672_consen  168 LNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA  207 (286)
T ss_dssp             HTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEE
T ss_pred             HcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCC
Confidence            99975   3344443           28999998887443

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.65  E-value=4.3e-07  Score=77.33  Aligned_cols=83  Identities=10%  Similarity=-0.033  Sum_probs=62.1

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHHHHcCCcceE--EEcC-
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LMTS-  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~~d-  127 (158)
                      .++..++.++.    ..++.+|||+|||+|..++.+++. + .+|+++|.++.  +++.+++|++.+++.+.+  ...| 
T Consensus       225 ~~s~~~~~~L~----~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~--~l~~~~~n~~r~g~~~~v~~~~~d~  298 (426)
T TIGR00563       225 ASAQWVATWLA----PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEH--RLKRVYENLKRLGLTIKAETKDGDG  298 (426)
T ss_pred             HHHHHHHHHhC----CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHH--HHHHHHHHHHHcCCCeEEEEecccc
Confidence            45666666553    235679999999999999987764 3 59999999975  999999999998876443  2221 


Q ss_pred             ---------CCCcEEEecCCCCC
Q 031506          128 ---------LPPSHICSRVLQDQ  141 (158)
Q Consensus       128 ---------~~fD~Ii~d~iy~~  141 (158)
                               .+||.|+.|+++..
T Consensus       299 ~~~~~~~~~~~fD~VllDaPcSg  321 (426)
T TIGR00563       299 RGPSQWAENEQFDRILLDAPCSA  321 (426)
T ss_pred             ccccccccccccCEEEEcCCCCC
Confidence                     25999998876553

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.63  E-value=1.3e-07  Score=78.75  Aligned_cols=88  Identities=15%  Similarity=0.098  Sum_probs=60.1

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc-----
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT-----  126 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~-----  126 (158)
                      .....|.+++.+.....++ ++|||-||+|.+|+.+|+.+.+|+++|.++.  +++.+++|++.|++. +.+...     
T Consensus       180 ~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~--av~~A~~Na~~N~i~n~~f~~~~~~~~  256 (352)
T PF05958_consen  180 EQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEE--AVEDARENAKLNGIDNVEFIRGDAEDF  256 (352)
T ss_dssp             HHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HH--HHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred             HHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHH--HHHHHHHHHHHcCCCcceEEEeeccch
Confidence            4556666666654433334 7999999999999999999999999999965  999999999999975 333321     


Q ss_pred             -------------------CCCCcEEEecCCCCCcc
Q 031506          127 -------------------SLPPSHICSRVLQDQSS  143 (158)
Q Consensus       127 -------------------d~~fD~Ii~d~iy~~~~  143 (158)
                                         +..+|+|+.||+=..-.
T Consensus       257 ~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~  292 (352)
T PF05958_consen  257 AKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD  292 (352)
T ss_dssp             CCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred             hHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence                               01579999999865544

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.63  E-value=2.1e-07  Score=74.65  Aligned_cols=87  Identities=16%  Similarity=0.118  Sum_probs=60.3

Q ss_pred             CCCeEEEeccCCCH----HHHHHhhc-------CCEEEEEecCChHHHHHHHHHHHH----HcCC---------------
Q 031506           70 SGANVVELGAGTSL----PGLVAAKV-------GSNVTLTDDSNRIEVLKNMRRVCE----MNKL---------------  119 (158)
Q Consensus        70 ~~~~vLELG~GtGl----~~i~~a~~-------g~~v~~tD~~~~~~~l~~~~~n~~----~n~~---------------  119 (158)
                      ++.+|+|+|||||-    +++.+++.       +.+|++||+++.  |++.+++++-    ..++               
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~--~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~  176 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK--ALEKARAGIYPERELEDLPKALLARYFSRVEDK  176 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH--HHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence            45699999999995    56655543       348999999975  9999888641    1111               


Q ss_pred             ---------cceEEEcC--------CCCcEEE-ecCCCCCc--cHHHHHHHHHHHhcCC
Q 031506          120 ---------NCRLLMTS--------LPPSHIC-SRVLQDQS--SLRLIIIEVGIILLSS  158 (158)
Q Consensus       120 ---------~~~~~~~d--------~~fD~Ii-~d~iy~~~--~~~~ll~tl~~ll~~~  158 (158)
                               .+.+...|        .+||+|+ .+++.|.+  ....+++.+...|.++
T Consensus       177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG  235 (264)
T smart00138      177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG  235 (264)
T ss_pred             EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence                     12233322        2799999 78886653  5567999998888753

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.62  E-value=8.5e-08  Score=74.66  Aligned_cols=83  Identities=18%  Similarity=0.157  Sum_probs=65.5

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------CCCcEEE-ecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------LPPSHIC-SRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------~~fD~Ii-~d~iy  139 (158)
                      ...+|.|||||+|..+.+++++  ++.|+++|-|+.  |++.++..+-    ++++...|       .++|+|+ +-++.
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~--Mla~Aa~rlp----~~~f~~aDl~~w~p~~~~dllfaNAvlq  103 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPA--MLAKAAQRLP----DATFEEADLRTWKPEQPTDLLFANAVLQ  103 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHH--HHHHHHHhCC----CCceecccHhhcCCCCccchhhhhhhhh
Confidence            5568999999999999999987  469999999964  9988755332    34443333       3899999 88889


Q ss_pred             CCccHHHHHHHHHHHhcCC
Q 031506          140 DQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll~~~  158 (158)
                      +.+++.+|+..+-..|.++
T Consensus       104 WlpdH~~ll~rL~~~L~Pg  122 (257)
T COG4106         104 WLPDHPELLPRLVSQLAPG  122 (257)
T ss_pred             hccccHHHHHHHHHhhCCC
Confidence            9999999999988877653

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.61  E-value=1.7e-07  Score=71.43  Aligned_cols=80  Identities=15%  Similarity=0.012  Sum_probs=57.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcc---eEEE----c-CCCCcEEE-ecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC---RLLM----T-SLPPSHIC-SRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~---~~~~----~-d~~fD~Ii-~d~iy  139 (158)
                      ++.+|||+|||+|.++..+++. +..++++|+++.  +++.++++    ++..   .+..    . +.+||+|+ +.+++
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~--~i~~a~~~----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~   86 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQD--GVLACVAR----GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ   86 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHH--HHHHHHHc----CCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence            4568999999999999877654 558899999964  88776542    2221   1111    1 23799999 99999


Q ss_pred             CCccHHHHHHHHHHHh
Q 031506          140 DQSSLRLIIIEVGIIL  155 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll  155 (158)
                      +..+...+++.+...+
T Consensus        87 ~~~d~~~~l~e~~r~~  102 (194)
T TIGR02081        87 ATRNPEEILDEMLRVG  102 (194)
T ss_pred             cCcCHHHHHHHHHHhC
Confidence            9988888888776543

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=1.8e-07  Score=70.98  Aligned_cols=93  Identities=16%  Similarity=0.153  Sum_probs=70.6

Q ss_pred             chHHHHHHHHHhcccCC---CCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506           53 PCSVILAEYVWQQRYRF---SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT  126 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~---~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~  126 (158)
                      +.+..|.+-+++.....   ..+.++|+|||+|.++-.+++. +  +...+||+++.  +++...+.+..|+....+...
T Consensus        23 EDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~--A~~~Tl~TA~~n~~~~~~V~t  100 (209)
T KOG3191|consen   23 EDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPE--ALEATLETARCNRVHIDVVRT  100 (209)
T ss_pred             chhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHH--HHHHHHHHHHhcCCccceeeh
Confidence            45666777666543222   3567999999999999987764 3  47899999964  999999999999988776666


Q ss_pred             CC-------CCcEEEecCCCCCccHHHH
Q 031506          127 SL-------PPSHICSRVLQDQSSLRLI  147 (158)
Q Consensus       127 d~-------~fD~Ii~d~iy~~~~~~~l  147 (158)
                      |.       +.|+++.+|+|-+...+++
T Consensus       101 dl~~~l~~~~VDvLvfNPPYVpt~~~~i  128 (209)
T KOG3191|consen  101 DLLSGLRNESVDVLVFNPPYVPTSDEEI  128 (209)
T ss_pred             hHHhhhccCCccEEEECCCcCcCCcccc
Confidence            54       8999999999887664444

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.59  E-value=2.9e-07  Score=77.54  Aligned_cols=75  Identities=16%  Similarity=0.163  Sum_probs=57.4

Q ss_pred             CCeEEEeccCCCHHHHHHhhc-CC-EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC--------CCCcEEEecCCC
Q 031506           71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS--------LPPSHICSRVLQ  139 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~-g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d--------~~fD~Ii~d~iy  139 (158)
                      +.+|||++||+|..|+.+++. ++ +|+++|+++.  +++.+++|++.|++. ..+...|        .+||+|+.||+ 
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~--Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPD--AVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC-
Confidence            468999999999999988764 43 8999999965  999999999999875 2343333        36999999985 


Q ss_pred             CCccHHHHHHH
Q 031506          140 DQSSLRLIIIE  150 (158)
Q Consensus       140 ~~~~~~~ll~t  150 (158)
                        ....++++.
T Consensus       135 --Gs~~~~l~~  143 (382)
T PRK04338        135 --GSPAPFLDS  143 (382)
T ss_pred             --CCcHHHHHH
Confidence              333444444

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.58  E-value=4.3e-07  Score=59.70  Aligned_cols=83  Identities=25%  Similarity=0.223  Sum_probs=59.1

Q ss_pred             eEEEeccCCCHHHHHHhh-cCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEc---------CCCCcEEE-ecCCCC
Q 031506           73 NVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMT---------SLPPSHIC-SRVLQD  140 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~---------d~~fD~Ii-~d~iy~  140 (158)
                      +++|+|||+|..+..+++ .+.+++++|.++.  +++.++++...+.. ..++...         ..+||+|+ ..++++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPV--ALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence            489999999999998877 4569999999975  77777754333321 2333322         22799999 677676


Q ss_pred             -CccHHHHHHHHHHHhcC
Q 031506          141 -QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       141 -~~~~~~ll~tl~~ll~~  157 (158)
                       ......+++.+...+.+
T Consensus        79 ~~~~~~~~l~~~~~~l~~   96 (107)
T cd02440          79 LVEDLARFLEEARRLLKP   96 (107)
T ss_pred             hhhHHHHHHHHHHHHcCC
Confidence             77888888888776643

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03438 probable methyltransferase

Probab=98.58  E-value=4.3e-07  Score=73.98  Aligned_cols=86  Identities=16%  Similarity=0.177  Sum_probs=59.7

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcC--CcceEEEcCC--------CC----cE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRLLMTSL--------PP----SH  132 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~~d~--------~f----D~  132 (158)
                      ++.+|||||||||..+..+++.   +.+++++|+|+.  |++.+++++....  +++.....|.        .+    .+
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~--mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISAD--ALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHH--HHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence            4578999999999999977766   579999999975  9999999887643  3343333332        23    33


Q ss_pred             EE-e-cCCCCCc--cHHHHHHHHHHHhcC
Q 031506          133 IC-S-RVLQDQS--SLRLIIIEVGIILLS  157 (158)
Q Consensus       133 Ii-~-d~iy~~~--~~~~ll~tl~~ll~~  157 (158)
                      ++ . .++++.+  ....+++.++..|.+
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~p  169 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGP  169 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCC
Confidence            44 4 4565543  456678888777654

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.58  E-value=9.1e-07  Score=67.38  Aligned_cols=84  Identities=18%  Similarity=0.188  Sum_probs=61.2

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc-------CC-CCcEEE-e
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT-------SL-PPSHIC-S  135 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~-------d~-~fD~Ii-~  135 (158)
                      ..++.+++|+|||||.+++.++..+.  +|+++|.++.  +++.+++|++..+.+ +.+...       +. .||.|+ -
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~--a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIG  109 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEE--ALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIG  109 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHH--HHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEEC
Confidence            34678999999999999998886554  9999999965  999999999998854 333322       22 599998 4


Q ss_pred             cCCCCCccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      --    ..++.++++....|++
T Consensus       110 Gg----~~i~~ile~~~~~l~~  127 (187)
T COG2242         110 GG----GNIEEILEAAWERLKP  127 (187)
T ss_pred             CC----CCHHHHHHHHHHHcCc
Confidence            33    4455666665554443

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.58  E-value=2.5e-07  Score=71.89  Aligned_cols=79  Identities=15%  Similarity=0.234  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CC--EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC-
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL-  128 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~-  128 (158)
                      ++..+...+.+.....++.+|||+|||||..+-++++. |.  .|+.+|..+.  +.+.+++|++..+.. +.+...|. 
T Consensus        56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~--l~~~A~~~l~~~~~~nv~~~~gdg~  133 (209)
T PF01135_consen   56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPE--LAERARRNLARLGIDNVEVVVGDGS  133 (209)
T ss_dssp             --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHH--HHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHH--HHHHHHHHHHHhccCceeEEEcchh
Confidence            44444445555555568899999999999999988876 43  6999999964  899999999988764 55554442 


Q ss_pred             -------CCcEEE
Q 031506          129 -------PPSHIC  134 (158)
Q Consensus       129 -------~fD~Ii  134 (158)
                             +||.|+
T Consensus       134 ~g~~~~apfD~I~  146 (209)
T PF01135_consen  134 EGWPEEAPFDRII  146 (209)
T ss_dssp             GTTGGG-SEEEEE
T ss_pred             hccccCCCcCEEE
Confidence                   899999

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.57  E-value=4e-07  Score=75.09  Aligned_cols=77  Identities=18%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-----  127 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-----  127 (158)
                      .+..++.+.....++.+|||+|||+|..++.+++...   .|+++|.++.  +++.+++|++.++.. +.+...|     
T Consensus        67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~--~l~~Ar~~l~~~g~~nV~~i~gD~~~~~  144 (322)
T PRK13943         67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK--ICEIAKRNVRRLGIENVIFVCGDGYYGV  144 (322)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHH--HHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence            3333444433334678999999999999998887542   6999999965  999999999988764 3333333     


Q ss_pred             ---CCCcEEEe
Q 031506          128 ---LPPSHICS  135 (158)
Q Consensus       128 ---~~fD~Ii~  135 (158)
                         .+||+|+.
T Consensus       145 ~~~~~fD~Ii~  155 (322)
T PRK13943        145 PEFAPYDVIFV  155 (322)
T ss_pred             cccCCccEEEE
Confidence               27999994

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.54  E-value=8.2e-07  Score=74.79  Aligned_cols=87  Identities=15%  Similarity=0.075  Sum_probs=64.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC----------CCCcEEE-e
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS----------LPPSHIC-S  135 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d----------~~fD~Ii-~  135 (158)
                      .+..+||+|||+|...+.+|+..  ..++++|+++.  ++..+.+++..+++. +++...|          ..+|.|+ .
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~--~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln  199 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTP--SIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH  199 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHH--HHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence            45689999999999999888874  58999999965  999999999888763 4444333          3789998 3


Q ss_pred             c-CCCCCccH-----HHHHHHHHHHhcCC
Q 031506          136 R-VLQDQSSL-----RLIIIEVGIILLSS  158 (158)
Q Consensus       136 d-~iy~~~~~-----~~ll~tl~~ll~~~  158 (158)
                      = .++....+     +.+++.+..+|.++
T Consensus       200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpG  228 (390)
T PRK14121        200 FPVPWDKKPHRRVISEDFLNEALRVLKPG  228 (390)
T ss_pred             CCCCccccchhhccHHHHHHHHHHHcCCC
Confidence            2 23333322     67888888887653

>PRK04457 spermidine synthase; Provisional

Probab=98.54  E-value=6e-07  Score=71.93  Aligned_cols=86  Identities=10%  Similarity=0.083  Sum_probs=62.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcC--CcceEEEcCC---------CCcEEEec
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRLLMTSL---------PPSHICSR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~~d~---------~fD~Ii~d  136 (158)
                      ++++|||||||+|.++..+++.  +.+|+++|+++.  +++.++++...++  -++++...|.         +||+|+.|
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~--vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQ--VIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHH--HHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            4578999999999999977665  358999999965  9999999987553  2345554442         79999976


Q ss_pred             CCCCCc-----cHHHHHHHHHHHhcC
Q 031506          137 VLQDQS-----SLRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~~-----~~~~ll~tl~~ll~~  157 (158)
                      ......     ...++++.+...|.+
T Consensus       144 ~~~~~~~~~~l~t~efl~~~~~~L~p  169 (262)
T PRK04457        144 GFDGEGIIDALCTQPFFDDCRNALSS  169 (262)
T ss_pred             CCCCCCCccccCcHHHHHHHHHhcCC
Confidence            432111     236778888777654

>PTZ00146 fibrillarin; Provisional

Probab=98.53  E-value=2.1e-06  Score=69.86  Aligned_cols=107  Identities=15%  Similarity=0.136  Sum_probs=66.3

Q ss_pred             CCceEecch-HHHHHHHHHhc---ccCCCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHH-Hc
Q 031506           46 EYGLFVWPC-SVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCE-MN  117 (158)
Q Consensus        46 ~~g~~vW~~-~~~la~~l~~~---~~~~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~-~n  117 (158)
                      ...+++|.. -=.||.-|+..   ....++.+|||||||+|..+..++..-   ..|+++|+++.  |++.+...++ ..
T Consensus       104 ~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r--~~~dLl~~ak~r~  181 (293)
T PTZ00146        104 KIEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHR--SGRDLTNMAKKRP  181 (293)
T ss_pred             cceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHH--HHHHHHHHhhhcC
Confidence            345899954 33455445442   223467899999999999999888763   38999999963  5543333222 12


Q ss_pred             CCcceEEEc-----------CCCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          118 KLNCRLLMT-----------SLPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       118 ~~~~~~~~~-----------d~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ++  .....           ...||+|++|.. .+.....++..+..+|++
T Consensus       182 NI--~~I~~Da~~p~~y~~~~~~vDvV~~Dva-~pdq~~il~~na~r~LKp  229 (293)
T PTZ00146        182 NI--VPIIEDARYPQKYRMLVPMVDVIFADVA-QPDQARIVALNAQYFLKN  229 (293)
T ss_pred             CC--EEEECCccChhhhhcccCCCCEEEEeCC-CcchHHHHHHHHHHhccC
Confidence            22  11111           126899998774 455555666677766654

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.53  E-value=1.3e-06  Score=74.61  Aligned_cols=69  Identities=16%  Similarity=0.106  Sum_probs=54.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------------CCCcE
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------------LPPSH  132 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------------~~fD~  132 (158)
                      .++.+|||+|||+|..++.+++. +  .+|+++|.++.  +++.+++|++.+++. +.+...|            ..||.
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~--rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~  328 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSAS--RLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR  328 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHH--HHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence            35789999999999999987765 2  48999999975  999999999998864 3443322            26999


Q ss_pred             EEecCCC
Q 031506          133 ICSRVLQ  139 (158)
Q Consensus       133 Ii~d~iy  139 (158)
                      |+.|+++
T Consensus       329 Vl~DaPC  335 (434)
T PRK14901        329 ILLDAPC  335 (434)
T ss_pred             EEEeCCC
Confidence            9977764

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.51  E-value=9.3e-07  Score=68.54  Aligned_cols=98  Identities=13%  Similarity=0.022  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--  127 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--  127 (158)
                      +..-..++.......+.++|||+|+++|..++.+|+.   +.+|+.+|.++  +..+.+++|++..++.  +++...|  
T Consensus        30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~--~~~~~A~~~~~~ag~~~~I~~~~gda~  107 (205)
T PF01596_consen   30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDP--ERAEIARENFRKAGLDDRIEVIEGDAL  107 (205)
T ss_dssp             HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSH--HHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred             CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcH--HHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence            3344444433223446789999999999999988864   56999999996  4899999999998875  3444332  


Q ss_pred             ------------CCCcEEEecCCCCCccHHHHHHHHHHHhc
Q 031506          128 ------------LPPSHICSRVLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       128 ------------~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~  156 (158)
                                  .+||+|+-|.  ....+...+..+..+|.
T Consensus       108 ~~l~~l~~~~~~~~fD~VFiDa--~K~~y~~y~~~~~~ll~  146 (205)
T PF01596_consen  108 EVLPELANDGEEGQFDFVFIDA--DKRNYLEYFEKALPLLR  146 (205)
T ss_dssp             HHHHHHHHTTTTTSEEEEEEES--TGGGHHHHHHHHHHHEE
T ss_pred             hhHHHHHhccCCCceeEEEEcc--cccchhhHHHHHhhhcc
Confidence                        2699999333  23444444444444443

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN03075 nicotianamine synthase; Provisional

Probab=98.49  E-value=1.5e-06  Score=70.73  Aligned_cols=87  Identities=15%  Similarity=0.100  Sum_probs=62.8

Q ss_pred             CCCeEEEeccC-CCHHHHHHh-hc--CCEEEEEecCChHHHHHHHHHHHHH-cCCc--ceEEEcC--------CCCcEEE
Q 031506           70 SGANVVELGAG-TSLPGLVAA-KV--GSNVTLTDDSNRIEVLKNMRRVCEM-NKLN--CRLLMTS--------LPPSHIC  134 (158)
Q Consensus        70 ~~~~vLELG~G-tGl~~i~~a-~~--g~~v~~tD~~~~~~~l~~~~~n~~~-n~~~--~~~~~~d--------~~fD~Ii  134 (158)
                      .+++|+|+||| .|+.++.++ +.  +.+++++|.++.  +++.+++++.. .++.  +++...|        .+||+|+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~--ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPS--ANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence            67899999999 556666555 33  347999999965  99999999964 4443  3333322        3899999


Q ss_pred             ecCC-CC-CccHHHHHHHHHHHhcCC
Q 031506          135 SRVL-QD-QSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       135 ~d~i-y~-~~~~~~ll~tl~~ll~~~  158 (158)
                      ++++ |. .+....+++.+...|.++
T Consensus       201 ~~ALi~~dk~~k~~vL~~l~~~LkPG  226 (296)
T PLN03075        201 LAALVGMDKEEKVKVIEHLGKHMAPG  226 (296)
T ss_pred             EecccccccccHHHHHHHHHHhcCCC
Confidence            4465 44 378899999998887653

>PRK00811 spermidine synthase; Provisional

Probab=98.49  E-value=1.3e-06  Score=70.73  Aligned_cols=86  Identities=14%  Similarity=0.054  Sum_probs=58.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHHHHc------CCcceEEEcC---------CCCcE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMN------KLNCRLLMTS---------LPPSH  132 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~-g-~~v~~tD~~~~~~~l~~~~~n~~~n------~~~~~~~~~d---------~~fD~  132 (158)
                      ++++||++|||+|.++..+.+. + .+|+++|+++.  +++.+++++...      .-++++...|         .+||+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~--vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  153 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER--VVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV  153 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH--HHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence            4679999999999999977776 4 38999999975  999999987632      2234444333         37999


Q ss_pred             EEecC--CCCCc---cHHHHHHHHHHHhcC
Q 031506          133 ICSRV--LQDQS---SLRLIIIEVGIILLS  157 (158)
Q Consensus       133 Ii~d~--iy~~~---~~~~ll~tl~~ll~~  157 (158)
                      |++|.  .+...   ...++++.++..|..
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~  183 (283)
T PRK00811        154 IIVDSTDPVGPAEGLFTKEFYENCKRALKE  183 (283)
T ss_pred             EEECCCCCCCchhhhhHHHHHHHHHHhcCC
Confidence            99553  22221   125566666666543

>PLN02476 O-methyltransferase

Probab=98.47  E-value=2e-06  Score=69.55  Aligned_cols=85  Identities=11%  Similarity=0.080  Sum_probs=62.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc--------------CCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT--------------SLP  129 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~--------------d~~  129 (158)
                      .+.++|||+|+|+|..++.+++.   +.+|+.+|.++.  .++.+++|++.+++.  +++...              +.+
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e--~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~  194 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSN--SLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS  194 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence            36789999999999999988763   347999999964  899999999999875  333322              137


Q ss_pred             CcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          130 PSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       130 fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ||+|+.|.-  ...+...+..+..+|.+
T Consensus       195 FD~VFIDa~--K~~Y~~y~e~~l~lL~~  220 (278)
T PLN02476        195 YDFAFVDAD--KRMYQDYFELLLQLVRV  220 (278)
T ss_pred             CCEEEECCC--HHHHHHHHHHHHHhcCC
Confidence            999995543  34555556555555543

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.43  E-value=8.8e-07  Score=68.45  Aligned_cols=77  Identities=17%  Similarity=0.135  Sum_probs=53.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHhh--cCCEEEEEecCChHHHHHHHHHHHHHcCCcceE--EEcC-------CCCcEEEecC
Q 031506           69 FSGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LMTS-------LPPSHICSRV  137 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~--~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~~d-------~~fD~Ii~d~  137 (158)
                      .++..|+|+.||.|.+++.+|+  .++.|++.|+++.  +++.+++|+++|++...+  ...|       ..||-|+++.
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~--a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l  177 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPD--AVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL  177 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HH--HHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHH--HHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence            3678999999999999999998  6679999999964  999999999999987544  3333       3789999544


Q ss_pred             C-CCCccHHHH
Q 031506          138 L-QDQSSLRLI  147 (158)
Q Consensus       138 i-y~~~~~~~l  147 (158)
                      + .-.+-++..
T Consensus       178 p~~~~~fl~~~  188 (200)
T PF02475_consen  178 PESSLEFLDAA  188 (200)
T ss_dssp             TSSGGGGHHHH
T ss_pred             hHHHHHHHHHH
Confidence            4 434444443

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.40  E-value=2.5e-07  Score=72.90  Aligned_cols=82  Identities=17%  Similarity=0.056  Sum_probs=62.5

Q ss_pred             eEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC--Cc--------ceEEEcCCCCcEEE-ecCCCCC
Q 031506           73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK--LN--------CRLLMTSLPPSHIC-SRVLQDQ  141 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~--~~--------~~~~~~d~~fD~Ii-~d~iy~~  141 (158)
                      .++|+|||+|..++.++....+|++||.++.  ||+.+++.-...-  ..        +...+.+.+.|+|+ +-|+++.
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~--mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF  113 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEA--MLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF  113 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhhhheeecCCHH--HHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence            7999999999999999999889999999975  9997776332211  11        12233355899999 9999887


Q ss_pred             ccHHHHHHHHHHHhcC
Q 031506          142 SSLRLIIIEVGIILLS  157 (158)
Q Consensus       142 ~~~~~ll~tl~~ll~~  157 (158)
                      .. +.+.+.++.+|.+
T Consensus       114 dl-e~fy~~~~rvLRk  128 (261)
T KOG3010|consen  114 DL-ERFYKEAYRVLRK  128 (261)
T ss_pred             ch-HHHHHHHHHHcCC
Confidence            65 7788888888764

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.40  E-value=1.3e-06  Score=65.46  Aligned_cols=67  Identities=10%  Similarity=0.002  Sum_probs=48.1

Q ss_pred             eEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcce--EEEcCC-------C----CcEEEecCCC
Q 031506           73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--LLMTSL-------P----PSHICSRVLQ  139 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~--~~~~d~-------~----fD~Ii~d~iy  139 (158)
                      .|+|+.||.|.-++.+|+.+.+|+++|+++.  .++.+++|++..++..+  +...|+       +    ||+|+.+|++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~--~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW   79 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPE--RLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW   79 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HH--HHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence            6999999999999999999999999999964  89999999999987544  444443       3    8999966654


Q ss_pred             CC
Q 031506          140 DQ  141 (158)
Q Consensus       140 ~~  141 (158)
                      --
T Consensus        80 GG   81 (163)
T PF09445_consen   80 GG   81 (163)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.39  E-value=3.2e-06  Score=66.46  Aligned_cols=109  Identities=7%  Similarity=-0.074  Sum_probs=72.5

Q ss_pred             CCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH----------
Q 031506           46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE----------  115 (158)
Q Consensus        46 ~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~----------  115 (158)
                      .+|++.=.....|.+|+..... -++.+||..|||.|.-.+.+|.+|.+|+++|+++.  +++.+.+...          
T Consensus        20 ~~~f~~~~pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~--Ai~~~~~e~~~~~~~~~~~~   96 (226)
T PRK13256         20 DVGFCQESPNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEK--AVLSFFSQNTINYEVIHGND   96 (226)
T ss_pred             CCCCccCCCCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHH--HHHHHHHHcCCCcceecccc
Confidence            3444333445666676655332 25679999999999999999999999999999975  7876544211          


Q ss_pred             ---HcCCcceEEEcCC-----------CCcEEE-ecC--CCCCccHHHHHHHHHHHhcC
Q 031506          116 ---MNKLNCRLLMTSL-----------PPSHIC-SRV--LQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       116 ---~n~~~~~~~~~d~-----------~fD~Ii-~d~--iy~~~~~~~ll~tl~~ll~~  157 (158)
                         ..+..++++..|.           +||+|+ .-+  -..++....-++.+..+|.+
T Consensus        97 ~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p  155 (226)
T PRK13256         97 YKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN  155 (226)
T ss_pred             cceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC
Confidence               0122344443322           589988 433  34566677788888887765

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.38  E-value=2.4e-06  Score=66.80  Aligned_cols=80  Identities=11%  Similarity=0.086  Sum_probs=63.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCcceE--EE-cC----------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LM-TS----------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~-~d----------~~fD~I  133 (158)
                      ..++|||+|.+.|..++.+|.. .  .+++.+|.++.  +.+.+++|++..++..++  .. .|          .+||+|
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e--~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEE--RAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHH--HHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            6789999999999999976653 2  38999999964  999999999999886542  23 22          389999


Q ss_pred             E--ecCCCCCccHHHHHHHH
Q 031506          134 C--SRVLQDQSSLRLIIIEV  151 (158)
Q Consensus       134 i--~d~iy~~~~~~~ll~tl  151 (158)
                      +  +|--.|+..++..++.+
T Consensus       137 FIDadK~~yp~~le~~~~lL  156 (219)
T COG4122         137 FIDADKADYPEYLERALPLL  156 (219)
T ss_pred             EEeCChhhCHHHHHHHHHHh
Confidence            9  88888888777766654

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.38  E-value=1.1e-06  Score=66.59  Aligned_cols=84  Identities=13%  Similarity=0.070  Sum_probs=57.2

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC--E---------EEEEecCChHHHHHHHHHHHHHcCCc--ceE
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--N---------VTLTDDSNRIEVLKNMRRVCEMNKLN--CRL  123 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~--~---------v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~  123 (158)
                      .+|.-|.......++..+||--||+|.+-+.++..+.  .         +++.|+++.  +++.+++|++..++.  +.+
T Consensus        15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~--~v~~a~~N~~~ag~~~~i~~   92 (179)
T PF01170_consen   15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPK--AVRGARENLKAAGVEDYIDF   92 (179)
T ss_dssp             HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHH--HHHHHHHHHHHTT-CGGEEE
T ss_pred             HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHH--HHHHHHHHHHhcccCCceEE
Confidence            4555555544444677999999999999998777654  3         779999965  999999999988765  334


Q ss_pred             EEcC--------CCCcEEEecCCCCCc
Q 031506          124 LMTS--------LPPSHICSRVLQDQS  142 (158)
Q Consensus       124 ~~~d--------~~fD~Ii~d~iy~~~  142 (158)
                      ..+|        ..+|+|++||+|-..
T Consensus        93 ~~~D~~~l~~~~~~~d~IvtnPPyG~r  119 (179)
T PF01170_consen   93 IQWDARELPLPDGSVDAIVTNPPYGRR  119 (179)
T ss_dssp             EE--GGGGGGTTSBSCEEEEE--STTS
T ss_pred             EecchhhcccccCCCCEEEECcchhhh
Confidence            4433        268999999999863

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.37  E-value=1.4e-06  Score=66.67  Aligned_cols=76  Identities=12%  Similarity=0.040  Sum_probs=55.7

Q ss_pred             CCCeEEEeccCCCHHHHHHhh-cCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc----------CCCCcEEE-ecC
Q 031506           70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT----------SLPPSHIC-SRV  137 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~----------d~~fD~Ii-~d~  137 (158)
                      ++.||||||||.|.+-..+.. ++.+..++|+++.  .+..+    -.++++  +.+.          |..||+|| +..
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~--~v~~c----v~rGv~--Viq~Dld~gL~~f~d~sFD~VIlsqt   84 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPD--NVAAC----VARGVS--VIQGDLDEGLADFPDQSFDYVILSQT   84 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHH--HHHHH----HHcCCC--EEECCHHHhHhhCCCCCccEEehHhH
Confidence            467999999999987765554 6779999999964  33322    224443  3333          34899999 999


Q ss_pred             CCCCccHHHHHHHHHH
Q 031506          138 LQDQSSLRLIIIEVGI  153 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~  153 (158)
                      +......+.+++.+..
T Consensus        85 LQ~~~~P~~vL~EmlR  100 (193)
T PF07021_consen   85 LQAVRRPDEVLEEMLR  100 (193)
T ss_pred             HHhHhHHHHHHHHHHH
Confidence            9999998888887754

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.36  E-value=3.4e-06  Score=69.85  Aligned_cols=100  Identities=17%  Similarity=0.082  Sum_probs=78.7

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcce--EEEcC-----C
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--LLMTS-----L  128 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~--~~~~d-----~  128 (158)
                      ..+|..+.+-..-.+|..|||=-||||.+-+.+...|++++++|++..  |+.-++.|++..++...  ...+|     .
T Consensus       183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~--mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl  260 (347)
T COG1041         183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDER--MVRGAKINLEYYGIEDYPVLKVLDATNLPL  260 (347)
T ss_pred             HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHH--HHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence            356666666555567889999999999999999999999999999976  99999999998875421  12212     2


Q ss_pred             ---CCcEEEecCCCCCcc----------HHHHHHHHHHHhcC
Q 031506          129 ---PPSHICSRVLQDQSS----------LRLIIIEVGIILLS  157 (158)
Q Consensus       129 ---~fD~Ii~d~iy~~~~----------~~~ll~tl~~ll~~  157 (158)
                         .+|.|+.||+|-...          +...+++++..|.+
T Consensus       261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~  302 (347)
T COG1041         261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKP  302 (347)
T ss_pred             CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhc
Confidence               499999999998766          67777777777654

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.36  E-value=3.3e-06  Score=67.68  Aligned_cols=59  Identities=12%  Similarity=0.118  Sum_probs=42.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc-----CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCcEEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPSHIC  134 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~-----g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD~Ii  134 (158)
                      ...+|||+|||+|..+..+++.     +..|+++|+++.  |++.++++..  +  +.+...        +..||+|+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~--~l~~A~~~~~--~--~~~~~~d~~~lp~~~~sfD~I~  156 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKV--AIKYAAKRYP--Q--VTFCVASSHRLPFADQSLDAII  156 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHH--HHHHHHHhCC--C--CeEEEeecccCCCcCCceeEEE
Confidence            4568999999999999877654     237999999965  9988876532  1  222221        23799999

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=3.7e-06  Score=67.27  Aligned_cols=82  Identities=16%  Similarity=0.173  Sum_probs=61.6

Q ss_pred             HHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-----CC----C
Q 031506           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-----SL----P  129 (158)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-----d~----~  129 (158)
                      .+.+.......++.+|||+|+|.|.++..+++++..|+++++++.  +++.+++... ...+..+...     |.    .
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~--l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~~   95 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRR--LAEVLKERFA-PYDNLTVINGDALKFDFPSLAQ   95 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHH--HHHHHHHhcc-cccceEEEeCchhcCcchhhcC
Confidence            555655444445789999999999999999999999999999976  8888887765 1122333333     22    4


Q ss_pred             CcEEEecCCCCCcc
Q 031506          130 PSHICSRVLQDQSS  143 (158)
Q Consensus       130 fD~Ii~d~iy~~~~  143 (158)
                      ++.|+++.+|+..+
T Consensus        96 ~~~vVaNlPY~Iss  109 (259)
T COG0030          96 PYKVVANLPYNISS  109 (259)
T ss_pred             CCEEEEcCCCcccH
Confidence            67888999999876

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.33  E-value=4.4e-06  Score=71.76  Aligned_cols=83  Identities=14%  Similarity=0.203  Sum_probs=55.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC------CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG------SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHIC  134 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g------~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii  134 (158)
                      +++.|+++|||+|.++..+++.+      .+|+|++-++.  ++..+++.++.|+..  +++...|+       +.|+||
T Consensus       186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~--A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV  263 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN--AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV  263 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH--HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred             cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh--HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence            46789999999999998877765      39999999975  676777777788764  55555543       899999


Q ss_pred             ecCCC---CCccHHHHHHHHHHH
Q 031506          135 SRVLQ---DQSSLRLIIIEVGII  154 (158)
Q Consensus       135 ~d~iy---~~~~~~~ll~tl~~l  154 (158)
                      |+.+-   ..+..++.+......
T Consensus       264 SElLGsfg~nEl~pE~Lda~~rf  286 (448)
T PF05185_consen  264 SELLGSFGDNELSPECLDAADRF  286 (448)
T ss_dssp             E---BTTBTTTSHHHHHHHGGGG
T ss_pred             EeccCCccccccCHHHHHHHHhh
Confidence            77763   344555555544433

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.32  E-value=1.3e-06  Score=71.14  Aligned_cols=74  Identities=20%  Similarity=0.188  Sum_probs=43.7

Q ss_pred             CCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHHHHHHHc-CCcceE--EEc-------------CCCCcE
Q 031506           71 GANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRL--LMT-------------SLPPSH  132 (158)
Q Consensus        71 ~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~n~~~n-~~~~~~--~~~-------------d~~fD~  132 (158)
                      ..++||+|+| +.+..++.++ .|.++++||+++.  .++.+++|++.| ++.-++  ...             +..||+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~--sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df  180 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPK--SLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF  180 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HH--HHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHH--HHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence            4689999999 5576776555 5779999999975  999999999999 776333  211             127999


Q ss_pred             EEecCCCCCccHHH
Q 031506          133 ICSRVLQDQSSLRL  146 (158)
Q Consensus       133 Ii~d~iy~~~~~~~  146 (158)
                      .+|+|+||.+.-+.
T Consensus       181 tmCNPPFy~s~~e~  194 (299)
T PF05971_consen  181 TMCNPPFYSSQEEA  194 (299)
T ss_dssp             EEE-----SS----
T ss_pred             EecCCccccChhhh
Confidence            99888887766443

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR00417 speE spermidine synthase

Probab=98.30  E-value=8.4e-06  Score=65.42  Aligned_cols=86  Identities=13%  Similarity=0.025  Sum_probs=59.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcC-----CcceEEEcC---------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK-----LNCRLLMTS---------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~-----~~~~~~~~d---------~~fD~I  133 (158)
                      ++++||++|||+|.++..+++..  .+++++|+++.  +++.++++....+     .++++...|         .+||+|
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~--vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI  149 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEK--VIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI  149 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHH--HHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence            45699999999999888776664  48999999965  8999998875421     223443333         389999


Q ss_pred             EecCCCCC---cc--HHHHHHHHHHHhcC
Q 031506          134 CSRVLQDQ---SS--LRLIIIEVGIILLS  157 (158)
Q Consensus       134 i~d~iy~~---~~--~~~ll~tl~~ll~~  157 (158)
                      ++|+....   ..  ..++++.++.+|.+
T Consensus       150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~p  178 (270)
T TIGR00417       150 IVDSTDPVGPAETLFTKEFYELLKKALNE  178 (270)
T ss_pred             EEeCCCCCCcccchhHHHHHHHHHHHhCC
Confidence            96664222   11  35666777766654

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=2.1e-06  Score=73.96  Aligned_cols=111  Identities=11%  Similarity=0.104  Sum_probs=79.6

Q ss_pred             eEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHH
Q 031506           35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC  114 (158)
Q Consensus        35 ~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~  114 (158)
                      ++++|..+....+..   ..+.+|-.++..+...-.++.++|+.||||++|+.+|+...+|+++++++.  +++-+++|+
T Consensus       351 ltF~iSp~AFFQ~Nt---~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~--aV~dA~~nA  425 (534)
T KOG2187|consen  351 LTFRISPGAFFQTNT---SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPD--AVEDAEKNA  425 (534)
T ss_pred             eEEEECCchhhccCc---HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChh--hcchhhhcc
Confidence            445554433333333   478888888888776667789999999999999999999889999999976  999999999


Q ss_pred             HHcCCc-ceEEEc---CC----------CCcEEE-ecCCCCCccHHHHHHHH
Q 031506          115 EMNKLN-CRLLMT---SL----------PPSHIC-SRVLQDQSSLRLIIIEV  151 (158)
Q Consensus       115 ~~n~~~-~~~~~~---d~----------~fD~Ii-~d~iy~~~~~~~ll~tl  151 (158)
                      +.|++. +++...   |.          .-+++. .||.- ...+..+++.+
T Consensus       426 ~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l  476 (534)
T KOG2187|consen  426 QINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKAL  476 (534)
T ss_pred             hhcCccceeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHH
Confidence            999985 444433   11          335555 88875 33344444433

>PRK03612 spermidine synthase; Provisional

Probab=98.24  E-value=5.9e-06  Score=72.18  Aligned_cols=86  Identities=16%  Similarity=0.038  Sum_probs=59.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHH---c-----CCcceEEEcC---------CCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM---N-----KLNCRLLMTS---------LPP  130 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~---n-----~~~~~~~~~d---------~~f  130 (158)
                      ++++||++|||+|..+..+.+..  .+|+++|+++.  +++.+++|...   |     .-++++...|         .+|
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~--vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPA--MTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHH--HHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            56799999999999999877765  49999999975  99999986422   1     1223444333         289


Q ss_pred             cEEEecCCCCCc------cHHHHHHHHHHHhcC
Q 031506          131 SHICSRVLQDQS------SLRLIIIEVGIILLS  157 (158)
Q Consensus       131 D~Ii~d~iy~~~------~~~~ll~tl~~ll~~  157 (158)
                      |+|++|+.....      ..+++++.++..|..
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p  407 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP  407 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC
Confidence            999977654321      123566666666654

>PRK01581 speE spermidine synthase; Validated

Probab=98.24  E-value=5.7e-06  Score=69.21  Aligned_cols=86  Identities=17%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHH---Hc-----CCcceEEEcC---------CCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE---MN-----KLNCRLLMTS---------LPP  130 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~---~n-----~~~~~~~~~d---------~~f  130 (158)
                      ..++||++|||+|.....+.+..  .+|+++|+++.  +++.+++.-.   .+     .-++++...|         .+|
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpe--VIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGS--MINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            56799999999999888777765  49999999965  9999886211   11     2234444333         279


Q ss_pred             cEEEecCCCCCc------cHHHHHHHHHHHhcC
Q 031506          131 SHICSRVLQDQS------SLRLIIIEVGIILLS  157 (158)
Q Consensus       131 D~Ii~d~iy~~~------~~~~ll~tl~~ll~~  157 (158)
                      |+|+.|+.-...      ...++++.++..|.+
T Consensus       228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP  260 (374)
T PRK01581        228 DVIIIDFPDPATELLSTLYTSELFARIATFLTE  260 (374)
T ss_pred             cEEEEcCCCccccchhhhhHHHHHHHHHHhcCC
Confidence            999977542211      124566666666654

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.23  E-value=3.6e-06  Score=65.27  Aligned_cols=84  Identities=18%  Similarity=0.141  Sum_probs=65.9

Q ss_pred             eEEEeccCCCHHHHHHh-hcCCEEEEEecCChHHHHHHHHHHHHHcCC-cce-EEEc---------CCCCcEEE-ecCCC
Q 031506           73 NVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCR-LLMT---------SLPPSHIC-SRVLQ  139 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~-~~~~---------d~~fD~Ii-~d~iy  139 (158)
                      .|||+|||||.---..- +.+..|+++|-++.  |-+.+.+.+..+.- ++. +...         |.++|.|+ .-++.
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~--mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC  156 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEK--MEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC  156 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHH--HHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence            57999999997654332 35679999999976  88888888887742 222 2222         44899999 99999


Q ss_pred             CCccHHHHHHHHHHHhcCC
Q 031506          140 DQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll~~~  158 (158)
                      ..++....|+.+..+|.++
T Consensus       157 Sve~~~k~L~e~~rlLRpg  175 (252)
T KOG4300|consen  157 SVEDPVKQLNEVRRLLRPG  175 (252)
T ss_pred             ccCCHHHHHHHHHHhcCCC
Confidence            9999999999999999764

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.23  E-value=1.9e-05  Score=61.23  Aligned_cols=34  Identities=26%  Similarity=0.116  Sum_probs=28.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN  102 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~  102 (158)
                      .++.+|||||||||..+..+++..   ..|+++|+++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~   86 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP   86 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence            467799999999999999777753   4899999986

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.23  E-value=1.8e-05  Score=59.95  Aligned_cols=47  Identities=21%  Similarity=0.107  Sum_probs=35.2

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCCh
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR  103 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~  103 (158)
                      .+.+...+.....++.+|||+|||+|.++..++++.   .+|+++|+++.
T Consensus        19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~   68 (188)
T TIGR00438        19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM   68 (188)
T ss_pred             HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence            344444444445578899999999999999777653   37999999973

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.20  E-value=4.3e-06  Score=65.37  Aligned_cols=102  Identities=15%  Similarity=0.039  Sum_probs=70.7

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHH-HHHHHcC------C------
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR-RVCEMNK------L------  119 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~-~n~~~n~------~------  119 (158)
                      .....|.+|+.. .....+.+||..|||.|.-.+.+|.+|.+|+++|+++.  +++.+. +|.....      .      
T Consensus        21 ~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~--Ai~~~~~e~~~~~~~~~~~~~~~~~~~   97 (218)
T PF05724_consen   21 EPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPT--AIEQAFEENNLEPTVTSVGGFKRYQAG   97 (218)
T ss_dssp             TSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HH--HHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred             CCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHH--HHHHHHHHhccCCCcccccceeeecCC
Confidence            446778888776 23345669999999999999999999999999999975  787663 2221111      0      


Q ss_pred             cceEEEcCC---------CCcEEE---ecCCCCCccHHHHHHHHHHHhcC
Q 031506          120 NCRLLMTSL---------PPSHIC---SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       120 ~~~~~~~d~---------~fD~Ii---~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .+.++..|.         +||+|+   +-|--.++..+.-.+.+..||.+
T Consensus        98 ~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p  147 (218)
T PF05724_consen   98 RITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP  147 (218)
T ss_dssp             SEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE
T ss_pred             ceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC
Confidence            123444443         699999   44445677888888888888765

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.19  E-value=1.8e-05  Score=71.38  Aligned_cols=86  Identities=15%  Similarity=0.107  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhcccC-CCCCeEEEeccCCCHHHHHHhhc------------------------------------------
Q 031506           55 SVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKV------------------------------------------   91 (158)
Q Consensus        55 ~~~la~~l~~~~~~-~~~~~vLELG~GtGl~~i~~a~~------------------------------------------   91 (158)
                      ...||.-|...... ..+..++|-+||+|.+.|.+|..                                          
T Consensus       174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~  253 (702)
T PRK11783        174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA  253 (702)
T ss_pred             cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            45677766654332 35679999999999999977652                                          


Q ss_pred             --CCEEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcCC----------CCcEEEecCCCCCc
Q 031506           92 --GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTSL----------PPSHICSRVLQDQS  142 (158)
Q Consensus        92 --g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d~----------~fD~Ii~d~iy~~~  142 (158)
                        ..+++++|+++.  +++.+++|+..+++..  .+...|.          .||+|++||+|...
T Consensus       254 ~~~~~i~G~Did~~--av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r  316 (702)
T PRK11783        254 ELPSKFYGSDIDPR--VIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER  316 (702)
T ss_pred             ccCceEEEEECCHH--HHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCc
Confidence              126999999965  9999999999998853  3433332          49999999999643

>PRK10742 putative methyltransferase; Provisional

Probab=98.18  E-value=1.1e-05  Score=64.21  Aligned_cols=72  Identities=19%  Similarity=0.197  Sum_probs=56.9

Q ss_pred             eEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc------C--C--cceEEEcC---------CCCcEE
Q 031506           73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN------K--L--NCRLLMTS---------LPPSHI  133 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n------~--~--~~~~~~~d---------~~fD~I  133 (158)
                      +|||+=||+|..|+.++.+|++|+++|.++.  +...++.|++..      +  +  +..+...|         ..||+|
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~--vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV  168 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCRVRMLERNPV--VAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence            8999999999999999999999999999975  778888888863      1  1  12233222         179999


Q ss_pred             EecCCCCCccHHH
Q 031506          134 CSRVLQDQSSLRL  146 (158)
Q Consensus       134 i~d~iy~~~~~~~  146 (158)
                      +.||+|....-.+
T Consensus       169 YlDPMfp~~~ksa  181 (250)
T PRK10742        169 YLDPMFPHKQKSA  181 (250)
T ss_pred             EECCCCCCCcccc
Confidence            9999999876444

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.17  E-value=1e-05  Score=67.07  Aligned_cols=80  Identities=19%  Similarity=0.228  Sum_probs=62.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceE--EEcCC--------CCcEEE-ecC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LMTSL--------PPSHIC-SRV  137 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~~d~--------~fD~Ii-~d~  137 (158)
                      .|.+|+|+-||.|-+++.+|+.|+ .|+++|+++.  +++.+++|+++|++...+  ...|.        .+|-|+ .-|
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~--A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p  265 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPD--AVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP  265 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCceEEEEecCHH--HHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence            588999999999999999999998 4999999965  999999999999987654  33332        599999 545


Q ss_pred             CCCCccHHHHHHHH
Q 031506          138 LQDQSSLRLIIIEV  151 (158)
Q Consensus       138 iy~~~~~~~ll~tl  151 (158)
                      .......+..++.+
T Consensus       266 ~~a~~fl~~A~~~~  279 (341)
T COG2520         266 KSAHEFLPLALELL  279 (341)
T ss_pred             CcchhhHHHHHHHh
Confidence            44455555554443

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=1.9e-05  Score=62.76  Aligned_cols=83  Identities=19%  Similarity=0.169  Sum_probs=59.8

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhh-cCC--EEEEEecCChHHHHHHHHHHHHHcCCcceEE--EcCC-------CCcEEEe
Q 031506           68 RFSGANVVELGAGTSLPGLVAAK-VGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL--MTSL-------PPSHICS  135 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~-~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~--~~d~-------~fD~Ii~  135 (158)
                      ..++.+|||.|.|+|.++..++. .|.  +|+..|+.+.  .++.+++|++..++..+++  ..|.       .||.|+.
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d--~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~L  169 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRED--FAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFL  169 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHH--HHHHHHHHHHHhccccceEEEeccccccccccccCEEEE
Confidence            45789999999999999998886 343  8999999975  9999999999876544332  2222       8999997


Q ss_pred             cCCCCCccHHHHHHHHHHHhc
Q 031506          136 RVLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~  156 (158)
                      |.+-.    ...+..++.+|+
T Consensus       170 Dmp~P----W~~le~~~~~Lk  186 (256)
T COG2519         170 DLPDP----WNVLEHVSDALK  186 (256)
T ss_pred             cCCCh----HHHHHHHHHHhC
Confidence            76533    333444444443

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.10  E-value=2.7e-05  Score=62.62  Aligned_cols=95  Identities=17%  Similarity=0.198  Sum_probs=69.9

Q ss_pred             CCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceE
Q 031506           46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRL  123 (158)
Q Consensus        46 ~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~  123 (158)
                      +.|-++-..+.++..-+... ...++..|||+|-|||.++..+...|++|+|++.++.  |+..+++..+--...  .++
T Consensus        35 d~GQHilkNp~v~~~I~~ka-~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dpr--mvael~krv~gtp~~~kLqV  111 (315)
T KOG0820|consen   35 DFGQHILKNPLVIDQIVEKA-DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPR--MVAELEKRVQGTPKSGKLQV  111 (315)
T ss_pred             ccchhhhcCHHHHHHHHhcc-CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcH--HHHHHHHHhcCCCccceeeE
Confidence            35555555666666655443 3346678999999999999999999999999999986  888888777644322  233


Q ss_pred             E-----EcCC-CCcEEEecCCCCCcc
Q 031506          124 L-----MTSL-PPSHICSRVLQDQSS  143 (158)
Q Consensus       124 ~-----~~d~-~fD~Ii~d~iy~~~~  143 (158)
                      .     ..|+ .||.+|++.+|..++
T Consensus       112 ~~gD~lK~d~P~fd~cVsNlPyqISS  137 (315)
T KOG0820|consen  112 LHGDFLKTDLPRFDGCVSNLPYQISS  137 (315)
T ss_pred             EecccccCCCcccceeeccCCccccC
Confidence            3     3354 789999999998876

>PLN02366 spermidine synthase

Probab=98.08  E-value=4.3e-05  Score=62.71  Aligned_cols=85  Identities=11%  Similarity=0.020  Sum_probs=57.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHc-----CCcceEEEcC----------CCCcE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRLLMTS----------LPPSH  132 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~~d----------~~fD~  132 (158)
                      +.++||++|||.|.+...+++..  .+|+++|+++.  +++.+++.....     .-++++...|          .+||+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~--Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKM--VIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHH--HHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            46899999999999998888764  38999999964  999999877531     2234444333          27999


Q ss_pred             EEecCCCC--Cc---cHHHHHHHHHHHhc
Q 031506          133 ICSRVLQD--QS---SLRLIIIEVGIILL  156 (158)
Q Consensus       133 Ii~d~iy~--~~---~~~~ll~tl~~ll~  156 (158)
                      |+.|..-.  ..   ...++++.++..|.
T Consensus       169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~  197 (308)
T PLN02366        169 IIVDSSDPVGPAQELFEKPFFESVARALR  197 (308)
T ss_pred             EEEcCCCCCCchhhhhHHHHHHHHHHhcC
Confidence            99554321  11   12455666665554

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.07  E-value=1.5e-05  Score=63.48  Aligned_cols=77  Identities=12%  Similarity=0.012  Sum_probs=56.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcceE--EEc---------------CC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LMT---------------SL  128 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~~---------------d~  128 (158)
                      .+.++|||+|+++|..++.+|+.   +.+|+.+|.++.  ..+.+++|++..++..++  ...               ..
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~--~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~  155 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRE--NYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG  155 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHH--HHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence            46779999999999999977753   459999999964  889999999988865332  221               13


Q ss_pred             CCcEEE--ecCCCCCccHHHH
Q 031506          129 PPSHIC--SRVLQDQSSLRLI  147 (158)
Q Consensus       129 ~fD~Ii--~d~iy~~~~~~~l  147 (158)
                      +||+|+  +|--.|...++.+
T Consensus       156 ~fD~iFiDadK~~Y~~y~~~~  176 (247)
T PLN02589        156 TFDFIFVDADKDNYINYHKRL  176 (247)
T ss_pred             cccEEEecCCHHHhHHHHHHH
Confidence            799999  6644444444433

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=98.06  E-value=6.4e-06  Score=66.03  Aligned_cols=110  Identities=22%  Similarity=0.229  Sum_probs=75.9

Q ss_pred             CCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc---CCcc
Q 031506           45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN---KLNC  121 (158)
Q Consensus        45 ~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n---~~~~  121 (158)
                      ..+|..+|+++..|.+++.+.+....+.++.++|||.++..+.+++...-|...+-...  +.-+...+...+   ....
T Consensus        65 ~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~  142 (262)
T KOG2497|consen   65 ARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRC--AGLLLEEIILLSRDLSLEV  142 (262)
T ss_pred             HHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhcccceecCCccCc--HHHHHHHHHhccccccccc
Confidence            36899999999999999999887778899999999999999777776544444444332  222222222222   1111


Q ss_pred             eE-----------EEc---CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          122 RL-----------LMT---SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       122 ~~-----------~~~---d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +.           ...   ...+|+|+ +|++|. ....+++.++..+|+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~  192 (262)
T KOG2497|consen  143 RDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLR  192 (262)
T ss_pred             cccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHHh
Confidence            10           000   11589999 999999 8888889888887753

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.04  E-value=1e-05  Score=64.65  Aligned_cols=82  Identities=16%  Similarity=0.103  Sum_probs=63.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcc----eEEEcCCCCcEEE-ecCCCCCccH
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC----RLLMTSLPPSHIC-SRVLQDQSSL  144 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~----~~~~~d~~fD~Ii-~d~iy~~~~~  144 (158)
                      +..++||||||.|-++..++....+|++|+.|..  |...++    ..+..+    .....+.+||+|. .+++=.....
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~--Mr~rL~----~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P  167 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPP--MRWRLS----KKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP  167 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHH--HHHHHH----hCCCeEEehhhhhccCCceEEEeehhhhhccCCH
Confidence            5568999999999999999999899999999964  654433    333321    1111234899999 9999999999


Q ss_pred             HHHHHHHHHHhcC
Q 031506          145 RLIIIEVGIILLS  157 (158)
Q Consensus       145 ~~ll~tl~~ll~~  157 (158)
                      -.|++.++.-|.+
T Consensus       168 ~~LL~~i~~~l~p  180 (265)
T PF05219_consen  168 LTLLRDIRRALKP  180 (265)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999887654

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.03  E-value=8.8e-06  Score=63.73  Aligned_cols=41  Identities=22%  Similarity=0.346  Sum_probs=37.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~  112 (158)
                      ...-|||+|||||+.|-.+...|...+++|+|+.  |++.+.+
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSps--ML~~a~~   90 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPS--MLEQAVE   90 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHH--HHHHHHH
Confidence            5668999999999999999999999999999975  9998775

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.03  E-value=5.4e-05  Score=60.49  Aligned_cols=105  Identities=12%  Similarity=0.072  Sum_probs=75.5

Q ss_pred             CCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--------CCEEEEEecCChHHHHHHHHHHHHHc
Q 031506           46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------GSNVTLTDDSNRIEVLKNMRRVCEMN  117 (158)
Q Consensus        46 ~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--------g~~v~~tD~~~~~~~l~~~~~n~~~n  117 (158)
                      ...+++|..  .+..++    ....+.++||++||||-++..+.+.        ..+|++.|+++.  ||...++.....
T Consensus        82 lGiHRlWKd--~~v~~L----~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~--mL~vgkqRa~~~  153 (296)
T KOG1540|consen   82 LGIHRLWKD--MFVSKL----GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH--MLAVGKQRAKKR  153 (296)
T ss_pred             cchhHHHHH--Hhhhcc----CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH--HHHHHHHHHhhc
Confidence            456678832  222222    3346689999999999988866543        258999999965  999988888766


Q ss_pred             CCcce---EEEc---------CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506          118 KLNCR---LLMT---------SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       118 ~~~~~---~~~~---------d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                      ++...   .|..         |..||... +=-|-+..+.+..+++.+..|+.+
T Consensus       154 ~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG  207 (296)
T KOG1540|consen  154 PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG  207 (296)
T ss_pred             CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence            65422   2222         22788887 888888899999999999888764

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.01  E-value=2.3e-05  Score=68.40  Aligned_cols=71  Identities=11%  Similarity=0.054  Sum_probs=51.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC----------CEEEEEecCChHHHHHHHHHHHHHcC-CcceEEEc-----------C
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG----------SNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRLLMT-----------S  127 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g----------~~v~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~~-----------d  127 (158)
                      ...+|||.|||+|.+.+.++.+.          .++++.|+++.  ++..++.|+...+ ....+...           +
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~--a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~  108 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKT--LLKRAKKLLGEFALLEINVINFNSLSYVLLNIES  108 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHH--HHHHHHHHHhhcCCCCceeeeccccccccccccc
Confidence            45689999999999998766432          37899999965  8999999987654 22222111           1


Q ss_pred             --CCCcEEEecCCCCCc
Q 031506          128 --LPPSHICSRVLQDQS  142 (158)
Q Consensus       128 --~~fD~Ii~d~iy~~~  142 (158)
                        .+||+||++|+|-..
T Consensus       109 ~~~~fD~IIgNPPy~~~  125 (524)
T TIGR02987       109 YLDLFDIVITNPPYGRL  125 (524)
T ss_pred             ccCcccEEEeCCCcccc
Confidence              279999999998853

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.96  E-value=2.6e-05  Score=63.42  Aligned_cols=86  Identities=7%  Similarity=-0.024  Sum_probs=56.6

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhh---------cCCEEEEEecCChHHHHHHHHHHHHHcCCcce---
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK---------VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR---  122 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~---------~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~---  122 (158)
                      ...++++|.+......+.+|+|-.||+|.+-+.+.+         ...++++.|+++.  ++..++.|+..++....   
T Consensus        31 P~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~--~~~la~~nl~l~~~~~~~~~  108 (311)
T PF02384_consen   31 PREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPE--AVALAKLNLLLHGIDNSNIN  108 (311)
T ss_dssp             -HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HH--HHHHHHHHHHHTTHHCBGCE
T ss_pred             HHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHH--HHHHHHhhhhhhcccccccc
Confidence            345566666544445677899999999998887665         3458999999965  88888889887765432   


Q ss_pred             EEEcC----------CCCcEEEecCCCCCc
Q 031506          123 LLMTS----------LPPSHICSRVLQDQS  142 (158)
Q Consensus       123 ~~~~d----------~~fD~Ii~d~iy~~~  142 (158)
                      +...|          .+||+|+++|+|...
T Consensus       109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen  109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             EEES-TTTSHSCTST--EEEEEEE--CTCE
T ss_pred             ccccccccccccccccccccccCCCCcccc
Confidence            33332          279999988887765

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.94  E-value=9.6e-05  Score=58.50  Aligned_cols=106  Identities=19%  Similarity=0.181  Sum_probs=69.4

Q ss_pred             CCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhh--cCCEEEEEecCChHHHHHHHHHHHHHcCCcceE
Q 031506           46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL  123 (158)
Q Consensus        46 ~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~--~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~  123 (158)
                      .-+...++.+..-+.|+.++ .++.|++||=+|=+ =+.|++++.  ...+|+++|+++.  +++.+++.++..+++++.
T Consensus        21 DQ~~~T~eT~~~Ra~~~~~~-gdL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeR--ll~fI~~~a~~~gl~i~~   96 (243)
T PF01861_consen   21 DQGYATPETTLRRAALMAER-GDLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDER--LLDFINRVAEEEGLPIEA   96 (243)
T ss_dssp             T---B-HHHHHHHHHHHHHT-T-STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HH--HHHHHHHHHHHHT--EEE
T ss_pred             ccccccHHHHHHHHHHHHhc-CcccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHH--HHHHHHHHHHHcCCceEE
Confidence            35667888898889988875 45789999999954 567776554  3459999999986  999999999999988877


Q ss_pred             EEcCC----------CCcEEEecCCCCCccHHHHHHHHHHHh
Q 031506          124 LMTSL----------PPSHICSRVLQDQSSLRLIIIEVGIIL  155 (158)
Q Consensus       124 ~~~d~----------~fD~Ii~d~iy~~~~~~~ll~tl~~ll  155 (158)
                      ...|.          +||+++.||+|-.+-+.-+++.-...|
T Consensus        97 ~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~L  138 (243)
T PF01861_consen   97 VHYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEAL  138 (243)
T ss_dssp             E---TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB
T ss_pred             EEecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            76654          899999999999988888777654443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.94  E-value=5.6e-05  Score=60.21  Aligned_cols=84  Identities=13%  Similarity=0.082  Sum_probs=59.7

Q ss_pred             ccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-----------CC
Q 031506           66 RYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-----------LP  129 (158)
Q Consensus        66 ~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-----------~~  129 (158)
                      ....+|.+|||-|.|+|.++..+++. |  .+|+..|..+.  ..+.+++|++.+++.  +.+...|           ..
T Consensus        36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~--~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~  113 (247)
T PF08704_consen   36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFRED--RAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESD  113 (247)
T ss_dssp             TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHH--HHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTS
T ss_pred             cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHH--HHHHHHHHHHHcCCCCCceeEecceecccccccccCc
Confidence            34558999999999999999988864 3  39999999965  999999999998875  3343332           25


Q ss_pred             CcEEEecCCCCCccHHHHHHHH
Q 031506          130 PSHICSRVLQDQSSLRLIIIEV  151 (158)
Q Consensus       130 fD~Ii~d~iy~~~~~~~ll~tl  151 (158)
                      +|.|+.|.+--...++.+.+.|
T Consensus       114 ~DavfLDlp~Pw~~i~~~~~~L  135 (247)
T PF08704_consen  114 FDAVFLDLPDPWEAIPHAKRAL  135 (247)
T ss_dssp             EEEEEEESSSGGGGHHHHHHHE
T ss_pred             ccEEEEeCCCHHHHHHHHHHHH
Confidence            7999988877666666555443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.92  E-value=0.0001  Score=61.18  Aligned_cols=89  Identities=13%  Similarity=0.106  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHhcc-------cCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506           54 CSVILAEYVWQQR-------YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT  126 (158)
Q Consensus        54 ~~~~la~~l~~~~-------~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~  126 (158)
                      ++..|.+.+....       ...++.++|||||++|..+-.+.++|+.|+++|..+   |-..+    ..+ ..+.....
T Consensus       188 s~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~---l~~~L----~~~-~~V~h~~~  259 (357)
T PRK11760        188 STLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP---MAQSL----MDT-GQVEHLRA  259 (357)
T ss_pred             HHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh---cCHhh----hCC-CCEEEEec
Confidence            4555555544432       235788999999999999999999999999999764   33322    222 22222222


Q ss_pred             --------CCCCcEEEecCCCCCccHHHHHHH
Q 031506          127 --------SLPPSHICSRVLQDQSSLRLIIIE  150 (158)
Q Consensus       127 --------d~~fD~Ii~d~iy~~~~~~~ll~t  150 (158)
                              ..++|++++|.+-++.....++..
T Consensus       260 d~fr~~p~~~~vDwvVcDmve~P~rva~lm~~  291 (357)
T PRK11760        260 DGFKFRPPRKNVDWLVCDMVEKPARVAELMAQ  291 (357)
T ss_pred             cCcccCCCCCCCCEEEEecccCHHHHHHHHHH
Confidence                    226899999999888876666654

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.89  E-value=7.6e-05  Score=59.65  Aligned_cols=92  Identities=14%  Similarity=0.138  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC----CC
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL----PP  130 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~----~f  130 (158)
                      ..-+++.+.+.....++..|||+|+|+|.++..+++.+.+|+++|.++.  +++.+++... ..-++.+...|.    .+
T Consensus        15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~--~~~~L~~~~~-~~~~~~vi~~D~l~~~~~   91 (262)
T PF00398_consen   15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPD--LAKHLKERFA-SNPNVEVINGDFLKWDLY   91 (262)
T ss_dssp             HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHH--HHHHHHHHCT-TCSSEEEEES-TTTSCGG
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHh--HHHHHHHHhh-hcccceeeecchhccccH
Confidence            3445555555444447889999999999999999999999999999965  8888887665 333455555543    22


Q ss_pred             -------cEEEecCCCCCccHHHHHHHH
Q 031506          131 -------SHICSRVLQDQSSLRLIIIEV  151 (158)
Q Consensus       131 -------D~Ii~d~iy~~~~~~~ll~tl  151 (158)
                             ..|+++.+|+..  .+++..+
T Consensus        92 ~~~~~~~~~vv~NlPy~is--~~il~~l  117 (262)
T PF00398_consen   92 DLLKNQPLLVVGNLPYNIS--SPILRKL  117 (262)
T ss_dssp             GHCSSSEEEEEEEETGTGH--HHHHHHH
T ss_pred             HhhcCCceEEEEEecccch--HHHHHHH
Confidence                   244488888543  3444443

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.85  E-value=0.00015  Score=56.80  Aligned_cols=79  Identities=18%  Similarity=0.180  Sum_probs=55.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----CCcEEE-ecCCCC-
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----PPSHIC-SRVLQD-  140 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----~fD~Ii-~d~iy~-  140 (158)
                      +.++|||||+|+|..++.+++..  .++++.|+   |++++.+++     .-++++...|.     .+|+|+ ..++++ 
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl---p~v~~~~~~-----~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~  171 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL---PEVIEQAKE-----ADRVEFVPGDFFDPLPVADVYLLRHVLHDW  171 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE----HHHHCCHHH-----TTTEEEEES-TTTCCSSESEEEEESSGGGS
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc---Hhhhhcccc-----ccccccccccHHhhhccccceeeehhhhhc
Confidence            44689999999999999887764  48999999   457887777     33455555543     599999 999965 


Q ss_pred             -CccHHHHHHHHHHHhc
Q 031506          141 -QSSLRLIIIEVGIILL  156 (158)
Q Consensus       141 -~~~~~~ll~tl~~ll~  156 (158)
                       .+....+|+.++.-+.
T Consensus       172 ~d~~~~~iL~~~~~al~  188 (241)
T PF00891_consen  172 SDEDCVKILRNAAAALK  188 (241)
T ss_dssp             -HHHHHHHHHHHHHHSE
T ss_pred             chHHHHHHHHHHHHHhC
Confidence             4556667777766554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PHA01634 hypothetical protein

Probab=97.79  E-value=0.00011  Score=52.97  Aligned_cols=69  Identities=13%  Similarity=0.140  Sum_probs=54.8

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-CC-----CCcEEEecC
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-SL-----PPSHICSRV  137 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-d~-----~fD~Ii~d~  137 (158)
                      .++++++|+|+|++.|-.+|-.+.+|+ .|++.+.++.  ..+..+.|++.|.+-...... +|     +||+.+.||
T Consensus        25 idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~k--l~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~iDC  100 (156)
T PHA01634         25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEK--LRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVMDC  100 (156)
T ss_pred             eeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHH--HHHHHHHHhhhheeeeceeecccccccCCCcceEEEEc
Confidence            357899999999999999999999998 8999999976  888999999998764333222 33     788776444

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.79  E-value=0.00016  Score=60.79  Aligned_cols=85  Identities=9%  Similarity=-0.016  Sum_probs=66.6

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-----------------------------------------
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-----------------------------------------   93 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-----------------------------------------   93 (158)
                      -..||.-|........+..++|-=||+|.+.|.+|..+.                                         
T Consensus       176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~  255 (381)
T COG0116         176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP  255 (381)
T ss_pred             hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence            455666666655555667899999999999998888764                                         


Q ss_pred             EEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcCC--------CCcEEEecCCCCC
Q 031506           94 NVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTSL--------PPSHICSRVLQDQ  141 (158)
Q Consensus        94 ~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d~--------~fD~Ii~d~iy~~  141 (158)
                      .+++.|+++.  +++.++.|+...++..  .+...|.        .+|+||+||+|-.
T Consensus       256 ~~~G~Did~r--~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGe  311 (381)
T COG0116         256 IIYGSDIDPR--HIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGE  311 (381)
T ss_pred             eEEEecCCHH--HHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcch
Confidence            3779999976  9999999999999873  3444432        6899999999975

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.76  E-value=5.9e-05  Score=54.11  Aligned_cols=46  Identities=20%  Similarity=0.264  Sum_probs=40.1

Q ss_pred             eEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc
Q 031506           73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN  120 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~  120 (158)
                      .+||+|||.|..++.+++.+.  +|+++|.++.  +++.+++|++.|+..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~--~~~~l~~~~~~n~~~   48 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD--AYEILEENVKLNNLP   48 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH--HHHHHHHHHHHcCCC
Confidence            389999999999998888776  6999999965  999999999988753

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.67  E-value=0.0002  Score=51.97  Aligned_cols=48  Identities=17%  Similarity=0.149  Sum_probs=38.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHhh------cCCEEEEEecCChHHHHHHHHHHHHHcC
Q 031506           69 FSGANVVELGAGTSLPGLVAAK------VGSNVTLTDDSNRIEVLKNMRRVCEMNK  118 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~------~g~~v~~tD~~~~~~~l~~~~~n~~~n~  118 (158)
                      .+..+|+|+|||-|.+|..++.      .+.+|+++|.++.  .++.+++..+..+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~--~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNES--LVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcH--HHHHHHHHHHHhc
Confidence            4667999999999999998887      4569999999975  6776666555433

>PLN02823 spermine synthase

Probab=97.65  E-value=0.00037  Score=57.88  Aligned_cols=66  Identities=15%  Similarity=0.185  Sum_probs=49.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcC-----CcceEEEcC---------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK-----LNCRLLMTS---------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~-----~~~~~~~~d---------~~fD~I  133 (158)
                      ..++||.+|+|.|..+..+.+..  .+|+++|+++.  +++.++++...++     -++++...|         .+||+|
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~--vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI  180 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE--VVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI  180 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH--HHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence            46799999999999998766643  48999999965  9999999876542     234444333         389999


Q ss_pred             EecC
Q 031506          134 CSRV  137 (158)
Q Consensus       134 i~d~  137 (158)
                      +.|+
T Consensus       181 i~D~  184 (336)
T PLN02823        181 IGDL  184 (336)
T ss_pred             EecC
Confidence            9774

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.63  E-value=0.00036  Score=52.59  Aligned_cols=91  Identities=21%  Similarity=0.150  Sum_probs=62.7

Q ss_pred             ecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHH-cCCcceEEEc
Q 031506           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEM-NKLNCRLLMT  126 (158)
Q Consensus        51 vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~~~~~l~~~~~n~~~-n~~~~~~~~~  126 (158)
                      +=|++-.+|+-|...-..-++..|||+|.|||.++-.+.++|.   .+++++++++  .+..+.+.-.. |-++..+...
T Consensus        29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~d--F~~~L~~~~p~~~ii~gda~~l  106 (194)
T COG3963          29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPD--FVCHLNQLYPGVNIINGDAFDL  106 (194)
T ss_pred             ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHH--HHHHHHHhCCCccccccchhhH
Confidence            4588888899888866666888999999999999998888875   7999999975  66655543321 1111111111


Q ss_pred             --------CCCCcEEE-ecCCCCCcc
Q 031506          127 --------SLPPSHIC-SRVLQDQSS  143 (158)
Q Consensus       127 --------d~~fD~Ii-~d~iy~~~~  143 (158)
                              +..||.|+ +=|+-..+.
T Consensus       107 ~~~l~e~~gq~~D~viS~lPll~~P~  132 (194)
T COG3963         107 RTTLGEHKGQFFDSVISGLPLLNFPM  132 (194)
T ss_pred             HHHHhhcCCCeeeeEEeccccccCcH
Confidence                    33799999 655544433

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.58  E-value=0.00013  Score=56.00  Aligned_cols=63  Identities=13%  Similarity=0.173  Sum_probs=49.8

Q ss_pred             CCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC------CCcEEEe
Q 031506           71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL------PPSHICS  135 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~------~fD~Ii~  135 (158)
                      ...+-|||+|+|.++..+|+...+|++++.++.  ....+++|++.++.. ..+...|.      ..|+|+|
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk--~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvic  102 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPK--RARLAEENLHVPGDVNWEVVVGDARDYDFENADVVIC  102 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcH--HHHHhhhcCCCCCCcceEEEecccccccccccceeHH
Confidence            357999999999999999999779999999986  788999999887753 44444443      4566663

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.56  E-value=0.00012  Score=57.97  Aligned_cols=84  Identities=17%  Similarity=0.207  Sum_probs=62.3

Q ss_pred             eEEEeccCCCHHHHHHhhcC----CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------------CCcEEE-e
Q 031506           73 NVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------------PPSHIC-S  135 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~g----~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------------~fD~Ii-~  135 (158)
                      +|||+|||.|....-+.+-.    -.|.+.|.++.  +++..++|...+..++....+|.            .+|+|. -
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~--Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR--AIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChH--HHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence            79999999999888665543    37999999976  99999999887765554444432            678766 3


Q ss_pred             cCC--CCCccHHHHHHHHHHHhcCC
Q 031506          136 RVL--QDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       136 d~i--y~~~~~~~ll~tl~~ll~~~  158 (158)
                      =++  -+++.....++.+..+|+++
T Consensus       152 FvLSAi~pek~~~a~~nl~~llKPG  176 (264)
T KOG2361|consen  152 FVLSAIHPEKMQSVIKNLRTLLKPG  176 (264)
T ss_pred             EEEeccChHHHHHHHHHHHHHhCCC
Confidence            333  45677888888888888764

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.53  E-value=0.00053  Score=56.85  Aligned_cols=106  Identities=15%  Similarity=0.147  Sum_probs=67.0

Q ss_pred             EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHH-c------C---
Q 031506           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEM-N------K---  118 (158)
Q Consensus        50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~-n------~---  118 (158)
                      .-|-.+.++..|+.......++.+|||||||-|.--.-..+.+. .++++|++..  .++.+++..+. .      .   
T Consensus        42 NNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~--si~ea~~Ry~~~~~~~~~~~~~~  119 (331)
T PF03291_consen   42 NNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEE--SIEEARERYKQLKKRNNSKQYRF  119 (331)
T ss_dssp             HHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HH--HHHHHHHHHHHHHTSTT-HTSEE
T ss_pred             hHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHH--HHHHHHHHHHHhccccccccccc
Confidence            35888888888887544444778999999998877666666654 9999999964  88877776621 1      0   


Q ss_pred             -CcceEEEcC--------------CCCcEEE-ecCCCCC----ccHHHHHHHHHHHhcC
Q 031506          119 -LNCRLLMTS--------------LPPSHIC-SRVLQDQ----SSLRLIIIEVGIILLS  157 (158)
Q Consensus       119 -~~~~~~~~d--------------~~fD~Ii-~d~iy~~----~~~~~ll~tl~~ll~~  157 (158)
                       ..+.....|              .+||+|- --+++|.    +....+++.++..|.+
T Consensus       120 ~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~  178 (331)
T PF03291_consen  120 DFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP  178 (331)
T ss_dssp             CCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE
T ss_pred             cchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC
Confidence             112222221              2799999 6667553    4456677777777654

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.48  E-value=0.0006  Score=55.73  Aligned_cols=46  Identities=7%  Similarity=-0.094  Sum_probs=38.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHH
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEM  116 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~  116 (158)
                      .++..+||.+||.|..+..+++..   .+|++.|.++.  |++.+++++..
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~--al~~ak~~L~~   66 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPD--AIAAAKDRLKP   66 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHH--HHHHHHHhhcc
Confidence            356799999999999999887764   58999999964  99999888754

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.39  E-value=0.0011  Score=50.97  Aligned_cols=82  Identities=16%  Similarity=0.089  Sum_probs=53.6

Q ss_pred             eEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----------CCCcEEE---e
Q 031506           73 NVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-----------LPPSHIC---S  135 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-----------~~fD~Ii---~  135 (158)
                      .+||+|||.|-..+.+|+..  ..++++|+...  .+..+.+.+...++. +.+...|           ..+|-|.   -
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~--~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP   97 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKK--RVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP   97 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HH--HHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchH--HHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence            79999999999999877764  49999999964  777777777766653 5555543           2566665   4


Q ss_pred             cCCCCCcc-------HHHHHHHHHHHhcC
Q 031506          136 RVLQDQSS-------LRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~-------~~~ll~tl~~ll~~  157 (158)
                      || +....       -++++..++.+|.+
T Consensus        98 DP-WpK~rH~krRl~~~~fl~~~~~~L~~  125 (195)
T PF02390_consen   98 DP-WPKKRHHKRRLVNPEFLELLARVLKP  125 (195)
T ss_dssp             -----SGGGGGGSTTSHHHHHHHHHHEEE
T ss_pred             CC-CcccchhhhhcCCchHHHHHHHHcCC
Confidence            55 33332       46777777777654

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.32  E-value=0.0022  Score=55.54  Aligned_cols=84  Identities=10%  Similarity=0.025  Sum_probs=60.5

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL  128 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~  128 (158)
                      ++|...+..+...  ..++.+|||++||.|.=+..++.+ +  ..|++.|+++.  -++.+++|++..++. +.+...|.
T Consensus        98 ~sS~l~~~~L~~~--~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~--R~~~L~~nl~r~G~~nv~v~~~D~  173 (470)
T PRK11933         98 ASSMLPVAALFAD--DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSAS--RVKVLHANISRCGVSNVALTHFDG  173 (470)
T ss_pred             HHHHHHHHHhccC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCeEEEEeCch
Confidence            4555555555321  236789999999999988866654 2  38999999975  889999999998865 34443332


Q ss_pred             ---------CCcEEEecCCCC
Q 031506          129 ---------PPSHICSRVLQD  140 (158)
Q Consensus       129 ---------~fD~Ii~d~iy~  140 (158)
                               .||.|+.|++..
T Consensus       174 ~~~~~~~~~~fD~ILvDaPCS  194 (470)
T PRK11933        174 RVFGAALPETFDAILLDAPCS  194 (470)
T ss_pred             hhhhhhchhhcCeEEEcCCCC
Confidence                     699999777654

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.25  E-value=0.0023  Score=51.63  Aligned_cols=85  Identities=20%  Similarity=0.173  Sum_probs=54.1

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCC-cceEE-----E--cCC-CCcEEE
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLL-----M--TSL-PPSHIC  134 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~-----~--~d~-~fD~Ii  134 (158)
                      ..+...+|||+|||+|....++...   -.+++++|.++.  |++..+.-+..... ....+     .  .+. +.|+|+
T Consensus        30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi  107 (274)
T PF09243_consen   30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPE--MLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVI  107 (274)
T ss_pred             cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHH--HHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEE
Confidence            4678889999999999766555432   238999999965  88766654432211 11101     0  011 569999


Q ss_pred             -ecCCCCCccHHHHHHHHHHH
Q 031506          135 -SRVLQDQSSLRLIIIEVGII  154 (158)
Q Consensus       135 -~d~iy~~~~~~~ll~tl~~l  154 (158)
                       +.++...+. +...+.+..|
T Consensus       108 ~s~~L~EL~~-~~r~~lv~~L  127 (274)
T PF09243_consen  108 ASYVLNELPS-AARAELVRSL  127 (274)
T ss_pred             EehhhhcCCc-hHHHHHHHHH
Confidence             999988777 5555555444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.25  E-value=0.0029  Score=49.85  Aligned_cols=84  Identities=17%  Similarity=-0.014  Sum_probs=62.1

Q ss_pred             CeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcCC-----------CCcEEE--e
Q 031506           72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTSL-----------PPSHIC--S  135 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d~-----------~fD~Ii--~  135 (158)
                      ..+||+|||.|-.-+..|+...  .++++++...  .+..+.+.+...++ ++++...|.           ..|-|.  .
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~--~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F  127 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVP--GVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF  127 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehH--HHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence            4799999999999998888865  7999999975  78888888888888 777765532           455555  3


Q ss_pred             cCCCCCcc-------HHHHHHHHHHHhcC
Q 031506          136 RVLQDQSS-------LRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~-------~~~ll~tl~~ll~~  157 (158)
                      .-+++..-       .++++++++..|..
T Consensus       128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~  156 (227)
T COG0220         128 PDPWPKKRHHKRRLTQPEFLKLYARKLKP  156 (227)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHccC
Confidence            33344333       47788888887764

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.20  E-value=0.0025  Score=49.84  Aligned_cols=66  Identities=20%  Similarity=0.407  Sum_probs=43.0

Q ss_pred             CCeEEEeccCCCHHHHHHhhc--CCEEEEEecCCh-HHHHHHHHHHHHHcCCcceEEEc-------CCC-CcEEEecCC
Q 031506           71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR-IEVLKNMRRVCEMNKLNCRLLMT-------SLP-PSHICSRVL  138 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~-~~~l~~~~~n~~~n~~~~~~~~~-------d~~-fD~Ii~d~i  138 (158)
                      +++++|+|+|.|.+|+.+|-.  ..+|+.+|-... ...++.+.+-+..++  +.+...       +.+ ||+|.|=.+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n--v~i~~~RaE~~~~~~~~~D~vtsRAv  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN--VEIVHGRAEEFGQEKKQYDVVTSRAV  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC--eEEehhhHhhcccccccCcEEEeehc
Confidence            689999999999999987744  347999998875 123444444444433  333322       124 999995444

>PRK00536 speE spermidine synthase; Provisional

Probab=97.17  E-value=0.0034  Score=50.51  Aligned_cols=75  Identities=11%  Similarity=-0.036  Sum_probs=54.7

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH-----cCCcceEEEc-----CCCCcEEEecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRLLMT-----SLPPSHICSRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~~-----d~~fD~Ii~d~iy  139 (158)
                      +.++||=+|.|-|.....+.|...+|+++|+++.  +++.+++-+..     +..++++...     ..+||+||.|..|
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~--Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~~  149 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEK--ILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQEP  149 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHH--HHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCCC
Confidence            5689999999999999998888679999999975  89888883322     2223332221     1379999999887


Q ss_pred             CCccHHH
Q 031506          140 DQSSLRL  146 (158)
Q Consensus       140 ~~~~~~~  146 (158)
                      ..+.++.
T Consensus       150 ~~~fy~~  156 (262)
T PRK00536        150 DIHKIDG  156 (262)
T ss_pred             ChHHHHH
Confidence            7555433

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.17  E-value=0.00089  Score=57.35  Aligned_cols=51  Identities=22%  Similarity=0.396  Sum_probs=44.1

Q ss_pred             CeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEE
Q 031506           72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL  124 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~  124 (158)
                      ..|||+|+|||++++++++.|+ .|++.+.-..  |.+.+++-...|+...++.
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkP--M~d~arkI~~kng~SdkI~  119 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKP--MVDLARKIMHKNGMSDKIN  119 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhch--HHHHHHHHHhcCCCcccee
Confidence            3689999999999999999998 8999998864  9999999999998764443

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.15  E-value=0.00058  Score=54.34  Aligned_cols=48  Identities=17%  Similarity=0.259  Sum_probs=40.9

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc-CC-EEEEEecCChHHHHHHHHHHHHH
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEM  116 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~-g~-~v~~tD~~~~~~~l~~~~~n~~~  116 (158)
                      ..+.++.+||+||-+|.+++.+|+. |+ .|+++|+++.  .++.+++|+..
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~--LI~~Ark~~r~  104 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPV--LIQRARKEIRF  104 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHH--HHHHHHHhccc
Confidence            4567889999999999999988775 54 8999999976  89999999753

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.13  E-value=0.0029  Score=49.05  Aligned_cols=83  Identities=14%  Similarity=0.100  Sum_probs=57.3

Q ss_pred             eEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc-------ceE----EEcC-------CCCcE
Q 031506           73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-------CRL----LMTS-------LPPSH  132 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-------~~~----~~~d-------~~fD~  132 (158)
                      +|||||||||--+..+|+.-.  .-.-+|.++.  .+..++..+...++.       .++    |.+.       ..||.
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~--~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~  105 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDN--LRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA  105 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChH--HHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence            699999999999998877644  6667888864  556666666655432       111    1111       16999


Q ss_pred             EE-ecCCCCC--ccHHHHHHHHHHHhcC
Q 031506          133 IC-SRVLQDQ--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       133 Ii-~d~iy~~--~~~~~ll~tl~~ll~~  157 (158)
                      |+ ++.++-.  +..+.|++..+.+|.+
T Consensus       106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~  133 (204)
T PF06080_consen  106 IFCINMLHISPWSAVEGLFAGAARLLKP  133 (204)
T ss_pred             eeehhHHHhcCHHHHHHHHHHHHHhCCC
Confidence            99 8988664  4567788887777764

The function of this family is unknown.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.10  E-value=7.9e-05  Score=58.07  Aligned_cols=85  Identities=19%  Similarity=0.169  Sum_probs=59.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCCCCcEEE-ecCCCCCccHHHH
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSLPPSHIC-SRVLQDQSSLRLI  147 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~~fD~Ii-~d~iy~~~~~~~l  147 (158)
                      .+.++||||+|-|-++...+...-+|.+|+++..  |...+++.- -|-+. ..-..-|.+||+|. .+.+=...+.-.|
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~t--Mr~rL~kk~-ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kL  188 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWT--MRDRLKKKN-YNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKL  188 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHH--HHHHHhhcC-CceeeehhhhhcCceeehHHHHHHHHhhcChHHH
Confidence            3479999999999999988887779999999975  776655311 01010 01111244899999 7887777777778


Q ss_pred             HHHHHHHhcC
Q 031506          148 IIEVGIILLS  157 (158)
Q Consensus       148 l~tl~~ll~~  157 (158)
                      ++-+...+..
T Consensus       189 L~Di~~vl~p  198 (288)
T KOG3987|consen  189 LEDIHLVLAP  198 (288)
T ss_pred             HHHHHHHhcc
Confidence            8877776654

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.09  E-value=0.00054  Score=56.92  Aligned_cols=72  Identities=19%  Similarity=0.108  Sum_probs=56.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHH-------HHHHHHHHcCCcc---eEEEc---------CCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK-------NMRRVCEMNKLNC---RLLMT---------SLP  129 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~-------~~~~n~~~n~~~~---~~~~~---------d~~  129 (158)
                      .+|+.|.|=-.|||.+-+.+|..|+.|+++|++-.  ++.       +++.|.+..+...   .+..+         ...
T Consensus       207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr--~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~  284 (421)
T KOG2671|consen  207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYR--TVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK  284 (421)
T ss_pred             CCCCEEecCccccCceeeehhhhcceeeccccchh--eeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence            36788999999999999999999999999999964  554       5778888777442   22333         348


Q ss_pred             CcEEEecCCCCCc
Q 031506          130 PSHICSRVLQDQS  142 (158)
Q Consensus       130 fD~Ii~d~iy~~~  142 (158)
                      ||.|++||+|-..
T Consensus       285 fDaIvcDPPYGVR  297 (421)
T KOG2671|consen  285 FDAIVCDPPYGVR  297 (421)
T ss_pred             eeEEEeCCCcchh
Confidence            9999999999753

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.04  E-value=0.0018  Score=49.41  Aligned_cols=64  Identities=20%  Similarity=0.397  Sum_probs=41.7

Q ss_pred             eEEEeccCCCHHHHHHhhcC--CEEEEEecCCh-HHHHHHHHHHHHHcCCcceEEEc-------CCCCcEEEecCC
Q 031506           73 NVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR-IEVLKNMRRVCEMNKLNCRLLMT-------SLPPSHICSRVL  138 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~-~~~l~~~~~n~~~n~~~~~~~~~-------d~~fD~Ii~d~i  138 (158)
                      +++|+|+|.|.+|+.+|-..  .+++++|-... ...++.+.+.+...+  +.+...       ..+||+|++=.+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n--v~v~~~R~E~~~~~~~fd~v~aRAv  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN--VEVINGRAEEPEYRESFDVVTARAV  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS--EEEEES-HHHTTTTT-EEEEEEESS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC--EEEEEeeecccccCCCccEEEeehh
Confidence            79999999999999777654  38999999974 234444444444443  444332       238999995444

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.04  E-value=0.0011  Score=52.61  Aligned_cols=85  Identities=15%  Similarity=0.113  Sum_probs=58.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCC---cceEEEc----------CCCCcEEEe
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL---NCRLLMT----------SLPPSHICS  135 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~~----------d~~fD~Ii~  135 (158)
                      ++.+|||-+.|.|..++.+.++|+ +|+-++-++.  .++.+.-|=-.-++   .+++...          |..||+||-
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~--VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH  211 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN--VLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH  211 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC--eEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence            688999999999999999999999 9999999986  78776655322111   1233322          348999998


Q ss_pred             cCCCCCcc----HHHHHHHHHHHhc
Q 031506          136 RVLQDQSS----LRLIIIEVGIILL  156 (158)
Q Consensus       136 d~iy~~~~----~~~ll~tl~~ll~  156 (158)
                      ||+-..-.    -+.+.+.+..+|.
T Consensus       212 DPPRfS~AgeLYseefY~El~RiLk  236 (287)
T COG2521         212 DPPRFSLAGELYSEEFYRELYRILK  236 (287)
T ss_pred             CCCccchhhhHhHHHHHHHHHHHcC
Confidence            77633211    2344555555554

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.98  E-value=0.0043  Score=48.12  Aligned_cols=47  Identities=17%  Similarity=0.174  Sum_probs=40.2

Q ss_pred             EEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCcce
Q 031506           74 VVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCR  122 (158)
Q Consensus        74 vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~~  122 (158)
                      |.|+||--|.+++.+.+.|.  +++++|+++.  -++.++.|++.+++..+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~g--pL~~A~~~i~~~~l~~~   49 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPG--PLEKAKENIAKYGLEDR   49 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHH--HHHHHHHHHHHTT-TTT
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHHcCCccc
Confidence            68999999999999999887  8999999976  79999999999886533

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.96  E-value=0.0024  Score=50.55  Aligned_cols=54  Identities=19%  Similarity=0.151  Sum_probs=49.2

Q ss_pred             EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCCh
Q 031506           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (158)
Q Consensus        50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~  103 (158)
                      .+-.+++-|...+....-.++++.+||+|+-||-++-.+.++|+ +|+++|....
T Consensus        59 yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~  113 (245)
T COG1189          59 YVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG  113 (245)
T ss_pred             ccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC
Confidence            34578999999999988889999999999999999999999988 9999999875

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.0019  Score=50.43  Aligned_cols=69  Identities=14%  Similarity=0.187  Sum_probs=47.9

Q ss_pred             CceEecchHHHHHHHHHhccc--CCCCCeEEEeccCCCHHHHHHhhc----CCEEEEEecCChHHHHHHHHHHHHHc
Q 031506           47 YGLFVWPCSVILAEYVWQQRY--RFSGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMN  117 (158)
Q Consensus        47 ~g~~vW~~~~~la~~l~~~~~--~~~~~~vLELG~GtGl~~i~~a~~----g~~v~~tD~~~~~~~l~~~~~n~~~n  117 (158)
                      .|+.+-=++..+=.++++...  ..+|.+.||+|+|||.++-+++.+    |..++++|.-+  +.++.+++|+...
T Consensus        57 ~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~--eLVe~Sk~nl~k~  131 (237)
T KOG1661|consen   57 IGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIP--ELVEYSKKNLDKD  131 (237)
T ss_pred             cCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhH--HHHHHHHHHHHhh
Confidence            343333355555554444332  568999999999999998877753    33558888875  5999999998753

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.86  E-value=0.015  Score=47.26  Aligned_cols=83  Identities=11%  Similarity=-0.007  Sum_probs=56.5

Q ss_pred             CeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcC-----CcceEEEcCC---------CCcEEEe
Q 031506           72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNK-----LNCRLLMTSL---------PPSHICS  135 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~-----~~~~~~~~d~---------~fD~Ii~  135 (158)
                      ++||-+|-|.|.....+.+...  +++++|+++.  +++.+++-+..-.     -++++...|.         +||+|+.
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~--Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~  155 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPA--VIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV  155 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHH--HHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence            6999999999999999988874  9999999975  8998888665422     2233333332         7999995


Q ss_pred             cCCCCCc-----cHHHHHHHHHHHhc
Q 031506          136 RVLQDQS-----SLRLIIIEVGIILL  156 (158)
Q Consensus       136 d~iy~~~-----~~~~ll~tl~~ll~  156 (158)
                      |+.-...     ..+++.+.++..|.
T Consensus       156 D~tdp~gp~~~Lft~eFy~~~~~~L~  181 (282)
T COG0421         156 DSTDPVGPAEALFTEEFYEGCRRALK  181 (282)
T ss_pred             cCCCCCCcccccCCHHHHHHHHHhcC
Confidence            5433311     13555555555543

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=96.84  E-value=0.0016  Score=51.65  Aligned_cols=84  Identities=14%  Similarity=0.129  Sum_probs=62.8

Q ss_pred             CCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecCCCC
Q 031506           71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRVLQD  140 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~iy~  140 (158)
                      -..++|+|||.|.+...+...+. +++.+|.+-.  |++.++. ++-+++.......|        ..+|+|| +-.+++
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~--M~~s~~~-~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW  149 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYD--MIKSCRD-AQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW  149 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchH--HHHHhhc-cCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence            34699999999999998888877 8999999976  8877653 22244443333332        2899999 999999


Q ss_pred             CccHHHHHHHHHHHhcC
Q 031506          141 QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       141 ~~~~~~ll~tl~~ll~~  157 (158)
                      ..+++.....++..|++
T Consensus       150 ~NdLPg~m~~ck~~lKP  166 (325)
T KOG2940|consen  150 TNDLPGSMIQCKLALKP  166 (325)
T ss_pred             hccCchHHHHHHHhcCC
Confidence            98888877777766653

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=96.80  E-value=0.0097  Score=46.16  Aligned_cols=81  Identities=10%  Similarity=0.012  Sum_probs=43.3

Q ss_pred             CCCCCeEEEeccCCCHHHHHHh-hcCC-EEEEEecCChHHHHHHHHHH-------HHHcCCc---ceEEEcCC-------
Q 031506           68 RFSGANVVELGAGTSLPGLVAA-KVGS-NVTLTDDSNRIEVLKNMRRV-------CEMNKLN---CRLLMTSL-------  128 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a-~~g~-~v~~tD~~~~~~~l~~~~~n-------~~~n~~~---~~~~~~d~-------  128 (158)
                      ..++...+|||||.|.+-+.+| ..+. +.+++++.+.  ..+.++.+       .+..+..   +.+...|.       
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~--~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~  117 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE--LHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK  117 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH--HHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH--HHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence            3457789999999999888555 4555 6999999974  33333332       2233332   23333332       


