Citrus Sinensis ID: 031539

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPYSYFASPQVVSAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHcccEEEccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEHHHHccccccccccEEEEccccccccEEEccccccccHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mglasmpsaseGMLCLILMNTAMSISIVKGIFRSILKVVGFqladsssppysyfaspqvvsaepydvnlspplsyveefrnqnpaikyetllhcedaehdcsvcltefepqsdinnlscghlFHKVCLEKWLDYLnvtcplcrtplipefeddpscfw
Flexible Loop (DISEMBL)
mglasmpsaSEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPYSYFASPQVVSAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTplipefeddpscfw
Low Complexity Region (SEG)
MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADsssppysyFASPQVVSAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW
Disordered region (IsUnstruct)
************MLCLILMNTAMSISIVKGIFRSILKVVGFQLADSS*PPYSYFASPQVVSAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF********
Disordered Region (DISOPRED)
*******SASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADS************************************NPAI**********AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI*********FW
Disordered Region (DISEMBL)
********ASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPYSYFASPQVVSAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW
Disordered Region (DISPRO)
****SMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLA**************************PPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPYSYFASPQVVSAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q9ZU51	147	Probable E3 ubiquitin-pro	no	no	0.506	0.544	0.397	1e-12
Q9ZT50	155	E3 ubiquitin-protein liga	no	no	0.316	0.322	0.48	1e-09
Q9SUS5	157	E3 ubiquitin-protein liga	no	no	0.772	0.777	0.305	2e-09
Q8LDB8	381	E3 ubiquitin-protein liga	no	no	0.322	0.133	0.462	4e-08
Q9LN71	408	E3 ubiquitin-protein liga	no	no	0.348	0.134	0.474	5e-08
Q9SN28	236	RING-H2 finger protein AT	no	no	0.525	0.351	0.363	5e-08
Q9SN27	225	E3 ubiquitin-protein liga	no	no	0.525	0.368	0.363	6e-08
Q9SUS4	159	RING-H2 zinc finger prote	no	no	0.405	0.402	0.382	9e-08
Q9FGJ6	166	RING-H2 finger protein AT	no	no	0.455	0.433	0.378	1e-07
Q9NVW2	624	E3 ubiquitin-protein liga	yes	no	0.322	0.081	0.403	4e-07

>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 67  VNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKV 126
           V ++  LS + +  N N    Y    + ++A  DC VCL++ +   ++  L C H+FHK 
Sbjct: 43  VVVTSNLSVLADQLNLNRLFSYR---YSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQ 99

Query: 127 CLEKWLDYLNVTCPLCRTPLIPE 149
           CLE WL +LN  CPLCR+PL+P 
Sbjct: 100 CLEGWLQHLNFNCPLCRSPLLPH 122

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 33/50 (66%)

Query: 100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           DC VCL++ +   ++  L C H+FHK CLE WL   N TCPLCR+ L+ +
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSD 134

E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid (ABA) signaling and responses to salt and osmotic stresses during seed germination and early seedling development. Possesses E3 ubiquitin ligase activity in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 12/134 (8%)

Query: 28  VKGIFRSILKVVGF--QLADSSSPPY---SYFASPQVVSAEPYDVNLSPPLSYVEEFRNQ 82
           + G     L V+GF   + D+  P     S+    +   ++P  + LS   +   E    
Sbjct: 12  IPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRLALSTSATLANEL--- 68

Query: 83  NPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWL-DYLNVTCP 140
            P +++  LL   D E  C+VCL++F     I  L  CGH+FH  CL++W+ D   +TCP
Sbjct: 69  IPVVRFSDLL--TDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCP 126

Query: 141 LCRTPLIPEFEDDP 154
           +CR   +PE +  P
Sbjct: 127 ICRNRFLPEEKSTP 140

Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 95  EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148
           EDAE  C +CL+ +E ++++  L CGH FH  C++KWL Y+N TCPLC+  ++ 
Sbjct: 321 EDAE--CCICLSAYEDETELRELPCGHHFHCGCVDKWL-YINATCPLCKYNILK 371

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 90  TLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148
           TLL  EDAE  C +CL+ +E  +++  L CGH FH  C++KWL Y+N TCPLC+  ++ 
Sbjct: 345 TLLQ-EDAE--CCICLSAYEDGTELRELPCGHHFHCSCVDKWL-YINATCPLCKYNILK 399

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 64  PYDVNLSPP-LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGH 121
           P + NLS   L   ++ R   P + Y+     +D++  CSVCL +++ +  +  + SCGH
Sbjct: 75  PTNNNLSTAELGLSKDIREMLPVVIYKESFIVKDSQ--CSVCLGDYQAEEKLQQMPSCGH 132