Q ss_pred             ----CCcEEE-ecCCCCCccHHHHHHH
Q 031506          129 ----PPSHIC-SRVLQDQSSLRLIIIE  150 (158)
Q Consensus       129 ----~fD~Ii-~d~iy~~~~~~~ll~t  150 (158)
                          .-|+|+ ++..|.++....|.+.
T Consensus       118 ~~~s~AdvVf~Nn~~F~~~l~~~L~~~  144 (205)
T PF08123_consen  118 DIWSDADVVFVNNTCFDPDLNLALAEL  144 (205)
T ss_dssp             HHGHC-SEEEE--TTT-HHHHHHHHHH
T ss_pred             hhhcCCCEEEEeccccCHHHHHHHHHH
Confidence                579999 8888877766666433

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG2730 consensus Methylase [General function prediction only]

Probab=96.62  E-value=0.004  Score=48.98  Aligned_cols=88  Identities=14%  Similarity=0.030  Sum_probs=62.4

Q ss_pred             cchHHHHHHHHHhcccC-CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEE--EcCC
Q 031506           52 WPCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL--MTSL  128 (158)
Q Consensus        52 W~~~~~la~~l~~~~~~-~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~--~~d~  128 (158)
                      |-+....+.++...-.. .....|+|.-||.|.-.+..|..|..|+++|+++.  =+..+++|++..|+..+++  ..|+
T Consensus        75 svTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPi--kIa~AkhNaeiYGI~~rItFI~GD~  152 (263)
T KOG2730|consen   75 SVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPV--KIACARHNAEVYGVPDRITFICGDF  152 (263)
T ss_pred             EeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHH--HHHHHhccceeecCCceeEEEechH
Confidence            33334444444432211 15567999999999999999999999999999964  7889999999999876554  3333


Q ss_pred             ------------CCcEEE-ecCCCCC
Q 031506          129 ------------PPSHIC-SRVLQDQ  141 (158)
Q Consensus       129 ------------~fD~Ii-~d~iy~~  141 (158)
                                  .+|+++ +.|--.+
T Consensus       153 ld~~~~lq~~K~~~~~vf~sppwggp  178 (263)
T KOG2730|consen  153 LDLASKLKADKIKYDCVFLSPPWGGP  178 (263)
T ss_pred             HHHHHHHhhhhheeeeeecCCCCCCc
Confidence                        355888 7765433

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.60  E-value=0.0069  Score=48.08  Aligned_cols=74  Identities=14%  Similarity=0.164  Sum_probs=51.6

Q ss_pred             CCCeEEEeccCCC-HHHH-HHhhcCCEEEEEecCChHHHHHHHHHHHHHc-CCc--ceE-------------EEcCCCCc
Q 031506           70 SGANVVELGAGTS-LPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLN--CRL-------------LMTSLPPS  131 (158)
Q Consensus        70 ~~~~vLELG~GtG-l~~i-~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n-~~~--~~~-------------~~~d~~fD  131 (158)
                      ++.++||+|.|.- +.-+ -.-.+|...+++|+++.  .++.++.++..| ++.  ++.             ++.+..||
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~--sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd  155 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQ--SLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD  155 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHH--HHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence            4557899998843 2222 34456789999999976  899999999998 443  111             12244899


Q ss_pred             EEEecCCCCCccHH
Q 031506          132 HICSRVLQDQSSLR  145 (158)
Q Consensus       132 ~Ii~d~iy~~~~~~  145 (158)
                      ..+++|+||....+
T Consensus       156 ~tlCNPPFh~s~~d  169 (292)
T COG3129         156 ATLCNPPFHDSAAD  169 (292)
T ss_pred             eEecCCCcchhHHH
Confidence            99988888876533

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.57  E-value=0.0082  Score=48.80  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=63.6

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC----------CCcEE
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL----------PPSHI  133 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~----------~fD~I  133 (158)
                      .++.|+.|+=+| ---+.|++++.-|.  +|.++|+++.  .++.+.+-++..+.+ +.+..+|.          +||++
T Consensus       149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDER--li~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvf  225 (354)
T COG1568         149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDER--LIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVF  225 (354)
T ss_pred             cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHH--HHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCee
Confidence            356788999999 66788887776654  9999999986  888888888877765 55555543          89999


Q ss_pred             EecCCCCCccHHHHHHH
Q 031506          134 CSRVLQDQSSLRLIIIE  150 (158)
Q Consensus       134 i~d~iy~~~~~~~ll~t  150 (158)
                      +.||+|-...+..++..
T Consensus       226 iTDPpeTi~alk~FlgR  242 (354)
T COG1568         226 ITDPPETIKALKLFLGR  242 (354)
T ss_pred             ecCchhhHHHHHHHHhc
Confidence            99999988877776643

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.55  E-value=0.014  Score=46.42  Aligned_cols=85  Identities=13%  Similarity=0.066  Sum_probs=56.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHc-----CCcceEEEcC---------C-CCcE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRLLMTS---------L-PPSH  132 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~~d---------~-~fD~  132 (158)
                      +.++||=||-|.|.....+.+..  .+|+++|+++.  +++.+++-....     .-++++...|         . +||+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~--Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv  153 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPE--VVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV  153 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HH--HHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChH--HHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence            57899999999999998888776  49999999965  889888865542     2345555443         2 7999


Q ss_pred             EEecCCC---CCcc--HHHHHHHHHHHhc
Q 031506          133 ICSRVLQ---DQSS--LRLIIIEVGIILL  156 (158)
Q Consensus       133 Ii~d~iy---~~~~--~~~ll~tl~~ll~  156 (158)
                      |+.|+.-   ....  ..+.++.++..|.
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~  182 (246)
T PF01564_consen  154 IIVDLTDPDGPAPNLFTREFYQLCKRRLK  182 (246)
T ss_dssp             EEEESSSTTSCGGGGSSHHHHHHHHHHEE
T ss_pred             EEEeCCCCCCCcccccCHHHHHHHHhhcC
Confidence            9954442   2221  3455666655553

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=96.53  E-value=0.0074  Score=45.15  Aligned_cols=51  Identities=22%  Similarity=0.175  Sum_probs=39.0

Q ss_pred             chHHHHHHHHHhcc-cCC-CCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCCh
Q 031506           53 PCSVILAEYVWQQR-YRF-SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR  103 (158)
Q Consensus        53 ~~~~~la~~l~~~~-~~~-~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~  103 (158)
                      .++..|.+-..+.. ... .+.+||||||++|..+-.+.+++   ..|+++|+.+.
T Consensus         4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen    4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            35667777666655 222 45899999999999999999888   59999999973

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.42  E-value=0.012  Score=48.02  Aligned_cols=86  Identities=17%  Similarity=0.088  Sum_probs=56.0

Q ss_pred             CCeEEEeccCCC----HHHHHHhhc------CCEEEEEecCChHHHHHHHHHHHH----HcCC-----------------
Q 031506           71 GANVVELGAGTS----LPGLVAAKV------GSNVTLTDDSNRIEVLKNMRRVCE----MNKL-----------------  119 (158)
Q Consensus        71 ~~~vLELG~GtG----l~~i~~a~~------g~~v~~tD~~~~~~~l~~~~~n~~----~n~~-----------------  119 (158)
                      .-||.-.||.||    .+++++...      ..+|++||+++.  +++.+++.+-    ..++                 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~--aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~  193 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTE--VLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHE  193 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHH--HHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCC
Confidence            369999999999    455555442      248999999975  8988877530    0000                 


Q ss_pred             ---c--------ceEEEcC---------CCCcEEE-ecCCCCC--ccHHHHHHHHHHHhcCC
Q 031506          120 ---N--------CRLLMTS---------LPPSHIC-SRVLQDQ--SSLRLIIIEVGIILLSS  158 (158)
Q Consensus       120 ---~--------~~~~~~d---------~~fD~Ii-~d~iy~~--~~~~~ll~tl~~ll~~~  158 (158)
                         .        +.+...|         .+||+|+ -+++.|.  +....+++.+...|.++
T Consensus       194 ~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg  255 (287)
T PRK10611        194 GLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD  255 (287)
T ss_pred             ceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence               0        1111111         2799999 6776443  55788888888887653

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.37  E-value=0.016  Score=45.75  Aligned_cols=83  Identities=8%  Similarity=0.028  Sum_probs=58.8

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc-----------C---C
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT-----------S---L  128 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~-----------d---~  128 (158)
                      .++.+++||||.=||.-++..|..   +.+|++.|+++.  ..+...+-.+..+..  +++...           +   .
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~--~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~  148 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDAD--AYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESG  148 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChH--HHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCC
Confidence            457889999999999888876654   569999999975  777777666666654  333222           1   2


Q ss_pred             CCcEEE--ecCCCCCccHHHHHHHHH
Q 031506          129 PPSHIC--SRVLQDQSSLRLIIIEVG  152 (158)
Q Consensus       129 ~fD~Ii--~d~iy~~~~~~~ll~tl~  152 (158)
                      .||+++  +|=-.|...++.+++.++
T Consensus       149 tfDfaFvDadK~nY~~y~e~~l~Llr  174 (237)
T KOG1663|consen  149 TFDFAFVDADKDNYSNYYERLLRLLR  174 (237)
T ss_pred             ceeEEEEccchHHHHHHHHHHHhhcc
Confidence            899999  665555566676666543

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.33  E-value=0.036  Score=46.38  Aligned_cols=69  Identities=17%  Similarity=0.055  Sum_probs=51.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcC----CEEEEEecCChHHHHHHHHHHHHHcCCcc-eEEEcCC-----------CCcE
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RLLMTSL-----------PPSH  132 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g----~~v~~tD~~~~~~~l~~~~~n~~~n~~~~-~~~~~d~-----------~fD~  132 (158)
                      .++.+|||+.|+.|.=+..++.+.    ..|++.|.++.  =++.+++|++..++.. .+...|.           +||.
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~--Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~  232 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPK--RLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR  232 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHH--HHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence            467899999999997777655543    45799999975  7899999999988764 3333221           4999


Q ss_pred             EEecCCC
Q 031506          133 ICSRVLQ  139 (158)
Q Consensus       133 Ii~d~iy  139 (158)
                      |+.|++.
T Consensus       233 iLlDaPC  239 (355)
T COG0144         233 ILLDAPC  239 (355)
T ss_pred             EEECCCC
Confidence            9966654

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.25  E-value=0.046  Score=44.31  Aligned_cols=89  Identities=13%  Similarity=0.067  Sum_probs=64.3

Q ss_pred             CceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCcc-e
Q 031506           47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC-R  122 (158)
Q Consensus        47 ~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~-~  122 (158)
                      ..+.+++.+-.++.+++.   ..++.+|||++|+.|.=+..++.. +  ..|++.|++..  -+..++.|++..+... .
T Consensus        65 G~~~vQd~sS~l~~~~L~---~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~--Rl~~l~~~~~r~g~~~v~  139 (283)
T PF01189_consen   65 GLFYVQDESSQLVALALD---PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPK--RLKRLKENLKRLGVFNVI  139 (283)
T ss_dssp             TSEEEHHHHHHHHHHHHT---TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHH--HHHHHHHHHHHTT-SSEE
T ss_pred             CcEEeccccccccccccc---ccccccccccccCCCCceeeeeecccchhHHHHhccCHH--HHHHHHHHHHhcCCceEE
Confidence            456788777777766654   236778999999999888766654 3  39999999975  7889999999888753 3


Q ss_pred             EEEcC----------CCCcEEEecCCCC
Q 031506          123 LLMTS----------LPPSHICSRVLQD  140 (158)
Q Consensus       123 ~~~~d----------~~fD~Ii~d~iy~  140 (158)
                      +...|          ..||.|+.|++..
T Consensus       140 ~~~~D~~~~~~~~~~~~fd~VlvDaPCS  167 (283)
T PF01189_consen  140 VINADARKLDPKKPESKFDRVLVDAPCS  167 (283)
T ss_dssp             EEESHHHHHHHHHHTTTEEEEEEECSCC
T ss_pred             EEeeccccccccccccccchhhcCCCcc
Confidence            33232          1599999666543

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.24  E-value=0.013  Score=47.16  Aligned_cols=64  Identities=13%  Similarity=-0.004  Sum_probs=46.0

Q ss_pred             eEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc---C--CCCcEEE-ecCC
Q 031506           73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT---S--LPPSHIC-SRVL  138 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~---d--~~fD~Ii-~d~i  138 (158)
                      +++||-||.|.++..+.+.|. .|.++|.++.  +++..++|....-...++...   +  ..+|+|+ +-|+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~--a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPC   72 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKS--AAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPC   72 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHH--HHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCC
Confidence            699999999999998888888 5788999975  888888886432122222222   2  2799999 5444

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=96.15  E-value=0.0075  Score=51.49  Aligned_cols=85  Identities=21%  Similarity=0.213  Sum_probs=60.1

Q ss_pred             ceEEEEeccCC---CCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHH
Q 031506           34 SFSIAIIENMK---EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNM  110 (158)
Q Consensus        34 ~~~~~i~~~~~---~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~  110 (158)
                      .+....+|...   ..+|-.-|.+- +..+.-.-..-...|..|.|+-||.|-+++-+++.++.|++-|+++  ++++.+
T Consensus       211 n~vtevre~~~~Fk~DfskVYWnsR-L~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNp--esik~L  287 (495)
T KOG2078|consen  211 NLVTEVREGGERFKFDFSKVYWNSR-LSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNP--ESIKWL  287 (495)
T ss_pred             ceEEEEecCCeeEEEecceEEeecc-chhHHHHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCH--HHHHHH
Confidence            34445554321   23555568843 3332221112334677899999999999999999999999999996  599999


Q ss_pred             HHHHHHcCCcc
Q 031506          111 RRVCEMNKLNC  121 (158)
Q Consensus       111 ~~n~~~n~~~~  121 (158)
                      +.|++.|.+..
T Consensus       288 k~ni~lNkv~~  298 (495)
T KOG2078|consen  288 KANIKLNKVDP  298 (495)
T ss_pred             HHhccccccch
Confidence            99999998754

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=95.98  E-value=0.17  Score=41.47  Aligned_cols=84  Identities=17%  Similarity=0.139  Sum_probs=58.4

Q ss_pred             CCCeEEEeccCCCHHHH-HHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcCC-----------CCcE
Q 031506           70 SGANVVELGAGTSLPGL-VAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTSL-----------PPSH  132 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i-~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d~-----------~fD~  132 (158)
                      ..-+|||+.||.|.-=+ ++.+..   .+|.+.|+++.  .++..++-++.+++..  ++...|.           ++++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~--Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l  212 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPI--NVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL  212 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHH--HHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence            55699999999997766 333332   38999999975  8999999999988863  5554432           6899


Q ss_pred             EE-ecCCCCCcc---HHHHHHHHHHHh
Q 031506          133 IC-SRVLQDQSS---LRLIIIEVGIIL  155 (158)
Q Consensus       133 Ii-~d~iy~~~~---~~~ll~tl~~ll  155 (158)
                      ++ +-.+-..++   +...++-++..+
T Consensus       213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al  239 (311)
T PF12147_consen  213 AIVSGLYELFPDNDLVRRSLAGLARAL  239 (311)
T ss_pred             EEEecchhhCCcHHHHHHHHHHHHHHh
Confidence            99 877655555   333444444443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.86  E-value=0.068  Score=46.79  Aligned_cols=86  Identities=10%  Similarity=-0.020  Sum_probs=55.7

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc----------CCCCcEEE--
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT----------SLPPSHIC--  134 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~----------d~~fD~Ii--  134 (158)
                      .+..+||+|||.|-..+.+|+...  .++++|+...  .+..+.+.+...++. +++...          +..+|-|.  
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~--~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~  424 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLN--GVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL  424 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHH--HHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence            456899999999999998888754  8999999974  555555555555442 333322          22577666  


Q ss_pred             -ecCCCCCc------cHHHHHHHHHHHhcC
Q 031506          135 -SRVLQDQS------SLRLIIIEVGIILLS  157 (158)
Q Consensus       135 -~d~iy~~~------~~~~ll~tl~~ll~~  157 (158)
                       .||=.-..      ..+++++.++.+|.+
T Consensus       425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~  454 (506)
T PRK01544        425 FPDPWIKNKQKKKRIFNKERLKILQDKLKD  454 (506)
T ss_pred             CCCCCCCCCCccccccCHHHHHHHHHhcCC
Confidence             34432221      146777777777764

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=95.79  E-value=0.12  Score=42.06  Aligned_cols=80  Identities=10%  Similarity=0.022  Sum_probs=55.7

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEc----------CCCCcE
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMT----------SLPPSH  132 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~----------d~~fD~  132 (158)
                      ..+|.+|||-|.|+|.++..+++.-   .+++-.|+.+.  -.+.+++-.+..++..  .+..-          +..+|.
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~--Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDa  180 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHET--RAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADA  180 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHH--HHHHHHHHHHHhCCCcceEEEEeecccCCccccccccce
Confidence            4478899999999999999888864   28999999764  5556666666666542  22211          237888


Q ss_pred             EEecCCCCCccHHHHHH
Q 031506          133 ICSRVLQDQSSLRLIII  149 (158)
Q Consensus       133 Ii~d~iy~~~~~~~ll~  149 (158)
                      |+.|.+-....++.+.+
T Consensus       181 VFLDlPaPw~AiPha~~  197 (314)
T KOG2915|consen  181 VFLDLPAPWEAIPHAAK  197 (314)
T ss_pred             EEEcCCChhhhhhhhHH
Confidence            88777766555555444

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=95.65  E-value=0.11  Score=41.97  Aligned_cols=86  Identities=16%  Similarity=0.047  Sum_probs=54.6

Q ss_pred             CCCeEEEeccCCC----HHHHHHhhcC-------CEEEEEecCChHHHHHHHHHHHHH-----cCCc-------------
Q 031506           70 SGANVVELGAGTS----LPGLVAAKVG-------SNVTLTDDSNRIEVLKNMRRVCEM-----NKLN-------------  120 (158)
Q Consensus        70 ~~~~vLELG~GtG----l~~i~~a~~g-------~~v~~tD~~~~~~~l~~~~~n~~~-----n~~~-------------  120 (158)
                      +.-+|.-.||+||    .+++++...+       .+|+|||++..  +++.++.-+=-     .++.             
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~--~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~  173 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLS--VLEKARAGIYPSRELLRGLPPELLRRYFERGGD  173 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHH--HHHHHhcCCCChhHhhccCCHHHHhhhEeecCC
Confidence            4569999999999    5555555432       38999999976  88877643210     1111             


Q ss_pred             ------------ceEEEcCC--------CCcEEE-ecCC-CC-CccHHHHHHHHHHHhcC
Q 031506          121 ------------CRLLMTSL--------PPSHIC-SRVL-QD-QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       121 ------------~~~~~~d~--------~fD~Ii-~d~i-y~-~~~~~~ll~tl~~ll~~  157 (158)
                                  +++...|+        +||+|+ =|++ |. .+.-..++..++..|.+
T Consensus       174 ~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~  233 (268)
T COG1352         174 GSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP  233 (268)
T ss_pred             CcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC
Confidence                        01111121        699999 5554 54 45567788888887765

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=95.64  E-value=0.039  Score=46.65  Aligned_cols=79  Identities=20%  Similarity=0.146  Sum_probs=52.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--C-CEEEEEecCChHHHHHHHHHHHHHcCCcc---eEEEcC---------CCCcEEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNC---RLLMTS---------LPPSHIC  134 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~~---~~~~~d---------~~fD~Ii  134 (158)
                      .+.++||.=||||+=|+-.++.  + .+|++-|+++.  +++.+++|++.|++..   .+...|         ..||+|=
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~--a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID  126 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPE--AVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID  126 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HH--HHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHH--HHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE
Confidence            3458999999999999977776  3 38999999965  9999999999999876   333322         2799988


Q ss_pred             ecCCCCC-ccHHHHHHH
Q 031506          135 SRVLQDQ-SSLRLIIIE  150 (158)
Q Consensus       135 ~d~iy~~-~~~~~ll~t  150 (158)
                      -||.-.+ +-++..++.
T Consensus       127 lDPfGSp~pfldsA~~~  143 (377)
T PF02005_consen  127 LDPFGSPAPFLDSALQA  143 (377)
T ss_dssp             E--SS--HHHHHHHHHH
T ss_pred             eCCCCCccHhHHHHHHH
Confidence            8887665 334444443

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.51  E-value=0.044  Score=41.56  Aligned_cols=60  Identities=15%  Similarity=0.105  Sum_probs=42.7

Q ss_pred             EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 031506           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~  112 (158)
                      +.-+-...|.+.+.+.. ..++..|||--||+|..++++.++|.+.+++|+++.  .++.+++
T Consensus       172 h~~~kP~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~--y~~~a~~  231 (231)
T PF01555_consen  172 HPTQKPVELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEE--YCEIAKK  231 (231)
T ss_dssp             -TT-S-HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHH--HHHHHHH
T ss_pred             eeecCCHHHHHHHHHhh-hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHH--HHHHhcC
Confidence            44455677777776543 236789999999999999999999999999999964  7766653

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.46  E-value=0.049  Score=45.17  Aligned_cols=75  Identities=25%  Similarity=0.339  Sum_probs=55.3

Q ss_pred             ceEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHH
Q 031506           34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM  110 (158)
Q Consensus        34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~  110 (158)
                      .+-.++.++.+.+.|..+=|  +.++-..++...-..+.+||=+||| .|++++++|+ .|+ +|+++|+.+.  -++.+
T Consensus       135 dfc~KLPd~vs~eeGAl~eP--LsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~--Rle~A  210 (354)
T KOG0024|consen  135 DFCYKLPDNVSFEEGALIEP--LSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVAN--RLELA  210 (354)
T ss_pred             HheeeCCCCCchhhcccccc--hhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHH--HHHHH
Confidence            46677877776666666555  4444444554455578899999999 8999998877 476 9999999975  67777


Q ss_pred             HH
Q 031506          111 RR  112 (158)
Q Consensus       111 ~~  112 (158)
                      ++
T Consensus       211 k~  212 (354)
T KOG0024|consen  211 KK  212 (354)
T ss_pred             HH
Confidence            66

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=95.45  E-value=0.11  Score=43.27  Aligned_cols=86  Identities=17%  Similarity=0.158  Sum_probs=55.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcC-------CcceEEEcC--------------
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNK-------LNCRLLMTS--------------  127 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~-------~~~~~~~~d--------------  127 (158)
                      ++..+++||||-|.--+-.-+.|. +++++|+.+.  .++.+++.-..-.       ..+.+...|              
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAev--SI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d  194 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEV--SINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD  194 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccceEeeehhhc--cHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence            456799999999988888888877 8999999986  7777766543211       112233222              


Q ss_pred             CCCcEEE-ecCCCC-C---ccHHHHHHHHHHHhcC
Q 031506          128 LPPSHIC-SRVLQD-Q---SSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 ~~fD~Ii-~d~iy~-~---~~~~~ll~tl~~ll~~  157 (158)
                      .+||+|- -=+++| -   +...-++..++..|.+
T Consensus       195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp  229 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP  229 (389)
T ss_pred             CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC
Confidence            2499998 445544 2   3345556666665554

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.42  E-value=0.22  Score=33.30  Aligned_cols=79  Identities=22%  Similarity=0.192  Sum_probs=45.8

Q ss_pred             EEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc-------C----CCCcEEE-ecC
Q 031506           74 VVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT-------S----LPPSHIC-SRV  137 (158)
Q Consensus        74 vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~-------d----~~fD~Ii-~d~  137 (158)
                      ++|+|||+|... .+++..   ..++++|.++.  ++...+.+....... +.+...       +    ..||++. ...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  128 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPE--MLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLV  128 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHH--HHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence            999999999876 333332   47888899864  676644433222111 122111       1    1588887 555


Q ss_pred             CCCCccHHHHHHHHHHHhc
Q 031506          138 LQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~ll~  156 (158)
                      .++.. ...++..+...+.
T Consensus       129 ~~~~~-~~~~~~~~~~~l~  146 (257)
T COG0500         129 LHLLP-PAKALRELLRVLK  146 (257)
T ss_pred             hhcCC-HHHHHHHHHHhcC
Confidence            44444 5666666666554

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=95.38  E-value=0.04  Score=40.65  Aligned_cols=61  Identities=10%  Similarity=-0.080  Sum_probs=45.1

Q ss_pred             EEEecCChHHHHHHHHHHHHHcC----CcceEEEcC--------CCCcEEE-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506           96 TLTDDSNRIEVLKNMRRVCEMNK----LNCRLLMTS--------LPPSHIC-SRVLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus        96 ~~tD~~~~~~~l~~~~~n~~~n~----~~~~~~~~d--------~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                      +++|.++.  |++.++++.....    .++++...|        ..||+|+ +.++.+.++....++.+..+|.++
T Consensus         1 ~GvD~S~~--ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG   74 (160)
T PLN02232          1 MGLDFSSE--QLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG   74 (160)
T ss_pred             CeEcCCHH--HHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence            47899965  9999887765322    124444433        2799999 888888889999999999988764

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=95.32  E-value=0.042  Score=43.02  Aligned_cols=81  Identities=12%  Similarity=0.079  Sum_probs=48.9

Q ss_pred             CCCeEEEeccCCCHHHH-HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc--------CCCCcEEE-ecCC
Q 031506           70 SGANVVELGAGTSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT--------SLPPSHIC-SRVL  138 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i-~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~--------d~~fD~Ii-~d~i  138 (158)
                      ...+.||.|||-|.++- ++.+...+|-++|..+.  .++.+++.+...... .++...        ..+||+|+ -=|+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~--Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l  132 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEK--FLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL  132 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HH--HHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHH--HHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence            45689999999999998 56777779999999975  888888766542212 233322        23899999 5555


Q ss_pred             CCCcc--HHHHHHHHH
Q 031506          139 QDQSS--LRLIIIEVG  152 (158)
Q Consensus       139 y~~~~--~~~ll~tl~  152 (158)
                      -|..+  +-.+++..+
T Consensus       133 ghLTD~dlv~fL~RCk  148 (218)
T PF05891_consen  133 GHLTDEDLVAFLKRCK  148 (218)
T ss_dssp             GGS-HHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHH
Confidence            55444  333444433

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.29  E-value=0.06  Score=45.26  Aligned_cols=80  Identities=16%  Similarity=0.164  Sum_probs=59.0

Q ss_pred             CCeEEEeccCCCHHHHHHhh-cCC-EEEEEecCChHHHHHHHHHHHHHc-CCcceEEEcC---------CCCcEEEecCC
Q 031506           71 GANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMN-KLNCRLLMTS---------LPPSHICSRVL  138 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~~n~~~n-~~~~~~~~~d---------~~fD~Ii~d~i  138 (158)
                      ..+|+|-=+|||+=||-.+. .+. +|++-|+++.  +++.+++|+..| +.+..+...|         ..||+|=-||+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~--Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPF  130 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPK--AVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPF  130 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHH--HHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCC
Confidence            67999999999999997665 455 8999999975  999999999999 4444443332         27998878887


Q ss_pred             CCCc-cHHHHHHHHH
Q 031506          139 QDQS-SLRLIIIEVG  152 (158)
Q Consensus       139 y~~~-~~~~ll~tl~  152 (158)
                      -.+. -++..++.+.
T Consensus       131 GSPaPFlDaA~~s~~  145 (380)
T COG1867         131 GSPAPFLDAALRSVR  145 (380)
T ss_pred             CCCchHHHHHHHHhh
Confidence            6543 3444444443

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.94  E-value=0.042  Score=40.91  Aligned_cols=48  Identities=19%  Similarity=0.138  Sum_probs=38.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL  119 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~  119 (158)
                      +..+.+|||+|-|.+-+.++++|. .-+++++++-  .+..++-..-..+.
T Consensus        72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpw--LVaysrl~a~R~g~  120 (199)
T KOG4058|consen   72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPW--LVAYSRLHAWRAGC  120 (199)
T ss_pred             CCCcEEeccCCCceeehhhhhhCCCcCCceeccHH--HHHHHHHHHHHHhc
Confidence            345799999999999999999995 8999999964  67777766655554

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.91  E-value=0.46  Score=38.47  Aligned_cols=35  Identities=26%  Similarity=0.112  Sum_probs=31.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCCh
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~  103 (158)
                      ..+.+||==|||.|.++--+|++|..+.+.+.|-.
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~   89 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYF   89 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhccceEEEEEchHH
Confidence            35579999999999999999999999999999964

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.86  E-value=0.18  Score=39.63  Aligned_cols=50  Identities=16%  Similarity=0.205  Sum_probs=43.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCcc
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNC  121 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~  121 (158)
                      ++.++.|+||--|.+.+.+-+.+.  .+++.|+++.  -++.+.+|+..+++..
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~g--pl~~a~~~v~~~~l~~   67 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPG--PLESAIRNVKKNNLSE   67 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccC--HHHHHHHHHHhcCCcc
Confidence            345699999999999998888764  8999999987  7899999999988753

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=94.70  E-value=0.15  Score=40.00  Aligned_cols=92  Identities=18%  Similarity=0.081  Sum_probs=58.6

Q ss_pred             chHHHHHHHHHhcccCCC----CCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEE--
Q 031506           53 PCSVILAEYVWQQRYRFS----GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLM--  125 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~----~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~--  125 (158)
                      +++..+.+|+.......+    ..++||+||=+.-..+  +..+. +|+.+|+++..+-+.           ++++..  
T Consensus        30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~--s~~~~fdvt~IDLns~~~~I~-----------qqDFm~rp   96 (219)
T PF11968_consen   30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNAC--STSGWFDVTRIDLNSQHPGIL-----------QQDFMERP   96 (219)
T ss_pred             chhHHHHHHhhhhccccccccccceEEeecccCCCCcc--cccCceeeEEeecCCCCCCce-----------eeccccCC
Confidence            689999999987543222    3599999997554332  23333 799999997411110           111111  


Q ss_pred             ----cCCCCcEEE-ecCCCCCccH---HHHHHHHHHHhcC
Q 031506          126 ----TSLPPSHIC-SRVLQDQSSL---RLIIIEVGIILLS  157 (158)
Q Consensus       126 ----~d~~fD~Ii-~d~iy~~~~~---~~ll~tl~~ll~~  157 (158)
                          -+.+||+|. +-++.+.++.   -++++....+|.+
T Consensus        97 lp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~  136 (219)
T PF11968_consen   97 LPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKP  136 (219)
T ss_pred             CCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence                134899999 9999888764   4566666666543

>PRK11524 putative methyltransferase; Provisional

Probab=94.67  E-value=0.13  Score=41.48  Aligned_cols=57  Identities=19%  Similarity=0.116  Sum_probs=45.0

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE  115 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~  115 (158)
                      ..|.+.+.... ..+|..|||--||+|..++++.+.|.+.++.|+++.  .++.+++.+.
T Consensus       195 ~~L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~--Y~~~a~~Rl~  251 (284)
T PRK11524        195 EALLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSE--YIKMGLRRLD  251 (284)
T ss_pred             HHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHH--HHHHHHHHHH
Confidence            44555544322 247889999999999999999999999999999964  7787777764

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=94.60  E-value=0.16  Score=40.26  Aligned_cols=70  Identities=16%  Similarity=0.185  Sum_probs=35.9

Q ss_pred             CeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHH---HHHHHcC-C------cceEEEc---------CCCCcE
Q 031506           72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR---RVCEMNK-L------NCRLLMT---------SLPPSH  132 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~---~n~~~n~-~------~~~~~~~---------d~~fD~  132 (158)
                      .+|||.=||.|.=++++|..|++|++++-++.  +...++   ++...+. .      +..+...         +..||+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspv--ia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV  154 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPV--IAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV  154 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT--EEEEE--HH--HHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred             CEEEECCCcchHHHHHHHccCCeEEEEECCHH--HHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence            38999999999999999999999999999974  322222   2222221 1      1233332         338999


Q ss_pred             EEecCCCCCcc
Q 031506          133 ICSRVLQDQSS  143 (158)
Q Consensus       133 Ii~d~iy~~~~  143 (158)
                      |..||+|....
T Consensus       155 VY~DPMFp~~~  165 (234)
T PF04445_consen  155 VYFDPMFPERK  165 (234)
T ss_dssp             EEE--S-----
T ss_pred             EEECCCCCCcc
Confidence            99999998754

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PRK13699 putative methylase; Provisional

Probab=94.55  E-value=0.17  Score=39.65  Aligned_cols=58  Identities=12%  Similarity=0.011  Sum_probs=44.4

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM  116 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~  116 (158)
                      ..|.+.+.+.. ..++..|||--||+|..++++.+.|.+.+++|+++.  ..+.+.+.++.
T Consensus       150 ~~l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~--y~~~~~~r~~~  207 (227)
T PRK13699        150 VTSLQPLIESF-THPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQ--YHRAGQQRLAA  207 (227)
T ss_pred             HHHHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHH--HHHHHHHHHHH
Confidence            44555554422 236779999999999999999999999999999964  67766666654

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.52  E-value=0.073  Score=37.30  Aligned_cols=33  Identities=21%  Similarity=0.150  Sum_probs=28.7

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN  102 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~  102 (158)
                      +....+|||||.|++--.+.+-|..=.+.|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence            345799999999999999999999888888865

; GO: 0008168 methyltransferase activity

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=94.22  E-value=1  Score=35.50  Aligned_cols=108  Identities=18%  Similarity=0.183  Sum_probs=56.2

Q ss_pred             CCCceEecch-HHHHHHHHHhc---ccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHH-HH
Q 031506           45 EEYGLFVWPC-SVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVC-EM  116 (158)
Q Consensus        45 ~~~g~~vW~~-~~~la~~l~~~---~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~-~~  116 (158)
                      ...++|+|+. -=.|+..+...   ....++.+||=||+.+|..---++-- |  ..|.+++.++.  ....+-.-+ ++
T Consensus        44 ~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r--~~rdL~~la~~R  121 (229)
T PF01269_consen   44 KKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPR--SMRDLLNLAKKR  121 (229)
T ss_dssp             --EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHH--HHHHHHHHHHHS
T ss_pred             CccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecch--hHHHHHHHhccC
Confidence            3458899954 33456656553   23447889999999999776655542 3  38999999974  333222111 12


Q ss_pred             cCCcceEEEc-------C---CCCcEEEecCCCCCccHHHHHHHHHHHhc
Q 031506          117 NKLNCRLLMT-------S---LPPSHICSRVLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       117 n~~~~~~~~~-------d---~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~  156 (158)
                      .++ +.+..-       .   ...|+|++|+-. +...+-++......|+
T Consensus       122 ~NI-iPIl~DAr~P~~Y~~lv~~VDvI~~DVaQ-p~Qa~I~~~Na~~fLk  169 (229)
T PF01269_consen  122 PNI-IPILEDARHPEKYRMLVEMVDVIFQDVAQ-PDQARIAALNARHFLK  169 (229)
T ss_dssp             TTE-EEEES-TTSGGGGTTTS--EEEEEEE-SS-TTHHHHHHHHHHHHEE
T ss_pred             Cce-eeeeccCCChHHhhcccccccEEEecCCC-hHHHHHHHHHHHhhcc
Confidence            221 111111       0   178888888873 3444555555444443

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=94.19  E-value=0.14  Score=36.83  Aligned_cols=43  Identities=26%  Similarity=0.279  Sum_probs=29.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccC-CCHHHHHHhhcCCEEEEEecCC
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGSNVTLTDDSN  102 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~G-tGl~~i~~a~~g~~v~~tD~~~  102 (158)
                      .+|+|+.+..   +..+++|+|-| ---++..+++.|..|++||+.+
T Consensus         3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~   46 (127)
T PF03686_consen    3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINP   46 (127)
T ss_dssp             HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-
T ss_pred             hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcc
Confidence            5788887633   33499999999 4566778888999999999997

; PDB: 2K4M_A.

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=94.15  E-value=0.21  Score=35.48  Aligned_cols=81  Identities=19%  Similarity=0.199  Sum_probs=50.2

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCC-HHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-CCcEEE-
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-PPSHIC-  134 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtG-l~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-~fD~Ii-  134 (158)
                      +++|+....   ...+|+|+|.|-= -++-.++++|..|++||+++.         ++.   ..+++..-|. .+.+=+ 
T Consensus         4 ~a~~iAre~---~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---------~a~---~g~~~v~DDitnP~~~iY   68 (129)
T COG1255           4 VAEYIAREN---ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---------TAP---EGLRFVVDDITNPNISIY   68 (129)
T ss_pred             HHHHHHHHh---cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---------cCc---ccceEEEccCCCccHHHh
Confidence            456665422   2238999999833 445577889999999999973         222   2244444444 344333 


Q ss_pred             --ecCCCCCccHHHHHHHHHH
Q 031506          135 --SRVLQDQSSLRLIIIEVGI  153 (158)
Q Consensus       135 --~d~iy~~~~~~~ll~tl~~  153 (158)
                        +|.+|.....++|.+.+-.
T Consensus        69 ~~A~lIYSiRpppEl~~~ild   89 (129)
T COG1255          69 EGADLIYSIRPPPELQSAILD   89 (129)
T ss_pred             hCccceeecCCCHHHHHHHHH
Confidence              6777777666666655543

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=93.99  E-value=0.039  Score=45.30  Aligned_cols=70  Identities=20%  Similarity=0.253  Sum_probs=55.2

Q ss_pred             eEecchHHHHHHH--H-Hhcc---cCCCCCeEEEeccCCCHHHH-HHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc
Q 031506           49 LFVWPCSVILAEY--V-WQQR---YRFSGANVVELGAGTSLPGL-VAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN  120 (158)
Q Consensus        49 ~~vW~~~~~la~~--l-~~~~---~~~~~~~vLELG~GtGl~~i-~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~  120 (158)
                      .+.|+....|..+  + ++.+   ....+..|+||=||-|.+.+ .+-++|+ .|++.|.++  ..++.+++|++.|+..
T Consensus       167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp--~svEaLrR~~~~N~V~  244 (351)
T KOG1227|consen  167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNP--WSVEALRRNAEANNVM  244 (351)
T ss_pred             EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCH--HHHHHHHHHHHhcchH
Confidence            4789998888765  1 1111   12245789999999999999 7788888 899999996  4999999999999764

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=93.87  E-value=0.24  Score=42.05  Aligned_cols=45  Identities=22%  Similarity=0.251  Sum_probs=37.5

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC-C-EEEEEecCChHHHHHHHHHHHHH
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNRIEVLKNMRRVCEM  116 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g-~-~v~~tD~~~~~~~l~~~~~n~~~  116 (158)
                      .-++||=||.|-|+....+.|.- . +|+.+|+++.  |++.+++|.-.
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~--miela~~~~vl  335 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPR--MIELASHATVL  335 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHH--HHHHhhhhhHh
Confidence            34689999999999999888764 3 9999999965  99999977543

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=93.75  E-value=0.48  Score=37.47  Aligned_cols=87  Identities=20%  Similarity=0.142  Sum_probs=58.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc----------CCCCcEEEecC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT----------SLPPSHICSRV  137 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~----------d~~fD~Ii~d~  137 (158)
                      .+|.|||++|=|.|++.-.+..+.. +=+.++..+  ++++.++.+.-...-++-+...          |..||=|+-|.
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp--~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT  177 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP--DVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDT  177 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH--HHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeec
Confidence            4788999999999999987766544 556677775  4999998877655434333222          33799999776


Q ss_pred             C-CCCccHHHHHHHHHHHhcC
Q 031506          138 L-QDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       138 i-y~~~~~~~ll~tl~~ll~~  157 (158)
                      . -+-+++..+.+.+-.||++
T Consensus       178 y~e~yEdl~~~hqh~~rLLkP  198 (271)
T KOG1709|consen  178 YSELYEDLRHFHQHVVRLLKP  198 (271)
T ss_pred             hhhHHHHHHHHHHHHhhhcCC
Confidence            5 3334455555655555553

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=93.72  E-value=0.21  Score=41.31  Aligned_cols=84  Identities=17%  Similarity=0.152  Sum_probs=51.0

Q ss_pred             CCCeEEEeccCCCHHHH-HHh---h--cCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEc--C-------------
Q 031506           70 SGANVVELGAGTSLPGL-VAA---K--VGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMT--S-------------  127 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i-~~a---~--~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~--d-------------  127 (158)
                      ++..++|||||+|.=.. ++.   +  .....+.+|+|..  +++.+..++..... .+.+.+.  |             
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~--~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~  153 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRS--ELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN  153 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHH--HHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence            45589999999996533 221   2  2357999999965  89988888873222 2333211  1             


Q ss_pred             -CCCcEEE--ecCCCC--CccHHHHHHHHHH-Hh
Q 031506          128 -LPPSHIC--SRVLQD--QSSLRLIIIEVGI-IL  155 (158)
Q Consensus       128 -~~fD~Ii--~d~iy~--~~~~~~ll~tl~~-ll  155 (158)
                       ....+|+  -..|.+  ++....+++.++. .+
T Consensus       154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l  187 (319)
T TIGR03439       154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATAL  187 (319)
T ss_pred             cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhC
Confidence             1356776  345533  3445577777766 44

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.68  E-value=0.11  Score=40.02  Aligned_cols=42  Identities=19%  Similarity=0.192  Sum_probs=28.8

Q ss_pred             CCCeEEEeccCCC----HHHHHHhh-----cC--CEEEEEecCChHHHHHHHHHH
Q 031506           70 SGANVVELGAGTS----LPGLVAAK-----VG--SNVTLTDDSNRIEVLKNMRRV  113 (158)
Q Consensus        70 ~~~~vLELG~GtG----l~~i~~a~-----~g--~~v~~tD~~~~~~~l~~~~~n  113 (158)
                      +.-+|.-.||+||    .+++++..     .+  .+|++||+++.  +++.+++-
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~--~L~~Ar~G   83 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPS--ALEKARAG   83 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HH--HHHHHHHT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHH--HHHHHHhC
Confidence            4568999999999    45555554     12  38999999975  88887764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.03  E-value=0.27  Score=38.24  Aligned_cols=50  Identities=26%  Similarity=0.108  Sum_probs=38.7

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC---EEEEEecCC
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSN  102 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~  102 (158)
                      .++..|.+-..++....++.+|+||||-.|.-+-.++++..   .|+++|+.+
T Consensus        28 RAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p   80 (205)
T COG0293          28 RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP   80 (205)
T ss_pred             hHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence            36666777666664444678999999999999998887643   499999997

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=93.03  E-value=0.42  Score=38.22  Aligned_cols=55  Identities=11%  Similarity=0.121  Sum_probs=39.7

Q ss_pred             CCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ..+|+|||||.==+++.....  ++.+++.|++..  +++.+.+=+...+...++...|
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~--~ve~l~~~l~~l~~~~~~~v~D  162 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQ--LVEFLNAFLAVLGVPHDARVRD  162 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHH--HHHHHHHHHHHTT-CEEEEEE-
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHH--HHHHHHHHHHhhCCCcceeEee
Confidence            579999999998888855443  469999999975  9999888888777666655444

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=92.94  E-value=1  Score=37.11  Aligned_cols=59  Identities=7%  Similarity=-0.085  Sum_probs=43.1

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcC
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK  118 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~  118 (158)
                      |.+-+.......++..++|.=+|.|.-+..+++.  ..+|++.|.++.  +++.++++++..+
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~--Al~~ak~~L~~~~   68 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQ--AIAFAKERLSDFE   68 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHH--HHHHHHHHHhhcC
Confidence            3343443333345678999999999999977664  259999999964  9999998887543

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.75  E-value=0.73  Score=37.78  Aligned_cols=71  Identities=17%  Similarity=0.179  Sum_probs=49.0

Q ss_pred             cCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC---------------
Q 031506           67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL---------------  128 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~---------------  128 (158)
                      .+++++.||==|+|.|+   +++.+|++|++++..|++..  ..+...++++.+| .+..+..|.               
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~--~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~  110 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQ--GNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKK  110 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEecccc--chHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHH
Confidence            46688999999999994   55567899999999999985  4444444444444 454444432               


Q ss_pred             ---CCcEEE--ecCCCC
Q 031506          129 ---PPSHIC--SRVLQD  140 (158)
Q Consensus       129 ---~fD~Ii--~d~iy~  140 (158)
                         ..|+++  +-+.+.
T Consensus       111 e~G~V~ILVNNAGI~~~  127 (300)
T KOG1201|consen  111 EVGDVDILVNNAGIVTG  127 (300)
T ss_pred             hcCCceEEEeccccccC
Confidence               788888  555443

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=92.56  E-value=0.54  Score=39.57  Aligned_cols=59  Identities=19%  Similarity=0.183  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhccc---CCCCCeEEEeccCCCHHHHHHhh-c---------CCEEEEEecCChHHHHHHHHHHHH
Q 031506           55 SVILAEYVWQQRY---RFSGANVVELGAGTSLPGLVAAK-V---------GSNVTLTDDSNRIEVLKNMRRVCE  115 (158)
Q Consensus        55 ~~~la~~l~~~~~---~~~~~~vLELG~GtGl~~i~~a~-~---------g~~v~~tD~~~~~~~l~~~~~n~~  115 (158)
                      +..++.|+.+...   ......++|+|+|+|.+..-+.+ .         ..++..++.|+.  ..+.=+.+++
T Consensus        59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~--L~~~Qk~~L~  130 (370)
T COG1565          59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE--LRARQKETLK  130 (370)
T ss_pred             HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH--HHHHHHHHHh
Confidence            5667777766432   22345899999999998874332 1         358999999974  4443344444

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=91.78  E-value=0.78  Score=40.07  Aligned_cols=69  Identities=7%  Similarity=-0.053  Sum_probs=50.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc----C--CEEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEc-------------CC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV----G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMT-------------SL  128 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~----g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~-------------d~  128 (158)
                      ...+|.|-.||||.+-+.+++.    .  ..+.+.+.++.  ....++.|.-.+++..  .....             ..
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~--t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~  263 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDT--TYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKG  263 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHH--HHHHHHHHHHHhCCCccccccccccccCCcccccCCcc
Confidence            4458999999999777655432    1  36889998864  8999999999988763  21111             12


Q ss_pred             CCcEEEecCCCC
Q 031506          129 PPSHICSRVLQD  140 (158)
Q Consensus       129 ~fD~Ii~d~iy~  140 (158)
                      +||+|+++|+|.
T Consensus       264 ~~D~viaNPPf~  275 (489)
T COG0286         264 KFDFVIANPPFS  275 (489)
T ss_pred             ceeEEEeCCCCC
Confidence            699999999887

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=91.58  E-value=0.37  Score=38.61  Aligned_cols=41  Identities=15%  Similarity=0.058  Sum_probs=35.3

Q ss_pred             eEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHH
Q 031506           73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCE  115 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~  115 (158)
                      +++||-||.|.+++.+.+.|. .|.++|+++.  +.+.-+.|..
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~--a~~~y~~N~~   43 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPD--ACETYKANFP   43 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHH--HHHHHHHHHT
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHH--HHHhhhhccc
Confidence            689999999999999999997 7999999975  7888888876

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=91.52  E-value=0.22  Score=41.41  Aligned_cols=69  Identities=14%  Similarity=0.118  Sum_probs=45.0

Q ss_pred             EEEeccCCCHH-HHHHh-hcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-----------------CCCCcEEE
Q 031506           74 VVELGAGTSLP-GLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-----------------SLPPSHIC  134 (158)
Q Consensus        74 vLELG~GtGl~-~i~~a-~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-----------------d~~fD~Ii  134 (158)
                      -+|+|.|+-.+ .++-+ +.+....+||+++.  .+..+.+|+..|++.-.....                 +..||++.
T Consensus       106 GiDIgtgasci~~llg~rq~n~~f~~teidd~--s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcM  183 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDM--SFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCM  183 (419)
T ss_pred             eeeccCchhhhHHhhhchhccceeeeeecccc--ccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEe
Confidence            47887774322 22222 33558999999986  788999999999875322111                 12599999


Q ss_pred             ecCCCCCccH
Q 031506          135 SRVLQDQSSL  144 (158)
Q Consensus       135 ~d~iy~~~~~  144 (158)
                      ++|+|+....
T Consensus       184 cNPPFfe~~~  193 (419)
T KOG2912|consen  184 CNPPFFENQL  193 (419)
T ss_pred             cCCchhhchh
Confidence            7777776543

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=90.92  E-value=0.86  Score=35.95  Aligned_cols=45  Identities=13%  Similarity=0.082  Sum_probs=31.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc-C---CEEEEEecCChHHHHHHHHHHHHH
Q 031506           70 SGANVVELGAGTSLPGLVAAKV-G---SNVTLTDDSNRIEVLKNMRRVCEM  116 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~-g---~~v~~tD~~~~~~~l~~~~~n~~~  116 (158)
                      .+..+=|=.||.|.+--.+.-+ +   ..|+++|+++.  +++.+++|+.+
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~--aL~lA~kNL~L   99 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDED--ALELARKNLSL   99 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HH--HHHHHHHHHHC
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHH--HHHHHHHhhhh
Confidence            4457899999999655443332 2   38999999975  99999999854

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=90.90  E-value=0.39  Score=39.44  Aligned_cols=63  Identities=13%  Similarity=-0.047  Sum_probs=43.2

Q ss_pred             EEEeccCCCHHHHHHhhcCCE-EEEEecCChHHHHHHHHHHHHHcCCcceEEEcC---C-CCcEEE-ecCC
Q 031506           74 VVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---L-PPSHIC-SRVL  138 (158)
Q Consensus        74 vLELG~GtGl~~i~~a~~g~~-v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---~-~fD~Ii-~d~i  138 (158)
                      |+||-||.|.+++.+.+.|.+ +.+.|+++.  +.+..+.|....-...++...+   . .+|+++ .-|+
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~--a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PC   69 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKY--AQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPC   69 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHH--HHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCC
Confidence            689999999999999899986 567999965  7777777764211111222211   2 589999 6554

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=90.84  E-value=0.2  Score=40.24  Aligned_cols=44  Identities=18%  Similarity=0.344  Sum_probs=28.2

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHH
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~  112 (158)
                      ...++.++||+|||.-+.-++.|.. ..+|+++|+.+.  ..+.+++
T Consensus        53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~--N~~el~k   97 (256)
T PF01234_consen   53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQ--NREELEK   97 (256)
T ss_dssp             SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHH--HHHHHHH
T ss_pred             cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHh--hHHHHHH
Confidence            3557889999999987776655544 448999999974  4443333

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=90.67  E-value=0.42  Score=41.79  Aligned_cols=51  Identities=8%  Similarity=-0.010  Sum_probs=36.0

Q ss_pred             CCCceEecchHHHHHHHHHhcccC--C--CCCeEEEeccCCCHHHHHHhhcCCEE
Q 031506           45 EEYGLFVWPCSVILAEYVWQQRYR--F--SGANVVELGAGTSLPGLVAAKVGSNV   95 (158)
Q Consensus        45 ~~~g~~vW~~~~~la~~l~~~~~~--~--~~~~vLELG~GtGl~~i~~a~~g~~v   95 (158)
                      ++.|.+...++..-.+.|.+-...  .  .-+.+||+|||+|.+|..+..++..+
T Consensus        88 Pgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t  142 (506)
T PF03141_consen   88 PGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTT  142 (506)
T ss_pred             CCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceE
Confidence            566777677777777666654332  1  22468999999999999888887643

; GO: 0008168 methyltransferase activity

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=90.39  E-value=0.86  Score=36.00  Aligned_cols=43  Identities=14%  Similarity=0.115  Sum_probs=27.8

Q ss_pred             CCeEEEeccCCCHHHHHHhhc----------CCEEEEEecCChHHHHHHHHHHHH
Q 031506           71 GANVVELGAGTSLPGLVAAKV----------GSNVTLTDDSNRIEVLKNMRRVCE  115 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~----------g~~v~~tD~~~~~~~l~~~~~n~~  115 (158)
                      ..+|+|+|+|+|.++.-+.+.          ..+++.++.++.  +.+.-++++.
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~--L~~~Q~~~L~   71 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY--LRERQKERLS   71 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC--CHHHHHHHCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH--HHHHHHHHhh
Confidence            368999999999998843321          238999999986  4444444443

; PDB: 4F3N_A 1ZKD_B.

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=90.33  E-value=0.36  Score=37.73  Aligned_cols=47  Identities=21%  Similarity=0.109  Sum_probs=31.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCCh
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~  103 (158)
                      .|+.+|.+..+.....+++|+=||+|.+++.+.+.+..|++-|+++.
T Consensus         7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~   53 (260)
T PF02086_consen    7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPD   53 (260)
T ss_dssp             GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HH
T ss_pred             HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHH
Confidence            35667766443336789999999999999988778889999999974

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=90.16  E-value=0.93  Score=38.64  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=28.7

Q ss_pred             CCCeEEEeccCCCHHHHHHh-hcCCEEEEEecCCh
Q 031506           70 SGANVVELGAGTSLPGLVAA-KVGSNVTLTDDSNR  103 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a-~~g~~v~~tD~~~~  103 (158)
                      .-..|+|+|+|-|.++.+++ +.|..|.++|-+..
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~  187 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQR  187 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchH
Confidence            44689999999999999776 46779999999964

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=89.75  E-value=1.2  Score=37.91  Aligned_cols=65  Identities=15%  Similarity=0.120  Sum_probs=39.8

Q ss_pred             CeEEEeccC-CCHHHH-HHhhcC-CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----------CCcEEE-ec
Q 031506           72 ANVVELGAG-TSLPGL-VAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----------PPSHIC-SR  136 (158)
Q Consensus        72 ~~vLELG~G-tGl~~i-~~a~~g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----------~fD~Ii-~d  136 (158)
                      ++||=|||| .|.... .+|+.+ .+|++.|.+..  .+..+..+...   +.+....|.           .+|+|| +=
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~--~~~~i~~~~~~---~v~~~~vD~~d~~al~~li~~~d~VIn~~   76 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE--KCARIAELIGG---KVEALQVDAADVDALVALIKDFDLVINAA   76 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH--HHHHHHhhccc---cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence            478999996 444433 456667 69999999953  55555444322   344444432           679999 55


Q ss_pred             CCCCC
Q 031506          137 VLQDQ  141 (158)
Q Consensus       137 ~iy~~  141 (158)
                      |.|+.
T Consensus        77 p~~~~   81 (389)
T COG1748          77 PPFVD   81 (389)
T ss_pred             Cchhh
Confidence            54443

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=89.11  E-value=4.4  Score=32.89  Aligned_cols=81  Identities=20%  Similarity=0.226  Sum_probs=42.4

Q ss_pred             CeEEEeccC-CCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHH-HcCCc--ceEEEcC-------C-CCcEEE-e
Q 031506           72 ANVVELGAG-TSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCE-MNKLN--CRLLMTS-------L-PPSHIC-S  135 (158)
Q Consensus        72 ~~vLELG~G-tGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~-~n~~~--~~~~~~d-------~-~fD~Ii-~  135 (158)
                      ++|+=+||| .-+.++.+++.   +..|+..|+++.  +++.+++-++ ..++.  ..+...|       . .||+|+ +
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~--A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPE--ANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHH--HHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHH--HHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence            599999999 78888988764   457999999964  8888877666 22332  3333332       2 899999 6


Q ss_pred             cCCC-CCccHHHHHHHHHHH
Q 031506          136 RVLQ-DQSSLRLIIIEVGII  154 (158)
Q Consensus       136 d~iy-~~~~~~~ll~tl~~l  154 (158)
                      --+. ..+.=..++..+...
T Consensus       200 alVg~~~e~K~~Il~~l~~~  219 (276)
T PF03059_consen  200 ALVGMDAEPKEEILEHLAKH  219 (276)
T ss_dssp             TT-S----SHHHHHHHHHHH
T ss_pred             hhcccccchHHHHHHHHHhh
Confidence            6655 344445555555543

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=88.85  E-value=2.8  Score=29.85  Aligned_cols=70  Identities=13%  Similarity=0.159  Sum_probs=42.5

Q ss_pred             cCCCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------CCcEEE-ec
Q 031506           67 YRFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------PPSHIC-SR  136 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------~fD~Ii-~d  136 (158)
                      ..++++++|=+|+| +|...+ .++..|+ +|+++..+..  -.+.+.+..  .+..+.+..++.      .+|+|+ +-
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~--ra~~l~~~~--~~~~~~~~~~~~~~~~~~~~DivI~aT   83 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPE--RAEALAEEF--GGVNIEAIPLEDLEEALQEADIVINAT   83 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHH--HHHHHHHHH--TGCSEEEEEGGGHCHHHHTESEEEE-S
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHH--HHHHHHHHc--CccccceeeHHHHHHHHhhCCeEEEec
Confidence            35789999999998 343333 4566677 6999998853  333333333  222344554432      799999 65


Q ss_pred             CCCC
Q 031506          137 VLQD  140 (158)
Q Consensus       137 ~iy~  140 (158)
                      +.-.
T Consensus        84 ~~~~   87 (135)
T PF01488_consen   84 PSGM   87 (135)
T ss_dssp             STTS
T ss_pred             CCCC
Confidence            5433

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.71  E-value=2.2  Score=36.69  Aligned_cols=69  Identities=22%  Similarity=0.293  Sum_probs=43.3

Q ss_pred             cCCCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEE---EcCCCCcEEE-ec
Q 031506           67 YRFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL---MTSLPPSHIC-SR  136 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~---~~d~~fD~Ii-~d  136 (158)
                      ..+.+++|+=+|+| +|+... .++++|.+|+++|..+. +......+.++..++.+..-   .....+|+|+ +-
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~   86 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-ERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP   86 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-hhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence            34567899999998 665433 55678999999997763 33444445566556543210   0123689998 54

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=87.86  E-value=1.3  Score=37.31  Aligned_cols=88  Identities=16%  Similarity=0.194  Sum_probs=58.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHH--HcCCcceEE----Ec---CCCCcEEE-ecC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCE--MNKLNCRLL----MT---SLPPSHIC-SRV  137 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g-~~v~~tD~~~~~~~l~~~~~n~~--~n~~~~~~~----~~---d~~fD~Ii-~d~  137 (158)
                      +++.+++++|||.|-+....+..+ +.+++.|+++. +....-..+..  .+.....+.    ..   |..||.+- .|.
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~-e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~  187 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAY-EAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV  187 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhccCCccCCCcCHH-HHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence            345589999999999998777654 69999999963 22111111111  111111111    11   45899999 999


Q ss_pred             CCCCccHHHHHHHHHHHhcC
Q 031506          138 LQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ..|.++...+++.+...++.
T Consensus       188 ~~~~~~~~~~y~Ei~rv~kp  207 (364)
T KOG1269|consen  188 VCHAPDLEKVYAEIYRVLKP  207 (364)
T ss_pred             cccCCcHHHHHHHHhcccCC
Confidence            99999999999998876543

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=87.60  E-value=0.62  Score=40.73  Aligned_cols=81  Identities=21%  Similarity=0.129  Sum_probs=59.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------------CCCCcE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------------SLPPSH  132 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------------d~~fD~  132 (158)
                      ++.+|||-=|+||+-+|-.|+.  |. .|++-|.++.  .++.+++|++.|+....+...              +..||+
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~--aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv  186 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNEN--AVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV  186 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHH--HHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence            4568999999999999977774  22 8999999976  999999999999764332211              237999


Q ss_pred             EEecCCCCCcc-HHHHHHHHH
Q 031506          133 ICSRVLQDQSS-LRLIIIEVG  152 (158)
Q Consensus       133 Ii~d~iy~~~~-~~~ll~tl~  152 (158)
                      |=-||.-.... +++.++.++
T Consensus       187 IDLDPyGs~s~FLDsAvqav~  207 (525)
T KOG1253|consen  187 IDLDPYGSPSPFLDSAVQAVR  207 (525)
T ss_pred             EecCCCCCccHHHHHHHHHhh
Confidence            88888755433 455555554

>PRK08862 short chain dehydrogenase; Provisional

Probab=87.02  E-value=12  Score=28.75  Aligned_cols=48  Identities=21%  Similarity=0.329  Sum_probs=33.4

Q ss_pred             CCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC
Q 031506           69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK  118 (158)
Q Consensus        69 ~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~  118 (158)
                      ++++++|=.|++.|+   ++..+++.|++|++++.++.  .++.+.+.+...+
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~--~l~~~~~~i~~~~   53 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS--ALKDTYEQCSALT   53 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHHHHHHhcC
Confidence            467889999999886   33456778999999988764  5555444444433

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=86.48  E-value=1.9  Score=36.03  Aligned_cols=42  Identities=26%  Similarity=0.260  Sum_probs=31.6

Q ss_pred             CCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506           68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        68 ~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ..++++|+=.|+| .|..++.+|+ .|++|++.|.++.  -++.++
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~--K~e~a~  207 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE--KLELAK  207 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH--HHHHHH
Confidence            4468888888888 6677776666 8999999999975  444443

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=86.46  E-value=1.7  Score=34.86  Aligned_cols=43  Identities=23%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             HHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC-------CEEEEEecCC
Q 031506           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSN  102 (158)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g-------~~v~~tD~~~  102 (158)
                      ..|.+.....++..++|+|||.|.++-.++..-       ..++++|...
T Consensus         8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~   57 (259)
T PF05206_consen    8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS   57 (259)
T ss_pred             HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence            344443333456689999999999999776643       4889999975

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=86.00  E-value=0.44  Score=32.14  Aligned_cols=62  Identities=13%  Similarity=0.090  Sum_probs=15.3

Q ss_pred             EEeccCCCHHHHHHhhc---C--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC----------CCCcEEEecC
Q 031506           75 VELGAGTSLPGLVAAKV---G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS----------LPPSHICSRV  137 (158)
Q Consensus        75 LELG~GtGl~~i~~a~~---g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d----------~~fD~Ii~d~  137 (158)
                      ||+|+..|..++.+++.   .  .+++++|..+.   .+..+++++..++.  +++...+          .+||+|+-|-
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~---~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG---DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS---------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc---ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            79999999888765542   2  27999999872   33344444433332  3333332          3899999665


Q ss_pred             CC
Q 031506          138 LQ  139 (158)
Q Consensus       138 iy  139 (158)
                      -+
T Consensus        78 ~H   79 (106)
T PF13578_consen   78 DH   79 (106)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=85.45  E-value=1.4  Score=38.71  Aligned_cols=42  Identities=29%  Similarity=0.392  Sum_probs=33.3

Q ss_pred             CCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHHH
Q 031506           69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        69 ~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~  112 (158)
                      .++.+|+=+||| .|+.++.+++ +|++|+++|.++.  -++.+++
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~--rle~aes  206 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE--VAEQVES  206 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHH
Confidence            467899999999 8999986554 6899999999964  5665554

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=85.35  E-value=1  Score=38.11  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=50.2

Q ss_pred             ccCCCCCeEEEeccCCCHHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHHcCCc----ce-----EEEcCC----C
Q 031506           66 RYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN----CR-----LLMTSL----P  129 (158)
Q Consensus        66 ~~~~~~~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~~~~~l~~~~~n~~~n~~~----~~-----~~~~d~----~  129 (158)
                      ..+++.+++||+|+|.|....++-..-.   .+++++.++   .+...-..+..|-..    -+     ....+.    .
T Consensus       109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp---~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~  185 (484)
T COG5459         109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP---ALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADL  185 (484)
T ss_pred             CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH---HHHHHHHHHHhhcccccCCCCCCccchhccCCCccce
Confidence            3578889999999998876544433322   677777775   344443444443211    11     111122    5


Q ss_pred             CcEEE-ecCCCCCccHHHHHHHHHHH
Q 031506          130 PSHIC-SRVLQDQSSLRLIIIEVGII  154 (158)
Q Consensus       130 fD~Ii-~d~iy~~~~~~~ll~tl~~l  154 (158)
                      |++|+ .|=+-+...-.++...+..|
T Consensus       186 ytl~i~~~eLl~d~~ek~i~~~ie~l  211 (484)
T COG5459         186 YTLAIVLDELLPDGNEKPIQVNIERL  211 (484)
T ss_pred             eehhhhhhhhccccCcchHHHHHHHH
Confidence            88888 88777766666555555444

>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=84.92  E-value=1.2  Score=36.29  Aligned_cols=48  Identities=21%  Similarity=0.288  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhc-----ccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCC
Q 031506           55 SVILAEYVWQQ-----RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN  102 (158)
Q Consensus        55 ~~~la~~l~~~-----~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~  102 (158)
                      -..|-.|+...     ....+++.+.|+-+|||++|-.+.+.|..|++-|+..
T Consensus         7 K~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~   59 (330)
T COG3392           7 KYKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY   59 (330)
T ss_pred             HHHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence            34556666553     2455778899999999999999999999999999865

>PRK09242 tropinone reductase; Provisional

Probab=84.76  E-value=8.9  Score=29.55  Aligned_cols=47  Identities=17%  Similarity=0.212  Sum_probs=31.5

Q ss_pred             CCCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 031506           68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEM  116 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~  116 (158)
                      .++++++|=.|++.|+-.-   .+++.|++|++++.+..  -++....++..
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~--~~~~~~~~l~~   55 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDAD--ALAQARDELAE   55 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHh
Confidence            4577889999986553332   34567899999998753  55555555543

>PRK05867 short chain dehydrogenase; Provisional

Probab=84.46  E-value=13  Score=28.57  Aligned_cols=48  Identities=15%  Similarity=0.216  Sum_probs=32.0

Q ss_pred             CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHcC
Q 031506           69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK  118 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~  118 (158)
                      ++++++|=.|++.|+-.-   .+++.|++|++++.++.  .++.....+...+
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~   57 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLD--ALEKLADEIGTSG   57 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHHHHHHhcC
Confidence            467889999987664322   34667999999998853  4555555554433

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=83.28  E-value=17  Score=27.16  Aligned_cols=100  Identities=11%  Similarity=0.014  Sum_probs=57.7

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHH-hhcCCEEEEEecCChHHHHHHHHHH-HHHcCCcc--eE-EEcC
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVA-AKVGSNVTLTDDSNRIEVLKNMRRV-CEMNKLNC--RL-LMTS  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~-a~~g~~v~~tD~~~~~~~l~~~~~n-~~~n~~~~--~~-~~~d  127 (158)
                      +++..|++.+.+..  ..+.+|+=|||=|-...+.- ...+.++++.|++..   .+..-.+ -.....+.  .+ ....
T Consensus        10 ~T~~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R---F~~~~~~~F~fyD~~~p~~~~~~l~   84 (162)
T PF10237_consen   10 ETAEFLARELLDGA--LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR---FEQFGGDEFVFYDYNEPEELPEELK   84 (162)
T ss_pred             HHHHHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch---HHhcCCcceEECCCCChhhhhhhcC
Confidence            45677777776632  24578999988776666544 224558999999974   1111001 00000000  00 0012


Q ss_pred             CCCcEEEecCCCCCcc-HHHHHHHHHHHhcC
Q 031506          128 LPPSHICSRVLQDQSS-LRLIIIEVGIILLS  157 (158)
Q Consensus       128 ~~fD~Ii~d~iy~~~~-~~~ll~tl~~ll~~  157 (158)
                      .+||+|++||+|..+. ......|+..|+..
T Consensus        85 ~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~  115 (162)
T PF10237_consen   85 GKFDVVVIDPPFLSEECLTKTAETIRLLLKP  115 (162)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHhCc
Confidence            3899999999996443 34666788777654

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=82.24  E-value=22  Score=28.67  Aligned_cols=47  Identities=15%  Similarity=0.272  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHH-H--HHhhcCC-EEEEEecCC
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPG-L--VAAKVGS-NVTLTDDSN  102 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~-i--~~a~~g~-~v~~tD~~~  102 (158)
                      ..-+...+.......+++++|=+|+| |..- +  .+++.|+ +|++++.+.
T Consensus       110 ~~G~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        110 GLGFVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             HHHHHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            33344445443334577899999997 4322 2  2456787 599999885

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=82.12  E-value=17  Score=29.30  Aligned_cols=49  Identities=24%  Similarity=0.148  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCCh
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSNR  103 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~~  103 (158)
                      ..-+.+-+.......++++|+=+||| .|...+ .+++.|. +|+++|.+..
T Consensus       111 ~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~  162 (284)
T PRK12549        111 WSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPA  162 (284)
T ss_pred             HHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            33344444433334577899999999 333222 4556776 8999999863

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=81.79  E-value=2.9  Score=32.77  Aligned_cols=49  Identities=14%  Similarity=0.247  Sum_probs=25.4

Q ss_pred             EecchHH--HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCC
Q 031506           50 FVWPCSV--ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN  102 (158)
Q Consensus        50 ~vW~~~~--~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~  102 (158)
                      ..||-..  .+.+|+.+.   .++..|-|+|||-+.++-.+. .+.+|.-.|+-.
T Consensus        53 ~~WP~nPvd~iI~~l~~~---~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva  103 (219)
T PF05148_consen   53 KKWPVNPVDVIIEWLKKR---PKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVA  103 (219)
T ss_dssp             CTSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH---S---EEEEESS-
T ss_pred             hcCCCCcHHHHHHHHHhc---CCCEEEEECCCchHHHHHhcc-cCceEEEeeccC
Confidence            4677643  455566543   245689999999999986543 334566666653

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK06172 short chain dehydrogenase; Provisional

Probab=81.52  E-value=15  Score=28.07  Aligned_cols=56  Identities=14%  Similarity=0.151  Sum_probs=33.7

Q ss_pred             CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506           69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT  126 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~  126 (158)
                      ++++++|=.|++.|+-.-   .+++.|++|++++.++.  -++.+.+.++..+.++.+...
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~   63 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA--GGEETVALIREAGGEALFVAC   63 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence            467889999986554333   34557889999998864  344444444443333333333

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=81.25  E-value=7.6  Score=30.81  Aligned_cols=61  Identities=18%  Similarity=0.249  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN  117 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n  117 (158)
                      -.+.|.+.+... ....+..|||-=+|+|..++++.+.|...++.++++.  .++.+.+.+...
T Consensus       207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~--y~~~~~~r~~~~  267 (302)
T COG0863         207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPE--YVEVALKRLQEG  267 (302)
T ss_pred             ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHH--HHHHHHHHHHhh
Confidence            345555555554 5567889999999999999999999999999999964  777666666543

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=80.81  E-value=2.2  Score=33.55  Aligned_cols=44  Identities=9%  Similarity=0.020  Sum_probs=32.0

Q ss_pred             CCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHH
Q 031506           71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEM  116 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~  116 (158)
                      ...+.|+|||-|-+-+.++.+..  -|++.++-..  +-+..+..+.+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K--VsdYVk~RI~A  106 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK--VSDYVKERIQA  106 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHH--HHHHHHHHHHH
Confidence            34689999999999888888766  4677776654  55566665554

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=80.31  E-value=7  Score=33.54  Aligned_cols=66  Identities=14%  Similarity=0.057  Sum_probs=41.7

Q ss_pred             CCCCCeEEEeccC-CCHHH--HHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC---C-CCcEEE-ecCCC
Q 031506           68 RFSGANVVELGAG-TSLPG--LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---L-PPSHIC-SRVLQ  139 (158)
Q Consensus        68 ~~~~~~vLELG~G-tGl~~--i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---~-~fD~Ii-~d~iy  139 (158)
                      ..++++|+=+|.| +|..+  ..+.++|++|+++|....+ ..   + .++..++.... +.+   . .+|+|+ +.-+-
T Consensus         4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~-~~---~-~l~~~gi~~~~-~~~~~~~~~~d~vv~spgi~   77 (461)
T PRK00421          4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA-VT---Q-RLLELGAIIFI-GHDAENIKDADVVVYSSAIP   77 (461)
T ss_pred             cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh-HH---H-HHHHCCCEEeC-CCCHHHCCCCCEEEECCCCC
Confidence            3456778888887 88773  4788899999999998642 22   1 23434443321 221   1 699999 76553

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=80.23  E-value=4.3  Score=33.66  Aligned_cols=41  Identities=34%  Similarity=0.490  Sum_probs=31.7

Q ss_pred             CCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHHH
Q 031506           70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        70 ~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~~  112 (158)
                      .+.+|+=+||| .|++++.+++ .|+ +|+++|.++.  =++.+++
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~--Rl~~A~~  211 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE--RLELAKE  211 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH--HHHHHHH
Confidence            44489999999 8999887766 455 8999999974  5666654

>PRK06139 short chain dehydrogenase; Provisional

Probab=80.08  E-value=13  Score=30.51  Aligned_cols=56  Identities=21%  Similarity=0.307  Sum_probs=35.7

Q ss_pred             CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506           69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT  126 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~  126 (158)
                      .+++++|=.|++.|+-..   .+++.|++|++++.++.  .++.+.+.+...+..+.+...
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~--~l~~~~~~~~~~g~~~~~~~~   63 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEE--ALQAVAEECRALGAEVLVVPT   63 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEe
Confidence            456788888886553222   35667999999998864  566666666555544444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	2e-20

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 83.7 bits (206), Expect = 2e-20
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 3/115 (2%)

Query: 8   KDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEE-YGLFVWPCSVILAEYVWQQR 66
               +   +   +  + Y          S+ +    +   +   VW  +  LA+ +  Q 
Sbjct: 16  GTPPDFYRERQRSRVERYQSPAGAPLQCSVQVQTTQEHPLWTSHVWSGARALADTLCWQP 75

Query: 67  YRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120
              +G  V ELGAG  L  +VA   G   V  TD  +  E+L ++      +  N
Sbjct: 76  ELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDP-EILNSLESNIREHTAN 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.76
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.55
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.54
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.5
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.44
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.44
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.42
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.42
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.42
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.42
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.42
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.41
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.41
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.4
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.4
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.39
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.38
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.38
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.37
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.37
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.37
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.37
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.36
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.36
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.36
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.35
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.35
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.34
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.34
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.34
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.34
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.34
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.34
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.34
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.34
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.33
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.33
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.33
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.33
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.33
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.33
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.32
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.32
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.32
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.31
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.31
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.31
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.31
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.31
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.31
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.3
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.3
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.3
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.3
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.29
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.29
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.29
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.29
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.29
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.29
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.28
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.28
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.28
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.28
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.27
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.27
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.27
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.27
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.26
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.25
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.25
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.25
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.25
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.25
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.25
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.24
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.24
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.24
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.24
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.24
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.24
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.23
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.23
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.23
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.23
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.22
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.22
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.22
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.22
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.21
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.21
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.19
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.19
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.18
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.18
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.18
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.18
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.18
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.17
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.17
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.17
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.17
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.17
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.17
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.17
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.17
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.17
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.16
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.16
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.16
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.16
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.15
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.15
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.15
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.15
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.15
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.15
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.15
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.15
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.14
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.14
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.14
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.14
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.14
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.13
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.13
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.13
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.12
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.12
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.11
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.11
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.11
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.1
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.1
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.1
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.09
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.09
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.09
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.08
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.08
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.08
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.08
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.08
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.07
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.07
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.07
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.07
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.07
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.07
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.07
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.06
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.06
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.06
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.05
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.04
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.04
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.04
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.03
3ocj_A	305	Putative exported protein; structural genomics, PS	99.03
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.03
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.03
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.02
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.01
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.01
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.01
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.01
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.0
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.0
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.0
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.0
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.0
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.0
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.0
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.99
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.99
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.99
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.98
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.98
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.98
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.98
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.98
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.97
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.97
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.96
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.96
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.96
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.95
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.94
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.94
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.93
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.93
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.93
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.92
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.92
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.91
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.91
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.91
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.9
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.9
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.89
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.88
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.88
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.88
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.88
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.87
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.86
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.86
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.85
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.84
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.84
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.84
2o07_A	304	Spermidine synthase; structural genomics, structur	98.83
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.83
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.83
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.82
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.82
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.82
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.82
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.82
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.82
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.81
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.81
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.81
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.8
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.79
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.78
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.78
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.77
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.76
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.76
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.76
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.75
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.75
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.75
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.74
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.73
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.73
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.71
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.69
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.69
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.69
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.67
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.67
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.66
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.66
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.65
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.65
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.65
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.64
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.63
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.62
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.6
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.53
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.51
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.48
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.44
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.39
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.39
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.39
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.39
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.39
3lkd_A	542	Type I restriction-modification system methyltrans	98.37
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.37
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.34
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.32
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.27
3khk_A	544	Type I restriction-modification system methylation	98.25
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.25
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.23
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.21
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.2
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.2
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.18
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.15
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.13
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.98
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.95
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.92
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.8
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.8
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.69
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.6
3ufb_A	530	Type I restriction-modification system methyltran	97.59
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.45
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.36
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.09
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.06
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.93
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.8
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.49
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.42
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.15
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	95.8
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	95.73
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.72
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.55
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.51
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	95.33
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	95.25
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	95.15
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	94.87
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	94.56
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.45
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	93.89
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	93.74
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	93.6
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	92.79
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	92.43
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	92.41
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	92.04
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	91.89
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	91.63
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	91.35
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	90.54
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	90.49
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	90.41
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	89.71
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	89.56
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	89.45
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	89.22
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	89.2
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	89.16
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	89.05
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	88.52
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	88.32
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	88.25
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	88.17
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	88.13
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	87.99
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	87.98
3me5_A	482	Cytosine-specific methyltransferase; structural ge	87.89
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	87.88
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	87.84
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	87.78
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	87.75
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	87.73
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	87.7
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	87.68
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	87.03
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	87.03
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	86.71
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	86.69
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	86.5
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	86.29
3imf_A	257	Short chain dehydrogenase; structural genomics, in	86.21
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	86.08
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	85.91
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	85.9
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	85.82
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	85.8
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	85.76
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	85.76
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	85.74
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	85.42
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	85.36
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	85.31
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	85.31
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	85.16
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	84.72
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	84.42
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	84.4
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	84.29
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	84.05
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	84.04
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	84.0
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	83.94
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	83.89
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	83.65
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	83.58
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	83.42
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	83.35
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	83.29
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	83.24
3rih_A	293	Short chain dehydrogenase or reductase; structural	83.07
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	83.03
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	83.02
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	83.02
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	82.94
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	82.93
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	82.89
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	82.69
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	82.54
3cxt_A	291	Dehydrogenase with different specificities; rossma	82.41
3gms_A	340	Putative NADPH:quinone reductase; structural genom	82.4
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	82.21
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	82.17
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	82.15
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	82.11
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	81.94
4eye_A	342	Probable oxidoreductase; structural genomics, niai	81.89
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	81.8
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	81.79
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	81.74
1xkq_A	280	Short-chain reductase family member (5D234); parra	81.65
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	81.6
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	81.58
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	81.37
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	81.36
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	81.06
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	81.04
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	81.01
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	80.79
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	80.69
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	80.54
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	80.46
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	80.46
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	80.35
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	80.31
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	80.15

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.76  E-value=1.1e-17  Score=132.98  Aligned_cols=110  Identities=21%  Similarity=0.251  Sum_probs=85.6

Q ss_pred             CCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEec-CChHHHHHHHHHHHH-----Hc
Q 031506           45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDD-SNRIEVLKNMRRVCE-----MN  117 (158)
Q Consensus        45 ~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~-~~~~~~l~~~~~n~~-----~n  117 (158)
                      .-+|..+||++..|++|+.......++++|||||||+|.+++.+++.|+ +|+++|+ ++.  +++.+++|+.     .+
T Consensus        54 ~~~g~~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~--~~~~a~~n~~~N~~~~~  131 (281)
T 3bzb_A           54 PLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPE--ILNSLESNIREHTANSC  131 (281)
T ss_dssp             --------CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHH--HHHHHHHHHHTTCC---
T ss_pred             CCCCceeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHH--HHHHHHHHHHHhhhhhc
Confidence            4578899999999999999876667888999999999999999999887 9999999 754  9999999994     44


Q ss_pred             CC------cceEEEc--------------CCCCcEEE-ecCCCCCccHHHHHHHHHHHhc
Q 031506          118 KL------NCRLLMT--------------SLPPSHIC-SRVLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       118 ~~------~~~~~~~--------------d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~  156 (158)
                      ++      ++.+...              +.+||+|+ +|++|+.+..+.+++++..+|.
T Consensus       132 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk  191 (281)
T 3bzb_A          132 SSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLA  191 (281)
T ss_dssp             -------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBC
T ss_pred             ccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhc
Confidence            43      2444432              23799999 9999999999999999999887

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.55  E-value=2.2e-14  Score=106.72  Aligned_cols=105  Identities=19%  Similarity=0.226  Sum_probs=78.4

Q ss_pred             ecchHHHHHHHHHhccc---CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCC-cceEEE
Q 031506           51 VWPCSVILAEYVWQQRY---RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLM  125 (158)
Q Consensus        51 vW~~~~~la~~l~~~~~---~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~  125 (158)
                      .+|....+.+.+.....   ..++.+|||+|||+|.+++.+++.+. +|+++|+++.  +++.+++|++.+++ ++.+..
T Consensus        22 ~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~v~~~~   99 (189)
T 3p9n_A           22 TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQR--SAAVIARNIEALGLSGATLRR   99 (189)
T ss_dssp             C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHH--HHHHHHHHHHHHTCSCEEEEE
T ss_pred             CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHH--HHHHHHHHHHHcCCCceEEEE
Confidence            35666666555544221   25788999999999999997777776 8999999965  99999999999886 355554


Q ss_pred             cC----------CCCcEEEecCCCCC--ccHHHHHHHHHH--HhcC
Q 031506          126 TS----------LPPSHICSRVLQDQ--SSLRLIIIEVGI--ILLS  157 (158)
Q Consensus       126 ~d----------~~fD~Ii~d~iy~~--~~~~~ll~tl~~--ll~~  157 (158)
                      .|          .+||+|++|++|+.  +...++++.+..  +|.+
T Consensus       100 ~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~p  145 (189)
T 3p9n_A          100 GAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTRE  145 (189)
T ss_dssp             SCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCT
T ss_pred             ccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCC
Confidence            43          38999998888887  678888888877  6654

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.54  E-value=3.8e-14  Score=110.77  Aligned_cols=113  Identities=13%  Similarity=0.162  Sum_probs=85.5

Q ss_pred             EEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHH
Q 031506           37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCE  115 (158)
Q Consensus        37 ~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~  115 (158)
                      +++.|.   ..+++....+..|+.|+...   +++.+|||+|||+|.+++.+++++. +|+++|+++.  +++.+++|+.
T Consensus        22 ~~i~q~---~~~~~~~~d~~ll~~~~~~~---~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~--~~~~a~~n~~   93 (259)
T 3lpm_A           22 LRIIQS---PSVFSFSIDAVLLAKFSYLP---IRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQER--LADMAKRSVA   93 (259)
T ss_dssp             EEEEEB---TTTBCCCHHHHHHHHHCCCC---SSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHH--HHHHHHHHHH
T ss_pred             EEEEeC---CCCccCcHHHHHHHHHhcCC---CCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHH--HHHHHHHHHH
Confidence            566663   45677777888888886321   1577999999999999999998876 9999999965  9999999999


Q ss_pred             HcCCc--ceEEEcC----------CCCcEEEecCCCCCc---------------------cHHHHHHHHHHHhcC
Q 031506          116 MNKLN--CRLLMTS----------LPPSHICSRVLQDQS---------------------SLRLIIIEVGIILLS  157 (158)
Q Consensus       116 ~n~~~--~~~~~~d----------~~fD~Ii~d~iy~~~---------------------~~~~ll~tl~~ll~~  157 (158)
                      .+++.  +.+...|          .+||+|++||+|+..                     .++.+++.+..+|.+
T Consensus        94 ~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp  168 (259)
T 3lpm_A           94 YNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ  168 (259)
T ss_dssp             HTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEE
T ss_pred             HCCCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC
Confidence            99875  4554443          279999988888654                     345677777777654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.50  E-value=3.9e-13  Score=111.50  Aligned_cols=105  Identities=21%  Similarity=0.226  Sum_probs=85.1

Q ss_pred             ecchHHHHHHHHHhcc--cCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC
Q 031506           51 VWPCSVILAEYVWQQR--YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL  128 (158)
Q Consensus        51 vW~~~~~la~~l~~~~--~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~  128 (158)
                      ..+++..+.+++....  ...++.+|||+|||+|.+++.+++.+.+|+++|+++.  +++.+++|+..|++.+++...|.
T Consensus       212 ~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~--al~~A~~n~~~~~~~v~~~~~D~  289 (381)
T 3dmg_A          212 VDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLA--SVLSLQKGLEANALKAQALHSDV  289 (381)
T ss_dssp             CCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHH--HHHHHHHHHHHTTCCCEEEECST
T ss_pred             CCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHHcCCCeEEEEcch
Confidence            4578888888886643  2446789999999999999999999999999999965  99999999999988877766543


Q ss_pred             --------CCcEEEecCCCCC------ccHHHHHHHHHHHhcC
Q 031506          129 --------PPSHICSRVLQDQ------SSLRLIIIEVGIILLS  157 (158)
Q Consensus       129 --------~fD~Ii~d~iy~~------~~~~~ll~tl~~ll~~  157 (158)
                              +||+|+++++|+.      .....+++.+..+|.+
T Consensus       290 ~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lkp  332 (381)
T 3dmg_A          290 DEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRP  332 (381)
T ss_dssp             TTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEE
T ss_pred             hhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCc
Confidence                    7999997766664      5567788888777654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.44  E-value=4.9e-13  Score=101.92  Aligned_cols=73  Identities=27%  Similarity=0.296  Sum_probs=61.3

Q ss_pred             CCCCeEEEeccC-CCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC---------CCCcEEEecC
Q 031506           69 FSGANVVELGAG-TSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---------LPPSHICSRV  137 (158)
Q Consensus        69 ~~~~~vLELG~G-tGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---------~~fD~Ii~d~  137 (158)
                      .++.+|||+||| +|.+++.+++. +.+|+++|+++.  +++.+++|+..+++++++...|         .+||+|++++
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np  131 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEE--FFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP  131 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHH--HHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence            367899999999 99999999888 789999999965  9999999999998877777665         2799999888


Q ss_pred             CCCCcc
Q 031506          138 LQDQSS  143 (158)
Q Consensus       138 iy~~~~  143 (158)
                      +|+...
T Consensus       132 p~~~~~  137 (230)
T 3evz_A          132 PYYDKP  137 (230)
T ss_dssp             CCC---
T ss_pred             CCcCCc
Confidence            886543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.44  E-value=1.7e-13  Score=100.51  Aligned_cols=99  Identities=16%  Similarity=0.131  Sum_probs=72.5

Q ss_pred             cchHHHHHHHHHhccc-CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC
Q 031506           52 WPCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS  127 (158)
Q Consensus        52 W~~~~~la~~l~~~~~-~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d  127 (158)
                      .|....+.+.+..... ..++.+|||+|||+|..++.+++.+. +|+++|+++.  +++.+++|++.+++.  +.+...|
T Consensus        12 rp~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~~~~~~~d   89 (177)
T 2esr_A           12 RPTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRK--AQAIIQDNIIMTKAENRFTLLKME   89 (177)
T ss_dssp             ------CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHH--HHHHHHHHHHTTTCGGGEEEECSC
T ss_pred             CcCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHH--HHHHHHHHHHHcCCCCceEEEECc
Confidence            3555556665554333 45678999999999999998888864 9999999965  999999999988765  4454443


Q ss_pred             ---------CCCcEEEecCCCCCccHHHHHHHHH
Q 031506          128 ---------LPPSHICSRVLQDQSSLRLIIIEVG  152 (158)
Q Consensus       128 ---------~~fD~Ii~d~iy~~~~~~~ll~tl~  152 (158)
                               .+||+|+++++|+....+.+++.+.
T Consensus        90 ~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~  123 (177)
T 2esr_A           90 AERAIDCLTGRFDLVFLDPPYAKETIVATIEALA  123 (177)
T ss_dssp             HHHHHHHBCSCEEEEEECCSSHHHHHHHHHHHHH
T ss_pred             HHHhHHhhcCCCCEEEECCCCCcchHHHHHHHHH
Confidence                     2799999888887666777777765

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.42  E-value=1.9e-13  Score=103.21  Aligned_cols=81  Identities=14%  Similarity=0.069  Sum_probs=66.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCC---cceEEEcC----------CC-CcEEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL---NCRLLMTS----------LP-PSHIC  134 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~~d----------~~-fD~Ii  134 (158)
                      ++.+|||+|||+|.+++.+++.+. +|+++|+++.  |++.+++|++.+++   ++.+...|          .+ ||+|+
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  130 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKT--VANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF  130 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHH--HHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHH--HHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence            578999999999999998777775 9999999965  99999999999886   45555432          25 99999


Q ss_pred             ecCCCCCccHHHHHHHHH
Q 031506          135 SRVLQDQSSLRLIIIEVG  152 (158)
Q Consensus       135 ~d~iy~~~~~~~ll~tl~  152 (158)
                      +|++|+....+.+++.+.
T Consensus       131 ~~~~~~~~~~~~~l~~~~  148 (201)
T 2ift_A          131 LDPPFHFNLAEQAISLLC  148 (201)
T ss_dssp             ECCCSSSCHHHHHHHHHH
T ss_pred             ECCCCCCccHHHHHHHHH
Confidence            888888888888888774

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.42  E-value=2.6e-13  Score=98.30  Aligned_cols=99  Identities=16%  Similarity=0.176  Sum_probs=75.7

Q ss_pred             ecchHHHHHHHHHhccc-CC-CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC
Q 031506           51 VWPCSVILAEYVWQQRY-RF-SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL  128 (158)
Q Consensus        51 vW~~~~~la~~l~~~~~-~~-~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~  128 (158)
                      ..|....+.+.+..... .+ ++.+|||+|||+|..++.+++.+.+|+++|+++.  +++.+++|+..+++++.+...|.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~~~~~d~   97 (171)
T 1ws6_A           20 ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPE--AVRLLKENVRRTGLGARVVALPV   97 (171)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHH--HHHHHHHHHHHHTCCCEEECSCH
T ss_pred             CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHHHHcCCceEEEeccH
Confidence            34555555555544322 13 6789999999999999999999999999999965  99999999998877666554431


Q ss_pred             ------------CCcEEEecCCCCCccHHHHHHHHH
Q 031506          129 ------------PPSHICSRVLQDQSSLRLIIIEVG  152 (158)
Q Consensus       129 ------------~fD~Ii~d~iy~~~~~~~ll~tl~  152 (158)
                                  +||+|+++++|+ ...+++++.+.
T Consensus        98 ~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~  132 (171)
T 1ws6_A           98 EVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL  132 (171)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred             HHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence                        599999888887 77777777776

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.42  E-value=6e-13  Score=100.52  Aligned_cols=82  Identities=18%  Similarity=0.113  Sum_probs=68.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcC---------CCCcEEEecCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTS---------LPPSHICSRVL  138 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d---------~~fD~Ii~d~i  138 (158)
                      ++.+|||+|||+|.+++.+++.+. +|+++|+++.  |++.+++|++.+++ ++.+...|         .+||+|++|++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~--~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p  131 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRA--VSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP  131 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHH--HHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHH--HHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence            678999999999999998777775 9999999965  99999999999886 45555443         27999998888


Q ss_pred             CCCccHHHHHHHHHH
Q 031506          139 QDQSSLRLIIIEVGI  153 (158)
Q Consensus       139 y~~~~~~~ll~tl~~  153 (158)
                      |+....+.+++.+..
T Consensus       132 ~~~~~~~~~l~~l~~  146 (202)
T 2fpo_A          132 FRRGLLEETINLLED  146 (202)
T ss_dssp             SSTTTHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHh
Confidence            888888888888765

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.42  E-value=9.7e-13  Score=102.92  Aligned_cols=116  Identities=17%  Similarity=0.185  Sum_probs=84.2

Q ss_pred             ceEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 031506           34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV  113 (158)
Q Consensus        34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n  113 (158)
                      .+.+.+.+.+..++|  .++.+....+++...  ..++.+|||+|||+|.+++.+++.|++|+++|+++.  +++.+++|
T Consensus        88 ~~~~~l~p~~~fgtg--~~~tt~~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~--~v~~a~~n  161 (254)
T 2nxc_A           88 EIPLVIEPGMAFGTG--HHETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPM--VLPQAEAN  161 (254)
T ss_dssp             SEEEECCCC-----C--CSHHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGG--GHHHHHHH
T ss_pred             ceEEEECCCccccCC--CCHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHH--HHHHHHHH
Confidence            345555554444444  457777777777654  246789999999999999999999999999999986  99999999


Q ss_pred             HHHcCCcceEEEcC-------CCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          114 CEMNKLNCRLLMTS-------LPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       114 ~~~n~~~~~~~~~d-------~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +..|++.+++...|       .+||+|+++++.+  .+..++..+..+|.+
T Consensus       162 ~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~--~~~~~l~~~~~~Lkp  210 (254)
T 2nxc_A          162 AKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE--LHAALAPRYREALVP  210 (254)
T ss_dssp             HHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH--HHHHHHHHHHHHEEE
T ss_pred             HHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH--HHHHHHHHHHHHcCC
Confidence            99998765555443       3799999665443  356777777776653

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.42  E-value=2e-12  Score=105.30  Aligned_cols=86  Identities=22%  Similarity=0.164  Sum_probs=69.5

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEcC------------CCCcEEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMTS------------LPPSHIC  134 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~d------------~~fD~Ii  134 (158)
                      ++.+|||+|||+|.+++.+++.|++|+++|+++.  +++.+++|++.|++.   +++...|            .+||+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~--al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKK--AIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHH--HHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            5679999999999999999999999999999965  999999999999875   4454433            2799999


Q ss_pred             ecCCCCCc-----------cHHHHHHHHHHHhcC
Q 031506          135 SRVLQDQS-----------SLRLIIIEVGIILLS  157 (158)
Q Consensus       135 ~d~iy~~~-----------~~~~ll~tl~~ll~~  157 (158)
                      +||+|+..           .+..+++.+..+|.+
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp  264 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP  264 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99987542           356777777766654

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.41  E-value=6.9e-13  Score=109.96  Aligned_cols=94  Identities=21%  Similarity=0.283  Sum_probs=74.1

Q ss_pred             HHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcC-------CCC
Q 031506           61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTS-------LPP  130 (158)
Q Consensus        61 ~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d-------~~f  130 (158)
                      .|.++...+++++|||+|||||++++++|+.|+ +|+++|.++   |++.++++++.|++..  .+...+       .+|
T Consensus        74 Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~---~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~  150 (376)
T 4hc4_A           74 GILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA---IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQV  150 (376)
T ss_dssp             HHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST---THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred             HHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH---HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccc
Confidence            355555567899999999999999999999998 899999985   7899999999999864  444332       289


Q ss_pred             cEEEecCC----CCCccHHHHHHHHHHHhcC
Q 031506          131 SHICSRVL----QDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       131 D~Ii~d~i----y~~~~~~~ll~tl~~ll~~  157 (158)
                      |+|+++++    .+...++.++.....+|.+
T Consensus       151 DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp  181 (376)
T 4hc4_A          151 DAIVSEWMGYGLLHESMLSSVLHARTKWLKE  181 (376)
T ss_dssp             EEEECCCCBTTBTTTCSHHHHHHHHHHHEEE
T ss_pred             cEEEeecccccccccchhhhHHHHHHhhCCC
Confidence            99997554    5566777887777777654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.41  E-value=4.8e-12  Score=92.89  Aligned_cols=87  Identities=22%  Similarity=0.284  Sum_probs=71.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEcCC-------CCcEEEecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMTSL-------PPSHICSRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~d~-------~fD~Ii~d~i  138 (158)
                      .++.+|||+|||+|..++.+++.+.+|+++|+++.  +++.+++|+..+++.   +.+...|.       +||+|+++++
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~--~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  128 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADEVKSTTMADINRR--AIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPP  128 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHH--HHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHH--HHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEEECCC
Confidence            36789999999999999998888889999999965  999999999988765   56655543       7999996666


Q ss_pred             CCC--ccHHHHHHHHHHHhcC
Q 031506          139 QDQ--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       139 y~~--~~~~~ll~tl~~ll~~  157 (158)
                      |+.  .....+++.+..+|.+
T Consensus       129 ~~~~~~~~~~~l~~~~~~L~~  149 (194)
T 1dus_A          129 IRAGKEVLHRIIEEGKELLKD  149 (194)
T ss_dssp             STTCHHHHHHHHHHHHHHEEE
T ss_pred             cccchhHHHHHHHHHHHHcCC
Confidence            664  5677888888877654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.40  E-value=1.5e-12  Score=101.48  Aligned_cols=103  Identities=15%  Similarity=0.094  Sum_probs=82.6

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhh-cCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--  127 (158)
                      ++...+.+.+.+.....++.+|||+|||+|..+..+++ .+.+|+++|+++.  +++.+++++..+++.  +.+...|  
T Consensus        44 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~~~~~~~d~~  121 (273)
T 3bus_A           44 DATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRP--QVNQANARATAAGLANRVTFSYADAM  121 (273)
T ss_dssp             HHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHH--HHHHHHHHHHhcCCCcceEEEECccc
Confidence            34556666666655455778999999999999998876 4789999999965  999999999887764  4554443  


Q ss_pred             ------CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 ------LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 ------~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                            .+||+|+ .+++++.++...+++.+..+|.+
T Consensus       122 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p  158 (273)
T 3bus_A          122 DLPFEDASFDAVWALESLHHMPDRGRALREMARVLRP  158 (273)
T ss_dssp             SCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEE
T ss_pred             cCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCC
Confidence                  2799999 99999999999999999888764

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.40  E-value=6.7e-13  Score=97.57  Aligned_cols=97  Identities=12%  Similarity=0.110  Sum_probs=75.5

Q ss_pred             chHHHHHHHHHhcc-cCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-
Q 031506           53 PCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~-~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-  127 (158)
                      |....+.+.+.... ...++.+|||+|||+|..++.+++.+. +|+++|+++.  +++.+++|+..+++.  +.+...| 
T Consensus        26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~~~~~~~d~  103 (187)
T 2fhp_A           26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFA--ALKVIKENIAITKEPEKFEVRKMDA  103 (187)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHH--HHHHHHHHHHHhCCCcceEEEECcH
Confidence            55666666665543 234678999999999999998777774 9999999965  999999999988763  4554432 


Q ss_pred             -----------CCCcEEEecCCCCCccHHHHHHHH
Q 031506          128 -----------LPPSHICSRVLQDQSSLRLIIIEV  151 (158)
Q Consensus       128 -----------~~fD~Ii~d~iy~~~~~~~ll~tl  151 (158)
                                 .+||+|+++++|+....+..++.+
T Consensus       104 ~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l  138 (187)
T 2fhp_A          104 NRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM  138 (187)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence                       379999988888877788888777

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.39  E-value=4.8e-12  Score=104.62  Aligned_cols=100  Identities=15%  Similarity=0.146  Sum_probs=72.6

Q ss_pred             cchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc----ceEEE
Q 031506           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN----CRLLM  125 (158)
Q Consensus        52 W~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~----~~~~~  125 (158)
                      ..++..+.+++    ....+.+|||+|||+|.+++.+++.  +.+|+++|+++.  +++.+++|+..|++.    +++..
T Consensus       208 d~~~~~ll~~l----~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~--al~~Ar~n~~~ngl~~~~~v~~~~  281 (375)
T 4dcm_A          208 DIGARFFMQHL----PENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPM--AVASSRLNVETNMPEALDRCEFMI  281 (375)
T ss_dssp             CHHHHHHHHTC----CCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHH--HHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred             cHHHHHHHHhC----cccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHH--HHHHHHHHHHHcCCCcCceEEEEe
Confidence            34444444433    3345579999999999999999988  569999999965  999999999999864    44454


Q ss_pred             cCC-------CCcEEEecCCCCC------ccHHHHHHHHHHHhcC
Q 031506          126 TSL-------PPSHICSRVLQDQ------SSLRLIIIEVGIILLS  157 (158)
Q Consensus       126 ~d~-------~fD~Ii~d~iy~~------~~~~~ll~tl~~ll~~  157 (158)
                      .|.       +||+|+++++|+.      .....+++.+..+|.+
T Consensus       282 ~D~~~~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp  326 (375)
T 4dcm_A          282 NNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI  326 (375)
T ss_dssp             CSTTTTCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEE
T ss_pred             chhhccCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC
Confidence            443       7999997777763      2334677777776654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.38  E-value=1.2e-12  Score=100.88  Aligned_cols=100  Identities=12%  Similarity=-0.049  Sum_probs=79.0

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-----
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-----  127 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-----  127 (158)
                      ....+++.......++.+|||+|||+|..+..+++. +.+|+++|+++.  +++.+++|++.+++.  +.+...|     
T Consensus        22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~~v~~~~~d~~~~~   99 (256)
T 1nkv_A           22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSL--FTAQAKRRAEELGVSERVHFIHNDAAGYV   99 (256)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEESCCTTCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHH--HHHHHHHHHHhcCCCcceEEEECChHhCC
Confidence            344455554444457789999999999999988765 779999999965  999999999987764  5555443     


Q ss_pred             --CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 --LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 --~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                        .+||+|+ ..++++......+++.+..+|.+
T Consensus       100 ~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkp  132 (256)
T 1nkv_A          100 ANEKCDVAACVGATWIAGGFAGAEELLAQSLKP  132 (256)
T ss_dssp             CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEE
T ss_pred             cCCCCCEEEECCChHhcCCHHHHHHHHHHHcCC
Confidence              2699999 99999998889999998877754

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.38  E-value=2.7e-12  Score=97.11  Aligned_cols=103  Identities=17%  Similarity=0.085  Sum_probs=79.3

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCC------cceEE
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL------NCRLL  124 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~------~~~~~  124 (158)
                      +-.....+++.+.....++.+|||+|||+|..+..+++.+  .+|+++|+++.  +++.+++++..+++      ++.+.
T Consensus        12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~~~~~v~~~   89 (219)
T 3jwg_A           12 NLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYS--VLERAKDRLKIDRLPEMQRKRISLF   89 (219)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHH--HHHHHHHHHTGGGSCHHHHTTEEEE
T ss_pred             cchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHH--HHHHHHHHHHhhccccccCcceEEE
Confidence            4444455555554334567899999999999999999877  59999999965  99999999887664      34555


Q ss_pred             EcCC--------CCcEEE-ecCCCCCcc--HHHHHHHHHHHhcC
Q 031506          125 MTSL--------PPSHIC-SRVLQDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       125 ~~d~--------~fD~Ii-~d~iy~~~~--~~~ll~tl~~ll~~  157 (158)
                      ..|.        +||+|+ .+++++...  ...+++.+..+|.+
T Consensus        90 ~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp  133 (219)
T 3jwg_A           90 QSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP  133 (219)
T ss_dssp             ECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC
T ss_pred             eCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCC
Confidence            4433        799999 999998874  47889988888765

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.37  E-value=4.6e-12  Score=95.73  Aligned_cols=99  Identities=14%  Similarity=0.140  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------  128 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------  128 (158)
                      ...+.+.+.+...  ++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.+++|...++.++.+...|.      
T Consensus        25 ~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~d~~~~~~~  100 (227)
T 1ve3_A           25 IETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISED--MIRKAREYAKSRESNVEFIVGDARKLSFE  100 (227)
T ss_dssp             HHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCCEEEECCTTSCCSC
T ss_pred             HHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHhcCCCceEEECchhcCCCC
Confidence            3444555554332  3779999999999999999999899999999964  99999999988775666665542      


Q ss_pred             --CCcEEE-ecC--CCCCccHHHHHHHHHHHhcC
Q 031506          129 --PPSHIC-SRV--LQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       129 --~fD~Ii-~d~--iy~~~~~~~ll~tl~~ll~~  157 (158)
                        +||+|+ .++  .++......+++.+..+|.+
T Consensus       101 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~  134 (227)
T 1ve3_A          101 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKP  134 (227)
T ss_dssp             TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEE
T ss_pred             CCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCC
Confidence              699999 888  66667788899998888764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.37  E-value=1.5e-12  Score=100.51  Aligned_cols=104  Identities=8%  Similarity=-0.005  Sum_probs=83.5

Q ss_pred             ecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--
Q 031506           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--  127 (158)
Q Consensus        51 vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--  127 (158)
                      .++.+..+.+.+.......++.+|||+|||+|..+..+++. +.+|+++|+++.  +++.++++...+ .++.+...|  
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~--~~~~a~~~~~~~-~~~~~~~~d~~  112 (266)
T 3ujc_A           36 ISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSN--IVNMANERVSGN-NKIIFEANDIL  112 (266)
T ss_dssp             CSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH--HHHHHHHTCCSC-TTEEEEECCTT
T ss_pred             cccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHhhcC-CCeEEEECccc
Confidence            45667777777777655557889999999999999988886 889999999965  999998877654 334444443  


Q ss_pred             ------CCCcEEE-ecCCCCC--ccHHHHHHHHHHHhcC
Q 031506          128 ------LPPSHIC-SRVLQDQ--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 ------~~fD~Ii-~d~iy~~--~~~~~ll~tl~~ll~~  157 (158)
                            .+||+|+ .+++++.  +....+++.+..+|.+
T Consensus       113 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~p  151 (266)
T 3ujc_A          113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKP  151 (266)
T ss_dssp             TCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred             cCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCC
Confidence                  2799999 9999999  8899999999988764

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.37  E-value=2e-12  Score=102.28  Aligned_cols=94  Identities=18%  Similarity=0.134  Sum_probs=71.2

Q ss_pred             HHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCc
Q 031506           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPS  131 (158)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD  131 (158)
                      +.+.......++.+|||+|||+|..++.++++|++|+++|+++.  |++.+++|+..+....++...        +.+||
T Consensus        35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~--ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD  112 (261)
T 3iv6_A           35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQR--MCDDLAEALADRCVTIDLLDITAEIPKELAGHFD  112 (261)
T ss_dssp             HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCS
T ss_pred             HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHHhccceeeeeecccccccccCCCcc
Confidence            33444334456789999999999999999999999999999965  999999998766444443322        23899


Q ss_pred             EEE-ecCCCC--CccHHHHHHHHHHHh
Q 031506          132 HIC-SRVLQD--QSSLRLIIIEVGIIL  155 (158)
Q Consensus       132 ~Ii-~d~iy~--~~~~~~ll~tl~~ll  155 (158)
                      +|+ +.++.+  .+....+++.+..+|
T Consensus       113 ~Vv~~~~l~~~~~~~~~~~l~~l~~lL  139 (261)
T 3iv6_A          113 FVLNDRLINRFTTEEARRACLGMLSLV  139 (261)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHH
T ss_pred             EEEEhhhhHhCCHHHHHHHHHHHHHhC
Confidence            999 667654  345677888888776

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.37  E-value=1.3e-12  Score=98.55  Aligned_cols=103  Identities=13%  Similarity=-0.041  Sum_probs=78.6

Q ss_pred             cchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC---
Q 031506           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL---  128 (158)
Q Consensus        52 W~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~---  128 (158)
                      |-....+..++.......++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.+++++..++ ++.+...|.   
T Consensus        33 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~~~~-~~~~~~~d~~~~  109 (216)
T 3ofk_A           33 PFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPR--AIGRACQRTKRWS-HISWAATDILQF  109 (216)
T ss_dssp             HHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHH--HHHHHHHHTTTCS-SEEEEECCTTTC
T ss_pred             HhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHH--HHHHHHHhcccCC-CeEEEEcchhhC
Confidence            4444455666654444456789999999999999999999899999999965  9999999887654 455555443   


Q ss_pred             ----CCcEEE-ecCCCCCccHH---HHHHHHHHHhcC
Q 031506          129 ----PPSHIC-SRVLQDQSSLR---LIIIEVGIILLS  157 (158)
Q Consensus       129 ----~fD~Ii-~d~iy~~~~~~---~ll~tl~~ll~~  157 (158)
                          +||+|+ +.++++..+.+   .+++.+..+|.+
T Consensus       110 ~~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~p  146 (216)
T 3ofk_A          110 STAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAP  146 (216)
T ss_dssp             CCSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEE
T ss_pred             CCCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCC
Confidence                799999 99999888764   557777776653

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.36  E-value=4.1e-12  Score=96.07  Aligned_cols=98  Identities=16%  Similarity=0.058  Sum_probs=76.0

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc------ceEEEcCC-
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN------CRLLMTSL-  128 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~------~~~~~~d~-  128 (158)
                      ..+++.......++.+|||+|||+|..+..+++.+  .+|+++|+++.  +++.+++|+..+++.      +.+...|. 
T Consensus        17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~   94 (217)
T 3jwh_A           17 RMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYR--SLEIAQERLDRLRLPRNQWERLQLIQGALT   94 (217)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHH--HHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHH--HHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence            34444443333467899999999999999999876  49999999965  999999999877653      45555443 


Q ss_pred             -------CCcEEE-ecCCCCCc--cHHHHHHHHHHHhcC
Q 031506          129 -------PPSHIC-SRVLQDQS--SLRLIIIEVGIILLS  157 (158)
Q Consensus       129 -------~fD~Ii-~d~iy~~~--~~~~ll~tl~~ll~~  157 (158)
                             +||+|+ .+++++..  ....+++.+..+|.+
T Consensus        95 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp  133 (217)
T 3jwh_A           95 YQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQP  133 (217)
T ss_dssp             SCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC
T ss_pred             cccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCC
Confidence                   799999 99999877  448889988887765

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.36  E-value=3.7e-12  Score=94.32  Aligned_cols=87  Identities=18%  Similarity=0.197  Sum_probs=72.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcC-------CCCcEEE-ecCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTS-------LPPSHIC-SRVLQ  139 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d-------~~fD~Ii-~d~iy  139 (158)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.+++++..++. .+.+...|       .+||+|+ ..+++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~  108 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAM--SIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLM  108 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEESCGG
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHH--HHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEcchhh
Confidence            46679999999999999999988999999999965  99999999987765 45554443       3799999 88888


Q ss_pred             CCc--cHHHHHHHHHHHhcC
Q 031506          140 DQS--SLRLIIIEVGIILLS  157 (158)
Q Consensus       140 ~~~--~~~~ll~tl~~ll~~  157 (158)
                      +..  ....+++.+..+|.+
T Consensus       109 ~~~~~~~~~~l~~~~~~L~~  128 (199)
T 2xvm_A          109 FLEAKTIPGLIANMQRCTKP  128 (199)
T ss_dssp             GSCGGGHHHHHHHHHHTEEE
T ss_pred             hCCHHHHHHHHHHHHHhcCC
Confidence            776  788899998887764

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.36  E-value=5.1e-12  Score=97.18  Aligned_cols=101  Identities=13%  Similarity=0.096  Sum_probs=82.3

Q ss_pred             ecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC--
Q 031506           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS--  127 (158)
Q Consensus        51 vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d--  127 (158)
                      .||.+..+.+.+.    ..++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.+++++..+++. +.+...|  
T Consensus         6 ~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~v~~~~~d~~   79 (239)
T 1xxl_A            6 HHHSLGLMIKTAE----CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKE--MVEVASSFAQEKGVENVRFQQGTAE   79 (239)
T ss_dssp             CHHHHHHHHHHHT----CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHH--HHHHHHHHHHHHTCCSEEEEECBTT
T ss_pred             cCCCcchHHHHhC----cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHH--HHHHHHHHHHHcCCCCeEEEecccc
Confidence            4677666666553    336789999999999999999999899999999965  999999999877653 4554443  


Q ss_pred             ------CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 ------LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 ------~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                            .+||+|+ ..++++..+...+++.+..+|.+
T Consensus        80 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp  116 (239)
T 1xxl_A           80 SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQ  116 (239)
T ss_dssp             BCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE
T ss_pred             cCCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCC
Confidence                  2799999 88999999999999999988764

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.35  E-value=5.5e-12  Score=97.81  Aligned_cols=87  Identities=14%  Similarity=0.043  Sum_probs=73.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC--------CCCcEEE-ecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS--------LPPSHIC-SRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d--------~~fD~Ii-~d~i  138 (158)
                      .++.+|||+|||+|.++..+++.+.+|+++|+++.  |++.+++++..+++. +.+...|        .+||+|+ ..++
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l  113 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTED--ILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA  113 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHH--HHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHH--HHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhh
Confidence            36779999999999999999998889999999965  999999999877643 4444433        2799999 8999


Q ss_pred             CCCccHHHHHHHHHHHhcC
Q 031506          139 QDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       139 y~~~~~~~ll~tl~~ll~~  157 (158)
                      ++.++.+.+++.+..+|.+
T Consensus       114 ~~~~d~~~~l~~~~r~Lkp  132 (260)
T 1vl5_A          114 HHFPNPASFVSEAYRVLKK  132 (260)
T ss_dssp             GGCSCHHHHHHHHHHHEEE
T ss_pred             HhcCCHHHHHHHHHHHcCC
Confidence            9999999999999988865

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.35  E-value=3.1e-12  Score=100.69  Aligned_cols=86  Identities=20%  Similarity=0.185  Sum_probs=73.5

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE-ecCCCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC-SRVLQDQ  141 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii-~d~iy~~  141 (158)
                      ++.+|||+|||+|..++.+++.|.+|+++|+++.  +++.+++|+..+++++++...|.       +||+|+ +.++++.
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~~~~~~  197 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNEN--SIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVVFMFL  197 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECSSGGGS
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHH--HHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEccchhhC
Confidence            6789999999999999999999999999999965  99999999999887766665543       799999 8888765


Q ss_pred             --ccHHHHHHHHHHHhcC
Q 031506          142 --SSLRLIIIEVGIILLS  157 (158)
Q Consensus       142 --~~~~~ll~tl~~ll~~  157 (158)
                        +....+++.+..+|.+
T Consensus       198 ~~~~~~~~l~~~~~~Lkp  215 (286)
T 3m70_A          198 NRERVPSIIKNMKEHTNV  215 (286)
T ss_dssp             CGGGHHHHHHHHHHTEEE
T ss_pred             CHHHHHHHHHHHHHhcCC
Confidence              5577899998887764

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.34  E-value=4.6e-12  Score=99.75  Aligned_cols=88  Identities=16%  Similarity=0.134  Sum_probs=69.4

Q ss_pred             cchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC
Q 031506           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL  128 (158)
Q Consensus        52 W~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~  128 (158)
                      -|.+..+.+++..... .++.+|||+|||+|..++.+++.  +.+|+++|+++.  +++.+++|+..+++. +.+...|.
T Consensus        92 r~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~--~l~~a~~n~~~~~~~~v~~~~~d~  168 (276)
T 2b3t_A           92 RPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPD--AVSLAQRNAQHLAIKNIHILQSDW  168 (276)
T ss_dssp             CTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHH--HHHHHHHHHHHHTCCSEEEECCST
T ss_pred             CchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCCceEEEEcch
Confidence            3667778887776433 45679999999999999988865  569999999965  999999999988764 55555443


Q ss_pred             -------CCcEEEecCCCCCc
Q 031506          129 -------PPSHICSRVLQDQS  142 (158)
Q Consensus       129 -------~fD~Ii~d~iy~~~  142 (158)
                             +||+|+++++|...
T Consensus       169 ~~~~~~~~fD~Iv~npPy~~~  189 (276)
T 2b3t_A          169 FSALAGQQFAMIVSNPPYIDE  189 (276)
T ss_dssp             TGGGTTCCEEEEEECCCCBCT
T ss_pred             hhhcccCCccEEEECCCCCCc
Confidence                   79999988888643

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.34  E-value=9.7e-12  Score=102.98  Aligned_cols=100  Identities=20%  Similarity=0.092  Sum_probs=71.5

Q ss_pred             eEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHH
Q 031506           35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRV  113 (158)
Q Consensus        35 ~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n  113 (158)
                      +++.+.......+|+. ++. ...-.++....  .++++|||+|||||.+++.+++.|+ +|+++|+++.  +++.+++|
T Consensus       181 ~~f~v~~~~~~~t~ff-~~~-~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~--al~~A~~N  254 (385)
T 2b78_A          181 ISYNVFLNDGLMTGIF-LDQ-RQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKR--SRALSLAH  254 (385)
T ss_dssp             EEEEECSSSSSCCSSC-GGG-HHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTT--HHHHHHHH
T ss_pred             EEEEEeccccccCCcC-CcH-HHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHH--HHHHHHHH
Confidence            3444443333345665 332 22223333221  3678999999999999999999877 8999999987  99999999


Q ss_pred             HHHcCCc---ceEEEcC------------CCCcEEEecCCCC
Q 031506          114 CEMNKLN---CRLLMTS------------LPPSHICSRVLQD  140 (158)
Q Consensus       114 ~~~n~~~---~~~~~~d------------~~fD~Ii~d~iy~  140 (158)
                      ++.|++.   +++...|            .+||+|++||+|.
T Consensus       255 ~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~  296 (385)
T 2b78_A          255 FEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSF  296 (385)
T ss_dssp             HHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC
T ss_pred             HHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCC
Confidence            9999874   5555543            2799999999986

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.34  E-value=1.1e-11  Score=103.12  Aligned_cols=85  Identities=16%  Similarity=0.076  Sum_probs=68.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC---------CCcEEEecCCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL---------PPSHICSRVLQD  140 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~---------~fD~Ii~d~iy~  140 (158)
                      ++++|||+|||||..++.+++.|+.|+++|+++.  +++.+++|++.|++..++...|.         .||+|++||+|+
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~--al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f  291 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLE--ALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL  291 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHH--HHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence            4889999999999999999999999999999965  99999999999998766654432         599999999986


Q ss_pred             Cc----------cHHHHHHHHHHHhc
Q 031506          141 QS----------SLRLIIIEVGIILL  156 (158)
Q Consensus       141 ~~----------~~~~ll~tl~~ll~  156 (158)
                      ..          .+..++.....+|.
T Consensus       292 ~~~~~~~~~~~~~~~~ll~~a~~~Lk  317 (393)
T 4dmg_A          292 VKRPEELPAMKRHLVDLVREALRLLA  317 (393)
T ss_dssp             CSSGGGHHHHHHHHHHHHHHHHHTEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            53          34455555555443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.34  E-value=4.3e-12  Score=95.17  Aligned_cols=84  Identities=14%  Similarity=0.127  Sum_probs=66.4

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----CCcEEEecCCCCC
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----PPSHICSRVLQDQ  141 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----~fD~Ii~d~iy~~  141 (158)
                      ..++.+|||+|||+|.+++.+++.|. +|+++|+++.  +++.+++|+..+++++.+...|.     +||+|++|++|+.
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~  124 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKE--AVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGS  124 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSS
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHH--HHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcc
Confidence            34678999999999999999998876 7999999965  99999999998887666665543     7999998888876


Q ss_pred             cc---HHHHHHHHHH
Q 031506          142 SS---LRLIIIEVGI  153 (158)
Q Consensus       142 ~~---~~~ll~tl~~  153 (158)
                      ..   ...+++.+..
T Consensus       125 ~~~~~~~~~l~~~~~  139 (207)
T 1wy7_A          125 QRKHADRPFLLKAFE  139 (207)
T ss_dssp             SSTTTTHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHH
Confidence            43   3344554443

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.34  E-value=4e-12  Score=95.13  Aligned_cols=100  Identities=16%  Similarity=0.098  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC----
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS----  127 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d----  127 (158)
                      ...+++.+.+.... ++.+|||+|||+|..+..+++. +.+|+++|+++.  +++.+++|+..+++.  +.+...|    
T Consensus        29 ~~~~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~  105 (219)
T 3dlc_A           29 YPIIAENIINRFGI-TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKH--MNEIALKNIADANLNDRIQIVQGDVHNI  105 (219)
T ss_dssp             HHHHHHHHHHHHCC-CEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEECBTTBC
T ss_pred             cHHHHHHHHHhcCC-CCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHH--HHHHHHHHHHhccccCceEEEEcCHHHC
Confidence            33445555543332 3339999999999999988886 669999999965  999999999988764  4444443    


Q ss_pred             ----CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 ----LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 ----~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                          .+||+|+ ..++++.+....+++.+..+|.+
T Consensus       106 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p  140 (219)
T 3dlc_A          106 PIEDNYADLIVSRGSVFFWEDVATAFREIYRILKS  140 (219)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE
T ss_pred             CCCcccccEEEECchHhhccCHHHHHHHHHHhCCC
Confidence                2799999 99999999999999999988764

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.34  E-value=4.1e-12  Score=101.23  Aligned_cols=88  Identities=20%  Similarity=0.194  Sum_probs=70.9

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-  128 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-  128 (158)
                      |.+..+.+++.......++.+|||+|||+|.+++.+++. +.+|+++|+++.  +++.+++|++.+++.  +.+...|+ 
T Consensus       106 ~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~--al~~A~~n~~~~~l~~~v~~~~~D~~  183 (284)
T 1nv8_A          106 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSK--AVEIARKNAERHGVSDRFFVRKGEFL  183 (284)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHH--HHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred             hhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCceEEEECcch
Confidence            567777777765432235679999999999999998887 679999999965  999999999999875  56666654 


Q ss_pred             -----CC---cEEEecCCCCCc
Q 031506          129 -----PP---SHICSRVLQDQS  142 (158)
Q Consensus       129 -----~f---D~Ii~d~iy~~~  142 (158)
                           +|   |+|+++|+|...
T Consensus       184 ~~~~~~f~~~D~IvsnPPyi~~  205 (284)
T 1nv8_A          184 EPFKEKFASIEMILSNPPYVKS  205 (284)
T ss_dssp             GGGGGGTTTCCEEEECCCCBCG
T ss_pred             hhcccccCCCCEEEEcCCCCCc
Confidence                 68   999999988753

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.34  E-value=2.5e-12  Score=96.23  Aligned_cols=87  Identities=17%  Similarity=0.180  Sum_probs=70.2

Q ss_pred             CCCCeEEEeccCCCHHH-HHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC--------CCcEEE-ecCC
Q 031506           69 FSGANVVELGAGTSLPG-LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL--------PPSHIC-SRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~-i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~--------~fD~Ii-~d~i  138 (158)
                      .++.+|||+|||+|..+ ..+++.+.+|+++|.++.  +++.+++++..++.++.+...|.        +||+|+ .+++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDL--QLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHH--HHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHH--HHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence            35679999999999874 456777889999999965  99999999887766666655432        699999 8889


Q ss_pred             CCC--ccHHHHHHHHHHHhcC
Q 031506          139 QDQ--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       139 y~~--~~~~~ll~tl~~ll~~  157 (158)
                      ++.  +....+++.+..+|.+
T Consensus       100 ~~~~~~~~~~~l~~~~~~Lkp  120 (209)
T 2p8j_A          100 FHMRKNDVKEAIDEIKRVLKP  120 (209)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE
T ss_pred             HhCCHHHHHHHHHHHHHHcCC
Confidence            887  6788888888887764

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.34  E-value=7.1e-12  Score=96.65  Aligned_cols=102  Identities=14%  Similarity=0.007  Sum_probs=79.6

Q ss_pred             chHHHHHHHHHhcc-cCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-
Q 031506           53 PCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~-~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-  127 (158)
                      |....+...+.... ...++.+|||+|||+|..++.+++.+. +|+++|+++.  +++.+++|+..+++.  +.+...| 
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~~~d~  105 (257)
T 3f4k_A           28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPD--FIEIFNENAVKANCADRVKGITGSM  105 (257)
T ss_dssp             SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHH--HHHHHHHHHHHcCCCCceEEEECCh
Confidence            44555555555543 334567999999999999998888765 9999999965  999999999988765  4455443 


Q ss_pred             -------CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 -------LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 -------~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                             .+||+|+ ..++++. ..+.+++.+..+|.+
T Consensus       106 ~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~p  142 (257)
T 3f4k_A          106 DNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKK  142 (257)
T ss_dssp             TSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEE
T ss_pred             hhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCC
Confidence                   2799999 8999888 688899998887764

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.33  E-value=1.3e-11  Score=97.90  Aligned_cols=99  Identities=9%  Similarity=0.009  Sum_probs=78.2

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-----CC
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-----LP  129 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-----~~  129 (158)
                      ..+.+.......++.+|||+|||+|..++.+++. |.+|+++|+++.  +++.+++++..+++.  +.+...|     .+
T Consensus        60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (302)
T 3hem_A           60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSEN--QYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP  137 (302)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHH--HHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred             HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEECCHHHcCCC
Confidence            3344554444457789999999999999988887 899999999965  999999999988765  4444443     48


Q ss_pred             CcEEE-ecCCCCC---------ccHHHHHHHHHHHhcCC
Q 031506          130 PSHIC-SRVLQDQ---------SSLRLIIIEVGIILLSS  158 (158)
Q Consensus       130 fD~Ii-~d~iy~~---------~~~~~ll~tl~~ll~~~  158 (158)
                      ||+|+ ..++.+.         +....+++.+..+|.++
T Consensus       138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg  176 (302)
T 3hem_A          138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD  176 (302)
T ss_dssp             CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT
T ss_pred             ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC
Confidence            99999 8898887         44588999998888753

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.33  E-value=8.4e-12  Score=98.51  Aligned_cols=89  Identities=16%  Similarity=0.171  Sum_probs=75.9

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE-e
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC-S  135 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii-~  135 (158)
                      ...++.+|||+|||+|..++.+++.   +++|+++|+++.  +++.+++++..++.++.+...|.       +||+|+ .
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~   96 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGET--LLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICH   96 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHH--HHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEE
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEEC
Confidence            3446789999999999999988886   579999999965  99999999988776666665543       699999 9


Q ss_pred             cCCCCCccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .++++.++.+.+++.+..+|.+
T Consensus        97 ~~l~~~~~~~~~l~~~~~~Lkp  118 (284)
T 3gu3_A           97 AFLLHMTTPETMLQKMIHSVKK  118 (284)
T ss_dssp             SCGGGCSSHHHHHHHHHHTEEE
T ss_pred             ChhhcCCCHHHHHHHHHHHcCC
Confidence            9999999999999999988764

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.33  E-value=6.7e-12  Score=92.53  Aligned_cols=99  Identities=12%  Similarity=-0.017  Sum_probs=69.0

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEc--------
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMT--------  126 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~--------  126 (158)
                      ..++..+.... ..++.+|||+|||+|..++.+++.+.+|+++|+++.  |++.+++|++.+++ ++++...        
T Consensus         9 ~~~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~--~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~   85 (185)
T 3mti_A            9 IHMSHDFLAEV-LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQ--ALGKTSQRLSDLGIENTELILDGHENLDHY   85 (185)
T ss_dssp             HHHHHHHHHTT-CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHH--HHHHHHHHHHHHTCCCEEEEESCGGGGGGT
T ss_pred             HHHHHHHHHHh-CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHH--HHHHHHHHHHHcCCCcEEEEeCcHHHHHhh
Confidence            34444444322 236789999999999999999998889999999965  99999999998875 2444432        


Q ss_pred             -CCCCcEEEecCCCCC----------ccHHHHHHHHHHHhcC
Q 031506          127 -SLPPSHICSRVLQDQ----------SSLRLIIIEVGIILLS  157 (158)
Q Consensus       127 -d~~fD~Ii~d~iy~~----------~~~~~ll~tl~~ll~~  157 (158)
                       +.+||+|++++.|.+          .....+++.+..+|.+
T Consensus        86 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  127 (185)
T 3mti_A           86 VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEV  127 (185)
T ss_dssp             CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEE
T ss_pred             ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCC
Confidence             226999996644433          3344566666666553

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.33  E-value=5.7e-13  Score=99.55  Aligned_cols=88  Identities=25%  Similarity=0.188  Sum_probs=51.9

Q ss_pred             chHHHHHHHHHhcccC-CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc---
Q 031506           53 PCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT---  126 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~-~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~---  126 (158)
                      +.+..+.+++...... .++.+|||+|||+|..++.+++.  +.+|+++|+++.  +++.+++|+..++.++++...   
T Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~~~~~d~~   89 (215)
T 4dzr_A           12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMD--ALAVARRNAERFGAVVDWAAADGI   89 (215)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHH
T ss_pred             ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHH--HHHHHHHHHHHhCCceEEEEcchH
Confidence            4456677776654333 56789999999999999999888  449999999976  999999999887654333222   


Q ss_pred             ----C-----CCCcEEEecCCCCCc
Q 031506          127 ----S-----LPPSHICSRVLQDQS  142 (158)
Q Consensus       127 ----d-----~~fD~Ii~d~iy~~~  142 (158)
                          +     .+||+|++|++|+..
T Consensus        90 ~~~~~~~~~~~~fD~i~~npp~~~~  114 (215)
T 4dzr_A           90 EWLIERAERGRPWHAIVSNPPYIPT  114 (215)
T ss_dssp             HHHHHHHHTTCCBSEEEECCCCCC-
T ss_pred             hhhhhhhhccCcccEEEECCCCCCC
Confidence                2     589999988887653

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.33  E-value=1.2e-11  Score=101.98  Aligned_cols=100  Identities=19%  Similarity=0.282  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC---
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL---  128 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~---  128 (158)
                      .....+++.+.....++++|||+|||+|.+++.+++.|+ +|+++|.+ .  |++.+++|++.|++.  +.+...|.   
T Consensus        48 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~  124 (376)
T 3r0q_C           48 MDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-K--MADHARALVKANNLDHIVEVIEGSVEDI  124 (376)
T ss_dssp             HHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-T--THHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred             HHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-H--HHHHHHHHHHHcCCCCeEEEEECchhhc
Confidence            344555666665667889999999999999999999988 99999999 6  999999999999876  45554432   


Q ss_pred             ----CCcEEEecCC-CCC---ccHHHHHHHHHHHhcC
Q 031506          129 ----PPSHICSRVL-QDQ---SSLRLIIIEVGIILLS  157 (158)
Q Consensus       129 ----~fD~Ii~d~i-y~~---~~~~~ll~tl~~ll~~  157 (158)
                          +||+|+++++ |..   ...+.+++.+..+|.+
T Consensus       125 ~~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~Lkp  161 (376)
T 3r0q_C          125 SLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKP  161 (376)
T ss_dssp             CCSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEE
T ss_pred             CcCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCC
Confidence                7999997663 443   5678888888777754

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.33  E-value=1.9e-11  Score=95.99  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHh-hcCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC--
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL--  128 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~--  128 (158)
                      +...+.+.+.......++.+|||+|||+|..++.++ +.|.+|+++|+++.  +++.+++++...++.  +.+...|.  
T Consensus        48 a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~  125 (287)
T 1kpg_A           48 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKN--QANHVQQLVANSENLRSKRVLLAGWEQ  125 (287)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH--HHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred             HHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHhcCCCCCeEEEECChhh
Confidence            344455666665545577899999999999999777 67889999999965  999999999877653  44444443  


Q ss_pred             ---CCcEEE-ecCCCCC--ccHHHHHHHHHHHhcCC
Q 031506          129 ---PPSHIC-SRVLQDQ--SSLRLIIIEVGIILLSS  158 (158)
Q Consensus       129 ---~fD~Ii-~d~iy~~--~~~~~ll~tl~~ll~~~  158 (158)
                         +||+|+ .+++++.  +....+++.+..+|.++
T Consensus       126 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  161 (287)
T 1kpg_A          126 FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD  161 (287)
T ss_dssp             CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred             CCCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC
Confidence               799999 9999887  77899999999988763

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.32  E-value=2.6e-11  Score=90.90  Aligned_cols=87  Identities=16%  Similarity=0.082  Sum_probs=69.2

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC--------CCcEEEe
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL--------PPSHICS  135 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~--------~fD~Ii~  135 (158)
                      ...++.+|||+|||+|..++.+++.+  .+|+++|+++.  +++.+++|+..+++. +++...|.        +||+|++
T Consensus        37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~  114 (204)
T 3e05_A           37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQ--YLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFI  114 (204)
T ss_dssp             TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHH--HHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEE
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEE
Confidence            34467899999999999999999887  69999999965  999999999988763 45554432        7999994


Q ss_pred             cCCCCCccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +...+  ....+++.+..+|.+
T Consensus       115 ~~~~~--~~~~~l~~~~~~Lkp  134 (204)
T 3e05_A          115 GGSGG--MLEEIIDAVDRRLKS  134 (204)
T ss_dssp             SCCTT--CHHHHHHHHHHHCCT
T ss_pred             CCCCc--CHHHHHHHHHHhcCC
Confidence            44333  778888888888765

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.32  E-value=1.4e-11  Score=98.49  Aligned_cols=87  Identities=15%  Similarity=0.039  Sum_probs=73.6

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------CCCcEEE-e
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------LPPSHIC-S  135 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------~~fD~Ii-~  135 (158)
                      ..++.+|||+|||+|..++.+++. +.+|+++|+++.  +++.+++|+..+++.  +.+...|        .+||+|+ .
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  192 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAA--QADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNN  192 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEEC
Confidence            346789999999999999988887 889999999965  999999999998865  5555443        2799999 9


Q ss_pred             cCCCCCccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +++++.. ...+++.+..+|.+
T Consensus       193 ~~l~~~~-~~~~l~~~~~~Lkp  213 (312)
T 3vc1_A          193 ESTMYVD-LHDLFSEHSRFLKV  213 (312)
T ss_dssp             SCGGGSC-HHHHHHHHHHHEEE
T ss_pred             CchhhCC-HHHHHHHHHHHcCC
Confidence            9998884 89999999988764

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.32  E-value=1.1e-11  Score=97.85  Aligned_cols=101  Identities=14%  Similarity=0.059  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhcc----cCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC
Q 031506           55 SVILAEYVWQQR----YRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS  127 (158)
Q Consensus        55 ~~~la~~l~~~~----~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d  127 (158)
                      ...+.+.+....    ...++.+|||+|||+|..+..+++. +.+|+++|+++.  +++.+++++...++.  +.+...|
T Consensus        63 ~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~~~~~~~d  140 (297)
T 2o57_A           63 SLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPV--QNKRNEEYNNQAGLADNITVKYGS  140 (297)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH--HHHHHHHHHHHHTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHH--HHHHHHHHHHhcCCCcceEEEEcC
Confidence            344445555443    4456789999999999999988876 889999999965  999999999877653  4555443


Q ss_pred             --------CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 --------LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 --------~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                              .+||+|+ .+++++..+...+++.+..+|.+
T Consensus       141 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp  179 (297)
T 2o57_A          141 FLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKP  179 (297)
T ss_dssp             TTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE
T ss_pred             cccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCC
Confidence                    2699999 99999999999999999988865

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.31  E-value=2.4e-11  Score=96.96  Aligned_cols=101  Identities=13%  Similarity=0.056  Sum_probs=80.6

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-----
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-----  127 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-----  127 (158)
                      ..+.+.+.......++.+|||+|||+|..++.+++. |.+|+++|+++.  +++.+++++..+++.  +.+...|     
T Consensus        76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  153 (318)
T 2fk8_A           76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKN--QHARCEQVLASIDTNRSRQVLLQGWEDFA  153 (318)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHH--HHHHHHHHHHTSCCSSCEEEEESCGGGCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEECChHHCC
Confidence            344555655544557789999999999999988876 889999999965  999999999887754  4444443     


Q ss_pred             CCCcEEE-ecCCCCC--ccHHHHHHHHHHHhcCC
Q 031506          128 LPPSHIC-SRVLQDQ--SSLRLIIIEVGIILLSS  158 (158)
Q Consensus       128 ~~fD~Ii-~d~iy~~--~~~~~ll~tl~~ll~~~  158 (158)
                      .+||+|+ ..++++.  +....+++.+..+|.++
T Consensus       154 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  187 (318)
T 2fk8_A          154 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD  187 (318)
T ss_dssp             CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred             CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC
Confidence            3799999 9999887  78899999999888753

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.31  E-value=6.5e-12  Score=94.69  Aligned_cols=87  Identities=14%  Similarity=0.120  Sum_probs=73.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC--------CCcEEE-e
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL--------PPSHIC-S  135 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~--------~fD~Ii-~  135 (158)
                      .++.+|||+|||+|..+..+++.+   .+|+++|+++.  +++.+++++..+++. +.+...|.        +||+|+ +
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  113 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEE--MVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMA  113 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHH--HHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHH--HHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEee
Confidence            357799999999999999888876   69999999965  999999999887754 55554432        799999 9


Q ss_pred             cCCCCCccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .++++.++...+++.+..+|.+
T Consensus       114 ~~l~~~~~~~~~l~~~~~~Lkp  135 (219)
T 3dh0_A          114 FTFHELSEPLKFLEELKRVAKP  135 (219)
T ss_dssp             SCGGGCSSHHHHHHHHHHHEEE
T ss_pred             hhhhhcCCHHHHHHHHHHHhCC
Confidence            9999999999999999988764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.31  E-value=1.2e-11  Score=96.56  Aligned_cols=102  Identities=23%  Similarity=0.251  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---  127 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---  127 (158)
                      ....+.+++.......++.+|||+|||+|..+..+++.  +.+|+++|+++.  +++.+++++..++.. +.+...|   
T Consensus        21 ~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~~d~~~   98 (276)
T 3mgg_A           21 QAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPE--SLEKARENTEKNGIKNVKFLQANIFS   98 (276)
T ss_dssp             --CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHH--HHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred             HHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEccccc
Confidence            34556666666555557889999999999999988887  569999999965  999999999887753 4444443   


Q ss_pred             -----CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 -----LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 -----~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                           .+||+|+ ..++++.++...+++.+..+|.+
T Consensus        99 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p  134 (276)
T 3mgg_A           99 LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKP  134 (276)
T ss_dssp             CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE
T ss_pred             CCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCC
Confidence                 2799999 99999999999999999988864

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.31  E-value=4.6e-12  Score=95.70  Aligned_cols=99  Identities=10%  Similarity=-0.017  Sum_probs=73.2

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc-------------CCcce
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-------------KLNCR  122 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n-------------~~~~~  122 (158)
                      ..+.+|+... ...++.+|||+|||+|..+..++++|.+|+++|+++.  |++.++++...+             ..+++
T Consensus         9 ~~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~   85 (203)
T 1pjz_A            9 KDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEA--AVERYFTERGEQPHITSQGDFKVYAAPGIE   85 (203)
T ss_dssp             HHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHH--HHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             HHHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHH--HHHHHHHHccCCcccccccccccccCCccE
Confidence            3455565432 1236789999999999999999999999999999975  999998876531             23455


Q ss_pred             EEEcCC---------CCcEEE-ecCCCCCc--cHHHHHHHHHHHhcC
Q 031506          123 LLMTSL---------PPSHIC-SRVLQDQS--SLRLIIIEVGIILLS  157 (158)
Q Consensus       123 ~~~~d~---------~fD~Ii-~d~iy~~~--~~~~ll~tl~~ll~~  157 (158)
                      +...|.         +||+|+ ..++++.+  ....+++.++.+|.+
T Consensus        86 ~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp  132 (203)
T 1pjz_A           86 IWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ  132 (203)
T ss_dssp             EEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS
T ss_pred             EEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC
Confidence            555542         699999 77776653  345688888888865

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.31  E-value=1.3e-11  Score=97.07  Aligned_cols=86  Identities=19%  Similarity=0.277  Sum_probs=73.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC---------CCCcEEE-ecC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS---------LPPSHIC-SRV  137 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d---------~~fD~Ii-~d~  137 (158)
                      ++.+|||+|||+|..+..+++.|.+|+++|+++.  +++.+++++..+++.  +.+...|         .+||+|+ ..+
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  145 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQ--MIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV  145 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence            4679999999999999999999999999999965  999999999987764  4444432         3799999 999


Q ss_pred             CCCCccHHHHHHHHHHHhcC
Q 031506          138 LQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +++.++...+++.+..+|.+
T Consensus       146 l~~~~~~~~~l~~~~~~Lkp  165 (285)
T 4htf_A          146 LEWVADPRSVLQTLWSVLRP  165 (285)
T ss_dssp             GGGCSCHHHHHHHHHHTEEE
T ss_pred             hhcccCHHHHHHHHHHHcCC
Confidence            99999999999999988864

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.31  E-value=1e-11  Score=95.73  Aligned_cols=92  Identities=24%  Similarity=0.161  Sum_probs=74.2

Q ss_pred             HHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcE
Q 031506           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSH  132 (158)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~  132 (158)
                      +.......++.+|||+|||+|..+..+++.+. +|+++|+++.  +++.++++..  ...+.+...|        .+||+
T Consensus        36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~--~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~  111 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSER--MLTEAKRKTT--SPVVCYEQKAIEDIAIEPDAYNV  111 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHCC--CTTEEEEECCGGGCCCCTTCEEE
T ss_pred             HHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHH--HHHHHHHhhc--cCCeEEEEcchhhCCCCCCCeEE
Confidence            33434445788999999999999999999888 9999999965  9999988876  2234444332        38999


Q ss_pred             EE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          133 IC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       133 Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      |+ +.++++.+....+++.+..+|.+
T Consensus       112 v~~~~~l~~~~~~~~~l~~~~~~Lkp  137 (253)
T 3g5l_A          112 VLSSLALHYIASFDDICKKVYINLKS  137 (253)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEE
T ss_pred             EEEchhhhhhhhHHHHHHHHHHHcCC
Confidence            99 99999999999999999998864

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.30  E-value=8.8e-12  Score=97.11  Aligned_cols=102  Identities=16%  Similarity=0.049  Sum_probs=78.3

Q ss_pred             chHHHHHHHHHhccc-CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC
Q 031506           53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL  128 (158)
Q Consensus        53 ~~~~~la~~l~~~~~-~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~  128 (158)
                      |........+..... ..++.+|||+|||+|..++.+++.+. +|+++|+++.  +++.++++++.+++.  +.+...|.
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~  105 (267)
T 3kkz_A           28 PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSG--FIDIFNRNARQSGLQNRVTGIVGSM  105 (267)
T ss_dssp             SCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             CCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHH--HHHHHHHHHHHcCCCcCcEEEEcCh
Confidence            344444444444332 34678999999999999998888765 9999999965  999999999988764  55554432


Q ss_pred             --------CCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          129 --------PPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       129 --------~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                              +||+|+ ..++++. ....+++.+..+|.+
T Consensus       106 ~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~Lkp  142 (267)
T 3kkz_A          106 DDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKK  142 (267)
T ss_dssp             TSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEE
T ss_pred             hhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCC
Confidence                    799999 8888888 788899988887764

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.30  E-value=2.8e-11  Score=98.56  Aligned_cols=97  Identities=25%  Similarity=0.329  Sum_probs=74.9

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-------
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-------  127 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-------  127 (158)
                      ..+++.+.....++.+|||+|||+|.+++.+++.|+ +|+++|+++   |++.+++|++.|++.  +.+...|       
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~---~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  128 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE---ILYQAMDIIRLNKLEDTITLIKGKIEEVHLP  128 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST---HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH---HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCC
Confidence            334555555556788999999999999999999887 999999994   899999999998863  4555443       


Q ss_pred             -CCCcEEEecC----CCCCccHHHHHHHHHHHhcC
Q 031506          128 -LPPSHICSRV----LQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 -~~fD~Ii~d~----iy~~~~~~~ll~tl~~ll~~  157 (158)
                       .+||+|+++.    +.+....+.++..+..+|.+
T Consensus       129 ~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp  163 (340)
T 2fyt_A          129 VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAK  163 (340)
T ss_dssp             CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE
T ss_pred             CCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCC
Confidence             2799999554    44556778888888877764

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.30  E-value=6.2e-12  Score=95.85  Aligned_cols=86  Identities=16%  Similarity=0.024  Sum_probs=71.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE-ec-CCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC-SR-VLQD  140 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii-~d-~iy~  140 (158)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.  |++.++++...++..+.+...|.       +||+|+ .. ++++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~--~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQE--MLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHH--HHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHH--HHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence            6789999999999999999999999999999965  99999999988766666655432       799999 65 8888


Q ss_pred             C---ccHHHHHHHHHHHhcC
Q 031506          141 Q---SSLRLIIIEVGIILLS  157 (158)
Q Consensus       141 ~---~~~~~ll~tl~~ll~~  157 (158)
                      .   +....+++.+..+|.+
T Consensus       115 ~~~~~~~~~~l~~~~~~L~p  134 (246)
T 1y8c_A          115 IIDSDDLKKYFKAVSNHLKE  134 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCC
Confidence            7   6677788887776653

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.30  E-value=1.7e-11  Score=100.15  Aligned_cols=96  Identities=22%  Similarity=0.268  Sum_probs=75.6

Q ss_pred             HHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------
Q 031506           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------  127 (158)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------  127 (158)
                      .+.+.......++++|||+|||+|.+++.+++.|+ +|+++|+++   |++.+++|++.+++.  +.+...|        
T Consensus        55 ~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~---~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  131 (349)
T 3q7e_A           55 RNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS---ISDYAVKIVKANKLDHVVTIIKGKVEEVELPV  131 (349)
T ss_dssp             HHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST---HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred             HHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH---HHHHHHHHHHHcCCCCcEEEEECcHHHccCCC
Confidence            33444444456788999999999999999999987 999999993   899999999999876  4555443        


Q ss_pred             CCCcEEEecC----CCCCccHHHHHHHHHHHhcC
Q 031506          128 LPPSHICSRV----LQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 ~~fD~Ii~d~----iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .+||+|++++    +.+....+.+++.+..+|.+
T Consensus       132 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~Lkp  165 (349)
T 3q7e_A          132 EKVDIIISEWMGYCLFYESMLNTVLHARDKWLAP  165 (349)
T ss_dssp             SCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEE
T ss_pred             CceEEEEEccccccccCchhHHHHHHHHHHhCCC
Confidence            2799999655    34557888899888887764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.29  E-value=7e-12  Score=94.91  Aligned_cols=86  Identities=17%  Similarity=0.189  Sum_probs=71.5

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC------cceEEEcC--------CCCcEEE-
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL------NCRLLMTS--------LPPSHIC-  134 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~------~~~~~~~d--------~~fD~Ii-  134 (158)
                      ++.+|||+|||+|..++.+++.+.+|+++|+++.  +++.+++++..+++      .+.+...|        .+||+|+ 
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSE--AIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHH--HHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            6779999999999999999999999999999965  99999999887765      24444443        2799999 


Q ss_pred             ecCCCCCccHH---HHHHHHHHHhcC
Q 031506          135 SRVLQDQSSLR---LIIIEVGIILLS  157 (158)
Q Consensus       135 ~d~iy~~~~~~---~ll~tl~~ll~~  157 (158)
                      +.++++..+..   .+++.+..+|.+
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~p  133 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLKP  133 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEEE
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcCC
Confidence            99999888777   788888877754

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.29  E-value=2.7e-11  Score=88.20  Aligned_cols=96  Identities=13%  Similarity=0.052  Sum_probs=73.8

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcCC---
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTSL---  128 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d~---  128 (158)
                      +....+.+++.......++.+|||+|||+|..++.+++.+.+|+++|+++.  +++.+++|+..+++ ++.+...|.   
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~~~~~~d~~~~   95 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDG--AIEVTKQNLAKFNIKNCQIIKGRAEDV   95 (183)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHH--HHHHHHHHHHHTTCCSEEEEESCHHHH
T ss_pred             cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHH--HHHHHHHHHHHcCCCcEEEEECCcccc
Confidence            344555566655444457789999999999999999887779999999965  99999999998876 355555442   


Q ss_pred             ----CCcEEE-ecCCCCCccHHHHHHHHHHH
Q 031506          129 ----PPSHIC-SRVLQDQSSLRLIIIEVGII  154 (158)
Q Consensus       129 ----~fD~Ii-~d~iy~~~~~~~ll~tl~~l  154 (158)
                          +||+|+ ..+    .....+++.+..+
T Consensus        96 ~~~~~~D~i~~~~~----~~~~~~l~~~~~~  122 (183)
T 2yxd_A           96 LDKLEFNKAFIGGT----KNIEKIIEILDKK  122 (183)
T ss_dssp             GGGCCCSEEEECSC----SCHHHHHHHHHHT
T ss_pred             ccCCCCcEEEECCc----ccHHHHHHHHhhC
Confidence                799999 555    6677888777654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.29  E-value=7e-12  Score=93.97  Aligned_cols=114  Identities=19%  Similarity=0.194  Sum_probs=80.2

Q ss_pred             ceEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHH
Q 031506           34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~  112 (158)
                      ...+.+.+....+.|  .++....+.+++....  .++.+|||+|||+|..++.+++.+. +|+++|+++.  +++.+++
T Consensus        28 ~~~~~~~~~~~f~~~--~~~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~--~~~~a~~  101 (205)
T 3grz_A           28 QEIIRLDPGLAFGTG--NHQTTQLAMLGIERAM--VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDE--SMTAAEE  101 (205)
T ss_dssp             CEEEEESCC-----C--CHHHHHHHHHHHHHHC--SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHH--HHHHHHH
T ss_pred             ceeEEecCCcccCCC--CCccHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHH--HHHHHHH
Confidence            445555554433333  4677888888877542  3578999999999999999988876 9999999965  9999999


Q ss_pred             HHHHcCCc-ceEEEcCC------CCcEEEecCCCCCccHHHHHHHHHHHh
Q 031506          113 VCEMNKLN-CRLLMTSL------PPSHICSRVLQDQSSLRLIIIEVGIIL  155 (158)
Q Consensus       113 n~~~n~~~-~~~~~~d~------~fD~Ii~d~iy~~~~~~~ll~tl~~ll  155 (158)
                      |+..++.. +++...|.      +||+|+++..++  .+..+++.+..+|
T Consensus       102 ~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~--~~~~~l~~~~~~L  149 (205)
T 3grz_A          102 NAALNGIYDIALQKTSLLADVDGKFDLIVANILAE--ILLDLIPQLDSHL  149 (205)
T ss_dssp             HHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH--HHHHHGGGSGGGE
T ss_pred             HHHHcCCCceEEEeccccccCCCCceEEEECCcHH--HHHHHHHHHHHhc
Confidence            99988875 66666554      899999554432  2355555554444

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.29  E-value=2.5e-11  Score=100.55  Aligned_cols=86  Identities=19%  Similarity=0.062  Sum_probs=69.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCC---cceEEEcC------------CCCcE
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL---NCRLLMTS------------LPPSH  132 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~~d------------~~fD~  132 (158)
                      .++.+|||+|||+|.+++.+++.|+ +|+++|+++.  +++.+++|++.|++   ++.+...|            .+||+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~--al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~  296 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQE--ALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence            3678999999999999999999875 9999999965  99999999999998   45655543            27999


Q ss_pred             EEecCCCCC----------ccHHHHHHHHHHHhc
Q 031506          133 ICSRVLQDQ----------SSLRLIIIEVGIILL  156 (158)
Q Consensus       133 Ii~d~iy~~----------~~~~~ll~tl~~ll~  156 (158)
                      |++||+|..          ..+..++.....+|.
T Consensus       297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  330 (396)
T 3c0k_A          297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN  330 (396)
T ss_dssp             EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEE
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcC
Confidence            999998864          456666666665554

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.29  E-value=9e-12  Score=97.70  Aligned_cols=99  Identities=21%  Similarity=0.239  Sum_probs=75.5

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHH---cCCc--ceEEE
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM---NKLN--CRLLM  125 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~---n~~~--~~~~~  125 (158)
                      -.+..|+.|+.    ..++.+|||+|||+|.+++.+++++  .+|+++|+++.  +++.+++|+..   |++.  +.+..
T Consensus        23 ~D~~lL~~~~~----~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~--~~~~a~~n~~~~~~~~l~~~v~~~~   96 (260)
T 2ozv_A           23 MDAMLLASLVA----DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQE--MAEFARRSLELPDNAAFSARIEVLE   96 (260)
T ss_dssp             CHHHHHHHTCC----CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHH--HHHHHHHHTTSGGGTTTGGGEEEEE
T ss_pred             cHHHHHHHHhc----ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHH--HHHHHHHHHHhhhhCCCcceEEEEe
Confidence            57788888763    2356799999999999999988875  59999999965  99999999998   7765  44443


Q ss_pred             cC---------------CCCcEEEecCCCCCc-------------------cHHHHHHHHHHHhcC
Q 031506          126 TS---------------LPPSHICSRVLQDQS-------------------SLRLIIIEVGIILLS  157 (158)
Q Consensus       126 ~d---------------~~fD~Ii~d~iy~~~-------------------~~~~ll~tl~~ll~~  157 (158)
                      .|               .+||+|+++|+|+..                   .++.+++.+..+|.+
T Consensus        97 ~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp  162 (260)
T 2ozv_A           97 ADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS  162 (260)
T ss_dssp             CCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE
T ss_pred             CCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC
Confidence            32               259999988888765                   267788888877754

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.29  E-value=1.4e-12  Score=100.18  Aligned_cols=70  Identities=13%  Similarity=0.030  Sum_probs=59.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC-------CCcEEEecCCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL-------PPSHICSRVLQD  140 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~-------~fD~Ii~d~iy~  140 (158)
                      ++.+|||+|||+|..++.+++.|.+|+++|+++.  +++.+++|++.+++  ++.+...|.       +||+|+++++|+
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPV--KIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG  155 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence            6789999999999999999999999999999965  99999999999987  456665543       899999666655


Q ss_pred             C
Q 031506          141 Q  141 (158)
Q Consensus       141 ~  141 (158)
                      .
T Consensus       156 ~  156 (241)
T 3gdh_A          156 G  156 (241)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.28  E-value=1.8e-11  Score=94.45  Aligned_cols=87  Identities=14%  Similarity=0.085  Sum_probs=71.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRVLQ  139 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~iy  139 (158)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.+++++.....++.+...|        .+||+|+ ..+++
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  115 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAA--MLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH  115 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHH--HHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHH--HHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence            46789999999999999999988999999999965  9999999873222334554443        2699999 99999


Q ss_pred             CCccHHHHHHHHHHHhcC
Q 031506          140 DQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll~~  157 (158)
                      +.++...+++.+..+|.+
T Consensus       116 ~~~~~~~~l~~~~~~L~p  133 (263)
T 2yqz_A          116 LVPDWPKVLAEAIRVLKP  133 (263)
T ss_dssp             GCTTHHHHHHHHHHHEEE
T ss_pred             hcCCHHHHHHHHHHHCCC
Confidence            998999999999888764

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.28  E-value=1.3e-11  Score=94.36  Aligned_cols=97  Identities=10%  Similarity=-0.036  Sum_probs=75.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC------
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL------  128 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~------  128 (158)
                      .+.+++...  ..++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.+++++..++.  ++.+...|.      
T Consensus        55 ~l~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  130 (235)
T 3lcc_A           55 LIVHLVDTS--SLPLGRALVPGCGGGHDVVAMASPERFVVGLDISES--ALAKANETYGSSPKAEYFSFVKEDVFTWRPT  130 (235)
T ss_dssp             HHHHHHHTT--CSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHH--HHHHHHHHHTTSGGGGGEEEECCCTTTCCCS
T ss_pred             HHHHHHHhc--CCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHH--HHHHHHHHhhccCCCcceEEEECchhcCCCC
Confidence            444554432  234569999999999999999998899999999965  99999999876432  345554433      


Q ss_pred             -CCcEEE-ecCCCCCc--cHHHHHHHHHHHhcC
Q 031506          129 -PPSHIC-SRVLQDQS--SLRLIIIEVGIILLS  157 (158)
Q Consensus       129 -~fD~Ii-~d~iy~~~--~~~~ll~tl~~ll~~  157 (158)
                       +||+|+ ..++++.+  ....+++.+..+|.+
T Consensus       131 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp  163 (235)
T 3lcc_A          131 ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKP  163 (235)
T ss_dssp             SCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEE
T ss_pred             CCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCC
Confidence             799999 89998877  889999999988764

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.28  E-value=5.2e-11  Score=90.10  Aligned_cols=85  Identities=12%  Similarity=0.088  Sum_probs=67.0

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC--------CCcEEEec
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL--------PPSHICSR  136 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~--------~fD~Ii~d  136 (158)
                      ...++.+|||+|||+|.+++.+++.+.+|+++|+++.  +++.+++|++.+++.  +.+...|.        +||+|+++
T Consensus        52 ~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~--~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~  129 (204)
T 3njr_A           52 APRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRAD--RIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIG  129 (204)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEEC
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEEC
Confidence            3446789999999999999999988889999999965  999999999998875  55554432        79999944


Q ss_pred             CCCCCccHHHHHHHHHHHhcC
Q 031506          137 VLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ...   ..+ +++.+..+|.+
T Consensus       130 ~~~---~~~-~l~~~~~~Lkp  146 (204)
T 3njr_A          130 GGG---SQA-LYDRLWEWLAP  146 (204)
T ss_dssp             SCC---CHH-HHHHHHHHSCT
T ss_pred             Ccc---cHH-HHHHHHHhcCC
Confidence            422   344 78888777764

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.28  E-value=2.5e-11  Score=98.90  Aligned_cols=101  Identities=18%  Similarity=0.087  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC--
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL--  128 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~--  128 (158)
                      ...++..+.......++.+|||+|||+|.+++.++..+   .+|+++|+++.  +++.+++|++.+++. +.+...|.  
T Consensus       188 ~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~--~i~~a~~n~~~~g~~~i~~~~~D~~~  265 (354)
T 3tma_A          188 TPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEK--RLGLAREAALASGLSWIRFLRADARH  265 (354)
T ss_dssp             CHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHH--HHHHHHHHHHHTTCTTCEEEECCGGG
T ss_pred             CHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHH--HHHHHHHHHHHcCCCceEEEeCChhh
Confidence            35566666654444567899999999999999988865   69999999965  999999999998874 56665542  


Q ss_pred             ------CCcEEEecCCCCCcc---------HHHHHHHHHHHhcC
Q 031506          129 ------PPSHICSRVLQDQSS---------LRLIIIEVGIILLS  157 (158)
Q Consensus       129 ------~fD~Ii~d~iy~~~~---------~~~ll~tl~~ll~~  157 (158)
                            .||+|++||+|....         +..+++.+..+|.+
T Consensus       266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp  309 (354)
T 3tma_A          266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP  309 (354)
T ss_dssp             GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT
T ss_pred             CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC
Confidence                  689999999997533         36677777776653

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.27  E-value=2.3e-11  Score=100.18  Aligned_cols=97  Identities=8%  Similarity=0.019  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcC---
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTS---  127 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d---  127 (158)
                      ...++..+.... ..++.+|||+|||+|.+++.+++.+.  +|+++|+++.  |++.+++|+..+++  .+.+...|   
T Consensus       203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~--~l~~A~~n~~~~gl~~~i~~~~~D~~~  279 (373)
T 3tm4_A          203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRK--HLIGAEMNALAAGVLDKIKFIQGDATQ  279 (373)
T ss_dssp             CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHH--HHHHHHHHHHHTTCGGGCEEEECCGGG
T ss_pred             cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHH--HHHHHHHHHHHcCCCCceEEEECChhh
Confidence            345555555444 45678999999999999999999887  9999999965  99999999999987  45666554   


Q ss_pred             -----CCCcEEEecCCCCCcc---------HHHHHHHHHHH
Q 031506          128 -----LPPSHICSRVLQDQSS---------LRLIIIEVGII  154 (158)
Q Consensus       128 -----~~fD~Ii~d~iy~~~~---------~~~ll~tl~~l  154 (158)
                           .+||+|++||+|....         +..+++.+..+
T Consensus       280 ~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~  320 (373)
T 3tm4_A          280 LSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKV  320 (373)
T ss_dssp             GGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHH
T ss_pred             CCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHH
Confidence                 2799999999987532         34555555553

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.27  E-value=1.5e-11  Score=96.42  Aligned_cols=99  Identities=14%  Similarity=-0.049  Sum_probs=72.2

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH------------------cC
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM------------------NK  118 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~------------------n~  118 (158)
                      .+.+|+.......++.+|||+|||+|..+..+++.|.+|+++|+++.  |++.++++...                  ..
T Consensus        55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~--~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (252)
T 2gb4_A           55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEI--GIREFFAEQNLSYTEEPLAEIAGAKVFKSSS  132 (252)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHH--HHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHH--HHHHHHHhcccccccccccccccccccccCC
Confidence            45666644222236779999999999999999999999999999975  99988766532                  12


Q ss_pred             CcceEEEcC---------CCCcEEE-ecCCCCC--ccHHHHHHHHHHHhcC
Q 031506          119 LNCRLLMTS---------LPPSHIC-SRVLQDQ--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       119 ~~~~~~~~d---------~~fD~Ii-~d~iy~~--~~~~~ll~tl~~ll~~  157 (158)
                      .++++...|         .+||+|+ ..++.+.  +....+++.+..+|.+
T Consensus       133 ~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp  183 (252)
T 2gb4_A          133 GSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK  183 (252)
T ss_dssp             SSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE
T ss_pred             CceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC
Confidence            345555543         3799999 6666554  3456788888888764

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.27  E-value=1.8e-11  Score=93.43  Aligned_cols=95  Identities=15%  Similarity=0.092  Sum_probs=74.2

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------C
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------L  128 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~  128 (158)
                      .+.+++....  .++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.++++...  ..+.+...|        .
T Consensus        42 ~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~  115 (242)
T 3l8d_A           42 TIIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEV--MIQKGKERGEG--PDLSFIKGDLSSLPFENE  115 (242)
T ss_dssp             THHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHTTTCB--TTEEEEECBTTBCSSCTT
T ss_pred             HHHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHH--HHHHHHhhccc--CCceEEEcchhcCCCCCC
Confidence            3444454432  25779999999999999999999999999999965  99988887522  234444332        3


Q ss_pred             CCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          129 PPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       129 ~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +||+|+ ..++++.+....+++.+..+|.+
T Consensus       116 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p  145 (242)
T 3l8d_A          116 QFEAIMAINSLEWTEEPLRALNEIKRVLKS  145 (242)
T ss_dssp             CEEEEEEESCTTSSSCHHHHHHHHHHHEEE
T ss_pred             CccEEEEcChHhhccCHHHHHHHHHHHhCC
Confidence            799999 99999999999999999988764

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.27  E-value=1.8e-11  Score=96.43  Aligned_cols=87  Identities=16%  Similarity=0.182  Sum_probs=69.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc----CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC------CCcEEE-e
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL------PPSHIC-S  135 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~----g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~------~fD~Ii-~  135 (158)
                      .++.+|||||||||..++.+++.    |++|+++|+++.  |++.++++++..+..  +.+...|.      +||+|+ .
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~--ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~  146 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPA--MIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN  146 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHH--HHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHH--HHHHHHHHHHhhccCceEEEeecccccccccccccceee
Confidence            36789999999999999988775    569999999965  999999999877654  45555543      799999 8


Q ss_pred             cCCCCCcc--HHHHHHHHHHHhcC
Q 031506          136 RVLQDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~--~~~ll~tl~~ll~~  157 (158)
                      .++++.+.  ...+++.+...|.+
T Consensus       147 ~~l~~~~~~~~~~~l~~i~~~Lkp  170 (261)
T 4gek_A          147 FTLQFLEPSERQALLDKIYQGLNP  170 (261)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred             eeeeecCchhHhHHHHHHHHHcCC
Confidence            88877643  45788999888765

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.26  E-value=3.9e-11  Score=106.35  Aligned_cols=86  Identities=19%  Similarity=0.117  Sum_probs=69.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEcC---------CCCcEEEec
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMTS---------LPPSHICSR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~d---------~~fD~Ii~d  136 (158)
                      ++++|||+|||||.+++.+++.|+ +|+++|+++.  +++.+++|++.|++.   +.+...|         .+||+|++|
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~--al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D  616 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRT--YLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID  616 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence            688999999999999999998887 6999999975  999999999999976   5555554         279999999


Q ss_pred             CCCCC------------ccHHHHHHHHHHHhcC
Q 031506          137 VLQDQ------------SSLRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~------------~~~~~ll~tl~~ll~~  157 (158)
                      |+|+.            ..+..+++....+|.+
T Consensus       617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp  649 (703)
T 3v97_A          617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA  649 (703)
T ss_dssp             CCSBC-------CCBHHHHHHHHHHHHHHHEEE
T ss_pred             CccccCCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence            98754            2355666666666543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.25  E-value=2.5e-11  Score=90.50  Aligned_cols=83  Identities=16%  Similarity=0.077  Sum_probs=67.5

Q ss_pred             eEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecCCCCCcc
Q 031506           73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRVLQDQSS  143 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~iy~~~~  143 (158)
                      +|||+|||+|..+..+++.|.+|+++|+++.  +++.++++...++..+.+...|        .+||+|+ +.+.+..+.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~  109 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLGYEVTAVDQSSV--GLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSL  109 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTTCEEEEECSSHH--HHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCCCHHH
T ss_pred             CEEEECCCCCHhHHHHHhCCCeEEEEECCHH--HHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcCCHHH
Confidence            9999999999999999999999999999965  9999999998876666555443        2799999 654444467


Q ss_pred             HHHHHHHHHHHhcC
Q 031506          144 LRLIIIEVGIILLS  157 (158)
Q Consensus       144 ~~~ll~tl~~ll~~  157 (158)
                      ...+++.+..+|.+
T Consensus       110 ~~~~l~~~~~~L~p  123 (202)
T 2kw5_A          110 RQQLYPKVYQGLKP  123 (202)
T ss_dssp             HHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHhcCC
Confidence            78888888877765

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=7.5e-12  Score=97.56  Aligned_cols=93  Identities=14%  Similarity=0.050  Sum_probs=74.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------C
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------L  128 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~  128 (158)
                      .+++++.+.....++.+|||+|||+|..++.+++.+.+|+++|+++.  |++.++++.     ++.+...|        .
T Consensus        21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~--~~~~a~~~~-----~~~~~~~d~~~~~~~~~   93 (261)
T 3ege_A           21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIV--MRQQAVVHP-----QVEWFTGYAENLALPDK   93 (261)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHH--HHHSSCCCT-----TEEEECCCTTSCCSCTT
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHH--HHHHHHhcc-----CCEEEECchhhCCCCCC
Confidence            45666665444457789999999999999999999999999999964  888666544     33443332        3


Q ss_pred             CCcEEE-ecCCCCCccHHHHHHHHHHHhc
Q 031506          129 PPSHIC-SRVLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       129 ~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~  156 (158)
                      +||+|+ ..++++.++...+++.+..+|.
T Consensus        94 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk  122 (261)
T 3ege_A           94 SVDGVISILAIHHFSHLEKSFQEMQRIIR  122 (261)
T ss_dssp             CBSEEEEESCGGGCSSHHHHHHHHHHHBC
T ss_pred             CEeEEEEcchHhhccCHHHHHHHHHHHhC
Confidence            799999 9999999999999999998876

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.25  E-value=1e-11  Score=94.49  Aligned_cols=84  Identities=13%  Similarity=0.110  Sum_probs=69.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-------CCCCcEEE-ecCCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-------SLPPSHIC-SRVLQD  140 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-------d~~fD~Ii-~d~iy~  140 (158)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.++++...   .+.+...       +.+||+|+ ..++++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~--~~~~a~~~~~~---~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  115 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEE--AISHAQGRLKD---GITYIHSRFEDAQLPRRYDNIVLTHVLEH  115 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHH--HHHHHHHHSCS---CEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHH--HHHHHHHhhhC---CeEEEEccHHHcCcCCcccEEEEhhHHHh
Confidence            46779999999999999999999999999999965  99998887653   3344333       33799999 999999


Q ss_pred             CccHHHHHHHHH-HHhcC
Q 031506          141 QSSLRLIIIEVG-IILLS  157 (158)
Q Consensus       141 ~~~~~~ll~tl~-~ll~~  157 (158)
                      .++...+++.+. .+|.+
T Consensus       116 ~~~~~~~l~~~~~~~Lkp  133 (250)
T 2p7i_A          116 IDDPVALLKRINDDWLAE  133 (250)
T ss_dssp             CSSHHHHHHHHHHTTEEE
T ss_pred             hcCHHHHHHHHHHHhcCC
Confidence            999999999998 77754

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=9.5e-11  Score=89.89  Aligned_cols=86  Identities=12%  Similarity=0.045  Sum_probs=71.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------------CCcEEE-
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------------PPSHIC-  134 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------------~fD~Ii-  134 (158)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.  |++.++++...  .++.+...|.             .||+|+ 
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~--~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~  130 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKS--ALEIAAKENTA--ANISYRLLDGLVPEQAAQIHSEIGDANIYM  130 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHH--HHHHHHHHSCC--TTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHH--HHHHHHHhCcc--cCceEEECcccccccccccccccCccEEEE
Confidence            46679999999999999999999999999999965  99999988732  2455555543             389999 


Q ss_pred             ecCCCCCc--cHHHHHHHHHHHhcCC
Q 031506          135 SRVLQDQS--SLRLIIIEVGIILLSS  158 (158)
Q Consensus       135 ~d~iy~~~--~~~~ll~tl~~ll~~~  158 (158)
                      ..++++.+  ....+++.+..+|.++
T Consensus       131 ~~~~~~~~~~~~~~~l~~~~~~Lkpg  156 (245)
T 3ggd_A          131 RTGFHHIPVEKRELLGQSLRILLGKQ  156 (245)
T ss_dssp             ESSSTTSCGGGHHHHHHHHHHHHTTT
T ss_pred             cchhhcCCHHHHHHHHHHHHHHcCCC
Confidence            88998888  7899999999988763

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.25  E-value=5.2e-11  Score=92.20  Aligned_cols=71  Identities=11%  Similarity=0.084  Sum_probs=56.7

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------------CCCc
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------------LPPS  131 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------------~~fD  131 (158)
                      ++.+|||+|||+|.+++.+++.  +.+|+++|+++.  |++.+++|++.+++.  +.+...|              .+||
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDM--CFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD  142 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHH--HHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCccc
Confidence            5679999999999999877765  679999999965  999999999998764  4554332              2599


Q ss_pred             EEEecCCCCCc
Q 031506          132 HICSRVLQDQS  142 (158)
Q Consensus       132 ~Ii~d~iy~~~  142 (158)
                      +|+++|+|+..
T Consensus       143 ~i~~npp~~~~  153 (254)
T 2h00_A          143 FCMCNPPFFAN  153 (254)
T ss_dssp             EEEECCCCC--
T ss_pred             EEEECCCCccC
Confidence            99988888754

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.25  E-value=3e-12  Score=97.25  Aligned_cols=84  Identities=8%  Similarity=0.033  Sum_probs=66.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE-ecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC-SRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii-~d~iy  139 (158)
                      ...+|||||||+|.+++.++..  +++|+++|+++.  |++.+++|+..++...++...|.       +||+|+ .+++.
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~--~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LH  126 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRA--EIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLP  126 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHH--HHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHH
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHH
Confidence            4679999999999999998776  569999999975  99999999999988755544543       799999 99887


Q ss_pred             CCccHHHHHHHHHHHh
Q 031506          140 DQSSLRLIIIEVGIIL  155 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll  155 (158)
                      +.+..+..+..+...|
T Consensus       127 lL~~~~~al~~v~~~L  142 (200)
T 3fzg_A          127 VLKQQDVNILDFLQLF  142 (200)
T ss_dssp             HHHHTTCCHHHHHHTC
T ss_pred             hhhhhHHHHHHHHHHh
Confidence            7655444444444444

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.24  E-value=4.5e-11  Score=91.98  Aligned_cols=87  Identities=22%  Similarity=0.254  Sum_probs=69.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE-e-cCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC-S-RVLQ  139 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii-~-d~iy  139 (158)
                      .++.+|||+|||+|..++.+++.|.+|+++|+++.  |++.+++|+..++.++.+...|.       +||+|+ . ..+.
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  117 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEE--MLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM  117 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHH--HHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCchh
Confidence            35679999999999999999999999999999965  99999999988877776665543       799999 3 3332


Q ss_pred             C--CccHHHHHHHHHHHhcC
Q 031506          140 D--QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       140 ~--~~~~~~ll~tl~~ll~~  157 (158)
                      +  .+....+++.+..+|.+
T Consensus       118 ~~~~~~~~~~l~~~~~~L~p  137 (252)
T 1wzn_A          118 YFDEEDLRKLFSKVAEALKP  137 (252)
T ss_dssp             GSCHHHHHHHHHHHHHHEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCC
Confidence            2  34577888888877754

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.24  E-value=1.7e-11  Score=93.54  Aligned_cols=86  Identities=19%  Similarity=0.088  Sum_probs=70.5

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecC
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRV  137 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~  137 (158)
                      ..++.+|||+|||+|..+..+++.+. +|+++|+++.  +++.++++...++  +.+...|        .+||+|+ ..+
T Consensus        41 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~--~~~~~~d~~~~~~~~~~fD~v~~~~~  116 (243)
T 3bkw_A           41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEK--MLARARAAGPDTG--ITYERADLDKLHLPQDSFDLAYSSLA  116 (243)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH--HHHHHHHTSCSSS--EEEEECCGGGCCCCTTCEEEEEEESC
T ss_pred             ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHH--HHHHHHHhcccCC--ceEEEcChhhccCCCCCceEEEEecc
Confidence            34678999999999999999999888 9999999965  9999888765432  3333332        2799999 999


Q ss_pred             CCCCccHHHHHHHHHHHhcC
Q 031506          138 LQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +++.+....+++.+..+|.+
T Consensus       117 l~~~~~~~~~l~~~~~~L~p  136 (243)
T 3bkw_A          117 LHYVEDVARLFRTVHQALSP  136 (243)
T ss_dssp             GGGCSCHHHHHHHHHHHEEE
T ss_pred             ccccchHHHHHHHHHHhcCc
Confidence            99999999999999988764

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.24  E-value=1.1e-11  Score=98.19  Aligned_cols=82  Identities=17%  Similarity=0.080  Sum_probs=64.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEEecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHICSRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii~d~iy  139 (158)
                      ++.+|||+|||+|.+++.+++.|+ +|+++|+++.  +++.+++|++.|++.  +.+...|.       +||+|++|+++
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~--~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~  202 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPY--TFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  202 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHH--HHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHH--HHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence            478999999999999999999888 6999999965  999999999999876  44444432       79999988776


Q ss_pred             CCccHHHHHHHHHHHhc
Q 031506          140 DQSSLRLIIIEVGIILL  156 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll~  156 (158)
                      ..   ..+++.+..+|.
T Consensus       203 ~~---~~~l~~~~~~Lk  216 (278)
T 2frn_A          203 RT---HEFIPKALSIAK  216 (278)
T ss_dssp             SG---GGGHHHHHHHEE
T ss_pred             hH---HHHHHHHHHHCC
Confidence            54   344555544443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.24  E-value=6.7e-11  Score=99.24  Aligned_cols=95  Identities=9%  Similarity=0.036  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC----
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL----  128 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~----  128 (158)
                      .+..+.+++.......++.+|||+|||+|.+++.+++.+.+|+++|+++.  +++.+++|++.|++. +.+...|.    
T Consensus       270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~--al~~A~~n~~~~~~~~v~f~~~d~~~~l  347 (433)
T 1uwv_A          270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA--LVEKGQQNARLNGLQNVTFYHENLEEDV  347 (433)
T ss_dssp             HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHH--HHHHHHHHHHHTTCCSEEEEECCTTSCC
T ss_pred             HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHH--HHHHHHHHHHHcCCCceEEEECCHHHHh
Confidence            46667776665444446779999999999999999998889999999965  999999999999874 55554432    


Q ss_pred             --------CCcEEEecCCCCCccHHHHHHHHH
Q 031506          129 --------PPSHICSRVLQDQSSLRLIIIEVG  152 (158)
Q Consensus       129 --------~fD~Ii~d~iy~~~~~~~ll~tl~  152 (158)
                              +||+|++||+|....  ++++.+.
T Consensus       348 ~~~~~~~~~fD~Vv~dPPr~g~~--~~~~~l~  377 (433)
T 1uwv_A          348 TKQPWAKNGFDKVLLDPARAGAA--GVMQQII  377 (433)
T ss_dssp             SSSGGGTTCCSEEEECCCTTCCH--HHHHHHH
T ss_pred             hhhhhhcCCCCEEEECCCCccHH--HHHHHHH
Confidence                    699999999998643  4555554

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.24  E-value=5.2e-12  Score=102.72  Aligned_cols=85  Identities=16%  Similarity=0.176  Sum_probs=67.5

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------CCcEEEecCCCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------PPSHICSRVLQDQ  141 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------~fD~Ii~d~iy~~  141 (158)
                      .+.+|||+|||+|.+++.+++.+  .+|+++|+++.  +++.+++|+..+++..++...|.      +||+|+++++|+.
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~--~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAP--AVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPPFHD  273 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHH--HHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEEEEECCCCCS
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHhCCCCEEEEccccccccCCeeEEEECCCccc
Confidence            45689999999999999998876  48999999965  99999999999988776665543      7999996666653


Q ss_pred             ------ccHHHHHHHHHHHhc
Q 031506          142 ------SSLRLIIIEVGIILL  156 (158)
Q Consensus       142 ------~~~~~ll~tl~~ll~  156 (158)
                            .....+++.+..+|.
T Consensus       274 g~~~~~~~~~~~l~~~~~~Lk  294 (343)
T 2pjd_A          274 GMQTSLDAAQTLIRGAVRHLN  294 (343)
T ss_dssp             SSHHHHHHHHHHHHHHGGGEE
T ss_pred             CccCCHHHHHHHHHHHHHhCC
Confidence                  335667777666654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.24  E-value=1.1e-11  Score=107.22  Aligned_cols=74  Identities=18%  Similarity=0.166  Sum_probs=63.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC-CcceEEEc----------CCCCcEEE-ecC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRLLMT----------SLPPSHIC-SRV  137 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~~----------d~~fD~Ii-~d~  137 (158)
                      ++.+|||+|||+|+++..+|++|++|+++|.++.  +++.++..+..++ +++++...          +.+||+|+ .++
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~--~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~  143 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQE--NINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV  143 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHH--HHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence            5679999999999999999999999999999975  9999999998776 56666544          23799999 999


Q ss_pred             CCCCccHH
Q 031506          138 LQDQSSLR  145 (158)
Q Consensus       138 iy~~~~~~  145 (158)
                      ++|.++..
T Consensus       144 ~ehv~~~~  151 (569)
T 4azs_A          144 FHHIVHLH  151 (569)
T ss_dssp             HHHHHHHH
T ss_pred             hhcCCCHH
Confidence            99977644

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.23  E-value=4.7e-11  Score=90.92  Aligned_cols=87  Identities=16%  Similarity=0.176  Sum_probs=70.7

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE-ecC
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC-SRV  137 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii-~d~  137 (158)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|+++.  +++.+++++..++ ++.+...|.       +||+|+ ..+
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~  118 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEK--MLEIAKNRFRGNL-KVKYIEADYSKYDFEEKYDMVVSALS  118 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHH--HHHHHHHHTCSCT-TEEEEESCTTTCCCCSCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHH--HHHHHHHhhccCC-CEEEEeCchhccCCCCCceEEEEeCc
Confidence            346789999999999999988887  679999999965  9999999887665 555555543       799999 999


Q ss_pred             CCCCccHH--HHHHHHHHHhcC
Q 031506          138 LQDQSSLR--LIIIEVGIILLS  157 (158)
Q Consensus       138 iy~~~~~~--~ll~tl~~ll~~  157 (158)
                      +++.+...  .+++.+..+|.+
T Consensus       119 l~~~~~~~~~~~l~~~~~~Lkp  140 (234)
T 3dtn_A          119 IHHLEDEDKKELYKRSYSILKE  140 (234)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEE
T ss_pred             cccCCHHHHHHHHHHHHHhcCC
Confidence            98887554  588888888764

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.23  E-value=3.9e-11  Score=99.01  Aligned_cols=85  Identities=14%  Similarity=0.051  Sum_probs=67.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------------CCCcEEEec
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------------LPPSHICSR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------------~~fD~Ii~d  136 (158)
                      ++.+|||+|||+|.+++.+++.+.+|+++|+++.  +++.+++|++.|++. +.+...|            .+||+|++|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~--~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAE--ALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHH--HHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHH--HHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            6779999999999999998888669999999965  999999999999875 5555443            279999999


Q ss_pred             CCCCC----------ccHHHHHHHHHHHhc
Q 031506          137 VLQDQ----------SSLRLIIIEVGIILL  156 (158)
Q Consensus       137 ~iy~~----------~~~~~ll~tl~~ll~  156 (158)
                      |+++.          ..+..++.....+|.
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  316 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLK  316 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEE
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcC
Confidence            98865          334556666555544

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.23  E-value=4.7e-11  Score=87.36  Aligned_cols=100  Identities=14%  Similarity=0.002  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcC----
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTS----  127 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d----  127 (158)
                      ....+..++.......++.+|||+|||+|..++.+++.+.+|+++|+++.  +++.+++|+..++.  .+.+...|    
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~   94 (192)
T 1l3i_A           17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPE--AISTTEMNLQRHGLGDNVTLMEGDAPEA   94 (192)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHH--HHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHH--HHHHHHHHHHHcCCCcceEEEecCHHHh
Confidence            33445555555444557789999999999999999988899999999965  99999999998876  34554443    


Q ss_pred             ----CCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 ----LPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 ----~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                          .+||+|+++..+  .....+++.+..+|.+
T Consensus        95 ~~~~~~~D~v~~~~~~--~~~~~~l~~~~~~l~~  126 (192)
T 1l3i_A           95 LCKIPDIDIAVVGGSG--GELQEILRIIKDKLKP  126 (192)
T ss_dssp             HTTSCCEEEEEESCCT--TCHHHHHHHHHHTEEE
T ss_pred             cccCCCCCEEEECCch--HHHHHHHHHHHHhcCC
Confidence                279999943332  2457888888777653

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.23  E-value=3.5e-11  Score=94.67  Aligned_cols=96  Identities=13%  Similarity=0.139  Sum_probs=73.4

Q ss_pred             HHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-----ceEEEc--------
Q 031506           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-----CRLLMT--------  126 (158)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-----~~~~~~--------  126 (158)
                      +++.......++.+|||+|||+|..++.+++.|.+|+++|+++.  |++.+++|+......     +.+...        
T Consensus        47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (293)
T 3thr_A           47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDK--MLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  124 (293)
T ss_dssp             HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHH--HHHHHHHhhhhcccccccceeeEeecChhhCccc
Confidence            44443333346789999999999999999999999999999965  999999887543321     222222        


Q ss_pred             ---CCCCcEEE-e-cCCCCCcc-------HHHHHHHHHHHhcC
Q 031506          127 ---SLPPSHIC-S-RVLQDQSS-------LRLIIIEVGIILLS  157 (158)
Q Consensus       127 ---d~~fD~Ii-~-d~iy~~~~-------~~~ll~tl~~ll~~  157 (158)
                         +.+||+|+ . +++.+...       ...+++.+..+|.+
T Consensus       125 ~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp  167 (293)
T 3thr_A          125 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP  167 (293)
T ss_dssp             SCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE
T ss_pred             cccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC
Confidence               23899999 6 89988888       89999999888764

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.22  E-value=6.4e-11  Score=86.20  Aligned_cols=93  Identities=9%  Similarity=-0.041  Sum_probs=67.3

Q ss_pred             HHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcce-EEEcC--------
Q 031506           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR-LLMTS--------  127 (158)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~-~~~~d--------  127 (158)
                      ...+.......++.+|||+|||+|..++.+++.  +.+|+++|+++.  +++.+++|+..++...+ ....|        
T Consensus        14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~   91 (178)
T 3hm2_A           14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEE--RRERILSNAINLGVSDRIAVQQGAPRAFDDV   91 (178)
T ss_dssp             HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHH--HHHHHHHHHHTTTCTTSEEEECCTTGGGGGC
T ss_pred             HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHH--HHHHHHHHHHHhCCCCCEEEecchHhhhhcc
Confidence            344444333446779999999999999988877  569999999965  99999999998876522 33222        


Q ss_pred             -CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 -LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 -~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                       .+||+|+ ..++++    ..+++.+..+|.+
T Consensus        92 ~~~~D~i~~~~~~~~----~~~l~~~~~~L~~  119 (178)
T 3hm2_A           92 PDNPDVIFIGGGLTA----PGVFAAAWKRLPV  119 (178)
T ss_dssp             CSCCSEEEECC-TTC----TTHHHHHHHTCCT
T ss_pred             CCCCCEEEECCcccH----HHHHHHHHHhcCC
Confidence             3799999 777766    5566666666554

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.22  E-value=2.6e-11  Score=93.74  Aligned_cols=102  Identities=14%  Similarity=0.097  Sum_probs=76.9

Q ss_pred             eEecchHH--HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHHHcCCcceEEE
Q 031506           49 LFVWPCSV--ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLM  125 (158)
Q Consensus        49 ~~vW~~~~--~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~  125 (158)
                      +.-|...+  .+++.+.     .+|.+|||+|||+|..+..+++.+ .+|+++|+++.  +++.++++...++..+++..
T Consensus        42 m~~we~~~m~~~a~~~~-----~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~--~~~~a~~~~~~~~~~~~~~~  114 (236)
T 3orh_A           42 MERWETPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDG--VFQRLRDWAPRQTHKVIPLK  114 (236)
T ss_dssp             EEGGGHHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHH--HHHHHHHHGGGCSSEEEEEE
T ss_pred             HHHHHHHHHHHHHHhhc-----cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHH--HHHHHHHHHhhCCCceEEEe
Confidence            45687653  3444332     367899999999999999888764 58999999964  99999999988887777655


Q ss_pred             cC----------CCCcEEEecCC------CCCccHHHHHHHHHHHhcC
Q 031506          126 TS----------LPPSHICSRVL------QDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       126 ~d----------~~fD~Ii~d~i------y~~~~~~~ll~tl~~ll~~  157 (158)
                      .+          .+||.|+.|++      .+..+.+.+++.+..+|++
T Consensus       115 ~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkP  162 (236)
T 3orh_A          115 GLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP  162 (236)
T ss_dssp             SCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred             ehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCC
Confidence            43          27999986654      3455567888888888875

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.22  E-value=2.4e-11  Score=91.28  Aligned_cols=86  Identities=17%  Similarity=0.129  Sum_probs=67.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEE--EcCCCCcEEE-ecCCCCCc--cH
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL--MTSLPPSHIC-SRVLQDQS--SL  144 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~--~~d~~fD~Ii-~d~iy~~~--~~  144 (158)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.++++.........+.  ..+.+||+|+ ..++++..  ..
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~  120 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPE--LAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDEL  120 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHHHH
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHH--HHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHHHH
Confidence            5779999999999999999999999999999965  9999998872211111111  1234899999 89998887  77


Q ss_pred             HHHHHHHHHHhcC
Q 031506          145 RLIIIEVGIILLS  157 (158)
Q Consensus       145 ~~ll~tl~~ll~~  157 (158)
                      ..+++.+..+|.+
T Consensus       121 ~~~l~~~~~~Lkp  133 (211)
T 3e23_A          121 ADVLKLIWRALKP  133 (211)
T ss_dssp             HHHHHHHHHHEEE
T ss_pred             HHHHHHHHHhcCC
Confidence            8899999888764

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.22  E-value=6.8e-11  Score=88.17  Aligned_cols=81  Identities=11%  Similarity=0.107  Sum_probs=66.7

Q ss_pred             CCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCcEEE-ecCCCCC
Q 031506           71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPSHIC-SRVLQDQ  141 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD~Ii-~d~iy~~  141 (158)
                      +.+|||+|||+|..+..+++.|.+|+++|+++.  |++.++++..    ++.+...        +.+||+|+ ..++++.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~--~~~~a~~~~~----~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATR--LVELARQTHP----SVTFHHGTITDLSDSPKRWAGLLAWYSLIHM  115 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHH--HHHHHHHHCT----TSEEECCCGGGGGGSCCCEEEEEEESSSTTC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHH--HHHHHHHhCC----CCeEEeCcccccccCCCCeEEEEehhhHhcC
Confidence            679999999999999999999999999999965  9998888732    3444333        23899999 8999888


Q ss_pred             c--cHHHHHHHHHHHhcC
Q 031506          142 S--SLRLIIIEVGIILLS  157 (158)
Q Consensus       142 ~--~~~~ll~tl~~ll~~  157 (158)
                      .  ....+++.+..+|.+
T Consensus       116 ~~~~~~~~l~~~~~~L~p  133 (203)
T 3h2b_A          116 GPGELPDALVALRMAVED  133 (203)
T ss_dssp             CTTTHHHHHHHHHHTEEE
T ss_pred             CHHHHHHHHHHHHHHcCC
Confidence            5  889999999888764

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.21  E-value=7.7e-11  Score=93.37  Aligned_cols=96  Identities=14%  Similarity=0.018  Sum_probs=75.2

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHh---hcCCEEEEEecCChHHHHHHHHHHHHHc---CCcceEEEc-----
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAA---KVGSNVTLTDDSNRIEVLKNMRRVCEMN---KLNCRLLMT-----  126 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a---~~g~~v~~tD~~~~~~~l~~~~~n~~~n---~~~~~~~~~-----  126 (158)
                      +.+.+..... .++.+|||+|||+|..+..++   ..+.+|+++|+++.  +++.++++++.+   ..++.+...     
T Consensus        25 ~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~~v~~~~~d~~~~  101 (299)
T 3g5t_A           25 FYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSAT--MIKTAEVIKEGSPDTYKNVSFKISSSDDF  101 (299)
T ss_dssp             HHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHH--HHHHHHHHHHHCC-CCTTEEEEECCTTCC
T ss_pred             HHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHHhccCCCCceEEEEcCHHhC
Confidence            4444444322 367899999999999999888   45679999999965  999999999886   334555443     


Q ss_pred             ---C------CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          127 ---S------LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       127 ---d------~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                         +      .+||+|+ +.++++. +...+++.+..+|.+
T Consensus       102 ~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~Lkp  141 (299)
T 3g5t_A          102 KFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRK  141 (299)
T ss_dssp             GGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEE
T ss_pred             CccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCC
Confidence               2      3699999 9999999 999999999988764

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.21  E-value=4.1e-11  Score=90.32  Aligned_cols=84  Identities=15%  Similarity=0.065  Sum_probs=68.5

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------CCCcEEE-ecCCCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------LPPSHIC-SRVLQDQ  141 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------~~fD~Ii-~d~iy~~  141 (158)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.++++..   .++.+...|       .+||+|+ ..++++.
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~---~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~  119 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSRE--MRMIAKEKLP---KEFSITEGDFLSFEVPTSIDTIVSTYAFHHL  119 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHH--HHHHHHHHSC---TTCCEESCCSSSCCCCSCCSEEEEESCGGGS
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHH--HHHHHHHhCC---CceEEEeCChhhcCCCCCeEEEEECcchhcC
Confidence            5779999999999999999999999999999965  9999888765   123333332       3799999 9999998


Q ss_pred             ccHHH--HHHHHHHHhcCC
Q 031506          142 SSLRL--IIIEVGIILLSS  158 (158)
Q Consensus       142 ~~~~~--ll~tl~~ll~~~  158 (158)
                      +....  +++.+..+|.++
T Consensus       120 ~~~~~~~~l~~~~~~Lkpg  138 (220)
T 3hnr_A          120 TDDEKNVAIAKYSQLLNKG  138 (220)
T ss_dssp             CHHHHHHHHHHHHHHSCTT
T ss_pred             ChHHHHHHHHHHHHhcCCC
Confidence            88766  899998888653

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.19  E-value=3.9e-11  Score=99.31  Aligned_cols=70  Identities=17%  Similarity=0.145  Sum_probs=60.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC------------CCCcEEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS------------LPPSHIC  134 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d------------~~fD~Ii  134 (158)
                      ++.+|||+|||+|.+++.+++.|+ +|+++|+++.  +++.+++|++.|++.  +.+...|            .+||+|+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~--~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi  294 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPR--AIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  294 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence            678999999999999999999876 9999999965  999999999999874  5555443            2799999


Q ss_pred             ecCCCCC
Q 031506          135 SRVLQDQ  141 (158)
Q Consensus       135 ~d~iy~~  141 (158)
                      +||+++.
T Consensus       295 ~dpP~~~  301 (396)
T 2as0_A          295 LDPPAFV  301 (396)
T ss_dssp             ECCCCSC
T ss_pred             ECCCCCC
Confidence            9998876

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.19  E-value=3.6e-11  Score=92.27  Aligned_cols=86  Identities=13%  Similarity=0.011  Sum_probs=68.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcC-CcceEEEcCC--------CCcEEE-ecCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNK-LNCRLLMTSL--------PPSHIC-SRVL  138 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~~d~--------~fD~Ii-~d~i  138 (158)
                      ++.+|||+|||+|..+..+++.+. +|+++|+++.  +++.+++++..++ ..+.+...|.        +||+|+ ..++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  156 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITED--FLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI  156 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHH--HHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHH--HHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence            578999999999999998887754 9999999965  9999999987663 2344444332        699999 8898


Q ss_pred             CCCcc--HHHHHHHHHHHhcC
Q 031506          139 QDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       139 y~~~~--~~~ll~tl~~ll~~  157 (158)
                      ++.+.  ...+++.+..+|.+
T Consensus       157 ~~~~~~~~~~~l~~~~~~Lkp  177 (241)
T 2ex4_A          157 GHLTDQHLAEFLRRCKGSLRP  177 (241)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE
T ss_pred             hhCCHHHHHHHHHHHHHhcCC
Confidence            88776  55889888888764

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.18  E-value=9.2e-11  Score=89.97  Aligned_cols=85  Identities=11%  Similarity=0.023  Sum_probs=66.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEE-----cCCCCcEEE-ecCCCCCc-
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLM-----TSLPPSHIC-SRVLQDQS-  142 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~-----~d~~fD~Ii-~d~iy~~~-  142 (158)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.+++++...  ..++..     .+.+||+|+ ..++++.. 
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~--~~~~a~~~~~~~--~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~  116 (240)
T 3dli_A           41 GCRRVLDIGCGRGEFLELCKEEGIESIGVDINED--MIKFCEGKFNVV--KSDAIEYLKSLPDKYLDGVMISHFVEHLDP  116 (240)
T ss_dssp             TCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHH--HHHHHHTTSEEE--CSCHHHHHHTSCTTCBSEEEEESCGGGSCG
T ss_pred             CCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHH--HHHHHHhhccee--eccHHHHhhhcCCCCeeEEEECCchhhCCc
Confidence            5689999999999999999999999999999965  898888771110  111111     134899999 99999888 


Q ss_pred             -cHHHHHHHHHHHhcCC
Q 031506          143 -SLRLIIIEVGIILLSS  158 (158)
Q Consensus       143 -~~~~ll~tl~~ll~~~  158 (158)
                       ....+++.+..+|.++
T Consensus       117 ~~~~~~l~~~~~~Lkpg  133 (240)
T 3dli_A          117 ERLFELLSLCYSKMKYS  133 (240)
T ss_dssp             GGHHHHHHHHHHHBCTT
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence             6699999999988753

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.18  E-value=6.2e-11  Score=91.05  Aligned_cols=87  Identities=10%  Similarity=0.010  Sum_probs=68.9

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecC
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRV  137 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~  137 (158)
                      ..++.+|||+|||+|..+..+++.+. +|+++|+++.  +++.+++++..+ ..+.+...|        .+||+|+ ..+
T Consensus        91 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~--~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~  167 (254)
T 1xtp_A           91 GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKH--MLEEAKRELAGM-PVGKFILASMETATLPPNTYDLIVIQWT  167 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHH--HHHHHHHHTTTS-SEEEEEESCGGGCCCCSSCEEEEEEESC
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHH--HHHHHHHHhccC-CceEEEEccHHHCCCCCCCeEEEEEcch
Confidence            34678999999999999998887754 7999999965  999999887654 234444432        2799999 999


Q ss_pred             CCCC--ccHHHHHHHHHHHhcC
Q 031506          138 LQDQ--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       138 iy~~--~~~~~ll~tl~~ll~~  157 (158)
                      +++.  +....+++.+..+|.+
T Consensus       168 l~~~~~~~~~~~l~~~~~~Lkp  189 (254)
T 1xtp_A          168 AIYLTDADFVKFFKHCQQALTP  189 (254)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEE
T ss_pred             hhhCCHHHHHHHHHHHHHhcCC
Confidence            9988  5588899998888764

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.18  E-value=1.4e-10  Score=93.93  Aligned_cols=96  Identities=22%  Similarity=0.285  Sum_probs=72.3

Q ss_pred             HHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------
Q 031506           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------  127 (158)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------  127 (158)
                      .+.+.+.....++++|||+|||+|.+++.+++.|+ +|+++|.+ .  |++.+++|++.|++.  +.+...|        
T Consensus        27 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  103 (328)
T 1g6q_1           27 RNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-S--IIEMAKELVELNGFSDKITLLRGKLEDVHLPF  103 (328)
T ss_dssp             HHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-T--HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS
T ss_pred             HHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-H--HHHHHHHHHHHcCCCCCEEEEECchhhccCCC
Confidence            33443333345678999999999999999999887 99999999 4  899999999998874  4444443        


Q ss_pred             CCCcEEEecCC----CCCccHHHHHHHHHHHhcC
Q 031506          128 LPPSHICSRVL----QDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 ~~fD~Ii~d~i----y~~~~~~~ll~tl~~ll~~  157 (158)
                      .+||+|+++++    .+....+.++..+..+|.+
T Consensus       104 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp  137 (328)
T 1g6q_1          104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVE  137 (328)
T ss_dssp             SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEE
T ss_pred             CcccEEEEeCchhhcccHHHHHHHHHHHHhhcCC
Confidence            27999996543    3456678888888777754

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.18  E-value=2.1e-10  Score=96.26  Aligned_cols=94  Identities=18%  Similarity=0.177  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----  128 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----  128 (158)
                      .+..|.+++..   ..++.+|||+|||+|.+++.+++.+.+|+++|+++.  +++.+++|++.|++.+.+...|.     
T Consensus       277 ~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~--ai~~A~~n~~~ngl~v~~~~~d~~~~~~  351 (425)
T 2jjq_A          277 QAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEF--AIEMARRNVEINNVDAEFEVASDREVSV  351 (425)
T ss_dssp             HHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHHTCCEEEEECCTTTCCC
T ss_pred             HHHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHHcCCcEEEEECChHHcCc
Confidence            45566666655   345779999999999999999998889999999965  99999999999987755555543     


Q ss_pred             -CCcEEEecCCCCCccHHHHHHHHHH
Q 031506          129 -PPSHICSRVLQDQSSLRLIIIEVGI  153 (158)
Q Consensus       129 -~fD~Ii~d~iy~~~~~~~ll~tl~~  153 (158)
                       +||+|++||++... .+.+++.+..
T Consensus       352 ~~fD~Vv~dPPr~g~-~~~~~~~l~~  376 (425)
T 2jjq_A          352 KGFDTVIVDPPRAGL-HPRLVKRLNR  376 (425)
T ss_dssp             TTCSEEEECCCTTCS-CHHHHHHHHH
T ss_pred             cCCCEEEEcCCccch-HHHHHHHHHh
Confidence             69999999987532 3445555543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.18  E-value=9.2e-11  Score=90.31  Aligned_cols=90  Identities=14%  Similarity=0.017  Sum_probs=70.4

Q ss_pred             HHhcccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------CCCcE
Q 031506           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------LPPSH  132 (158)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------~~fD~  132 (158)
                      +.......++.+|||+|||+|..+..+++.  +.+|+++|+++.  |++.++++.    .++.+...|       .+||+
T Consensus        25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~--~~~~a~~~~----~~~~~~~~d~~~~~~~~~fD~   98 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDD--MLEKAADRL----PNTNFGKADLATWKPAQKADL   98 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHH--HHHHHHHHS----TTSEEEECCTTTCCCSSCEEE
T ss_pred             HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHhC----CCcEEEECChhhcCccCCcCE
Confidence            333333446789999999999999988887  789999999965  999888872    123444332       37999


Q ss_pred             EE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          133 IC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       133 Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      |+ +.++++.++...+++.+..+|.+
T Consensus        99 v~~~~~l~~~~~~~~~l~~~~~~L~p  124 (259)
T 2p35_A           99 LYANAVFQWVPDHLAVLSQLMDQLES  124 (259)
T ss_dssp             EEEESCGGGSTTHHHHHHHHGGGEEE
T ss_pred             EEEeCchhhCCCHHHHHHHHHHhcCC
Confidence            99 99999999999999998887764

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.17  E-value=9.1e-11  Score=88.02  Aligned_cols=83  Identities=13%  Similarity=0.103  Sum_probs=63.0

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC--------C
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS--------L  128 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d--------~  128 (158)
                      +...+.......++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.+++|+..++.. +.+...|        .
T Consensus        65 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  142 (210)
T 3lbf_A           65 MVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKG--LQWQARRRLKNLDLHNVSTRHGDGWQGWQARA  142 (210)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHH--HHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHH--HHHHHHHHHHHcCCCceEEEECCcccCCccCC
Confidence            3333443333457789999999999999999999899999999965  999999999987754 4555443        2


Q ss_pred             CCcEEE-ecCCCCCc
Q 031506          129 PPSHIC-SRVLQDQS  142 (158)
Q Consensus       129 ~fD~Ii-~d~iy~~~  142 (158)
                      +||+|+ ..++.+..
T Consensus       143 ~~D~i~~~~~~~~~~  157 (210)
T 3lbf_A          143 PFDAIIVTAAPPEIP  157 (210)
T ss_dssp             CEEEEEESSBCSSCC
T ss_pred             CccEEEEccchhhhh
Confidence            799999 55655544

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.17  E-value=7.4e-11  Score=91.33  Aligned_cols=58  Identities=9%  Similarity=-0.063  Sum_probs=44.6

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc----CCEEEEEecCChHHHHHHHHHHHHHc
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMN  117 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~----g~~v~~tD~~~~~~~l~~~~~n~~~n  117 (158)
                      +.+.+.......++.+|||+|||+|.+++.+++.    +.+|+++|+++.  +++.+++|+..+
T Consensus        39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~--~l~~A~~~~~~~  100 (250)
T 1o9g_A           39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPA--PLELAAKNLALL  100 (250)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHH--HHHHHHHHHHTT
T ss_pred             HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHH--HHHHHHHHHHHh
Confidence            3344443322235679999999999999988876    469999999965  999999998766

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.17  E-value=4.9e-11  Score=86.57  Aligned_cols=82  Identities=17%  Similarity=0.145  Sum_probs=67.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-----CCCCcEEE-ecCCCCCcc
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-----SLPPSHIC-SRVLQDQSS  143 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-----d~~fD~Ii-~d~iy~~~~  143 (158)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.++++    ..++.+...     +.+||+|+ +.++++.++
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~----~~~v~~~~~d~~~~~~~~D~v~~~~~l~~~~~   90 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVI--ALKEVKEK----FDSVITLSDPKEIPDNSVDFILFANSFHDMDD   90 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHH--HHHHHHHH----CTTSEEESSGGGSCTTCEEEEEEESCSTTCSC
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHH--HHHHHHHh----CCCcEEEeCCCCCCCCceEEEEEccchhcccC
Confidence            5679999999999999999988779999999965  99988887    113444333     23799999 999999999


Q ss_pred             HHHHHHHHHHHhcC
Q 031506          144 LRLIIIEVGIILLS  157 (158)
Q Consensus       144 ~~~ll~tl~~ll~~  157 (158)
                      ...+++.+..+|.+
T Consensus        91 ~~~~l~~~~~~L~p  104 (170)
T 3i9f_A           91 KQHVISEVKRILKD  104 (170)
T ss_dssp             HHHHHHHHHHHEEE
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999988764

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.17  E-value=6.5e-11  Score=88.02  Aligned_cols=87  Identities=15%  Similarity=0.118  Sum_probs=65.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcC---------CCCcEEE
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTS---------LPPSHIC  134 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d---------~~fD~Ii  134 (158)
                      .++.+|||+|||+|..++.+++. +  .+|+++|+++.  +++.+++|++.+++  ++.+...|         .+||+|+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDK--AIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHH--HHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence            35779999999999999988776 2  49999999965  99999999999876  34555443         2799999


Q ss_pred             ecCCCCC----------ccHHHHHHHHHHHhcC
Q 031506          135 SRVLQDQ----------SSLRLIIIEVGIILLS  157 (158)
Q Consensus       135 ~d~iy~~----------~~~~~ll~tl~~ll~~  157 (158)
                      +++.|.+          .....+++.+..+|.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~  131 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVT  131 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcC
Confidence            6666632          1334677777776653

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.17  E-value=4.6e-11  Score=93.72  Aligned_cols=83  Identities=19%  Similarity=0.228  Sum_probs=68.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------CCCcEEE-ecCCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------LPPSHIC-SRVLQD  140 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------~~fD~Ii-~d~iy~  140 (158)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.  |++.++++.  .  ++.+...|       .+||+|+ ..++++
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~--~~~~a~~~~--~--~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  129 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAAT--MIEKARQNY--P--HLHFDVADARNFRVDKPLDAVFSNAMLHW  129 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHHHC--T--TSCEEECCTTTCCCSSCEEEEEEESCGGG
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHH--HHHHHHhhC--C--CCEEEECChhhCCcCCCcCEEEEcchhhh
Confidence            36779999999999999999888889999999965  999888775  1  23333332       3799999 999999


Q ss_pred             CccHHHHHHHHHHHhcC
Q 031506          141 QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       141 ~~~~~~ll~tl~~ll~~  157 (158)
                      ..+.+.+++.+..+|.+
T Consensus       130 ~~d~~~~l~~~~~~Lkp  146 (279)
T 3ccf_A          130 VKEPEAAIASIHQALKS  146 (279)
T ss_dssp             CSCHHHHHHHHHHHEEE
T ss_pred             CcCHHHHHHHHHHhcCC
Confidence            89999999999988764

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.17  E-value=3.2e-11  Score=94.89  Aligned_cols=91  Identities=11%  Similarity=0.092  Sum_probs=69.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CC
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SL  128 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~  128 (158)
                      .+.++|.....  .+.+|||+|||+|..+..+++.+.+|+++|+++.  |++.++++     .++.+...        +.
T Consensus        28 ~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~--ml~~a~~~-----~~v~~~~~~~e~~~~~~~   98 (257)
T 4hg2_A           28 ALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEA--QIRQALRH-----PRVTYAVAPAEDTGLPPA   98 (257)
T ss_dssp             HHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHH--HHHTCCCC-----TTEEEEECCTTCCCCCSS
T ss_pred             HHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHH--hhhhhhhc-----CCceeehhhhhhhcccCC
Confidence            35577766432  3568999999999999999999999999999965  88766532     23444433        23


Q ss_pred             CCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          129 PPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       129 ~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .||+|+ +.++++. +.+.+++.+..+|++
T Consensus        99 sfD~v~~~~~~h~~-~~~~~~~e~~rvLkp  127 (257)
T 4hg2_A           99 SVDVAIAAQAMHWF-DLDRFWAELRRVARP  127 (257)
T ss_dssp             CEEEEEECSCCTTC-CHHHHHHHHHHHEEE
T ss_pred             cccEEEEeeehhHh-hHHHHHHHHHHHcCC
Confidence            899999 8888776 478899999988865

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.17  E-value=1.7e-10  Score=89.87  Aligned_cols=90  Identities=16%  Similarity=0.086  Sum_probs=71.6

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCCh----HHHHHHHHHHHHHcCC--cceEEEcC----------
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR----IEVLKNMRRVCEMNKL--NCRLLMTS----------  127 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~----~~~l~~~~~n~~~n~~--~~~~~~~d----------  127 (158)
                      ...++.+|||+|||+|..+..+++. |  .+|+++|+++.    +++++.+++++..+++  ++.+...|          
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  119 (275)
T 3bkx_A           40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA  119 (275)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence            3447789999999999999988877 4  69999999962    1278999999987765  34555444          


Q ss_pred             -CCCcEEE-ecCCCCCccHHHHHHHHHHHhc
Q 031506          128 -LPPSHIC-SRVLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       128 -~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~  156 (158)
                       .+||+|+ ..++++..+...+++.+..++.
T Consensus       120 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~  150 (275)
T 3bkx_A          120 DQHFDRVVLAHSLWYFASANALALLFKNMAA  150 (275)
T ss_dssp             TCCCSEEEEESCGGGSSCHHHHHHHHHHHTT
T ss_pred             CCCEEEEEEccchhhCCCHHHHHHHHHHHhC
Confidence             2699999 9999999888888888877765

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.17  E-value=1.5e-10  Score=87.64  Aligned_cols=84  Identities=15%  Similarity=0.071  Sum_probs=67.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-------------CCCc
Q 031506           70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-------------LPPS  131 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-------------~~fD  131 (158)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|+..+++.  +++...|             .+||
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEK--HADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            5789999999999999988887   679999999965  999999999988764  4554442             2599


Q ss_pred             EEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          132 HICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       132 ~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +|+.|..  ...+..+++.+..+|.+
T Consensus       136 ~v~~d~~--~~~~~~~l~~~~~~L~p  159 (223)
T 3duw_A          136 FIFIDAD--KQNNPAYFEWALKLSRP  159 (223)
T ss_dssp             EEEECSC--GGGHHHHHHHHHHTCCT
T ss_pred             EEEEcCC--cHHHHHHHHHHHHhcCC
Confidence            9996654  55667888888777765

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.17  E-value=1.3e-11  Score=96.59  Aligned_cols=88  Identities=14%  Similarity=0.241  Sum_probs=65.8

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--------------------------
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--------------------------  120 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--------------------------  120 (158)
                      ..++.+|||||||+|+.++.+++.|+ +|+++|+++.  |++.++++++.+...                          
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~--~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDR--NREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  130 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHH--HHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHH--HHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence            45778999999999999888888887 7999999975  999999887654211                          


Q ss_pred             ----ce-EEEcC------------CCCcEEE-ecCCCCC----ccHHHHHHHHHHHhcC
Q 031506          121 ----CR-LLMTS------------LPPSHIC-SRVLQDQ----SSLRLIIIEVGIILLS  157 (158)
Q Consensus       121 ----~~-~~~~d------------~~fD~Ii-~d~iy~~----~~~~~ll~tl~~ll~~  157 (158)
                          +. +...|            .+||+|+ +.++.+.    +.+..+++.++.+|++
T Consensus       131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP  189 (263)
T 2a14_A          131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP  189 (263)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE
T ss_pred             HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC
Confidence                11 33322            2699999 8887652    5566788888887765

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.16  E-value=9e-11  Score=91.70  Aligned_cols=84  Identities=21%  Similarity=0.265  Sum_probs=65.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----------CCCcEEE
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-----------LPPSHIC  134 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-----------~~fD~Ii  134 (158)
                      .++.+|||+|||+|.+++.++..  +.+|+++|.++.  +++.+++|++.+++. +.+...|           .+||+|+
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRK--KVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV  156 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHH--HHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence            35789999999999999988876  469999999975  999999999998874 5555432           3799999


Q ss_pred             ecCCCCCccHHHHHHHHHHHhcC
Q 031506          135 SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       135 ~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +..+   ..++.+++.+..+|.+
T Consensus       157 s~a~---~~~~~ll~~~~~~Lkp  176 (249)
T 3g89_A          157 ARAV---APLCVLSELLLPFLEV  176 (249)
T ss_dssp             EESS---CCHHHHHHHHGGGEEE
T ss_pred             ECCc---CCHHHHHHHHHHHcCC
Confidence            5443   4567788877766653

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.16  E-value=2.4e-10  Score=93.23  Aligned_cols=96  Identities=15%  Similarity=0.194  Sum_probs=69.1

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC------
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL------  128 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~------  128 (158)
                      ..+.+.+.....++.+|||+|||+|.+++.+++.|+ +|+++|.++   +++.++++++.|++.  +.+...|.      
T Consensus        38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~---~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~  114 (348)
T 2y1w_A           38 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST---MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP  114 (348)
T ss_dssp             HHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST---HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred             HHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH---HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC
Confidence            334455544456788999999999999999999876 999999994   778999999998863  55554432      


Q ss_pred             -CCcEEEec-CCCCC--ccHHHHHHHHHHHhc
Q 031506          129 -PPSHICSR-VLQDQ--SSLRLIIIEVGIILL  156 (158)
Q Consensus       129 -~fD~Ii~d-~iy~~--~~~~~ll~tl~~ll~  156 (158)
                       +||+|+++ +.|+.  +.....+..+..+|.
T Consensus       115 ~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lk  146 (348)
T 2y1w_A          115 EQVDIIISEPMGYMLFNERMLESYLHAKKYLK  146 (348)
T ss_dssp             SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEE
T ss_pred             CceeEEEEeCchhcCChHHHHHHHHHHHhhcC
Confidence             79999955 44543  344455555555443

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.16  E-value=1.3e-10  Score=86.79  Aligned_cols=80  Identities=15%  Similarity=0.165  Sum_probs=57.9

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-----CCCcEEEecCCCCC
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-----LPPSHICSRVLQDQ  141 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-----~~fD~Ii~d~iy~~  141 (158)
                      ..++.+|||+|||+|.+++.+++.+. +|+++|+++.  +++.+++|+.    ++++...|     .+||+|+++++|+.
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~--~~~~a~~~~~----~~~~~~~d~~~~~~~~D~v~~~~p~~~  122 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPD--AIETAKRNCG----GVNFMVADVSEISGKYDTWIMNPPFGS  122 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHH--HHHHHHHHCT----TSEEEECCGGGCCCCEEEEEECCCC--
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHH--HHHHHHHhcC----CCEEEECcHHHCCCCeeEEEECCCchh
Confidence            34678999999999999999988876 7999999965  9999999876    34444443     37999997777665


Q ss_pred             cc---HHHHHHHHHH
Q 031506          142 SS---LRLIIIEVGI  153 (158)
Q Consensus       142 ~~---~~~ll~tl~~  153 (158)
                      ..   ...+++.+..
T Consensus       123 ~~~~~~~~~l~~~~~  137 (200)
T 1ne2_A          123 VVKHSDRAFIDKAFE  137 (200)
T ss_dssp             -----CHHHHHHHHH
T ss_pred             ccCchhHHHHHHHHH
Confidence            43   2344444443

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.16  E-value=7.6e-11  Score=88.55  Aligned_cols=81  Identities=15%  Similarity=0.203  Sum_probs=65.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc------------CCCCcEEE-e
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT------------SLPPSHIC-S  135 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~------------d~~fD~Ii-~  135 (158)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.++++   .  ...+...            +.+||+|+ +
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~---~--~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  123 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRT--LVDAARAA---G--AGEVHLASYAQLAEAKVPVGKDYDLICAN  123 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHH--HHHHHHHT---C--SSCEEECCHHHHHTTCSCCCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHH--HHHHHHHh---c--ccccchhhHHhhcccccccCCCccEEEEC
Confidence            35689999999999999999999999999999965  99988887   2  2222221            12599999 8


Q ss_pred             cCCCCCccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .+++ ......+++.+..+|.+
T Consensus       124 ~~l~-~~~~~~~l~~~~~~L~p  144 (227)
T 3e8s_A          124 FALL-HQDIIELLSAMRTLLVP  144 (227)
T ss_dssp             SCCC-SSCCHHHHHHHHHTEEE
T ss_pred             chhh-hhhHHHHHHHHHHHhCC
Confidence            8888 88889999999988764

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.15  E-value=2.1e-10  Score=89.11  Aligned_cols=85  Identities=8%  Similarity=0.008  Sum_probs=68.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-----------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-----------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-----------~~fD~I  133 (158)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+++.  +++...|           .+||+|
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAH--HAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHH--HHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            5789999999999999988886   679999999965  999999999988765  4554432           179999


Q ss_pred             EecCCCCCccHHHHHHHHHHHhcCC
Q 031506          134 CSRVLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       134 i~d~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                      ++|.  .......+++.+..+|.++
T Consensus       141 ~~d~--~~~~~~~~l~~~~~~LkpG  163 (248)
T 3tfw_A          141 FIDA--DKPNNPHYLRWALRYSRPG  163 (248)
T ss_dssp             EECS--CGGGHHHHHHHHHHTCCTT
T ss_pred             EECC--chHHHHHHHHHHHHhcCCC
Confidence            9665  3566778888888777653

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.15  E-value=1.7e-10  Score=95.61  Aligned_cols=100  Identities=15%  Similarity=0.093  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC----------------------------------------CE
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG----------------------------------------SN   94 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g----------------------------------------~~   94 (158)
                      ...|+..|.......++.+|||.|||+|.+.+.++..+                                        .+
T Consensus       180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            45577777765555567899999999999999887764                                        36


Q ss_pred             EEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEEecCCCCC-----ccHHHHHHHHHHHhc
Q 031506           95 VTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHICSRVLQDQ-----SSLRLIIIEVGIILL  156 (158)
Q Consensus        95 v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii~d~iy~~-----~~~~~ll~tl~~ll~  156 (158)
                      |+++|+++.  |++.+++|+..+++.  +.+...|.       +||+|++||+|..     +....+.+.+...|.
T Consensus       260 V~GvDid~~--ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk  333 (385)
T 3ldu_A          260 IYGYDIDEE--SIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFR  333 (385)
T ss_dssp             EEEEESCHH--HHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCHH--HHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHh
Confidence            999999965  999999999999875  55555542       7999999999974     334556666655543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.15  E-value=6e-11  Score=94.65  Aligned_cols=75  Identities=16%  Similarity=0.088  Sum_probs=60.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcCC-------CCcEEEecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTSL-------PPSHICSRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d~-------~fD~Ii~d~iy  139 (158)
                      ++.+|||+|||+|.+++.+|+.|+ +|+++|+++.  +++.+++|++.|++..  .+...|.       .||.|+.++++
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~--a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~  202 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPY--TFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  202 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHH--HHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC
Confidence            688999999999999999999885 9999999965  9999999999999864  4444443       79999955554


Q ss_pred             C-CccHHH
Q 031506          140 D-QSSLRL  146 (158)
Q Consensus       140 ~-~~~~~~  146 (158)
                      . .+.++.
T Consensus       203 ~~~~~l~~  210 (278)
T 3k6r_A          203 RTHEFIPK  210 (278)
T ss_dssp             SGGGGHHH
T ss_pred             cHHHHHHH
Confidence            4 333333

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.15  E-value=9.6e-11  Score=90.89  Aligned_cols=82  Identities=16%  Similarity=0.071  Sum_probs=65.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------CCCcEEE-ec-CCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------LPPSHIC-SR-VLQD  140 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------~~fD~Ii-~d-~iy~  140 (158)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.++++..    ++.+...|       .+||+|+ .. ++++
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~--~~~~a~~~~~----~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  123 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSAD--MLAIARRRNP----DAVLHHGDMRDFSLGRRFSAVTCMFSSIGH  123 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHH--HHHHHHHHCT----TSEEEECCTTTCCCSCCEEEEEECTTGGGG
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHH--HHHHHHhhCC----CCEEEECChHHCCccCCcCEEEEcCchhhh
Confidence            4679999999999999999999999999999965  9999888754    34444443       3799999 65 8887


Q ss_pred             Cc---cHHHHHHHHHHHhcC
Q 031506          141 QS---SLRLIIIEVGIILLS  157 (158)
Q Consensus       141 ~~---~~~~ll~tl~~ll~~  157 (158)
                      ..   ....+++.+..+|.+
T Consensus       124 ~~~~~~~~~~l~~~~~~L~p  143 (263)
T 3pfg_A          124 LAGQAELDAALERFAAHVLP  143 (263)
T ss_dssp             SCHHHHHHHHHHHHHHTEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCC
Confidence            74   566778888777654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.15  E-value=1.5e-10  Score=86.62  Aligned_cols=83  Identities=16%  Similarity=0.108  Sum_probs=66.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC-CcceEEEcC-------CCCcEEE-ecCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRLLMTS-------LPPSHIC-SRVLQ  139 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~~d-------~~fD~Ii-~d~iy  139 (158)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.+++    ++ .++.+...|       .+||+|+ +.+++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~--~~~~a~~----~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~  118 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLADRVTALDGSAE--MIAEAGR----HGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLA  118 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHH--HHHHHGG----GCCTTEEEEECCTTSCCCSSCEEEEEEESCGG
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHH--HHHHHHh----cCCCCeEEEecccccCCCCCceeEEEEechhh
Confidence            35679999999999999999998999999999965  8988877    33 234554443       3899999 99998


Q ss_pred             CCcc--HHHHHHHHHHHhcC
Q 031506          140 DQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       140 ~~~~--~~~ll~tl~~ll~~  157 (158)
                      +.+.  ...+++.+..+|.+
T Consensus       119 ~~~~~~~~~~l~~~~~~L~p  138 (218)
T 3ou2_A          119 HVPDDRFEAFWESVRSAVAP  138 (218)
T ss_dssp             GSCHHHHHHHHHHHHHHEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCC
Confidence            8877  48888888887764

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.15  E-value=6.4e-11  Score=88.57  Aligned_cols=82  Identities=23%  Similarity=0.350  Sum_probs=64.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC-------CCcEEEecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL-------PPSHICSRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~-------~fD~Ii~d~iy  139 (158)
                      ++.+|||+|||+|..++.+++.  +.+|+++|+++.  +++.+++|+..+++. +.+...|.       +||+|++..+ 
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-  141 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGK--RVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHH--HHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-
Confidence            5789999999999999988876  569999999965  999999999988764 55555433       7999995433 


Q ss_pred             CCccHHHHHHHHHHHhc
Q 031506          140 DQSSLRLIIIEVGIILL  156 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll~  156 (158)
                        .....+++.+..+|.
T Consensus       142 --~~~~~~l~~~~~~L~  156 (207)
T 1jsx_A          142 --ASLNDMVSWCHHLPG  156 (207)
T ss_dssp             --SSHHHHHHHHTTSEE
T ss_pred             --CCHHHHHHHHHHhcC
Confidence              456777777766554

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.15  E-value=1.1e-10  Score=88.89  Aligned_cols=95  Identities=18%  Similarity=0.222  Sum_probs=72.3

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CC
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PP  130 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~f  130 (158)
                      +.+++....  .++.+|||+|||+|..+..+++. .+|+++|+++.  +++.+++|+..++..+.+...|.       +|
T Consensus        23 ~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f   97 (243)
T 3d2l_A           23 WVAWVLEQV--EPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEE--MLEIAQEKAMETNRHVDFWVQDMRELELPEPV   97 (243)
T ss_dssp             HHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHH--HHHHHHHHHHHTTCCCEEEECCGGGCCCSSCE
T ss_pred             HHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHH--HHHHHHHhhhhcCCceEEEEcChhhcCCCCCc
Confidence            444454432  24579999999999999998888 89999999965  99999999987766666655542       79


Q ss_pred             cEEE-e-cCCCCC---ccHHHHHHHHHHHhcC
Q 031506          131 SHIC-S-RVLQDQ---SSLRLIIIEVGIILLS  157 (158)
Q Consensus       131 D~Ii-~-d~iy~~---~~~~~ll~tl~~ll~~  157 (158)
                      |+|+ . +++++.   +....+++.+..+|.+
T Consensus        98 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p  129 (243)
T 3d2l_A           98 DAITILCDSLNYLQTEADVKQTFDSAARLLTD  129 (243)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHHHEEE
T ss_pred             CEEEEeCCchhhcCCHHHHHHHHHHHHHhcCC
Confidence            9999 4 488776   5566777777777654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.15  E-value=5e-10  Score=92.02  Aligned_cols=83  Identities=13%  Similarity=0.110  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------  127 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------  127 (158)
                      +..+..++..... ..+.+|||+|||+|.+++.+|+.+.+|+++|+++.  +++.+++|++.|++. +.+...|      
T Consensus       199 ~~~l~~~~~~~~~-~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~--ai~~a~~n~~~ng~~~v~~~~~d~~~~~~  275 (369)
T 3bt7_A          199 NIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKP--SVAAAQYNIAANHIDNVQIIRMAAEEFTQ  275 (369)
T ss_dssp             HHHHHHHHHHHTT-TCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHH--HHHHHHHHHHHTTCCSEEEECCCSHHHHH
T ss_pred             HHHHHHHHHHHhh-cCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHHHcCCCceEEEECCHHHHHH
Confidence            4566666665432 23578999999999999999998789999999965  999999999999873 4454332      


Q ss_pred             ------------------CCCcEEEecCCCC
Q 031506          128 ------------------LPPSHICSRVLQD  140 (158)
Q Consensus       128 ------------------~~fD~Ii~d~iy~  140 (158)
                                        .+||+|+.||++.
T Consensus       276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~  306 (369)
T 3bt7_A          276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRS  306 (369)
T ss_dssp             HHSSCCCCTTGGGSCGGGCCEEEEEECCCTT
T ss_pred             HHhhccccccccccccccCCCCEEEECcCcc
Confidence                              1699999999986

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.14  E-value=1e-10  Score=97.89  Aligned_cols=86  Identities=13%  Similarity=0.150  Sum_probs=66.2

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc--CC-cceEEEcCC-
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KL-NCRLLMTSL-  128 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n--~~-~~~~~~~d~-  128 (158)
                      .++..++.|.....  ..+.+|||+|||+|..++.+++.+.+|+++|+++.  +++.+++|++.+  ++ ++++...|. 
T Consensus        78 at~e~vA~~~a~~l--~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~--~l~~Ar~N~~~~~~gl~~i~~i~~Da~  153 (410)
T 3ll7_A           78 SSGAVTSSYKSRFI--REGTKVVDLTGGLGIDFIALMSKASQGIYIERNDE--TAVAARHNIPLLLNEGKDVNILTGDFK  153 (410)
T ss_dssp             SCCHHHHHHGGGGS--CTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHHHSCTTCEEEEEESCGG
T ss_pred             cCHHHHHHHHHHhc--CCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHH--HHHHHHHhHHHhccCCCcEEEEECcHH
Confidence            34555666644321  13789999999999999999999999999999965  999999999988  66 355554432 


Q ss_pred             ---------CCcEEEecCCCCCc
Q 031506          129 ---------PPSHICSRVLQDQS  142 (158)
Q Consensus       129 ---------~fD~Ii~d~iy~~~  142 (158)
                               +||+|++||.|...
T Consensus       154 ~~L~~~~~~~fDvV~lDPPrr~~  176 (410)
T 3ll7_A          154 EYLPLIKTFHPDYIYVDPARRSG  176 (410)
T ss_dssp             GSHHHHHHHCCSEEEECCEEC--
T ss_pred             HhhhhccCCCceEEEECCCCcCC
Confidence                     79999999998764

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.14  E-value=1.8e-10  Score=88.48  Aligned_cols=101  Identities=11%  Similarity=0.105  Sum_probs=71.7

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEc
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMT  126 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~  126 (158)
                      |....+..++.......++.+|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+++.   +++...
T Consensus        39 ~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~g~~~~~i~~~~g  116 (221)
T 3dr5_A           39 EMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESE--HQRQAKALFREAGYSPSRVRFLLS  116 (221)
T ss_dssp             HHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHH--HHHHHHHHHHHTTCCGGGEEEECS
T ss_pred             HHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCcCcEEEEEc
Confidence            444444454544322223449999999999999988774   569999999965  999999999998765   444432


Q ss_pred             ----------CCCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          127 ----------SLPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       127 ----------d~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                                +.+||+|+.|..  ...+..+++.+..+|.+
T Consensus       117 da~~~l~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~Lkp  155 (221)
T 3dr5_A          117 RPLDVMSRLANDSYQLVFGQVS--PMDLKALVDAAWPLLRR  155 (221)
T ss_dssp             CHHHHGGGSCTTCEEEEEECCC--TTTHHHHHHHHHHHEEE
T ss_pred             CHHHHHHHhcCCCcCeEEEcCc--HHHHHHHHHHHHHHcCC
Confidence                      237999996653  34566777777777654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.14  E-value=2.3e-10  Score=95.12  Aligned_cols=100  Identities=13%  Similarity=0.106  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC----------------------------------------E
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS----------------------------------------N   94 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~----------------------------------------~   94 (158)
                      ...||..+.......++..|||.+||+|.+.+.++..+.                                        +
T Consensus       186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  265 (393)
T 3k0b_A          186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN  265 (393)
T ss_dssp             CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence            345666666544444678999999999999998877543                                        4


Q ss_pred             EEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEEecCCCCCc-----cHHHHHHHHHHHhc
Q 031506           95 VTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHICSRVLQDQS-----SLRLIIIEVGIILL  156 (158)
Q Consensus        95 v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii~d~iy~~~-----~~~~ll~tl~~ll~  156 (158)
                      |+++|+++.  |++.+++|+..+++.  +.+...|.       +||+|++||+|...     .+..+.+.+...|.
T Consensus       266 V~GvDid~~--al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk  339 (393)
T 3k0b_A          266 IIGGDIDAR--LIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYK  339 (393)
T ss_dssp             EEEEESCHH--HHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCHH--HHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHh
Confidence            999999965  999999999999875  55655543       79999999999753     34555666555543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.14  E-value=1e-10  Score=92.66  Aligned_cols=86  Identities=21%  Similarity=0.196  Sum_probs=68.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC----CcceEEEcCC-------CCcEEE-e-c
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK----LNCRLLMTSL-------PPSHIC-S-R  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~----~~~~~~~~d~-------~fD~Ii-~-d  136 (158)
                      ++.+|||+|||+|..+..+++.|.+|+++|+++.  +++.+++++..++    .++.+...|.       +||+|+ + .
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  159 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTS--VLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSG  159 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHH--HHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHH
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHH--HHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCc
Confidence            3449999999999999999999999999999965  9999999998776    3455555543       799888 4 5


Q ss_pred             CCCCCc--cHHHHHHHHHHHhcC
Q 031506          137 VLQDQS--SLRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~~--~~~~ll~tl~~ll~~  157 (158)
                      ++++..  ....+++.+..+|.+
T Consensus       160 ~~~~~~~~~~~~~l~~~~~~L~p  182 (299)
T 3g2m_A          160 SINELDEADRRGLYASVREHLEP  182 (299)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHEEE
T ss_pred             ccccCCHHHHHHHHHHHHHHcCC
Confidence            555554  468888888887764

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.14  E-value=1.1e-10  Score=89.93  Aligned_cols=83  Identities=16%  Similarity=0.224  Sum_probs=64.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhh--cCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc-----------CCCCcEEEe
Q 031506           70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT-----------SLPPSHICS  135 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~--~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~-----------d~~fD~Ii~  135 (158)
                      ++.+|||+|||+|.+++.+++  .+.+|+++|+++.  |++.+++|++.+++. +.+...           +.+||+|++
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNK--RITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHH--HHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence            577999999999999998884  4569999999965  999999999988763 555443           236999995


Q ss_pred             cCCCCCccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ..+   .....+++.+..+|.+
T Consensus       148 ~~~---~~~~~~l~~~~~~Lkp  166 (240)
T 1xdz_A          148 RAV---ARLSVLSELCLPLVKK  166 (240)
T ss_dssp             ECC---SCHHHHHHHHGGGEEE
T ss_pred             ecc---CCHHHHHHHHHHhcCC
Confidence            443   5577888888776654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.13  E-value=2.2e-10  Score=84.16  Aligned_cols=77  Identities=17%  Similarity=0.075  Sum_probs=58.0

Q ss_pred             cchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC---
Q 031506           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL---  128 (158)
Q Consensus        52 W~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~---  128 (158)
                      .|.+..+.+++...  ..++.+|||+|||+|.+++.+++.+ +|+++|+++.  |++.      .+  ++++...|.   
T Consensus         7 ~~~~~~l~~~l~~~--~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~--~~~~------~~--~~~~~~~d~~~~   73 (170)
T 3q87_B            7 GEDTYTLMDALERE--GLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIR--ALES------HR--GGNLVRADLLCS   73 (170)
T ss_dssp             CHHHHHHHHHHHHH--TCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHH--HHHT------CS--SSCEEECSTTTT
T ss_pred             CccHHHHHHHHHhh--cCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHH--HHhc------cc--CCeEEECChhhh
Confidence            36677788876442  2356799999999999999999999 9999999965  8776      22  344544433   


Q ss_pred             ----CCcEEEecCCCCC
Q 031506          129 ----PPSHICSRVLQDQ  141 (158)
Q Consensus       129 ----~fD~Ii~d~iy~~  141 (158)
                          +||+|+++++|+.
T Consensus        74 ~~~~~fD~i~~n~~~~~   90 (170)
T 3q87_B           74 INQESVDVVVFNPPYVP   90 (170)
T ss_dssp             BCGGGCSEEEECCCCBT
T ss_pred             cccCCCCEEEECCCCcc
Confidence                7999997777763

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.13  E-value=6.7e-11  Score=90.74  Aligned_cols=86  Identities=13%  Similarity=0.080  Sum_probs=64.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC----------CCCcEEEecCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS----------LPPSHICSRVL  138 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d----------~~fD~Ii~d~i  138 (158)
                      ++.+|||+|||+|..+..+++.+. +|+++|+++.  |++.++++.+.++.++.+...|          .+||+|++|..
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDG--VFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHH--HHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHH--HHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            567999999999999998888766 8999999965  9999999988776555554432          37999997322


Q ss_pred             ------CCCccHHHHHHHHHHHhcC
Q 031506          139 ------QDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       139 ------y~~~~~~~ll~tl~~ll~~  157 (158)
                            .+....+.+++.+..+|.+
T Consensus       138 ~~~~~~~~~~~~~~~l~~~~r~Lkp  162 (236)
T 1zx0_A          138 PLSEETWHTHQFNFIKNHAFRLLKP  162 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred             ccchhhhhhhhHHHHHHHHHHhcCC
Confidence                  1222344667888877764

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.13  E-value=5.6e-11  Score=94.46  Aligned_cols=48  Identities=23%  Similarity=0.264  Sum_probs=39.8

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHc
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN  117 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n  117 (158)
                      .+++++|||+|||+|..++.+++.  +.+|+++|+++.  |++.+++|+..+
T Consensus        44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~--~i~~A~~~~~~~   93 (292)
T 3g07_A           44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSR--LIHSARQNIRHY   93 (292)
T ss_dssp             GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHH--HHHHHHHTC---
T ss_pred             hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHH--HHHHHHHHHHhh
Confidence            357889999999999999988886  569999999965  999999987654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.12  E-value=1.2e-10  Score=94.60  Aligned_cols=80  Identities=14%  Similarity=0.140  Sum_probs=64.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-----CCcEEEecCCCCCc
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-----PPSHICSRVLQDQS  142 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-----~fD~Ii~d~iy~~~  142 (158)
                      ++.+|||+|||+|.+++. ++.+.+|+++|+++.  +++.+++|++.|++.  +.+...|.     +||+|++|++++..
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~--ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~~~~  271 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPH--AIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKFAH  271 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTTTGG
T ss_pred             CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcHhHH
Confidence            678999999999999999 886569999999965  999999999999873  56665553     79999988877654


Q ss_pred             cHHHHHHHHHHHh
Q 031506          143 SLRLIIIEVGIIL  155 (158)
Q Consensus       143 ~~~~ll~tl~~ll  155 (158)
                         .+++.+..+|
T Consensus       272 ---~~l~~~~~~L  281 (336)
T 2yx1_A          272 ---KFIDKALDIV  281 (336)
T ss_dssp             ---GGHHHHHHHE
T ss_pred             ---HHHHHHHHHc
Confidence               4555555444

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.12  E-value=1.5e-10  Score=92.75  Aligned_cols=83  Identities=14%  Similarity=0.146  Sum_probs=62.1

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcCC------CC
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTSL------PP  130 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d~------~f  130 (158)
                      +.+.+.......++.+|||+|||+|.++..+++.+.+|+++|+++.  +++.+++|+..++. ++++...|.      +|
T Consensus        30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~--~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~  107 (299)
T 2h1r_A           30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSR--MISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF  107 (299)
T ss_dssp             HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHH--HHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred             HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence            3444444333446789999999999999999999899999999965  99999999987664 344443332      79


Q ss_pred             cEEEecCCCCCc
Q 031506          131 SHICSRVLQDQS  142 (158)
Q Consensus       131 D~Ii~d~iy~~~  142 (158)
                      |+|++|++|+..
T Consensus       108 D~Vv~n~py~~~  119 (299)
T 2h1r_A          108 DVCTANIPYKIS  119 (299)
T ss_dssp             SEEEEECCGGGH
T ss_pred             CEEEEcCCcccc
Confidence            999988888864

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.11  E-value=1.5e-10  Score=90.74  Aligned_cols=87  Identities=16%  Similarity=0.079  Sum_probs=69.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC---------CCCcEEE-e
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS---------LPPSHIC-S  135 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d---------~~fD~Ii-~  135 (158)
                      .++.+|||+|||+|..+..+++.+. +|+++|+++.  +++.+++++..++..  +.+...|         .+||+|+ .
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEV--SINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  140 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHH--HHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence            3678999999999999998888876 9999999965  999999999877652  4444433         2699999 8


Q ss_pred             cCCCC----CccHHHHHHHHHHHhcC
Q 031506          136 RVLQD----QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~----~~~~~~ll~tl~~ll~~  157 (158)
                      .++++    .+....+++.+..+|.+
T Consensus       141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp  166 (298)
T 1ri5_A          141 FSFHYAFSTSESLDIAQRNIARHLRP  166 (298)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEE
T ss_pred             chhhhhcCCHHHHHHHHHHHHHhcCC
Confidence            88865    56677888888877754

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.11  E-value=1.3e-10  Score=91.69  Aligned_cols=82  Identities=15%  Similarity=0.089  Sum_probs=63.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-------CCCcEEEecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-------LPPSHICSRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-------~~fD~Ii~d~i  138 (158)
                      .++.+|||+|||+|.+++.+++.+.  +|+++|+++.  +++.+++|++.|++. +.+...|       .+||+|++|++
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~--av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p  195 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPT--AYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYV  195 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHH--HHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCc
Confidence            3678999999999999999988754  9999999965  999999999999874 4444333       26999998877


Q ss_pred             CCCccHHHHHHHHHHHh
Q 031506          139 QDQSSLRLIIIEVGIIL  155 (158)
Q Consensus       139 y~~~~~~~ll~tl~~ll  155 (158)
                      +   ....++..+..+|
T Consensus       196 ~---~~~~~l~~~~~~L  209 (272)
T 3a27_A          196 H---KTHKFLDKTFEFL  209 (272)
T ss_dssp             S---SGGGGHHHHHHHE
T ss_pred             c---cHHHHHHHHHHHc
Confidence            6   3444555554444

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.11  E-value=3.7e-10  Score=93.72  Aligned_cols=100  Identities=16%  Similarity=0.154  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC----------------------------------------E
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS----------------------------------------N   94 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~----------------------------------------~   94 (158)
                      ...||..+.......++..+||.+||+|.+.+.++..+.                                        +
T Consensus       179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  258 (384)
T 3ldg_A          179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD  258 (384)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence            356777666554445678999999999999998876543                                        4


Q ss_pred             EEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEEecCCCCC-----ccHHHHHHHHHHHhc
Q 031506           95 VTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHICSRVLQDQ-----SSLRLIIIEVGIILL  156 (158)
Q Consensus        95 v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii~d~iy~~-----~~~~~ll~tl~~ll~  156 (158)
                      |+++|+++.  |++.+++|++.+++.  +.+...|.       +||+|++||+|..     .....+.+.+...|.
T Consensus       259 v~GvDid~~--al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk  332 (384)
T 3ldg_A          259 ISGFDFDGR--MVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFA  332 (384)
T ss_dssp             EEEEESCHH--HHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCHH--HHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHh
Confidence            999999965  999999999999875  45555542       7999999999974     345666666666554

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.10  E-value=5.5e-11  Score=91.75  Aligned_cols=89  Identities=16%  Similarity=0.275  Sum_probs=69.8

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCC--------------------------
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--------------------------  119 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~--------------------------  119 (158)
                      ...++.+|||+|||+|..++.+++.+. +|+++|+++.  |++.+++++..++.                          
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQ--NLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE  130 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHH--HHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHH--HHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence            345678999999999999999999888 9999999965  99999988865431                          


Q ss_pred             ----cc-eEEEcC------------CCCcEEE-ecCCC----CCccHHHHHHHHHHHhcC
Q 031506          120 ----NC-RLLMTS------------LPPSHIC-SRVLQ----DQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       120 ----~~-~~~~~d------------~~fD~Ii-~d~iy----~~~~~~~ll~tl~~ll~~  157 (158)
                          .+ .+...|            .+||+|+ +.+++    +.+....+++.+..+|.+
T Consensus       131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp  190 (265)
T 2i62_A          131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP  190 (265)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE
T ss_pred             HhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC
Confidence                03 333332            3699999 89988    666788888888877764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.10  E-value=4.6e-10  Score=84.09  Aligned_cols=79  Identities=16%  Similarity=0.128  Sum_probs=64.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCcEEE-ecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPSHIC-SRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD~Ii-~d~iy  139 (158)
                      ++.+|||+|||+|..+..+   +. +|+++|+++.  +++.++++.  .  .+.+...        +.+||+|+ ..+++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~--~~~~a~~~~--~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  106 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEA--MLAVGRRRA--P--EATWVRAWGEALPFPGESFDVVLLFTTLE  106 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHH--HHHHHHHHC--T--TSEEECCCTTSCCSCSSCEEEEEEESCTT
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHH--HHHHHHHhC--C--CcEEEEcccccCCCCCCcEEEEEEcChhh
Confidence            7789999999999998876   67 9999999965  999988876  2  2333322        23799999 99999


Q ss_pred             CCccHHHHHHHHHHHhcC
Q 031506          140 DQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll~~  157 (158)
                      +.++...+++.+..+|.+
T Consensus       107 ~~~~~~~~l~~~~~~L~p  124 (211)
T 2gs9_A          107 FVEDVERVLLEARRVLRP  124 (211)
T ss_dssp             TCSCHHHHHHHHHHHEEE
T ss_pred             hcCCHHHHHHHHHHHcCC
Confidence            999999999999988764

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.10  E-value=7.9e-10  Score=83.51  Aligned_cols=86  Identities=17%  Similarity=0.014  Sum_probs=64.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcC----------CCCcEEE-e
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTS----------LPPSHIC-S  135 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d----------~~fD~Ii-~  135 (158)
                      ++.+|||+|||+|..++.+++.  +.+|+++|+++.  +++.+++|+..+++ ++.+...|          ..||+|+ .
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~--~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKS--VLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHH--HHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHH--HHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence            4678999999999999988887  469999999965  99999999998876 34554433          2699999 4


Q ss_pred             cCCCCCc--------cHHHHHHHHHHHhcC
Q 031506          136 RVLQDQS--------SLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~--------~~~~ll~tl~~ll~~  157 (158)
                      .+.-+..        ..+.+++.+..+|.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  148 (214)
T 1yzh_A          119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPE  148 (214)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCT
T ss_pred             CCCCccccchhhhccCCHHHHHHHHHHcCC
Confidence            3321111        236788888887765

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.09  E-value=3.9e-10  Score=85.39  Aligned_cols=84  Identities=13%  Similarity=0.103  Sum_probs=66.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------------CCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------------LPP  130 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------------~~f  130 (158)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+++.  +.+...|              .+|
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEK--STALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY  141 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence            5679999999999999988886   679999999965  999999999988765  4444331              479


Q ss_pred             cEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          131 SHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       131 D~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      |+|+.|..  ...+..+++.+..+|.+
T Consensus       142 D~v~~~~~--~~~~~~~l~~~~~~L~p  166 (225)
T 3tr6_A          142 DLIYIDAD--KANTDLYYEESLKLLRE  166 (225)
T ss_dssp             EEEEECSC--GGGHHHHHHHHHHHEEE
T ss_pred             cEEEECCC--HHHHHHHHHHHHHhcCC
Confidence            99996653  45677788888777654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.09  E-value=3.8e-10  Score=92.76  Aligned_cols=87  Identities=10%  Similarity=0.127  Sum_probs=69.7

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcC----------CCCcEEE
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTS----------LPPSHIC  134 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d----------~~fD~Ii  134 (158)
                      ..++.+|||+| |+|.+++.+++.+.  +|+++|+++.  |++.+++|++.+++ ++.+...|          .+||+|+
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~--~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi  246 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDER--LTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFI  246 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHH--HHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEE
Confidence            34678999999 99999999988864  9999999965  99999999998887 45554332          1699999


Q ss_pred             ecCCCCCccHHHHHHHHHHHhcC
Q 031506          135 SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       135 ~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +|++|.......+++.+..+|.+
T Consensus       247 ~~~p~~~~~~~~~l~~~~~~Lkp  269 (373)
T 2qm3_A          247 TDPPETLEAIRAFVGRGIATLKG  269 (373)
T ss_dssp             ECCCSSHHHHHHHHHHHHHTBCS
T ss_pred             ECCCCchHHHHHHHHHHHHHccc
Confidence            88888766567777777776654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.09  E-value=3.2e-10  Score=87.91  Aligned_cols=66  Identities=12%  Similarity=0.160  Sum_probs=55.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC--------CCcEEE-ec
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL--------PPSHIC-SR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~--------~fD~Ii-~d  136 (158)
                      ++.+|+|+|||+|.+++.+++.+.  +|+++|+++.  +++.+++|++.|++.  +.+...|.        +||+|+ +.
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~--al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEG--PYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG   92 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHH--HHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence            567999999999999999999874  8999999975  999999999999985  45554443        599988 65


Q ss_pred             C
Q 031506          137 V  137 (158)
Q Consensus       137 ~  137 (158)
                      .
T Consensus        93 ~   93 (225)
T 3kr9_A           93 M   93 (225)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.08  E-value=3.7e-10  Score=85.88  Aligned_cols=88  Identities=11%  Similarity=0.159  Sum_probs=65.1

Q ss_pred             ecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC---
Q 031506           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---  127 (158)
Q Consensus        51 vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---  127 (158)
                      .|.....+. ++.......++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.+++|...++ ++.+...|   
T Consensus        52 ~~~~~~~~~-~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~--~~~~a~~~~~~~~-~v~~~~~d~~~  127 (231)
T 1vbf_A           52 NTTALNLGI-FMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEK--MYNYASKLLSYYN-NIKLILGDGTL  127 (231)
T ss_dssp             EECCHHHHH-HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHH--HHHHHHHHHTTCS-SEEEEESCGGG
T ss_pred             ccCCHHHHH-HHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHH--HHHHHHHHHhhcC-CeEEEECCccc
Confidence            355544433 4444333456789999999999999999998899999999965  9999999998766 55554433   


Q ss_pred             -----CCCcEEE-ecCCCCCc
Q 031506          128 -----LPPSHIC-SRVLQDQS  142 (158)
Q Consensus       128 -----~~fD~Ii-~d~iy~~~  142 (158)
                           .+||+|+ ..++++..
T Consensus       128 ~~~~~~~fD~v~~~~~~~~~~  148 (231)
T 1vbf_A          128 GYEEEKPYDRVVVWATAPTLL  148 (231)
T ss_dssp             CCGGGCCEEEEEESSBBSSCC
T ss_pred             ccccCCCccEEEECCcHHHHH
Confidence                 2799999 66666543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.08  E-value=3.6e-10  Score=89.91  Aligned_cols=84  Identities=12%  Similarity=0.116  Sum_probs=64.8

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC------C
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL------P  129 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~------~  129 (158)
                      +++.+.......++.+|||+|||+|.++..+++.+.+|+++|+++.  |++.+++|+..++.  ++.+...|.      .
T Consensus        16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~   93 (285)
T 1zq9_A           16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPR--LVAELHKRVQGTPVASKLQVLVGDVLKTDLPF   93 (285)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHH--HHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence            3444444333446789999999999999999999999999999965  99999999876654  355555543      6


Q ss_pred             CcEEEecCCCCCcc
Q 031506          130 PSHICSRVLQDQSS  143 (158)
Q Consensus       130 fD~Ii~d~iy~~~~  143 (158)
                      ||+|+++++|+...
T Consensus        94 fD~vv~nlpy~~~~  107 (285)
T 1zq9_A           94 FDTCVANLPYQISS  107 (285)
T ss_dssp             CSEEEEECCGGGHH
T ss_pred             hcEEEEecCcccch
Confidence            89999888887643

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.08  E-value=5.2e-10  Score=89.85  Aligned_cols=83  Identities=13%  Similarity=0.102  Sum_probs=63.8

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC--------C
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL--------P  129 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~--------~  129 (158)
                      +.+.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.  +++.+++|+.. ..++++...|.        +
T Consensus        38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~--li~~a~~~~~~-~~~v~vi~gD~l~~~~~~~~  114 (295)
T 3gru_A           38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKS--LEPYANKLKEL-YNNIEIIWGDALKVDLNKLD  114 (295)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGG--GHHHHHHHHHH-CSSEEEEESCTTTSCGGGSC
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHH--HHHHHHHHhcc-CCCeEEEECchhhCCcccCC
Confidence            3444444444456789999999999999999999899999999986  99999999873 22455555543        5


Q ss_pred             CcEEEecCCCCCcc
Q 031506          130 PSHICSRVLQDQSS  143 (158)
Q Consensus       130 fD~Ii~d~iy~~~~  143 (158)
                      ||.|+++++|+...
T Consensus       115 fD~Iv~NlPy~is~  128 (295)
T 3gru_A          115 FNKVVANLPYQISS  128 (295)
T ss_dssp             CSEEEEECCGGGHH
T ss_pred             ccEEEEeCcccccH
Confidence            99999888887643

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.08  E-value=2.9e-10  Score=86.41  Aligned_cols=66  Identities=15%  Similarity=0.142  Sum_probs=54.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------------CCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------------LPP  130 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------------~~f  130 (158)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+++.  +++...|              .+|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f  135 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPD--CAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  135 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHH--HHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChH--HHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence            5679999999999999988874   679999999965  999999999998875  4444432              369


Q ss_pred             cEEEecC
Q 031506          131 SHICSRV  137 (158)
Q Consensus       131 D~Ii~d~  137 (158)
                      |+|++|.
T Consensus       136 D~V~~d~  142 (221)
T 3u81_A          136 DMVFLDH  142 (221)
T ss_dssp             SEEEECS
T ss_pred             EEEEEcC
Confidence            9999654

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.08  E-value=3.7e-10  Score=87.81  Aligned_cols=67  Identities=10%  Similarity=0.111  Sum_probs=55.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC--------CCcEEE-ec
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL--------PPSHIC-SR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~--------~fD~Ii-~d  136 (158)
                      ++.+|+|+|||+|.+++.+++.+.  +|+++|+++.  +++.+++|++.|++.  +.+...|.        +||+|+ +.
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~--al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG   98 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNG--PYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG   98 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHH--HHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence            567999999999999999999874  7999999975  999999999999985  45554442        599988 65


Q ss_pred             CC
Q 031506          137 VL  138 (158)
Q Consensus       137 ~i  138 (158)
                      .-
T Consensus        99 mG  100 (230)
T 3lec_A           99 MG  100 (230)
T ss_dssp             EC
T ss_pred             Cc
Confidence            43

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.07  E-value=3.6e-10  Score=88.61  Aligned_cols=66  Identities=8%  Similarity=0.076  Sum_probs=54.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC--------CCcEEE-ec
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL--------PPSHIC-SR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~--------~fD~Ii-~d  136 (158)
                      ++.+|||+|||+|.+++.+++.+.  +|+++|+++.  +++.+++|++.|++.  +.+...|.        +||+|+ +.
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~--al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag   98 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDG--PFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG   98 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHH--HHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence            467999999999999999999874  8999999975  999999999999985  45554443        499988 64


Q ss_pred             C
Q 031506          137 V  137 (158)
Q Consensus       137 ~  137 (158)
                      .
T Consensus        99 m   99 (244)
T 3gnl_A           99 M   99 (244)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.07  E-value=2.1e-10  Score=89.11  Aligned_cols=81  Identities=21%  Similarity=0.197  Sum_probs=64.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCcEEE-ecCCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPSHIC-SRVLQD  140 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD~Ii-~d~iy~  140 (158)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.  |++.++++...+     +...        +.+||+|+ ..++++
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~--~l~~a~~~~~~~-----~~~~d~~~~~~~~~~fD~v~~~~~~~~  126 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKE--MLEVAREKGVKN-----VVEAKAEDLPFPSGAFEAVLALGDVLS  126 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHH--HHHHHHHHTCSC-----EEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHH--HHHHHHhhcCCC-----EEECcHHHCCCCCCCEEEEEEcchhhh
Confidence            6789999999999999999999999999999965  999988876521     2222        23799999 666654


Q ss_pred             -CccHHHHHHHHHHHhcC
Q 031506          141 -QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       141 -~~~~~~ll~tl~~ll~~  157 (158)
                       .++...+++.+..+|.+
T Consensus       127 ~~~~~~~~l~~~~~~Lkp  144 (260)
T 2avn_A          127 YVENKDKAFSEIRRVLVP  144 (260)
T ss_dssp             HCSCHHHHHHHHHHHEEE
T ss_pred             ccccHHHHHHHHHHHcCC
Confidence             36688999999888764

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.07  E-value=1.2e-10  Score=91.76  Aligned_cols=73  Identities=15%  Similarity=0.137  Sum_probs=57.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChH-----HHHHHHHHHHHHcCCc--ceEEEcC------------CCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI-----EVLKNMRRVCEMNKLN--CRLLMTS------------LPP  130 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~-----~~l~~~~~n~~~n~~~--~~~~~~d------------~~f  130 (158)
                      ++.+|||+|||+|..++.+++.|.+|+++|+++..     ++++.+++|++.|++.  +.+...|            .+|
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f  162 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP  162 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence            46799999999999999999999999999999600     4899999999887653  4444332            479


Q ss_pred             cEEEecCCCCCc
Q 031506          131 SHICSRVLQDQS  142 (158)
Q Consensus       131 D~Ii~d~iy~~~  142 (158)
                      |+|++||+|...
T Consensus       163 D~V~~dP~~~~~  174 (258)
T 2r6z_A          163 DIVYLDPMYPER  174 (258)
T ss_dssp             SEEEECCCC---
T ss_pred             cEEEECCCCCCc
Confidence            999999998764

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.07  E-value=5.9e-10  Score=84.74  Aligned_cols=106  Identities=16%  Similarity=0.195  Sum_probs=71.2

Q ss_pred             ceEecc-hHHHHHHHHHh---cccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCc
Q 031506           48 GLFVWP-CSVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN  120 (158)
Q Consensus        48 g~~vW~-~~~~la~~l~~---~~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~  120 (158)
                      .++.|. ....++..+..   .....++.+|||+|||+|..++.+++. |  .+|+++|.++.  +++.+++|++.+ .+
T Consensus        47 ~~~~~~p~~~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~--~~~~~~~~~~~~-~~  123 (227)
T 1g8a_A           47 EYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPR--VLRELVPIVEER-RN  123 (227)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHH--HHHHHHHHHSSC-TT
T ss_pred             EEEEeCCCchhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHH--HHHHHHHHHhcc-CC
Confidence            346663 33444455532   222346789999999999999988865 3  69999999965  999999988765 23


Q ss_pred             ceEEEcC-----------CCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          121 CRLLMTS-----------LPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       121 ~~~~~~d-----------~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +.+...|           .+||+|++|+. .......+++.+..+|.+
T Consensus       124 v~~~~~d~~~~~~~~~~~~~~D~v~~~~~-~~~~~~~~l~~~~~~Lkp  170 (227)
T 1g8a_A          124 IVPILGDATKPEEYRALVPKVDVIFEDVA-QPTQAKILIDNAEVYLKR  170 (227)
T ss_dssp             EEEEECCTTCGGGGTTTCCCEEEEEECCC-STTHHHHHHHHHHHHEEE
T ss_pred             CEEEEccCCCcchhhcccCCceEEEECCC-CHhHHHHHHHHHHHhcCC
Confidence            4443332           26999997766 333334557777777654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.07  E-value=4e-10  Score=86.51  Aligned_cols=84  Identities=11%  Similarity=0.121  Sum_probs=65.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhh--cCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc----------CCCCcEEEe
Q 031506           70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT----------SLPPSHICS  135 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~--~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~----------d~~fD~Ii~  135 (158)
                      ++.+|||+|||+|..++.+++  .+.+|+++|+++.  +++.+++|++.+++.  +++...          +.+||+|++
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNET--MIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHH--HHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            678999999999999998888  4569999999965  999999999988763  444433          237999995


Q ss_pred             cCCCCCccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      |..  ...+..+++.+..+|.+
T Consensus       149 ~~~--~~~~~~~l~~~~~~Lkp  168 (232)
T 3ntv_A          149 DAA--KAQSKKFFEIYTPLLKH  168 (232)
T ss_dssp             ETT--SSSHHHHHHHHGGGEEE
T ss_pred             cCc--HHHHHHHHHHHHHhcCC
Confidence            542  45567778777766653

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.07  E-value=1.1e-09  Score=83.04  Aligned_cols=85  Identities=11%  Similarity=0.009  Sum_probs=66.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------------CC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------------LP  129 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------------~~  129 (158)
                      .++++|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+++.  +++...|              .+
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~  145 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQ--PPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT  145 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSH--HHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence            46789999999999999988875   569999999986  999999999988763  4444331              47


Q ss_pred             CcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          130 PSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       130 fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ||+|++|+.  ...+..+++.+..+|.+
T Consensus       146 ~D~v~~d~~--~~~~~~~l~~~~~~L~p  171 (229)
T 2avd_A          146 FDVAVVDAD--KENCSAYYERCLQLLRP  171 (229)
T ss_dssp             EEEEEECSC--STTHHHHHHHHHHHEEE
T ss_pred             ccEEEECCC--HHHHHHHHHHHHHHcCC
Confidence            999997665  45567777777776653

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.07  E-value=7e-10  Score=86.38  Aligned_cols=108  Identities=12%  Similarity=0.126  Sum_probs=77.1

Q ss_pred             CCceEecchHH-HHHHHHHhc---ccCCCCCeEEEeccCCCHHHHHHhhc-CC--EEEEEecCChHHHHHHHHHHHHHcC
Q 031506           46 EYGLFVWPCSV-ILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNK  118 (158)
Q Consensus        46 ~~g~~vW~~~~-~la~~l~~~---~~~~~~~~vLELG~GtGl~~i~~a~~-g~--~v~~tD~~~~~~~l~~~~~n~~~n~  118 (158)
                      +..+++|+.-. .||..+.+.   ....+|.+|||+|||+|..+..+|+. |.  +|+++|+++.  |++.++++++..+
T Consensus        49 ~~e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~--~~~~l~~~a~~~~  126 (233)
T 4df3_A           49 GEEYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPR--VMRDLLTVVRDRR  126 (233)
T ss_dssp             TEEEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHH--HHHHHHHHSTTCT
T ss_pred             CceeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHH--HHHHHHHhhHhhc
Confidence            45799997644 466666653   23457899999999999999988875 43  8999999965  9999988876543


Q ss_pred             CcceEEEc-----------CCCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          119 LNCRLLMT-----------SLPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       119 ~~~~~~~~-----------d~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      . +.....           +..+|+|++|+.+. .....+++.+...|++
T Consensus       127 n-i~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~-~~~~~~l~~~~r~LKp  174 (233)
T 4df3_A          127 N-IFPILGDARFPEKYRHLVEGVDGLYADVAQP-EQAAIVVRNARFFLRD  174 (233)
T ss_dssp             T-EEEEESCTTCGGGGTTTCCCEEEEEECCCCT-THHHHHHHHHHHHEEE
T ss_pred             C-eeEEEEeccCccccccccceEEEEEEeccCC-hhHHHHHHHHHHhccC
Confidence            2 222222           12688888876544 5567778887777654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.06  E-value=6.4e-10  Score=85.85  Aligned_cols=84  Identities=14%  Similarity=0.134  Sum_probs=63.3

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEE
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHIC  134 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii  134 (158)
                      ...++.+|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+++.  +.+...|.       +||+|+
T Consensus        90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~  167 (255)
T 3mb5_A           90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIRED--FAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVI  167 (255)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHH--HHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEE
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHH--HHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEE
Confidence            3446789999999999999988887   569999999965  999999999988765  44444432       699999


Q ss_pred             ecCCCCCccHHHHHHHHHHHhc
Q 031506          135 SRVLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       135 ~d~iy~~~~~~~ll~tl~~ll~  156 (158)
                      +|+....    .+++.+..+|.
T Consensus       168 ~~~~~~~----~~l~~~~~~L~  185 (255)
T 3mb5_A          168 LDLPQPE----RVVEHAAKALK  185 (255)
T ss_dssp             ECSSCGG----GGHHHHHHHEE
T ss_pred             ECCCCHH----HHHHHHHHHcC
Confidence            7765443    34555554443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.06  E-value=1.3e-09  Score=82.73  Aligned_cols=87  Identities=10%  Similarity=-0.010  Sum_probs=65.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC----------CCCcEEE-e
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS----------LPPSHIC-S  135 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d----------~~fD~Ii-~  135 (158)
                      .+.+|||+|||+|..++.+++.  +.+|+++|+++.  +++.+++|+..+++. +++...|          ..||.|+ .
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~--~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~  115 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKS--VIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN  115 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHH--HHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechH--HHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence            4678999999999999988886  569999999965  999999999988763 5555443          2689988 3


Q ss_pred             cC-CCCCcc-------HHHHHHHHHHHhcCC
Q 031506          136 RV-LQDQSS-------LRLIIIEVGIILLSS  158 (158)
Q Consensus       136 d~-iy~~~~-------~~~ll~tl~~ll~~~  158 (158)
                      -+ ++....       .+.+++.+..+|.++
T Consensus       116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~Lkpg  146 (213)
T 2fca_A          116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG  146 (213)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred             CCCCCcCccccccccCcHHHHHHHHHHcCCC
Confidence            22 222211       478888888888753

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.06  E-value=4.7e-10  Score=92.39  Aligned_cols=88  Identities=23%  Similarity=0.241  Sum_probs=70.9

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHc-----C----CcceEEEcC--------
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMN-----K----LNCRLLMTS--------  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n-----~----~~~~~~~~d--------  127 (158)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+     +    .++.+...|        
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~  158 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDN--QLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE  158 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHH--HHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc
Confidence            346789999999999999988774   459999999965  999999998755     2    234444331        


Q ss_pred             ------CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 ------LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 ------~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                            .+||+|+ ..++++.++...+++.+..+|.+
T Consensus       159 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkp  195 (383)
T 4fsd_A          159 PEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRD  195 (383)
T ss_dssp             SCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE
T ss_pred             cCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCC
Confidence                  2799999 99999999999999999998865

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.05  E-value=7.2e-10  Score=88.92  Aligned_cols=104  Identities=7%  Similarity=-0.050  Sum_probs=68.9

Q ss_pred             cchHHHHHHHHHhccc-CCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc-------ce
Q 031506           52 WPCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-------CR  122 (158)
Q Consensus        52 W~~~~~la~~l~~~~~-~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-------~~  122 (158)
                      |-.+..+.+|+..... ..++.+|||||||+|.....+++. +.+|+++|+++.  |++.++++....+..       +.
T Consensus        29 ~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~--~l~~A~~~~~~~~~~~~~~~~~~~  106 (302)
T 2vdw_A           29 YVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDAD--AIARGNERYNKLNSGIKTKYYKFD  106 (302)
T ss_dssp             HHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHHHCC----CCCEEE
T ss_pred             HHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHH--HHHHHHHHHHhccccccccccccc
Confidence            4444444444432111 124689999999999755544444 569999999975  999999887655432       12


Q ss_pred             EEEc----------------CCCCcEEE-ecCCCC---CccHHHHHHHHHHHhcC
Q 031506          123 LLMT----------------SLPPSHIC-SRVLQD---QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       123 ~~~~----------------d~~fD~Ii-~d~iy~---~~~~~~ll~tl~~ll~~  157 (158)
                      +...                +.+||+|+ ..+++|   .+....+++.++.+|.+
T Consensus       107 f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp  161 (302)
T 2vdw_A          107 YIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS  161 (302)
T ss_dssp             EEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE
T ss_pred             hhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC
Confidence            2111                23799999 777744   35668999999998875

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.05  E-value=4.7e-10  Score=85.23  Aligned_cols=93  Identities=13%  Similarity=0.046  Sum_probs=68.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------CC
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------LP  129 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------~~  129 (158)
                      .+.+++....  .++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.++++..    ++.+...|       .+
T Consensus        29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~--~~~~a~~~~~----~~~~~~~d~~~~~~~~~  100 (239)
T 3bxo_A           29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSED--MLTHARKRLP----DATLHQGDMRDFRLGRK  100 (239)
T ss_dssp             HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHH--HHHHHHHHCT----TCEEEECCTTTCCCSSC
T ss_pred             HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHH--HHHHHHHhCC----CCEEEECCHHHcccCCC
Confidence            4445554432  35689999999999999999988889999999965  9998887742    23444333       37


Q ss_pred             CcEEE-e-cCCCCC---ccHHHHHHHHHHHhcC
Q 031506          130 PSHIC-S-RVLQDQ---SSLRLIIIEVGIILLS  157 (158)
Q Consensus       130 fD~Ii-~-d~iy~~---~~~~~ll~tl~~ll~~  157 (158)
                      ||+|+ + +++.+.   +....+++.+..+|.+
T Consensus       101 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p  133 (239)
T 3bxo_A          101 FSAVVSMFSSVGYLKTTEELGAAVASFAEHLEP  133 (239)
T ss_dssp             EEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEE
T ss_pred             CcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCC
Confidence            99999 4 477776   4567777877777654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.04  E-value=2.9e-09  Score=85.65  Aligned_cols=87  Identities=15%  Similarity=0.179  Sum_probs=66.1

Q ss_pred             CCCCCeEEEeccCCCH-HHHHHhh-cCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcC------CCCcEEEecCC
Q 031506           68 RFSGANVVELGAGTSL-PGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTS------LPPSHICSRVL  138 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl-~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d------~~fD~Ii~d~i  138 (158)
                      ..++.+|||+|||+|. .++.+++ .|++|+++|+++.  |++.+++|++..++ ++++...|      .+||+|+....
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~--~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~  197 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPD--IAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL  197 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHH--HHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHH--HHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC
Confidence            3478899999999874 5566666 5889999999965  99999999988775 34444443      38999993333


Q ss_pred             CCCccHHHHHHHHHHHhcCC
Q 031506          139 QDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       139 y~~~~~~~ll~tl~~ll~~~  158 (158)
                        .+....+++.+...|.++
T Consensus       198 --~~d~~~~l~el~r~LkPG  215 (298)
T 3fpf_A          198 --AEPKRRVFRNIHRYVDTE  215 (298)
T ss_dssp             --CSCHHHHHHHHHHHCCTT
T ss_pred             --ccCHHHHHHHHHHHcCCC
Confidence              467788898888887653

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.04  E-value=1.6e-09  Score=84.37  Aligned_cols=85  Identities=11%  Similarity=-0.023  Sum_probs=66.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc---------------CC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT---------------SL  128 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~---------------d~  128 (158)
                      .++++|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+++.  +++...               +.
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~--~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~  155 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKE--NYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG  155 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCH--HHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence            35679999999999999988876   679999999986  999999999988763  344322               24


Q ss_pred             CCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          129 PPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       129 ~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +||+|++|..  ...+..+++.+..+|.+
T Consensus       156 ~fD~V~~d~~--~~~~~~~l~~~~~~Lkp  182 (247)
T 1sui_A          156 SYDFIFVDAD--KDNYLNYHKRLIDLVKV  182 (247)
T ss_dssp             CBSEEEECSC--STTHHHHHHHHHHHBCT
T ss_pred             CEEEEEEcCc--hHHHHHHHHHHHHhCCC
Confidence            7999996643  45677888888877765

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.04  E-value=7.9e-10  Score=94.12  Aligned_cols=82  Identities=16%  Similarity=0.253  Sum_probs=62.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-----
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-----  128 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-----  128 (158)
                      .+.+.+.+.....++.+|||+|||+|.+++.+++.+. +|+++|+++   +++.+++|++.+++.  +.+...|.     
T Consensus       145 ~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~---~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~  221 (480)
T 3b3j_A          145 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST---MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL  221 (480)
T ss_dssp             HHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH---HHHHHHHHHHHTTCTTTEEEEESCTTTCCC
T ss_pred             HHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH---HHHHHHHHHHHcCCCCcEEEEECchhhCcc
Confidence            3344455444445788999999999999999998876 999999973   889999999999874  55554432     


Q ss_pred             --CCcEEEecCC-CCC
Q 031506          129 --PPSHICSRVL-QDQ  141 (158)
Q Consensus       129 --~fD~Ii~d~i-y~~  141 (158)
                        +||+|+++++ |+.
T Consensus       222 ~~~fD~Ivs~~~~~~~  237 (480)
T 3b3j_A          222 PEQVDIIISEPMGYML  237 (480)
T ss_dssp             SSCEEEEECCCCHHHH
T ss_pred             CCCeEEEEEeCchHhc
Confidence              7999996655 543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.03  E-value=5.2e-10  Score=81.92  Aligned_cols=82  Identities=17%  Similarity=0.158  Sum_probs=63.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-e-cCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-S-RVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~-d~iy  139 (158)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.+++|...    +.+...|        .+||+|+ + ++++
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~--~~~~a~~~~~~----~~~~~~d~~~~~~~~~~~D~i~~~~~~~~  119 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPI--LIDYAKQDFPE----ARWVVGDLSVDQISETDFDLIVSAGNVMG  119 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHH--HHHHHHHHCTT----SEEEECCTTTSCCCCCCEEEEEECCCCGG
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHH--HHHHHHHhCCC----CcEEEcccccCCCCCCceeEEEECCcHHh
Confidence            5779999999999999999998999999999965  99988887632    3333332        2799999 5 5665


Q ss_pred             CC--ccHHHHHHHHHHHhcC
Q 031506          140 DQ--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       140 ~~--~~~~~ll~tl~~ll~~  157 (158)
                      +.  +....+++.+..+|.+
T Consensus       120 ~~~~~~~~~~l~~~~~~l~~  139 (195)
T 3cgg_A          120 FLAEDGREPALANIHRALGA  139 (195)
T ss_dssp             GSCHHHHHHHHHHHHHHEEE
T ss_pred             hcChHHHHHHHHHHHHHhCC
Confidence            55  4567888888877654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.03  E-value=3.4e-10  Score=90.08  Aligned_cols=87  Identities=13%  Similarity=-0.002  Sum_probs=68.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHh--h-cCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEE-e
Q 031506           69 FSGANVVELGAGTSLPGLVAA--K-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHIC-S  135 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a--~-~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii-~  135 (158)
                      .++.+|||+|||+|..++.++  . .+.+|+++|+++.  +++.+++|+..+++.  +++...|.       +||+|+ .
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~  194 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPE--ALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSN  194 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHH--HHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHH--HHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEEC
Confidence            467899999999999999774  2 2559999999965  999999999987765  45554432       799999 7


Q ss_pred             cCCCCCccHHH---HHHHHHHHhcC
Q 031506          136 RVLQDQSSLRL---IIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~---ll~tl~~ll~~  157 (158)
                      .++++..+...   +++.+..+|.+
T Consensus       195 ~~~~~~~~~~~~~~~l~~~~~~Lkp  219 (305)
T 3ocj_A          195 GLNIYEPDDARVTELYRRFWQALKP  219 (305)
T ss_dssp             SSGGGCCCHHHHHHHHHHHHHHEEE
T ss_pred             ChhhhcCCHHHHHHHHHHHHHhcCC
Confidence            88887766554   68888877754

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.03  E-value=3.9e-10  Score=93.32  Aligned_cols=94  Identities=16%  Similarity=0.148  Sum_probs=72.5

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceE--E-Ec--------
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--L-MT--------  126 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~-~~--------  126 (158)
                      +++.+.......++.+|||+|||+|..+..+++.|.+|+++|+++.  +++.++++    +.....  . ..        
T Consensus        95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~--~~~~a~~~----~~~~~~~~~~~~~~~~l~~~  168 (416)
T 4e2x_A           95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSG--VAAKAREK----GIRVRTDFFEKATADDVRRT  168 (416)
T ss_dssp             HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHH--HHHHHHTT----TCCEECSCCSHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHH--HHHHHHHc----CCCcceeeechhhHhhcccC
Confidence            4444444433346789999999999999999999999999999965  89887765    222111  1 00        


Q ss_pred             CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          127 SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       127 d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +.+||+|+ .++++|.++...+++.+..+|.+
T Consensus       169 ~~~fD~I~~~~vl~h~~d~~~~l~~~~r~Lkp  200 (416)
T 4e2x_A          169 EGPANVIYAANTLCHIPYVQSVLEGVDALLAP  200 (416)
T ss_dssp             HCCEEEEEEESCGGGCTTHHHHHHHHHHHEEE
T ss_pred             CCCEEEEEECChHHhcCCHHHHHHHHHHHcCC
Confidence            34899999 99999999999999999998865

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.03  E-value=4.1e-10  Score=84.00  Aligned_cols=97  Identities=18%  Similarity=0.126  Sum_probs=70.0

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------  127 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------  127 (158)
                      ..+.+++....  .++.+|||+|||+|..++.+++.+. +|+++|+++.  +++.+++|.... ..+.+...|       
T Consensus        30 ~~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~--~~~~a~~~~~~~-~~i~~~~~d~~~~~~~  104 (215)
T 2pxx_A           30 SSFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSV--VVAAMQACYAHV-PQLRWETMDVRKLDFP  104 (215)
T ss_dssp             HHHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHH--HHHHHHHHTTTC-TTCEEEECCTTSCCSC
T ss_pred             HHHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHH--HHHHHHHhcccC-CCcEEEEcchhcCCCC
Confidence            34666665542  4677999999999999999998887 8999999965  999999887642 234444433       


Q ss_pred             -CCCcEEE-ecCCCC---------------CccHHHHHHHHHHHhcC
Q 031506          128 -LPPSHIC-SRVLQD---------------QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 -~~fD~Ii-~d~iy~---------------~~~~~~ll~tl~~ll~~  157 (158)
                       .+||+|+ ..++.+               ......+++.+..+|.+
T Consensus       105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  151 (215)
T 2pxx_A          105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP  151 (215)
T ss_dssp             SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE
T ss_pred             CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcC
Confidence             2799999 665532               23557778888777654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.02  E-value=6.5e-10  Score=88.27  Aligned_cols=79  Identities=18%  Similarity=0.234  Sum_probs=60.7

Q ss_pred             HHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC---------CC
Q 031506           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL---------PP  130 (158)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~---------~f  130 (158)
                      +.+.+.....++ +|||+|||+|.++..+++.+.+|+++|+++.  |++.+++|+..  .++++...|.         .|
T Consensus        37 ~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~--~~~~l~~~~~~--~~v~vi~~D~l~~~~~~~~~~  111 (271)
T 3fut_A           37 RRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLR--LRPVLEETLSG--LPVRLVFQDALLYPWEEVPQG  111 (271)
T ss_dssp             HHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGG--GHHHHHHHTTT--SSEEEEESCGGGSCGGGSCTT
T ss_pred             HHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHH--HHHHHHHhcCC--CCEEEEECChhhCChhhccCc
Confidence            334443333456 9999999999999999999999999999986  99999998763  2455554432         57


Q ss_pred             cEEEecCCCCCcc
Q 031506          131 SHICSRVLQDQSS  143 (158)
Q Consensus       131 D~Ii~d~iy~~~~  143 (158)
                      |.|+++++|+...
T Consensus       112 ~~iv~NlPy~iss  124 (271)
T 3fut_A          112 SLLVANLPYHIAT  124 (271)
T ss_dssp             EEEEEEECSSCCH
T ss_pred             cEEEecCcccccH
Confidence            8888999998754

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.01  E-value=2e-09  Score=96.73  Aligned_cols=100  Identities=13%  Similarity=0.059  Sum_probs=75.2

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHc------CC-cceEEE
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMN------KL-NCRLLM  125 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n------~~-~~~~~~  125 (158)
                      ....+++.......++.+|||+|||+|.+++.+++.+   .+|+++|+++.  |++.+++++...      +. ++++..
T Consensus       707 eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~e--mLe~AReRLa~~lnAkr~gl~nVefiq  784 (950)
T 3htx_A          707 KQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPK--GLARAAKMLHVKLNKEACNVKSATLYD  784 (950)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHH--HHHHHHHHHHHHTTTTCSSCSEEEEEE
T ss_pred             HHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHH--HHHHHHHHhhhccchhhcCCCceEEEE
Confidence            3444555544334478899999999999999999988   69999999965  999999877642      22 345554


Q ss_pred             cCC--------CCcEEE-ecCCCCCccHH--HHHHHHHHHhcC
Q 031506          126 TSL--------PPSHIC-SRVLQDQSSLR--LIIIEVGIILLS  157 (158)
Q Consensus       126 ~d~--------~fD~Ii-~d~iy~~~~~~--~ll~tl~~ll~~  157 (158)
                      .|.        +||+|+ .+++.|.....  .+++.+..+|.+
T Consensus       785 GDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKP  827 (950)
T 3htx_A          785 GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP  827 (950)
T ss_dssp             SCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCC
Confidence            432        799999 99998877633  588888887765

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.01  E-value=1.1e-09  Score=83.80  Aligned_cols=86  Identities=10%  Similarity=-0.035  Sum_probs=64.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----------CCCcEEE-
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-----------LPPSHIC-  134 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-----------~~fD~Ii-  134 (158)
                      .+.+|||+|||+|..++.+|+.+  .+|+++|+++.  +++.+++|+..+++. +++...|           ..||.|+ 
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~--~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~  111 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSP--GVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL  111 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHH--HHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHH--HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence            56789999999999999888764  48999999965  999999999988763 5554332           3799999 


Q ss_pred             e--cCCCCCccH------HHHHHHHHHHhcC
Q 031506          135 S--RVLQDQSSL------RLIIIEVGIILLS  157 (158)
Q Consensus       135 ~--d~iy~~~~~------~~ll~tl~~ll~~  157 (158)
                      .  ||.......      +.+++.+..+|.+
T Consensus       112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp  142 (218)
T 3dxy_A          112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQL  142 (218)
T ss_dssp             ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEE
T ss_pred             eCCCCccchhhhhhhhhhHHHHHHHHHHcCC
Confidence            5  554333332      3588888887764

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.01  E-value=2.8e-09  Score=89.41  Aligned_cols=97  Identities=11%  Similarity=-0.025  Sum_probs=68.4

Q ss_pred             HHHHHhcccCCCCCeEEEeccCCCHHHHHHhh-cCC-EEEEEecCChHHHHHHHHHHH-------HHcCC---cceEEEc
Q 031506           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVC-------EMNKL---NCRLLMT  126 (158)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~~n~-------~~n~~---~~~~~~~  126 (158)
                      ...+.......++.+|||||||+|.+.+.+++ .++ +|+++|+++.  +++.+++|+       +.+++   ++.+...
T Consensus       162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~--~lelAr~n~e~frkr~~~~Gl~~~rVefi~G  239 (438)
T 3uwp_A          162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADI--PAKYAETMDREFRKWMKWYGKKHAEYTLERG  239 (438)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHH--HHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence            33343333345778999999999999997775 466 5999999965  888887765       33444   3555555


Q ss_pred             CC----------CCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          127 SL----------PPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       127 d~----------~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      |.          .||+|+++++|+.+.....++.+...|.+
T Consensus       240 D~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKP  280 (438)
T 3uwp_A          240 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKE  280 (438)
T ss_dssp             CTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCT
T ss_pred             cccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCC
Confidence            53          68999966667777777777776665554

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.01  E-value=1e-09  Score=90.89  Aligned_cols=80  Identities=15%  Similarity=-0.008  Sum_probs=62.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHHHHc---------------CCc-ceEEEcCC---
Q 031506           70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMN---------------KLN-CRLLMTSL---  128 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~-g-~~v~~tD~~~~~~~l~~~~~n~~~n---------------~~~-~~~~~~d~---  128 (158)
                      ++.+|||+|||||..++.+++. + .+|+++|+++.  +++.+++|++.|               ++. +.+...|.   
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~--av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISED--AYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHH--HHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHH--HHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence            6789999999999999988886 4 48999999965  999999999999               765 55555442   


Q ss_pred             ------CCcEEEecCCCCCccHHHHHHHHHHH
Q 031506          129 ------PPSHICSRVLQDQSSLRLIIIEVGII  154 (158)
Q Consensus       129 ------~fD~Ii~d~iy~~~~~~~ll~tl~~l  154 (158)
                            +||+|+.||++..   .++++....+
T Consensus       125 ~~~~~~~fD~I~lDP~~~~---~~~l~~a~~~  153 (378)
T 2dul_A          125 MAERHRYFHFIDLDPFGSP---MEFLDTALRS  153 (378)
T ss_dssp             HHHSTTCEEEEEECCSSCC---HHHHHHHHHH
T ss_pred             HHhccCCCCEEEeCCCCCH---HHHHHHHHHh
Confidence                  6999999996542   3445444433

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.00  E-value=1.1e-09  Score=87.90  Aligned_cols=84  Identities=18%  Similarity=0.163  Sum_probs=62.2

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-----  127 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-----  127 (158)
                      .+...+.......++.+|||+|||+|.+++.+++.+.   +|+++|+++.  +++.+++|++.+++. +.+...|     
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~--~~~~a~~~~~~~g~~~v~~~~~d~~~~~  139 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK--ICEIAKRNVERLGIENVIFVCGDGYYGV  139 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHH--HHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCeEEEECChhhcc
Confidence            3444454433445778999999999999998888755   4999999965  999999999988754 4554443     


Q ss_pred             ---CCCcEEE-ecCCCCCc
Q 031506          128 ---LPPSHIC-SRVLQDQS  142 (158)
Q Consensus       128 ---~~fD~Ii-~d~iy~~~  142 (158)
                         .+||+|+ ..++.+..
T Consensus       140 ~~~~~fD~Iv~~~~~~~~~  158 (317)
T 1dl5_A          140 PEFSPYDVIFVTVGVDEVP  158 (317)
T ss_dssp             GGGCCEEEEEECSBBSCCC
T ss_pred             ccCCCeEEEEEcCCHHHHH
Confidence               2799999 66665543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.00  E-value=2.4e-09  Score=81.92  Aligned_cols=83  Identities=16%  Similarity=0.094  Sum_probs=61.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcC--------CCCcEEEecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTS--------LPPSHICSRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d--------~~fD~Ii~d~i  138 (158)
                      .++.+|||+|||+|..++.+++.+.+|+++|+++.  +++.+++|...+++  ++.+...|        .+||+|++++.
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  167 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEE--FYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVR  167 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHH--HHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSS
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHH--HHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECCc
Confidence            46789999999999999988888889999999965  99999999988775  24444332        26999996554


Q ss_pred             CCCccHHHHHHHHHHHhcC
Q 031506          139 QDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       139 y~~~~~~~ll~tl~~ll~~  157 (158)
                          ....+++.+..+|.+
T Consensus       168 ----~~~~~l~~~~~~L~~  182 (248)
T 2yvl_A          168 ----EPWHYLEKVHKSLME  182 (248)
T ss_dssp             ----CGGGGHHHHHHHBCT
T ss_pred             ----CHHHHHHHHHHHcCC
Confidence                233445555555543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.00  E-value=1.3e-09  Score=81.93  Aligned_cols=90  Identities=12%  Similarity=0.117  Sum_probs=64.3

Q ss_pred             EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEE
Q 031506           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLM  125 (158)
Q Consensus        50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~  125 (158)
                      +.|........ +.+.....++.+|||+|||+|..+..+++.+   .+|+++|.++.  +++.+++|+..++.. +.+..
T Consensus        58 ~~~~~~~~~~~-~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~v~~~~  134 (215)
T 2yxe_A           58 QTISAIHMVGM-MCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPE--LAEKAERTLRKLGYDNVIVIV  134 (215)
T ss_dssp             EEECCHHHHHH-HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHH--HHHHHHHHHHHHTCTTEEEEE
T ss_pred             cEeCcHHHHHH-HHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCCeEEEE
Confidence            34544444443 3333344567899999999999999888765   79999999965  999999999876643 44443


Q ss_pred             cC--------CCCcEEE-ecCCCCCc
Q 031506          126 TS--------LPPSHIC-SRVLQDQS  142 (158)
Q Consensus       126 ~d--------~~fD~Ii-~d~iy~~~  142 (158)
                      .|        .+||+|+ ..++++..
T Consensus       135 ~d~~~~~~~~~~fD~v~~~~~~~~~~  160 (215)
T 2yxe_A          135 GDGTLGYEPLAPYDRIYTTAAGPKIP  160 (215)
T ss_dssp             SCGGGCCGGGCCEEEEEESSBBSSCC
T ss_pred             CCcccCCCCCCCeeEEEECCchHHHH
Confidence            32        2799999 66666544

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.00  E-value=2e-09  Score=82.68  Aligned_cols=84  Identities=17%  Similarity=0.112  Sum_probs=65.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-----------------
Q 031506           70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-----------------  127 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-----------------  127 (158)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.++..  +.+...|                 
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEE--WTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHH--HHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            5779999999999999988876   569999999965  999999999887764  3443321                 


Q ss_pred             --------CCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 --------LPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 --------~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                              .+||+|+++  +....+..+++.+..+|.+
T Consensus       138 ~~~f~~~~~~fD~I~~~--~~~~~~~~~l~~~~~~L~p  173 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLD--ADKENYPNYYPLILKLLKP  173 (239)
T ss_dssp             GTTTCCSTTCEEEEEEC--SCGGGHHHHHHHHHHHEEE
T ss_pred             cccccCCCCCcCEEEEe--CCHHHHHHHHHHHHHHcCC
Confidence                    569999955  2356667788888777653

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.00  E-value=1.7e-09  Score=82.64  Aligned_cols=106  Identities=14%  Similarity=0.164  Sum_probs=70.7

Q ss_pred             ceEecchH-HHHHHHH---HhcccCCCCCeEEEeccCCCHHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHHHHcCCcc
Q 031506           48 GLFVWPCS-VILAEYV---WQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNC  121 (158)
Q Consensus        48 g~~vW~~~-~~la~~l---~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~~  121 (158)
                      .++.|... ..++..+   .......++.+|||+|||+|..++.+++. + .+|+++|+++.  +++.+++|++.+ .++
T Consensus        48 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~--~~~~a~~~~~~~-~~v  124 (230)
T 1fbn_A           48 EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPR--IMRELLDACAER-ENI  124 (230)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHH--HHHHHHHHTTTC-TTE
T ss_pred             eeeeeCcchhHHHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHH--HHHHHHHHhhcC-CCe
Confidence            45667432 2222444   22222336789999999999999988877 4 69999999965  999999998765 334


Q ss_pred             eEEEcC-----------CCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          122 RLLMTS-----------LPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       122 ~~~~~d-----------~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .+...|           ..||+|+.++. .......+++.+..+|.+
T Consensus       125 ~~~~~d~~~~~~~~~~~~~~D~v~~~~~-~~~~~~~~l~~~~~~Lkp  170 (230)
T 1fbn_A          125 IPILGDANKPQEYANIVEKVDVIYEDVA-QPNQAEILIKNAKWFLKK  170 (230)
T ss_dssp             EEEECCTTCGGGGTTTSCCEEEEEECCC-STTHHHHHHHHHHHHEEE
T ss_pred             EEEECCCCCcccccccCccEEEEEEecC-ChhHHHHHHHHHHHhCCC
Confidence            443332           25899996542 334457778888776653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.00  E-value=5.5e-10  Score=83.97  Aligned_cols=81  Identities=11%  Similarity=0.126  Sum_probs=65.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc----------CCCCcEEE-ecC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT----------SLPPSHIC-SRV  137 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~----------d~~fD~Ii-~d~  137 (158)
                      .++.+|||+|||+|..+..+++.+.+++++|+++.  +++.++++..      ++...          +.+||+|+ .++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~--~~~~~~~~~~------~~~~~d~~~~~~~~~~~~fD~v~~~~~  102 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPE--AAEQAKEKLD------HVVLGDIETMDMPYEEEQFDCVIFGDV  102 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHH--HHHHHHTTSS------EEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHH--HHHHHHHhCC------cEEEcchhhcCCCCCCCccCEEEECCh
Confidence            46789999999999999988888889999999965  8888876542      12221          23799999 999


Q ss_pred             CCCCccHHHHHHHHHHHhcC
Q 031506          138 LQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +++..+...+++.+..+|.+
T Consensus       103 l~~~~~~~~~l~~~~~~L~~  122 (230)
T 3cc8_A          103 LEHLFDPWAVIEKVKPYIKQ  122 (230)
T ss_dssp             GGGSSCHHHHHHHTGGGEEE
T ss_pred             hhhcCCHHHHHHHHHHHcCC
Confidence            99998889999888877653

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.00  E-value=4.2e-10  Score=90.31  Aligned_cols=105  Identities=21%  Similarity=0.114  Sum_probs=74.5

Q ss_pred             EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHc----CCcceEE
Q 031506           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN----KLNCRLL  124 (158)
Q Consensus        50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n----~~~~~~~  124 (158)
                      .+-.++..|.+.+.......++++|||+|||||.++..+++.|+ +|+++|+++.  |++.+.++-...    ..+++..
T Consensus        65 yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~--mL~~a~r~~~rv~~~~~~ni~~l  142 (291)
T 3hp7_A           65 YVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTN--QLVWKLRQDDRVRSMEQYNFRYA  142 (291)
T ss_dssp             SSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSS--CSCHHHHTCTTEEEECSCCGGGC
T ss_pred             cccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHH--HHHHHHHhCcccceecccCceec
Confidence            34567888888887766667889999999999999998888886 9999999987  887633321110    0111111


Q ss_pred             Ec---CC-CCcEEEecCCCCCccHHHHHHHHHHHhcCC
Q 031506          125 MT---SL-PPSHICSRVLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       125 ~~---d~-~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                      ..   .. .||+|++|..++  ++..++..+..+|.++
T Consensus       143 ~~~~l~~~~fD~v~~d~sf~--sl~~vL~e~~rvLkpG  178 (291)
T 3hp7_A          143 EPVDFTEGLPSFASIDVSFI--SLNLILPALAKILVDG  178 (291)
T ss_dssp             CGGGCTTCCCSEEEECCSSS--CGGGTHHHHHHHSCTT
T ss_pred             chhhCCCCCCCEEEEEeeHh--hHHHHHHHHHHHcCcC
Confidence            11   12 399999888765  4578888888887653

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.99  E-value=1.8e-09  Score=82.07  Aligned_cols=106  Identities=13%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             ceEecchH-HHHHHHHHhc--ccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcce
Q 031506           48 GLFVWPCS-VILAEYVWQQ--RYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR  122 (158)
Q Consensus        48 g~~vW~~~-~~la~~l~~~--~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~  122 (158)
                      .+..|..- ..++..+...  ....++.+|||+|||||..+..+++..  .+|+++|+++.  |++.+.++++... ++.
T Consensus        32 ~y~~~~~~~~~l~~~~~~~l~~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~--~l~~~~~~a~~~~-~v~  108 (210)
T 1nt2_A           32 GYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAK--PFEKLLELVRERN-NII  108 (210)
T ss_dssp             TEEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHH--HHHHHHHHHHHCS-SEE
T ss_pred             hhhhcChhHHHHHHHHHhhcccCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHH--HHHHHHHHHhcCC-CeE
Confidence            56677542 2334444332  122367799999999999999888764  59999999964  7776666555321 222


Q ss_pred             EEEcC-----------CCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          123 LLMTS-----------LPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       123 ~~~~d-----------~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ....|           .+||+|+++.. .......+++.+..+|++
T Consensus       109 ~~~~d~~~~~~~~~~~~~fD~V~~~~~-~~~~~~~~l~~~~r~Lkp  153 (210)
T 1nt2_A          109 PLLFDASKPWKYSGIVEKVDLIYQDIA-QKNQIEILKANAEFFLKE  153 (210)
T ss_dssp             EECSCTTCGGGTTTTCCCEEEEEECCC-STTHHHHHHHHHHHHEEE
T ss_pred             EEEcCCCCchhhcccccceeEEEEecc-ChhHHHHHHHHHHHHhCC
Confidence            22211           26999997743 334445567888877764

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.99  E-value=1.4e-09  Score=85.81  Aligned_cols=99  Identities=10%  Similarity=-0.038  Sum_probs=71.6

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--C-CEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcC-
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTS-  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g-~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d-  127 (158)
                      .++..++.++.    ..++.+|||+|||+|..++.+++.  + .+|+++|+++.  +++.+++|++.+++ ++.+...| 
T Consensus        70 ~~s~l~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~--~l~~~~~~~~~~g~~~v~~~~~D~  143 (274)
T 3ajd_A           70 ISSMIPPIVLN----PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKT--RTKALKSNINRMGVLNTIIINADM  143 (274)
T ss_dssp             SGGGHHHHHHC----CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHH--HHHHHHHHHHHTTCCSEEEEESCH
T ss_pred             HHHHHHHHHhC----CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHH--HHHHHHHHHHHhCCCcEEEEeCCh
Confidence            34444444442    235779999999999999987763  4 59999999965  99999999999886 35554432 


Q ss_pred             -----------CCCcEEEecCCCCC-------------------ccHHHHHHHHHHHhcC
Q 031506          128 -----------LPPSHICSRVLQDQ-------------------SSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 -----------~~fD~Ii~d~iy~~-------------------~~~~~ll~tl~~ll~~  157 (158)
                                 .+||+|++|++|..                   .....+++.+..+|.+
T Consensus       144 ~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp  203 (274)
T 3ajd_A          144 RKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK  203 (274)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE
T ss_pred             HhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                       37999998877654                   3446777777776653

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.99  E-value=2e-09  Score=84.51  Aligned_cols=82  Identities=13%  Similarity=0.050  Sum_probs=61.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcC-------CCCcEEEec
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTS-------LPPSHICSR  136 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d-------~~fD~Ii~d  136 (158)
                      .++.+|||+|||+|.+++.+++.   +.+|+++|+++.  +++.+++|++.+++  ++.+...|       .+||+|++|
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~  188 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREE--FAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLD  188 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHH--HHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEEC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHH--HHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEEC
Confidence            45789999999999999988877   469999999965  99999999998876  34444433       269999977


Q ss_pred             CCCCCccHHHHHHHHHHHhc
Q 031506          137 VLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       137 ~iy~~~~~~~ll~tl~~ll~  156 (158)
                      +.+..    .+++.+..+|.
T Consensus       189 ~~~~~----~~l~~~~~~L~  204 (277)
T 1o54_A          189 VPDPW----NYIDKCWEALK  204 (277)
T ss_dssp             CSCGG----GTHHHHHHHEE
T ss_pred             CcCHH----HHHHHHHHHcC
Confidence            65443    44444444443

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.98  E-value=7.4e-10  Score=87.13  Aligned_cols=82  Identities=11%  Similarity=0.125  Sum_probs=60.9

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC---------
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL---------  128 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~---------  128 (158)
                      +++.+.......++.+|||+|||+|.++..+++.+.+|+++|+++.  |++.+++|+.. ..++++...|.         
T Consensus        17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~--~~~~~~~~~~~-~~~v~~i~~D~~~~~~~~~~   93 (255)
T 3tqs_A           17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRD--LVAFLQKKYNQ-QKNITIYQNDALQFDFSSVK   93 (255)
T ss_dssp             HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHH--HHHHHHHHHTT-CTTEEEEESCTTTCCGGGSC
T ss_pred             HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHH--HHHHHHHHHhh-CCCcEEEEcchHhCCHHHhc
Confidence            3344444434446789999999999999999999999999999965  99999999875 22455555443         


Q ss_pred             ---CCcEEEecCCCCCcc
Q 031506          129 ---PPSHICSRVLQDQSS  143 (158)
Q Consensus       129 ---~fD~Ii~d~iy~~~~  143 (158)
                         +|| |+++++|+...
T Consensus        94 ~~~~~~-vv~NlPY~is~  110 (255)
T 3tqs_A           94 TDKPLR-VVGNLPYNIST  110 (255)
T ss_dssp             CSSCEE-EEEECCHHHHH
T ss_pred             cCCCeE-EEecCCcccCH
Confidence               245 55999998654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.98  E-value=2e-09  Score=82.73  Aligned_cols=84  Identities=11%  Similarity=0.009  Sum_probs=65.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------------CCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------------LPP  130 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------------~~f  130 (158)
                      ++++|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+++.  +++...|              .+|
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~--~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f  149 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPN--ATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF  149 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHH--HHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            5679999999999999988875   469999999965  999999999887764  4444332              469


Q ss_pred             cEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          131 SHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       131 D~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      |+|++|..  ...+..+++.+..+|.+
T Consensus       150 D~V~~d~~--~~~~~~~l~~~~~~Lkp  174 (232)
T 3cbg_A          150 DLIFIDAD--KRNYPRYYEIGLNLLRR  174 (232)
T ss_dssp             EEEEECSC--GGGHHHHHHHHHHTEEE
T ss_pred             CEEEECCC--HHHHHHHHHHHHHHcCC
Confidence            99996543  45677778877776654

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.98  E-value=1.1e-09  Score=82.28  Aligned_cols=84  Identities=18%  Similarity=0.113  Sum_probs=64.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------C-CcEEEec
Q 031506           70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------P-PSHICSR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~-fD~Ii~d  136 (158)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+++.  +++...|.       . ||+|++|
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  133 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRD--NVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMD  133 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHH--HHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEc
Confidence            5679999999999999988876   579999999965  999999999987764  44443321       1 9999965


Q ss_pred             CCCCCccHHHHHHHHHHHhcC
Q 031506          137 VLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .  .......+++.+..+|.+
T Consensus       134 ~--~~~~~~~~l~~~~~~Lkp  152 (210)
T 3c3p_A          134 C--DVFNGADVLERMNRCLAK  152 (210)
T ss_dssp             T--TTSCHHHHHHHHGGGEEE
T ss_pred             C--ChhhhHHHHHHHHHhcCC
Confidence            3  345677788877766653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.98  E-value=2.4e-09  Score=81.87  Aligned_cols=85  Identities=18%  Similarity=0.190  Sum_probs=61.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-----------CCCCcEEE
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-----------SLPPSHIC  134 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-----------d~~fD~Ii  134 (158)
                      .++.+|||+|||+|..+..+++. |  .+|+++|+++.  +++.+.++++.+ .++.+...           +.+||+|+
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~--~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~  152 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHR--SGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIF  152 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHH--HHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHH--HHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEE
Confidence            35789999999999999988876 2  69999999964  888777777765 23333322           23699999


Q ss_pred             ecCCCCCccHHHHHHHHHHHhcC
Q 031506          135 SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       135 ~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +|+. .......++..+..+|.+
T Consensus       153 ~~~~-~~~~~~~~~~~~~~~Lkp  174 (233)
T 2ipx_A          153 ADVA-QPDQTRIVALNAHTFLRN  174 (233)
T ss_dssp             ECCC-CTTHHHHHHHHHHHHEEE
T ss_pred             EcCC-CccHHHHHHHHHHHHcCC
Confidence            7776 444445567767666653

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.98  E-value=1.1e-09  Score=83.70  Aligned_cols=84  Identities=11%  Similarity=0.131  Sum_probs=64.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc-----------CCCCcEEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT-----------SLPPSHIC  134 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~-----------d~~fD~Ii  134 (158)
                      ++.+|||+|||+|..++.+++.  +.+|+++|+++.  +++.+++|+..+++.  +.+...           +.+||+|+
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  131 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDER--RYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF  131 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHH--HHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence            5679999999999999988887  579999999965  999999999988763  444332           23699999


Q ss_pred             ecCCCCCccHHHHHHHHHHHhcC
Q 031506          135 SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       135 ~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ++...  .....+++.+..+|.+
T Consensus       132 ~~~~~--~~~~~~l~~~~~~L~p  152 (233)
T 2gpy_A          132 IDAAK--GQYRRFFDMYSPMVRP  152 (233)
T ss_dssp             EEGGG--SCHHHHHHHHGGGEEE
T ss_pred             ECCCH--HHHHHHHHHHHHHcCC
Confidence            44432  3567777777666543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.97  E-value=5.4e-10  Score=86.56  Aligned_cols=103  Identities=21%  Similarity=0.120  Sum_probs=74.0

Q ss_pred             ecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcC----CcceEEE
Q 031506           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNK----LNCRLLM  125 (158)
Q Consensus        51 vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~----~~~~~~~  125 (158)
                      +..++..|.+.+.......++++|||+|||||.++..+++.|+ +|+++|+++.  |++.+++|.....    .+++...
T Consensus        18 vsrg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~--ml~~a~~~~~~~~~~~~~~~~~~~   95 (232)
T 3opn_A           18 VSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTN--QLAWKIRSDERVVVMEQFNFRNAV   95 (232)
T ss_dssp             SSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCC--CCCHHHHTCTTEEEECSCCGGGCC
T ss_pred             cCCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHH--HHHHHHHhCccccccccceEEEeC
Confidence            3467778888777766566788999999999999999998886 9999999987  8887666543211    1121111


Q ss_pred             -cCC---CCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          126 -TSL---PPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       126 -~d~---~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                       .+.   .||.+.+|+++..  +..+++.+..+|.+
T Consensus        96 ~~~~~~~~~d~~~~D~v~~~--l~~~l~~i~rvLkp  129 (232)
T 3opn_A           96 LADFEQGRPSFTSIDVSFIS--LDLILPPLYEILEK  129 (232)
T ss_dssp             GGGCCSCCCSEEEECCSSSC--GGGTHHHHHHHSCT
T ss_pred             HhHcCcCCCCEEEEEEEhhh--HHHHHHHHHHhccC
Confidence             122   3788778877654  37788888888765

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.97  E-value=3.1e-09  Score=85.01  Aligned_cols=86  Identities=13%  Similarity=0.169  Sum_probs=69.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEE-ec
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHIC-SR  136 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii-~d  136 (158)
                      .++.+|||+|||+|..+..+++.  +.+++++|++ .  +++.+++++..+++.  +++...|.       .||+|+ .+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~  240 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-S--VLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPN  240 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-H--HHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEES
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-H--HHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcc
Confidence            35679999999999999988876  5699999998 6  999999999887764  55555543       499999 89


Q ss_pred             CCCCC--ccHHHHHHHHHHHhcC
Q 031506          137 VLQDQ--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~--~~~~~ll~tl~~ll~~  157 (158)
                      ++++.  +....+++.+...|.+
T Consensus       241 ~l~~~~~~~~~~~l~~~~~~L~p  263 (335)
T 2r3s_A          241 FLHHFDVATCEQLLRKIKTALAV  263 (335)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEE
T ss_pred             hhccCCHHHHHHHHHHHHHhCCC
Confidence            99887  4557888888877654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.96  E-value=1.3e-09  Score=85.58  Aligned_cols=84  Identities=11%  Similarity=0.099  Sum_probs=63.2

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHc-CC-cceEEEcCC-------CCcEEE
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMN-KL-NCRLLMTSL-------PPSHIC  134 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n-~~-~~~~~~~d~-------~fD~Ii  134 (158)
                      ...++.+|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+ +. ++.+...|.       +||+|+
T Consensus       107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi  184 (275)
T 1yb2_A          107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDED--NLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVI  184 (275)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHH--HHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEE
T ss_pred             CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEE
Confidence            3446789999999999999988876   679999999965  999999999987 64 355554432       699999


Q ss_pred             ecCCCCCccHHHHHHHHHHHhc
Q 031506          135 SRVLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       135 ~d~iy~~~~~~~ll~tl~~ll~  156 (158)
                      +++.    ....+++.+..+|.
T Consensus       185 ~~~~----~~~~~l~~~~~~Lk  202 (275)
T 1yb2_A          185 ADIP----DPWNHVQKIASMMK  202 (275)
T ss_dssp             ECCS----CGGGSHHHHHHTEE
T ss_pred             EcCc----CHHHHHHHHHHHcC
Confidence            7654    33455666655544

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.96  E-value=5.2e-10  Score=86.87  Aligned_cols=85  Identities=14%  Similarity=0.032  Sum_probs=66.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc--------------CCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT--------------SLP  129 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~--------------d~~  129 (158)
                      .++++|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+++.  +++...              +.+
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~--~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~  136 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEG--WTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQ  136 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCS--SCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSC
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCC
Confidence            35679999999999999988874   569999999987  999999999988764  444433              247


Q ss_pred             CcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          130 PSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       130 fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ||+|++|..  ...+..+++.+..+|.+
T Consensus       137 fD~V~~d~~--~~~~~~~l~~~~~~Lkp  162 (242)
T 3r3h_A          137 FDFIFIDAD--KTNYLNYYELALKLVTP  162 (242)
T ss_dssp             EEEEEEESC--GGGHHHHHHHHHHHEEE
T ss_pred             EeEEEEcCC--hHHhHHHHHHHHHhcCC
Confidence            999996553  56677778887777654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.96  E-value=3.2e-10  Score=89.34  Aligned_cols=87  Identities=20%  Similarity=0.266  Sum_probs=62.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHhh-cCCEEEEEecCChHHHHHHHHHHHHHc-----------------CC-----------
Q 031506           69 FSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMN-----------------KL-----------  119 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~n~~~n-----------------~~-----------  119 (158)
                      .++.+|||+|||+|...+++++ .+.+|+++|+++.  |++.+++++...                 +.           
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  147 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEV--NRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  147 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHH--HHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHH--HHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence            4678999999999997766555 4679999999965  999888865421                 10           


Q ss_pred             ---cceEEEcC--------------CCCcEEE-ecCCCC----CccHHHHHHHHHHHhcC
Q 031506          120 ---NCRLLMTS--------------LPPSHIC-SRVLQD----QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       120 ---~~~~~~~d--------------~~fD~Ii-~d~iy~----~~~~~~ll~tl~~ll~~  157 (158)
                         ...+...|              .+||+|+ +.++++    .+....+++.+..+|.+
T Consensus       148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp  207 (289)
T 2g72_A          148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP  207 (289)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE
T ss_pred             HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC
Confidence               01111111              1399999 888887    66788899998888765

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.95  E-value=4.2e-09  Score=81.27  Aligned_cols=85  Identities=9%  Similarity=0.003  Sum_probs=66.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc---------------CC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT---------------SL  128 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~---------------d~  128 (158)
                      .++++|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+++.  +++...               +.
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~--~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~  146 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDRE--AYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG  146 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHH--HHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence            35679999999999999988875   579999999965  999999999988774  444322               23


Q ss_pred             CCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          129 PPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       129 ~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +||+|+.|.  ....+..+++.+..+|.+
T Consensus       147 ~fD~I~~d~--~~~~~~~~l~~~~~~L~p  173 (237)
T 3c3y_A          147 SYDFGFVDA--DKPNYIKYHERLMKLVKV  173 (237)
T ss_dssp             CEEEEEECS--CGGGHHHHHHHHHHHEEE
T ss_pred             CcCEEEECC--chHHHHHHHHHHHHhcCC
Confidence            699999664  345677888888777654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.94  E-value=9.5e-10  Score=83.83  Aligned_cols=77  Identities=18%  Similarity=0.123  Sum_probs=55.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc----------CCCCcEEEecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT----------SLPPSHICSRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~----------d~~fD~Ii~d~i  138 (158)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.  +++.+++|.    .++.+...          +.+||+|++.  
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~----~~~~~~~~d~~~~~~~~~~~~fD~v~~~--  118 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPE--LLKLARANA----PHADVYEWNGKGELPAGLGAPFGLIVSR--  118 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHH--HHHHHHHHC----TTSEEEECCSCSSCCTTCCCCEEEEEEE--
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHH--HHHHHHHhC----CCceEEEcchhhccCCcCCCCEEEEEeC--
Confidence            35789999999999999999999999999999965  999999881    22333333          2379999933  


Q ss_pred             CCCccHHHHHHHHHHHhc
Q 031506          139 QDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       139 y~~~~~~~ll~tl~~ll~  156 (158)
                         .....+++.+..+|.
T Consensus       119 ---~~~~~~l~~~~~~Lk  133 (226)
T 3m33_A          119 ---RGPTSVILRLPELAA  133 (226)
T ss_dssp             ---SCCSGGGGGHHHHEE
T ss_pred             ---CCHHHHHHHHHHHcC
Confidence               233444555555544

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.94  E-value=3.1e-09  Score=85.58  Aligned_cols=69  Identities=16%  Similarity=0.063  Sum_probs=55.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcC--------CCCcEEEec
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTS--------LPPSHICSR  136 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d--------~~fD~Ii~d  136 (158)
                      .++.+|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+++ ++.+...|        .+||+|++|
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~--~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDEN--RLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHH--HHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHH--HHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEe
Confidence            35779999999999999988765   258999999975  99999999998876 34554433        279999977


Q ss_pred             CCC
Q 031506          137 VLQ  139 (158)
Q Consensus       137 ~iy  139 (158)
                      +++
T Consensus       195 ~Pc  197 (315)
T 1ixk_A          195 APC  197 (315)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            664

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.93  E-value=5.3e-09  Score=88.07  Aligned_cols=88  Identities=14%  Similarity=0.079  Sum_probs=64.9

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc-CC-EEEEEecCChHHHHHHH-------HHHHHHcCC---cceEEEc--------
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNM-------RRVCEMNKL---NCRLLMT--------  126 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~-g~-~v~~tD~~~~~~~l~~~-------~~n~~~n~~---~~~~~~~--------  126 (158)
                      ...++.+|||||||+|.+++.+++. ++ +|+++|+++.  +++.+       ++|+..+++   ++.+...        
T Consensus       239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~--~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~  316 (433)
T 1u2z_A          239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDD--ASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR  316 (433)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHH--HHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccc
Confidence            3446789999999999999988875 54 8999999975  77766       999988773   3444332        


Q ss_pred             ----CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          127 ----SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       127 ----d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                          +.+||+|+ +.++ +.+.....++.+...|.+
T Consensus       317 ~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKp  351 (433)
T 1u2z_A          317 VAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKV  351 (433)
T ss_dssp             HHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCT
T ss_pred             cccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCC
Confidence                12699999 6666 446677777777766654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.93  E-value=9.8e-09  Score=83.42  Aligned_cols=86  Identities=9%  Similarity=0.072  Sum_probs=69.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC------CCcEEE-ecC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL------PPSHIC-SRV  137 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~------~fD~Ii-~d~  137 (158)
                      .++.+|||+|||+|..+..+++.  +.+++++|+ +.  +++.+++|+..+++.  +.+...|.      .+|+|+ ..+
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~v  265 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PG--AIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRI  265 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GG--GHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESC
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HH--HHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEech
Confidence            45679999999999999988877  459999999 75  999999999887654  55555543      469999 999


Q ss_pred             CCCCcc--HHHHHHHHHHHhcC
Q 031506          138 LQDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       138 iy~~~~--~~~ll~tl~~ll~~  157 (158)
                      +++.++  ...+++.+...|.+
T Consensus       266 lh~~~d~~~~~~l~~~~~~L~p  287 (359)
T 1x19_A          266 LYSANEQLSTIMCKKAFDAMRS  287 (359)
T ss_dssp             GGGSCHHHHHHHHHHHHTTCCT
T ss_pred             hccCCHHHHHHHHHHHHHhcCC
Confidence            987766  78888888877764

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.92  E-value=6.4e-09  Score=84.60  Aligned_cols=85  Identities=18%  Similarity=0.044  Sum_probs=68.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC------CCcEEE-ecCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL------PPSHIC-SRVL  138 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~------~fD~Ii-~d~i  138 (158)
                      ++.+|||+|||+|..++.+++..  .+++++|+ +.  +++.+++|+..+++.  +.+...|.      .||+|+ ..++
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl  258 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AG--PAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVL  258 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH--HHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCG
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HH--HHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccc
Confidence            56799999999999999888764  59999999 64  999999999887764  55555543      499999 9999


Q ss_pred             CCCccH--HHHHHHHHHHhcC
Q 031506          139 QDQSSL--RLIIIEVGIILLS  157 (158)
Q Consensus       139 y~~~~~--~~ll~tl~~ll~~  157 (158)
                      ++.+..  ..+++.+...|.+
T Consensus       259 ~~~~~~~~~~~l~~~~~~L~p  279 (374)
T 1qzz_A          259 LNWSDEDALTILRGCVRALEP  279 (374)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE
T ss_pred             cCCCHHHHHHHHHHHHHhcCC
Confidence            776654  4788888877654

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.92  E-value=3.3e-09  Score=90.02  Aligned_cols=82  Identities=10%  Similarity=0.009  Sum_probs=63.5

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--  127 (158)
                      +++..++..+.    ..++.+|||+|||+|..++.++++ +  ..|+++|+++.  +++.+++|++.+++.+.+...|  
T Consensus        88 ~ss~l~a~~L~----~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~--~l~~a~~n~~r~G~~v~~~~~Da~  161 (464)
T 3m6w_A           88 PSAQAVGVLLD----PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGK--RVRGLLENVERWGAPLAVTQAPPR  161 (464)
T ss_dssp             TTTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHH--HHHHHHHHHHHHCCCCEEECSCHH
T ss_pred             HHHHHHHHhcC----cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCeEEEEECCHH
Confidence            44555555553    236789999999999999988765 2  48999999965  9999999999998775555443  


Q ss_pred             -------CCCcEEEecCCCC
Q 031506          128 -------LPPSHICSRVLQD  140 (158)
Q Consensus       128 -------~~fD~Ii~d~iy~  140 (158)
                             .+||+|++|++|.
T Consensus       162 ~l~~~~~~~FD~Il~D~PcS  181 (464)
T 3m6w_A          162 ALAEAFGTYFHRVLLDAPCS  181 (464)
T ss_dssp             HHHHHHCSCEEEEEEECCCC
T ss_pred             HhhhhccccCCEEEECCCcC
Confidence                   3799999888873

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.91  E-value=3e-09  Score=82.73  Aligned_cols=84  Identities=15%  Similarity=0.077  Sum_probs=61.0

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------  128 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------  128 (158)
                      ..+.+.+.......++.+|||+|||+|.++..+++.+.+|+++|+++.  +++.+++|+... -++.+...|.       
T Consensus        16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~--~~~~a~~~~~~~-~~v~~~~~D~~~~~~~~   92 (244)
T 1qam_A           16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHK--LCKTTENKLVDH-DNFQVLNKDILQFKFPK   92 (244)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHH--HHHHHHHHTTTC-CSEEEECCCGGGCCCCS
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHH--HHHHHHHhhccC-CCeEEEEChHHhCCccc
Confidence            345555655444456789999999999999999999999999999965  999999988643 2344444432       


Q ss_pred             CCcE-EEecCCCCCc
Q 031506          129 PPSH-ICSRVLQDQS  142 (158)
Q Consensus       129 ~fD~-Ii~d~iy~~~  142 (158)
                      ..++ |+++++|+..
T Consensus        93 ~~~~~vv~nlPy~~~  107 (244)
T 1qam_A           93 NQSYKIFGNIPYNIS  107 (244)
T ss_dssp             SCCCEEEEECCGGGH
T ss_pred             CCCeEEEEeCCcccC
Confidence            1233 4499999754

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.91  E-value=3.3e-09  Score=81.23  Aligned_cols=82  Identities=12%  Similarity=0.194  Sum_probs=61.1

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC-------
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL-------  128 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~-------  128 (158)
                      +...+.+.....++.+|||+|||+|..++.+++.+ .+|+++|+++.  +++.+++|+..+++. +.+...|.       
T Consensus        79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  156 (235)
T 1jg1_A           79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPE--LVEFAKRNLERAGVKNVHVILGDGSKGFPPK  156 (235)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHH--HHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHH--HHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence            44444443334567799999999999999888876 79999999965  999999999887653 44444432       


Q ss_pred             -CCcEEE-ecCCCCC
Q 031506          129 -PPSHIC-SRVLQDQ  141 (158)
Q Consensus       129 -~fD~Ii-~d~iy~~  141 (158)
                       +||+|+ ..++.+.
T Consensus       157 ~~fD~Ii~~~~~~~~  171 (235)
T 1jg1_A          157 APYDVIIVTAGAPKI  171 (235)
T ss_dssp             CCEEEEEECSBBSSC
T ss_pred             CCccEEEECCcHHHH
Confidence             599999 6655543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.91  E-value=2.9e-09  Score=84.16  Aligned_cols=86  Identities=12%  Similarity=0.138  Sum_probs=63.5

Q ss_pred             CCCeEEEeccCCCHHHHHH----hhc--CCEE--EEEecCChHHHHHHHHHHHHHc-CCc-ceE--EE------------
Q 031506           70 SGANVVELGAGTSLPGLVA----AKV--GSNV--TLTDDSNRIEVLKNMRRVCEMN-KLN-CRL--LM------------  125 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~----a~~--g~~v--~~tD~~~~~~~l~~~~~n~~~n-~~~-~~~--~~------------  125 (158)
                      ++.+|||+|||+|.++..+    +..  +..|  +++|.++.  |++.+++++... ++. +.+  ..            
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~--ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAE--QIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHH--HHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHH--HHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence            4569999999999766422    222  3444  99999965  999999988653 221 222  11            


Q ss_pred             --cCCCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          126 --TSLPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       126 --~d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                        .+.+||+|+ +.++++.++.+..++.+..+|++
T Consensus       130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkp  164 (292)
T 2aot_A          130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGT  164 (292)
T ss_dssp             TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEE
T ss_pred             ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCC
Confidence              134799999 99999999999999999998875

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.90  E-value=4.5e-09  Score=83.75  Aligned_cols=104  Identities=17%  Similarity=0.170  Sum_probs=69.5

Q ss_pred             cchHHHHHHHHHhccc-CCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcC--------Ccc
Q 031506           52 WPCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNK--------LNC  121 (158)
Q Consensus        52 W~~~~~la~~l~~~~~-~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~--------~~~  121 (158)
                      |-...++.+++..... ..++.+|||+|||+|..+..+++. +.+|+++|+++.  |++.++++...++        .++
T Consensus        15 ~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~~~~~~~   92 (313)
T 3bgv_A           15 WMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADV--SVKQCQQRYEDMKNRRDSEYIFSA   92 (313)
T ss_dssp             HHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHHHHSSSCC-CCCEE
T ss_pred             HHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHH--HHHHHHHHHHHhhhcccccccceE
Confidence            4444444444432111 125679999999999999987765 459999999965  9999998887542        123


Q ss_pred             eEEEcC--------------CCCcEEE-ecCCCCC----ccHHHHHHHHHHHhcC
Q 031506          122 RLLMTS--------------LPPSHIC-SRVLQDQ----SSLRLIIIEVGIILLS  157 (158)
Q Consensus       122 ~~~~~d--------------~~fD~Ii-~d~iy~~----~~~~~ll~tl~~ll~~  157 (158)
                      .+...|              .+||+|+ +.++++.    +....+++.+..+|.+
T Consensus        93 ~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp  147 (313)
T 3bgv_A           93 EFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP  147 (313)
T ss_dssp             EEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE
T ss_pred             EEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC
Confidence            333332              1699999 8888776    3456777777766653

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.90  E-value=8.2e-09  Score=79.34  Aligned_cols=83  Identities=16%  Similarity=0.171  Sum_probs=61.3

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHc-CC-cceEEEcC--------CCCcEEE
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMN-KL-NCRLLMTS--------LPPSHIC  134 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n-~~-~~~~~~~d--------~~fD~Ii  134 (158)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|++.+ +. ++.+...|        .+||+|+
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~--~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~  171 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPH--HLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVA  171 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHH--HHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEE
Confidence            346789999999999999988887   569999999965  999999999887 52 34444433        2699999


Q ss_pred             ecCCCCCccHHHHHHHHHHHhc
Q 031506          135 SRVLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       135 ~d~iy~~~~~~~ll~tl~~ll~  156 (158)
                      +++.    ....+++.+..+|.
T Consensus       172 ~~~~----~~~~~l~~~~~~L~  189 (258)
T 2pwy_A          172 LDLM----EPWKVLEKAALALK  189 (258)
T ss_dssp             EESS----CGGGGHHHHHHHEE
T ss_pred             ECCc----CHHHHHHHHHHhCC
Confidence            6553    33355555555554

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.89  E-value=2.1e-09  Score=89.49  Aligned_cols=81  Identities=9%  Similarity=0.026  Sum_probs=62.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--C-CEEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEcC----------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMTS----------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~d----------~~fD~I  133 (158)
                      ++.+|||++||+|..|+.+++.  | .+|+++|+++.  +++.+++|++.|++.   +.+...|          .+||+|
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~--av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V  129 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSK--AIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYV  129 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHH--HHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEE
Confidence            4679999999999999988874  5 38999999965  999999999999985   4444333          169999


Q ss_pred             EecCCCCCccHHHHHHHHHHHh
Q 031506          134 CSRVLQDQSSLRLIIIEVGIIL  155 (158)
Q Consensus       134 i~d~iy~~~~~~~ll~tl~~ll  155 (158)
                      +.|| |..  ..++++....+|
T Consensus       130 ~lDP-~g~--~~~~l~~a~~~L  148 (392)
T 3axs_A          130 DLDP-FGT--PVPFIESVALSM  148 (392)
T ss_dssp             EECC-SSC--CHHHHHHHHHHE
T ss_pred             EECC-CcC--HHHHHHHHHHHh
Confidence            9999 432  245666555544

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.88  E-value=2.8e-09  Score=83.59  Aligned_cols=71  Identities=8%  Similarity=0.004  Sum_probs=59.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE-ecCCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC-SRVLQD  140 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii-~d~iy~  140 (158)
                      ....+|||||||+|.+++.+. .+..++++|+++.  +++.+++|+..++.+.++...|.       +||+|+ ...+.+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~--~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQG--LGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHH--HHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHH--HHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence            357799999999999999877 5569999999975  99999999999998887776654       899999 776655


Q ss_pred             Cc
Q 031506          141 QS  142 (158)
Q Consensus       141 ~~  142 (158)
                      .+
T Consensus       181 LE  182 (253)
T 3frh_A          181 LE  182 (253)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.88  E-value=1.7e-08  Score=82.56  Aligned_cols=85  Identities=19%  Similarity=0.235  Sum_probs=68.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC------CCcEEE-ecCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL------PPSHIC-SRVL  138 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~------~fD~Ii-~d~i  138 (158)
                      +..+|||+|||+|..+..+++.  +.+++++|+ +.  +++.+++++...++.  +.+...|.      .||+|+ .+++
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~--~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vl  278 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PP--VAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVL  278 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH--HHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCG
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HH--HHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhh
Confidence            5679999999999999988876  448999999 54  999999999887653  55555543      699999 9999


Q ss_pred             CCCccHH--HHHHHHHHHhcC
Q 031506          139 QDQSSLR--LIIIEVGIILLS  157 (158)
Q Consensus       139 y~~~~~~--~ll~tl~~ll~~  157 (158)
                      ++.+...  .+++.++..|.+
T Consensus       279 h~~~d~~~~~~L~~~~~~L~p  299 (369)
T 3gwz_A          279 HDWDDDDVVRILRRIATAMKP  299 (369)
T ss_dssp             GGSCHHHHHHHHHHHHTTCCT
T ss_pred             ccCCHHHHHHHHHHHHHHcCC
Confidence            8776654  788888877764

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.88  E-value=1e-08  Score=83.13  Aligned_cols=85  Identities=15%  Similarity=0.134  Sum_probs=67.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC------CCcEEE-ecCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL------PPSHIC-SRVL  138 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~------~fD~Ii-~d~i  138 (158)
                      ++.+|||+|||+|..+..+++.+  .+++++|+ +.  +++.+++|+..+++.  +.+...|.      .||+|+ ..++
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl  259 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AG--TVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVL  259 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TT--HHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCG
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HH--HHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccc
Confidence            56799999999999999888765  48889998 65  999999999987763  55555553      499999 9998


Q ss_pred             CCCccH--HHHHHHHHHHhcC
Q 031506          139 QDQSSL--RLIIIEVGIILLS  157 (158)
Q Consensus       139 y~~~~~--~~ll~tl~~ll~~  157 (158)
                      ++.+..  ..+++.+...|.+
T Consensus       260 ~~~~~~~~~~~l~~~~~~L~p  280 (360)
T 1tw3_A          260 LNWPDHDAVRILTRCAEALEP  280 (360)
T ss_dssp             GGSCHHHHHHHHHHHHHTEEE
T ss_pred             cCCCHHHHHHHHHHHHHhcCC
Confidence            776554  4788888777653

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.88  E-value=4e-09  Score=83.44  Aligned_cols=86  Identities=13%  Similarity=0.069  Sum_probs=63.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHHHH--cC---CcceEEEcC---------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEM--NK---LNCRLLMTS---------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~-g-~~v~~tD~~~~~~~l~~~~~n~~~--n~---~~~~~~~~d---------~~fD~I  133 (158)
                      ++++|||+|||+|.++..+++. + .+|+++|+++.  +++.+++|+..  ++   -++++...|         .+||+|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~--~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I  152 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGK--VIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHH--HHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHH--HHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence            5689999999999999988887 4 59999999965  99999998753  12   235555544         279999


Q ss_pred             EecCCCCCcc-----HHHHHHHHHHHhcC
Q 031506          134 CSRVLQDQSS-----LRLIIIEVGIILLS  157 (158)
Q Consensus       134 i~d~iy~~~~-----~~~ll~tl~~ll~~  157 (158)
                      ++|+.+....     ..++++.+...|.+
T Consensus       153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~p  181 (275)
T 1iy9_A          153 MVDSTEPVGPAVNLFTKGFYAGIAKALKE  181 (275)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEE
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHHhcCC
Confidence            9887764221     25677777766643

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.87  E-value=8.8e-09  Score=86.12  Aligned_cols=83  Identities=10%  Similarity=-0.000  Sum_probs=65.0

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC--
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL--  128 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~--  128 (158)
                      .++..++..+.    ..++.+|||+|||+|..++.+++.+  .+|+++|+++.  +++.+++|++.+++.+.+...|.  
T Consensus       233 ~~s~~~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~--~l~~~~~~~~~~g~~~~~~~~D~~~  306 (429)
T 1sqg_A          233 ASAQGCMTWLA----PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQ--RLSRVYDNLKRLGMKATVKQGDGRY  306 (429)
T ss_dssp             HHHHTHHHHHC----CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTT--THHHHHHHHHHTTCCCEEEECCTTC
T ss_pred             HHHHHHHHHcC----CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHH--HHHHHHHHHHHcCCCeEEEeCchhh
Confidence            44555555442    2357799999999999999888765  59999999987  99999999999887766665542  


Q ss_pred             --------CCcEEEecCCCCC
Q 031506          129 --------PPSHICSRVLQDQ  141 (158)
Q Consensus       129 --------~fD~Ii~d~iy~~  141 (158)
                              +||+|++|++|..
T Consensus       307 ~~~~~~~~~fD~Vl~D~Pcsg  327 (429)
T 1sqg_A          307 PSQWCGEQQFDRILLDAPCSA  327 (429)
T ss_dssp             THHHHTTCCEEEEEEECCCCC
T ss_pred             chhhcccCCCCEEEEeCCCCc
Confidence                    6999998887653

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.86  E-value=1.1e-08  Score=79.97  Aligned_cols=83  Identities=22%  Similarity=0.230  Sum_probs=60.3

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHc-C---CcceEEEcC--------CCCcE
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMN-K---LNCRLLMTS--------LPPSH  132 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n-~---~~~~~~~~d--------~~fD~  132 (158)
                      ..++.+|||+|||+|.+++.+++.   +.+|+++|+++.  +++.+++|+..+ +   -++.+...|        .+||+
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~  174 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRAD--HAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDR  174 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHH--HHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEE
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeE
Confidence            446789999999999999988875   569999999965  999999999876 4   234444332        26999


Q ss_pred             EEecCCCCCccHHHHHHHHHHHhc
Q 031506          133 ICSRVLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       133 Ii~d~iy~~~~~~~ll~tl~~ll~  156 (158)
                      |++++..    ...+++.+..+|.
T Consensus       175 v~~~~~~----~~~~l~~~~~~L~  194 (280)
T 1i9g_A          175 AVLDMLA----PWEVLDAVSRLLV  194 (280)
T ss_dssp             EEEESSC----GGGGHHHHHHHEE
T ss_pred             EEECCcC----HHHHHHHHHHhCC
Confidence            9965542    2345555555443

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.86  E-value=6.5e-09  Score=84.66  Aligned_cols=86  Identities=9%  Similarity=0.024  Sum_probs=63.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHc--C---CcceEEEcC----------CCCcE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN--K---LNCRLLMTS----------LPPSH  132 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n--~---~~~~~~~~d----------~~fD~  132 (158)
                      ++++|||+|||+|.+++.+++.  ..+|+++|+++.  +++.+++|+...  +   .++++...|          .+||+
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~--~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKM--VVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHH--HHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            5679999999999999988887  359999999965  999999998652  2   235555443          37999


Q ss_pred             EEecCCC--C-Ccc--HHHHHHHHHHHhcC
Q 031506          133 ICSRVLQ--D-QSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       133 Ii~d~iy--~-~~~--~~~ll~tl~~ll~~  157 (158)
                      |++|+..  . ...  ...+++.+..+|.+
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~Lkp  227 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRP  227 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEE
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCC
Confidence            9966542  1 121  46788888777654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.85  E-value=4.5e-09  Score=79.46  Aligned_cols=75  Identities=16%  Similarity=0.035  Sum_probs=61.3

Q ss_pred             CCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecCCCCC
Q 031506           71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRVLQDQ  141 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~iy~~  141 (158)
                      +.+|||+|||+|..+..+++.    +++|+++.  +++.++++      .+.+...|        .+||+|+ .+++++.
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~--~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSER--MAEIARKR------GVFVLKGTAENLPLKDESFDFALMVTTICFV  115 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHH--HHHHHHHT------TCEEEECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHH--HHHHHHhc------CCEEEEcccccCCCCCCCeeEEEEcchHhhc
Confidence            789999999999999988776    99999965  99988876      23333332        2799999 9999999


Q ss_pred             ccHHHHHHHHHHHhcC
Q 031506          142 SSLRLIIIEVGIILLS  157 (158)
Q Consensus       142 ~~~~~ll~tl~~ll~~  157 (158)
                      +....+++.+..+|.+
T Consensus       116 ~~~~~~l~~~~~~L~p  131 (219)
T 1vlm_A          116 DDPERALKEAYRILKK  131 (219)
T ss_dssp             SCHHHHHHHHHHHEEE
T ss_pred             cCHHHHHHHHHHHcCC
Confidence            9999999999888764

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.84  E-value=5.8e-09  Score=82.26  Aligned_cols=70  Identities=20%  Similarity=0.241  Sum_probs=53.5

Q ss_pred             CeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH-------HcC-C--cceEEEcC---------CCCcE
Q 031506           72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE-------MNK-L--NCRLLMTS---------LPPSH  132 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~-------~n~-~--~~~~~~~d---------~~fD~  132 (158)
                      .+|||+|||+|..++.++++|++|+++|.++.  +...+++|++       .|+ +  ++++...|         .+||+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~--~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv  167 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPV--VAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHH--HHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence            79999999999999999999999999999964  6666666654       233 2  24444332         16999


Q ss_pred             EEecCCCCCcc
Q 031506          133 ICSRVLQDQSS  143 (158)
Q Consensus       133 Ii~d~iy~~~~  143 (158)
                      |+.||.|....
T Consensus       168 V~lDP~y~~~~  178 (258)
T 2oyr_A          168 VYLDPMFPHKQ  178 (258)
T ss_dssp             EEECCCCCCCC
T ss_pred             EEEcCCCCCcc
Confidence            99999998653

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.84  E-value=1.3e-08  Score=81.63  Aligned_cols=83  Identities=12%  Similarity=0.077  Sum_probs=65.5

Q ss_pred             CeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC------CCcEEE-ecCCCC
Q 031506           72 ANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL------PPSHIC-SRVLQD  140 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~------~fD~Ii-~d~iy~  140 (158)
                      .+|||+|||+|..+..+++.  +.+++++|+ +.  +++.+++++..+++  ++.+...|.      +||+|+ ..++++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~  245 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EG--SLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGD  245 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TT--CTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGG
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HH--HHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccC
Confidence            89999999999999988876  459999999 75  89999998876543  355555543      599999 999975


Q ss_pred             Ccc--HHHHHHHHHHHhcC
Q 031506          141 QSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       141 ~~~--~~~ll~tl~~ll~~  157 (158)
                      .+.  ...+++.+...|.+
T Consensus       246 ~~~~~~~~~l~~~~~~L~p  264 (334)
T 2ip2_A          246 LDEAASLRLLGNCREAMAG  264 (334)
T ss_dssp             CCHHHHHHHHHHHHHHSCT
T ss_pred             CCHHHHHHHHHHHHHhcCC
Confidence            544  34888888887765

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.84  E-value=1.7e-08  Score=85.92  Aligned_cols=84  Identities=8%  Similarity=-0.019  Sum_probs=62.1

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-  127 (158)
                      +++..++..+...  ..++.+|||+|||+|..++.++++   +..|+++|+++.  +++.+++|++.+++. +.+...| 
T Consensus       102 ~~s~l~~~~L~~~--~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~--~l~~~~~n~~r~g~~nv~~~~~D~  177 (479)
T 2frx_A          102 ASSMLPVAALFAD--GNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSAS--RVKVLHANISRCGISNVALTHFDG  177 (479)
T ss_dssp             HHHHHHHHHHTTT--TCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHH--HHHHHHHHHHHHTCCSEEEECCCS
T ss_pred             HHHHHHHHHhCcc--cCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCcEEEEeCCH
Confidence            3444444544321  125779999999999999987775   259999999975  999999999988864 4554443 


Q ss_pred             --------CCCcEEEecCCCC
Q 031506          128 --------LPPSHICSRVLQD  140 (158)
Q Consensus       128 --------~~fD~Ii~d~iy~  140 (158)
                              ..||.|++|++|.
T Consensus       178 ~~~~~~~~~~fD~Il~D~PcS  198 (479)
T 2frx_A          178 RVFGAAVPEMFDAILLDAPCS  198 (479)
T ss_dssp             TTHHHHSTTCEEEEEEECCCC
T ss_pred             HHhhhhccccCCEEEECCCcC
Confidence                    2699999888774

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.83  E-value=5.2e-09  Score=84.06  Aligned_cols=86  Identities=10%  Similarity=-0.048  Sum_probs=61.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHH--cC---CcceEEEcC---------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM--NK---LNCRLLMTS---------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~--n~---~~~~~~~~d---------~~fD~I  133 (158)
                      ++++|||||||+|..++.+++..  .+|+++|+++.  +++.+++|+..  ++   -++++...|         .+||+|
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~--~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDED--VIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHH--HHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence            56899999999999999988874  59999999965  99999999765  22   235555443         379999


Q ss_pred             EecCCCCCc-----cHHHHHHHHHHHhcC
Q 031506          134 CSRVLQDQS-----SLRLIIIEVGIILLS  157 (158)
Q Consensus       134 i~d~iy~~~-----~~~~ll~tl~~ll~~  157 (158)
                      ++|+.....     ...++++.+..+|.+
T Consensus       173 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp  201 (304)
T 2o07_A          173 ITDSSDPMGPAESLFKESYYQLMKTALKE  201 (304)
T ss_dssp             EEECC-----------CHHHHHHHHHEEE
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHhccCC
Confidence            977664321     124567777666643

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.83  E-value=2.6e-08  Score=80.03  Aligned_cols=86  Identities=17%  Similarity=0.084  Sum_probs=69.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC------CCcEEE-ecCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL------PPSHIC-SRVL  138 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~------~fD~Ii-~d~i  138 (158)
                      +..+|||+|||+|..+..+++.  +.+++++|+ +.  +++.+++++...++.  +.+...|.      +||+|+ .+++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vl  245 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QG--PASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVL  245 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH--HHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCG
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HH--HHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhh
Confidence            3579999999999999988775  348999999 54  999999999887654  55555543      699999 9999


Q ss_pred             CCCcc--HHHHHHHHHHHhcCC
Q 031506          139 QDQSS--LRLIIIEVGIILLSS  158 (158)
Q Consensus       139 y~~~~--~~~ll~tl~~ll~~~  158 (158)
                      ++.++  ...+++.++..|.++
T Consensus       246 h~~~~~~~~~~l~~~~~~L~pg  267 (332)
T 3i53_A          246 HDWDDLSAVAILRRCAEAAGSG  267 (332)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTT
T ss_pred             ccCCHHHHHHHHHHHHHhcCCC
Confidence            87766  588999998888753

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.83  E-value=7.8e-09  Score=78.28  Aligned_cols=68  Identities=16%  Similarity=0.289  Sum_probs=53.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCC------cceEEEcC--------CCCc
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL------NCRLLMTS--------LPPS  131 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~------~~~~~~~d--------~~fD  131 (158)
                      .++.+|||+|||+|..+..+++. +  .+|+++|+++.  +++.+++|+..++.      ++.+...|        .+||
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  153 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKE--LVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD  153 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHH--HHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHH--HHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcC
Confidence            46789999999999999988876 4  59999999965  99999999987653      34554443        2799


Q ss_pred             EEE-ecCC
Q 031506          132 HIC-SRVL  138 (158)
Q Consensus       132 ~Ii-~d~i  138 (158)
                      +|+ ..++
T Consensus       154 ~i~~~~~~  161 (226)
T 1i1n_A          154 AIHVGAAA  161 (226)
T ss_dssp             EEEECSBB
T ss_pred             EEEECCch
Confidence            999 4444

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.82  E-value=7.2e-09  Score=82.78  Aligned_cols=86  Identities=10%  Similarity=0.006  Sum_probs=61.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHHHH--cC---CcceEEEcC---------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEM--NK---LNCRLLMTS---------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~-g-~~v~~tD~~~~~~~l~~~~~n~~~--n~---~~~~~~~~d---------~~fD~I  133 (158)
                      ++.+|||+|||+|..+..+++. + .+|+++|+++.  +++.+++|+..  ++   .++++...|         .+||+|
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~--~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  167 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGL--VIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  167 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHH--HHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHH--HHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEE
Confidence            4579999999999999988887 3 59999999965  99999999754  22   235555443         269999


Q ss_pred             EecCCCC-Cc-----cHHHHHHHHHHHhcC
Q 031506          134 CSRVLQD-QS-----SLRLIIIEVGIILLS  157 (158)
Q Consensus       134 i~d~iy~-~~-----~~~~ll~tl~~ll~~  157 (158)
                      ++|+... ..     ...++++.+..+|.+
T Consensus       168 i~d~~~~~~~~~~~l~~~~~l~~~~~~Lkp  197 (296)
T 1inl_A          168 IIDSTDPTAGQGGHLFTEEFYQACYDALKE  197 (296)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEE
T ss_pred             EEcCCCcccCchhhhhHHHHHHHHHHhcCC
Confidence            9776543 11     226777777776653

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.82  E-value=6.8e-09  Score=84.20  Aligned_cols=68  Identities=10%  Similarity=0.056  Sum_probs=56.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC-------CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEEe
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHICS  135 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g-------~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii~  135 (158)
                      ++.+|||+|||||.+.+.+++..       .+++++|+++.  +++.++.|+..+++.+.+...|.       +||+|++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~--~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~  207 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDL--LISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS  207 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHH--HHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHH--HHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEE
Confidence            45799999999999999877653       68999999965  99999999998887766665542       7999997


Q ss_pred             cCCC
Q 031506          136 RVLQ  139 (158)
Q Consensus       136 d~iy  139 (158)
                      +|+|
T Consensus       208 NPPf  211 (344)
T 2f8l_A          208 DLPV  211 (344)
T ss_dssp             ECCC
T ss_pred             CCCC
Confidence            7774

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.82  E-value=3.7e-08  Score=77.76  Aligned_cols=86  Identities=20%  Similarity=0.208  Sum_probs=66.2

Q ss_pred             CCCeEEEeccCC---CHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC----------------
Q 031506           70 SGANVVELGAGT---SLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL----------------  128 (158)
Q Consensus        70 ~~~~vLELG~Gt---Gl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~----------------  128 (158)
                      ...+|||||||+   |.+...+++.  +.+|+++|+++.  |++.+++++..+ -.+.+...|.                
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~--~l~~Ar~~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~~  153 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPM--VLTHGRALLAKD-PNTAVFTADVRDPEYILNHPDVRRMI  153 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHH--HHHHHHHHHTTC-TTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChH--HHHHHHHhcCCC-CCeEEEEeeCCCchhhhccchhhccC
Confidence            347999999999   9887766654  569999999964  999999988543 2344444332                


Q ss_pred             ---CCcEEE-ecCCCCCcc--HHHHHHHHHHHhcCC
Q 031506          129 ---PPSHIC-SRVLQDQSS--LRLIIIEVGIILLSS  158 (158)
Q Consensus       129 ---~fD~Ii-~d~iy~~~~--~~~ll~tl~~ll~~~  158 (158)
                         +||+|+ +.++++.+.  ...+++.+...|.++
T Consensus       154 d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pG  189 (274)
T 2qe6_A          154 DFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPG  189 (274)
T ss_dssp             CTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTT
T ss_pred             CCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCC
Confidence               589999 889988766  889999999988753

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.82  E-value=8.4e-09  Score=83.04  Aligned_cols=86  Identities=10%  Similarity=0.013  Sum_probs=64.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHH-c-----CCcceEEEcC---------CCCcE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEM-N-----KLNCRLLMTS---------LPPSH  132 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~-n-----~~~~~~~~~d---------~~fD~  132 (158)
                      ++++|||+|||+|..+..+++.  +.+|+++|+++.  +++.+++|+.. +     ..++++...|         .+||+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~--~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGE--LVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHH--HHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHH--HHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence            5679999999999999988887  459999999965  99999998764 2     2245555443         37999


Q ss_pred             EEecCCCCC---cc-----HHHHHHHHHHHhcC
Q 031506          133 ICSRVLQDQ---SS-----LRLIIIEVGIILLS  157 (158)
Q Consensus       133 Ii~d~iy~~---~~-----~~~ll~tl~~ll~~  157 (158)
                      |++|+..+.   ..     ..++++.+..+|.+
T Consensus       155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp  187 (314)
T 1uir_A          155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP  187 (314)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE
T ss_pred             EEECCCCcccccCcchhccHHHHHHHHHHhcCC
Confidence            997766543   11     36778888777654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.82  E-value=1.1e-08  Score=82.41  Aligned_cols=73  Identities=16%  Similarity=0.202  Sum_probs=54.0

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHH-------cCC-----cceEEEcC----
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEM-------NKL-----NCRLLMTS----  127 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~-------n~~-----~~~~~~~d----  127 (158)
                      ...++.+|||+|||+|.+++.+++. |  .+|+++|+++.  +++.+++|+..       |++     ++.+...|    
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~  179 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKD--HHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA  179 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHH--HHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHH--HHHHHHHHHHHhhcccccccccccCCceEEEECChHHc
Confidence            3457789999999999999988886 5  69999999965  99999999884       322     24444332    


Q ss_pred             ------CCCcEEEecCCCCC
Q 031506          128 ------LPPSHICSRVLQDQ  141 (158)
Q Consensus       128 ------~~fD~Ii~d~iy~~  141 (158)
                            .+||+|++|+....
T Consensus       180 ~~~~~~~~fD~V~~~~~~~~  199 (336)
T 2b25_A          180 TEDIKSLTFDAVALDMLNPH  199 (336)
T ss_dssp             C-------EEEEEECSSSTT
T ss_pred             ccccCCCCeeEEEECCCCHH
Confidence                  26999997665433

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.82  E-value=8.8e-09  Score=81.62  Aligned_cols=86  Identities=10%  Similarity=0.018  Sum_probs=62.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHH-----------cCCcceEEEcC--------CC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEM-----------NKLNCRLLMTS--------LP  129 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~-----------n~~~~~~~~~d--------~~  129 (158)
                      ++++|||+|||+|.++..+++.+. +|+++|+++.  +++.+++|+..           +..++++...|        .+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~--~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDED--VIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHH--HHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            567999999999999998888754 9999999965  99999999821           12234555443        37


Q ss_pred             CcEEEecCCCCCc---c--HHHHHHHHHHHhcC
Q 031506          130 PSHICSRVLQDQS---S--LRLIIIEVGIILLS  157 (158)
Q Consensus       130 fD~Ii~d~iy~~~---~--~~~ll~tl~~ll~~  157 (158)
                      ||+|++|+.+...   .  ..++++.+..+|.+
T Consensus       153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p  185 (281)
T 1mjf_A          153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN  185 (281)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC
Confidence            9999977765321   1  26677777777653

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.81  E-value=1.9e-08  Score=77.67  Aligned_cols=86  Identities=10%  Similarity=0.012  Sum_probs=60.7

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHc--------CC-cceEEEcCC----------
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN--------KL-NCRLLMTSL----------  128 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n--------~~-~~~~~~~d~----------  128 (158)
                      ++.+|||+|||+|.+++.+++.+  .+|+++|+++.  +++.+++|++.+        ++ ++.+...|.          
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQ--VTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHH--HHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHH--HHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence            56789999999999999988876  38999999965  999999998876        44 345544432          


Q ss_pred             -CCcEEE-e--cCCCCCc------cHHHHHHHHHHHhcC
Q 031506          129 -PPSHIC-S--RVLQDQS------SLRLIIIEVGIILLS  157 (158)
Q Consensus       129 -~fD~Ii-~--d~iy~~~------~~~~ll~tl~~ll~~  157 (158)
                       .+|.|+ .  |+.+...      ..+.+++.+..+|.+
T Consensus       127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp  165 (246)
T 2vdv_E          127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKE  165 (246)
T ss_dssp             TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEE
T ss_pred             cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCC
Confidence             567776 3  3322111      125788888877754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.81  E-value=2.4e-08  Score=88.50  Aligned_cols=100  Identities=16%  Similarity=0.161  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC------------------------------------------
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG------------------------------------------   92 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g------------------------------------------   92 (158)
                      ...||..+........+.++||.+||||.+.+.++..+                                          
T Consensus       175 ~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~  254 (703)
T 3v97_A          175 KETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE  254 (703)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence            35677766664444467799999999999999877643                                          


Q ss_pred             --CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC----------CCcEEEecCCCCCc-----cHHHHHHHHHH
Q 031506           93 --SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL----------PPSHICSRVLQDQS-----SLRLIIIEVGI  153 (158)
Q Consensus        93 --~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~----------~fD~Ii~d~iy~~~-----~~~~ll~tl~~  153 (158)
                        .+|+++|+++.  |++.+++|+..+++.  +.+...|.          +||+|++||+|...     .+..+.+.+..
T Consensus       255 ~~~~i~G~Did~~--av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~  332 (703)
T 3v97_A          255 YSSHFYGSDSDAR--VIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGR  332 (703)
T ss_dssp             CCCCEEEEESCHH--HHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred             CCccEEEEECCHH--HHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence              47999999965  999999999999986  45544431          68999999999753     45666666655


Q ss_pred             Hhc
Q 031506          154 ILL  156 (158)
Q Consensus       154 ll~  156 (158)
                      .+.
T Consensus       333 ~lk  335 (703)
T 3v97_A          333 IMK  335 (703)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.81  E-value=3.8e-09  Score=83.74  Aligned_cols=71  Identities=11%  Similarity=0.053  Sum_probs=59.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE-ecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC-SRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii-~d~iy  139 (158)
                      ...+|||||||+|.+++.++..  .++++++|+++.  |++.+++|+..|++..++...|.       +||+|+ ...+.
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~--~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~  209 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDAR--LVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLP  209 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHH--HHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHH
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHH--HHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHH
Confidence            3679999999999999987766  349999999976  99999999999999888777754       899999 77665


Q ss_pred             CCc
Q 031506          140 DQS  142 (158)
Q Consensus       140 ~~~  142 (158)
                      +.+
T Consensus       210 ~Le  212 (281)
T 3lcv_B          210 CLE  212 (281)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.80  E-value=4e-08  Score=76.27  Aligned_cols=105  Identities=16%  Similarity=0.125  Sum_probs=64.3

Q ss_pred             ceEecchH-HHHHHHHHhccc---CCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCc
Q 031506           48 GLFVWPCS-VILAEYVWQQRY---RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN  120 (158)
Q Consensus        48 g~~vW~~~-~~la~~l~~~~~---~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~  120 (158)
                      .++.|..- -.++..+.....   ..++.+|||+|||+|..+..++.. +  .+|+++|+++.  |++.+.+.++.. .+
T Consensus        50 ~yr~w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~--~l~~l~~~a~~r-~n  126 (232)
T 3id6_C           50 EYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPR--VVRELLLVAQRR-PN  126 (232)
T ss_dssp             EEEECCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHH--HHHHHHHHHHHC-TT
T ss_pred             chhhhchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHH--HHHHHHHHhhhc-CC
Confidence            35666432 245566655332   447889999999999999988765 3  39999999975  776554444332 12


Q ss_pred             ceEEEcC-----------CCCcEEEecCCCCCccHHHHHHHHHHHhc
Q 031506          121 CRLLMTS-----------LPPSHICSRVLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       121 ~~~~~~d-----------~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~  156 (158)
                      +.+...|           .+||+|++|... +.....+......+|+
T Consensus       127 v~~i~~Da~~~~~~~~~~~~~D~I~~d~a~-~~~~~il~~~~~~~Lk  172 (232)
T 3id6_C          127 IFPLLADARFPQSYKSVVENVDVLYVDIAQ-PDQTDIAIYNAKFFLK  172 (232)
T ss_dssp             EEEEECCTTCGGGTTTTCCCEEEEEECCCC-TTHHHHHHHHHHHHEE
T ss_pred             eEEEEcccccchhhhccccceEEEEecCCC-hhHHHHHHHHHHHhCC
Confidence            3333322           279999977654 3333334444443554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.79  E-value=1.1e-08  Score=82.82  Aligned_cols=86  Identities=12%  Similarity=0.035  Sum_probs=62.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHH--cC---CcceEEEcC---------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEM--NK---LNCRLLMTS---------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~--n~---~~~~~~~~d---------~~fD~I  133 (158)
                      ++++|||+|||+|.+++.+++.  +.+|+++|+++.  +++.+++|+..  ++   .++++...|         .+||+|
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~--~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI  193 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDET--VIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI  193 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHH--HHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence            4679999999999999988887  459999999965  99999999875  22   235555443         379999


Q ss_pred             EecCCCC---CccH--HHHHHHHHHHhcC
Q 031506          134 CSRVLQD---QSSL--RLIIIEVGIILLS  157 (158)
Q Consensus       134 i~d~iy~---~~~~--~~ll~tl~~ll~~  157 (158)
                      ++|+...   ....  .++++.+...|.+
T Consensus       194 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp  222 (321)
T 2pt6_A          194 IVDSSDPIGPAETLFNQNFYEKIYNALKP  222 (321)
T ss_dssp             EEECCCSSSGGGGGSSHHHHHHHHHHEEE
T ss_pred             EECCcCCCCcchhhhHHHHHHHHHHhcCC
Confidence            9665321   1111  6778887777653

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.78  E-value=5e-08  Score=73.83  Aligned_cols=69  Identities=12%  Similarity=0.091  Sum_probs=53.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCC-------EEEEEecCChHHHHHHHHHHHHHcCC------cceEEEcC--------
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGS-------NVTLTDDSNRIEVLKNMRRVCEMNKL------NCRLLMTS--------  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~-------~v~~tD~~~~~~~l~~~~~n~~~n~~------~~~~~~~d--------  127 (158)
                      .++.+|||+|||+|..+..+++...       +|+++|+++.  +++.+++|++.+++      ++.+...|        
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  156 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKD--LVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE  156 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHH--HHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHH--HHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence            4678999999999999998888653       9999999965  99999999988762      34444332        


Q ss_pred             ----CCCcEEE-ecCCC
Q 031506          128 ----LPPSHIC-SRVLQ  139 (158)
Q Consensus       128 ----~~fD~Ii-~d~iy  139 (158)
                          .+||+|+ ..++.
T Consensus       157 ~~~~~~fD~I~~~~~~~  173 (227)
T 2pbf_A          157 KKELGLFDAIHVGASAS  173 (227)
T ss_dssp             HHHHCCEEEEEECSBBS
T ss_pred             CccCCCcCEEEECCchH
Confidence                2699999 44443

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.78  E-value=1.2e-08  Score=82.10  Aligned_cols=70  Identities=11%  Similarity=-0.011  Sum_probs=55.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------------CCCcEE
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------------LPPSHI  133 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------------~~fD~I  133 (158)
                      .++.+|||+|||+|..++.+++.  +.+|+++|.++.  |++.+++|++.++.++.+...|             .+||.|
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~--al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~V  102 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSE--VLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI  102 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHH--HHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence            36779999999999999988876  469999999965  9999999998876445554432             269999


Q ss_pred             EecCCCC
Q 031506          134 CSRVLQD  140 (158)
Q Consensus       134 i~d~iy~  140 (158)
                      ++|+.+.
T Consensus       103 l~D~gvS  109 (301)
T 1m6y_A          103 LMDLGVS  109 (301)
T ss_dssp             EEECSCC
T ss_pred             EEcCccc
Confidence            9887653

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.77  E-value=1e-08  Score=82.88  Aligned_cols=86  Identities=13%  Similarity=-0.009  Sum_probs=59.5

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHc-----CCcceEEEcC---------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRLLMTS---------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~~d---------~~fD~I  133 (158)
                      ++++|||+|||+|..++.+++.  ..+|+++|+++.  +++.+++|+...     .-++++...|         .+||+|
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~--~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  185 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEM--VIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  185 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHH--HHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence            4579999999999999988876  359999999965  999999998643     2234554443         379999


Q ss_pred             EecCCCCCc---c-H-HHHHHHHHHHhcC
Q 031506          134 CSRVLQDQS---S-L-RLIIIEVGIILLS  157 (158)
Q Consensus       134 i~d~iy~~~---~-~-~~ll~tl~~ll~~  157 (158)
                      ++|+.....   . + ..+++.+..+|.+
T Consensus       186 i~d~~~~~~~~~~l~t~~~l~~~~~~Lkp  214 (314)
T 2b2c_A          186 ITDSSDPVGPAESLFGQSYYELLRDALKE  214 (314)
T ss_dssp             EECCC-------------HHHHHHHHEEE
T ss_pred             EEcCCCCCCcchhhhHHHHHHHHHhhcCC
Confidence            977653211   1 1 5677777776653

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.76  E-value=2.9e-08  Score=83.51  Aligned_cols=83  Identities=12%  Similarity=0.076  Sum_probs=61.5

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--C-CEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcC-
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTS-  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g-~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d-  127 (158)
                      .++..++..+.    ..++.+|||+|||+|..++.+++.  + .+|+++|+++.  +++.+++|++.+++ ++.+...| 
T Consensus       246 ~~s~l~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~--~l~~~~~~~~~~g~~~v~~~~~D~  319 (450)
T 2yxl_A          246 EASAVASIVLD----PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKM--RMKRLKDFVKRMGIKIVKPLVKDA  319 (450)
T ss_dssp             HHHHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHH--HHHHHHHHHHHTTCCSEEEECSCT
T ss_pred             chhHHHHHhcC----CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHH--HHHHHHHHHHHcCCCcEEEEEcCh
Confidence            34444454442    235679999999999999987774  3 59999999965  99999999998887 34544332 


Q ss_pred             ---------CCCcEEEecCCCCC
Q 031506          128 ---------LPPSHICSRVLQDQ  141 (158)
Q Consensus       128 ---------~~fD~Ii~d~iy~~  141 (158)
                               .+||+|++|+++..
T Consensus       320 ~~~~~~~~~~~fD~Vl~D~Pcsg  342 (450)
T 2yxl_A          320 RKAPEIIGEEVADKVLLDAPCTS  342 (450)
T ss_dssp             TCCSSSSCSSCEEEEEEECCCCC
T ss_pred             hhcchhhccCCCCEEEEcCCCCC
Confidence                     25999998877643

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.76  E-value=1.9e-08  Score=80.52  Aligned_cols=86  Identities=10%  Similarity=0.029  Sum_probs=60.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHH-----cCCcceEEEcC----------CCCcE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRLLMTS----------LPPSH  132 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~~d----------~~fD~  132 (158)
                      ++++|||+|||+|.++..+++.  ..+|+++|+++.  +++.+++++..     ...++++...|          .+||+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~--~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv  172 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGE--VMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV  172 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHH--HHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence            5679999999999999988876  359999999965  99999998742     12234444432          37999


Q ss_pred             EEecCCCCCccH-----HHHHHHHHHHhcC
Q 031506          133 ICSRVLQDQSSL-----RLIIIEVGIILLS  157 (158)
Q Consensus       133 Ii~d~iy~~~~~-----~~ll~tl~~ll~~  157 (158)
                      |++|+.+.....     .++++.+..+|.+
T Consensus       173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lkp  202 (304)
T 3bwc_A          173 VIIDTTDPAGPASKLFGEAFYKDVLRILKP  202 (304)
T ss_dssp             EEEECC---------CCHHHHHHHHHHEEE
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCC
Confidence            997665433211     5677777777653

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.76  E-value=4.8e-08  Score=79.72  Aligned_cols=85  Identities=15%  Similarity=0.070  Sum_probs=65.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-------C--CCcEEE-e
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-------L--PPSHIC-S  135 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-------~--~fD~Ii-~  135 (158)
                      ...+|||+|||+|..++.+++.  +.+++++|+ +  ++++.+++++...++.  +.+...|       .  .||+|+ .
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~  255 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-P--QQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS  255 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-H--HHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-H--HHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence            5679999999999999988874  458999998 4  4999999998877653  4444331       2  699999 9


Q ss_pred             cCCCCCcc--HHHHHHHHHHHhcC
Q 031506          136 RVLQDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~--~~~ll~tl~~ll~~  157 (158)
                      .++++...  ...+++.+...|.+
T Consensus       256 ~vlh~~~~~~~~~~l~~~~~~L~p  279 (363)
T 3dp7_A          256 QFLDCFSEEEVISILTRVAQSIGK  279 (363)
T ss_dssp             SCSTTSCHHHHHHHHHHHHHHCCT
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCC
Confidence            99986543  45788888887765

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.75  E-value=5e-08  Score=78.75  Aligned_cols=84  Identities=12%  Similarity=0.102  Sum_probs=66.5

Q ss_pred             CCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC---------CCcEEE-ec
Q 031506           71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL---------PPSHIC-SR  136 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~---------~fD~Ii-~d  136 (158)
                      +.+|||+|||+|..+..+++.  +.+++++|+ +.  +++.+++++...++.  +.+...|.         +||+|+ ..
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~  256 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PT--TRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND  256 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GG--GHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HH--HHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEec
Confidence            789999999999999988876  459999999 54  899999999887764  44444432         599999 99


Q ss_pred             CCCCCcc--HHHHHHHHHHHhcC
Q 031506          137 VLQDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~~~--~~~ll~tl~~ll~~  157 (158)
                      ++++.+.  ...+++.+...|.+
T Consensus       257 vlh~~~~~~~~~~l~~~~~~L~p  279 (352)
T 3mcz_A          257 CLHYFDAREAREVIGHAAGLVKP  279 (352)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTEEE
T ss_pred             ccccCCHHHHHHHHHHHHHHcCC
Confidence            9987654  47888888877654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.75  E-value=1.7e-08  Score=80.02  Aligned_cols=86  Identities=12%  Similarity=0.040  Sum_probs=63.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHc-----CCcceEEEcC---------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRLLMTS---------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~~d---------~~fD~I  133 (158)
                      ++++|||+|||+|..+..+++..  .+|+++|+++.  +++.+++++..+     ..++++...|         .+||+|
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~--~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDET--VIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI  155 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHH--HHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence            56799999999999999888874  59999999965  999999987643     2234555443         379999


Q ss_pred             EecCCCCC---ccH--HHHHHHHHHHhcC
Q 031506          134 CSRVLQDQ---SSL--RLIIIEVGIILLS  157 (158)
Q Consensus       134 i~d~iy~~---~~~--~~ll~tl~~ll~~  157 (158)
                      ++|+....   ..+  .++++.+..+|.+
T Consensus       156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~p  184 (283)
T 2i7c_A          156 IVDSSDPIGPAETLFNQNFYEKIYNALKP  184 (283)
T ss_dssp             EEECCCTTTGGGGGSSHHHHHHHHHHEEE
T ss_pred             EEcCCCCCCcchhhhHHHHHHHHHHhcCC
Confidence            96654322   122  6778888777653

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.75  E-value=3.5e-08  Score=76.27  Aligned_cols=86  Identities=8%  Similarity=0.025  Sum_probs=59.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHH------cCC-cceEEEcC-----------CC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEM------NKL-NCRLLMTS-----------LP  129 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~------n~~-~~~~~~~d-----------~~  129 (158)
                      ++.+|||+|||+|..++.+|+.  +.+|+++|+++.  |++.+++|++.      ++. ++++...|           ..
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~--~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVK--VSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHH--HHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHH--HHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence            4568999999999999988876  459999999975  99999988764      232 34554443           26


Q ss_pred             CcEEE-e--cCCCCCc------cHHHHHHHHHHHhcC
Q 031506          130 PSHIC-S--RVLQDQS------SLRLIIIEVGIILLS  157 (158)
Q Consensus       130 fD~Ii-~--d~iy~~~------~~~~ll~tl~~ll~~  157 (158)
                      ||.|+ .  |+-+...      ..+.+++.+..+|.+
T Consensus       124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp  160 (235)
T 3ckk_A          124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV  160 (235)
T ss_dssp             EEEEEEESCC-----------CCCHHHHHHHHHHEEE
T ss_pred             eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC
Confidence            88887 3  3221111      125788888888764

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.74  E-value=5.7e-08  Score=82.24  Aligned_cols=82  Identities=12%  Similarity=-0.010  Sum_probs=62.8

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-  127 (158)
                      +++..++..+.    ..++.+|||+|||+|..++.++++   ...|+++|+++.  +++.+++|++.+++. +.+...| 
T Consensus        92 ~ss~l~~~~L~----~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~--rl~~~~~n~~r~g~~nv~v~~~Da  165 (456)
T 3m4x_A           92 PSAMIVGTAAA----AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPK--RAKILSENIERWGVSNAIVTNHAP  165 (456)
T ss_dssp             TTTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHH--HHHHHHHHHHHHTCSSEEEECCCH
T ss_pred             HHHHHHHHHcC----CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCceEEEeCCH
Confidence            45666666553    235789999999999999977764   249999999965  999999999998875 4444333 


Q ss_pred             --------CCCcEEEecCCCC
Q 031506          128 --------LPPSHICSRVLQD  140 (158)
Q Consensus       128 --------~~fD~Ii~d~iy~  140 (158)
                              ..||+|++|++|.
T Consensus       166 ~~l~~~~~~~FD~Il~DaPCS  186 (456)
T 3m4x_A          166 AELVPHFSGFFDRIVVDAPCS  186 (456)
T ss_dssp             HHHHHHHTTCEEEEEEECCCC
T ss_pred             HHhhhhccccCCEEEECCCCC
Confidence                    3799999888753

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.73  E-value=1.4e-08  Score=79.37  Aligned_cols=81  Identities=14%  Similarity=0.163  Sum_probs=58.4

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC---CC---
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL---PP---  130 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~---~f---  130 (158)
                      +.+.+.+.....++.+|||+|||+|.++..+++.+ .+|+++|+++.  |++.+++|   ...++++...|.   .|   
T Consensus        19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~--~~~~~~~~---~~~~v~~i~~D~~~~~~~~~   93 (249)
T 3ftd_A           19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE--MVENLKSI---GDERLEVINEDASKFPFCSL   93 (249)
T ss_dssp             HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHH--HHHHHTTS---CCTTEEEECSCTTTCCGGGS
T ss_pred             HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHH--HHHHHHhc---cCCCeEEEEcchhhCChhHc
Confidence            34445444444467899999999999999999986 79999999975  99999887   233455555443   11   


Q ss_pred             --cEEE-ecCCCCCcc
Q 031506          131 --SHIC-SRVLQDQSS  143 (158)
Q Consensus       131 --D~Ii-~d~iy~~~~  143 (158)
                        ++++ ++++|+...
T Consensus        94 ~~~~~vv~NlPy~i~~  109 (249)
T 3ftd_A           94 GKELKVVGNLPYNVAS  109 (249)
T ss_dssp             CSSEEEEEECCTTTHH
T ss_pred             cCCcEEEEECchhccH
Confidence              3455 999998643

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.73  E-value=2.9e-08  Score=83.37  Aligned_cols=83  Identities=12%  Similarity=-0.014  Sum_probs=63.2

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---------------CCEEEEEecCChHHHHHHHHHHHHHcCC--
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---------------GSNVTLTDDSNRIEVLKNMRRVCEMNKL--  119 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---------------g~~v~~tD~~~~~~~l~~~~~n~~~n~~--  119 (158)
                      .+++++.+......+.+|||.|||||.+.+.+++.               +.+++++|+++.  ++..++.|+..+++  
T Consensus       158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~--~~~lA~~nl~l~g~~~  235 (445)
T 2okc_A          158 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPL--VVTLASMNLYLHGIGT  235 (445)
T ss_dssp             HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHH--HHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHH--HHHHHHHHHHHhCCCc
Confidence            34555554333345679999999999999877753               358999999965  99999999998887  


Q ss_pred             -cceEEEcCC-------CCcEEEecCCCCC
Q 031506          120 -NCRLLMTSL-------PPSHICSRVLQDQ  141 (158)
Q Consensus       120 -~~~~~~~d~-------~fD~Ii~d~iy~~  141 (158)
                       ...+...|.       +||+|+++|+|..
T Consensus       236 ~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~  265 (445)
T 2okc_A          236 DRSPIVCEDSLEKEPSTLVDVILANPPFGT  265 (445)
T ss_dssp             SCCSEEECCTTTSCCSSCEEEEEECCCSSC
T ss_pred             CCCCEeeCCCCCCcccCCcCEEEECCCCCC
Confidence             455655532       7999998888875

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.71  E-value=5.3e-08  Score=73.96  Aligned_cols=70  Identities=10%  Similarity=0.179  Sum_probs=52.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc-C-------CEEEEEecCChHHHHHHHHHHHHHcC------CcceEEEcC-------
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV-G-------SNVTLTDDSNRIEVLKNMRRVCEMNK------LNCRLLMTS-------  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~-g-------~~v~~tD~~~~~~~l~~~~~n~~~n~------~~~~~~~~d-------  127 (158)
                      .++.+|||+|||+|..+..+++. +       .+|+++|+++.  +++.+++|+..++      -++.+...|       
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  160 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAE--LVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP  160 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHH--HHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHH--HHHHHHHHHHhcCccccCCCceEEEECCcccCCCc
Confidence            45779999999999999988773 4       49999999965  9999999987654      134444333       


Q ss_pred             -CCCcEEE-ecCCCC
Q 031506          128 -LPPSHIC-SRVLQD  140 (158)
Q Consensus       128 -~~fD~Ii-~d~iy~  140 (158)
                       .+||+|+ ..++.+
T Consensus       161 ~~~fD~I~~~~~~~~  175 (227)
T 1r18_A          161 NAPYNAIHVGAAAPD  175 (227)
T ss_dssp             GCSEEEEEECSCBSS
T ss_pred             CCCccEEEECCchHH
Confidence             3799999 555544

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.69  E-value=1.3e-09  Score=84.52  Aligned_cols=80  Identities=15%  Similarity=0.147  Sum_probs=57.1

Q ss_pred             HHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC---------CC
Q 031506           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL---------PP  130 (158)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~---------~f  130 (158)
                      +.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.  +++.+++|+.. ..++.+...|.         +|
T Consensus        19 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~--~~~~a~~~~~~-~~~v~~~~~D~~~~~~~~~~~f   95 (245)
T 1yub_A           19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH--LFNLSSEKLKL-NTRVTLIHQDILQFQFPNKQRY   95 (245)
T ss_dssp             HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCS--SSSSSSCTTTT-CSEEEECCSCCTTTTCCCSSEE
T ss_pred             HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHH--HHHHHHHHhcc-CCceEEEECChhhcCcccCCCc
Confidence            33443333346779999999999999999998999999999987  88888877652 22334433332         24


Q ss_pred             cEEEecCCCCCcc
Q 031506          131 SHICSRVLQDQSS  143 (158)
Q Consensus       131 D~Ii~d~iy~~~~  143 (158)
                       .|+++++|+...
T Consensus        96 -~vv~n~Py~~~~  107 (245)
T 1yub_A           96 -KIVGNIPYHLST  107 (245)
T ss_dssp             -EEEEECCSSSCH
T ss_pred             -EEEEeCCccccH
Confidence             455999998763

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.69  E-value=2.2e-08  Score=79.68  Aligned_cols=80  Identities=11%  Similarity=0.019  Sum_probs=57.5

Q ss_pred             HHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCE----EEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------
Q 031506           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN----VTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------  128 (158)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~----v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------  128 (158)
                      ++.+.......++.+|||+|||+|.++..+++.+.+    |+++|+++.  |++.+++|.   ..++++...|.      
T Consensus        31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~--~l~~a~~~~---~~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRD--LIGRLEQRF---GELLELHAGDALTFDFG  105 (279)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHH--HHHHHHHHH---GGGEEEEESCGGGCCGG
T ss_pred             HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHH--HHHHHHHhc---CCCcEEEECChhcCChh
Confidence            344444333446789999999999999999988777    999999965  999999984   22355554442      


Q ss_pred             -C-------CcEEEecCCCCCcc
Q 031506          129 -P-------PSHICSRVLQDQSS  143 (158)
Q Consensus       129 -~-------fD~Ii~d~iy~~~~  143 (158)
                       .       ...|+++++|+...
T Consensus       106 ~~~~~~~~~~~~vv~NlPY~iss  128 (279)
T 3uzu_A          106 SIARPGDEPSLRIIGNLPYNISS  128 (279)
T ss_dssp             GGSCSSSSCCEEEEEECCHHHHH
T ss_pred             HhcccccCCceEEEEccCccccH
Confidence             1       12355999998754

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.69  E-value=8.6e-09  Score=79.18  Aligned_cols=101  Identities=10%  Similarity=-0.046  Sum_probs=62.9

Q ss_pred             EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhh--cCCEEEEEecCChHHHHHHH---HHHHHHcCCc-ceE
Q 031506           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNM---RRVCEMNKLN-CRL  123 (158)
Q Consensus        50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~--~g~~v~~tD~~~~~~~l~~~---~~n~~~n~~~-~~~  123 (158)
                      ..|.....+..+.      .++.+|||+|||+|..++.+++  .+.+|+++|+++. .|++.+   ++|+..+++. +.+
T Consensus        10 ~~~~~~~~~~~~~------~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~-~ml~~A~~A~~~~~~~~~~~v~~   82 (225)
T 3p2e_A           10 VDLSKDELTEIIG------QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKE-NLFDISKKIIKKPSKGGLSNVVF   82 (225)
T ss_dssp             ECCCHHHHHHHHT------TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCG-GGHHHHHHHTSCGGGTCCSSEEE
T ss_pred             ccCCHHHHHHHhC------CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHH-HHHHHHHHHHHHHHHcCCCCeEE
Confidence            4566555443322      2467899999999999998884  4569999999952 366665   7777766653 455


Q ss_pred             EEcCC------CCcEEE-ecCCCCCc--------cHHHHHHHHHHHhcC
Q 031506          124 LMTSL------PPSHIC-SRVLQDQS--------SLRLIIIEVGIILLS  157 (158)
Q Consensus       124 ~~~d~------~fD~Ii-~d~iy~~~--------~~~~ll~tl~~ll~~  157 (158)
                      ...|.      .||.|. ..+.+...        ..+.+++.++.+|++
T Consensus        83 ~~~d~~~l~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp  131 (225)
T 3p2e_A           83 VIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKK  131 (225)
T ss_dssp             ECCBTTBCCGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEE
T ss_pred             EEcCHHHhhhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCC
Confidence            44433      245554 22222211        124567777777654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.67  E-value=7e-08  Score=69.01  Aligned_cols=92  Identities=14%  Similarity=0.009  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc----
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT----  126 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~----  126 (158)
                      +...+.+.+.......++.+|||+|||+|..+..+++.   +.+++++|+++   +++.       .  ++.+...    
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~~-------~--~~~~~~~d~~~   73 (180)
T 1ej0_A            6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDPI-------V--GVDFLQGDFRD   73 (180)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCCC-------T--TEEEEESCTTS
T ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---cccc-------C--cEEEEEccccc
Confidence            44455555555443456789999999999999988876   36999999996   3321       1  1222222    


Q ss_pred             ------------CCCCcEEEe-cCCCCCccH-----------HHHHHHHHHHhcC
Q 031506          127 ------------SLPPSHICS-RVLQDQSSL-----------RLIIIEVGIILLS  157 (158)
Q Consensus       127 ------------d~~fD~Ii~-d~iy~~~~~-----------~~ll~tl~~ll~~  157 (158)
                                  +.+||+|++ .+++.....           ..+++.+..+|.+
T Consensus        74 ~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  128 (180)
T 1ej0_A           74 ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP  128 (180)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             chhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCC
Confidence                        237999994 444444443           5777777776653

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.67  E-value=1.5e-08  Score=80.49  Aligned_cols=86  Identities=16%  Similarity=0.037  Sum_probs=58.5

Q ss_pred             CCCeEEEeccCCCH----HHHHHhhc------CCEEEEEecCChHHHHHHHHHHHHH-----------------------
Q 031506           70 SGANVVELGAGTSL----PGLVAAKV------GSNVTLTDDSNRIEVLKNMRRVCEM-----------------------  116 (158)
Q Consensus        70 ~~~~vLELG~GtGl----~~i~~a~~------g~~v~~tD~~~~~~~l~~~~~n~~~-----------------------  116 (158)
                      ++.+|+|+|||||-    +++.++..      +.+|++||+++.  |++.+++|+-.                       
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~--~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~  182 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTE--VLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH  182 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHH--HHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHH--HHHHHHhcCCchhhhhcCCHHHHHHHhhccccCC
Confidence            35699999999998    67666654      359999999975  99999988510                       


Q ss_pred             cC-C--------cceEEEcC---------CCCcEEE-ecCCCCCcc--HHHHHHHHHHHhcC
Q 031506          117 NK-L--------NCRLLMTS---------LPPSHIC-SRVLQDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       117 n~-~--------~~~~~~~d---------~~fD~Ii-~d~iy~~~~--~~~ll~tl~~ll~~  157 (158)
                      ++ .        .+.+...|         .+||+|+ .+++.|.+.  ...+++.+...|.+
T Consensus       183 ~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p  244 (274)
T 1af7_A          183 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP  244 (274)
T ss_dssp             CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE
T ss_pred             CCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC
Confidence            00 0        12333222         2699999 788654433  37788877776654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.66  E-value=3.1e-08  Score=81.67  Aligned_cols=79  Identities=6%  Similarity=-0.101  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC---
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---  127 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---  127 (158)
                      ....+++++.+.....++.+|||+|||+|.+++.++++   +.+|+++|+++.  +++.+        ..+.+...|   
T Consensus        23 TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~--~~~~a--------~~~~~~~~D~~~   92 (421)
T 2ih2_A           23 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK--ALDLP--------PWAEGILADFLL   92 (421)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTT--TCCCC--------TTEEEEESCGGG
T ss_pred             CCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHH--HHHhC--------CCCcEEeCChhh
Confidence            34557777766443345669999999999999988874   469999999986  66654        123344333   


Q ss_pred             ----CCCcEEEecCCCCCc
Q 031506          128 ----LPPSHICSRVLQDQS  142 (158)
Q Consensus       128 ----~~fD~Ii~d~iy~~~  142 (158)
                          .+||+|+++|+|...
T Consensus        93 ~~~~~~fD~Ii~NPPy~~~  111 (421)
T 2ih2_A           93 WEPGEAFDLILGNPPYGIV  111 (421)
T ss_dssp             CCCSSCEEEEEECCCCCCB
T ss_pred             cCccCCCCEEEECcCccCc
Confidence                279999988888643

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.66  E-value=1.2e-08  Score=79.94  Aligned_cols=81  Identities=10%  Similarity=0.109  Sum_probs=56.1

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCE--EEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN--VTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------  128 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~--v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------  128 (158)
                      +++.+.+.....++.+|||+|||+|.++. +++ +.+  |+++|+++.  |++.+++|...+ -++.+...|.       
T Consensus         9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~--~~~~a~~~~~~~-~~v~~i~~D~~~~~~~~   83 (252)
T 1qyr_A            9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRD--LAARLQTHPFLG-PKLTIYQQDAMTFNFGE   83 (252)
T ss_dssp             HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHH--HHHHHHTCTTTG-GGEEEECSCGGGCCHHH
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHH--HHHHHHHHhccC-CceEEEECchhhCCHHH
Confidence            34445444334467799999999999999 654 567  999999965  999999887543 1344544432       


Q ss_pred             ------CCcEEEecCCCCCcc
Q 031506          129 ------PPSHICSRVLQDQSS  143 (158)
Q Consensus       129 ------~fD~Ii~d~iy~~~~  143 (158)
                            ..+.|+++++|+...
T Consensus        84 ~~~~~~~~~~vvsNlPY~i~~  104 (252)
T 1qyr_A           84 LAEKMGQPLRVFGNLPYNIST  104 (252)
T ss_dssp             HHHHHTSCEEEEEECCTTTHH
T ss_pred             hhcccCCceEEEECCCCCccH
Confidence                  123555999998753

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.65  E-value=3.9e-08  Score=75.91  Aligned_cols=80  Identities=14%  Similarity=-0.101  Sum_probs=56.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc------CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-----------CC-CCc
Q 031506           70 SGANVVELGAGTSLPGLVAAKV------GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-----------SL-PPS  131 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~------g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-----------d~-~fD  131 (158)
                      ++.+|||+|||+|..++.+++.      +.+|+++|+++.  |++.++ +.   ..++++...           +. +||
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~--~l~~a~-~~---~~~v~~~~gD~~~~~~l~~~~~~~fD  154 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS--RCQIPA-SD---MENITLHQGDCSDLTTFEHLREMAHP  154 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT--TCCCCG-GG---CTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChH--HHHHHh-cc---CCceEEEECcchhHHHHHhhccCCCC
Confidence            4679999999999999988876      579999999986  777665 11   122333322           11 699


Q ss_pred             EEEecCCCCCccHHHHHHHHHH-HhcC
Q 031506          132 HICSRVLQDQSSLRLIIIEVGI-ILLS  157 (158)
Q Consensus       132 ~Ii~d~iy~~~~~~~ll~tl~~-ll~~  157 (158)
                      +|++|..+  .....++..+.. +|.+
T Consensus       155 ~I~~d~~~--~~~~~~l~~~~r~~Lkp  179 (236)
T 2bm8_A          155 LIFIDNAH--ANTFNIMKWAVDHLLEE  179 (236)
T ss_dssp             EEEEESSC--SSHHHHHHHHHHHTCCT
T ss_pred             EEEECCch--HhHHHHHHHHHHhhCCC
Confidence            99955442  367778887774 6654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.65  E-value=1.4e-08  Score=80.69  Aligned_cols=103  Identities=14%  Similarity=-0.019  Sum_probs=62.7

Q ss_pred             EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH---HcCCcceEE--
Q 031506           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE---MNKLNCRLL--  124 (158)
Q Consensus        50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~---~n~~~~~~~--  124 (158)
                      .+-.++..|.+.+.. ....++.+|||||||+|..+..++++ .+|+++|+++   |+..++++..   ..+.++.+.  
T Consensus        63 ~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~---m~~~a~~~~~~~~~~~~~v~~~~~  137 (276)
T 2wa2_A           63 AVSRGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT---LGTSGHEKPRLVETFGWNLITFKS  137 (276)
T ss_dssp             --CHHHHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC---CCCTTSCCCCCCCCTTGGGEEEEC
T ss_pred             cCchHHHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch---hhhhhhhchhhhhhcCCCeEEEec
Confidence            344566667666554 33346789999999999999999888 7999999997   4322221100   011134444  


Q ss_pred             EcC------CCCcEEEecCCCCCccH----H---HHHHHHHHHhcC
Q 031506          125 MTS------LPPSHICSRVLQDQSSL----R---LIIIEVGIILLS  157 (158)
Q Consensus       125 ~~d------~~fD~Ii~d~iy~~~~~----~---~ll~tl~~ll~~  157 (158)
                      ..|      .+||+|++|..++....    .   .+++.+..+|.+
T Consensus       138 ~~D~~~l~~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~Lkp  183 (276)
T 2wa2_A          138 KVDVTKMEPFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEY  183 (276)
T ss_dssp             SCCGGGCCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHhhCCCCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhcc
Confidence            333      37999997765332221    1   256666666653

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.65  E-value=1.2e-07  Score=76.44  Aligned_cols=81  Identities=15%  Similarity=0.062  Sum_probs=60.8

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-  127 (158)
                      .++..++.++.    ..++.+|||+|||+|..++.++..   ..+|+++|+++.  +++.+++|++.+++. +.+...| 
T Consensus        89 ~~s~l~~~~l~----~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~--~l~~~~~n~~r~g~~~v~~~~~D~  162 (309)
T 2b9e_A           89 RASCLPAMLLD----PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK--RLASMATLLARAGVSCCELAEEDF  162 (309)
T ss_dssp             TGGGHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             HHHHHHHHHhC----CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCeEEEEeCCh
Confidence            34444444442    235789999999999999987764   259999999965  999999999998863 4555443 


Q ss_pred             ----------CCCcEEEecCCC
Q 031506          128 ----------LPPSHICSRVLQ  139 (158)
Q Consensus       128 ----------~~fD~Ii~d~iy  139 (158)
                                .+||.|+.|++|
T Consensus       163 ~~~~~~~~~~~~fD~Vl~D~Pc  184 (309)
T 2b9e_A          163 LAVSPSDPRYHEVHYILLDPSC  184 (309)
T ss_dssp             GGSCTTCGGGTTEEEEEECCCC
T ss_pred             HhcCccccccCCCCEEEEcCCc
Confidence                      158999988876

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.64  E-value=1.6e-08  Score=79.87  Aligned_cols=103  Identities=17%  Similarity=0.008  Sum_probs=63.5

Q ss_pred             EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHH---HHcCCcceEE--
Q 031506           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC---EMNKLNCRLL--  124 (158)
Q Consensus        50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~---~~n~~~~~~~--  124 (158)
                      .+-.++..|.+.+.. ....++.+|||||||+|..+..+++. .+|+++|+++   |+..++++.   +..+..+.+.  
T Consensus        55 ~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~---m~~~a~~~~~~~~~~~~~v~~~~~  129 (265)
T 2oxt_A           55 SVSRGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT---LGVGGHEVPRITESYGWNIVKFKS  129 (265)
T ss_dssp             CSSTHHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC---CCCSSCCCCCCCCBTTGGGEEEEC
T ss_pred             ccchHHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch---hhhhhhhhhhhhhccCCCeEEEec
Confidence            344567777776655 33346789999999999999999888 7999999997   322221110   0011134444  


Q ss_pred             EcCC------CCcEEEecCCCCCccH----H---HHHHHHHHHhcC
Q 031506          125 MTSL------PPSHICSRVLQDQSSL----R---LIIIEVGIILLS  157 (158)
Q Consensus       125 ~~d~------~fD~Ii~d~iy~~~~~----~---~ll~tl~~ll~~  157 (158)
                      ..|.      +||+|++|..++....    .   .+++.+..+|.+
T Consensus       130 ~~D~~~l~~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~Lkp  175 (265)
T 2oxt_A          130 RVDIHTLPVERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVK  175 (265)
T ss_dssp             SCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHhHCCCCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhcc
Confidence            3332      7999997766332221    1   255666565543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.63  E-value=6.7e-08  Score=78.33  Aligned_cols=85  Identities=13%  Similarity=0.101  Sum_probs=61.8

Q ss_pred             CCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcC-CcceEEEcC----------CCCcEEEecC
Q 031506           71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRLLMTS----------LPPSHICSRV  137 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~~d----------~~fD~Ii~d~  137 (158)
                      ..+|||||||+|.++..+++.  +.+|+++|+++.  +++.++++...+. -++++...|          .+||+|++|+
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~--vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~  167 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAE--LARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV  167 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHH--HHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHH--HHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence            349999999999999988873  569999999965  9999999986542 235554443          3799999765


Q ss_pred             CCC---Ccc--HHHHHHHHHHHhcC
Q 031506          138 LQD---QSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       138 iy~---~~~--~~~ll~tl~~ll~~  157 (158)
                      ...   ...  ..++++.++.+|..
T Consensus       168 ~~~~~~~~~L~t~efl~~~~r~Lkp  192 (317)
T 3gjy_A          168 FAGAITPQNFTTVEFFEHCHRGLAP  192 (317)
T ss_dssp             STTSCCCGGGSBHHHHHHHHHHEEE
T ss_pred             CCccccchhhhHHHHHHHHHHhcCC
Confidence            432   222  26778888777653

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.62  E-value=7.6e-08  Score=74.61  Aligned_cols=62  Identities=15%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRV  137 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~  137 (158)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.  +++.++++..    .+.+...|        .+||+|+ ..+
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~--~~~~a~~~~~----~~~~~~~d~~~~~~~~~~fD~v~~~~~  157 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV--AIKAAAKRYP----QVTFCVASSHRLPFSDTSMDAIIRIYA  157 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHH--HHHHHHHHCT----TSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHH--HHHHHHHhCC----CcEEEEcchhhCCCCCCceeEEEEeCC
Confidence            5779999999999999988886  679999999965  9998887642    23333332        3799999 655

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.60  E-value=1.3e-08  Score=76.66  Aligned_cols=86  Identities=14%  Similarity=0.142  Sum_probs=56.8

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHH----HcCC-cceEEEcCC---CC----cEEEe
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCE----MNKL-NCRLLMTSL---PP----SHICS  135 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~----~n~~-~~~~~~~d~---~f----D~Ii~  135 (158)
                      ++.+|||+|||+|..++.+++.  +.+|+++|+++.  |++.+.++++    .++. ++.+...|.   ++    |.|..
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~--~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~  104 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKS--RMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV  104 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGG--GGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence            5679999999999999999888  569999999986  8886544443    3333 355555543   22    56651


Q ss_pred             cCCC------CCccHHHHHHHHHHHhcC
Q 031506          136 RVLQ------DQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy------~~~~~~~ll~tl~~ll~~  157 (158)
                      ...+      +.++...+++.+..+|.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  132 (218)
T 3mq2_A          105 LMPWGSLLRGVLGSSPEMLRGMAAVCRP  132 (218)
T ss_dssp             ESCCHHHHHHHHTSSSHHHHHHHHTEEE
T ss_pred             EccchhhhhhhhccHHHHHHHHHHHcCC
Confidence            1111      222236778888777654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.53  E-value=2.4e-07  Score=69.40  Aligned_cols=69  Identities=14%  Similarity=0.097  Sum_probs=52.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCcEEE-ecCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPSHIC-SRVLQ  139 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD~Ii-~d~iy  139 (158)
                      .++.+|||+|||+|..+..+   +.+|+++|+++.                .+.+...        +.+||+|+ +.+++
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  126 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSI---RNPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM  126 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCCC
T ss_pred             CCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhcc
Confidence            35679999999999998876   368999999973                1222222        23799999 88886


Q ss_pred             CCccHHHHHHHHHHHhcC
Q 031506          140 DQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll~~  157 (158)
                       ......+++.+..+|.+
T Consensus       127 -~~~~~~~l~~~~~~L~~  143 (215)
T 2zfu_A          127 -GTNIRDFLEEANRVLKP  143 (215)
T ss_dssp             -SSCHHHHHHHHHHHEEE
T ss_pred             -ccCHHHHHHHHHHhCCC
Confidence             47888999999888764

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.51  E-value=1.7e-07  Score=75.99  Aligned_cols=80  Identities=14%  Similarity=0.216  Sum_probs=62.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----CCcEEE-ecCCCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----PPSHIC-SRVLQDQ  141 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----~fD~Ii-~d~iy~~  141 (158)
                      +..+|||+|||+|..+..+++.  +.+++++|+ +.  +++.++++   .  .+++...|.     .||+|+ ..++++.
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~--~~~~a~~~---~--~v~~~~~d~~~~~p~~D~v~~~~~lh~~  259 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQ--VVENLSGS---N--NLTYVGGDMFTSIPNADAVLLKYILHNW  259 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH--HHTTCCCB---T--TEEEEECCTTTCCCCCSEEEEESCGGGS
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HH--HHhhcccC---C--CcEEEeccccCCCCCccEEEeehhhccC
Confidence            4579999999999999988876  458999999 54  88766541   1  255555544     599999 9999988


Q ss_pred             ccHH--HHHHHHHHHhcC
Q 031506          142 SSLR--LIIIEVGIILLS  157 (158)
Q Consensus       142 ~~~~--~ll~tl~~ll~~  157 (158)
                      ++..  .+++.++..|.+
T Consensus       260 ~d~~~~~~l~~~~~~L~p  277 (352)
T 1fp2_A          260 TDKDCLRILKKCKEAVTN  277 (352)
T ss_dssp             CHHHHHHHHHHHHHHHSG
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            7766  899999888875

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.48  E-value=3.9e-07  Score=66.14  Aligned_cols=46  Identities=30%  Similarity=0.267  Sum_probs=38.5

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCC-HHHHHHhh-cCCEEEEEecCCh
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAK-VGSNVTLTDDSNR  103 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtG-l~~i~~a~-~g~~v~~tD~~~~  103 (158)
                      ..|++|+.+..  ..+.+|||+|||.| -.+..+++ .|.+|++||+++.
T Consensus        23 e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~   70 (153)
T 2k4m_A           23 NDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPS   70 (153)
T ss_dssp             HHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCS
T ss_pred             HHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCcc
Confidence            45899997743  23569999999999 59998886 9999999999985

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.44  E-value=1.8e-07  Score=75.71  Aligned_cols=84  Identities=14%  Similarity=0.190  Sum_probs=60.7

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC-----CCcEEE-ecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL-----PPSHIC-SRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~-----~fD~Ii-~d~iy  139 (158)
                      ++.+|||+|||+|..+..+++...  +++++|++   +++.  ++++...+.  ++.+...|.     +||+|+ ..+++
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~---~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh  258 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA---EVVA--RHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILH  258 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH---HHHT--TCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGG
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecCH---HHhh--cccccccCCCCCeEEEecCCCCCCCCCcEEEEehhcc
Confidence            467999999999999998887643  78888884   2444  333332222  245555554     799999 99998


Q ss_pred             CCccH--HHHHHHHHHHhcCC
Q 031506          140 DQSSL--RLIIIEVGIILLSS  158 (158)
Q Consensus       140 ~~~~~--~~ll~tl~~ll~~~  158 (158)
                      +.++.  ..+++.++..|.++
T Consensus       259 ~~~d~~~~~~L~~~~~~Lkpg  279 (348)
T 3lst_A          259 NWGDEDSVRILTNCRRVMPAH  279 (348)
T ss_dssp             GSCHHHHHHHHHHHHHTCCTT
T ss_pred             CCCHHHHHHHHHHHHHhcCCC
Confidence            87766  68999998887653

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.39  E-value=6.1e-07  Score=77.30  Aligned_cols=83  Identities=8%  Similarity=-0.033  Sum_probs=61.4

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--------------------CCEEEEEecCChHHHHHHHHHHHHHc
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------------------GSNVTLTDDSNRIEVLKNMRRVCEMN  117 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--------------------g~~v~~tD~~~~~~~l~~~~~n~~~n  117 (158)
                      ++++|.+......+.+|+|.+||||.+.+.+++.                    ..+++++|+++.  ++..++.|+..+
T Consensus       157 iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~--~~~lA~~nl~l~  234 (541)
T 2ar0_A          157 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG--TRRLALMNCLLH  234 (541)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH--HHHHHHHHHHTT
T ss_pred             HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHH--HHHHHHHHHHHh
Confidence            4444444323345779999999999998877653                    137999999965  999999999988


Q ss_pred             CCc------ceEEEcC---------CCCcEEEecCCCCCc
Q 031506          118 KLN------CRLLMTS---------LPPSHICSRVLQDQS  142 (158)
Q Consensus       118 ~~~------~~~~~~d---------~~fD~Ii~d~iy~~~  142 (158)
                      ++.      ..+...|         .+||+|+++|+|...
T Consensus       235 gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~  274 (541)
T 2ar0_A          235 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA  274 (541)
T ss_dssp             TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTC
T ss_pred             CCCccccccCCeEeCCCcccccccccCCeEEEECCCcccc
Confidence            765      4555443         279999998888754

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.39  E-value=1.4e-07  Score=74.21  Aligned_cols=81  Identities=10%  Similarity=-0.055  Sum_probs=55.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH-----cCCcceEEEcC-----CCCcEEEecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRLLMTS-----LPPSHICSRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~~d-----~~fD~Ii~d~iy  139 (158)
                      .+++|||+|||+|.++..+++.+.+|+++|+++.  +++.+++++..     ..-++++...|     .+||+|++|.. 
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~--~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~~-  148 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEK--ILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQE-  148 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHH--HHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESSC-
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHH--HHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECCC-
Confidence            4679999999999999977766679999999965  99988877532     12234444444     26999996642 


Q ss_pred             CCccHHHHHHHHHHHhc
Q 031506          140 DQSSLRLIIIEVGIILL  156 (158)
Q Consensus       140 ~~~~~~~ll~tl~~ll~  156 (158)
                      .+   ..+++.+...|.
T Consensus       149 dp---~~~~~~~~~~L~  162 (262)
T 2cmg_A          149 PD---IHRIDGLKRMLK  162 (262)
T ss_dssp             CC---HHHHHHHHTTEE
T ss_pred             Ch---HHHHHHHHHhcC
Confidence            11   225555555544

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.39  E-value=4.3e-07  Score=74.15  Aligned_cols=80  Identities=11%  Similarity=0.042  Sum_probs=60.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----CCcEEE-ecCCCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----PPSHIC-SRVLQDQ  141 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----~fD~Ii-~d~iy~~  141 (158)
                      ++.+|||+|||+|..+..+++.+.  +++++|+ +  ++++.++++     ..+++...|.     .||+|+ ..++++.
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~--~~~~~a~~~-----~~v~~~~~d~~~~~~~~D~v~~~~~lh~~  280 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-P--QVIENAPPL-----SGIEHVGGDMFASVPQGDAMILKAVCHNW  280 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHTTCCCC-----TTEEEEECCTTTCCCCEEEEEEESSGGGS
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-H--HHHHhhhhc-----CCCEEEeCCcccCCCCCCEEEEecccccC
Confidence            567999999999999998888754  7888898 4  488766542     1245554443     489999 9999888


Q ss_pred             ccHH--HHHHHHHHHhcC
Q 031506          142 SSLR--LIIIEVGIILLS  157 (158)
Q Consensus       142 ~~~~--~ll~tl~~ll~~  157 (158)
                      ++..  .+++.++..|.+
T Consensus       281 ~d~~~~~~l~~~~~~L~p  298 (372)
T 1fp1_D          281 SDEKCIEFLSNCHKALSP  298 (372)
T ss_dssp             CHHHHHHHHHHHHHHEEE
T ss_pred             CHHHHHHHHHHHHHhcCC
Confidence            7766  888888887764

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.39  E-value=1e-06  Score=77.34  Aligned_cols=80  Identities=14%  Similarity=0.079  Sum_probs=56.4

Q ss_pred             ccCCCCCeEEEeccCCCHHHHH---HhhcCC---EEEEEecCChHHHHHHHHHHHHHcCCcce--EEEcCC-------CC
Q 031506           66 RYRFSGANVVELGAGTSLPGLV---AAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCR--LLMTSL-------PP  130 (158)
Q Consensus        66 ~~~~~~~~vLELG~GtGl~~i~---~a~~g~---~v~~tD~~~~~~~l~~~~~n~~~n~~~~~--~~~~d~-------~f  130 (158)
                      ....+.+.||++|||+|.++..   +++.+.   +|+|++-++   +...++++++.|+...+  +...|.       ++
T Consensus       353 ~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp---~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKV  429 (637)
T 4gqb_A          353 EKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP---NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKA  429 (637)
T ss_dssp             GTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH---HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCE
T ss_pred             cccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH---HHHHHHHHHHhccCCCeEEEEeCcceeccCCccc
Confidence            3445667899999999999544   444332   689999985   66778888999987644  444332       89


Q ss_pred             cEEEecCCCCCccHHHHH
Q 031506          131 SHICSRVLQDQSSLRLII  148 (158)
Q Consensus       131 D~Ii~d~iy~~~~~~~ll  148 (158)
                      |+||++.+-+.-..+.++
T Consensus       430 DIIVSEwMG~fLl~E~ml  447 (637)
T 4gqb_A          430 DIIVSELLGSFADNELSP  447 (637)
T ss_dssp             EEEECCCCBTTBGGGCHH
T ss_pred             CEEEEEcCcccccccCCH
Confidence            999988875554444444

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.37  E-value=1.3e-06  Score=75.45  Aligned_cols=84  Identities=8%  Similarity=-0.057  Sum_probs=61.0

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-----CCEEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEc-
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMT-  126 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-----g~~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~-  126 (158)
                      ..|++.+........+.+|+|.+||||.+.+.+++.     ..++++.|+++.  ++..++.|+..+++.   ..+... 
T Consensus       207 ~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~--~~~lA~~Nl~l~gi~~~~~~I~~gD  284 (542)
T 3lkd_A          207 KLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTS--TYNLARMNMILHGVPIENQFLHNAD  284 (542)
T ss_dssp             HHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHH--HHHHHHHHHHHTTCCGGGEEEEESC
T ss_pred             HHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHH--HHHHHHHHHHHcCCCcCccceEecc
Confidence            344444442222346779999999999988877665     458999999965  999999999998873   334333 


Q ss_pred             ----C------CCCcEEEecCCCCC
Q 031506          127 ----S------LPPSHICSRVLQDQ  141 (158)
Q Consensus       127 ----d------~~fD~Ii~d~iy~~  141 (158)
                          +      .+||+|+++|+|..
T Consensus       285 tL~~d~p~~~~~~fD~IvaNPPf~~  309 (542)
T 3lkd_A          285 TLDEDWPTQEPTNFDGVLMNPPYSA  309 (542)
T ss_dssp             TTTSCSCCSSCCCBSEEEECCCTTC
T ss_pred             eecccccccccccccEEEecCCcCC
Confidence                2      26999999999863

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.37  E-value=7.5e-07  Score=66.57  Aligned_cols=50  Identities=16%  Similarity=0.101  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCCh
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~  103 (158)
                      ++..|.+.+.+.....++.+|||||||+|..+..+++++.+|+++|+++.
T Consensus         9 a~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~   58 (191)
T 3dou_A            9 AAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEM   58 (191)
T ss_dssp             HHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCC
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccc
Confidence            56667676665544457889999999999999999998889999999973

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.34  E-value=4.1e-06  Score=68.13  Aligned_cols=85  Identities=13%  Similarity=0.094  Sum_probs=62.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcCC------CCcEEE-ecCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTSL------PPSHIC-SRVLQ  139 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d~------~fD~Ii-~d~iy  139 (158)
                      ...+|||+|||+|..++.++++..  ++++.|+   |++++.+++++...+. ++++...|.      .+|+|+ ..+++
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl---p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh  255 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI---PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLH  255 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC---HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGG
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC---HHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeecc
Confidence            456899999999999998888755  6777777   4589999888764432 355555543      689999 99998


Q ss_pred             CCcc--HHHHHHHHHHHhcC
Q 031506          140 DQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       140 ~~~~--~~~ll~tl~~ll~~  157 (158)
                      +.++  ...+++.++..|.+
T Consensus       256 ~~~d~~~~~iL~~~~~al~p  275 (353)
T 4a6d_A          256 DWADGKCSHLLERIYHTCKP  275 (353)
T ss_dssp             GSCHHHHHHHHHHHHHHCCT
T ss_pred             cCCHHHHHHHHHHHHhhCCC
Confidence            7655  35678888776654

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.32  E-value=5.6e-07  Score=72.27  Aligned_cols=47  Identities=21%  Similarity=0.142  Sum_probs=37.1

Q ss_pred             cchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEec
Q 031506           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDD  100 (158)
Q Consensus        52 W~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~  100 (158)
                      -.++..|.+.+.+ ....++.+|||||||+|..+..++++ .+|+++|+
T Consensus        65 sR~a~KL~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~  111 (305)
T 2p41_A           65 SRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKG  111 (305)
T ss_dssp             STHHHHHHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEE
T ss_pred             ccHHHHHHHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEec
Confidence            3466677665555 33345789999999999999999988 68999999

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.27  E-value=1.2e-06  Score=71.12  Aligned_cols=80  Identities=16%  Similarity=0.167  Sum_probs=60.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----CCcEEE-ecCCCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----PPSHIC-SRVLQDQ  141 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----~fD~Ii-~d~iy~~  141 (158)
                      ...+|||+|||+|..+..+++..  .+++++|+ +  .+++.+++.     -.+.+...|.     .||+|+ ..++++.
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~-----~~v~~~~~d~~~~~~~~D~v~~~~vlh~~  264 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P--QVVGNLTGN-----ENLNFVGGDMFKSIPSADAVLLKWVLHDW  264 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H--HHHSSCCCC-----SSEEEEECCTTTCCCCCSEEEEESCGGGS
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H--HHHhhcccC-----CCcEEEeCccCCCCCCceEEEEcccccCC
Confidence            45799999999999999888764  48999998 3  377665531     1245555443     699999 9999988


Q ss_pred             ccHH--HHHHHHHHHhcC
Q 031506          142 SSLR--LIIIEVGIILLS  157 (158)
Q Consensus       142 ~~~~--~ll~tl~~ll~~  157 (158)
                      ++..  .+++.+...|.+
T Consensus       265 ~d~~~~~~l~~~~~~L~p  282 (358)
T 1zg3_A          265 NDEQSLKILKNSKEAISH  282 (358)
T ss_dssp             CHHHHHHHHHHHHHHTGG
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            7755  899998888765

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.25  E-value=1e-06  Score=76.03  Aligned_cols=67  Identities=9%  Similarity=0.002  Sum_probs=52.9

Q ss_pred             eEEEeccCCCHHHHHHhhc-----------------CCEEEEEecCChHHHHHHHHHHHHHcCCcceE--EEcC------
Q 031506           73 NVVELGAGTSLPGLVAAKV-----------------GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LMTS------  127 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~-----------------g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~~d------  127 (158)
                      +|||.+||||.+.+.+++.                 ..++++.|+++.  ++..++.|+..+++...+  ...|      
T Consensus       247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~--~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~  324 (544)
T 3khk_A          247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPT--TWKLAAMNMVIRGIDFNFGKKNADSFLDDQ  324 (544)
T ss_dssp             EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHH--HHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred             eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHH--HHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence            8999999999888766432                 348999999965  999999999998876443  2222      


Q ss_pred             ---CCCcEEEecCCCCC
Q 031506          128 ---LPPSHICSRVLQDQ  141 (158)
Q Consensus       128 ---~~fD~Ii~d~iy~~  141 (158)
                         .+||+|+++|+|..
T Consensus       325 ~~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          325 HPDLRADFVMTNPPFNM  341 (544)
T ss_dssp             CTTCCEEEEEECCCSSC
T ss_pred             cccccccEEEECCCcCC
Confidence               27999999999875

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.25  E-value=1.4e-06  Score=72.85  Aligned_cols=78  Identities=14%  Similarity=0.064  Sum_probs=54.3

Q ss_pred             CCCeEEEeccC------CCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------------
Q 031506           70 SGANVVELGAG------TSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------------  127 (158)
Q Consensus        70 ~~~~vLELG~G------tGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------------  127 (158)
                      ++.+|||||||      ||..++.+++.   +++|+++|+++.  |.        .+.-++++...|             
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~--m~--------~~~~rI~fv~GDa~dlpf~~~l~~~  285 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDK--SH--------VDELRIRTIQGDQNDAEFLDRIARR  285 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCC--GG--------GCBTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHH--Hh--------hcCCCcEEEEecccccchhhhhhcc
Confidence            56799999999      77777755543   569999999986  52        122234554443             


Q ss_pred             -CCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 -LPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 -~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                       .+||+|++|...+.......++.+..+|++
T Consensus       286 d~sFDlVisdgsH~~~d~~~aL~el~rvLKP  316 (419)
T 3sso_A          286 YGPFDIVIDDGSHINAHVRTSFAALFPHVRP  316 (419)
T ss_dssp             HCCEEEEEECSCCCHHHHHHHHHHHGGGEEE
T ss_pred             cCCccEEEECCcccchhHHHHHHHHHHhcCC
Confidence             379999977666666667777777766654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.23  E-value=1.6e-06  Score=64.06  Aligned_cols=49  Identities=10%  Similarity=-0.013  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc----CCEEEEEecCC
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSN  102 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~----g~~v~~tD~~~  102 (158)
                      ++..|.+.+.......++.+|||||||+|..++.++++    +.+|+++|+++
T Consensus         6 ~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~   58 (201)
T 2plw_A            6 AAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI   58 (201)
T ss_dssp             THHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence            45566665544433346779999999999999988875    36999999997

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.21  E-value=4.4e-06  Score=66.46  Aligned_cols=58  Identities=22%  Similarity=0.130  Sum_probs=47.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN  117 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n  117 (158)
                      .|.+.+..... .++..|||++||+|.+++.+++.|.+++++|+++.  +++.+++|+...
T Consensus       223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~--~~~~a~~r~~~~  280 (297)
T 2zig_A          223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPR--YAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHH--HHHHHHHHHHHh
Confidence            44454444322 46789999999999999999999999999999965  999999998764

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.20  E-value=1.5e-07  Score=75.10  Aligned_cols=101  Identities=10%  Similarity=0.055  Sum_probs=74.7

Q ss_pred             Eecch----HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEE
Q 031506           50 FVWPC----SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLM  125 (158)
Q Consensus        50 ~vW~~----~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~  125 (158)
                      ++|..    ...+..|+..-.. +.+..+||+=+|||.+|+.+.+.+.+++++|.++.  .++.+++|++.. -++++..
T Consensus        68 rl~~~~~~~p~~l~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~--a~~~L~~Nl~~~-~~~~V~~  143 (283)
T 2oo3_A           68 PVWLDRENLPSLFLEYISVIKQ-INLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPT--EYNFLLKLPHFN-KKVYVNH  143 (283)
T ss_dssp             HHHHTGGGSCGGGHHHHHHHHH-HSSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHH--HHHHHTTSCCTT-SCEEEEC
T ss_pred             HHHhcccCCcHHHHHHHHHHHH-hcCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHH--HHHHHHHHhCcC-CcEEEEe
Confidence            56762    2334455433222 45678999999999999988887779999999965  899999998752 3455655


Q ss_pred             cCC------------CCcEEEecCCCC-CccHHHHHHHHHHH
Q 031506          126 TSL------------PPSHICSRVLQD-QSSLRLIIIEVGII  154 (158)
Q Consensus       126 ~d~------------~fD~Ii~d~iy~-~~~~~~ll~tl~~l  154 (158)
                      .|.            +||+|+.||+|. ...++.+++.+...
T Consensus       144 ~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~  185 (283)
T 2oo3_A          144 TDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNA  185 (283)
T ss_dssp             SCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHH
T ss_pred             CcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHh
Confidence            542            599999999999 46888888877653

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.20  E-value=3.6e-06  Score=68.76  Aligned_cols=80  Identities=15%  Similarity=0.088  Sum_probs=58.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----CCcEEE-ecCCCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----PPSHIC-SRVLQDQ  141 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----~fD~Ii-~d~iy~~  141 (158)
                      +..+|||+|||+|..++.+++..  .+++++|+ +  ++++.++++     .++++...|.     .-|+|+ ..++++.
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~-----~~v~~~~~d~~~~~p~~D~v~~~~vlh~~  274 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-P--HVIQDAPAF-----SGVEHLGGDMFDGVPKGDAIFIKWICHDW  274 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHTTCCCC-----TTEEEEECCTTTCCCCCSEEEEESCGGGB
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-H--HHHHhhhhc-----CCCEEEecCCCCCCCCCCEEEEechhhcC
Confidence            45799999999999999888754  48999999 3  477765532     2355555443     239999 9999855


Q ss_pred             cc--HHHHHHHHHHHhcC
Q 031506          142 SS--LRLIIIEVGIILLS  157 (158)
Q Consensus       142 ~~--~~~ll~tl~~ll~~  157 (158)
                      ..  ...+++.++..|.+
T Consensus       275 ~~~~~~~~l~~~~~~L~p  292 (368)
T 3reo_A          275 SDEHCLKLLKNCYAALPD  292 (368)
T ss_dssp             CHHHHHHHHHHHHHHSCT
T ss_pred             CHHHHHHHHHHHHHHcCC
Confidence            44  45788888887765

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.18  E-value=3.7e-06  Score=61.72  Aligned_cols=50  Identities=20%  Similarity=0.067  Sum_probs=37.5

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C----------CEEEEEecCCh
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G----------SNVTLTDDSNR  103 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g----------~~v~~tD~~~~  103 (158)
                      ++..|.+.........++.+|||+|||+|..++.+++. +          .+|+++|+++.
T Consensus         6 ~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A            6 SAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             HHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            34455554444433446789999999999999988876 4          68999999973

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.15  E-value=4.9e-06  Score=74.72  Aligned_cols=70  Identities=11%  Similarity=-0.042  Sum_probs=52.5

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC-----CEEEEEecCChHHHHHHH--HHHHHHcCC----cc-eEEEcC---------C
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNM--RRVCEMNKL----NC-RLLMTS---------L  128 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g-----~~v~~tD~~~~~~~l~~~--~~n~~~n~~----~~-~~~~~d---------~  128 (158)
                      .+.+|||.|||||.+.+.+++..     .+++++|+++.  +++.+  +.|+..|.+    .. .+...|         .
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~--Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~  398 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETL--FLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA  398 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGG--GHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHH--HHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence            57799999999999999887653     37999999986  88887  777766432    21 333221         2


Q ss_pred             CCcEEEecCCCCC
Q 031506          129 PPSHICSRVLQDQ  141 (158)
Q Consensus       129 ~fD~Ii~d~iy~~  141 (158)
                      +||+|+++|+|..
T Consensus       399 kFDVVIgNPPYg~  411 (878)
T 3s1s_A          399 NVSVVVMNPPYVS  411 (878)
T ss_dssp             TEEEEEECCBCCS
T ss_pred             CCCEEEECCCccc
Confidence            7999999999953

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.13  E-value=6.6e-06  Score=67.14  Aligned_cols=80  Identities=13%  Similarity=0.046  Sum_probs=58.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----CCcEEE-ecCCCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----PPSHIC-SRVLQDQ  141 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----~fD~Ii-~d~iy~~  141 (158)
                      ...+|||+|||+|..+..+++..  .+++++|+ +  ++++.++++     .++++...|.     .-|+|+ ..++++.
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~-----~~v~~~~~D~~~~~p~~D~v~~~~vlh~~  272 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-P--HVISEAPQF-----PGVTHVGGDMFKEVPSGDTILMKWILHDW  272 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHTTCCCC-----TTEEEEECCTTTCCCCCSEEEEESCGGGS
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-H--HHHHhhhhc-----CCeEEEeCCcCCCCCCCCEEEehHHhccC
Confidence            45799999999999999887753  48999999 3  477765532     2355555543     239999 9999865


Q ss_pred             --ccHHHHHHHHHHHhcC
Q 031506          142 --SSLRLIIIEVGIILLS  157 (158)
Q Consensus       142 --~~~~~ll~tl~~ll~~  157 (158)
                        +....+++.++..|.+
T Consensus       273 ~d~~~~~~L~~~~~~L~p  290 (364)
T 3p9c_A          273 SDQHCATLLKNCYDALPA  290 (364)
T ss_dssp             CHHHHHHHHHHHHHHSCT
T ss_pred             CHHHHHHHHHHHHHHcCC
Confidence              4456888888887765

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.98  E-value=2.1e-05  Score=59.70  Aligned_cols=46  Identities=22%  Similarity=0.272  Sum_probs=39.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL  119 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~  119 (158)
                      +.++|||+||  |..++.+|+. +.+|+.+|.++.  ..+.+++|++.+++
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~--~~~~ar~~l~~~g~   76 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRA--WARMMKAWLAANPP   76 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHH--HHHHHHHHHHHSCC
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHH--HHHHHHHHHHHcCC
Confidence            4569999998  5788888876 679999999964  89999999999886

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.95  E-value=2.3e-05  Score=62.25  Aligned_cols=86  Identities=14%  Similarity=0.057  Sum_probs=60.0

Q ss_pred             CCeEEEeccCC---CHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcC-CcceEEEcCC--------------CC
Q 031506           71 GANVVELGAGT---SLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRLLMTSL--------------PP  130 (158)
Q Consensus        71 ~~~vLELG~Gt---Gl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~~d~--------------~f  130 (158)
                      ..++||||||+   |.+..++.+.  +++|+++|.++.  |++.+++++..+. .++.+...|.              .|
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~--mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~  156 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPI--VLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL  156 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHH--HHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChH--HHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence            36899999997   4455444443  569999999965  9999998886543 1345554443              25


Q ss_pred             c-----EEE-ecCCCCCccH---HHHHHHHHHHhcCC
Q 031506          131 S-----HIC-SRVLQDQSSL---RLIIIEVGIILLSS  158 (158)
Q Consensus       131 D-----~Ii-~d~iy~~~~~---~~ll~tl~~ll~~~  158 (158)
                      |     .|+ +-++++....   ..+++.+...|.++
T Consensus       157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PG  193 (277)
T 3giw_A          157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSG  193 (277)
T ss_dssp             CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTT
T ss_pred             CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCC
Confidence            5     466 8888887774   57888888777653

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.92  E-value=2.3e-05  Score=61.14  Aligned_cols=61  Identities=18%  Similarity=0.145  Sum_probs=48.2

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL  119 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~  119 (158)
                      ..|.+.+.+.. ..++..|||..||+|..++++.+.|.+++++|+++.  +++.+++|++.+++
T Consensus       199 ~~l~~~~i~~~-~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~--~~~~~~~r~~~~~~  259 (260)
T 1g60_A          199 RDLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAE--YVNQANFVLNQLEI  259 (260)
T ss_dssp             HHHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHC---
T ss_pred             HHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHH--HHHHHHHHHHhccC
Confidence            45555555432 246789999999999999999999999999999965  99999999987764

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.80  E-value=2.8e-05  Score=68.92  Aligned_cols=83  Identities=12%  Similarity=0.122  Sum_probs=53.5

Q ss_pred             CCeEEEeccCCCHHHHH---Hhh-cC-----------CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc-------
Q 031506           71 GANVVELGAGTSLPGLV---AAK-VG-----------SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT-------  126 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~---~a~-~g-----------~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~-------  126 (158)
                      ++.|||+|||+|.++..   +++ .+           .+|+|+|-++.  ++..++.... |+..  +.+...       
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~--A~~~l~~~~~-Ng~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPN--AIVTLKYMNV-RTWKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHH--HHHHHHHHHH-HTTTTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChH--HHHHHHHHHh-cCCCCeEEEEeCchhhccc
Confidence            45899999999999743   332 22           29999999963  4444444333 6654  444432       


Q ss_pred             ------CCCCcEEEecCCCCC---ccHHHHHHHHHHHhc
Q 031506          127 ------SLPPSHICSRVLQDQ---SSLRLIIIEVGIILL  156 (158)
Q Consensus       127 ------d~~fD~Ii~d~iy~~---~~~~~ll~tl~~ll~  156 (158)
                            ..+.|+||++.+-+.   +..++++..+...|+
T Consensus       487 p~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lk  525 (745)
T 3ua3_A          487 IAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLK  525 (745)
T ss_dssp             HHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSC
T ss_pred             ccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCC
Confidence                  138999998888443   455677776655544

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.80  E-value=6.8e-05  Score=59.84  Aligned_cols=86  Identities=13%  Similarity=0.081  Sum_probs=52.8

Q ss_pred             HHHHHHH-hcccCCCCCeEEEeccCC------CHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceE-EEc
Q 031506           57 ILAEYVW-QQRYRFSGANVVELGAGT------SLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL-LMT  126 (158)
Q Consensus        57 ~la~~l~-~~~~~~~~~~vLELG~Gt------Gl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~-~~~  126 (158)
                      .+++|+. ......++.+|||||||+      |. .+++...+  .+|+++|+++.   +         .  .+.+ ...
T Consensus        49 ~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~---v---------~--~v~~~i~g  113 (290)
T 2xyq_A           49 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF---V---------S--DADSTLIG  113 (290)
T ss_dssp             HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC---B---------C--SSSEEEES
T ss_pred             HHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC---C---------C--CCEEEEEC
Confidence            3666663 222334678999999954      66 33433443  69999999984   1         1  2344 444


Q ss_pred             CC-------CCcEEEecCCCC------------CccHHHHHHHHHHHhcC
Q 031506          127 SL-------PPSHICSRVLQD------------QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       127 d~-------~fD~Ii~d~iy~------------~~~~~~ll~tl~~ll~~  157 (158)
                      |.       +||+|++|+...            ....+.+++.+...|.+
T Consensus       114 D~~~~~~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp  163 (290)
T 2xyq_A          114 DCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLAL  163 (290)
T ss_dssp             CGGGCCCSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEE
T ss_pred             ccccCCccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCC
Confidence            32       699999765322            12345777877777654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.69  E-value=1.1e-05  Score=58.56  Aligned_cols=70  Identities=13%  Similarity=0.065  Sum_probs=53.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-----------CCCCcEEE-ec
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-----------SLPPSHIC-SR  136 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-----------d~~fD~Ii-~d  136 (158)
                      .++.+|||+|||+             | .+|+++.  |++.++++...+   +++...           +.+||+|+ +.
T Consensus        11 ~~g~~vL~~~~g~-------------v-~vD~s~~--ml~~a~~~~~~~---~~~~~~d~~~~~~~~~~~~~fD~V~~~~   71 (176)
T 2ld4_A           11 SAGQFVAVVWDKS-------------S-PVEALKG--LVDKLQALTGNE---GRVSVENIKQLLQSAHKESSFDIILSGL   71 (176)
T ss_dssp             CTTSEEEEEECTT-------------S-CHHHHHH--HHHHHHHHTTTT---SEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred             CCCCEEEEecCCc-------------e-eeeCCHH--HHHHHHHhcccC---cEEEEechhcCccccCCCCCEeEEEECC
Confidence            3678999999996             2 3888854  999998876432   333222           23699999 89


Q ss_pred             CCCCC-ccHHHHHHHHHHHhcC
Q 031506          137 VLQDQ-SSLRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~-~~~~~ll~tl~~ll~~  157 (158)
                      ++++. ++...+++.++.+|.+
T Consensus        72 ~l~~~~~~~~~~l~~~~r~Lkp   93 (176)
T 2ld4_A           72 VPGSTTLHSAEILAEIARILRP   93 (176)
T ss_dssp             STTCCCCCCHHHHHHHHHHEEE
T ss_pred             hhhhcccCHHHHHHHHHHHCCC
Confidence            99888 8889999999998875

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.60  E-value=0.00012  Score=60.33  Aligned_cols=75  Identities=13%  Similarity=0.074  Sum_probs=53.8

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEEecCCC
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHICSRVLQ  139 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii~d~iy  139 (158)
                      ..+|.+||||||.+|-.+-.++++|..|+++|..+   |-..+.    .+ -.+.+...|        .+||+|+||..-
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~---l~~~l~----~~-~~V~~~~~d~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP---MAQSLM----DT-GQVTWLREDGFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC---CCHHHH----TT-TCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh---cChhhc----cC-CCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence            34788999999999999999999999999999886   222221    11 123333332        279999999988


Q ss_pred             CCccHHHHHHH
Q 031506          140 DQSSLRLIIIE  150 (158)
Q Consensus       140 ~~~~~~~ll~t  150 (158)
                      ++.....++..
T Consensus       281 ~p~~~~~l~~~  291 (375)
T 4auk_A          281 KPAKVAALMAQ  291 (375)
T ss_dssp             CHHHHHHHHHH
T ss_pred             ChHHhHHHHHH
Confidence            77666555544

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.59  E-value=0.00023  Score=61.14  Aligned_cols=84  Identities=11%  Similarity=-0.052  Sum_probs=59.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---------------CCEEEEEecCChHHHHHHHHHHHHHcCCc-
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---------------GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-  120 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---------------g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-  120 (158)
                      .++++|.+......+.+|+|-.||||.+-+.+.+.               ...+++.|+++.  +...++.|+-..+.. 
T Consensus       204 ~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~--~~~la~mNl~lhg~~~  281 (530)
T 3ufb_A          204 PVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSL--PYLLVQMNLLLHGLEY  281 (530)
T ss_dssp             HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHH--HHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHH--HHHHHHHHHHhcCCcc
Confidence            34455544333446779999999999887765432               236999999965  889999999988764 


Q ss_pred             ceEEEcC------------CCCcEEEecCCCCCc
Q 031506          121 CRLLMTS------------LPPSHICSRVLQDQS  142 (158)
Q Consensus       121 ~~~~~~d------------~~fD~Ii~d~iy~~~  142 (158)
                      ..+...|            .+||+|+++|+|...
T Consensus       282 ~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~  315 (530)
T 3ufb_A          282 PRIDPENSLRFPLREMGDKDRVDVILTNPPFGGE  315 (530)
T ss_dssp             CEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCB
T ss_pred             ccccccccccCchhhhcccccceEEEecCCCCcc
Confidence            2333221            179999999999643

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.45  E-value=0.00019  Score=57.15  Aligned_cols=68  Identities=10%  Similarity=0.021  Sum_probs=51.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------------CCCcEEEe
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------------LPPSHICS  135 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------------~~fD~Ii~  135 (158)
                      .++..+||.+||.|..+..+++++.+|+++|.++.  +++.+++ ++.  -++.+...+             .++|.|++
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~--Ai~~A~~-L~~--~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~   95 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPE--AVARAKG-LHL--PGLTVVQGNFRHLKRHLAALGVERVDGILA   95 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHH-TCC--TTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHH--HHHHHHh-hcc--CCEEEEECCcchHHHHHHHcCCCCcCEEEe
Confidence            35779999999999999988887789999999965  9998887 543  234443331             16899998


Q ss_pred             cCCCCC
Q 031506          136 RVLQDQ  141 (158)
Q Consensus       136 d~iy~~  141 (158)
                      |.-+..
T Consensus        96 DLGvSS  101 (285)
T 1wg8_A           96 DLGVSS  101 (285)
T ss_dssp             ECSCCH
T ss_pred             CCcccc
Confidence            775543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.36  E-value=0.00075  Score=55.32  Aligned_cols=83  Identities=14%  Similarity=0.078  Sum_probs=61.0

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCC-------cceE
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-------NCRL  123 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~-------~~~~  123 (158)
                      .++...+..+.    ..+|.+|||++||.|.=+..++..+.  .|++.|+++.  -++.+++|++..+.       .+.+
T Consensus       135 ~aS~l~~~~L~----~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~--R~~~l~~~l~r~~~~~~~~~~~v~v  208 (359)
T 4fzv_A          135 AASLLPVLALG----LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPS--RIARLQKILHSYVPEEIRDGNQVRV  208 (359)
T ss_dssp             GGGHHHHHHHC----CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHH--HHHHHHHHHHHHSCTTTTTSSSEEE
T ss_pred             HHHHHHHHHhC----CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHH--HHHHHHHHHHHhhhhhhccCCceEE
Confidence            56666555442    23577999999999998887777765  7999999975  78889999987654       2444


Q ss_pred             EEcCC---------CCcEEEecCCCCC
Q 031506          124 LMTSL---------PPSHICSRVLQDQ  141 (158)
Q Consensus       124 ~~~d~---------~fD~Ii~d~iy~~  141 (158)
                      ...|.         .||.|+.|++...
T Consensus       209 ~~~D~~~~~~~~~~~fD~VLlDaPCSg  235 (359)
T 4fzv_A          209 TSWDGRKWGELEGDTYDRVLVDVPCTT  235 (359)
T ss_dssp             ECCCGGGHHHHSTTCEEEEEEECCCCC
T ss_pred             EeCchhhcchhccccCCEEEECCccCC
Confidence            44432         7999997776543

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.09  E-value=0.0012  Score=54.02  Aligned_cols=43  Identities=12%  Similarity=0.167  Sum_probs=36.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHH
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVC  114 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~  114 (158)
                      ++..|||+|.|.|.++..++..  +.+|++++++..  ++..+++..
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~--l~~~L~~~~  102 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSS--LYKFLNAKF  102 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHH--HHHHHHHHT
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHH--HHHHHHHhc
Confidence            3578999999999999988865  569999999975  888887765

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.06  E-value=0.001  Score=51.98  Aligned_cols=88  Identities=11%  Similarity=-0.038  Sum_probs=53.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc-------C-------CEEEEEecCCh-HHHHH-----------HHHHHHHHc------
Q 031506           70 SGANVVELGAGTSLPGLVAAKV-------G-------SNVTLTDDSNR-IEVLK-----------NMRRVCEMN------  117 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~-------g-------~~v~~tD~~~~-~~~l~-----------~~~~n~~~n------  117 (158)
                      +..+|||+|+|+|+..+.+++.       +       .+++.+|..+. .+.+.           .++.+++.-      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4468999999999998875442       1       38999998861 12333           455665531      


Q ss_pred             -------C--CcceEEEcC-------C------CCcEEEecCCCC--Ccc--HHHHHHHHHHHhcC
Q 031506          118 -------K--LNCRLLMTS-------L------PPSHICSRVLQD--QSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       118 -------~--~~~~~~~~d-------~------~fD~Ii~d~iy~--~~~--~~~ll~tl~~ll~~  157 (158)
                             .  ..++++..|       +      +||+|+.|+.-.  .+.  .+++++.+..+|.+
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p  205 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP  205 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC
Confidence                   0  122333332       1      699999886321  112  46678888777654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.93  E-value=0.0013  Score=53.14  Aligned_cols=67  Identities=12%  Similarity=0.087  Sum_probs=48.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc---CC-CCcEEE-ecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT---SL-PPSHIC-SRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~---d~-~fD~Ii-~d~i  138 (158)
                      ..+.+++||.||+|.+++.+.+.|. .|.++|+++.  +++..+.|..... ..++...   +. .+|+|+ ..|+
T Consensus         9 ~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~--a~~t~~~N~~~~~-~~Di~~~~~~~~~~~D~l~~gpPC   81 (327)
T 2c7p_A            9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKY--AQEVYEMNFGEKP-EGDITQVNEKTIPDHDILCAGFPC   81 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHH--HHHHHHHHHSCCC-BSCGGGSCGGGSCCCSEEEEECCC
T ss_pred             cCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHH--HHHHHHHHcCCCC-cCCHHHcCHhhCCCCCEEEECCCC
Confidence            3567899999999999999999998 5888999965  8888888874322 1111111   11 699999 5444

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.80  E-value=0.0043  Score=49.55  Aligned_cols=66  Identities=15%  Similarity=0.137  Sum_probs=49.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHH-c-----CCcceEEEcCC---------CCcE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM-N-----KLNCRLLMTSL---------PPSH  132 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~-n-----~~~~~~~~~d~---------~fD~  132 (158)
                      +.++||=+|.|.|.+...+.+..  .+|+++|+++.  +++.+++-+.. +     .-++++...|.         +||+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~--Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAG--VVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHH--HHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHH--HHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            56799999999999998777753  48999999964  99988876532 2     23455555543         8999


Q ss_pred             EEecC
Q 031506          133 ICSRV  137 (158)
Q Consensus       133 Ii~d~  137 (158)
                      ||.|+
T Consensus       161 Ii~D~  165 (294)
T 3o4f_A          161 IISDC  165 (294)
T ss_dssp             EEESC
T ss_pred             EEEeC
Confidence            99443

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.49  E-value=0.0016  Score=52.80  Aligned_cols=65  Identities=14%  Similarity=-0.031  Sum_probs=46.3

Q ss_pred             CeEEEeccCCCHHHHHHhhcC--C-EEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcC------CCCcEEEecCC
Q 031506           72 ANVVELGAGTSLPGLVAAKVG--S-NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTS------LPPSHICSRVL  138 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~g--~-~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d------~~fD~Ii~d~i  138 (158)
                      .+|+||.||+|.+++.+.+.|  . .|.++|+++.  +++..+.|...... ..++...+      ..+|+|+.+|+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~--a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpP   77 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTV--ANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPP   77 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHH--HHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHH--HHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCC
Confidence            479999999999999999988  4 6999999965  88888888653211 11111111      16999995555

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.42  E-value=0.0058  Score=48.35  Aligned_cols=56  Identities=20%  Similarity=0.074  Sum_probs=44.3

Q ss_pred             CCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CC-EEEEEecCC
Q 031506           46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSN  102 (158)
Q Consensus        46 ~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~-~v~~tD~~~  102 (158)
                      .+|..+=.++..|.+...+ ....++.+|||||||+|-.+..+++. +. .|.+.|+..
T Consensus        51 ~~~~YrSRaA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv  108 (277)
T 3evf_A           51 DTGVAVSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR  108 (277)
T ss_dssp             SSCBCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             cCCCccccHHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEec
Confidence            3566777899999998888 44446679999999999999987765 44 788888874

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.15  E-value=0.027  Score=44.57  Aligned_cols=68  Identities=15%  Similarity=0.053  Sum_probs=46.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc-------CCEEEEEecCCh------------------------HHHHHHHHHHHHHcC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV-------GSNVTLTDDSNR------------------------IEVLKNMRRVCEMNK  118 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~-------g~~v~~tD~~~~------------------------~~~l~~~~~n~~~n~  118 (158)
                      ...+|||+|+..|..++.++..       +.+|++.|..+.                        ...++.+++|++..+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            4568999999999999876542       558999996421                        013567899999887


Q ss_pred             Cc---ceEEEc----------CCCCcEEEecC
Q 031506          119 LN---CRLLMT----------SLPPSHICSRV  137 (158)
Q Consensus       119 ~~---~~~~~~----------d~~fD~Ii~d~  137 (158)
                      +.   +++...          +.+||+|..|+
T Consensus       186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDa  217 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG  217 (282)
T ss_dssp             CCSTTEEEEESCHHHHSTTCCCCCEEEEEECC
T ss_pred             CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC
Confidence            63   444432          12799999444

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=95.80  E-value=0.013  Score=47.00  Aligned_cols=57  Identities=18%  Similarity=0.028  Sum_probs=44.7

Q ss_pred             CCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHh-hcCC-EEEEEecCCh
Q 031506           46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA-KVGS-NVTLTDDSNR  103 (158)
Q Consensus        46 ~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a-~~g~-~v~~tD~~~~  103 (158)
                      .+|..+=.++..|.+...+. ....+.+||||||++|-.+..++ +.|+ .|.++|+...
T Consensus        71 ~~g~y~SR~~~KL~ei~~~~-~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~  129 (321)
T 3lkz_A           71 TGGHPVSRGTAKLRWLVERR-FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGP  129 (321)
T ss_dssp             SSCCCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCST
T ss_pred             cCCCccchHHHHHHHHHHhc-CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCC
Confidence            45777778899999877773 33466799999999999999554 5566 7999999863

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=95.73  E-value=0.022  Score=45.19  Aligned_cols=54  Identities=24%  Similarity=0.073  Sum_probs=43.7

Q ss_pred             ceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhh-cCC-EEEEEecCC
Q 031506           48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSN  102 (158)
Q Consensus        48 g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~-~g~-~v~~tD~~~  102 (158)
                      |..+=.++..|.+...+. ...++.+|||||||.|-.+..+++ .++ .|.++|+..
T Consensus        69 g~YrSRAAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~  124 (282)
T 3gcz_A           69 GIAVSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGV  124 (282)
T ss_dssp             SBCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             CCEecHHHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEecc
Confidence            566678999999988876 444677999999999999998775 454 788999975

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.72  E-value=0.025  Score=46.77  Aligned_cols=45  Identities=13%  Similarity=0.099  Sum_probs=38.6

Q ss_pred             CCCeEEEeccCCCHHHHHHh-hcC---CEEEEEecCChHHHHHHHHHHHHH
Q 031506           70 SGANVVELGAGTSLPGLVAA-KVG---SNVTLTDDSNRIEVLKNMRRVCEM  116 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a-~~g---~~v~~tD~~~~~~~l~~~~~n~~~  116 (158)
                      ++..++|+||+.|..++.++ +.+   .+|++.+-++.  ..+.+++|++.
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~--~~~~L~~n~~~  274 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRI--NLQTLQNVLRR  274 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHH--HHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHH--HHHHHHHHHHh
Confidence            56789999999999999776 443   58999999864  99999999998

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.55  E-value=0.015  Score=46.54  Aligned_cols=60  Identities=17%  Similarity=0.096  Sum_probs=46.5

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK  118 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~  118 (158)
                      ..|.+.+.+.. ..++..|||--||+|..++++.+.|.+.+++|+++.  .++.+++++...+
T Consensus       239 ~~l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~--~~~~~~~r~~~~~  298 (323)
T 1boo_A          239 AKLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPE--YVAASAFRFLDNN  298 (323)
T ss_dssp             THHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHH--HHHHHHGGGSCSC
T ss_pred             HHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHH--HHHHHHHHHHhcc
Confidence            34444444322 246779999999999999999999999999999975  8888888776544

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.51  E-value=0.03  Score=44.86  Aligned_cols=62  Identities=18%  Similarity=0.203  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCC---hHHHHHHHHHHHHHcC
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN---RIEVLKNMRRVCEMNK  118 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~---~~~~l~~~~~n~~~n~  118 (158)
                      -...|.+++.... ..++..|||--||+|..++++.+.|.+.+++|+++   .  .++.+++++...+
T Consensus       227 kp~~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~--~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          227 KPAAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKE--YYQKQLTFLQDDG  291 (319)
T ss_dssp             CCHHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHH--HHHHHHHHC----
T ss_pred             CCHHHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHH--HHHHHHHHHHHcc
Confidence            4456666666533 24677999999999999999999999999999997   5  7888888876544

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=95.33  E-value=0.032  Score=43.49  Aligned_cols=55  Identities=18%  Similarity=0.058  Sum_probs=43.3

Q ss_pred             ceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHh-hcCC-EEEEEecCCh
Q 031506           48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA-KVGS-NVTLTDDSNR  103 (158)
Q Consensus        48 g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a-~~g~-~v~~tD~~~~  103 (158)
                      |..+=.++..|.+...+. ...++.+||||||++|-.+..++ +.|+ +|+++|+...
T Consensus        57 g~yrSRa~~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~  113 (267)
T 3p8z_A           57 HHAVSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGP  113 (267)
T ss_dssp             SCCSSTHHHHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCST
T ss_pred             CCccchHHHHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCC
Confidence            555667888888877776 44567799999999999999554 4565 7999999863

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=95.25  E-value=0.042  Score=43.85  Aligned_cols=55  Identities=18%  Similarity=0.019  Sum_probs=45.2

Q ss_pred             CceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CC-EEEEEecCC
Q 031506           47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSN  102 (158)
Q Consensus        47 ~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~-~v~~tD~~~  102 (158)
                      +|...=.++..|.+...+ ....++.+||||||++|-.+-.+++. +. .|.++|+..
T Consensus        59 ~g~yrSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~  115 (300)
T 3eld_A           59 VGISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI  115 (300)
T ss_dssp             SCCCSSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             CCCccchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecc
Confidence            466666789999998888 55557889999999999999988874 54 788999974

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=95.15  E-value=0.026  Score=46.55  Aligned_cols=43  Identities=21%  Similarity=0.264  Sum_probs=36.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHH
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC  114 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~  114 (158)
                      +.++||=+|.|.|.+...+.+... +|+++|+++.  +++.+++-.
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~--VVe~ar~yf  248 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQM--VIDGCKKYM  248 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHH--HHHHHHHHC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHH--HHHHHHhhc
Confidence            568999999999999987777544 8999999964  999888764

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=94.87  E-value=0.035  Score=45.51  Aligned_cols=42  Identities=19%  Similarity=0.163  Sum_probs=35.8

Q ss_pred             CeEEEeccCCCHHHHHHhhcCCE-EEEEecCChHHHHHHHHHHHH
Q 031506           72 ANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCE  115 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~g~~-v~~tD~~~~~~~l~~~~~n~~  115 (158)
                      .+++||-||+|.+++.+.+.|.+ |.++|+++.  +++..+.|..
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~--a~~t~~~N~~   45 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQH--AINTHAINFP   45 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHH--HHHHHHHHCT
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHH--HHHHHHHhCC
Confidence            47999999999999999999984 679999965  7887887754

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=94.56  E-value=0.022  Score=45.14  Aligned_cols=60  Identities=17%  Similarity=0.143  Sum_probs=44.7

Q ss_pred             eEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC---------CCcEEE-ecCCC
Q 031506           73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL---------PPSHIC-SRVLQ  139 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~---------~fD~Ii-~d~iy  139 (158)
                      +||||-||.|.+++.+.+.|. -|.++|+++.  +.+..+.|..     ..+...|.         ..|+|+ .-|+.
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~--a~~ty~~N~~-----~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ   72 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKS--IWKTYESNHS-----AKLIKGDISKISSDEFPKCDGIIGGPPSQ   72 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTT--THHHHHHHCC-----SEEEESCGGGCCGGGSCCCSEEECCCCGG
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHH--HHHHHHHHCC-----CCcccCChhhCCHhhCCcccEEEecCCCC
Confidence            799999999999999999998 5779999986  7777777643     12222221         789999 66653

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.45  E-value=0.038  Score=44.49  Aligned_cols=68  Identities=16%  Similarity=-0.063  Sum_probs=46.4

Q ss_pred             CCeEEEeccCCCHHHHHHhhcCC---EE-EEEecCChHHHHHHHHHHHHHcCCcceEEEcC------CCCcEEE-ecCCC
Q 031506           71 GANVVELGAGTSLPGLVAAKVGS---NV-TLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS------LPPSHIC-SRVLQ  139 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g~---~v-~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d------~~fD~Ii-~d~iy  139 (158)
                      ..+++||.||.|.+++.+.+.|.   .| .++|+++.  +.+..+.|....-...++...+      ..+|+|+ +-|+.
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~--a~~ty~~N~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ   87 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEI--ANKIYSKNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQ   87 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHH--HHHHHHHHHCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHH--HHHHHHHHCCCCcccCChhhcCHHHhccCCCCEEEecCCcc
Confidence            34899999999999999998883   45 69999975  7888888864321111111111      2689999 55543


Q ss_pred             C
Q 031506          140 D  140 (158)
Q Consensus       140 ~  140 (158)
                      .
T Consensus        88 ~   88 (327)
T 3qv2_A           88 P   88 (327)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=93.89  E-value=0.11  Score=42.57  Aligned_cols=73  Identities=10%  Similarity=-0.014  Sum_probs=44.9

Q ss_pred             CCeEEEeccCCCHHHHHH--------hhc---------CCEEEEEecCChHHHHHHHHHHHHHcC--------------C
Q 031506           71 GANVVELGAGTSLPGLVA--------AKV---------GSNVTLTDDSNRIEVLKNMRRVCEMNK--------------L  119 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~--------a~~---------g~~v~~tD~~~~~~~l~~~~~n~~~n~--------------~  119 (158)
                      .-+|+|||||+|-.++.+        .+.         ..+|+..|+...  ....+=+++....              -
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~N--DFn~lF~~L~~~~~~~~~~~~~~~~~~~  130 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSN--DFNTLFQLLPPLVSNTCMEECLAADGNR  130 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTS--CHHHHHHHSCCBCCCC--CCC---CCCB
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCcc--chHHHHhhhhhhhhhcchhhhccccCCC
Confidence            468999999999888865        111         138999999875  3333323332210              0


Q ss_pred             cceEEEc----------CCCCcEEE-ecCCCCCccHH
Q 031506          120 NCRLLMT----------SLPPSHIC-SRVLQDQSSLR  145 (158)
Q Consensus       120 ~~~~~~~----------d~~fD~Ii-~d~iy~~~~~~  145 (158)
                      .+.+.+.          +..||+|+ +-++++.+..+
T Consensus       131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p  167 (374)
T 3b5i_A          131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVP  167 (374)
T ss_dssp             CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCC
T ss_pred             ceEEEecChhhhcccCCCcceEEEEecceeeeeccCc
Confidence            1222222          33899999 98988876433

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=93.74  E-value=0.2  Score=40.25  Aligned_cols=47  Identities=23%  Similarity=0.321  Sum_probs=27.6

Q ss_pred             HHHHHHHhcc-cCCCCCeEEEeccCCC---HHH-HHHhh---cCCEEEEEecCCh
Q 031506           57 ILAEYVWQQR-YRFSGANVVELGAGTS---LPG-LVAAK---VGSNVTLTDDSNR  103 (158)
Q Consensus        57 ~la~~l~~~~-~~~~~~~vLELG~GtG---l~~-i~~a~---~g~~v~~tD~~~~  103 (158)
                      .|+.|+.... .-..+.+|||||||+-   .+| ..+.+   .|+.|+++|+.+-
T Consensus        95 qlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~  149 (344)
T 3r24_A           95 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF  149 (344)
T ss_dssp             HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC
T ss_pred             HHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccc
Confidence            4566663321 2236789999998321   122 23333   3458999999983

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=93.60  E-value=0.082  Score=43.59  Aligned_cols=75  Identities=16%  Similarity=0.123  Sum_probs=44.5

Q ss_pred             CCeEEEeccCCCHHHHHHhhc--------------C-----CEEEEEecCCh-HH----HHHHHHHHHH-HcCC---cce
Q 031506           71 GANVVELGAGTSLPGLVAAKV--------------G-----SNVTLTDDSNR-IE----VLKNMRRVCE-MNKL---NCR  122 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~--------------g-----~~v~~tD~~~~-~~----~l~~~~~n~~-~n~~---~~~  122 (158)
                      .-+|+||||++|-.++.+...              +     .+|+..|+... -.    .+......+. .++.   .+.
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            468999999999888865433              1     27999999852 00    1222222221 1221   223


Q ss_pred             EEEc----------CCCCcEEE-ecCCCCCccHH
Q 031506          123 LLMT----------SLPPSHIC-SRVLQDQSSLR  145 (158)
Q Consensus       123 ~~~~----------d~~fD~Ii-~d~iy~~~~~~  145 (158)
                      +.+.          +..||+|+ +-++++....+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p  166 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVP  166 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSC
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCc
Confidence            3332          33899999 88888876654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=92.79  E-value=0.81  Score=37.15  Aligned_cols=100  Identities=18%  Similarity=0.183  Sum_probs=62.0

Q ss_pred             CCCceEecchHHHHHHHHHhcccC-CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcc--
Q 031506           45 EEYGLFVWPCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC--  121 (158)
Q Consensus        45 ~~~g~~vW~~~~~la~~l~~~~~~-~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~--  121 (158)
                      ....++-|+++-   +|+.++... ..+.+||-++.+-|.++..++..+. ...+| +-  -....++.|+..|++..  
T Consensus        15 ~~~~l~a~da~d---~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~~-~~~~d-s~--~~~~~~~~n~~~~~~~~~~   87 (375)
T 4dcm_A           15 DVNPLQAWEAAD---EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-YSIGD-SY--ISELATRENLRLNGIDESS   87 (375)
T ss_dssp             SSCSCCSCCHHH---HHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGGCC-EEEES-CH--HHHHHHHHHHHHTTCCGGG
T ss_pred             CCCCCCccchHH---HHHHHhhhhccCCCCEEEECCCCCHHHHhhccCCc-eEEEh-HH--HHHHHHHHHHHHcCCCccc
Confidence            346689999975   345544222 2456899999999999998876543 22345 32  24457899999999863  


Q ss_pred             -eEEEc----CCCCcEEEecCCCCCccHHHHHHHHHHH
Q 031506          122 -RLLMT----SLPPSHICSRVLQDQSSLRLIIIEVGII  154 (158)
Q Consensus       122 -~~~~~----d~~fD~Ii~d~iy~~~~~~~ll~tl~~l  154 (158)
                       +....    ...||+|+--+   +.....+...+..|
T Consensus        88 ~~~~~~~~~~~~~~~~v~~~l---pk~~~~l~~~L~~l  122 (375)
T 4dcm_A           88 VKFLDSTADYPQQPGVVLIKV---PKTLALLEQQLRAL  122 (375)
T ss_dssp             SEEEETTSCCCSSCSEEEEEC---CSCHHHHHHHHHHH
T ss_pred             eEecccccccccCCCEEEEEc---CCCHHHHHHHHHHH
Confidence             33322    12799888433   34444444444444

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=92.43  E-value=0.63  Score=35.88  Aligned_cols=65  Identities=14%  Similarity=0.067  Sum_probs=49.5

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC----------------
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL----------------  128 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~----------------  128 (158)
                      .+++|.+|==|++.|+   ++..+++.|++|+++|.++.  .++.+.+.++..+.++.+...|.                
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~--~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLED--RLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4678999999988885   34456778999999999864  67777777777776666666653                


Q ss_pred             --CCcEEE
Q 031506          129 --PPSHIC  134 (158)
Q Consensus       129 --~fD~Ii  134 (158)
                        +.|+++
T Consensus        82 ~G~iDiLV   89 (254)
T 4fn4_A           82 YSRIDVLC   89 (254)
T ss_dssp             HSCCCEEE
T ss_pred             cCCCCEEE
Confidence              799999

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=92.41  E-value=0.039  Score=55.13  Aligned_cols=85  Identities=15%  Similarity=0.041  Sum_probs=37.5

Q ss_pred             CCeEEEeccCCCHHHHH-HhhcC------CEEEEEecCChHHHHHHHHHHHHHcCCcceEEE-------cCCCCcEEE-e
Q 031506           71 GANVVELGAGTSLPGLV-AAKVG------SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLM-------TSLPPSHIC-S  135 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~-~a~~g------~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~-------~d~~fD~Ii-~  135 (158)
                      ..+|||+|+|||..... +...+      .+.+.||+++.  ..+.++++.+...+....+.       ....||+|+ +
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~--~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQ--ALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSS--STTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChH--HHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence            45899999999965432 22221      27899999975  55555555432211110000       122699999 9


Q ss_pred             cCCCCCccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ++++...+....++.+..+|.+
T Consensus      1319 ~vl~~t~~~~~~l~~~~~lL~p 1340 (2512)
T 2vz8_A         1319 CALATLGDPAVAVGNMAATLKE 1340 (2512)
T ss_dssp             CC--------------------
T ss_pred             ccccccccHHHHHHHHHHhcCC
Confidence            9998888888888888887764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=92.04  E-value=1.1  Score=33.99  Aligned_cols=77  Identities=19%  Similarity=0.157  Sum_probs=40.9

Q ss_pred             EecchHHHHHHHHHhcccCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT  126 (158)
Q Consensus        50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~  126 (158)
                      +.|-+.-...-|+....-.++++++|=-|++.|+   ++..+++.|++|++++.+.. +..+.++..++..+.++.+...
T Consensus         8 ~~~~~~~~~~~~~~~~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~   86 (271)
T 4iin_A            8 SSGVDLGTENLYFQSNAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNA-EVADALKNELEEKGYKAAVIKF   86 (271)
T ss_dssp             ----------------CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-HHHHHHHHHHHHTTCCEEEEEC
T ss_pred             ccccccCcceehhhhhhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhcCCceEEEEC
Confidence            3444433333344444445688899999987664   22345667999999999653 3556566666655555655555


Q ss_pred             C
Q 031506          127 S  127 (158)
Q Consensus       127 d  127 (158)
                      |
T Consensus        87 D   87 (271)
T 4iin_A           87 D   87 (271)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=91.89  E-value=0.19  Score=39.74  Aligned_cols=43  Identities=14%  Similarity=0.030  Sum_probs=35.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCE---EEEEecCChHHHHHHHHHHH
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSN---VTLTDDSNRIEVLKNMRRVC  114 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~---v~~tD~~~~~~~l~~~~~n~  114 (158)
                      .+.+++||-||.|.+++.+.+.|.+   |.++|+++.  +.+..+.|.
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~--a~~ty~~N~   60 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCED--SITVGMVRH   60 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHH--HHHHHHHHT
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHH--HHHHHHHhC
Confidence            4558999999999999999999874   589999965  777666664

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=91.63  E-value=0.28  Score=38.48  Aligned_cols=53  Identities=21%  Similarity=0.028  Sum_probs=39.7

Q ss_pred             CCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--C----CEEEEEe
Q 031506           46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--G----SNVTLTD   99 (158)
Q Consensus        46 ~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g----~~v~~tD   99 (158)
                      .+|...=.+++.|.+.-.+. ...++.+||||||+.|--+..++++  -    ..|++.|
T Consensus        50 ~~g~yRSRAayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D  108 (269)
T 2px2_A           50 VGGHPVSRGTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGP  108 (269)
T ss_dssp             CCSCCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCST
T ss_pred             cCCCcccHHHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccc
Confidence            34555667888898877764 4446889999999999999988876  1    2455666

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=91.35  E-value=0.61  Score=36.77  Aligned_cols=51  Identities=22%  Similarity=0.119  Sum_probs=35.1

Q ss_pred             HHHHHhcccCCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506           59 AEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      +.+........++.+||=.||| .|+.++.+++ .|++|+++|.++.  -++.++
T Consensus       155 a~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~--~~~~~~  207 (340)
T 3s2e_A          155 VYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDA--KLNLAR  207 (340)
T ss_dssp             HHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHH--HHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHH
Confidence            3444444445578899999998 5777775555 6889999999863  455443

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=90.54  E-value=0.31  Score=39.17  Aligned_cols=42  Identities=14%  Similarity=0.018  Sum_probs=34.6

Q ss_pred             CeEEEeccCCCHHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHH
Q 031506           72 ANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCE  115 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~~~~~l~~~~~n~~  115 (158)
                      .+++||-||.|.+++.+.+.|.   .|.++|+++.  +.+..+.|..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~--a~~ty~~N~~   48 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTV--ANSVYKHNFP   48 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHH--HHHHHHHHCT
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHH--HHHHHHHhCC
Confidence            3799999999999999888885   4789999965  7777777754

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=90.49  E-value=0.43  Score=38.70  Aligned_cols=42  Identities=26%  Similarity=0.320  Sum_probs=31.1

Q ss_pred             CCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        68 ~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ..++.+||-+||| .|+.++.+++ +|+ +|+++|.++.  -++.++
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~--~~~~a~  227 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPE--RLKLLS  227 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHH--HHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH--HHHHHH
Confidence            4478899999997 3777776555 688 9999999864  455443

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=90.41  E-value=0.7  Score=35.68  Aligned_cols=59  Identities=15%  Similarity=0.178  Sum_probs=41.8

Q ss_pred             cCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .+++++.+|=-|++.|+   ++..+++.|++|+++|.++.  .++...+.+...+.++.....|
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~--~~~~~~~~l~~~g~~~~~~~~D   66 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRAT--LLAESVDTLTRKGYDAHGVAFD   66 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHH--HHHHHHHHHHHTTCCEEECCCC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEee
Confidence            35789999999988774   34466788999999999864  6666666666666555444443

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=89.71  E-value=2.6  Score=31.83  Aligned_cols=58  Identities=17%  Similarity=0.179  Sum_probs=40.7

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|++++.+..  .++.+.+.+...+.++.+...|
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D   68 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVE--RLEDVAKQVTDTGRRALSVGTD   68 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEcC
Confidence            3578899999998774   23356678999999999853  5666666666555555555554

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=89.56  E-value=0.67  Score=38.75  Aligned_cols=49  Identities=29%  Similarity=0.226  Sum_probs=32.7

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHH----hhcC---CEEEEEecCCh
Q 031506           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVA----AKVG---SNVTLTDDSNR  103 (158)
Q Consensus        55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~----a~~g---~~v~~tD~~~~  103 (158)
                      +..++.|+.+........+|+|+|+|+|.+..-+    .+.+   .++++++.|+.
T Consensus       122 Ge~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~  177 (432)
T 4f3n_A          122 AQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGE  177 (432)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSS
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHH
Confidence            3566666655322222468999999999887732    2222   37999999985

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=89.45  E-value=4.9  Score=30.32  Aligned_cols=67  Identities=13%  Similarity=0.076  Sum_probs=43.7

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCC----------hHHHHHHHHHHHHHcCCcceEEEcCC------
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSN----------RIEVLKNMRRVCEMNKLNCRLLMTSL------  128 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~----------~~~~l~~~~~n~~~n~~~~~~~~~d~------  128 (158)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.+.          ..+.++...+.+...+.++.+...|.      
T Consensus        10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   89 (278)
T 3sx2_A           10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL   89 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence            4678899999987653   2334567799999999872          12345554444554455555555543      


Q ss_pred             ------------CCcEEE
Q 031506          129 ------------PPSHIC  134 (158)
Q Consensus       129 ------------~fD~Ii  134 (158)
                                  +.|+++
T Consensus        90 ~~~~~~~~~~~g~id~lv  107 (278)
T 3sx2_A           90 SAALQAGLDELGRLDIVV  107 (278)
T ss_dssp             HHHHHHHHHHHCCCCEEE
T ss_pred             HHHHHHHHHHcCCCCEEE
Confidence                        689999

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=89.22  E-value=0.87  Score=36.03  Aligned_cols=50  Identities=14%  Similarity=0.059  Sum_probs=33.6

Q ss_pred             HHHHhcccCCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506           60 EYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      .+........++.+||=.|+| .|+.++.+++ .|++|++++.++.  -++.++
T Consensus       166 ~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~--~~~~~~  217 (348)
T 3two_A          166 YSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEH--KKQDAL  217 (348)
T ss_dssp             HHHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSST--THHHHH
T ss_pred             HHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHH
Confidence            333333344578899999987 4666665554 6889999998875  445444

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=89.20  E-value=2.3  Score=32.71  Aligned_cols=66  Identities=18%  Similarity=0.220  Sum_probs=45.3

Q ss_pred             cccCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------------
Q 031506           65 QRYRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------------  128 (158)
Q Consensus        65 ~~~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------------  128 (158)
                      ++.+++++.+|==|++.|+   ++..+++.|++|+++|.+...+..    +.+...+.++.....|.             
T Consensus         3 n~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~----~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g   78 (247)
T 4hp8_A            3 NPFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETL----DIIAKDGGNASALLIDFADPLAAKDSFTDA   78 (247)
T ss_dssp             CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHH----HHHHHTTCCEEEEECCTTSTTTTTTSSTTT
T ss_pred             CCcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHH----HHHHHhCCcEEEEEccCCCHHHHHHHHHhC
Confidence            3556789999999998884   444677889999999998642333    33344555555554432             


Q ss_pred             CCcEEE
Q 031506          129 PPSHIC  134 (158)
Q Consensus       129 ~fD~Ii  134 (158)
                      ++|+.+
T Consensus        79 ~iDiLV   84 (247)
T 4hp8_A           79 GFDILV   84 (247)
T ss_dssp             CCCEEE
T ss_pred             CCCEEE
Confidence            689888

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=89.16  E-value=0.17  Score=41.29  Aligned_cols=73  Identities=18%  Similarity=0.140  Sum_probs=46.4

Q ss_pred             CCeEEEeccCCCHHHHHHhhc------------C------CEEEEEecCChHHHHHHHHHHHHHcC---CcceEEEc---
Q 031506           71 GANVVELGAGTSLPGLVAAKV------------G------SNVTLTDDSNRIEVLKNMRRVCEMNK---LNCRLLMT---  126 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~------------g------~~v~~tD~~~~~~~l~~~~~n~~~n~---~~~~~~~~---  126 (158)
                      .-+|+||||++|-.++.+...            +      .+|+..|+...  ....+-+++....   -.+.+.+.   
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~N--DFntlF~~L~~~~~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGN--DFNAIFRSLPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTS--CHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCch--HHHHHHHhcchhcccCCCEEEEecchh
Confidence            357999999999777754332            2      27999999976  5555555554211   11222222   


Q ss_pred             -------CCCCcEEE-ecCCCCCccHH
Q 031506          127 -------SLPPSHIC-SRVLQDQSSLR  145 (158)
Q Consensus       127 -------d~~fD~Ii-~d~iy~~~~~~  145 (158)
                             +..+|+|+ +-++++....+
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p  156 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVP  156 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCC
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCc
Confidence                   23899999 88887765533

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=89.05  E-value=5.9  Score=29.85  Aligned_cols=59  Identities=10%  Similarity=0.192  Sum_probs=39.8

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|++++.... +..+.+.+.+...+.++.+...|
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D   76 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANST-KDAEKVVSEIKALGSDAIAIKAD   76 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHhcCCcEEEEEcC
Confidence            4678899999987664   23345677999999988753 35555556666555555555554

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=88.52  E-value=2.5  Score=31.75  Aligned_cols=59  Identities=17%  Similarity=0.142  Sum_probs=39.8

Q ss_pred             cCCCCCeEEEeccCCCHH---HHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           67 YRFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~---~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ..++++++|=-|++.|+=   +..+++.|++|+++|.+..  .++.+.+.+...+.++.+...|
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D   69 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSE--GAEAVAAAIRQAGGKAIGLECN   69 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEECC
Confidence            356788999999876642   2345667999999999863  5666666665555555555554

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=88.32  E-value=2.7  Score=31.24  Aligned_cols=65  Identities=12%  Similarity=0.137  Sum_probs=44.3

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC----------------
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL----------------  128 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~----------------  128 (158)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.++.  .++.+.+.+...+..+.+...|.                
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAE--AAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE   83 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            3567889999977553   22345667999999999864  56666666655555555555543                


Q ss_pred             --CCcEEE
Q 031506          129 --PPSHIC  134 (158)
Q Consensus       129 --~fD~Ii  134 (158)
                        ++|+++
T Consensus        84 ~g~id~li   91 (253)
T 3qiv_A           84 FGGIDYLV   91 (253)
T ss_dssp             HSCCCEEE
T ss_pred             cCCCCEEE
Confidence              789999

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=88.25  E-value=2.6  Score=32.59  Aligned_cols=58  Identities=16%  Similarity=0.232  Sum_probs=39.9

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=.|++.|+   ++..+++.|++|++++.++.  .++.+.+.+...+..+.+...|
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D   88 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQP--ALEQAVNGLRGQGFDAHGVVCD   88 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCceEEEEcc
Confidence            4678899999988663   22345667999999999864  5666666666555555555554

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=88.17  E-value=2.7  Score=31.07  Aligned_cols=57  Identities=16%  Similarity=0.158  Sum_probs=37.7

Q ss_pred             CCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ++++++|=.|++.|+   ++..+++.|++|++++.++.  .++.+...++..+.++.+...|
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D   62 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQA--SAEKFENSMKEKGFKARGLVLN   62 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEec
Confidence            457788888876553   22345667999999999864  5565555565555555555554

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=88.13  E-value=1.1  Score=36.88  Aligned_cols=49  Identities=14%  Similarity=0.076  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhcc---cCCCCCeEEEeccCCCHHHHHHhh---------cCCEEEEEecCCh
Q 031506           55 SVILAEYVWQQR---YRFSGANVVELGAGTSLPGLVAAK---------VGSNVTLTDDSNR  103 (158)
Q Consensus        55 ~~~la~~l~~~~---~~~~~~~vLELG~GtGl~~i~~a~---------~g~~v~~tD~~~~  103 (158)
                      +..++.|+.+..   .....-+|+|+|+|+|.+..-+.+         ...+++++|.|+.
T Consensus        62 Ge~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~  122 (387)
T 1zkd_A           62 GELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV  122 (387)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHH
Confidence            455666665421   112334799999999998773321         1128999999974

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=87.99  E-value=1.2  Score=35.54  Aligned_cols=43  Identities=21%  Similarity=0.217  Sum_probs=31.0

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++.+||=+|+| .|+..+.+++ +|++|++++.++.  -++.++
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~--~~~~~~  220 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR--KREDAM  220 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST--THHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHH
Confidence            34478899999996 4666665554 6889999998864  445544

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=87.98  E-value=2.6  Score=32.17  Aligned_cols=66  Identities=15%  Similarity=0.155  Sum_probs=45.4

Q ss_pred             cCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC---------------
Q 031506           67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL---------------  128 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~---------------  128 (158)
                      ..++++++|=-|++.|+   ++..+++.|++|++++.++.  .++.+.+.+...+.++.+...|.               
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~  105 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSD--ALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTG  105 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGG--GGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            35678899999987663   22345667999999999864  55555555555555555555543               


Q ss_pred             ---CCcEEE
Q 031506          129 ---PPSHIC  134 (158)
Q Consensus       129 ---~fD~Ii  134 (158)
                         ++|+++
T Consensus       106 ~~g~iD~lv  114 (276)
T 3r1i_A          106 ELGGIDIAV  114 (276)
T ss_dssp             HHSCCSEEE
T ss_pred             HcCCCCEEE
Confidence               789999

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=87.89  E-value=0.6  Score=39.52  Aligned_cols=42  Identities=12%  Similarity=0.076  Sum_probs=35.1

Q ss_pred             CCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHH
Q 031506           71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC  114 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~  114 (158)
                      ..+++||-||.|.+++.+.+.|. .|.++|+++.  +.+..+.|.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~--A~~ty~~N~  130 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKH--AVRTYKANH  130 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHH--HHHHHHHHS
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHH--HHHHHHHhc
Confidence            35899999999999999988888 4889999964  777777765

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=87.88  E-value=0.57  Score=38.06  Aligned_cols=42  Identities=7%  Similarity=0.012  Sum_probs=34.3

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHH
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~  111 (158)
                      ..++..++|..||.|.-+..++++ +  .+|++.|.++.  +++.++
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~--Al~~A~   99 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQ--AIAVAK   99 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHH--HHHHHT
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHH
Confidence            346789999999999999977765 4  38999999964  888774

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=87.84  E-value=3.5  Score=30.92  Aligned_cols=58  Identities=21%  Similarity=0.195  Sum_probs=38.1

Q ss_pred             CCCCCeEEEecc-CCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC-CcceEEEcC
Q 031506           68 RFSGANVVELGA-GTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~-GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~~d  127 (158)
                      .++++++|=.|+ |.|+   ++..+++.|++|++++.+..  -++.+.+.+...+ .++.+...|
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~D   81 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHER--RLGETRDQLADLGLGRVEAVVCD   81 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHTTCSSCEEEEECC
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHH--HHHHHHHHHHhcCCCceEEEEeC
Confidence            357889999998 6775   33356778999999999864  4555555554332 345555554

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=87.78  E-value=2.6  Score=32.07  Aligned_cols=57  Identities=7%  Similarity=0.011  Sum_probs=37.8

Q ss_pred             CCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ..++++|=-|++.|+   ++..+++.|++|++++.++.  .++.+.+.+...+..+.+...|
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D   61 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQA--RIEAIATEIRDAGGTALAQVLD   61 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH--HHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEcC
Confidence            356788888887664   22345667999999999853  5666666666555555555554

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=87.75  E-value=2.8  Score=31.53  Aligned_cols=57  Identities=21%  Similarity=0.198  Sum_probs=39.0

Q ss_pred             CCCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ..+++++|=.|++.| +|.    .+++.|++|++++.++.  .++.+.+.+...+..+.+...|
T Consensus        26 ~l~~k~vlITGas~g-IG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D   86 (262)
T 3rkr_A           26 SLSGQVAVVTGASRG-IGAAIARKLGSLGARVVLTARDVE--KLRAVEREIVAAGGEAESHACD   86 (262)
T ss_dssp             TTTTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHHhCCceeEEEec
Confidence            457788999997655 444    34567999999999864  5666666666555555555554

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=87.73  E-value=1.2  Score=35.65  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=30.7

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++.+||-+|+| .|+.++.+++ .|++|++++.++.  -++.++
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~--~~~~a~  235 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA--KREAAK  235 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG--GHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHH
Confidence            34467899999987 4666665554 6889999998864  455444

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=87.70  E-value=5.5  Score=30.33  Aligned_cols=59  Identities=10%  Similarity=0.031  Sum_probs=38.7

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ...++++|=-|++.|+   ++..+++.|++|++++.... +.++.....+...+..+.+...|
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D   87 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDA-EGVAPVIAELSGLGARVIFLRAD   87 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCH-HHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCH-HHHHHHHHHHHhcCCcEEEEEec
Confidence            4567889999987664   23345677999999997542 35555555555555555555554

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=87.68  E-value=1.5  Score=34.95  Aligned_cols=44  Identities=27%  Similarity=0.311  Sum_probs=31.4

Q ss_pred             ccCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           66 RYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        66 ~~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ....++.+||-+||| .|+.++.+++ .|+ +|+++|.++.  -++.++
T Consensus       186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~--~~~~a~  232 (371)
T 1f8f_A          186 LKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES--RLELAK  232 (371)
T ss_dssp             TCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH--HHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH--HHHHHH
Confidence            344578899999987 3777775555 688 7999998864  455554

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=87.03  E-value=1.7  Score=34.32  Aligned_cols=49  Identities=20%  Similarity=0.125  Sum_probs=32.1

Q ss_pred             HHHhcccCCCCCeEEEecc--CCCHHHHHHh-hcCCEEEEEecCChHHHHHHHH
Q 031506           61 YVWQQRYRFSGANVVELGA--GTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        61 ~l~~~~~~~~~~~vLELG~--GtGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      +........++++||-.|+  |.|...+.++ ..|++|++++.++.  .++.++
T Consensus       160 ~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~--~~~~~~  211 (347)
T 2hcy_A          160 KALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG--KEELFR  211 (347)
T ss_dssp             HHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTT--HHHHHH
T ss_pred             HHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHH--HHHHHH
Confidence            3333334457889999998  3566555444 47889999998864  444443

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=87.03  E-value=1.8  Score=34.59  Aligned_cols=71  Identities=17%  Similarity=0.117  Sum_probs=41.1

Q ss_pred             EEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        37 ~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      +++.++.....+.  .......+.+........++.+||=.|+| .|+.++.+++ .|+ +|+++|.++.  -++.++
T Consensus       151 ~~~P~~~~~~~aa--l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~--~~~~a~  224 (370)
T 4ej6_A          151 FEIPLTLDPVHGA--FCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQAT--KRRLAE  224 (370)
T ss_dssp             EEECTTSCTTGGG--GHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHH--HHHHHH
T ss_pred             EECCCCCCHHHHh--hhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH--HHHHHH
Confidence            4444444333333  22333333333333344578899999987 4666665554 688 8999999864  455444

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=86.71  E-value=1.3  Score=34.36  Aligned_cols=53  Identities=13%  Similarity=0.013  Sum_probs=34.7

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ..-+.+........++.+||=.|+| .|+.++.+++ .|++|++++ ++.  -++.++
T Consensus       128 ~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~--~~~~~~  182 (315)
T 3goh_A          128 LLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASL--SQALAA  182 (315)
T ss_dssp             HHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSC--CHHHHH
T ss_pred             HHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-Chh--hHHHHH
Confidence            3344444443444578899999996 5677775554 688999999 653  344444

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=86.69  E-value=3.1  Score=31.61  Aligned_cols=58  Identities=16%  Similarity=0.119  Sum_probs=38.6

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|++++.++.  -++.+...+...+..+.....|
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D   85 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEA--GAEGIGAAFKQAGLEGRGAVLN   85 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHH--HHHHHHHHHHHHTCCCEEEECC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEEe
Confidence            3567889988877653   22345677999999999863  5565556665555555555554

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=86.50  E-value=1.9  Score=34.41  Aligned_cols=43  Identities=14%  Similarity=0.251  Sum_probs=30.6

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++.+||=+||| .|+.++.+|+ .|+ +|+++|.++.  -++.++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~--~~~~a~  233 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD--KFPKAI  233 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG--GHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH--HHHHHH
Confidence            34577899999987 4666665554 688 8999998864  444443

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=86.29  E-value=9.6  Score=29.21  Aligned_cols=60  Identities=15%  Similarity=0.126  Sum_probs=38.7

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCCh----------HHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNR----------IEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~----------~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.++.          ++.++...+.+...+.++.+...|
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   97 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVD   97 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECC
Confidence            4678899999988764   23355678999999998721          234555555555555555555554

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=86.21  E-value=2.4  Score=31.89  Aligned_cols=58  Identities=16%  Similarity=0.119  Sum_probs=37.0

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|++++.++.  .++.+...+...+.++.+...|
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D   63 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKE--KLEEAKLEIEQFPGQILTVQMD   63 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHCCSTTCEEEEECC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEcc
Confidence            3567889988877653   22345667999999999863  5555555554444445555444

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=86.08  E-value=4.8  Score=30.35  Aligned_cols=58  Identities=22%  Similarity=0.252  Sum_probs=37.2

Q ss_pred             cCCCCCeEEEeccCCCHHHHH----HhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           67 YRFSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ..+.++++|=.|++.| +|..    +++.|++|++++.++.  .++.+.+.++..+.++.+...|
T Consensus        27 ~~l~~k~vlITGasgg-IG~~la~~L~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D   88 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKH--GLEETAAKCKGLGAKVHTFVVD   88 (272)
T ss_dssp             CCCTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             cccCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEEcCHH--HHHHHHHHHHhcCCeEEEEEee
Confidence            3467888998887644 4543    4557899999999853  4555555555444445555444

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=85.91  E-value=9.6  Score=28.83  Aligned_cols=60  Identities=15%  Similarity=0.116  Sum_probs=37.9

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCC--------------hHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSN--------------RIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~--------------~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.+.              ..+.++.+...+...+..+.+...|
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   84 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVD   84 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcC
Confidence            4578899999988764   2335667899999999862              1234554444444444445555554

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=85.90  E-value=2  Score=33.86  Aligned_cols=43  Identities=23%  Similarity=0.182  Sum_probs=30.2

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHh-hcCCEEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++.+||=.|+| .|+..+.++ ..|++|++++.++.  -++.++
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~--~~~~~~  205 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE--KLELAK  205 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH--HHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHH
Confidence            34467899999996 466666444 46889999998853  455443

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=85.82  E-value=10  Score=29.01  Aligned_cols=59  Identities=20%  Similarity=0.356  Sum_probs=38.3

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|++++.+.. ...+...+-++..+.++.+...|
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D  105 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE-GDANETKQYVEKEGVKCVLLPGD  105 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH-HHHHHHHHHHHTTTCCEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch-HHHHHHHHHHHhcCCcEEEEECC
Confidence            4578899999987663   22345667999999999873 23444444445455555555554

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=85.80  E-value=3.3  Score=31.56  Aligned_cols=58  Identities=12%  Similarity=0.076  Sum_probs=38.5

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|++++.++.  .++.+...+...+..+.+...|
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D   90 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPG--STAAVQQRIIASGGTAQELAGD   90 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTT--TTHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHHHHHHhcCCeEEEEEec
Confidence            4678899999987653   22345667999999999874  4555555555555555555544

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=85.76  E-value=4.6  Score=30.48  Aligned_cols=60  Identities=15%  Similarity=0.101  Sum_probs=38.0

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCCh----------HHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNR----------IEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~----------~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.+..          .+.++.+...+...+.++.+...|
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   79 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVD   79 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEcc
Confidence            4578899999987664   22345677999999998721          224555555555555555555554

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=85.76  E-value=1.7  Score=34.93  Aligned_cols=42  Identities=26%  Similarity=0.336  Sum_probs=30.7

Q ss_pred             CCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        68 ~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ..++.+||=.||| .|+.++.+|+ +|+ .|+++|.++.  -++.++
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~--~~~~a~  227 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA--RLAHAK  227 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH--HHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHH--HHHHHH
Confidence            3467899999987 4777776665 687 7999999863  455554

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=85.74  E-value=3.4  Score=31.49  Aligned_cols=58  Identities=7%  Similarity=-0.092  Sum_probs=36.1

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      +.+++++|=-|++.|+   ++..+++.|++|++++.++.  -++.+.+.+...+..+.+...|
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D   81 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAK--NVSAAVDGLRAAGHDVDGSSCD   81 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHTTTCCEEEEECC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEECC
Confidence            3467889999987663   22345667999999999853  5555555555555555555554

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=85.42  E-value=5.4  Score=29.63  Aligned_cols=56  Identities=16%  Similarity=0.190  Sum_probs=36.2

Q ss_pred             CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      +.++++|=.|++.| +|.    .+++.|++|++++.++.  .++.+.+.+...+..+.+...|
T Consensus         5 l~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D   64 (247)
T 2jah_A            5 LQGKVALITGASSG-IGEATARALAAEGAAVAIAARRVE--KLRALGDELTAAGAKVHVLELD   64 (247)
T ss_dssp             TTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEECC
Confidence            56788998997755 343    45667999999999853  5555555554444445555444

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=85.36  E-value=2.1  Score=34.05  Aligned_cols=44  Identities=34%  Similarity=0.382  Sum_probs=31.0

Q ss_pred             ccCCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506           66 RYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        66 ~~~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ....++.+||=.|+| .|+.++.+++ .|++|++++.++.  -++.++
T Consensus       185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~--~~~~~~  230 (363)
T 3uog_A          185 GHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSRE--KLDRAF  230 (363)
T ss_dssp             TCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCch--hHHHHH
Confidence            344578899999987 4666665554 6889999998853  444443

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=85.31  E-value=4.1  Score=31.30  Aligned_cols=60  Identities=15%  Similarity=0.210  Sum_probs=37.7

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|++++.+...+..+.+...+...+.++.+...|
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  108 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGD  108 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEec
Confidence            4578899999987653   22345667999999998743234555555555555444444443

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=85.31  E-value=1.7  Score=34.51  Aligned_cols=43  Identities=33%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++.+||-.||| .|+.++.+++ .|+ +|+++|.++.  -++.++
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~--~~~~a~  213 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT--RLSKAK  213 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH--HHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH--HHHHHH
Confidence            34468899999987 4777775555 688 9999998853  444443

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=85.16  E-value=5  Score=29.94  Aligned_cols=57  Identities=11%  Similarity=0.091  Sum_probs=35.7

Q ss_pred             CCCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=.|++.| +|.    .+++.|++|++++.++.  -++...+.+...+..+.+...|
T Consensus        11 ~l~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D   71 (260)
T 2zat_A           11 PLENKVALVTASTDG-IGLAIARRLAQDGAHVVVSSRKQE--NVDRTVATLQGEGLSVTGTVCH   71 (260)
T ss_dssp             TTTTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEcc
Confidence            457788998887654 444    34567999999999853  4554444454444444444443

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=84.72  E-value=11  Score=28.45  Aligned_cols=61  Identities=16%  Similarity=0.104  Sum_probs=39.2

Q ss_pred             cCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCC-----------hHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSN-----------RIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~-----------~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|.+.           ..+.++.+.+.+...+.++.+...|
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   85 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLD   85 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence            34678899999988664   2334567799999999731           1235555555555555555555554

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=84.42  E-value=7.1  Score=29.58  Aligned_cols=58  Identities=9%  Similarity=0.085  Sum_probs=37.7

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|++++.++.  -++...+.+...+..+.+...|
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D   83 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPS--RVAQTVQEFRNVGHDAEAVAFD   83 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHH--HHHHHHHHHHHTTCCEEECCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEcC
Confidence            4678899999977653   22345677999999999853  5555555555544444444443

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=84.40  E-value=5.4  Score=29.87  Aligned_cols=56  Identities=23%  Similarity=0.356  Sum_probs=36.1

Q ss_pred             CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ++++++|=.|++.| +|.    .+++.|++|++++.++.  .++.+.+.+...+..+.+...|
T Consensus         5 l~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D   64 (262)
T 1zem_A            5 FNGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNRE--ALEKAEASVREKGVEARSYVCD   64 (262)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHTTTSCEEEEECC
T ss_pred             cCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEec
Confidence            46788998888755 333    45567999999999853  5555555554444445555444

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=84.29  E-value=2  Score=33.95  Aligned_cols=43  Identities=35%  Similarity=0.381  Sum_probs=30.4

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++.+||=.|+| .|+.++.+++ +|++|+++|.++.  -++.++
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~--~~~~~~  209 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR--RLEVAK  209 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHH--HHHHHH
Confidence            34478899999987 4666665554 6889999998853  455444

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=84.05  E-value=4.3  Score=31.06  Aligned_cols=57  Identities=14%  Similarity=0.072  Sum_probs=36.4

Q ss_pred             CCCCeEEEeccCCCHH---HHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~---~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ++++++|=-|++.|+=   +..+++.|++|++++.+..  .++.+...+...+..+.+...|
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D   85 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRT--EVEEVADEIVGAGGQAIALEAD   85 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHH--HHHHHHHHHTTTTCCEEEEECC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEcc
Confidence            4678899899876632   2245667999999999853  5555555554444445555554

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=84.04  E-value=6  Score=29.99  Aligned_cols=56  Identities=14%  Similarity=0.078  Sum_probs=35.8

Q ss_pred             CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ++++++|=.|++.| +|.    .+++.|++|++++.++.  -++.+.+.+...+.++.+...|
T Consensus        20 l~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D   79 (277)
T 2rhc_B           20 QDSEVALVTGATSG-IGLEIARRLGKEGLRVFVCARGEE--GLRTTLKELREAGVEADGRTCD   79 (277)
T ss_dssp             TTSCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEECC
Confidence            56788999998755 343    34567999999999853  4555445554444444444444

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=84.00  E-value=5.3  Score=30.09  Aligned_cols=58  Identities=17%  Similarity=0.205  Sum_probs=37.3

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH-cCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~-n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|++++.++.  -++.+.+.+.. .+.++.+...|
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~D   78 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVS--ELDAARRALGEQFGTDVHTVAID   78 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHHHCCCEEEEECC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhcCCcEEEEEec
Confidence            3578889989987663   23345667999999999863  45544444443 34455555554

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=83.94  E-value=5  Score=30.19  Aligned_cols=58  Identities=19%  Similarity=0.161  Sum_probs=37.1

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC-CcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|++++.++.  -++.+...+...+ .++.+...|
T Consensus         7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~D   68 (262)
T 3pk0_A            7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTA--DIDACVADLDQLGSGKVIGVQTD   68 (262)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHTTSSSCEEEEECC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhhCCCcEEEEEcC
Confidence            4578889988987653   22245667999999999863  5555555555443 344455444

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=83.89  E-value=1.9  Score=33.93  Aligned_cols=40  Identities=13%  Similarity=0.065  Sum_probs=29.4

Q ss_pred             CCCeEEEeccC-CCHHHHHHhh-c--CCEEEEEecCChHHHHHHHH
Q 031506           70 SGANVVELGAG-TSLPGLVAAK-V--GSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        70 ~~~~vLELG~G-tGl~~i~~a~-~--g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ++.+||=+|+| .|+.++.+++ +  |++|++++.++.  -++.++
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~--~~~~~~  213 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKK--HRDFAL  213 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHH--HHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHH--HHHHHH
Confidence            78999999997 4666665554 5  899999998853  444443

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=83.65  E-value=6.5  Score=29.69  Aligned_cols=60  Identities=15%  Similarity=0.164  Sum_probs=37.8

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCC-----------hHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSN-----------RIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~-----------~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.+.           ..+.++...+.+...+..+.+...|
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   81 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVD   81 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECC
Confidence            4578899999988664   2334567899999999831           1234555555555555555555554

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=83.58  E-value=1.9  Score=33.95  Aligned_cols=43  Identities=23%  Similarity=0.277  Sum_probs=30.9

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHhh-c-CCEEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAAK-V-GSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a~-~-g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++.+||=.|+| .|+.++.+++ . +++|+++|.++.  -++.++
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~--~~~~~~  213 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDD--RLALAR  213 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHH--HHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH--HHHHHH
Confidence            34578899999997 4777776665 4 679999999864  444443

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=83.42  E-value=2.5  Score=32.44  Aligned_cols=58  Identities=19%  Similarity=0.270  Sum_probs=36.8

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|++++.++.  .++.+...+...+..+.+...|
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D   65 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGN--ALAELTDEIAGGGGEAAALAGD   65 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHH--HHHHHHHHHTTTTCCEEECCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEECC
Confidence            3577889989987663   22345677999999999863  5555555554444344444333

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=83.35  E-value=6  Score=30.84  Aligned_cols=58  Identities=12%  Similarity=0.107  Sum_probs=38.3

Q ss_pred             CCCCCeEEEeccCCCHHH---HHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcC
Q 031506           68 RFSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~---i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d  127 (158)
                      .+.+++||=-|++.|+-.   ..+++.|++|++++.+..  -++.+.+.+...+.  .+.+...|
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~D   67 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQD--SIDKALATLEAEGSGPEVMGVQLD   67 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHHTCGGGEEEEECC
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCCCeEEEEECC
Confidence            356788999998877532   245667999999999864  55655555554443  34445444

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=83.29  E-value=8.6  Score=29.05  Aligned_cols=59  Identities=12%  Similarity=0.087  Sum_probs=38.3

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|++++.... +..+.+.+.+...+..+.+...|
T Consensus        25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D   86 (269)
T 4dmm_A           25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSA-GAADEVVAAIAAAGGEAFAVKAD   86 (269)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCCh-HHHHHHHHHHHhcCCcEEEEECC
Confidence            4578889988987663   23345677999999998542 35555555555555555555554

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=83.24  E-value=6  Score=29.95  Aligned_cols=58  Identities=16%  Similarity=0.150  Sum_probs=37.2

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC---cceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL---NCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.++.  .++...+.+...+.   .+.+...|
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~~D   71 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPD--KLAGAVQELEALGANGGAIRYEPTD   71 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHTTCCSSCEEEEEECC
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhCCCCceEEEEeCC
Confidence            3578889999987553   22345667999999999863  55555555554433   34444444

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=83.07  E-value=9.7  Score=29.29  Aligned_cols=58  Identities=21%  Similarity=0.161  Sum_probs=37.0

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC-CcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|++++.++.  -++.+...+...+ ..+.+...|
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~D   99 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPR--ELSSVTAELGELGAGNVIGVRLD   99 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGG--GGHHHHHHHTTSSSSCEEEEECC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhhCCCcEEEEEEe
Confidence            4578899999987664   22345667999999999864  4555444444433 344444444

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=83.03  E-value=2.6  Score=32.91  Aligned_cols=42  Identities=17%  Similarity=0.019  Sum_probs=29.2

Q ss_pred             cCCCCCeEEEecc--CCCHHHHH-HhhcCCEEEEEecCChHHHHHHH
Q 031506           67 YRFSGANVVELGA--GTSLPGLV-AAKVGSNVTLTDDSNRIEVLKNM  110 (158)
Q Consensus        67 ~~~~~~~vLELG~--GtGl~~i~-~a~~g~~v~~tD~~~~~~~l~~~  110 (158)
                      ...++++||-.||  |.|...+. ++..|++|+++|.++.  .++.+
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~--~~~~~  186 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE--KIAYL  186 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHH--HHHHH
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHH--HHHHH
Confidence            3457889999998  35555553 3447899999998753  45544

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=83.02  E-value=7.3  Score=31.05  Aligned_cols=44  Identities=20%  Similarity=0.149  Sum_probs=28.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHH
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEM  116 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~  116 (158)
                      ....|+.||||......-+...+.  .++=+|+   |++++.=++-+..
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~---P~vi~~K~~~l~~  142 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY---NESVELKNSILRE  142 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC---HHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC---HHHHHHHHHHhhh
Confidence            356899999999988887665433  5555555   4566654444443

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=83.02  E-value=2  Score=34.00  Aligned_cols=44  Identities=16%  Similarity=0.201  Sum_probs=30.7

Q ss_pred             ccCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           66 RYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        66 ~~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ....++.+||=.|+| .|+.++.+++ .|+ +|+++|.++.  -++.++
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~--~~~~~~  208 (352)
T 3fpc_A          162 ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKH--CCDIAL  208 (352)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHH--HHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH--HHHHHH
Confidence            334578899999987 4677775555 577 8999999853  444443

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=82.94  E-value=7.6  Score=28.65  Aligned_cols=56  Identities=14%  Similarity=0.190  Sum_probs=35.2

Q ss_pred             CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ++++++|=.|++ |.+|.    .+++.|++|++++.++.  .++...+.+...+.++.+...|
T Consensus        11 l~~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D   70 (260)
T 3awd_A           11 LDNRVAIVTGGA-QNIGLACVTALAEAGARVIIADLDEA--MATKAVEDLRMEGHDVSSVVMD   70 (260)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEec
Confidence            567889988876 44454    34557899999999853  4444444454444445555544

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=82.93  E-value=5.4  Score=31.03  Aligned_cols=46  Identities=15%  Similarity=0.128  Sum_probs=30.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCH---HHHHHhhcCC-EEEEEecCCh
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSL---PGLVAAKVGS-NVTLTDDSNR  103 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl---~~i~~a~~g~-~v~~tD~~~~  103 (158)
                      -+..-+.......+++++|=+|+| |.   +...+++.|+ +|++++.+..
T Consensus       113 G~~~~l~~~~~~l~~k~vlVlGaG-G~g~aia~~L~~~G~~~v~i~~R~~~  162 (283)
T 3jyo_A          113 GFGRGMEEGLPNAKLDSVVQVGAG-GVGNAVAYALVTHGVQKLQVADLDTS  162 (283)
T ss_dssp             HHHHHHHHHCTTCCCSEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSSHH
T ss_pred             HHHHHHHHhCcCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEECCHH
Confidence            334444444445788999999997 32   1224566788 7999999853

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=82.89  E-value=9  Score=28.78  Aligned_cols=58  Identities=19%  Similarity=0.312  Sum_probs=38.9

Q ss_pred             CCCCCeEEEeccCC--CH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH-cCCcceEEEcC
Q 031506           68 RFSGANVVELGAGT--SL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~Gt--Gl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~-n~~~~~~~~~d  127 (158)
                      .+++|.+|=-|++.  |+   ++..+++.|++|++++.++.  .++.+.+-++. .+.++.+...|
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D   66 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER--SRKELEKLLEQLNQPEAHLYQID   66 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG--GHHHHHHHHGGGTCSSCEEEECC
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCCcEEEEEcc
Confidence            46889999999753  53   34467788999999999875  55555555543 33345555554

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=82.69  E-value=7  Score=29.27  Aligned_cols=57  Identities=21%  Similarity=0.257  Sum_probs=35.5

Q ss_pred             CCCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHc--CCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~~d  127 (158)
                      .++++++|=.|++.| +|.    .+++.|++|++++.++.  -++.+.+.+...  +..+.+...|
T Consensus        10 ~l~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~D   72 (267)
T 1iy8_A           10 RFTDRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSE--GLEASKAAVLETAPDAEVLTTVAD   72 (267)
T ss_dssp             CCTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             cCCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhhcCCceEEEEEcc
Confidence            357788999998755 333    45667999999999853  455444444332  3344444444

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=82.54  E-value=7.5  Score=29.30  Aligned_cols=58  Identities=12%  Similarity=0.165  Sum_probs=35.5

Q ss_pred             cCCCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHH-HHcCCcceEEEcC
Q 031506           67 YRFSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVC-EMNKLNCRLLMTS  127 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~-~~n~~~~~~~~~d  127 (158)
                      ..++++++|=.|++.| +|.    .+++.|++|++++.++.  -++.+...+ ...+..+.+...|
T Consensus        17 ~~l~~k~~lVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~D   79 (267)
T 1vl8_A           17 FDLRGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLE--EASEAAQKLTEKYGVETMAFRCD   79 (267)
T ss_dssp             CCCTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHHHCCCEEEEECC
T ss_pred             cCCCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhcCCeEEEEEcC
Confidence            4567888998997755 343    45667999999999853  444444443 2223344444443

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=82.40  E-value=3.1  Score=32.65  Aligned_cols=45  Identities=7%  Similarity=-0.057  Sum_probs=31.6

Q ss_pred             ccCCCCCeEEEeccC--CCHHHHHHh-hcCCEEEEEecCChHHHHHHHHH
Q 031506           66 RYRFSGANVVELGAG--TSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        66 ~~~~~~~~vLELG~G--tGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~~  112 (158)
                      ....++.+||=.|||  .|...+.++ ..|++|++++.++.  -++.+++
T Consensus       140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~--~~~~~~~  187 (340)
T 3gms_A          140 LNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNK--HTEELLR  187 (340)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSST--THHHHHH
T ss_pred             cccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHh
Confidence            344578899999997  456666444 46899999999874  4454443

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=82.21  E-value=3.1  Score=32.78  Aligned_cols=43  Identities=14%  Similarity=0.172  Sum_probs=29.6

Q ss_pred             cCCCCCeEEEeccC--CCHHHHHH-hhc-CCEEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGAG--TSLPGLVA-AKV-GSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~G--tGl~~i~~-a~~-g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++++||-.|+|  .|...+.+ ... |++|+++|.++.  -++.++
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~--~~~~~~  213 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE--AVEAAK  213 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH--HHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHH--HHHHHH
Confidence            34477899999997  44444433 446 899999998853  555543

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=82.17  E-value=3.8  Score=32.14  Aligned_cols=42  Identities=26%  Similarity=0.374  Sum_probs=30.6

Q ss_pred             CCCCCeEEEecc--CCCHHHHHHh-hcCCEEEEEecCChHHHHHHHH
Q 031506           68 RFSGANVVELGA--GTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        68 ~~~~~~vLELG~--GtGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ..++.+||-.|+  |.|...+.++ ..|++|++++.++.  -++.++
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~--~~~~~~  208 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSED--KLRRAK  208 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHH--HHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHH
Confidence            446789999998  4677776544 46889999999853  555554

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=82.15  E-value=6.3  Score=30.62  Aligned_cols=58  Identities=17%  Similarity=0.140  Sum_probs=36.8

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecC----------ChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDS----------NRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~----------~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.+          ..  .++.....+...+..+.+...|
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D   94 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGS--AAQSVVDEITAAGGEAVADGSN   94 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTS--HHHHHHHHHHHTTCEEEEECCC
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHH--HHHHHHHHHHhcCCcEEEEECC
Confidence            4578889989987653   223456779999999986          33  4555555555555444444443

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=82.11  E-value=2.8  Score=33.50  Aligned_cols=44  Identities=23%  Similarity=0.268  Sum_probs=31.1

Q ss_pred             ccCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           66 RYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        66 ~~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ....++.+||=+||| .|+.++.+++ .|+ +|+++|.++.  -++.++
T Consensus       189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~--~~~~a~  235 (378)
T 3uko_A          189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSK--KYETAK  235 (378)
T ss_dssp             TCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTT--HHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH--HHHHHH
Confidence            344568899999987 5677665554 688 8999998875  444443

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=81.94  E-value=8.9  Score=28.12  Aligned_cols=50  Identities=16%  Similarity=0.179  Sum_probs=33.8

Q ss_pred             cCCCCCeEEEeccCCCHH---HHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC
Q 031506           67 YRFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK  118 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~---~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~  118 (158)
                      ..++++++|=.|++.|+=   +..+++.|++|++++.++.  -++.+...+...+
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~   62 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEA--SLAEVSDQIKSAG   62 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTT
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHH--HHHHHHHHHHhcC
Confidence            356788999899875532   2245667999999999864  5565555555443

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=81.89  E-value=3.4  Score=32.52  Aligned_cols=43  Identities=21%  Similarity=0.288  Sum_probs=30.3

Q ss_pred             cCCCCCeEEEecc-C-CCHHHHHHh-hcCCEEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGA-G-TSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~-G-tGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++.+||=.|| | .|...+.++ ..|++|++++.++.  -++.++
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~--~~~~~~  201 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTA--ATEFVK  201 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGG--GHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHH
Confidence            3457889999998 3 666666444 46889999999764  344444

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=81.80  E-value=1.9  Score=34.38  Aligned_cols=43  Identities=16%  Similarity=0.341  Sum_probs=30.4

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++.+||=+|+| .|+.++.+++ .|+ +|+++|.++.  -++.++
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~--~~~~a~  237 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE--KFPKAK  237 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH--HHHHHH
Confidence            34467899999987 5666665554 688 8999998864  444443

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=81.79  E-value=16  Score=28.24  Aligned_cols=67  Identities=18%  Similarity=0.147  Sum_probs=43.5

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCC----------hHHHHHHHHHHHHHcCCcceEEEcCC------
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSN----------RIEVLKNMRRVCEMNKLNCRLLMTSL------  128 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~----------~~~~l~~~~~n~~~n~~~~~~~~~d~------  128 (158)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.+.          ..+.++...+.+...+..+.+...|.      
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v  122 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASL  122 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            4578899999988664   2334567799999998761          12344444444555555555555543      


Q ss_pred             ------------CCcEEE
Q 031506          129 ------------PPSHIC  134 (158)
Q Consensus       129 ------------~fD~Ii  134 (158)
                                  ++|++|
T Consensus       123 ~~~~~~~~~~~g~iD~lV  140 (317)
T 3oec_A          123 QAVVDEALAEFGHIDILV  140 (317)
T ss_dssp             HHHHHHHHHHHSCCCEEE
T ss_pred             HHHHHHHHHHcCCCCEEE
Confidence                        689999

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=81.74  E-value=4.7  Score=30.17  Aligned_cols=57  Identities=18%  Similarity=0.022  Sum_probs=39.1

Q ss_pred             CCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .+++++|=-|++.|+   ++..+++.|++|++++.++.  .++.+...+...+.++.+...|
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D   64 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGE--KLAPLVAEIEAAGGRIVARSLD   64 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGG--GGHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEECc
Confidence            467889989988664   22345667999999999864  5666666666555555555554

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=81.65  E-value=6.7  Score=29.65  Aligned_cols=56  Identities=25%  Similarity=0.376  Sum_probs=35.2

Q ss_pred             CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC---cceEEEcC
Q 031506           69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL---NCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~~d  127 (158)
                      ++++++|=.|++.| +|.    .+++.|++|++++.++.  .++.+.+.+...+.   .+.+...|
T Consensus         4 l~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~D   66 (280)
T 1xkq_A            4 FSNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSE--RLEETRQIILKSGVSEKQVNSVVAD   66 (280)
T ss_dssp             TTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHTTTCCGGGEEEEECC
T ss_pred             CCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHcCCCCcceEEEEec
Confidence            46778888887655 343    45667999999999853  45555555544333   34445444

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=81.60  E-value=2.3  Score=30.49  Aligned_cols=42  Identities=17%  Similarity=0.219  Sum_probs=28.2

Q ss_pred             cCCCCCeEEEeccC--CCHHHH-HHhhcCCEEEEEecCChHHHHHHH
Q 031506           67 YRFSGANVVELGAG--TSLPGL-VAAKVGSNVTLTDDSNRIEVLKNM  110 (158)
Q Consensus        67 ~~~~~~~vLELG~G--tGl~~i-~~a~~g~~v~~tD~~~~~~~l~~~  110 (158)
                      ...++++||-.|++  .|...+ .+...|++|+++|.++.  .++.+
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~--~~~~~   79 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA--KREML   79 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH--HHHHH
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHH--HHHHH
Confidence            34477899999953  454444 33456899999998853  44444

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=81.58  E-value=12  Score=27.70  Aligned_cols=57  Identities=14%  Similarity=0.163  Sum_probs=35.6

Q ss_pred             CCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           70 SGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        70 ~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++|=-|++.|+   ++..+++.|++|++++.... +..+.+.+.+...+.++.+...|
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D   62 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSK-EKAEAVVEEIKAKGVDSFAIQAN   62 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-HHHHHHHHHHHHTTSCEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhcCCcEEEEEcc
Confidence            46678878876553   22245667999999988652 35555555555555555555554

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=81.37  E-value=8.8  Score=28.94  Aligned_cols=60  Identities=15%  Similarity=0.303  Sum_probs=37.4

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCCh----------HHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNR----------IEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~----------~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.++.          .+.++.....+...+..+.+...|
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   79 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVD   79 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            4578899999987663   22345667999999998621          224444444445445455555554

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=81.36  E-value=9.7  Score=28.54  Aligned_cols=58  Identities=12%  Similarity=0.060  Sum_probs=37.0

Q ss_pred             CCCCCeEEEeccCCCHH---HHHHhhcCCEEEEEecCChHHHHHHHHHHHHH-cCC-cceEEEcC
Q 031506           68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-NKL-NCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~---~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~-n~~-~~~~~~~d  127 (158)
                      .++++++|=-|++.|+=   +..+++.|++|++++.++.  -++.+.+.+.. .+. .+.+...|
T Consensus         5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~D   67 (265)
T 3lf2_A            5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGE--RLRAAESALRQRFPGARLFASVCD   67 (265)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHHSTTCCEEEEECC
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhcCCceEEEEeCC
Confidence            46788999999886632   2345667999999999863  55555555544 322 24444443

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=81.06  E-value=4.1  Score=32.41  Aligned_cols=43  Identities=14%  Similarity=0.289  Sum_probs=30.4

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++.+||=.|+| .|+.++.+++ +|+ +|+++|.++.  -++.++
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~--~~~~~~  234 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD--KFEKAK  234 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH--HHHHHH
Confidence            34467899999987 4666665554 688 8999998864  444443

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=81.04  E-value=6.7  Score=30.37  Aligned_cols=55  Identities=16%  Similarity=0.103  Sum_probs=37.0

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .+++|.+|=-|++.|+   ++..+++.|++|+++|.++.  .++.+.+.+   +.++.....|
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~--~l~~~~~~~---g~~~~~~~~D   83 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKD--VLDAAIAEI---GGGAVGIQAD   83 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHH---CTTCEEEECC
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHc---CCCeEEEEec
Confidence            4789999999998874   34456778999999999853  555443332   3344444443

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=81.01  E-value=3.6  Score=32.61  Aligned_cols=43  Identities=23%  Similarity=0.222  Sum_probs=30.1

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHhh-c-CCEEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAAK-V-GSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a~-~-g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++.+||=.|+| .|+.++.+++ . |++|+++|.++.  -++.++
T Consensus       183 ~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~--~~~~~~  228 (359)
T 1h2b_A          183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE--KLKLAE  228 (359)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH--HHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH--HHHHHH
Confidence            34578899999997 5555554454 5 889999998853  444443

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=80.79  E-value=2.6  Score=32.97  Aligned_cols=52  Identities=19%  Similarity=0.113  Sum_probs=34.1

Q ss_pred             HHHHHHH-hcccCCCCCeEEEecc-C-CCHHHHHHh-hcCCEEEEEecCChHHHHHHH
Q 031506           57 ILAEYVW-QQRYRFSGANVVELGA-G-TSLPGLVAA-KVGSNVTLTDDSNRIEVLKNM  110 (158)
Q Consensus        57 ~la~~l~-~~~~~~~~~~vLELG~-G-tGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~  110 (158)
                      .-+.+.. +.....++++||=.|| | .|...+.++ ..|++|++++.++.  -++.+
T Consensus       135 ~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~--~~~~~  190 (336)
T 4b7c_A          135 MTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAE--KCRFL  190 (336)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH--HHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHH
Confidence            4444444 3344557889999998 3 566666444 46889999998853  44444

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=80.69  E-value=4.3  Score=32.11  Aligned_cols=34  Identities=35%  Similarity=0.456  Sum_probs=26.1

Q ss_pred             CCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCCh
Q 031506           70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR  103 (158)
Q Consensus        70 ~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~  103 (158)
                      ++.+||=+|+| .|+.++.+++ .|++|++++.++.
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~  215 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNK  215 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence            78899999986 5666664444 6889999999864

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=80.54  E-value=8.9  Score=28.70  Aligned_cols=58  Identities=22%  Similarity=0.255  Sum_probs=36.9

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEE-ecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLT-DDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~t-D~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|+++ +.+..  ..+...+.+...+.++.+...|
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D   66 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAE--GAATAVAEIEKLGRSALAIKAD   66 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCH--HHHHHHHHHHTTTSCCEEEECC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHH--HHHHHHHHHHhcCCceEEEEcC
Confidence            4578899999988664   233456779999998 44443  4555555555545455555554

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=80.46  E-value=2.1  Score=39.41  Aligned_cols=42  Identities=7%  Similarity=-0.057  Sum_probs=34.7

Q ss_pred             CCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHH
Q 031506           71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVC  114 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~  114 (158)
                      ..+++||-||.|.+++.+.+.|.  .|.++|+++.  +.+..+.|.
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~--A~~ty~~N~  583 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDP--AAQAFRLNN  583 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHH--HHHHHHHHC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHH--HHHHHHHhC
Confidence            34799999999999999999996  5789999975  777666664

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=80.46  E-value=8.8  Score=28.59  Aligned_cols=56  Identities=16%  Similarity=0.217  Sum_probs=33.6

Q ss_pred             CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHH-HHHHHHHHHHc-CCcceEEEcC
Q 031506           69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEV-LKNMRRVCEMN-KLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~-l~~~~~n~~~n-~~~~~~~~~d  127 (158)
                      ++++++|=.|++.| +|.    .+++.|++|++++.++.  . ++.+.+.+... +..+.+...|
T Consensus         2 l~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~D   63 (260)
T 1x1t_A            2 LKGKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDA--AEIEKVRAGLAAQHGVKVLYDGAD   63 (260)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEECCSCH--HHHHHHHHHHHHHHTSCEEEECCC
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHcCCEEEEEeCCcc--hHHHHHHHHHHhccCCcEEEEECC
Confidence            35678888887655 444    34567999999999874  3 44444444332 3344444443

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=80.35  E-value=9.8  Score=28.33  Aligned_cols=56  Identities=21%  Similarity=0.227  Sum_probs=34.2

Q ss_pred             CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHc-CCcceEEEcC
Q 031506           69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n-~~~~~~~~~d  127 (158)
                      ++++++|=.|++.| +|.    .+++.|++|++++.++.  -++.+.+.+... +.++.+...|
T Consensus         5 l~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~D   65 (263)
T 3ai3_A            5 ISGKVAVITGSSSG-IGLAIAEGFAKEGAHIVLVARQVD--RLHEAARSLKEKFGVRVLEVAVD   65 (263)
T ss_dssp             CTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHHHCCCEEEEECC
T ss_pred             CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHH--HHHHHHHHHHHhcCCceEEEEcC
Confidence            46788898887755 343    34567999999999853  444444444332 3344444444

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=80.31  E-value=9.3  Score=28.21  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=33.6

Q ss_pred             CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEec-CChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDD-SNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~-~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ++++++|=.|++.| +|.    .+++.|++|++++. ++  +.++.+.+.+...+.++.+...|
T Consensus         2 l~~k~vlVTGas~g-iG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D   62 (246)
T 2uvd_A            2 LKGKVALVTGASRG-IGRAIAIDLAKQGANVVVNYAGNE--QKANEVVDEIKKLGSDAIAVRAD   62 (246)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHHHhcCCcEEEEEcC
Confidence            35678888887644 444    34567999999998 53  24554444444444444444444

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=80.15  E-value=8.3  Score=31.82  Aligned_cols=44  Identities=9%  Similarity=0.021  Sum_probs=30.5

Q ss_pred             HHHHHhcccCCCCCeEEEeccCCCHH-----HHHHhhcCCEEEEEecCC
Q 031506           59 AEYVWQQRYRFSGANVVELGAGTSLP-----GLVAAKVGSNVTLTDDSN  102 (158)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~-----~i~~a~~g~~v~~tD~~~  102 (158)
                      .+|.........++++|=.|+++|+=     +..+++.|++|++++.+.
T Consensus        48 i~y~~~~~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~   96 (418)
T 4eue_A           48 IDYCKKAIGFRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYET   96 (418)
T ss_dssp             HHHHHHSCCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCC
T ss_pred             HHHHhccCcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence            45655555556788999999988742     223344589999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.72
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.61
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.59
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.58
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.58
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.54
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.54
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.53
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.52
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.5
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.49
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.47
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.46
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.45
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.45
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.44
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.43
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.42
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.41
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.38
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.38
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.37
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.34
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.34
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.33
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.33
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.32
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.32
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.32
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.31
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.31
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.3
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.29
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.29
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.25
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.24
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.22
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.22
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.22
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.21
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.18
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.18
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.16
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.16
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.14
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.07
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.03
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.01
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.99
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.97
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.97
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.92
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.91
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.9
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.85
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.85
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.84
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.84
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.82
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.78
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.76
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.75
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.74
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.72
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.64
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.62
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.61
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.6
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.54
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.49
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.4
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.38
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.36
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.32
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.3
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.16
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.14
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.89
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.83
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.78
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.62
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.53
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.52
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.4
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.37
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.19
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.12
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.11
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.08
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.07
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.05
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.03
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.83
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.79
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	96.65
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.46
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	96.27
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.19
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.14
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.79
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.47
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	95.19
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.06
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	95.02
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.91
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.65
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	94.59
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.32
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.09
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	93.85
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.48
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.28
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	93.25
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	93.21
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.2
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.12
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.98
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.95
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.65
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.53
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.48
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.4
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.18
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.1
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.99
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.78
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.62
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	91.5
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.27
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.17
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	91.1
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.02
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	90.89
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.82
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	90.6
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.57
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	90.29
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.14
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.11
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	90.1
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.05
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	89.87
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.58
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	89.22
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	89.1
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	88.95
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.66
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	88.57
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	88.45
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	88.22
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	88.08
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	87.7
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	87.68
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	87.62
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.39
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	87.29
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	87.05
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	87.02
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	86.92
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	86.28
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	86.19
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	85.98
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	85.97
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	85.38
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	85.31
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.18
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	84.94
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	84.86
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	83.42
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	82.28
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	81.85
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	81.64
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	81.43
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	81.36
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	81.14
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	81.08
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	81.07
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	80.58
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	80.03
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	80.03

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=1.5e-17  Score=129.49  Aligned_cols=116  Identities=17%  Similarity=0.180  Sum_probs=92.2

Q ss_pred             ceEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 031506           34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV  113 (158)
Q Consensus        34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n  113 (158)
                      .+.|.|.+.+..++|.+  |.+..+.+++.+..  .++++|||+|||+|.+++.+++.|++|+++|+++.  |++.+++|
T Consensus        88 ~~~i~i~pg~aFGTG~H--~TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~--av~~A~~n  161 (254)
T d2nxca1          88 EIPLVIEPGMAFGTGHH--ETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPM--VLPQAEAN  161 (254)
T ss_dssp             SEEEECCCC-----CCS--HHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGG--GHHHHHHH
T ss_pred             ceEEEEccccccCcccc--chhhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhcCCEEEEEECChH--HHHHHHHH
Confidence            56788877777778776  88999999987643  57899999999999999999999999999999986  99999999


Q ss_pred             HHHcCCcceEEEcC-------CCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          114 CEMNKLNCRLLMTS-------LPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       114 ~~~n~~~~~~~~~d-------~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ++.|+++.++...+       .+||+|+++..+  ..+..++..+...|++
T Consensus       162 a~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~--~~l~~l~~~~~~~Lkp  210 (254)
T d2nxca1         162 AKRNGVRPRFLEGSLEAALPFGPFDLLVANLYA--ELHAALAPRYREALVP  210 (254)
T ss_dssp             HHHTTCCCEEEESCHHHHGGGCCEEEEEEECCH--HHHHHHHHHHHHHEEE
T ss_pred             HHHcCCceeEEeccccccccccccchhhhcccc--ccHHHHHHHHHHhcCC
Confidence            99999988776654       289999966443  3467777888777654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.61  E-value=6.7e-15  Score=109.18  Aligned_cols=101  Identities=24%  Similarity=0.264  Sum_probs=78.5

Q ss_pred             ecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEcC
Q 031506           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMTS  127 (158)
Q Consensus        51 vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~d  127 (158)
                      +++++.+|.+.+.    ..++++|||+|||+|.+++.+++.+.+|+++|+++.  +++.+++|++.|++.   +++...|
T Consensus        37 ~d~~t~lLi~~l~----~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~--~i~~a~~n~~~~~l~~~~i~~~~~d  110 (194)
T d1dusa_          37 VDKGTKILVENVV----VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRR--AIKLAKENIKLNNLDNYDIRVVHSD  110 (194)
T ss_dssp             CCHHHHHHHHHCC----CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHH--HHHHHHHHHHHTTCTTSCEEEEECS
T ss_pred             cCHHHHHHHHhCC----cCCCCeEEEEeecCChhHHHHHhhccccceeeeccc--cchhHHHHHHHhCCccceEEEEEcc
Confidence            4567777776553    346789999999999999999999999999999965  999999999998765   3444444


Q ss_pred             C-------CCcEEEecCCCCC-cc-HHHHHHHHHHHhcC
Q 031506          128 L-------PPSHICSRVLQDQ-SS-LRLIIIEVGIILLS  157 (158)
Q Consensus       128 ~-------~fD~Ii~d~iy~~-~~-~~~ll~tl~~ll~~  157 (158)
                      .       +||+|+++++|+. .. .+.+++.+..+|.+
T Consensus       111 ~~~~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkp  149 (194)
T d1dusa_         111 LYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKD  149 (194)
T ss_dssp             TTTTCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEE
T ss_pred             hhhhhccCCceEEEEcccEEecchhhhhHHHHHHHhcCc
Confidence            3       8999996666654 33 46788888877654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.59  E-value=2.9e-15  Score=113.55  Aligned_cols=97  Identities=13%  Similarity=0.118  Sum_probs=81.4

Q ss_pred             HHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC--------CC
Q 031506           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS--------LP  129 (158)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d--------~~  129 (158)
                      .+++.+.....++.+|||+|||||.++..+++.+++|+++|+|+.  |++.+++++..++.. +.+...|        .+
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~--~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~   82 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKE--MVEVASSFAQEKGVENVRFQQGTAESLPFPDDS   82 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHH--HHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChh--hhhhhhhhhcccccccccccccccccccccccc
Confidence            344555555567889999999999999999999999999999975  999999999988764 5555443        37


Q ss_pred             CcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          130 PSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       130 fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ||+|+ +.++.+.++...+++.+..+|.+
T Consensus        83 fD~v~~~~~l~~~~d~~~~l~~~~r~Lkp  111 (234)
T d1xxla_          83 FDIITCRYAAHHFSDVRKAVREVARVLKQ  111 (234)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEE
T ss_pred             cceeeeeceeecccCHHHHHHHHHHeeCC
Confidence            99999 99999999999999999998875

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.58  E-value=3.4e-15  Score=107.28  Aligned_cols=84  Identities=17%  Similarity=0.144  Sum_probs=71.8

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcC---------CCCcEEEe
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTS---------LPPSHICS  135 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d---------~~fD~Ii~  135 (158)
                      .+++++|||+|||||.+|+.++++|+ +|+++|.++.  +++.+++|++.+++..  .+...|         .+||+|++
T Consensus        12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~--a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~   89 (152)
T d2esra1          12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRK--AQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFL   89 (152)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHH--HHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred             hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchh--hhhhhhhhhhhcccccchhhhcccccccccccccccceeEe
Confidence            46899999999999999999999987 9999999965  9999999999998764  344433         28999999


Q ss_pred             cCCCCCccHHHHHHHHHH
Q 031506          136 RVLQDQSSLRLIIIEVGI  153 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~  153 (158)
                      ||+|......+.+..+..
T Consensus        90 DPPy~~~~~~~~l~~i~~  107 (152)
T d2esra1          90 DPPYAKETIVATIEALAA  107 (152)
T ss_dssp             CCSSHHHHHHHHHHHHHH
T ss_pred             chhhccchHHHHHHHHHH
Confidence            999998888888887754

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=5.8e-15  Score=108.15  Aligned_cols=92  Identities=14%  Similarity=0.089  Sum_probs=72.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC---------
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---------  127 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---------  127 (158)
                      .|.+++..+  ..++.+|||+|||+|.+|+.++++|++|+++|.++.  +++.+++|++.+++..++...+         
T Consensus        30 ~lf~~l~~~--~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~--a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~  105 (171)
T d1ws6a1          30 ALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPE--AVRLLKENVRRTGLGARVVALPVEVFLPEAK  105 (171)
T ss_dssp             HHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHH--HHHHHHHHHHHHTCCCEEECSCHHHHHHHHH
T ss_pred             HHHHHhhcc--ccCCCeEEEeccccchhhhhhhhccchhhhcccCHH--HHhhhhHHHHhhccccceeeeehhccccccc
Confidence            445555442  346789999999999999999999999999999965  9999999999999877665442         


Q ss_pred             ---CCCcEEEecCCCCCccHHHHHHHHH
Q 031506          128 ---LPPSHICSRVLQDQSSLRLIIIEVG  152 (158)
Q Consensus       128 ---~~fD~Ii~d~iy~~~~~~~ll~tl~  152 (158)
                         .+||+|++||+|.....+.+.+.+.
T Consensus       106 ~~~~~fD~If~DPPY~~~~~~~l~~l~~  133 (171)
T d1ws6a1         106 AQGERFTVAFMAPPYAMDLAALFGELLA  133 (171)
T ss_dssp             HTTCCEEEEEECCCTTSCTTHHHHHHHH
T ss_pred             ccCCccceeEEccccccCHHHHHHHHHH
Confidence               2899999999998876554444443

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.54  E-value=1.3e-14  Score=109.01  Aligned_cols=88  Identities=14%  Similarity=0.035  Sum_probs=75.9

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC--------CCCcEEE-ecC
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS--------LPPSHIC-SRV  137 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d--------~~fD~Ii-~d~  137 (158)
                      ..++.+|||+|||+|..+..+++.|++|+++|+++.  |++.++++++.++.. +.+...|        ..||+|+ ..+
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~--~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~   90 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTED--ILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA   90 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHH--HHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred             CCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHH--HHhhhhhccccccccccccccccccccccccccccccccccc
Confidence            346789999999999999999999999999999965  999999999887653 4555443        2799999 999


Q ss_pred             CCCCccHHHHHHHHHHHhcC
Q 031506          138 LQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       138 iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ++|.++...+++.+..+|.+
T Consensus        91 l~~~~d~~~~l~~~~r~Lkp  110 (231)
T d1vl5a_          91 AHHFPNPASFVSEAYRVLKK  110 (231)
T ss_dssp             GGGCSCHHHHHHHHHHHEEE
T ss_pred             ccccCCHHHHHHHHHHhcCC
Confidence            99999999999999998865

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=2.2e-14  Score=106.78  Aligned_cols=96  Identities=15%  Similarity=0.163  Sum_probs=76.3

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CC
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LP  129 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~  129 (158)
                      +..++.+..  .++.+|||||||+|..++.+++.|++|+++|+++.  |++.+++++...+........|        ..
T Consensus        27 ~~~~~~~~l--~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~--~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~  102 (226)
T d1ve3a1          27 LEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISED--MIRKAREYAKSRESNVEFIVGDARKLSFEDKT  102 (226)
T ss_dssp             HHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCCEEEECCTTSCCSCTTC
T ss_pred             HHHHHHHhc--CCCCEEEEECCCcchhhhhHhhhhccccccccccc--chhhhhhhhccccccccccccccccccccCcC
Confidence            344454432  25679999999999999999999999999999965  9999999988776666655443        27


Q ss_pred             CcEEE-ecCCCCCc--cHHHHHHHHHHHhcC
Q 031506          130 PSHIC-SRVLQDQS--SLRLIIIEVGIILLS  157 (158)
Q Consensus       130 fD~Ii-~d~iy~~~--~~~~ll~tl~~ll~~  157 (158)
                      ||+|+ .+++++.+  +...+++.+..+|++
T Consensus       103 fD~I~~~~~l~~~~~~d~~~~l~~i~~~Lkp  133 (226)
T d1ve3a1         103 FDYVIFIDSIVHFEPLELNQVFKEVRRVLKP  133 (226)
T ss_dssp             EEEEEEESCGGGCCHHHHHHHHHHHHHHEEE
T ss_pred             ceEEEEecchhhCChhHHHHHHHHHHHHcCc
Confidence            99999 99998865  667789988888764

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=1.4e-14  Score=108.66  Aligned_cols=76  Identities=14%  Similarity=0.121  Sum_probs=65.9

Q ss_pred             cccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----CCcEEEecCC
Q 031506           65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----PPSHICSRVL  138 (158)
Q Consensus        65 ~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----~fD~Ii~d~i  138 (158)
                      ...+++|++|||+|||||.+++.++++|+ +|+++|+++.  +++.+++|++.++...++...|.     +||+|++||+
T Consensus        41 ~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~--~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP  118 (201)
T d1wy7a1          41 SLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKE--AVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPP  118 (201)
T ss_dssp             HTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCC
T ss_pred             hcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHH--HHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCc
Confidence            34567899999999999999999999987 8999999965  99999999999988877776643     9999999999


Q ss_pred             CCCc
Q 031506          139 QDQS  142 (158)
Q Consensus       139 y~~~  142 (158)
                      |...
T Consensus       119 ~~~~  122 (201)
T d1wy7a1         119 FGSQ  122 (201)
T ss_dssp             CSSS
T ss_pred             cccc
Confidence            8653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.52  E-value=2.8e-14  Score=108.31  Aligned_cols=88  Identities=22%  Similarity=0.245  Sum_probs=72.3

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE-e-cCC
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC-S-RVL  138 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii-~-d~i  138 (158)
                      ..+.++|||+|||||..++.+++.|++|+++|+++.  |++.+++|+..++.++.+...|.       +||+|+ + ..+
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~--mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~  116 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEE--MLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI  116 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred             CCCCCEEEEeCCCCCccchhhcccceEEEEEeeccc--cccccccccccccccchheehhhhhcccccccchHhhhhhhh
Confidence            345679999999999999999999999999999965  99999999998888777766643       799999 4 666


Q ss_pred             CCC--ccHHHHHHHHHHHhcC
Q 031506          139 QDQ--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       139 y~~--~~~~~ll~tl~~ll~~  157 (158)
                      ++.  +....+++.++..|.+
T Consensus       117 ~~~~~~~~~~~L~~~~~~Lkp  137 (251)
T d1wzna1         117 MYFDEEDLRKLFSKVAEALKP  137 (251)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE
T ss_pred             hcCChHHHHHHHHHHHHHcCC
Confidence            665  4456788888877754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=3e-14  Score=108.63  Aligned_cols=104  Identities=13%  Similarity=-0.029  Sum_probs=86.6

Q ss_pred             cchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhh-cCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-
Q 031506           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-  127 (158)
Q Consensus        52 W~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-  127 (158)
                      +|.+......+.......++.+|||+|||+|..+..+++ .|++|+++|+++.  |++.+++++..+++.  +++...| 
T Consensus        15 ~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~--~~~~ar~~~~~~gl~~~v~~~~~d~   92 (245)
T d1nkva_          15 NPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSL--FTAQAKRRAEELGVSERVHFIHNDA   92 (245)
T ss_dssp             SSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred             CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccc--hhhHHHHHHHHhhccccchhhhhHH
Confidence            577777777777766667889999999999999997776 4789999999965  999999999998875  4455443 


Q ss_pred             ------CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 ------LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 ------~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                            .+||+|+ ..++++..+.+.+++.+...|.+
T Consensus        93 ~~~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkP  129 (245)
T d1nkva_          93 AGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKP  129 (245)
T ss_dssp             TTCCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEE
T ss_pred             hhccccCceeEEEEEehhhccCCHHHHHHHHHHHcCc
Confidence                  3899999 99999999999999999887764

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=6.1e-14  Score=109.90  Aligned_cols=88  Identities=16%  Similarity=0.136  Sum_probs=71.5

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC-
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL-  128 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~-  128 (158)
                      |.++.+.++...... .++.+|||||||||.+++.+++..  ++|+++|+++.  +++.+++|++.+++. +.+...|+ 
T Consensus        92 peTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~--Al~~A~~Na~~~~~~~v~~~~~d~~  168 (274)
T d2b3ta1          92 PDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPD--AVSLAQRNAQHLAIKNIHILQSDWF  168 (274)
T ss_dssp             TTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHH--HHHHHHHHHHHHTCCSEEEECCSTT
T ss_pred             cchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhH--HHhHHHHHHHHhCcccceeeecccc
Confidence            677888887766432 356789999999999999887754  49999999975  999999999999884 66666554 


Q ss_pred             ------CCcEEEecCCCCCcc
Q 031506          129 ------PPSHICSRVLQDQSS  143 (158)
Q Consensus       129 ------~fD~Ii~d~iy~~~~  143 (158)
                            +||+|+++|+|....
T Consensus       169 ~~~~~~~fDlIvsNPPYi~~~  189 (274)
T d2b3ta1         169 SALAGQQFAMIVSNPPYIDEQ  189 (274)
T ss_dssp             GGGTTCCEEEEEECCCCBCTT
T ss_pred             cccCCCceeEEEecchhhhhh
Confidence                  899999999998654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.47  E-value=1.5e-13  Score=106.73  Aligned_cols=98  Identities=14%  Similarity=0.043  Sum_probs=78.8

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-------
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-------  127 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-------  127 (158)
                      +++.+.......++.+|||+|||+|..+..+++. +++|+++|+++.  |++.++++....++.  +++...|       
T Consensus        55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~--~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~  132 (282)
T d2o57a1          55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPV--QNKRNEEYNNQAGLADNITVKYGSFLEIPCE  132 (282)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH--HHHHHHHHHHHHTCTTTEEEEECCTTSCSSC
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccch--hhhhhhccccccccccccccccccccccccc
Confidence            3333433344457889999999999999988765 889999999965  999999999887765  4454443       


Q ss_pred             -CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          128 -LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       128 -~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                       .+||+|+ .++++|.++...+++.+..+|.+
T Consensus       133 ~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkp  164 (282)
T d2o57a1         133 DNSYDFIWSQDAFLHSPDKLKVFQECARVLKP  164 (282)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE
T ss_pred             ccccchhhccchhhhccCHHHHHHHHHHhcCC
Confidence             2799999 99999999999999999998875

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.1e-13  Score=102.12  Aligned_cols=84  Identities=17%  Similarity=0.093  Sum_probs=70.5

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---------CCCcEEEec
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---------LPPSHICSR  136 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---------~~fD~Ii~d  136 (158)
                      .+.+.+||||+||||.+|+.++++|+ +|+++|.+..  +++.+++|++.++.. ..+...|         .+||+|++|
T Consensus        41 ~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~--a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~D  118 (183)
T d2fpoa1          41 VIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRA--VSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVD  118 (183)
T ss_dssp             HHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHH--HHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred             ccchhhhhhhhccccceeeeEEecCcceeEEEEEeec--hhhHHHHHHhhccccceeeeeecccccccccccccCEEEEc
Confidence            35788999999999999999999998 8999999965  999999999987653 3343332         389999999


Q ss_pred             CCCCCccHHHHHHHHHH
Q 031506          137 VLQDQSSLRLIIIEVGI  153 (158)
Q Consensus       137 ~iy~~~~~~~ll~tl~~  153 (158)
                      |+|.....+.++..+..
T Consensus       119 PPY~~~~~~~~l~~l~~  135 (183)
T d2fpoa1         119 PPFRRGLLEETINLLED  135 (183)
T ss_dssp             CSSSTTTHHHHHHHHHH
T ss_pred             CccccchHHHHHHHHHH
Confidence            99999988888887764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.45  E-value=3.9e-14  Score=106.12  Aligned_cols=70  Identities=16%  Similarity=0.198  Sum_probs=57.4

Q ss_pred             cccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-----CCCCcEEEecCC
Q 031506           65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-----SLPPSHICSRVL  138 (158)
Q Consensus        65 ~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-----d~~fD~Ii~d~i  138 (158)
                      ...++.|++|||+|||||.+++.++++|+ +|+++|+++.  +++.+++|+..    +.+...     +.+||+|++||+
T Consensus        43 ~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~--a~~~ar~N~~~----~~~~~~D~~~l~~~fD~Vi~NPP  116 (197)
T d1ne2a_          43 NDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPD--AIETAKRNCGG----VNFMVADVSEISGKYDTWIMNPP  116 (197)
T ss_dssp             HHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHH--HHHHHHHHCTT----SEEEECCGGGCCCCEEEEEECCC
T ss_pred             HcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHH--HHHHHHHcccc----ccEEEEehhhcCCcceEEEeCcc
Confidence            34678999999999999999999999987 7999999965  99999998753    334433     349999999999


Q ss_pred             CC
Q 031506          139 QD  140 (158)
Q Consensus       139 y~  140 (158)
                      |.
T Consensus       117 fg  118 (197)
T d1ne2a_         117 FG  118 (197)
T ss_dssp             C-
T ss_pred             cc
Confidence            84

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.45  E-value=1.9e-13  Score=101.10  Aligned_cols=88  Identities=17%  Similarity=0.166  Sum_probs=72.1

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-------CCCcEEE-ecCC
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-------LPPSHIC-SRVL  138 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-------~~fD~Ii-~d~i  138 (158)
                      ..++.+|||||||+|..++.++++|.+|+++|+++.  |++.++++++..++. +.+...|       ..||+|+ ..++
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~  105 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPA--SMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM  105 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHH--HHHHHHHHhhhccccchhhhheecccccccccccEEEEeeee
Confidence            345669999999999999999999999999999965  999999999887765 3444443       3899999 8888


Q ss_pred             CCC--ccHHHHHHHHHHHhcC
Q 031506          139 QDQ--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       139 y~~--~~~~~ll~tl~~ll~~  157 (158)
                      ++.  +....+++.+..+|.+
T Consensus       106 ~~~~~~~~~~~l~~~~~~L~p  126 (198)
T d2i6ga1         106 MFLEAQTIPGLIANMQRCTKP  126 (198)
T ss_dssp             GGSCTTHHHHHHHHHHHTEEE
T ss_pred             ecCCHHHHHHHHHHHHHHcCC
Confidence            875  4567889888887754

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.44  E-value=1.6e-13  Score=104.34  Aligned_cols=87  Identities=16%  Similarity=0.021  Sum_probs=70.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE--ecCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC--SRVLQ  139 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii--~d~iy  139 (158)
                      .++++|||+|||+|..++.++++|.+|+++|.|+.  |++.+++++..++.++++...|.       +||+|+  .++++
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~--ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQE--MLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN  113 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHH--HHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchh--hhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence            45689999999999999999999999999999965  99999999998888877765543       899998  37776


Q ss_pred             CCcc---HHHHHHHHHHHhcC
Q 031506          140 DQSS---LRLIIIEVGIILLS  157 (158)
Q Consensus       140 ~~~~---~~~ll~tl~~ll~~  157 (158)
                      +...   ...+++.++..|.+
T Consensus       114 ~~~~~~~~~~~l~~~~~~Lkp  134 (246)
T d1y8ca_         114 YIIDSDDLKKYFKAVSNHLKE  134 (246)
T ss_dssp             GCCSHHHHHHHHHHHHTTEEE
T ss_pred             ccCCHHHHHHHHHHHHHhCCC
Confidence            6554   45566666666543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.43  E-value=3.4e-13  Score=99.52  Aligned_cols=84  Identities=12%  Similarity=0.068  Sum_probs=70.9

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC------------CCCcE
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS------------LPPSH  132 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d------------~~fD~  132 (158)
                      ...+.+||||+||||.+|+.++++|+ +|+++|.+..  +++.+++|++.++..  +.+...|            .+||+
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~--a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDl  116 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFA--ALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL  116 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hcCCCEEEEcccccccccceeeecchhHHHHHHHHHH--HHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcce
Confidence            45789999999999999999999998 8999999964  999999999987764  3444443            27999


Q ss_pred             EEecCCCCCccHHHHHHHHHH
Q 031506          133 ICSRVLQDQSSLRLIIIEVGI  153 (158)
Q Consensus       133 Ii~d~iy~~~~~~~ll~tl~~  153 (158)
                      |+.||+|....+..++..+..
T Consensus       117 IflDPPY~~~~~~~~l~~i~~  137 (182)
T d2fhpa1         117 VLLDPPYAKQEIVSQLEKMLE  137 (182)
T ss_dssp             EEECCCGGGCCHHHHHHHHHH
T ss_pred             EEechhhhhhHHHHHHHHHHH
Confidence            999999999888888877653

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.42  E-value=4.4e-13  Score=98.59  Aligned_cols=88  Identities=15%  Similarity=0.005  Sum_probs=68.5

Q ss_pred             ccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------CCCcEEEe
Q 031506           66 RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------LPPSHICS  135 (158)
Q Consensus        66 ~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------~~fD~Ii~  135 (158)
                      ....++.+|||+|||+|.+++.+|+.+.+|+++|.++.  +++.+++|++.+++.  +++...|        ..||+|++
T Consensus        29 l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~--~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~  106 (186)
T d1l3ia_          29 AEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPE--AISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVV  106 (186)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHH--HHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEE
T ss_pred             cCCCCCCEEEEEECCeEcccccccccceEEEEecCCHH--HHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEE
Confidence            34457889999999999999999999889999999965  999999999999875  4444443        28999994


Q ss_pred             cCCCCCccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      +..+  ...+.+++.+...|.+
T Consensus       107 ~~~~--~~~~~~~~~~~~~Lkp  126 (186)
T d1l3ia_         107 GGSG--GELQEILRIIKDKLKP  126 (186)
T ss_dssp             SCCT--TCHHHHHHHHHHTEEE
T ss_pred             eCcc--ccchHHHHHHHHHhCc
Confidence            4333  2346777777766643

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=3.8e-14  Score=106.69  Aligned_cols=86  Identities=22%  Similarity=0.201  Sum_probs=67.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc---CCCCcEEE--ecCCCCCccH
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT---SLPPSHIC--SRVLQDQSSL  144 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~---d~~fD~Ii--~d~iy~~~~~  144 (158)
                      ++.+|||+|||+|..+..+++.|++|+++|+++.  |++.+++|...+.....+...   +.+||+|+  .++++|.++.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~--~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~  119 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKE--MLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK  119 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHH--HHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred             CCCEEEEECCCCchhcccccccceEEEEeecccc--cccccccccccccccccccccccccccccceeeecchhhhhhhH
Confidence            6779999999999999999999999999999965  999998764322111111111   33899998  4688889999


Q ss_pred             HHHHHHHHHHhcC
Q 031506          145 RLIIIEVGIILLS  157 (158)
Q Consensus       145 ~~ll~tl~~ll~~  157 (158)
                      ..+++.+..+|.+
T Consensus       120 ~~~l~~i~r~Lk~  132 (246)
T d2avna1         120 DKAFSEIRRVLVP  132 (246)
T ss_dssp             HHHHHHHHHHEEE
T ss_pred             HHHHHHHHhhcCc
Confidence            9999999988865

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.38  E-value=2.5e-13  Score=102.42  Aligned_cols=94  Identities=12%  Similarity=0.099  Sum_probs=72.5

Q ss_pred             HHHHHHhc-ccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-------CCC
Q 031506           58 LAEYVWQQ-RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-------SLP  129 (158)
Q Consensus        58 la~~l~~~-~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-------d~~  129 (158)
                      +.+|+.+. ...+++.+|||+|||+|..+..+++.|.+|+++|+++.  +++.++++...   .+.+...       +.+
T Consensus         7 ~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~--~i~~a~~~~~~---~~~~~~~~~~~~~~~~~   81 (225)
T d2p7ia1           7 MHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEE--AISHAQGRLKD---GITYIHSRFEDAQLPRR   81 (225)
T ss_dssp             HHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHH--HHHHHHHHSCS---CEEEEESCGGGCCCSSC
T ss_pred             HHHHHHHHhhhhCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHH--Hhhhhhccccc---ccccccccccccccccc
Confidence            33454432 23457889999999999999999999999999999965  99999876542   2333333       338


Q ss_pred             CcEEE-ecCCCCCccHHHHHHHHH-HHhc
Q 031506          130 PSHIC-SRVLQDQSSLRLIIIEVG-IILL  156 (158)
Q Consensus       130 fD~Ii-~d~iy~~~~~~~ll~tl~-~ll~  156 (158)
                      ||+|+ .++++|.++...+++.+. .+|.
T Consensus        82 fD~I~~~~vleh~~d~~~~l~~i~~~~Lk  110 (225)
T d2p7ia1          82 YDNIVLTHVLEHIDDPVALLKRINDDWLA  110 (225)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTTEE
T ss_pred             cccccccceeEecCCHHHHHHHHHHHhcC
Confidence            99999 999999999999998887 4554

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.38  E-value=2.3e-12  Score=102.33  Aligned_cols=117  Identities=20%  Similarity=0.068  Sum_probs=81.6

Q ss_pred             eEEEEeccCCCCCceEec--chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 031506           35 FSIAIIENMKEEYGLFVW--PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        35 ~~~~i~~~~~~~~g~~vW--~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~  112 (158)
                      +++.+.-.....+|+..=  +.-..+.+++..   .-++++||||+||||.+++.+++.|++|+.+|.+..  +++.+++
T Consensus        98 l~f~v~~~~~~~tG~f~dqr~nr~~~~~~~~~---~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~--al~~a~~  172 (309)
T d2igta1          98 VEFLGRFTAFRHVGVFPEQIVHWEWLKNAVET---ADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKK--AIGWAKE  172 (309)
T ss_dssp             EEEEEECCSSSCCSCCGGGHHHHHHHHHHHHH---SSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHH--HHHHHHH
T ss_pred             EEEEEeccCCCccccccchhHHHHHHHHHHhh---ccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHH--HHHHHHH
Confidence            455555544566776411  222223333333   235789999999999999999999999999999975  9999999


Q ss_pred             HHHHcCCc---ceEEEcC------------CCCcEEEecCCCCC-----------ccHHHHHHHHHHHhc
Q 031506          113 VCEMNKLN---CRLLMTS------------LPPSHICSRVLQDQ-----------SSLRLIIIEVGIILL  156 (158)
Q Consensus       113 n~~~n~~~---~~~~~~d------------~~fD~Ii~d~iy~~-----------~~~~~ll~tl~~ll~  156 (158)
                      |++.|++.   +++...|            .+||+||.||+++.           ..+..|++....||.
T Consensus       173 N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~  242 (309)
T d2igta1         173 NQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILS  242 (309)
T ss_dssp             HHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBC
T ss_pred             hhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcC
Confidence            99999875   3454444            27999999998653           224555555555543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.37  E-value=1.3e-12  Score=101.83  Aligned_cols=97  Identities=14%  Similarity=0.168  Sum_probs=79.4

Q ss_pred             HHHHHhcc-cCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------
Q 031506           59 AEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------  128 (158)
Q Consensus        59 a~~l~~~~-~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------  128 (158)
                      .+|+.+.. ...++.+|||+|||+|..++.+++.   +.+|+++|+++.  +++.+++|....+.++.+...|.      
T Consensus        15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~--~l~~a~~~~~~~~~~~~f~~~d~~~~~~~   92 (281)
T d2gh1a1          15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGET--LLAEARELFRLLPYDSEFLEGDATEIELN   92 (281)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHH--HHHHHHHHHHSSSSEEEEEESCTTTCCCS
T ss_pred             HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchh--Hhhhhhccccccccccccccccccccccc
Confidence            45555432 3346789999999999999988874   568999999965  99999999998877776665543      


Q ss_pred             -CCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          129 -PPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       129 -~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                       +||+|+ ..+++|.++...+++.+...|++
T Consensus        93 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp  123 (281)
T d2gh1a1          93 DKYDIAICHAFLLHMTTPETMLQKMIHSVKK  123 (281)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHTEEE
T ss_pred             CCceEEEEehhhhcCCCHHHHHHHHHHHcCc
Confidence             799999 99999999999999999988765

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.34  E-value=7.6e-12  Score=97.85  Aligned_cols=103  Identities=12%  Similarity=0.021  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcceEE--EcC---
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL--MTS---  127 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~--~~d---  127 (158)
                      +.....+.+.+.....++.+|||+|||+|.+++.+++. |++|+++|+++.  +++.++++++..++...+.  ..|   
T Consensus        36 AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~--q~~~a~~~~~~~~l~~~~~~~~~d~~~  113 (280)
T d2fk8a1          36 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKN--QHARCEQVLASIDTNRSRQVLLQGWED  113 (280)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHH--HHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHH--HHHHHHHHHHhhccccchhhhhhhhhh
Confidence            34445566666666668899999999999999977754 899999999965  8999999998887764433  222   


Q ss_pred             --CCCcEEE-ecCCCCC--ccHHHHHHHHHHHhcCC
Q 031506          128 --LPPSHIC-SRVLQDQ--SSLRLIIIEVGIILLSS  158 (158)
Q Consensus       128 --~~fD~Ii-~d~iy~~--~~~~~ll~tl~~ll~~~  158 (158)
                        .+||.|+ .+.+.+.  ..++.+++.++.+|+++
T Consensus       114 ~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg  149 (280)
T d2fk8a1         114 FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD  149 (280)
T ss_dssp             CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred             hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC
Confidence              3899999 9999887  46699999999999864

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.34  E-value=2.1e-12  Score=95.10  Aligned_cols=83  Identities=11%  Similarity=0.016  Sum_probs=69.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEc-----------CCCCcEE
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMT-----------SLPPSHI  133 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~-----------d~~fD~I  133 (158)
                      +.+.+||||.||||.+|+.++++|+ +|+++|.+..  +++.+++|++..+..   ..+...           ..+||+|
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~--a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlI  119 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKT--VANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVV  119 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHH--HHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccc--hhhhHhhHHhhhcccccccccccccccccccccccCCcccEE
Confidence            5778999999999999999999999 9999999965  999999999977653   223222           1279999


Q ss_pred             EecCCCCCccHHHHHHHHHH
Q 031506          134 CSRVLQDQSSLRLIIIEVGI  153 (158)
Q Consensus       134 i~d~iy~~~~~~~ll~tl~~  153 (158)
                      +.||+|....+++++..+..
T Consensus       120 FlDPPY~~~~~~~~l~~l~~  139 (183)
T d2ifta1         120 FLDPPFHFNLAEQAISLLCE  139 (183)
T ss_dssp             EECCCSSSCHHHHHHHHHHH
T ss_pred             EechhHhhhhHHHHHHHHHH
Confidence            99999999988888887764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.33  E-value=1.6e-12  Score=94.19  Aligned_cols=88  Identities=9%  Similarity=-0.028  Sum_probs=69.1

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-------------ceEEEcCC------
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-------------CRLLMTSL------  128 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-------------~~~~~~d~------  128 (158)
                      ..++.+|||+|||+|..++.+|++|.+|+++|+|+.  |++.++++++.....             ..+...|.      
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~--~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEA--AVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHH--HHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHH--HHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence            447889999999999999999999999999999975  999999888654321             22222222      


Q ss_pred             ---CCcEEE-ecCCCCCc--cHHHHHHHHHHHhcC
Q 031506          129 ---PPSHIC-SRVLQDQS--SLRLIIIEVGIILLS  157 (158)
Q Consensus       129 ---~fD~Ii-~d~iy~~~--~~~~ll~tl~~ll~~  157 (158)
                         .||+|+ +.++.+..  .....++.++..|++
T Consensus        96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp  130 (201)
T d1pjza_          96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ  130 (201)
T ss_dssp             HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS
T ss_pred             cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC
Confidence               799999 88887764  467888888888765

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=2.3e-12  Score=102.05  Aligned_cols=94  Identities=21%  Similarity=0.264  Sum_probs=71.7

Q ss_pred             HHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcC--------CC
Q 031506           61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTS--------LP  129 (158)
Q Consensus        61 ~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d--------~~  129 (158)
                      .|.+....+++++|||||||+|++++.+|++|+ +|+++|.++   +...++++++.|++..  .+...+        .+
T Consensus        24 ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~---~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~  100 (316)
T d1oria_          24 SMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS---ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEK  100 (316)
T ss_dssp             HHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST---THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSC
T ss_pred             HHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcH---HHhhhhhHHHHhCCccccceEeccHHHcccccce
Confidence            354444456899999999999999999999997 899999987   4567788888888764  333332        28


Q ss_pred             CcEEEecCC----CCCccHHHHHHHHHHHhcC
Q 031506          130 PSHICSRVL----QDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       130 fD~Ii~d~i----y~~~~~~~ll~tl~~ll~~  157 (158)
                      ||+|+++++    ++...++.++..+..+|.+
T Consensus       101 ~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp  132 (316)
T d1oria_         101 VDIIISEWMGYCLFYESMLNTVLHARDKWLAP  132 (316)
T ss_dssp             EEEEEECCCBBTBTBTCCHHHHHHHHHHHEEE
T ss_pred             eEEEeeeeeeeeeccHHHHHHHHHHHHhcCCC
Confidence            999985544    4556788899888888764

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=3e-12  Score=99.98  Aligned_cols=89  Identities=22%  Similarity=0.231  Sum_probs=71.1

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHHHcCCcceE--EEcCC-
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LMTSL-  128 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~~d~-  128 (158)
                      |.++.|.+++..........+++|+|||+|..++.+++.. ++|+++|+++.  +++.+++|++.+++..++  ...++ 
T Consensus        93 peTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~--Al~~A~~Na~~~~~~~~~~i~~~~~~  170 (271)
T d1nv8a_          93 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSK--AVEIARKNAERHGVSDRFFVRKGEFL  170 (271)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHH--HHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred             hhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhh--HHHHHHHHHHHcCCCceeEEeecccc
Confidence            6678888887765444456689999999999999877654 49999999965  999999999999886543  33332 


Q ss_pred             --------CCcEEEecCCCCCcc
Q 031506          129 --------PPSHICSRVLQDQSS  143 (158)
Q Consensus       129 --------~fD~Ii~d~iy~~~~  143 (158)
                              +||+|+++|+|-.+.
T Consensus       171 ~~~~~~~~~fDlIVsNPPYI~~~  193 (271)
T d1nv8a_         171 EPFKEKFASIEMILSNPPYVKSS  193 (271)
T ss_dssp             GGGGGGTTTCCEEEECCCCBCGG
T ss_pred             cccccccCcccEEEEcccccCcc
Confidence                    799999999998654

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.5e-12  Score=99.15  Aligned_cols=72  Identities=11%  Similarity=0.051  Sum_probs=57.6

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc----------------CCCCc
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT----------------SLPPS  131 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~----------------d~~fD  131 (158)
                      +..++||+|||+|.+++.+++.  +.+|+++|+++.  +++.+++|++.|++..++...                +.+||
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~--al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD  138 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDM--CFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD  138 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHH--HHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence            4468999999999999988775  679999999965  999999999999987554321                12699


Q ss_pred             EEEecCCCCCcc
Q 031506          132 HICSRVLQDQSS  143 (158)
Q Consensus       132 ~Ii~d~iy~~~~  143 (158)
                      +|+|+|+|+...
T Consensus       139 ~ivsNPPY~~~~  150 (250)
T d2h00a1         139 FCMCNPPFFANQ  150 (250)
T ss_dssp             EEEECCCCC---
T ss_pred             EEEecCcccccc
Confidence            999999999643

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.32  E-value=3.3e-12  Score=95.92  Aligned_cols=87  Identities=15%  Similarity=0.118  Sum_probs=69.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHhh----cCCEEEEEecCChHHHHHHHHHHHHHcCCcceEE--EcCC------CCcEEE-e
Q 031506           69 FSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL--MTSL------PPSHIC-S  135 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~----~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~--~~d~------~fD~Ii-~  135 (158)
                      .++.+|||||||||..+..+++    .+++|+++|+|+.  |++.++++++..+...++.  ..|.      ++|+|+ +
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~--ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~  115 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQP--MVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN  115 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHH--HHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHH--HHHHHHHHhHhhcccchhhhccchhhccccccceeeEEe
Confidence            3677999999999999998876    3669999999965  9999999998776654443  3332      679999 8


Q ss_pred             cCCCCC--ccHHHHHHHHHHHhcC
Q 031506          136 RVLQDQ--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       136 d~iy~~--~~~~~ll~tl~~ll~~  157 (158)
                      .++++.  ++...+++.+...|.+
T Consensus       116 ~~l~~~~~~d~~~~l~~i~~~Lkp  139 (225)
T d1im8a_         116 FTLQFLPPEDRIALLTKIYEGLNP  139 (225)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHHEEE
T ss_pred             eeccccChhhHHHHHHHHHHhCCC
Confidence            888776  4778899999988875

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=2.2e-12  Score=100.64  Aligned_cols=87  Identities=14%  Similarity=0.163  Sum_probs=67.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-----ceEEEcC-----------CCCcE
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-----CRLLMTS-----------LPPSH  132 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-----~~~~~~d-----------~~fD~  132 (158)
                      ..+++|||+|||+|..++.+++.|++|+++|+|+.  |++.++++...++..     ..+...+           .+||+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~--ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~  132 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDK--MLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  132 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchH--HHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence            35679999999999999999999999999999965  999999998876543     2233222           27999


Q ss_pred             EE--ecCCCCCc-------cHHHHHHHHHHHhcC
Q 031506          133 IC--SRVLQDQS-------SLRLIIIEVGIILLS  157 (158)
Q Consensus       133 Ii--~d~iy~~~-------~~~~ll~tl~~ll~~  157 (158)
                      |+  .+++.|..       ....+++.++.+|.+
T Consensus       133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  166 (292)
T d1xvaa_         133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP  166 (292)
T ss_dssp             EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE
T ss_pred             EEEecCchhhcCCcccChHHHHHHHHHHHHHcCc
Confidence            98  56776643       466788888888765

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.9e-12  Score=97.10  Aligned_cols=88  Identities=11%  Similarity=0.019  Sum_probs=68.1

Q ss_pred             CCCCCeEEEeccCCCHHHHHHh-hcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC--------CCCcEEE-ec
Q 031506           68 RFSGANVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS--------LPPSHIC-SR  136 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d--------~~fD~Ii-~d  136 (158)
                      ...+.+|||||||+|..+..++ +.+.+|+++|+++.  |++.+++++..++.. ..+...|        .+||+|+ ..
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~--~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~  135 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITED--FLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW  135 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHH--HHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHH--Hhhcccccccccccccccccccccccccccccccccccccc
Confidence            3456799999999999998765 44559999999965  999999998776543 3444443        2899999 99


Q ss_pred             CCCCCcc--HHHHHHHHHHHhcC
Q 031506          137 VLQDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~~~--~~~ll~tl~~ll~~  157 (158)
                      +++|.+.  ...+++.++.+|.+
T Consensus       136 ~l~h~~~~~~~~~l~~i~~~Lk~  158 (222)
T d2ex4a1         136 VIGHLTDQHLAEFLRRCKGSLRP  158 (222)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEE
T ss_pred             ccccchhhhhhhHHHHHHHhcCC
Confidence            9988765  35788888888764

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.5e-12  Score=97.99  Aligned_cols=95  Identities=22%  Similarity=0.292  Sum_probs=67.7

Q ss_pred             HHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------C
Q 031506           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------L  128 (158)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------~  128 (158)
                      +.|.+....+++++|||||||+|++++.+|+.|+ +|+++|.++.  +. .+++++..|+..  +.+...+        .
T Consensus        25 ~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~--~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~  101 (311)
T d2fyta1          25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEI--LY-QAMDIIRLNKLEDTITLIKGKIEEVHLPVE  101 (311)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTH--HH-HHHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred             HHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHH--HH-HHHHHHHHhCCCccceEEEeeHHHhcCccc
Confidence            3455555667899999999999999999999997 8999999974  54 456666666654  3344332        2


Q ss_pred             CCcEEEecCCCCCc----cHHHHHHHHHHHhcC
Q 031506          129 PPSHICSRVLQDQS----SLRLIIIEVGIILLS  157 (158)
Q Consensus       129 ~fD~Ii~d~iy~~~----~~~~ll~tl~~ll~~  157 (158)
                      +||+|+++++.+..    ..+.++.....+|.+
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp  134 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAK  134 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCC
Confidence            89999977765543    455566555555543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=7.3e-12  Score=99.49  Aligned_cols=93  Identities=23%  Similarity=0.308  Sum_probs=71.1

Q ss_pred             HHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcce--EEEcC--------CCC
Q 031506           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR--LLMTS--------LPP  130 (158)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~--~~~~d--------~~f  130 (158)
                      |.+....+++++|||||||+|++++.+|++|+ +|+++|.++   ++..++++++.|+...+  +...+        .+|
T Consensus        30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~---~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~  106 (328)
T d1g6q1_          30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS---IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKV  106 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST---HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCE
T ss_pred             HHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH---HHHHHHHHHHHhCccccceEEEeehhhccCcccce
Confidence            44334456889999999999999999999997 899999986   67888999998887543  33332        279


Q ss_pred             cEEEecCC----CCCccHHHHHHHHHHHhcC
Q 031506          131 SHICSRVL----QDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       131 D~Ii~d~i----y~~~~~~~ll~tl~~ll~~  157 (158)
                      |+|+++++    .+....+.++.....+|++
T Consensus       107 D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkp  137 (328)
T d1g6q1_         107 DIIISEWMGYFLLYESMMDTVLYARDHYLVE  137 (328)
T ss_dssp             EEEEECCCBTTBSTTCCHHHHHHHHHHHEEE
T ss_pred             eEEEEEecceeeccchhHHHHHHHHHhccCC
Confidence            99995443    4556678888888777764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.7e-12  Score=96.91  Aligned_cols=102  Identities=15%  Similarity=-0.065  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC---------------
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK---------------  118 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~---------------  118 (158)
                      ....|.+|+.+.....++.+|||+|||+|..++.+|++|++|+++|+|+.  +++.++++.....               
T Consensus        29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~--ai~~a~~~~~~~~~~~~~~~~~~~~~~~  106 (229)
T d2bzga1          29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISEL--GIQEFFTEQNLSYSEEPITEIPGTKVFK  106 (229)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHH--HHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHH--HHHHHHHHhhccccccchhcccccceee
Confidence            45667777766544557889999999999999999999999999999975  9998887765421               


Q ss_pred             ---CcceEEEcC---------CCCcEEE-ecCCCCC--ccHHHHHHHHHHHhcC
Q 031506          119 ---LNCRLLMTS---------LPPSHIC-SRVLQDQ--SSLRLIIIEVGIILLS  157 (158)
Q Consensus       119 ---~~~~~~~~d---------~~fD~Ii-~d~iy~~--~~~~~ll~tl~~ll~~  157 (158)
                         ..+.+...|         ..||+|+ .-++.+.  +..+..++.+..+|.+
T Consensus       107 ~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp  160 (229)
T d2bzga1         107 SSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK  160 (229)
T ss_dssp             ETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE
T ss_pred             ecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC
Confidence               122333333         2799999 7777654  6778888998888765

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.25  E-value=8.8e-12  Score=99.27  Aligned_cols=72  Identities=17%  Similarity=0.130  Sum_probs=61.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcC------------CCCcEEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTS------------LPPSHIC  134 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d------------~~fD~Ii  134 (158)
                      ++++|||+|||+|..++.+++.|+ +|+++|+++.  +++.+++|++.|++..  .+...|            .+||+|+
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~--al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi  222 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPR--AIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  222 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeeecccCcccchhhhhhhcCCcEEEeecCCHH--HHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence            588999999999999999999887 8999999975  9999999999999854  344433            2899999


Q ss_pred             ecCCCCCcc
Q 031506          135 SRVLQDQSS  143 (158)
Q Consensus       135 ~d~iy~~~~  143 (158)
                      +||++....
T Consensus       223 ~DpP~~~~~  231 (324)
T d2as0a2         223 LDPPAFVQH  231 (324)
T ss_dssp             ECCCCSCSS
T ss_pred             cCCccccCC
Confidence            999987543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.24  E-value=6.2e-12  Score=99.99  Aligned_cols=72  Identities=17%  Similarity=0.081  Sum_probs=60.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------------CCCcEEEe
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------------LPPSHICS  135 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------------~~fD~Ii~  135 (158)
                      .++++|||++||||..++.+|+.+++|+++|.++.  +++.+++|++.|++. +++...|            .+||+|+.
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~--al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAE--ALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHH--HHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHH--HHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            46889999999999999988887779999999965  999999999999985 4555443            27999999


Q ss_pred             cCCCCCc
Q 031506          136 RVLQDQS  142 (158)
Q Consensus       136 d~iy~~~  142 (158)
                      ||++...
T Consensus       222 DpP~~~~  228 (318)
T d1wxxa2         222 DPPAFAK  228 (318)
T ss_dssp             CCCCSCC
T ss_pred             cCCcccc
Confidence            8887643

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.22  E-value=7.1e-11  Score=92.81  Aligned_cols=103  Identities=10%  Similarity=0.017  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHh-hcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEE--Ec----
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL--MT----  126 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~--~~----  126 (158)
                      +.....+++.+.....+|.+|||+|||.|.+++.+| +.|++|+++++++.  .++.+++.+...++..++.  ..    
T Consensus        45 Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~--q~~~a~~~~~~~~l~~~v~~~~~d~~~  122 (291)
T d1kpia_          45 AQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSEN--QYAHDKAMFDEVDSPRRKEVRIQGWEE  122 (291)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH--HHHHHHHHHHHSCCSSCEEEEECCGGG
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHH--HHHHHHHHHHhhccchhhhhhhhcccc
Confidence            445556667776667789999999999999999554 67999999999965  8888898888877764432  22    


Q ss_pred             -CCCCcEEE-ecCCCCCc---------cHHHHHHHHHHHhcCC
Q 031506          127 -SLPPSHIC-SRVLQDQS---------SLRLIIIEVGIILLSS  158 (158)
Q Consensus       127 -d~~fD~Ii-~d~iy~~~---------~~~~ll~tl~~ll~~~  158 (158)
                       +.+||.|+ -..+-|..         .++.+++.+..+|.++
T Consensus       123 ~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg  165 (291)
T d1kpia_         123 FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD  165 (291)
T ss_dssp             CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT
T ss_pred             cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC
Confidence             34899999 88887754         4789999999999864

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.22  E-value=8.5e-11  Score=93.38  Aligned_cols=85  Identities=22%  Similarity=0.101  Sum_probs=67.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEcC------------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMTS------------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~d------------~~fD~I  133 (158)
                      ++++|||++||||.+|+.+++.|+ +|+++|.++.  +++.+++|++.|++.   +++...|            .+||+|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~--a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKR--SRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTT--HHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHH--HHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            588999999999999999888888 8999999987  999999999999974   3444443            279999


Q ss_pred             EecCCCCCc----------cHHHHHHHHHHHhc
Q 031506          134 CSRVLQDQS----------SLRLIIIEVGIILL  156 (158)
Q Consensus       134 i~d~iy~~~----------~~~~ll~tl~~ll~  156 (158)
                      +.||+....          .+.+|++....++.
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~  254 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS  254 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEE
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcC
Confidence            999986532          25556666655544

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.22  E-value=1.5e-11  Score=93.96  Aligned_cols=86  Identities=16%  Similarity=0.091  Sum_probs=67.5

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC---------CCcEEE-ec
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL---------PPSHIC-SR  136 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~---------~fD~Ii-~d  136 (158)
                      ++++|||||||+|.....+++.+. +|+++|+++.  |++.++++....+..  +.+...|.         +||+|+ ..
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~--~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEV--SINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHH--HHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHH--HHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            678999999999999888888775 8999999965  999999988876654  33444332         799999 88


Q ss_pred             CCCCC----ccHHHHHHHHHHHhcC
Q 031506          137 VLQDQ----SSLRLIIIEVGIILLS  157 (158)
Q Consensus       137 ~iy~~----~~~~~ll~tl~~ll~~  157 (158)
                      +++|.    +....+++.+..+|.+
T Consensus       102 ~l~~~~~~~~~~~~~l~~i~~~Lk~  126 (252)
T d1ri5a_         102 SFHYAFSTSESLDIAQRNIARHLRP  126 (252)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEE
T ss_pred             eeeecCCCHHHHHHHHHHHhceeCC
Confidence            88764    3456788888887764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.21  E-value=3.9e-11  Score=91.34  Aligned_cols=110  Identities=12%  Similarity=0.125  Sum_probs=82.0

Q ss_pred             CCceEecchHH-HHHHHHHhcc---cCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCC
Q 031506           46 EYGLFVWPCSV-ILAEYVWQQR---YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL  119 (158)
Q Consensus        46 ~~g~~vW~~~~-~la~~l~~~~---~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~  119 (158)
                      +..+++|+.-. .||..+....   ...++.+|||||||+|..+..+|+.+  ..|+++|+++.  |++.+++++..++.
T Consensus        46 ~~e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~--~i~~a~~~a~~~~n  123 (230)
T d1g8sa_          46 DEEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPR--IMRELLDACAEREN  123 (230)
T ss_dssp             TEEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHH--HHHHHHHHTTTCTT
T ss_pred             CceeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHH--HHHHHHHHHhhhcc
Confidence            45789997654 6666666532   34578899999999999999888875  48999999965  99999988776553


Q ss_pred             cceEEEc--------CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          120 NCRLLMT--------SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       120 ~~~~~~~--------d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ...+...        +..+|+++ ...+++.+....++..+...|++
T Consensus       124 i~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKp  170 (230)
T d1g8sa_         124 IIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKK  170 (230)
T ss_dssp             EEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEE
T ss_pred             cceEEEeeccCcccccccceeEEeeccccchHHHHHHHHHHHHhccc
Confidence            3333322        22677777 66677788888889999888765

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.6e-11  Score=91.65  Aligned_cols=101  Identities=14%  Similarity=0.093  Sum_probs=74.0

Q ss_pred             EecchHH--HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506           50 FVWPCSV--ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT  126 (158)
Q Consensus        50 ~vW~~~~--~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~  126 (158)
                      ..|...+  .+++.+.     .++.+|||+|||+|..+..+++.+ .+|+++|+++.  +++.++++.......++....
T Consensus        36 ~~w~~~~~~~la~~~~-----~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~--~~~~a~~~~~~~~~~~~~~~~  108 (229)
T d1zx0a1          36 ERWETPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDG--VFQRLRDWAPRQTHKVIPLKG  108 (229)
T ss_dssp             EGGGHHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHH--HHHHHHHHGGGCSSEEEEEES
T ss_pred             HHHHHHHHHHHHHhhc-----cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHH--HHHHHHHHhhhcccccccccc
Confidence            3486653  3444443     257799999999999999888865 58999999965  999999998877655555433


Q ss_pred             ----------CCCCcEEEecC------CCCCccHHHHHHHHHHHhcC
Q 031506          127 ----------SLPPSHICSRV------LQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       127 ----------d~~fD~Ii~d~------iy~~~~~~~ll~tl~~ll~~  157 (158)
                                +.+||.|+.|+      +++....+.+++.+..+|.+
T Consensus       109 ~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~Lkp  155 (229)
T d1zx0a1         109 LWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP  155 (229)
T ss_dssp             CHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred             cccccccccccccccceeecccccccccccccCHHHHHHHHHHHcCC
Confidence                      23789887554      34555677788888888765

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=1.6e-10  Score=90.52  Aligned_cols=104  Identities=12%  Similarity=0.104  Sum_probs=83.4

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHH-HhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcC--
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLV-AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTS--  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~-~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d--  127 (158)
                      .+...+.+++.+.....+|.+|||+|||.|.+++- +.+.|++|+++++++.  .++.++++++..++..  ++...|  
T Consensus        45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~--Q~~~a~~~~~~~g~~~~v~~~~~d~~  122 (285)
T d1kpga_          45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKN--QANHVQQLVANSENLRSKRVLLAGWE  122 (285)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH--HHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHH--HHHHHHHHHHhhhhhhhhHHHHhhhh
Confidence            45566677888777777899999999999999994 5667899999999965  8999999888877653  344333  


Q ss_pred             ---CCCcEEE-ecCCCCC--ccHHHHHHHHHHHhcCC
Q 031506          128 ---LPPSHIC-SRVLQDQ--SSLRLIIIEVGIILLSS  158 (158)
Q Consensus       128 ---~~fD~Ii-~d~iy~~--~~~~~ll~tl~~ll~~~  158 (158)
                         .+||.|+ ...+-+.  ...+.+++.+..+|.++
T Consensus       123 ~~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg  159 (285)
T d1kpga_         123 QFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD  159 (285)
T ss_dssp             GCCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred             cccccccceeeehhhhhcCchhHHHHHHHHHhhcCCC
Confidence               3899999 8888776  56789999999998763

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.16  E-value=1.4e-10  Score=86.98  Aligned_cols=107  Identities=13%  Similarity=0.114  Sum_probs=74.7

Q ss_pred             CceEecchHH-HHHHHHHhc--ccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcc
Q 031506           47 YGLFVWPCSV-ILAEYVWQQ--RYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC  121 (158)
Q Consensus        47 ~g~~vW~~~~-~la~~l~~~--~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~  121 (158)
                      .|++.|+.-. .|+..+...  ....++.+|||||||+|.....+++..  .+|+++|+++.  |++.++++++..+ ++
T Consensus        30 ~~~r~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~--~i~~a~~~a~~~~-ni  106 (209)
T d1nt2a_          30 DGYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAK--PFEKLLELVRERN-NI  106 (209)
T ss_dssp             TTEEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHH--HHHHHHHHHHHCS-SE
T ss_pred             cceeeeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHH--HHHHHHHHhhccC-Cc
Confidence            3678997543 566666652  234478899999999999999888753  38999999965  9999999988754 23


Q ss_pred             eEEEcCC-----------CCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          122 RLLMTSL-----------PPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       122 ~~~~~d~-----------~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .....|.           .+|+|+.| +++......+++.+...|++
T Consensus       107 ~~i~~d~~~~~~~~~~~~~vd~v~~~-~~~~~~~~~~l~~~~~~Lkp  152 (209)
T d1nt2a_         107 IPLLFDASKPWKYSGIVEKVDLIYQD-IAQKNQIEILKANAEFFLKE  152 (209)
T ss_dssp             EEECSCTTCGGGTTTTCCCEEEEEEC-CCSTTHHHHHHHHHHHHEEE
T ss_pred             eEEEeeccCccccccccceEEEEEec-ccChhhHHHHHHHHHHHhcc
Confidence            3332221           33444455 55666778888888887764

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.16  E-value=4.2e-11  Score=92.04  Aligned_cols=91  Identities=11%  Similarity=0.035  Sum_probs=66.9

Q ss_pred             hcccCCCCCeEEEeccCCCHHHHHHh-hcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE
Q 031506           64 QQRYRFSGANVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC  134 (158)
Q Consensus        64 ~~~~~~~~~~vLELG~GtGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii  134 (158)
                      +.....++.+|||+|||+|.++..++ +.+.+|+++|.++.  |++.++++....+ .+++...+        .+||+|+
T Consensus        87 ~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~--~l~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~I~  163 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKH--MLEEAKRELAGMP-VGKFILASMETATLPPNTYDLIV  163 (254)
T ss_dssp             HTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHH--HHHHHHHHTTTSS-EEEEEESCGGGCCCCSSCEEEEE
T ss_pred             hhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHH--HHHhhhccccccc-cceeEEccccccccCCCccceEE
Confidence            33334467799999999999998655 45568999999965  9999998765332 24444332        3799999


Q ss_pred             -ecCCCCCcc--HHHHHHHHHHHhcC
Q 031506          135 -SRVLQDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       135 -~d~iy~~~~--~~~ll~tl~~ll~~  157 (158)
                       ..+++|..+  ...+++.++..|.+
T Consensus       164 ~~~vl~hl~d~d~~~~l~~~~~~Lkp  189 (254)
T d1xtpa_         164 IQWTAIYLTDADFVKFFKHCQQALTP  189 (254)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred             eeccccccchhhhHHHHHHHHHhcCC
Confidence             999999865  45778888777653

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=4.1e-11  Score=92.76  Aligned_cols=76  Identities=16%  Similarity=0.098  Sum_probs=60.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcCC-------CCcEEEecCC-
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTSL-------PPSHICSRVL-  138 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d~-------~fD~Ii~d~i-  138 (158)
                      ++.+|||+|||+|.+++.+|++|+ +|+++|+++.  +++.+++|++.|++..  .+...|.       .||.|+.+++ 
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~--a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~  184 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPY--TFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  184 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHH--HHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHH--HHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC
Confidence            688999999999999999998885 9999999965  9999999999999864  4444443       6999995444 


Q ss_pred             CCCccHHHH
Q 031506          139 QDQSSLRLI  147 (158)
Q Consensus       139 y~~~~~~~l  147 (158)
                      +....++..
T Consensus       185 ~~~~~l~~a  193 (260)
T d2frna1         185 RTHEFIPKA  193 (260)
T ss_dssp             SGGGGHHHH
T ss_pred             chHHHHHHH
Confidence            444444433

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=9.5e-11  Score=90.35  Aligned_cols=84  Identities=11%  Similarity=0.060  Sum_probs=63.8

Q ss_pred             CeEEEeccCCCHHHHHHhhc------C--CEEEEEecCChHHHHHHHHHHHHHcCC----cceEEEc-------------
Q 031506           72 ANVVELGAGTSLPGLVAAKV------G--SNVTLTDDSNRIEVLKNMRRVCEMNKL----NCRLLMT-------------  126 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~------g--~~v~~tD~~~~~~~l~~~~~n~~~n~~----~~~~~~~-------------  126 (158)
                      .+|||+|||+|.++..+++.      +  .+++++|.++.  |++.++++++....    ...+...             
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAE--QIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK  119 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHH--HHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHH--HHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence            37999999999988755442      2  26889999865  99999998765321    1222211             


Q ss_pred             -CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506          127 -SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       127 -d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                       +.+||+|+ ..++|+.++.+.+++.+..+|.+
T Consensus       120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkp  152 (280)
T d1jqea_         120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGT  152 (280)
T ss_dssp             SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEE
T ss_pred             CCCceeEEEEccceecCCCHHHHHHHHHhhCCC
Confidence             23899999 99999999999999999998865

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=1.7e-10  Score=84.95  Aligned_cols=76  Identities=16%  Similarity=0.022  Sum_probs=60.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCcEEE-ecCCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPSHIC-SRVLQD  140 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD~Ii-~d~iy~  140 (158)
                      ++.+|||+|||+|..+..++    +++++|.++.  |++.++++    +  +.+...        +.+||+|+ ..++++
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~--~~~~a~~~----~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h  103 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK----IKIGVEPSER--MAEIARKR----G--VFVLKGTAENLPLKDESFDFALMVTTICF  103 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT----CCEEEESCHH--HHHHHHHT----T--CEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred             CCCeEEEECCCCcccccccc----eEEEEeCChh--hccccccc----c--ccccccccccccccccccccccccccccc
Confidence            45589999999998877653    4689999965  99887764    2  333333        23899999 999999


Q ss_pred             CccHHHHHHHHHHHhcC
Q 031506          141 QSSLRLIIIEVGIILLS  157 (158)
Q Consensus       141 ~~~~~~ll~tl~~ll~~  157 (158)
                      .++...+++.+..+|.+
T Consensus       104 ~~d~~~~l~~~~~~L~p  120 (208)
T d1vlma_         104 VDDPERALKEAYRILKK  120 (208)
T ss_dssp             SSCHHHHHHHHHHHEEE
T ss_pred             ccccccchhhhhhcCCC
Confidence            99999999999988765

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.7e-11  Score=91.73  Aligned_cols=88  Identities=14%  Similarity=0.218  Sum_probs=66.1

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcce------------------------
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR------------------------  122 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~------------------------  122 (158)
                      ..++.+|||+|||+|..++.+++.+. +|+++|+++.  |++.+++++..+.....                        
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~--~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDR--NREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  126 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHH--HHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHH--HHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence            45678999999999999987777666 7999999975  99999999876543210                        


Q ss_pred             -------EEEc------------CCCCcEEE-ecCCCCC----ccHHHHHHHHHHHhcC
Q 031506          123 -------LLMT------------SLPPSHIC-SRVLQDQ----SSLRLIIIEVGIILLS  157 (158)
Q Consensus       123 -------~~~~------------d~~fD~Ii-~d~iy~~----~~~~~ll~tl~~ll~~  157 (158)
                             ....            +..||+|+ ..++.+.    +.+..+++.+..+|++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp  185 (257)
T d2a14a1         127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP  185 (257)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE
T ss_pred             HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC
Confidence                   0000            22799999 8888654    4677788888887764

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.99  E-value=1.3e-09  Score=83.19  Aligned_cols=85  Identities=15%  Similarity=0.148  Sum_probs=66.2

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC------CCcEEE-ecCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL------PPSHIC-SRVL  138 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~------~fD~Ii-~d~i  138 (158)
                      +.++|||+|||+|..++.++++.  .++++.|+++   +++.+++++...++.  +++...|.      +||+|+ +.++
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~---~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vl  156 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAG---TVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVL  156 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTT---HHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCG
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHH---HHHHHHHHHHHhhcccchhhccccchhhcccchhheeecccc
Confidence            45799999999999999888874  4888889843   899999999887765  44444443      799999 9999


Q ss_pred             CCCcc--HHHHHHHHHHHhcC
Q 031506          139 QDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       139 y~~~~--~~~ll~tl~~ll~~  157 (158)
                      ++.+.  ...+++.++..|.+
T Consensus       157 h~~~d~~~~~~L~~~~~~LkP  177 (253)
T d1tw3a2         157 LNWPDHDAVRILTRCAEALEP  177 (253)
T ss_dssp             GGSCHHHHHHHHHHHHHTEEE
T ss_pred             ccCCchhhHHHHHHHHHhcCC
Confidence            87654  35778888877754

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=2.9e-09  Score=84.73  Aligned_cols=97  Identities=8%  Similarity=-0.007  Sum_probs=74.8

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC----
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS----  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d----  127 (158)
                      ..+..|.+++.+.....++.+||||-||+|.+|+.+|+.+.+|+++|.++.  +++.+++|++.|++. +.+...+    
T Consensus       195 ~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~--ai~~A~~na~~n~i~n~~~~~~~~~~~  272 (358)
T d1uwva2         195 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA--LVEKGQQNARLNGLQNVTFYHENLEED  272 (358)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHH--HHHHHHHHHHHTTCCSEEEEECCTTSC
T ss_pred             hhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHH--HHHHHHHhHHhcccccceeeecchhhh
Confidence            456666666666544556789999999999999999999999999999965  999999999999986 3443321    


Q ss_pred             --------CCCcEEEecCCCCCccHHHHHHHHHH
Q 031506          128 --------LPPSHICSRVLQDQSSLRLIIIEVGI  153 (158)
Q Consensus       128 --------~~fD~Ii~d~iy~~~~~~~ll~tl~~  153 (158)
                              .+||+|+.||+-.-.  .+.++.+..
T Consensus       273 ~~~~~~~~~~~d~vilDPPR~G~--~~~~~~l~~  304 (358)
T d1uwva2         273 VTKQPWAKNGFDKVLLDPARAGA--AGVMQQIIK  304 (358)
T ss_dssp             CSSSGGGTTCCSEEEECCCTTCC--HHHHHHHHH
T ss_pred             hhhhhhhhccCceEEeCCCCccH--HHHHHHHHH
Confidence                    168999999997663  245555543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.97  E-value=8.1e-10  Score=84.97  Aligned_cols=89  Identities=9%  Similarity=0.025  Sum_probs=61.2

Q ss_pred             HHhcccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-------CC
Q 031506           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-------LP  129 (158)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-------~~  129 (158)
                      |.......+|.+|||+|||+|.+++.+|+. +  .+|+++|.++.  +++.+++|++.++..  +.+...|       ..
T Consensus        77 Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~--~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~  154 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDED--NLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM  154 (250)
T ss_dssp             ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHH--HHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred             HHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHH--HHHHHHHHHHHhcCCCceEEEEeeeecccccce
Confidence            333334557899999999999999988874 3  48999999965  999999999976532  3444333       27


Q ss_pred             CcEEEecCCCCCccHHHHHHHHHHHhc
Q 031506          130 PSHICSRVLQDQSSLRLIIIEVGIILL  156 (158)
Q Consensus       130 fD~Ii~d~iy~~~~~~~ll~tl~~ll~  156 (158)
                      ||.|+.|.+-..    ..+..+...|+
T Consensus       155 fD~V~ld~p~p~----~~l~~~~~~LK  177 (250)
T d1yb2a1         155 YDAVIADIPDPW----NHVQKIASMMK  177 (250)
T ss_dssp             EEEEEECCSCGG----GSHHHHHHTEE
T ss_pred             eeeeeecCCchH----HHHHHHHHhcC
Confidence            999997765433    33444444443

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.92  E-value=1.9e-09  Score=80.71  Aligned_cols=83  Identities=19%  Similarity=0.196  Sum_probs=60.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCcc-eEEEcC-----
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RLLMTS-----  127 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~-~~~~~d-----  127 (158)
                      .+...+.+.....++.+|||+|||||..+..+|+. +  .+|+++|.++.  +++.+++|++..++.. .+...|     
T Consensus        62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~--~~~~a~~~~~~~~~~n~~~~~~d~~~~~  139 (213)
T d1dl5a1          62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK--ICEIAKRNVERLGIENVIFVCGDGYYGV  139 (213)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHH--HHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchh--hHHHhhhhHhhhcccccccccCchHHcc
Confidence            33333444444567889999999999999988874 3  38999999965  9999999999877643 233222     


Q ss_pred             ---CCCcEEE-ecCCCCC
Q 031506          128 ---LPPSHIC-SRVLQDQ  141 (158)
Q Consensus       128 ---~~fD~Ii-~d~iy~~  141 (158)
                         .+||+|+ .-.+.+.
T Consensus       140 ~~~~~fD~I~~~~~~~~~  157 (213)
T d1dl5a1         140 PEFSPYDVIFVTVGVDEV  157 (213)
T ss_dssp             GGGCCEEEEEECSBBSCC
T ss_pred             ccccchhhhhhhccHHHh
Confidence               2799999 5555554

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.91  E-value=1.9e-09  Score=81.54  Aligned_cols=80  Identities=14%  Similarity=0.219  Sum_probs=59.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------C
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------L  128 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~  128 (158)
                      .+..++.+.....++.+|||+|||||..+..+|+.+.+|+++|.++.  +++.+++|.... .++.+...|        .
T Consensus        57 ~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~--~~~~A~~~~~~~-~nv~~~~~d~~~g~~~~~  133 (224)
T d1vbfa_          57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEK--MYNYASKLLSYY-NNIKLILGDGTLGYEEEK  133 (224)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHH--HHHHHHHHHTTC-SSEEEEESCGGGCCGGGC
T ss_pred             hhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHH--HHHHHHHHHhcc-cccccccCchhhcchhhh
Confidence            33334555445567889999999999999999999999999999964  899999887754 245555443        2


Q ss_pred             CCcEEE-ecCCC
Q 031506          129 PPSHIC-SRVLQ  139 (158)
Q Consensus       129 ~fD~Ii-~d~iy  139 (158)
                      +||.|+ .-.+-
T Consensus       134 pfD~Iiv~~a~~  145 (224)
T d1vbfa_         134 PYDRVVVWATAP  145 (224)
T ss_dssp             CEEEEEESSBBS
T ss_pred             hHHHHHhhcchh
Confidence            799999 44443

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.90  E-value=3.3e-09  Score=80.36  Aligned_cols=109  Identities=17%  Similarity=0.170  Sum_probs=75.3

Q ss_pred             CCceEecchH-HHHHHHHHhc---ccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcC
Q 031506           46 EYGLFVWPCS-VILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNK  118 (158)
Q Consensus        46 ~~g~~vW~~~-~~la~~l~~~---~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~  118 (158)
                      +..+|+|+.- =.|+..|...   ....+|.+|||||||+|..+..+|+. |  ..|+++|+++.  |++.++++++..+
T Consensus        45 ~~e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~--~l~~a~~~a~~~~  122 (227)
T d1g8aa_          45 GEEYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPR--VLRELVPIVEERR  122 (227)
T ss_dssp             TEEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHH--HHHHHHHHHSSCT
T ss_pred             CeeEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHH--HHHHHHHHHHhcC
Confidence            4578999642 2355555543   23457899999999999999988875 3  49999999965  9999999887654


Q ss_pred             CcceEEEc----------CCCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          119 LNCRLLMT----------SLPPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       119 ~~~~~~~~----------d~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      ....+...          ...+|+|+.|+.+ .+....+++.+...|.+
T Consensus       123 ~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~-~~~~~~~l~~~~~~Lkp  170 (227)
T d1g8aa_         123 NIVPILGDATKPEEYRALVPKVDVIFEDVAQ-PTQAKILIDNAEVYLKR  170 (227)
T ss_dssp             TEEEEECCTTCGGGGTTTCCCEEEEEECCCS-TTHHHHHHHHHHHHEEE
T ss_pred             CceEEEEECCCcccccccccceEEEEEEccc-cchHHHHHHHHHHhccc
Confidence            33222221          0156777777554 45667778887777654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=6.7e-10  Score=85.36  Aligned_cols=90  Identities=19%  Similarity=0.262  Sum_probs=65.0

Q ss_pred             cCCCCCeEEEeccCCCHHHHH-HhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcc------------------------
Q 031506           67 YRFSGANVVELGAGTSLPGLV-AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC------------------------  121 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~-~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~------------------------  121 (158)
                      ...++.++||+|||+|+.++. +++.+.+|+++|+++.  |++.++++++......                        
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~--~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  128 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEV--NRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER  128 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHH--HHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHH--HHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence            456789999999999988865 4455669999999976  9999998775432110                        


Q ss_pred             -------eEEEcC--------------CCCcEEE-ecCCCCC----ccHHHHHHHHHHHhcCC
Q 031506          122 -------RLLMTS--------------LPPSHIC-SRVLQDQ----SSLRLIIIEVGIILLSS  158 (158)
Q Consensus       122 -------~~~~~d--------------~~fD~Ii-~d~iy~~----~~~~~ll~tl~~ll~~~  158 (158)
                             .+...|              ..||+|+ +-++.+.    +.+..+++.++.+|+++
T Consensus       129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPG  191 (263)
T d2g72a1         129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG  191 (263)
T ss_dssp             HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCC
Confidence                   011111              1599999 8887554    36788889998888753

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=7.3e-09  Score=80.08  Aligned_cols=85  Identities=14%  Similarity=0.038  Sum_probs=61.6

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcceE--EEcCC-------CCcEEE
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LMTSL-------PPSHIC  134 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~~d~-------~fD~Ii  134 (158)
                      ...++.+|||+|||+|.+++.+|+.   +.+|+++|.++.  +++.+++|++..++...+  ...|.       .||.|+
T Consensus       100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~--~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~  177 (266)
T d1o54a_         100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREE--FAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALF  177 (266)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHH--HHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEE
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHH--HHHHHHHHHHHhccccCcEEEeccccccccccceeeeE
Confidence            3458899999999999999988875   349999999965  999999999998864333  22221       678777


Q ss_pred             ecCCCCCccHHHHHHHHHHHhcC
Q 031506          135 SRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       135 ~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                      .|..    +.+..++.+..+|++
T Consensus       178 ~d~p----~p~~~l~~~~~~LKp  196 (266)
T d1o54a_         178 LDVP----DPWNYIDKCWEALKG  196 (266)
T ss_dssp             ECCS----CGGGTHHHHHHHEEE
T ss_pred             ecCC----CHHHHHHHHHhhcCC
Confidence            6544    334455555555543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.8e-09  Score=79.10  Aligned_cols=72  Identities=14%  Similarity=0.206  Sum_probs=54.0

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc------ceEEEcC--------CC
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN------CRLLMTS--------LP  129 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~------~~~~~~d--------~~  129 (158)
                      ...++.+|||+|||||..+..+|+.   ..+|+++|.++.  +++.+++|++..++.      +.+...|        .+
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~--l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~  150 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKE--LVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAP  150 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHH--HHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHH--HHHHHHHhccccCcccccccceEEEEeecccccchhhh
Confidence            3457889999999999999888775   349999999964  999999999876542      3344333        28


Q ss_pred             CcEEE-ecCCCC
Q 031506          130 PSHIC-SRVLQD  140 (158)
Q Consensus       130 fD~Ii-~d~iy~  140 (158)
                      ||.|+ .-.+.+
T Consensus       151 fD~I~~~~~~~~  162 (224)
T d1i1na_         151 YDAIHVGAAAPV  162 (224)
T ss_dssp             EEEEEECSBBSS
T ss_pred             hhhhhhhcchhh
Confidence            99999 544444

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.84  E-value=1.5e-08  Score=75.46  Aligned_cols=86  Identities=10%  Similarity=-0.018  Sum_probs=65.4

Q ss_pred             CCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC----------CCCcEEE-ec
Q 031506           71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS----------LPPSHIC-SR  136 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d----------~~fD~Ii-~d  136 (158)
                      +..|||+|||+|...+.+|+..  .+++++|+++.  ++..+.++++.+++. +++...|          ..+|.|+ .-
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~--~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f  107 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKS--VIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  107 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHH--HHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchH--HHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence            4479999999999999888875  58999999975  999999999988875 5555443          2788887 43


Q ss_pred             C-CCCCccH-------HHHHHHHHHHhcCC
Q 031506          137 V-LQDQSSL-------RLIIIEVGIILLSS  158 (158)
Q Consensus       137 ~-iy~~~~~-------~~ll~tl~~ll~~~  158 (158)
                      | ++....+       +++++.++.+|+++
T Consensus       108 p~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg  137 (204)
T d2fcaa1         108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKG  137 (204)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred             ccccchhhhcchhhhHHHHHHHHHHhCCCC
Confidence            3 3333322       68999999988764

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.82  E-value=6.5e-09  Score=78.10  Aligned_cols=82  Identities=12%  Similarity=0.201  Sum_probs=61.7

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC------
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL------  128 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~------  128 (158)
                      .+...+.+.....++.+|||+|||||..+.++|+. |.+|+++|.++.  +++.+++|++..+.. +.+...|.      
T Consensus        65 ~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~--l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~  142 (215)
T d1jg1a_          65 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPE--LVEFAKRNLERAGVKNVHVILGDGSKGFPP  142 (215)
T ss_dssp             HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHH--HHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred             hhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHH--HHHHHHHHHHHcCCceeEEEECccccCCcc
Confidence            34334444455667889999999999999988875 678999999964  999999999988754 45554432      


Q ss_pred             --CCcEEE-ecCCCC
Q 031506          129 --PPSHIC-SRVLQD  140 (158)
Q Consensus       129 --~fD~Ii-~d~iy~  140 (158)
                        +||.|+ .-.+..
T Consensus       143 ~~pfD~Iiv~~a~~~  157 (215)
T d1jg1a_         143 KAPYDVIIVTAGAPK  157 (215)
T ss_dssp             GCCEEEEEECSBBSS
T ss_pred             cCcceeEEeeccccc
Confidence              899999 544443

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.78  E-value=1.2e-08  Score=78.86  Aligned_cols=74  Identities=23%  Similarity=0.261  Sum_probs=54.8

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHc--CC--cceEEEc--------CCCCcE
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMN--KL--NCRLLMT--------SLPPSH  132 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n--~~--~~~~~~~--------d~~fD~  132 (158)
                      ..+|.+|||+|||+|.+++.+|+. |  .+|++.|.++.  +++.+++|++..  ..  ++.+...        +..||.
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~--~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDa  171 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRAD--HAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDR  171 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHH--HHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEE
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHH--HHHHHHHhhhhhccCCCceEEEEecccccccccCCCcce
Confidence            347899999999999999988875 4  39999999964  999999999863  21  2333333        237999


Q ss_pred             EEecCCCCCcc
Q 031506          133 ICSRVLQDQSS  143 (158)
Q Consensus       133 Ii~d~iy~~~~  143 (158)
                      |+.|.......
T Consensus       172 V~ldlp~P~~~  182 (264)
T d1i9ga_         172 AVLDMLAPWEV  182 (264)
T ss_dssp             EEEESSCGGGG
T ss_pred             EEEecCCHHHH
Confidence            99775444333

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=5.3e-09  Score=85.42  Aligned_cols=95  Identities=16%  Similarity=0.020  Sum_probs=66.8

Q ss_pred             HHhcccCCCCCeEEEeccCCCHHHHHHhh-cCC-EEEEEecCChHHHHHHHHHHHHHcCCc----------ceEEE-cC-
Q 031506           62 VWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN----------CRLLM-TS-  127 (158)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~----------~~~~~-~d-  127 (158)
                      +.+.....++.++||||||+|.+.+.+|+ .|+ +|+++|+++.  +++.++++++..+..          ..... .+ 
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~--~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f  285 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDD--ASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF  285 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHH--HHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred             HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHH--HHHHHHHHHHHHhhhhhhhccccccceeeeeech
Confidence            33334455788999999999999997765 454 8999999975  999999988754321          11111 11 


Q ss_pred             ---------C-CCcEEEecCCCCCccHHHHHHHHHHHhcCC
Q 031506          128 ---------L-PPSHICSRVLQDQSSLRLIIIEVGIILLSS  158 (158)
Q Consensus       128 ---------~-~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~~  158 (158)
                               + .+|+|+.+...+.+.+...++.+...|+++
T Consensus       286 ~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPG  326 (406)
T d1u2za_         286 VDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVG  326 (406)
T ss_dssp             TTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTT
T ss_pred             hhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCC
Confidence                     1 577888656667788888888887777654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.2e-08  Score=78.25  Aligned_cols=94  Identities=12%  Similarity=-0.023  Sum_probs=66.1

Q ss_pred             HHhcccCCCCCeEEEeccCCCHHHHHHhhc-CC-EEEEEecCChHHHHHHHHHHHHHc----------CCcceEEEcCC-
Q 031506           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMN----------KLNCRLLMTSL-  128 (158)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~-~v~~tD~~~~~~~l~~~~~n~~~n----------~~~~~~~~~d~-  128 (158)
                      +.+.....++.+|||+|||+|.+.+.+|+. ++ +++++|+++.  +++.++++++..          ..++.+...|. 
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~--~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~  220 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADI--PAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL  220 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHH--HHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred             HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHH--HHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence            334334456789999999999999977654 54 8999999965  888888776542          12355555554 


Q ss_pred             ---------CCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506          129 ---------PPSHICSRVLQDQSSLRLIIIEVGIILLS  157 (158)
Q Consensus       129 ---------~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~  157 (158)
                               ..|+|++..+++.+.+...++.+...|++
T Consensus       221 ~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKp  258 (328)
T d1nw3a_         221 SEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKE  258 (328)
T ss_dssp             SHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCT
T ss_pred             ccccccccCcceEEEEcceecchHHHHHHHHHHHhCCC
Confidence                     24777766666777777777777766654

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.74  E-value=2.8e-08  Score=75.90  Aligned_cols=85  Identities=19%  Similarity=0.063  Sum_probs=65.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcce--EEEcCC------CCcEEE-ecCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--LLMTSL------PPSHIC-SRVL  138 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~--~~~~d~------~fD~Ii-~d~i  138 (158)
                      ..++|||+|||+|..+..++++.  .++++.|++   ++++.++++++..++..+  +...|.      +||+|+ ..++
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp---~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vL  157 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELA---GPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVL  157 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECH---HHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCG
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecCh---HHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccc
Confidence            34689999999999999888874  589999983   489999999988776543  333332      799999 9999


Q ss_pred             CCCcc--HHHHHHHHHHHhcC
Q 031506          139 QDQSS--LRLIIIEVGIILLS  157 (158)
Q Consensus       139 y~~~~--~~~ll~tl~~ll~~  157 (158)
                      ++.+.  ...+++.++..|.+
T Consensus       158 h~~~d~~~~~lL~~i~~~Lkp  178 (256)
T d1qzza2         158 LNWSDEDALTILRGCVRALEP  178 (256)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE
T ss_pred             cccCcHHHHHHHHHHHhhcCC
Confidence            87644  45678888776654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=3.8e-08  Score=75.54  Aligned_cols=66  Identities=14%  Similarity=0.034  Sum_probs=50.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRV  137 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~  137 (158)
                      .++.+|||+|||+|..+..+++.+  .+++++|+++.  |++.++++..    ++.+...|        ..||+|+ ...
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~--~~~~a~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~  156 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV--AIKAAAKRYP----QVTFCVASSHRLPFSDTSMDAIIRIYA  156 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHH--HHHHHHHHCT----TSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHh--hhhhhhcccc----cccceeeehhhccCCCCCEEEEeecCC
Confidence            467799999999999999888874  48999999965  9988776532    34444432        3799999 766


Q ss_pred             CCC
Q 031506          138 LQD  140 (158)
Q Consensus       138 iy~  140 (158)
                      +.+
T Consensus       157 ~~~  159 (268)
T d1p91a_         157 PCK  159 (268)
T ss_dssp             CCC
T ss_pred             HHH
Confidence            654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.9e-08  Score=77.36  Aligned_cols=48  Identities=19%  Similarity=0.170  Sum_probs=41.3

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHc
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMN  117 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n  117 (158)
                      ..+|.+|||+|||+|.+++.+|+. |  .+|++.|+++.  +++.+++|++..
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~--~~~~A~~n~~~~  146 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKD--HHDLAKKNYKHW  146 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHH--HHHHHHHHHHHH
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHH--HHHHHHHHHHHh
Confidence            457899999999999999988875 3  38999999964  999999999853

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.62  E-value=2.5e-08  Score=75.16  Aligned_cols=71  Identities=10%  Similarity=0.180  Sum_probs=51.5

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc----C----CEEEEEecCChHHHHHHHHHHHHHcCC------cceEEEcC-----
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV----G----SNVTLTDDSNRIEVLKNMRRVCEMNKL------NCRLLMTS-----  127 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~----g----~~v~~tD~~~~~~~l~~~~~n~~~n~~------~~~~~~~d-----  127 (158)
                      ...++.+|||+|||||..+.++++.    |    .+|+++|.++.  +++.+++|+..+..      ++.+...|     
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~--l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~  154 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAE--LVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY  154 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHH--HHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHH--HHHHHHHhhhhcchhhcCccEEEEEeccccccc
Confidence            3457889999999999998877765    2    38999999964  99999998765432      23444333     


Q ss_pred             ---CCCcEEE-ecCCC
Q 031506          128 ---LPPSHIC-SRVLQ  139 (158)
Q Consensus       128 ---~~fD~Ii-~d~iy  139 (158)
                         .+||.|+ .-.+.
T Consensus       155 ~~~~~fD~Iiv~~a~~  170 (223)
T d1r18a_         155 PPNAPYNAIHVGAAAP  170 (223)
T ss_dssp             GGGCSEEEEEECSCBS
T ss_pred             ccccceeeEEEEeech
Confidence               2899999 44443

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.61  E-value=2.5e-07  Score=68.56  Aligned_cols=86  Identities=16%  Similarity=0.006  Sum_probs=63.4

Q ss_pred             CCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC----------CCCcEEE-ec
Q 031506           71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS----------LPPSHIC-SR  136 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d----------~~fD~Ii-~d  136 (158)
                      ...|||+|||+|-..+.+|+..  ..++++|+++.  ++..+.+++..++++ +++...|          ..+|.|+ .-
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~--~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f  109 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKS--VLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  109 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHH--HHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHH--HHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence            3479999999999999888874  48999999965  899988888887764 5555443          2788887 43


Q ss_pred             CC-CCCcc-------HHHHHHHHHHHhcCC
Q 031506          137 VL-QDQSS-------LRLIIIEVGIILLSS  158 (158)
Q Consensus       137 ~i-y~~~~-------~~~ll~tl~~ll~~~  158 (158)
                      |- +....       .+++++.++.+|.++
T Consensus       110 PdPw~K~~h~krRl~~~~~l~~~~~~Lkpg  139 (204)
T d1yzha1         110 SDPWPKKRHEKRRLTYKTFLDTFKRILPEN  139 (204)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred             cccccchhhhhhhhhHHHHHHHHHHhCCCC
Confidence            32 22222       278899998888753

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.60  E-value=4.7e-08  Score=74.14  Aligned_cols=83  Identities=14%  Similarity=0.074  Sum_probs=60.5

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CC
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PP  130 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~f  130 (158)
                      +++.+.+.....++.+|||+|||+|.++..+++.+++|+++|+++.  +++.++++...+ -++.+...|.       ..
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~--l~~~l~~~~~~~-~n~~i~~~D~l~~~~~~~~   85 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHK--LCKTTENKLVDH-DNFQVLNKDILQFKFPKNQ   85 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHH--HHHHHHHHTTTC-CSEEEECCCGGGCCCCSSC
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccc--hHHHHHHHhhcc-cchhhhhhhhhhccccccc
Confidence            3445555544557889999999999999999999999999999965  888888766433 2445554432       12


Q ss_pred             cEEE-ecCCCCCcc
Q 031506          131 SHIC-SRVLQDQSS  143 (158)
Q Consensus       131 D~Ii-~d~iy~~~~  143 (158)
                      .+.+ ++.+|+..+
T Consensus        86 ~~~vv~NLPYnIss   99 (235)
T d1qama_          86 SYKIFGNIPYNIST   99 (235)
T ss_dssp             CCEEEEECCGGGHH
T ss_pred             cceeeeeehhhhhH
Confidence            3444 999998765

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.54  E-value=7.9e-08  Score=75.40  Aligned_cols=84  Identities=12%  Similarity=0.076  Sum_probs=61.5

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc----C---CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV----G---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL  128 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~----g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~  128 (158)
                      ..|++.+........+.+|||.|||+|.+.+.+..+    +   .+++++|+++.  ++..++.|+..++........|.
T Consensus       103 ~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~--~~~~a~~~~~~~~~~~~~~~~d~  180 (328)
T d2f8la1         103 FIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDL--LISLALVGADLQRQKMTLLHQDG  180 (328)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHH--HHHHHHHHHHHHTCCCEEEESCT
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHH--HHHHHHHHHHHhhhhhhhhcccc
Confidence            345655544333345678999999999988876432    2   27999999965  89999999998887766655432


Q ss_pred             -------CCcEEEecCCCCC
Q 031506          129 -------PPSHICSRVLQDQ  141 (158)
Q Consensus       129 -------~fD~Ii~d~iy~~  141 (158)
                             +||+|+++|+|..
T Consensus       181 ~~~~~~~~fD~vi~NPPy~~  200 (328)
T d2f8la1         181 LANLLVDPVDVVISDLPVGY  200 (328)
T ss_dssp             TSCCCCCCEEEEEEECCCSE
T ss_pred             ccccccccccccccCCCCCC
Confidence                   8999998888853

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.9e-07  Score=70.03  Aligned_cols=76  Identities=11%  Similarity=0.046  Sum_probs=56.4

Q ss_pred             HHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcceE--EEc-------
Q 031506           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LMT-------  126 (158)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~~-------  126 (158)
                      +.++.......+.++|||+|||+|..++.+|+.   +.+|+.+|.++.  ..+.+++|++..++..++  ...       
T Consensus        48 g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~--~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~  125 (219)
T d2avda1          48 AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQ--PPELGRPLWRQAEAEHKIDLRLKPALETLD  125 (219)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSH--HHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred             HHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechh--HHHHHHHHHHhcCccceEEEEEeehhhcch
Confidence            333333233456789999999999999987763   459999999985  899999999988876433  322       


Q ss_pred             -------CCCCcEEEec
Q 031506          127 -------SLPPSHICSR  136 (158)
Q Consensus       127 -------d~~fD~Ii~d  136 (158)
                             +.+||+|+.|
T Consensus       126 ~~~~~~~~~~fD~ifiD  142 (219)
T d2avda1         126 ELLAAGEAGTFDVAVVD  142 (219)
T ss_dssp             HHHHTTCTTCEEEEEEC
T ss_pred             hhhhhcccCCccEEEEe
Confidence                   2279999944

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.9e-07  Score=70.07  Aligned_cols=83  Identities=12%  Similarity=0.106  Sum_probs=61.8

Q ss_pred             HHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC------CC
Q 031506           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL------PP  130 (158)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~------~f  130 (158)
                      ++.+.......++..|||+|+|+|.++..+++.+++|+++++++.  +++.++++...+..  +..+...|.      .+
T Consensus        10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~--l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~~   87 (278)
T d1zq9a1          10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPR--LVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF   87 (278)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHH--HHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCC
T ss_pred             HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccc--hhHHHHHHHhhhccccchhhhHHHHhhhhhhhh
Confidence            444544444446789999999999999999999999999999975  88988888766543  344554443      34


Q ss_pred             cEEEecCCCCCcc
Q 031506          131 SHICSRVLQDQSS  143 (158)
Q Consensus       131 D~Ii~d~iy~~~~  143 (158)
                      ..|+++.+|+...
T Consensus        88 ~~vV~NLPY~Iss  100 (278)
T d1zq9a1          88 DTCVANLPYQISS  100 (278)
T ss_dssp             SEEEEECCGGGHH
T ss_pred             hhhhcchHHHHHH
Confidence            5566999998754

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.38  E-value=1.3e-08  Score=77.76  Aligned_cols=81  Identities=16%  Similarity=0.158  Sum_probs=56.1

Q ss_pred             HHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-----C---CCc
Q 031506           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-----L---PPS  131 (158)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-----~---~fD  131 (158)
                      +.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.  +++.++++.... .++.+...|     +   .++
T Consensus        19 ~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~--l~~~l~~~~~~~-~n~~ii~~D~l~~~~~~~~~~   95 (245)
T d1yuba_          19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH--LFNLSSEKLKLN-TRVTLIHQDILQFQFPNKQRY   95 (245)
T ss_dssp             HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCS--SSSSSSCTTTTC-SEEEECCSCCTTTTCCCSSEE
T ss_pred             HHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeeccc--chhhhhhhhhhc-cchhhhhhhhhccccccceee
Confidence            33444333446779999999999999999999999999999986  777666554322 123333333     2   233


Q ss_pred             EEEecCCCCCcc
Q 031506          132 HICSRVLQDQSS  143 (158)
Q Consensus       132 ~Ii~d~iy~~~~  143 (158)
                      .|+++.+|+...
T Consensus        96 ~vv~NLPY~Ist  107 (245)
T d1yuba_          96 KIVGNIPYHLST  107 (245)
T ss_dssp             EEEEECCSSSCH
T ss_pred             eEeeeeehhhhH
Confidence            445999998775

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=4.8e-07  Score=67.41  Aligned_cols=65  Identities=15%  Similarity=0.136  Sum_probs=52.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcC--------------CCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTS--------------LPP  130 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d--------------~~f  130 (158)
                      +.++|||+|||+|..++.+++.   +.+|+.+|.++.  +++.+++|++..++..  ++...+              .+|
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~--~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPD--YAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHH--HHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHH--HHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence            5679999999999999988764   569999999964  9999999999988754  333321              168


Q ss_pred             cEEEec
Q 031506          131 SHICSR  136 (158)
Q Consensus       131 D~Ii~d  136 (158)
                      |+|+.|
T Consensus       134 D~ifiD  139 (214)
T d2cl5a1         134 DMVFLD  139 (214)
T ss_dssp             EEEEEC
T ss_pred             ceeeec
Confidence            999966

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.32  E-value=2.3e-06  Score=64.26  Aligned_cols=75  Identities=12%  Similarity=0.026  Sum_probs=56.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcceE--EEc---------------CC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LMT---------------SL  128 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~~---------------d~  128 (158)
                      .+.++|||+|+++|..++.+|+.   +.+|+.+|.++.  ..+.+++|++..+...++  ...               +.
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~--~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~  135 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKE--NYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG  135 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCH--HHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccch--hHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCC
Confidence            36789999999999999987753   469999999986  889999999998876433  322               22


Q ss_pred             CCcEEE--ecCCCCCccHH
Q 031506          129 PPSHIC--SRVLQDQSSLR  145 (158)
Q Consensus       129 ~fD~Ii--~d~iy~~~~~~  145 (158)
                      +||+|+  +|--+|...++
T Consensus       136 ~fD~iFiDa~k~~y~~~~e  154 (227)
T d1susa1         136 SYDFIFVDADKDNYLNYHK  154 (227)
T ss_dssp             CBSEEEECSCSTTHHHHHH
T ss_pred             ceeEEEeccchhhhHHHHH
Confidence            799999  55444443333

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=2.3e-07  Score=70.94  Aligned_cols=82  Identities=9%  Similarity=0.053  Sum_probs=57.2

Q ss_pred             HHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-CC-------
Q 031506           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-PP-------  130 (158)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-~f-------  130 (158)
                      .+.+.+.....++..|||+|||+|.++..+++.+.+|+++|+++.  +++.++++...+ .+..+...|. .+       
T Consensus        10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~--l~~~L~~~~~~~-~~~~ii~~D~l~~~~~~~~~   86 (252)
T d1qyra_          10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRD--LAARLQTHPFLG-PKLTIYQQDAMTFNFGELAE   86 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHH--HHHHHHTCTTTG-GGEEEECSCGGGCCHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccc--hhHHHHHHhhhc-cchhHHhhhhhhhccccccc
Confidence            334444334446789999999999999999999999999999965  888877643322 2344444432 11       


Q ss_pred             -----cEEEecCCCCCcc
Q 031506          131 -----SHICSRVLQDQSS  143 (158)
Q Consensus       131 -----D~Ii~d~iy~~~~  143 (158)
                           -.|+++.+|+...
T Consensus        87 ~~~~~~~vvgNlPY~Iss  104 (252)
T d1qyra_          87 KMGQPLRVFGNLPYNIST  104 (252)
T ss_dssp             HHTSCEEEEEECCTTTHH
T ss_pred             ccCCCeEEEecchHHHHH
Confidence                 2344999999876

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.16  E-value=2.3e-06  Score=68.81  Aligned_cols=49  Identities=22%  Similarity=0.167  Sum_probs=42.7

Q ss_pred             CCCeEEEeccCCCHHHHHHhh-cCC-EEEEEecCChHHHHHHHHHHHHHcCCc
Q 031506           70 SGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN  120 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~  120 (158)
                      ++.+|||..||||+.|+..++ .++ +|++.|+++.  +++.+++|++.|+..
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~--A~~~i~~N~~lN~~~   95 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISED--AYELMKRNVMLNFDG   95 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHH--HHHHHHHHHHHHCCS
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHH--HHHHHHHHHHhcCcc
Confidence            678999999999999996655 455 8999999965  999999999999764

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.14  E-value=2.3e-06  Score=62.67  Aligned_cols=71  Identities=11%  Similarity=-0.027  Sum_probs=54.8

Q ss_pred             cCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------------CCCc
Q 031506           67 YRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------------LPPS  131 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------------~~fD  131 (158)
                      ...++..+||++||+|..+..+++.  +.+|+++|.++.  |++.++++++..+.++.+...+             .+||
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~--~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vd   97 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSE--VLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVD   97 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHH--HHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEE
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHH--HHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcc
Confidence            3456789999999999998876664  459999999964  9999999998776555555431             2799


Q ss_pred             EEEecCCC
Q 031506          132 HICSRVLQ  139 (158)
Q Consensus       132 ~Ii~d~iy  139 (158)
                      .|+.|.=+
T Consensus        98 gIl~DlGv  105 (192)
T d1m6ya2          98 GILMDLGV  105 (192)
T ss_dssp             EEEEECSC
T ss_pred             eeeeccch
Confidence            99977543

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.89  E-value=4.1e-06  Score=61.06  Aligned_cols=82  Identities=6%  Similarity=-0.156  Sum_probs=50.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCCCCcEE
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSLPPSHI  133 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~~fD~I  133 (158)
                      -++++|.......++.+|||.|||+|.+.+.+.+.   ..++++.|+++.  ++..+++|...++-... .....+||+|
T Consensus         6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~--~~~~~~~~~~~~~~~~~-~~~~~~fd~i   82 (223)
T d2ih2a1           6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK--ALDLPPWAEGILADFLL-WEPGEAFDLI   82 (223)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTT--TCCCCTTEEEEESCGGG-CCCSSCEEEE
T ss_pred             HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHH--HHhhcccceeeeeehhc-ccccccccee
Confidence            45677776555557889999999999887765442   347999999985  43322211101100000 0012389999


Q ss_pred             EecCCCCC
Q 031506          134 CSRVLQDQ  141 (158)
Q Consensus       134 i~d~iy~~  141 (158)
                      +++|+|..
T Consensus        83 i~npP~~~   90 (223)
T d2ih2a1          83 LGNPPYGI   90 (223)
T ss_dssp             EECCCCCC
T ss_pred             cccCcccc
Confidence            98888754

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=2.8e-05  Score=57.43  Aligned_cols=79  Identities=24%  Similarity=0.381  Sum_probs=51.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc-------CCCCcEEEecCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT-------SLPPSHICSRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~-------d~~fD~Ii~d~i  138 (158)
                      +.+.+++|+|+|.|++|+.+|-..  .+|+++|-...  =+..+++-+...++. +.+...       +.+||+|++=.+
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~K--K~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~  141 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGK--RVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF  141 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHH--HHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchH--HHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhh
Confidence            356799999999999999888754  49999999974  445555544444442 444432       237999985444


Q ss_pred             CCCccHHHHHHHHH
Q 031506          139 QDQSSLRLIIIEVG  152 (158)
Q Consensus       139 y~~~~~~~ll~tl~  152 (158)
                         ..++.++....
T Consensus       142 ---~~~~~ll~~~~  152 (207)
T d1jsxa_         142 ---ASLNDMVSWCH  152 (207)
T ss_dssp             ---SSHHHHHHHHT
T ss_pred             ---cCHHHHHHHHH
Confidence               23444444433

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.78  E-value=2.6e-05  Score=59.27  Aligned_cols=70  Identities=19%  Similarity=0.192  Sum_probs=52.5

Q ss_pred             CeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc---CC-------cceEEEcC---------CCCcE
Q 031506           72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN---KL-------NCRLLMTS---------LPPSH  132 (158)
Q Consensus        72 ~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n---~~-------~~~~~~~d---------~~fD~  132 (158)
                      .+|||+=||.|.-++.+|..|++|++++.++.  +...++.+++..   .-       ++++...|         ..||+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~--l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv  167 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPV--VAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHH--HHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHH--HHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence            48999999999999999999999999999964  555566555432   11       13343332         27999


Q ss_pred             EEecCCCCCcc
Q 031506          133 ICSRVLQDQSS  143 (158)
Q Consensus       133 Ii~d~iy~~~~  143 (158)
                      |+.||+|....
T Consensus       168 IYlDPMFp~~~  178 (250)
T d2oyra1         168 VYLDPMFPHKQ  178 (250)
T ss_dssp             EEECCCCCCCC
T ss_pred             EEECCCCcccc
Confidence            99999997654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.62  E-value=8.1e-05  Score=56.99  Aligned_cols=85  Identities=11%  Similarity=0.029  Sum_probs=56.5

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHc-----------CCcceEEEcC--------CC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN-----------KLNCRLLMTS--------LP  129 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n-----------~~~~~~~~~d--------~~  129 (158)
                      +.++||-+|+|.|.....+.+... +|+++|+++.  +++.+++-...+           .-++++...|        .+
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~--Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDED--VIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHH--HHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHH--HHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            567999999999998887777654 8999999964  999888654322           1234444443        38


Q ss_pred             CcEEEecCCCCCccH-----HHHHHHHHHHhc
Q 031506          130 PSHICSRVLQDQSSL-----RLIIIEVGIILL  156 (158)
Q Consensus       130 fD~Ii~d~iy~~~~~-----~~ll~tl~~ll~  156 (158)
                      ||+|+.|+.......     .++.+.++..|.
T Consensus       150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~  181 (276)
T d1mjfa_         150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALN  181 (276)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEE
T ss_pred             CCEEEEeCCCCCCCcccccCHHHHHhhHhhcC
Confidence            999997765432221     345555555543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.53  E-value=0.00011  Score=59.19  Aligned_cols=84  Identities=12%  Similarity=-0.018  Sum_probs=60.7

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---------------CCEEEEEecCChHHHHHHHHHHHHHcCCc
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---------------GSNVTLTDDSNRIEVLKNMRRVCEMNKLN  120 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---------------g~~v~~tD~~~~~~~l~~~~~n~~~n~~~  120 (158)
                      .-++++|........+.+|+|-.||||.+-+.+.++               ...+.+.|+++.  +...++.|+..++..
T Consensus       148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~--~~~la~~n~~l~g~~  225 (425)
T d2okca1         148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPL--VVTLASMNLYLHGIG  225 (425)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHH--HHHHHHHHHHHTTCC
T ss_pred             hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHH--HHHHHHhhhhhcCCc
Confidence            345666666444446789999999999998876553               125999999965  888999999887754


Q ss_pred             ---ceEEEcC-------CCCcEEEecCCCCC
Q 031506          121 ---CRLLMTS-------LPPSHICSRVLQDQ  141 (158)
Q Consensus       121 ---~~~~~~d-------~~fD~Ii~d~iy~~  141 (158)
                         ......|       .+||+|+++|+|..
T Consensus       226 ~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~  256 (425)
T d2okca1         226 TDRSPIVCEDSLEKEPSTLVDVILANPPFGT  256 (425)
T ss_dssp             SSCCSEEECCTTTSCCSSCEEEEEECCCSSC
T ss_pred             cccceeecCchhhhhcccccceEEecCCCCC
Confidence               2233332       27999999999853

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.52  E-value=0.00014  Score=56.70  Aligned_cols=85  Identities=11%  Similarity=0.046  Sum_probs=58.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHH-c-----CCcceEEEcC---------CCCcE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM-N-----KLNCRLLMTS---------LPPSH  132 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~-n-----~~~~~~~~~d---------~~fD~  132 (158)
                      ..++||.+|.|.|.....+.+..  .+|+++|+++.  +++.+++.... +     .-++++...|         .+||+
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~--Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGE--LVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHH--HHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHH--HHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            56799999999999888776653  49999999964  99999887642 1     2234555444         38999


Q ss_pred             EEecC---CCCCcc-----HHHHHHHHHHHhc
Q 031506          133 ICSRV---LQDQSS-----LRLIIIEVGIILL  156 (158)
Q Consensus       133 Ii~d~---iy~~~~-----~~~ll~tl~~ll~  156 (158)
                      |+.|+   ......     ..++++.++..|.
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~  186 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLN  186 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcC
Confidence            99554   332211     2456666666654

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.40  E-value=0.00029  Score=52.82  Aligned_cols=78  Identities=12%  Similarity=0.023  Sum_probs=52.3

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----CCcEEE-ecCCCCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----PPSHIC-SRVLQDQ  141 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----~fD~Ii-~d~iy~~  141 (158)
                      ...+|||+|||+|..++.++++..  ++++.|+.   ++++...     ..-++++...|.     ..|+|+ +.++++.
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp---~vi~~~~-----~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~  152 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLP---QVIENAP-----PLSGIEHVGGDMFASVPQGDAMILKAVCHNW  152 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH---HHHTTCC-----CCTTEEEEECCTTTCCCCEEEEEEESSGGGS
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch---hhhhccC-----CCCCeEEecCCcccccccceEEEEehhhhhC
Confidence            347899999999999998887744  88888884   3543211     012344555443     569999 9999776


Q ss_pred             cc--HHHHHHHHHHHh
Q 031506          142 SS--LRLIIIEVGIIL  155 (158)
Q Consensus       142 ~~--~~~ll~tl~~ll  155 (158)
                      ++  ...+++.++.-|
T Consensus       153 ~de~~~~iL~~~~~aL  168 (244)
T d1fp1d2         153 SDEKCIEFLSNCHKAL  168 (244)
T ss_dssp             CHHHHHHHHHHHHHHE
T ss_pred             CHHHHHHHHHHHHHHc
Confidence            55  445666665544

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.37  E-value=0.0002  Score=53.75  Aligned_cols=78  Identities=13%  Similarity=0.172  Sum_probs=53.9

Q ss_pred             CCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----CCcEEE-ecCCCCCc
Q 031506           71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----PPSHIC-SRVLQDQS  142 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----~fD~Ii-~d~iy~~~  142 (158)
                      ..+|||+|||+|..++.++++.  .++++.|+.   ++++.+..     .-++++...|.     .+|+++ ..++++-+
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp---~vi~~~~~-----~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~  152 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP---QVVENLSG-----SNNLTYVGGDMFTSIPNADAVLLKYILHNWT  152 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH---HHHTTCCC-----BTTEEEEECCTTTCCCCCSEEEEESCGGGSC
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH---HHHHhCcc-----cCceEEEecCcccCCCCCcEEEEEeecccCC
Confidence            3689999999999999887764  499999994   35543211     12355555554     789999 99997765


Q ss_pred             cH--HHHHHHHHHHhc
Q 031506          143 SL--RLIIIEVGIILL  156 (158)
Q Consensus       143 ~~--~~ll~tl~~ll~  156 (158)
                      +-  ..+|+.++.-|.
T Consensus       153 d~~~~~iL~~~~~al~  168 (244)
T d1fp2a2         153 DKDCLRILKKCKEAVT  168 (244)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHcC
Confidence            53  456666665443

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00041  Score=53.27  Aligned_cols=70  Identities=14%  Similarity=0.082  Sum_probs=53.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----------CCCcEE
Q 031506           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-----------LPPSHI  133 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-----------~~fD~I  133 (158)
                      .++.+|||++||.|.=+..++.+   ...|++.|.+..  -++.+++|++..++. +.+...|           .+||.|
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~--R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~V  170 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK--RLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI  170 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHH--HHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEE
Confidence            46789999999999977765543   348999999965  788999999998875 4444432           169999


Q ss_pred             EecCCCC
Q 031506          134 CSRVLQD  140 (158)
Q Consensus       134 i~d~iy~  140 (158)
                      +.|++..
T Consensus       171 L~DaPCS  177 (293)
T d2b9ea1         171 LLDPSCS  177 (293)
T ss_dssp             EECCCCC
T ss_pred             eecCccc
Confidence            9777643

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00084  Score=51.24  Aligned_cols=81  Identities=10%  Similarity=0.024  Sum_probs=59.2

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC---
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---  127 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---  127 (158)
                      .+|...+..+ .   ..++.+|||++||.|.=+..++..+  ..|++.|.++.  -+..+++|++..+........+   
T Consensus        89 ~sS~l~~~~L-~---~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~--R~~~l~~~~~r~g~~~~~~~~~~~~  162 (284)
T d1sqga2          89 ASAQGCMTWL-A---PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQ--RLSRVYDNLKRLGMKATVKQGDGRY  162 (284)
T ss_dssp             HHHHTHHHHH-C---CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTT--THHHHHHHHHHTTCCCEEEECCTTC
T ss_pred             cccccccccc-C---ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchh--hhhhHhhhhhcccccceeeeccccc
Confidence            3444444433 2   2467899999999998888777654  37999999986  7889999999988875444331   


Q ss_pred             -------CCCcEEEecCCC
Q 031506          128 -------LPPSHICSRVLQ  139 (158)
Q Consensus       128 -------~~fD~Ii~d~iy  139 (158)
                             ..||.|+.|++.
T Consensus       163 ~~~~~~~~~fd~IL~DaPC  181 (284)
T d1sqga2         163 PSQWCGEQQFDRILLDAPC  181 (284)
T ss_dssp             THHHHTTCCEEEEEEECCC
T ss_pred             cchhcccccccEEEEeccc
Confidence                   169999976654

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00023  Score=58.75  Aligned_cols=84  Identities=8%  Similarity=-0.063  Sum_probs=59.8

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--------------------CCEEEEEecCChHHHHHHHHHHHH
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------------------GSNVTLTDDSNRIEVLKNMRRVCE  115 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--------------------g~~v~~tD~~~~~~~l~~~~~n~~  115 (158)
                      ..++++|........+.+|+|-.||||.+-+.+.++                    ...+++.|+++.  +...++.|+-
T Consensus       150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~--~~~la~~nl~  227 (524)
T d2ar0a1         150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG--TRRLALMNCL  227 (524)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH--HHHHHHHHHH
T ss_pred             cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHH--HHHHHHHHHH
Confidence            445677766544556779999999999998866542                    125899999965  8889999998


Q ss_pred             HcCCcce------EEEc---------CCCCcEEEecCCCCC
Q 031506          116 MNKLNCR------LLMT---------SLPPSHICSRVLQDQ  141 (158)
Q Consensus       116 ~n~~~~~------~~~~---------d~~fD~Ii~d~iy~~  141 (158)
                      ..+....      ....         ..+||+|+++|+|..
T Consensus       228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~  268 (524)
T d2ar0a1         228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS  268 (524)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTT
T ss_pred             hhcccccccccchhhhhhhhhhcccccccceeEEecCCccc
Confidence            8765321      1111         127999999998853

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.11  E-value=0.00079  Score=51.27  Aligned_cols=66  Identities=14%  Similarity=0.065  Sum_probs=50.1

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHHHHc-----CCcceEEEcCC---------CCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRLLMTSL---------PPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~-g-~~v~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~~d~---------~fD~I  133 (158)
                      ..++||-+|.|.|.....+.+. + .+|+++|+++.  +++.+++....+     ..++++...|.         +||+|
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~--Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGK--VIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHH--HHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHH--HHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            5679999999999999988875 3 49999999964  899888866432     23455555543         89999


Q ss_pred             EecC
Q 031506          134 CSRV  137 (158)
Q Consensus       134 i~d~  137 (158)
                      +.|+
T Consensus       153 i~D~  156 (274)
T d1iy9a_         153 MVDS  156 (274)
T ss_dssp             EESC
T ss_pred             EEcC
Confidence            9554

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.08  E-value=0.0008  Score=50.39  Aligned_cols=65  Identities=18%  Similarity=0.327  Sum_probs=43.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCCh-HHHHHHHHHHHHHcCCcceEEEc---------C--CCCcEEEe
Q 031506           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR-IEVLKNMRRVCEMNKLNCRLLMT---------S--LPPSHICS  135 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~-~~~l~~~~~n~~~n~~~~~~~~~---------d--~~fD~Ii~  135 (158)
                      ...+++|+|+|.|++|+.+|-.  ..+|+++|-+.. ...++.+.+.+.+++.  .+...         +  .+||+|++
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~--~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENT--TFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSE--EEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCc--EEEeehhhhccccccccccceEEEE
Confidence            4578999999999999988764  349999999974 2344444444444432  22221         1  27999995


Q ss_pred             c
Q 031506          136 R  136 (158)
Q Consensus       136 d  136 (158)
                      =
T Consensus       148 R  148 (239)
T d1xdza_         148 R  148 (239)
T ss_dssp             E
T ss_pred             h
Confidence            4

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.07  E-value=0.00029  Score=50.82  Aligned_cols=42  Identities=21%  Similarity=0.105  Sum_probs=30.2

Q ss_pred             CCCeEEEeccCCCH----HHHHHhhc----C--CEEEEEecCChHHHHHHHHHH
Q 031506           70 SGANVVELGAGTSL----PGLVAAKV----G--SNVTLTDDSNRIEVLKNMRRV  113 (158)
Q Consensus        70 ~~~~vLELG~GtGl----~~i~~a~~----g--~~v~~tD~~~~~~~l~~~~~n  113 (158)
                      +..||++.|||||-    +++++...    +  .+|++||+++.  +++.+++.
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~--~l~~A~~g   75 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTE--VLEKARSG   75 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHH--HHHHHHHT
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChH--HhhHhhcC
Confidence            45699999999995    44444322    1  27999999975  88887754

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.05  E-value=0.00071  Score=50.36  Aligned_cols=79  Identities=11%  Similarity=-0.001  Sum_probs=50.5

Q ss_pred             CCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----CCcEEE-ecCCCCCc
Q 031506           71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----PPSHIC-SRVLQDQS  142 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----~fD~Ii-~d~iy~~~  142 (158)
                      .++|||+|||+|..++.++++.  .++++.|+.+   .++.++.     ..++.....|.     ..|+++ ..++++.+
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~---vi~~~~~-----~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~  153 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH---VIEDAPS-----YPGVEHVGGDMFVSIPKADAVFMKWICHDWS  153 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT---TTTTCCC-----CTTEEEEECCTTTCCCCCSCEECSSSSTTSC
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH---hhhhccc-----CCceEEecccccccCCCcceEEEEEEeecCC
Confidence            4689999999999999888774  4999999976   3332111     12244444443     456666 77775543


Q ss_pred             --cHHHHHHHHHHHhcC
Q 031506          143 --SLRLIIIEVGIILLS  157 (158)
Q Consensus       143 --~~~~ll~tl~~ll~~  157 (158)
                        ....+++.++.-+.+
T Consensus       154 d~~~~~iL~~~~~al~p  170 (243)
T d1kyza2         154 DEHCLKFLKNCYEALPD  170 (243)
T ss_dssp             HHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence              355566666655543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.03  E-value=0.00078  Score=51.92  Aligned_cols=85  Identities=12%  Similarity=0.030  Sum_probs=56.4

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHc-----CCcceEEEcC---------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRLLMTS---------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~~d---------~~fD~I  133 (158)
                      ..++||-+|.|.|.....+.+..  .+|+++|+++.  +++.+++-...+     .-++++...|         .+||+|
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~--Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGL--VIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHH--HHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHH--HHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            46799999999999888777754  48999999964  899888765543     2234555443         289999


Q ss_pred             EecCCCC---Cc---cHHHHHHHHHHHhc
Q 031506          134 CSRVLQD---QS---SLRLIIIEVGIILL  156 (158)
Q Consensus       134 i~d~iy~---~~---~~~~ll~tl~~ll~  156 (158)
                      +.|+.-.   ..   ...++.+.++..|.
T Consensus       167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~  195 (295)
T d1inla_         167 IIDSTDPTAGQGGHLFTEEFYQACYDALK  195 (295)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEE
T ss_pred             EEcCCCCCcCchhhhccHHHHHHHHhhcC
Confidence            9664321   11   13555666665543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0017  Score=49.73  Aligned_cols=67  Identities=12%  Similarity=0.003  Sum_probs=49.9

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHc-----CCcceEEEcCC---------CCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRLLMTSL---------PPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~~d~---------~fD~I  133 (158)
                      ..++||=+|.|.|.....+.+..  .+|+++|+++.  +++.+++-...+     .-++++...|.         +||+|
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~--Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDED--VIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHH--HHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHH--HHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            56799999999999998887763  49999999964  999888765432     23445554442         89999


Q ss_pred             EecCC
Q 031506          134 CSRVL  138 (158)
Q Consensus       134 i~d~i  138 (158)
                      +.|+.
T Consensus       156 i~D~~  160 (285)
T d2o07a1         156 ITDSS  160 (285)
T ss_dssp             EEECC
T ss_pred             EEcCC
Confidence            97653

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.002  Score=49.93  Aligned_cols=44  Identities=11%  Similarity=0.117  Sum_probs=35.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHH
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVC  114 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~  114 (158)
                      .++..|||+|.|.|.++..+...+  .+|++++.++.  .++.+++..
T Consensus        42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~--~~~~L~~~~   87 (322)
T d1i4wa_          42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSS--LYKFLNAKF   87 (322)
T ss_dssp             TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHH--HHHHHHHHT
T ss_pred             cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHH--HHHHHHHhc
Confidence            356789999999999999887653  38999999975  777777654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.65  E-value=0.0015  Score=50.63  Aligned_cols=67  Identities=13%  Similarity=0.027  Sum_probs=49.5

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcC-----CcceEEEcC---------CCCcEE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK-----LNCRLLMTS---------LPPSHI  133 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~-----~~~~~~~~d---------~~fD~I  133 (158)
                      ..++||-+|.|.|.+...+.+..  .+|+++|+++.  +++.+++-...+.     -++++...|         .+||+|
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~--Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEM--VIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHH--HHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHH--HHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            46799999999999998887764  48999999964  9999888664432     223444333         389999


Q ss_pred             EecCC
Q 031506          134 CSRVL  138 (158)
Q Consensus       134 i~d~i  138 (158)
                      +.|+.
T Consensus       184 I~D~~  188 (312)
T d2b2ca1         184 ITDSS  188 (312)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            96653

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.46  E-value=0.0026  Score=48.64  Aligned_cols=67  Identities=9%  Similarity=0.054  Sum_probs=49.0

Q ss_pred             CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHc-----CCcceEEEcC----------CCCcE
Q 031506           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRLLMTS----------LPPSH  132 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~~d----------~~fD~  132 (158)
                      +.++||=+|-|.|.....+.+..  .+|+++|+++.  +++.+++-...+     .-+.++...|          .+||+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~--Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKM--VVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHH--HHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHH--HHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence            56799999999999999888764  38999999964  999888855332     2234444332          27999


Q ss_pred             EEecCC
Q 031506          133 ICSRVL  138 (158)
Q Consensus       133 Ii~d~i  138 (158)
                      |+.|+.
T Consensus       158 Ii~D~~  163 (290)
T d1xj5a_         158 VIVDSS  163 (290)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            996654

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.27  E-value=0.016  Score=44.41  Aligned_cols=82  Identities=12%  Similarity=0.022  Sum_probs=56.3

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcce-EEEc--
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR-LLMT--  126 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~-~~~~--  126 (158)
                      +.+-.++-+++.   ..++.+|||++||.|.=+..++..   ...+++.|.++.  -++.+++|++..+.... ....  
T Consensus       102 D~aS~l~~~~l~---~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~--r~~~l~~~~~r~~~~~i~~~~~d~  176 (313)
T d1ixka_         102 EASSMYPPVALD---PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDEN--RLRETRLNLSRLGVLNVILFHSSS  176 (313)
T ss_dssp             CHHHHHHHHHHC---CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHH--HHHHHHHHHHHHTCCSEEEESSCG
T ss_pred             cccccchhhccc---CCccceeeecccchhhhhHhhhhhcccccceeeeccCHH--HHHHHHHHHHHHHhhccccccccc
Confidence            444444444443   246789999999999877766543   347999999965  78888999988776432 2222  


Q ss_pred             ------CCCCcEEEecCCC
Q 031506          127 ------SLPPSHICSRVLQ  139 (158)
Q Consensus       127 ------d~~fD~Ii~d~iy  139 (158)
                            +..||.|+.|++.
T Consensus       177 ~~~~~~~~~fD~ILvDaPC  195 (313)
T d1ixka_         177 LHIGELNVEFDKILLDAPC  195 (313)
T ss_dssp             GGGGGGCCCEEEEEEECCT
T ss_pred             cccccccccccEEEEcccc
Confidence                  2279999966653

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.19  E-value=0.0063  Score=44.15  Aligned_cols=57  Identities=19%  Similarity=0.155  Sum_probs=46.7

Q ss_pred             HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 031506           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE  115 (158)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~  115 (158)
                      +.|.+++.+.. ..+|..|||--||+|..++++.+.|.+.+++|+++.  .++.++++++
T Consensus       199 ~~L~~~lI~~~-s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~--y~~~a~~Rl~  255 (256)
T d1g60a_         199 RDLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAE--YVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHH
T ss_pred             hhHHHHHHHHh-CCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHH--HHHHHHHHHc
Confidence            45666665533 246789999999999999999999999999999964  8888888765

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.14  E-value=0.0091  Score=43.84  Aligned_cols=60  Identities=18%  Similarity=0.220  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM  116 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~  116 (158)
                      -...|.+++.+.. ..++..|||--||+|..++++.+.|.+.+++|+++.  .++.+++++..
T Consensus       192 kP~~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~--y~~~a~~Ri~~  251 (279)
T d1eg2a_         192 KPAAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPV--FKEYYQKQLTF  251 (279)
T ss_dssp             CCHHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTH--HHHHHHHHHHH
T ss_pred             cchhHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHH--HHHHHHHHHHH
Confidence            4566777666643 347889999999999999999999999999999985  88888887764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.79  E-value=0.0052  Score=45.94  Aligned_cols=58  Identities=17%  Similarity=0.094  Sum_probs=45.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc
Q 031506           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN  117 (158)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n  117 (158)
                      .|.+++.+.. ..++..|||--||+|..++++.+.|.+.+++|+++.  .++.+++.+..+
T Consensus       238 ~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~--y~~~a~~Rl~~~  295 (320)
T d1booa_         238 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPE--YVAASAFRFLDN  295 (320)
T ss_dssp             HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHH--HHHHHHGGGSCS
T ss_pred             HHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHH--HHHHHHHHHHhc
Confidence            5555555433 237789999999999999999999999999999964  888887766543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.47  E-value=0.016  Score=39.88  Aligned_cols=44  Identities=18%  Similarity=0.205  Sum_probs=33.5

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHh-hcCCEEEEEecCChHHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~~  112 (158)
                      ...++.+||-+||| .|+.++.++ ..|++|+++|.++.  -++.+++
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~--k~~~a~~   69 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR--KREDAMK   69 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST--THHHHHH
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchh--HHHHhhc
Confidence            44578899999998 777777655 46899999999975  5555543

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.19  E-value=0.015  Score=41.24  Aligned_cols=66  Identities=12%  Similarity=0.018  Sum_probs=47.0

Q ss_pred             CCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-------------CCCCcEEE
Q 031506           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-------------SLPPSHIC  134 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-------------d~~fD~Ii  134 (158)
                      ..++..++|..+|.|-.+..+.+.+.+|++.|.++  ++++.+++.   ..-...+...             ..++|.|+
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~--~ai~~a~~~---~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl   90 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDP--EAVARAKGL---HLPGLTVVQGNFRHLKRHLAALGVERVDGIL   90 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHT---CCTTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhh--hHHHHHhhc---cccceeEeehHHHHHHHHHHHcCCCccCEEE
Confidence            45778999999999988887777778999999996  488877642   2222333222             12689999


Q ss_pred             ecCC
Q 031506          135 SRVL  138 (158)
Q Consensus       135 ~d~i  138 (158)
                      +|.=
T Consensus        91 ~DLG   94 (182)
T d1wg8a2          91 ADLG   94 (182)
T ss_dssp             EECS
T ss_pred             EEcc
Confidence            7763

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.06  E-value=0.021  Score=43.01  Aligned_cols=68  Identities=13%  Similarity=0.104  Sum_probs=48.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHhhcCCE-EEEEecCChHHHHHHHHHHHHHcCCcceEEEc---CC-CCcEEE-ecCCC
Q 031506           69 FSGANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT---SL-PPSHIC-SRVLQ  139 (158)
Q Consensus        69 ~~~~~vLELG~GtGl~~i~~a~~g~~-v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~---d~-~fD~Ii-~d~iy  139 (158)
                      ..+.+||||-||.|.+++.+.+.|.+ |.++|+++.  +++..+.|.... ...++...   +. .+|+|+ .-|+.
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~--a~~~~~~N~~~~-~~~Di~~~~~~~~~~~Dll~ggpPCq   82 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKY--AQEVYEMNFGEK-PEGDITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHH--HHHHHHHHHSCC-CBSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHH--HHHHHHHHCCCC-CcCchhcCchhhcceeeeeecccccc
Confidence            46789999999999999999999984 667899965  888888886421 11111111   11 799999 66653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=95.02  E-value=0.0084  Score=44.86  Aligned_cols=87  Identities=7%  Similarity=-0.052  Sum_probs=53.8

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC---------------------------------------
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---------------------------------------   93 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~---------------------------------------   93 (158)
                      .++..|+..+... ..-.+..++|--||+|.+.|.+|....                                       
T Consensus        34 Laa~il~~al~l~-~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~  112 (249)
T d1o9ga_          34 LATEIFQRALARL-PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERR  112 (249)
T ss_dssp             HHHHHHHHHHHTS-SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhh-cCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhcccc
Confidence            3556666655432 223445799999999999997665321                                       


Q ss_pred             ---EEEEEecCChHHHHHHH---HHHHHHcCCcc--eEEEcCC-------------CCcEEEecCCCCCc
Q 031506           94 ---NVTLTDDSNRIEVLKNM---RRVCEMNKLNC--RLLMTSL-------------PPSHICSRVLQDQS  142 (158)
Q Consensus        94 ---~v~~tD~~~~~~~l~~~---~~n~~~n~~~~--~~~~~d~-------------~fD~Ii~d~iy~~~  142 (158)
                         .+++.|.++  ++++.+   +.|+...++..  .+...|.             .+++||+||+|-.-
T Consensus       113 ~~~~i~G~D~d~--~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGER  180 (249)
T d1o9ga_         113 EQSERFGKPSYL--EAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGER  180 (249)
T ss_dssp             HHHHHHCCHHHH--HHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGS
T ss_pred             ccCCccccccCH--HHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCcccc
Confidence               234555553  366655   46777777653  3333332             46889999998653

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.91  E-value=0.061  Score=39.58  Aligned_cols=58  Identities=21%  Similarity=0.356  Sum_probs=44.4

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++.+|=-|++.|+   ++..+++.|++|+++|.++.  .++.+.+.++..+.++.....|
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~--~l~~~~~~~~~~g~~~~~~~~D   62 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE--ALEKAEASVREKGVEARSYVCD   62 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHTTTSCEEEEECC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEcc
Confidence            4689999999988775   44567788999999999864  7777777777776666666554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.19  Score=36.55  Aligned_cols=60  Identities=22%  Similarity=0.258  Sum_probs=45.1

Q ss_pred             ccCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           66 RYRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        66 ~~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      +..+.|+.+|=-|++.|+   ++..+++.|++|+++|.++.  -++.+.+++...+.++.....|
T Consensus         2 ~~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~--~l~~~~~~~~~~~~~~~~~~~D   64 (244)
T d1yb1a_           2 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH--GLEETAAKCKGLGAKVHTFVVD   64 (244)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEee
Confidence            346789999999999885   44456788999999999864  7777777777666555555554

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.037  Score=39.02  Aligned_cols=49  Identities=20%  Similarity=0.125  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCC
Q 031506           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSN  102 (158)
Q Consensus        54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~  102 (158)
                      ++.-|.+-..+.....++.+||||||+.|..+..+.+. +  ..|+++|+.+
T Consensus         6 aafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~   57 (180)
T d1ej0a_           6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             HHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence            55666665444444457789999999999999977653 3  3899999986

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.32  E-value=0.11  Score=38.20  Aligned_cols=60  Identities=10%  Similarity=0.071  Sum_probs=43.8

Q ss_pred             ccCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           66 RYRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        66 ~~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      +..++++++|=-|++.|+   ++..+++.|++|+++|.++.  -++.+.+.+...+.++.....|
T Consensus         3 ~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~--~l~~~~~~~~~~~~~~~~~~~D   65 (259)
T d1xq1a_           3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY--ELNECLSKWQKKGFQVTGSVCD   65 (259)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCceEEEecc
Confidence            345689999999998875   44466788999999999864  6676666666666555555443

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.09  E-value=0.19  Score=36.83  Aligned_cols=60  Identities=13%  Similarity=0.200  Sum_probs=45.6

Q ss_pred             cCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|.+.. +.++.+.+.++.++..+.....|
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~-~~~~~~~~~~~~~g~~~~~~~~D   76 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST-ESAEEVVAAIKKNGSDAACVKAN   76 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch-HHHHHHHHHHHhhCCceeeEeCC
Confidence            35789999999998885   45567788999999999873 56777777777777666666554

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=93.85  E-value=0.16  Score=37.49  Aligned_cols=60  Identities=17%  Similarity=0.164  Sum_probs=43.5

Q ss_pred             eEEEeccCCCHHHHHHhhcCCE-EEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC---------CCcEEE-ecCCC
Q 031506           73 NVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL---------PPSHIC-SRVLQ  139 (158)
Q Consensus        73 ~vLELG~GtGl~~i~~a~~g~~-v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~---------~fD~Ii-~d~iy  139 (158)
                      +||||-||.|.+++.+.+.|.+ +.++|+++.  +.+..+.|..     ..+...|.         ..|+++ .-|+.
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~--a~~~~~~N~~-----~~~~~~Di~~~~~~~~~~~dll~~g~PCq   72 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKS--IWKTYESNHS-----AKLIKGDISKISSDEFPKCDGIIGGPPCQ   72 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHH--HHHHHHHHCC-----SEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHH--HHHHHHHHCC-----CCCccCChhhCCHhHcccccEEeeccccc
Confidence            7999999999999988888985 569999964  7776676642     22222222         789999 65553

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.48  E-value=0.16  Score=37.15  Aligned_cols=58  Identities=14%  Similarity=0.158  Sum_probs=43.2

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ++++|++|=-|+..|+   ++..+++.|++|++++.++.  -++.+.+.+...+..+.+...|
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~--~l~~~~~~~~~~~~~~~~~~~D   63 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK--ELDECLEIWREKGLNVEGSVCD   63 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCCceEEEee
Confidence            4689999999998774   34456778999999999964  6666667777777666665554

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.28  E-value=0.098  Score=35.40  Aligned_cols=44  Identities=23%  Similarity=0.191  Sum_probs=31.1

Q ss_pred             ccCCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506           66 RYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        66 ~~~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      ....++.+||=+||| .|+..+.+++ +|++|+++|.++.  -++.++
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~--~~~~a~   68 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA--KLELAR   68 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHH
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhh--HHHhhh
Confidence            334567888889998 6777775554 5789999999864  444443

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=93.25  E-value=0.063  Score=39.35  Aligned_cols=55  Identities=18%  Similarity=0.048  Sum_probs=35.9

Q ss_pred             ceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc------CCEEEEEecCCh
Q 031506           48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV------GSNVTLTDDSNR  103 (158)
Q Consensus        48 g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~------g~~v~~tD~~~~  103 (158)
                      |..+|....-++-|-. -....++++|||+|++.|..++.++..      ..+|+++|+++.
T Consensus        59 G~p~~k~p~d~~~~~e-li~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~  119 (232)
T d2bm8a1          59 GLRMLKDPDTQAVYHD-MLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS  119 (232)
T ss_dssp             TEECCSCHHHHHHHHH-HHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT
T ss_pred             ceecccCHHHHHHHHH-HHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChh
Confidence            5556655555544421 112346779999999999877765532      359999999864

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=93.21  E-value=0.09  Score=39.19  Aligned_cols=53  Identities=19%  Similarity=0.073  Sum_probs=39.6

Q ss_pred             ceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecC
Q 031506           48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDS  101 (158)
Q Consensus        48 g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~  101 (158)
                      |..+-.++..|.+...+. ...++.+|+|||||.|--+-.++.+.  ..|.++++-
T Consensus        45 ~~~~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG   99 (257)
T d2p41a1          45 HHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG   99 (257)
T ss_dssp             SCCSSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             CCCcchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence            445557888887766554 44456689999999999999888764  378888774

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.18  Score=36.86  Aligned_cols=58  Identities=16%  Similarity=0.178  Sum_probs=42.4

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++.+|=-|++.|+   ++..+++.|++|+++|.++.  -++.+.+.++..+.++.....|
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~--~~~~~~~~l~~~g~~~~~~~~D   68 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD--AANHVVDEIQQLGGQAFACRCD   68 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHHcCCcEEEEEcc
Confidence            4689999999988764   33356778999999999854  6777777777666666655554

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.12  E-value=0.24  Score=36.15  Aligned_cols=59  Identities=10%  Similarity=0.161  Sum_probs=42.8

Q ss_pred             cCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .+++++.+|=-|++.|+   ++..+++.|++|+++|.++.  -++.+.+.+...+..+.+...|
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~--~l~~~~~~~~~~g~~~~~~~~D   65 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK--ELNDCLTQWRSKGFKVEASVCD   65 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCEEEEEECC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCCceEEEee
Confidence            35689999999998774   34456778999999999864  6776666676666555555443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.98  E-value=0.11  Score=35.78  Aligned_cols=43  Identities=40%  Similarity=0.512  Sum_probs=31.5

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++.+||=+||| .|+..+.+++ +|+ +|+++|.++.  -++.++
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~--~~~~a~   70 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN--RLKLAE   70 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH--HHHHHH
T ss_pred             CCCCCCEEEEECCCccchhheecccccccccccccccccc--cccccc
Confidence            34578899999998 5777775555 576 8999999864  555554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.95  E-value=0.21  Score=36.40  Aligned_cols=59  Identities=14%  Similarity=0.049  Sum_probs=42.3

Q ss_pred             cCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ..+++|.+|=-|++.|+   ++..+++.|++|+++|.++.  .++.+.+.++..+.++.....|
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~--~l~~~~~~l~~~g~~~~~~~~D   67 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK--SCDSVVDEIKSFGYESSGYAGD   67 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH--HHHHHHHHHHTTTCCEEEEECC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEcc
Confidence            45678889999988773   23345667999999999864  6777777777666666555554

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.65  E-value=0.067  Score=33.77  Aligned_cols=64  Identities=13%  Similarity=0.110  Sum_probs=40.5

Q ss_pred             CCCCeEEEeccC-CCHHH--HHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC----CCCcEEE-ecCC
Q 031506           69 FSGANVVELGAG-TSLPG--LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS----LPPSHIC-SRVL  138 (158)
Q Consensus        69 ~~~~~vLELG~G-tGl~~--i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d----~~fD~Ii-~d~i  138 (158)
                      .+.+++.=+|.| +|..+  ..+.++|.+|++.|.... +..+    .+..++..+.. +.+    ...|+|+ +..+
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~-~~~~----~L~~~Gi~v~~-g~~~~~i~~~d~vV~S~AI   77 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG-VVTQ----RLAQAGAKIYI-GHAEEHIEGASVVVVSSAI   77 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS-HHHH----HHHHTTCEEEE-SCCGGGGTTCSEEEECTTS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC-hhhh----HHHHCCCeEEE-CCccccCCCCCEEEECCCc
Confidence            355677777755 77655  467889999999999864 2333    23345544322 111    1789999 6665

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.53  E-value=0.23  Score=33.97  Aligned_cols=45  Identities=20%  Similarity=0.290  Sum_probs=31.0

Q ss_pred             HHHHHHhcccCCCCCeEEEeccCCCHHHH--HHhhcCCEEEEEecCC
Q 031506           58 LAEYVWQQRYRFSGANVVELGAGTSLPGL--VAAKVGSNVTLTDDSN  102 (158)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~i--~~a~~g~~v~~tD~~~  102 (158)
                      +.+-+.+.....++++||=||||--.-++  .+++.|.+|+.+..+.
T Consensus         5 f~~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1           5 LLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             HHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            33445555556789999999999333333  4567788999998875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.48  E-value=0.14  Score=34.69  Aligned_cols=44  Identities=34%  Similarity=0.375  Sum_probs=31.6

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~  112 (158)
                      ...++.+||=+||| .|+.++.+++ .|++|+++|.++.  -++.+++
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~--r~~~a~~   68 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR--RLEVAKN   68 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHH--HHHHHHH
Confidence            34567889989988 6777775544 6889999999864  4555443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.40  E-value=0.36  Score=35.06  Aligned_cols=65  Identities=11%  Similarity=0.102  Sum_probs=45.0

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHH-HHcCCcceEEEcCC---------------
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC-EMNKLNCRLLMTSL---------------  128 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~-~~n~~~~~~~~~d~---------------  128 (158)
                      +++++.+|=-|++.|+   ++..+++.|++|+++|.++.  -++...+.+ +..+.++.....|.               
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~--~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLE--EASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4688999999998774   34466788999999999864  444443333 34455555555543               


Q ss_pred             ---CCcEEE
Q 031506          129 ---PPSHIC  134 (158)
Q Consensus       129 ---~fD~Ii  134 (158)
                         +.|+++
T Consensus        80 ~~g~iDiLV   88 (251)
T d1vl8a_          80 KFGKLDTVV   88 (251)
T ss_dssp             HHSCCCEEE
T ss_pred             HcCCCCEEE
Confidence               799998

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.32  Score=35.45  Aligned_cols=58  Identities=10%  Similarity=0.091  Sum_probs=41.2

Q ss_pred             CCCCCeEEEeccCCCHH---HHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC
Q 031506           68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~---~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d  127 (158)
                      .++++.+|=-|++.|+=   +..+++.|++|++++.++.  -++.+.+.++..+..  +.+...|
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~--~l~~~~~~l~~~~~~~~~~~~~~D   69 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG--NIEELAAECKSAGYPGTLIPYRCD   69 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCSSEEEEEECC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCCceEEEEEcc
Confidence            47899999999998753   3355678999999999854  677777766665543  3344444

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.10  E-value=0.37  Score=35.25  Aligned_cols=59  Identities=15%  Similarity=0.090  Sum_probs=42.9

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      +++++.+|=-|++.|+   ++..+++.|++|++++.+.. +.++.+.+.++..+.++.....|
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~-~~~~~~~~~~~~~g~~~~~~~~D   65 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE-DEANSVLEEIKKVGGEAIAVKGD   65 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-HHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHHHHHhcCCcEEEEEcc
Confidence            4789999999998874   33456778999999999863 35666666777666666555554

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.99  E-value=0.34  Score=35.57  Aligned_cols=57  Identities=21%  Similarity=0.361  Sum_probs=41.4

Q ss_pred             CCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEcC
Q 031506           69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~d  127 (158)
                      ++|+++|=-|++.|+   ++..+++.|++|+++|.++.  -++.+.+.+...+..   +.....|
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~--~l~~~~~~i~~~~~~~~~~~~~~~D   64 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED--RLEETKQQILKAGVPAEKINAVVAD   64 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcceEEEEee
Confidence            678999999998874   34456778999999999864  677777777766532   3444444

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.78  E-value=0.16  Score=34.97  Aligned_cols=43  Identities=23%  Similarity=0.325  Sum_probs=30.9

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ...++.+||=+||| .|+.++.+++ .|+ +|+++|.++.  -++.++
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~--r~~~a~   69 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI--CVEAAK   69 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH--HHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhh--hHHHHH
Confidence            34467788889998 5888886666 566 7999999864  444443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.62  E-value=0.54  Score=34.01  Aligned_cols=59  Identities=12%  Similarity=0.127  Sum_probs=43.2

Q ss_pred             CCCCCeEEEeccCCC---HHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtG---l~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .+.|+++|=-|++.|   .++..+++.|++|++++.... +.++.+.+.+..++.++.....|
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~-~~~~~~~~~~~~~g~~~~~~~~D   64 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSS-KAAEEVVAELKKLGAQGVAIQAD   64 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCCh-HHHHHHHHHHHHcCCCceEecCC
Confidence            367899998897766   344466778999999877653 56777888888777766666554

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.50  E-value=0.68  Score=33.42  Aligned_cols=78  Identities=9%  Similarity=0.061  Sum_probs=49.1

Q ss_pred             CCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc--CCcceEEEcCC----------------
Q 031506           70 SGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRLLMTSL----------------  128 (158)
Q Consensus        70 ~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~~d~----------------  128 (158)
                      .||.+|=-|++.|+   ++..+++.|++|+++|.+..  -++.+...+...  +.++.+...|.                
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE--AGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            57888888988774   23355678999999999964  555555544332  23344444443                


Q ss_pred             --CCcEEE-ecCCCCCccHHHHHH
Q 031506          129 --PPSHIC-SRVLQDQSSLRLIII  149 (158)
Q Consensus       129 --~fD~Ii-~d~iy~~~~~~~ll~  149 (158)
                        +.|+++ +=-+......+..++
T Consensus        80 ~G~iDilVnnAg~~~~~~~~~~~~  103 (254)
T d2gdza1          80 FGRLDILVNNAGVNNEKNWEKTLQ  103 (254)
T ss_dssp             HSCCCEEEECCCCCCSSSHHHHHH
T ss_pred             cCCcCeecccccccccccchheee
Confidence              799999 444555555554443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.27  E-value=0.43  Score=34.89  Aligned_cols=58  Identities=24%  Similarity=0.416  Sum_probs=41.4

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC---cceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL---NCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~~d  127 (158)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.++.  -++.+.+.+...+.   ++.....|
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~--~l~~~~~~l~~~~~~~~~~~~~~~D   65 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE--RLEETRQIILKSGVSEKQVNSVVAD   65 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHTTTCCGGGEEEEECC
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCCCCceEEEEcc
Confidence            4789999999988773   34456778999999999864  67777777765543   24444444

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.17  E-value=0.47  Score=34.49  Aligned_cols=58  Identities=17%  Similarity=0.303  Sum_probs=40.7

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~d  127 (158)
                      .+++|.+|=-|++.|+   ++..+++.|++|+++|.++.  .++.+.+.+...+..   +.....|
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~--~l~~~~~~l~~~~~~~~~~~~~~~D   65 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE--RLEETRQQILAAGVSEQNVNSVVAD   65 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCCcCceEEEEcc
Confidence            3678889999988774   33356778999999999864  677777777665432   4444444

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=91.10  E-value=0.27  Score=35.77  Aligned_cols=58  Identities=12%  Similarity=0.133  Sum_probs=38.6

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHH-HHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC-EMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~-~~n~~~~~~~~~d  127 (158)
                      ++++|++|=-|++.|+   ++..+++.|++|+++|.++.  -++.+.+.+ +..+.++.....|
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~--~~~~~~~~~~~~~g~~~~~~~~D   67 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA--DAVEVTEKVGKEFGVKTKAYQCD   67 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT--THHHHHHHHHHHHTCCEEEEECC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHHHhCCceEEEEcc
Confidence            4789999999987764   34456778999999999975  333333333 3445555555554

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.02  E-value=0.25  Score=34.62  Aligned_cols=45  Identities=24%  Similarity=0.276  Sum_probs=32.6

Q ss_pred             ccCCCCCeEEEeccCC-CHHHHHHhh-cCC-EEEEEecCChHHHHHHHHH
Q 031506           66 RYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        66 ~~~~~~~~vLELG~Gt-Gl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~~  112 (158)
                      ....++.+||-+|||. |+.++.+++ +|+ +|+++|.++.  -++.+++
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~--rl~~a~~   68 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA--RLAHAKA   68 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH--HHHHHHH
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch--hhHhhhh
Confidence            3455788999999994 777776664 566 8999999864  5555543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=90.89  E-value=0.15  Score=35.64  Aligned_cols=43  Identities=23%  Similarity=0.304  Sum_probs=33.7

Q ss_pred             CCCCeEEEeccC-CCHHHHH-HhhcCCEEEEEecCChHHHHHHHHHH
Q 031506           69 FSGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSNRIEVLKNMRRV  113 (158)
Q Consensus        69 ~~~~~vLELG~G-tGl~~i~-~a~~g~~v~~tD~~~~~~~l~~~~~n  113 (158)
                      .+..+|+=||+| .|+.++. +..+|++|++.|.++.  .++.++.-
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~--~l~~l~~~   74 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE--RLSYLETL   74 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH--HHHHHHHh
Confidence            367899999999 7888885 4557999999999964  66665543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.82  E-value=0.58  Score=33.99  Aligned_cols=57  Identities=19%  Similarity=0.249  Sum_probs=39.5

Q ss_pred             CCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC--CcceEEEcC
Q 031506           69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~~d  127 (158)
                      ++++.+|=-|++.|+   ++..+++.|++|+++|.++.  -++.+...+....  .++.....|
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~--~l~~~~~~~~~~~~~~~~~~~~~D   63 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE--GLEASKAAVLETAPDAEVLTTVAD   63 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhhCCCCeEEEEecc
Confidence            578899999998874   45567888999999999864  6666555554433  234444444

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=90.60  E-value=0.093  Score=32.44  Aligned_cols=36  Identities=28%  Similarity=0.396  Sum_probs=29.3

Q ss_pred             CCCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCCh
Q 031506           68 RFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR  103 (158)
Q Consensus        68 ~~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~  103 (158)
                      ++++++|+=+|.| ||.... .+++.|++|++.|..+.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            4688999999998 776444 67778999999999764

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.57  E-value=0.78  Score=33.16  Aligned_cols=58  Identities=12%  Similarity=0.150  Sum_probs=39.6

Q ss_pred             CCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHH-HcCCcceEEEcC
Q 031506           69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE-MNKLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~-~n~~~~~~~~~d  127 (158)
                      ++++.+|=-|++.|+   ++..+++.|++|++++.++. +.++.+.+.+. ..+.++.+...|
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~-~~~~~~~~~~~~~~g~~~~~~~~D   63 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA-AEIEKVRAGLAAQHGVKVLYDGAD   63 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCH-HHHHHHHHHHHHHHTSCEEEECCC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHHHHHHhcCCcEEEEECC
Confidence            478888988988775   44467788999999999863 45666655554 334455555444

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=90.29  E-value=0.74  Score=33.65  Aligned_cols=58  Identities=16%  Similarity=0.188  Sum_probs=38.4

Q ss_pred             CCCCCeEEEeccCCC---HHHHHHhhcCCEEEEEecCChHHHHHHHHHHH-HHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC-EMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtG---l~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~-~~n~~~~~~~~~d  127 (158)
                      .++|+++|=-|+..|   .++..+++.|++|+++|.+..  -++...+.+ ...+..+.....|
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~--~l~~~~~~l~~~~g~~~~~~~~D   83 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD--VLKATAEQISSQTGNKVHAIQCD   83 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHHHSSCEEEEECC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHHhcCCceEEEEec
Confidence            678999999999876   333356678999999999964  444444333 3344444444443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.14  E-value=0.7  Score=33.37  Aligned_cols=55  Identities=11%  Similarity=0.035  Sum_probs=38.8

Q ss_pred             CCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           71 GANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        71 ~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      +|.+|=-|++.|+   ++..+++.|++|+++|.++.  .++.+.+.+...+.++.....|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~--~l~~~~~~l~~~g~~~~~~~~D   59 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEE--GLRTTLKELREAGVEADGRTCD   59 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEee
Confidence            4555777877664   33456778999999999853  6777777777766666666654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.11  E-value=0.44  Score=32.65  Aligned_cols=47  Identities=17%  Similarity=0.245  Sum_probs=33.5

Q ss_pred             hcccCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHHH
Q 031506           64 QQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        64 ~~~~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~~  112 (158)
                      +.....++..|+=.||| .|+.++..++ .|+ +|+++|.++.  -++.+++
T Consensus        23 ~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~--kl~~Ak~   72 (176)
T d1d1ta2          23 KTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD--KFEKAMA   72 (176)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHHH
T ss_pred             HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH--HHHHHHh
Confidence            33345578899999998 6777775554 564 8999999975  5555443

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=90.10  E-value=0.31  Score=37.49  Aligned_cols=49  Identities=14%  Similarity=0.099  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhcc---cCCCCCeEEEeccCCCHHHHHHhh-c--------CCEEEEEecCCh
Q 031506           55 SVILAEYVWQQR---YRFSGANVVELGAGTSLPGLVAAK-V--------GSNVTLTDDSNR  103 (158)
Q Consensus        55 ~~~la~~l~~~~---~~~~~~~vLELG~GtGl~~i~~a~-~--------g~~v~~tD~~~~  103 (158)
                      +..+|.|+....   ...+..+|+|+|+|+|.++.-+.+ .        ..+++.++.++.
T Consensus        61 g~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~  121 (365)
T d1zkda1          61 GELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV  121 (365)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH
T ss_pred             HHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchh
Confidence            455566665432   222345799999999988763322 1        226888998863

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.05  E-value=0.45  Score=31.67  Aligned_cols=44  Identities=25%  Similarity=0.208  Sum_probs=30.5

Q ss_pred             cCCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHHH
Q 031506           67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~  112 (158)
                      ...++.+||=.||| .|+..+.+++ .|++|++++.++.  -++.+++
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~--r~~~~k~   69 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE--KLELAKE   69 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH--HHHHHHH
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH--Hhhhhhh
Confidence            34477888889998 5666665444 5789999999864  4444443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=89.87  E-value=0.2  Score=35.42  Aligned_cols=42  Identities=24%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             CCCCeEEEeccC-CCHHHHH-HhhcCCEEEEEecCChHHHHHHHHH
Q 031506           69 FSGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        69 ~~~~~vLELG~G-tGl~~i~-~a~~g~~v~~tD~~~~~~~l~~~~~  112 (158)
                      .++.+|+=||+| .|+.++. +..+|++|++.|.++.  .++.+++
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~--~~~~l~~   70 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA--TKEQVES   70 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST--THHHHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH--HHHHHHH
Confidence            367799999999 6888874 4458999999999975  5665554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.58  E-value=0.48  Score=31.90  Aligned_cols=38  Identities=24%  Similarity=0.247  Sum_probs=28.2

Q ss_pred             ccCCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCCh
Q 031506           66 RYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR  103 (158)
Q Consensus        66 ~~~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~  103 (158)
                      ....++.+||=+||| .|++++.+++ .|++++++|.++.
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            344578888889988 5777775555 6888889998864

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=89.22  E-value=0.61  Score=33.91  Aligned_cols=57  Identities=9%  Similarity=0.124  Sum_probs=37.9

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++.+|=-|++.|+   ++..+++.|++|+++|.++.  -++.+.+.+...+ .+.+...|
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~--~~~~~~~~l~~~~-~~~~~~~D   62 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD--HGQKVCNNIGSPD-VISFVHCD   62 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHCCTT-TEEEEECC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHhcCCC-ceEEEEcc
Confidence            4689999999988774   23345678999999999864  5666555554332 23344444

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.10  E-value=0.93  Score=32.65  Aligned_cols=52  Identities=17%  Similarity=0.162  Sum_probs=36.2

Q ss_pred             EEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           74 VVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        74 vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      +|=-|++.|+   ++..+++.|++|+++|.++.  -++.+.+.+...+.++.....|
T Consensus         4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~--~l~~~~~~i~~~g~~~~~~~~D   58 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA--TAKAVASEINQAGGHAVAVKVD   58 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEee
Confidence            4666877663   33356778999999999864  6777777777666666655554

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.95  E-value=1.1  Score=32.37  Aligned_cols=56  Identities=21%  Similarity=0.377  Sum_probs=39.1

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHH-HcCCcceEEE
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE-MNKLNCRLLM  125 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~-~n~~~~~~~~  125 (158)
                      .++|+++|=-|++.|+   ++..+++.|++|++++.++.  -++.+.+.+. ..+.......
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~--~l~~~~~~~~~~~~~~~~~~~   70 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE--TLQKVVSHCLELGAASAHYIA   70 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHHTCSEEEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHhhhhcccchhhh
Confidence            4789999999999884   44456778999999999964  6766555443 3343343333

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.66  E-value=0.37  Score=33.07  Aligned_cols=38  Identities=18%  Similarity=0.358  Sum_probs=29.8

Q ss_pred             ccCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCCh
Q 031506           66 RYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR  103 (158)
Q Consensus        66 ~~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~  103 (158)
                      ....++.+||=+||| .|+.++.+++ .|+ .|+++|.++.
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            344577899999999 5888886666 576 7999999974

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=88.57  E-value=0.6  Score=33.74  Aligned_cols=57  Identities=12%  Similarity=0.159  Sum_probs=38.9

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      .++++.+|=-|++.|+   ++..+++.|++|+++|.++.  .++.+.+.+.. +.++.+...|
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~--~~~~~~~~~~~-~~~~~~~~~D   62 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD--VGEKAAKSVGT-PDQIQFFQHD   62 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHCC-TTTEEEEECC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHhCC-CCcEEEEEcc
Confidence            3688999999988773   33456778999999999853  66666655542 2244555554

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=88.45  E-value=0.37  Score=32.99  Aligned_cols=46  Identities=13%  Similarity=0.236  Sum_probs=33.3

Q ss_pred             hcccCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           64 QQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        64 ~~~~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      +.....++.+||=+||| .|+.++.+++ .|+ +|+++|.++.  -++.++
T Consensus        21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~--kl~~a~   69 (174)
T d1p0fa2          21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD--KFPKAI   69 (174)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG--GHHHHH
T ss_pred             HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH--HHHHHH
Confidence            33445678899999998 6777775554 676 8999999875  455544

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=88.22  E-value=1.9  Score=29.25  Aligned_cols=45  Identities=22%  Similarity=0.278  Sum_probs=29.7

Q ss_pred             HHHHHhcccCCCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCCh
Q 031506           59 AEYVWQQRYRFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSNR  103 (158)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~~  103 (158)
                      .+-+......+++++||=+||| +|...+ .+.+.|. +++..+.++.
T Consensus         6 ~~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1           6 IRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             HHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             HHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            3334444456789999999999 332222 3455666 8999998864

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=0.57  Score=31.65  Aligned_cols=57  Identities=19%  Similarity=0.123  Sum_probs=36.1

Q ss_pred             chHHHHHHHHHhcc-cCCCCCeEEEecc-C-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506           53 PCSVILAEYVWQQR-YRFSGANVVELGA-G-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        53 ~~~~~la~~l~~~~-~~~~~~~vLELG~-G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      |.+..-+.+..... ...++.+||=.|+ | .|..++.+++ .|++|++++.++.  -.+.++
T Consensus        10 ~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~--~~~~~~   70 (174)
T d1yb5a2          10 GIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE--GQKIVL   70 (174)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH--HHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCccccccccccc--cccccc
Confidence            34444455544333 3447889999997 3 6677775554 6889999998753  444443

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=87.70  E-value=0.16  Score=31.60  Aligned_cols=54  Identities=13%  Similarity=0.092  Sum_probs=34.4

Q ss_pred             CCCH--HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC----CCcEEE-ecCCC
Q 031506           80 GTSL--PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL----PPSHIC-SRVLQ  139 (158)
Q Consensus        80 GtGl--~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~----~fD~Ii-~d~iy  139 (158)
                      |+|-  ++..+.++|.+|.+.|..+. ++.+    .++.+++++.. +.+.    ..|+|+ +..+-
T Consensus        11 G~GMs~LA~~L~~~G~~VsGSD~~~~-~~t~----~L~~~Gi~i~~-gh~~~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1          11 GIGMSAVALHEFSNGNDVYGSNIEET-ERTA----YLRKLGIPIFV-PHSADNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSSCC-HHHH----HHHHTTCCEES-SCCTTSCCCCSEEEECTTCC
T ss_pred             HHHHHHHHHHHHhCCCeEEEEeCCCC-hhHH----HHHHCCCeEEe-eecccccCCCCEEEEecCcC
Confidence            3554  44577889999999999874 3333    36667765421 2221    689999 76663

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.68  E-value=0.31  Score=36.10  Aligned_cols=42  Identities=14%  Similarity=-0.022  Sum_probs=33.1

Q ss_pred             CCeEEEeccCCCHHHHHHhhcCC--E-EEEEecCChHHHHHHHHHHH
Q 031506           71 GANVVELGAGTSLPGLVAAKVGS--N-VTLTDDSNRIEVLKNMRRVC  114 (158)
Q Consensus        71 ~~~vLELG~GtGl~~i~~a~~g~--~-v~~tD~~~~~~~l~~~~~n~  114 (158)
                      ..+|+||-||.|.+++.+.+.|.  + |.++|.++.  +.+..+.|.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~--a~~~~~~n~   46 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTV--ANEVYKYNF   46 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHH--HHHHHHHHC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHH--HHHHHHHHC
Confidence            34799999999999988877775  3 678999864  777777664

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.62  E-value=0.63  Score=31.31  Aligned_cols=42  Identities=33%  Similarity=0.429  Sum_probs=30.1

Q ss_pred             CCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        68 ~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ..++.+||=+||| .|+.++.+++ +|+ +|+++|.++.  -++.++
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~--rl~~a~   68 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT--RLSKAK   68 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH--HHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH--HHHHHH
Confidence            3467889999998 5666665544 577 8999999864  455444

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.39  E-value=1.2  Score=30.51  Aligned_cols=50  Identities=14%  Similarity=0.105  Sum_probs=36.8

Q ss_pred             cccCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 031506           65 QRYRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM  116 (158)
Q Consensus        65 ~~~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~  116 (158)
                      ...+++++++|=.|++.|+   ++..+++.|++|++++.+..  -++.+.+.+..
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~--~~~~~~~~~~~   69 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD--KAQAAADSVNK   69 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH--HHHHHHHHHHH
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH--HHHHHHHHHHh
Confidence            3567899999999988663   33356778999999999963  56655555544

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=87.29  E-value=0.61  Score=36.44  Aligned_cols=48  Identities=15%  Similarity=0.053  Sum_probs=37.7

Q ss_pred             CCCeEEEeccCCCHHHHHHhhc----CCEEEEEecCChHHHHHHHHHHHHHcCC
Q 031506           70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKL  119 (158)
Q Consensus        70 ~~~~vLELG~GtGl~~i~~a~~----g~~v~~tD~~~~~~~l~~~~~n~~~n~~  119 (158)
                      ++..++|+||-.|..+..+++.    +.+|++.+-++  ...+.+++|++.|..
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p--~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDR--INLQTLQNVLRRYTD  263 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCH--HHHHHHHHHHHHTTT
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCH--HHHHHHHHHHHhccc
Confidence            4568999999999888755432    34899998885  489999999988753

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=87.05  E-value=1.7  Score=31.08  Aligned_cols=55  Identities=11%  Similarity=0.018  Sum_probs=36.1

Q ss_pred             CCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ++++.+|=-|++.|+   ++..+++.|++|+++|.++..+    ++.-++..+.++.....|
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~----~~~~~~~~g~~~~~~~~D   60 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPE----AEAAIRNLGRRVLTVKCD   60 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHH----HHHHHHHTTCCEEEEECC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH----HHHHHHHcCCcEEEEEee
Confidence            678889988988763   3345677899999999987522    222334445455555554

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.02  E-value=2  Score=31.72  Aligned_cols=48  Identities=19%  Similarity=0.171  Sum_probs=34.7

Q ss_pred             cCCCCCeEEEeccCCCHH---HHHHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 031506           67 YRFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM  116 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl~---~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~  116 (158)
                      ..++++.+|=-|++.|+=   +..+++.|++|+++|.++.  -++.+.+.+..
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~--~l~~~~~el~~   58 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLE--RLKSAADELQA   58 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHh
Confidence            457899999999887743   3355778999999999864  56655555543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=86.92  E-value=1.8  Score=29.25  Aligned_cols=74  Identities=14%  Similarity=0.112  Sum_probs=42.0

Q ss_pred             HHhcccCCCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC----CCcEEE-
Q 031506           62 VWQQRYRFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL----PPSHIC-  134 (158)
Q Consensus        62 l~~~~~~~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~----~fD~Ii-  134 (158)
                      +.+....+++++||=+||| +|...+ .+.+.+.+|+.+..+..  -.+.+.++..... .......+.    .+|+|| 
T Consensus         9 l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~--~a~~l~~~~~~~~-~~~~~~~~~~~~~~~diiIN   85 (171)
T d1p77a1           9 LQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFS--KTKELAERFQPYG-NIQAVSMDSIPLQTYDLVIN   85 (171)
T ss_dssp             HHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHH--HHHHHHHHHGGGS-CEEEEEGGGCCCSCCSEEEE
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHH--HHHHHHHHHhhcc-ccchhhhccccccccceeee
Confidence            4444456789999999999 333222 23455669999999853  4555555444221 222232221    567666 


Q ss_pred             ecCC
Q 031506          135 SRVL  138 (158)
Q Consensus       135 ~d~i  138 (158)
                      +=|+
T Consensus        86 ~tp~   89 (171)
T d1p77a1          86 ATSA   89 (171)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            5443

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=86.28  E-value=1.5  Score=31.64  Aligned_cols=36  Identities=28%  Similarity=0.395  Sum_probs=28.9

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCCh
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNR  103 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~  103 (158)
                      +++++++|=-|++.|+   ++..+++.|++|+++|.++.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4689999999999873   34456778999999999853

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.19  E-value=0.4  Score=31.85  Aligned_cols=33  Identities=30%  Similarity=0.428  Sum_probs=25.0

Q ss_pred             CCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCCh
Q 031506           71 GANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR  103 (158)
Q Consensus        71 ~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~  103 (158)
                      +++||=+||| .|.... .+++.|.+|++.|.+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            5788889997 554443 56677899999999963

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.98  E-value=0.63  Score=31.53  Aligned_cols=51  Identities=20%  Similarity=0.249  Sum_probs=34.0

Q ss_pred             chHHHHHHHHHhcccCCCCCeEEEecc-C-CCHHHHHHhh-cCCEEEEEecCCh
Q 031506           53 PCSVILAEYVWQQRYRFSGANVVELGA-G-TSLPGLVAAK-VGSNVTLTDDSNR  103 (158)
Q Consensus        53 ~~~~~la~~l~~~~~~~~~~~vLELG~-G-tGl~~i~~a~-~g~~v~~tD~~~~  103 (158)
                      +.+..-+.+..+.....++.+||=.|+ | .|..++.+++ .|++|++++.++.
T Consensus        10 ~~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~   63 (171)
T d1iz0a2          10 PVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE   63 (171)
T ss_dssp             HHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccc
Confidence            444444555555444557889998885 4 5666665554 5889999998764

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.97  E-value=1.3  Score=31.91  Aligned_cols=45  Identities=18%  Similarity=0.164  Sum_probs=33.1

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHH
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC  114 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~  114 (158)
                      .++++.+|=-|++.|+   ++..+++.|++|+++|.++.  -++.+.+.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~--~~~~~~~~~   50 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE--EGKAMAAEL   50 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHT
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHh
Confidence            4688999999998774   34456778999999999863  555444433

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=85.38  E-value=1.8  Score=30.89  Aligned_cols=45  Identities=20%  Similarity=0.183  Sum_probs=32.7

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHH
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC  114 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~  114 (158)
                      +++++.+|=-|++.|+   ++..+++.|++|+++|.++.  .++.+.+.+
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~--~l~~~~~~~   48 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN--GAQAISDYL   48 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH--HHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHh
Confidence            3678999999988774   33356778999999999864  566555444

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=85.31  E-value=1.7  Score=30.75  Aligned_cols=49  Identities=12%  Similarity=0.238  Sum_probs=36.4

Q ss_pred             CCCCCeEEEeccCC--CH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC
Q 031506           68 RFSGANVVELGAGT--SL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK  118 (158)
Q Consensus        68 ~~~~~~vLELG~Gt--Gl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~  118 (158)
                      .++++++|=-|+++  |+   ++..+++.|++|++++.++.  ..+.+++.....+
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~--~~~~~~~~~~~~~   55 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK--LKGRVEEFAAQLG   55 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT--THHHHHHHHHHTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHhhcC
Confidence            36789999999866  75   45577889999999999875  5555655555544

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.18  E-value=1.3  Score=29.55  Aligned_cols=44  Identities=16%  Similarity=0.229  Sum_probs=29.7

Q ss_pred             ccCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           66 RYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        66 ~~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ....++.+||=.||| .|..++.+++ .|+ .|+++|.++.  -++.++
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~--k~~~ak   70 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD--KFARAK   70 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG--GHHHHH
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHH--HHHHHH
Confidence            345578899999998 5555554444 675 8999999874  344444

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.94  E-value=1.9  Score=31.05  Aligned_cols=62  Identities=13%  Similarity=0.106  Sum_probs=43.3

Q ss_pred             CCeE-EEeccCCCH---HHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----------------
Q 031506           71 GANV-VELGAGTSL---PGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----------------  128 (158)
Q Consensus        71 ~~~v-LELG~GtGl---~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----------------  128 (158)
                      |+|| |==|++.|+   ++..+++. |++|++++.++.  -++.+.+.++..+.++.+...|.                 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT--RGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH--HHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            5666 555777664   22245655 789999999964  67777777777666777776654                 


Q ss_pred             -CCcEEE
Q 031506          129 -PPSHIC  134 (158)
Q Consensus       129 -~fD~Ii  134 (158)
                       +.|++|
T Consensus        80 g~iDiLV   86 (275)
T d1wmaa1          80 GGLDVLV   86 (275)
T ss_dssp             SSEEEEE
T ss_pred             CCcEEEE
Confidence             799988

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.86  E-value=1.3  Score=31.79  Aligned_cols=54  Identities=9%  Similarity=0.106  Sum_probs=35.8

Q ss_pred             CCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506           69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS  127 (158)
Q Consensus        69 ~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d  127 (158)
                      ++++++|=-|++.|+   ++..+++.|++|+++|.++.  -++.+.+.+   +.++.....|
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~--~l~~~~~~~---~~~~~~~~~D   59 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLE--AARATAAEI---GPAACAIALD   59 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHH--HHHHHHHHH---CTTEEEEECC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHh---CCceEEEEee
Confidence            578899999988773   34456778999999999853  455444333   3344444444

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=83.42  E-value=3  Score=29.56  Aligned_cols=36  Identities=25%  Similarity=0.436  Sum_probs=28.0

Q ss_pred             CCCCCeEEEeccCCCHHH---HHHhhcCCEEEEEecCCh
Q 031506           68 RFSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNR  103 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl~~---i~~a~~g~~v~~tD~~~~  103 (158)
                      .++++.+|=.|++.|+=.   ..+++.|++|++++.+..
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            468899999999977433   345677999999999863

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.28  E-value=1.1  Score=30.18  Aligned_cols=44  Identities=27%  Similarity=0.311  Sum_probs=29.6

Q ss_pred             ccCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           66 RYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        66 ~~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      ....++.+||=+||| .|+.++.+++ .|+ .|+++|.++.  -++.++
T Consensus        24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~--k~~~a~   70 (174)
T d1f8fa2          24 LKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES--RLELAK   70 (174)
T ss_dssp             TCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH--HHHHHH
T ss_pred             hCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHH--HHHHHH
Confidence            344578889999998 5666665554 566 6788898863  445444

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=81.85  E-value=0.6  Score=34.85  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=25.3

Q ss_pred             CCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCC
Q 031506           71 GANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN  102 (158)
Q Consensus        71 ~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~  102 (158)
                      .++|+=+||| +|+.+. .+++.|.+|++.|-++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            5789999999 666555 5677788999999876

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.64  E-value=2  Score=30.88  Aligned_cols=45  Identities=13%  Similarity=0.182  Sum_probs=32.4

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHH
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC  114 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~  114 (158)
                      .++++.+|=-|++.|+   ++..+++.|++|+++|.++.  .++.+.+.+
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~--~~~~~~~~~   50 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA--AGQQLAAEL   50 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH--HHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHh
Confidence            4688999999988773   33456778999999999863  555554433

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=81.43  E-value=1.8  Score=28.93  Aligned_cols=51  Identities=14%  Similarity=0.060  Sum_probs=32.5

Q ss_pred             HHHHHhcc-cCCCCCeEEEeccC--CCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506           59 AEYVWQQR-YRFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        59 a~~l~~~~-~~~~~~~vLELG~G--tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~  111 (158)
                      |.+.+.+. ...++.+||=.|+|  .|...+.+++ .|++|++++.++.  -.+.++
T Consensus        16 A~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~--k~~~~~   70 (179)
T d1qora2          16 VYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ--KAQSAL   70 (179)
T ss_dssp             HHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH--HHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchH--HHHHHH
Confidence            33344333 33467899888666  4566664444 6889999999974  444444

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=81.36  E-value=0.61  Score=32.41  Aligned_cols=32  Identities=28%  Similarity=0.369  Sum_probs=25.3

Q ss_pred             CCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCC
Q 031506           71 GANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN  102 (158)
Q Consensus        71 ~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~  102 (158)
                      +|||+=+|+| .|+.+- .|++.|.+|++.|-++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5789999999 665554 6778899999999754

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.14  E-value=1.9  Score=28.83  Aligned_cols=41  Identities=24%  Similarity=0.264  Sum_probs=28.9

Q ss_pred             CCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506           69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR  111 (158)
Q Consensus        69 ~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~  111 (158)
                      .++.+||=.||| .|+.++.+++ +|+ .|+++|.++.  -++.++
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~--k~~~~~   74 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE--KLKLAE   74 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH--HHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhH--HHHHHh
Confidence            467889999998 6666665554 565 8899999863  444444

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.08  E-value=1  Score=31.27  Aligned_cols=42  Identities=29%  Similarity=0.386  Sum_probs=28.8

Q ss_pred             CeEEEeccCCC--HHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 031506           72 ANVVELGAGTS--LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE  115 (158)
Q Consensus        72 ~~vLELG~GtG--l~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~  115 (158)
                      ++|-=+|+|+=  ..+..+++.|.+|++.|.++.  .++.++++++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~--~l~~a~~~i~   48 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED--ILAKSKKGIE   48 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH--HHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH--HHHHHHhhHH
Confidence            46777888732  223456778999999999964  6665555543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.07  E-value=2  Score=27.31  Aligned_cols=50  Identities=26%  Similarity=0.367  Sum_probs=36.3

Q ss_pred             CCeEEEeccC-CCH-HHHHHhhcCCEEEEEecCCh------HHHHHHHHHHHHHcCCc
Q 031506           71 GANVVELGAG-TSL-PGLVAAKVGSNVTLTDDSNR------IEVLKNMRRVCEMNKLN  120 (158)
Q Consensus        71 ~~~vLELG~G-tGl-~~i~~a~~g~~v~~tD~~~~------~~~l~~~~~n~~~n~~~  120 (158)
                      .++++=+|+| .|+ ++-.++++|.+|++++..+.      +++-+.+++.++.++++
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~   80 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLD   80 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCE
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccce
Confidence            4688888776 343 22255678999999998763      46778888888888865

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=80.58  E-value=6.5  Score=27.92  Aligned_cols=35  Identities=14%  Similarity=0.028  Sum_probs=25.0

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCC
Q 031506           68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSN  102 (158)
Q Consensus        68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~  102 (158)
                      +++++.||=-|++.|+   ++..+++.|++|+++....
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~   39 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            3678999999998885   2334567799877775443

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.03  E-value=2.8  Score=30.92  Aligned_cols=36  Identities=36%  Similarity=0.460  Sum_probs=28.7

Q ss_pred             cCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCC
Q 031506           67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSN  102 (158)
Q Consensus        67 ~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~  102 (158)
                      -.++++.+|=-|++.|+   ++..+++.|++|+++|.+.
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGG   41 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            35789999999999884   3446778899999999764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=80.03  E-value=3.3  Score=29.93  Aligned_cols=42  Identities=21%  Similarity=0.264  Sum_probs=30.7

Q ss_pred             CCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 031506           69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRR  112 (158)
Q Consensus        69 ~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~  112 (158)
                      ++++++|=-|++.|+   ++..+++.|++|+++|.++.  -++.+.+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~--~l~~~~~   47 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE--RLAELET   47 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHH
Confidence            578899999988773   33456778999999999853  5554443