Query: 122 LFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
            FH  C++ WL   + TCPLCR  LIP+
Sbjct: 133 TFHMECIDLWLTS-HTTCPLCRLSLIPK 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN27|ATL59_ARATH E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)

Query: 64  PYDVNLSPP-LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGH 121
           P + NLS   L   ++ R   P + Y+      D +  CSVCL +++ +  +  + SCGH
Sbjct: 61  PTNNNLSTAELGLSKDIREMLPIVIYKESFTVNDTQ--CSVCLGDYQAEEKLQQMPSCGH 118

Query: 122 LFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
            FH  C++ WL   + TCPLCR  LIP+
Sbjct: 119 TFHMECIDLWLTS-HTTCPLCRLSLIPK 145

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, and UBC34 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SUS4|RHA1A_ARATH RING-H2 zinc finger protein RHA1a OS=Arabidopsis thaliana GN=RHA1A PE=2 SV=1

 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 84  PAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWL-DYLNVTCPL 141
           P +++  L    D E  C+VCL++FE    +  L  CGH+FH  CL++W+ DY  + CP+
Sbjct: 71  PVVRFSDLP--TDPEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWIVDYNKMKCPV 128

Query: 142 CRTPLIPE 149
           CR   +P+
Sbjct: 129 CRHRFLPK 136

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 83  NPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPL 141
            P + Y + L    AE +C++CL+EFE    I  L  C H FH  C+ KWL   + +CP 
Sbjct: 89  TPTLVYSSDLELAGAEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRS-SCPT 147

Query: 142 CRTPLIPEFEDDPS 155
           CRT +  +  + PS
Sbjct: 148 CRTSIFSQHSETPS 161

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 96  DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
           DA   CSVC+TE+   + +  L C H +H  C+++WL   N TCP+CR  ++
Sbjct: 565 DALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NSTCPICRRAVL 615

E3 ubiquitin-protein ligase. Acts as a negative coregulator for LIM homeodomain transcription factors by mediating the ubiquitination and subsequent degradation of LIM cofactors LDB1 and LDB2 and by mediating the recruitment the SIN3a/histone deacetylase corepressor complex. Ubiquitination and degradation of LIM cofactors LDB1 and LDB2 allows DNA-bound LIM homeodomain transcription factors to interact with other protein partners such as RLIM. Plays a role in telomere length-mediated growth suppression by mediating the ubiquitination and degradation of TERF1. Acts as an activator of random inactivation of X chromosome in the embryo, a stochastic process in which one X chromosome is inactivated to minimize sex-related dosage differences of X-encoded genes in somatic cells of female placental mammals.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
76446335	158	RING-H2 finger protein [Citrus trifoliat	1.0	1.0	0.981	2e-85
224131904	153	predicted protein [Populus trichocarpa]	0.968	1.0	0.613	2e-47
147843500	223	hypothetical protein VITISV_037474 [Viti	0.955	0.677	0.569	4e-46
225447484	151	PREDICTED: E3 ubiquitin-protein ligase R	0.955	1.0	0.569	8e-46
255586512	156	RING-H2 finger protein ATL3J, putative [	0.974	0.987	0.581	2e-45
358249140	155	uncharacterized protein LOC100786803 [Gl	0.974	0.993	0.579	1e-44
217071670	155	unknown [Medicago truncatula] gi|3885192	0.968	0.987	0.593	3e-44
449444454	155	PREDICTED: E3 ubiquitin-protein ligase R	0.981	1.0	0.601	7e-44
351720999	154	uncharacterized protein LOC100305532 [Gl	0.968	0.993	0.566	2e-43
388494236	154	unknown [Lotus japonicus]	0.962	0.987	0.568	3e-43

>gi|76446335|gb|ABA42952.1| RING-H2 finger protein [Citrus trifoliata]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/158 (98%), Positives = 156/158 (98%)

Query: 1   MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPYSYFASPQVV 60
           MGLASMPSASEGMLCLILMNTAM ISIVKGIFRSILKVVGFQLA+SSS PYSYFASPQVV
Sbjct: 1   MGLASMPSASEGMLCLILMNTAMPISIVKGIFRSILKVVGFQLAESSSTPYSYFASPQVV 60

Query: 61  SAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCG 120
           SAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCG
Sbjct: 61  SAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCG 120

Query: 121 HLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW 158
           HLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW
Sbjct: 121 HLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW 158

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131904|ref|XP_002321207.1| predicted protein [Populus trichocarpa] gi|222861980|gb|EEE99522.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/158 (61%), Positives = 128/158 (81%), Gaps = 5/158 (3%)

Query: 1   MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPYSYFASPQVV 60
           MGL+S+P+ SEG+LC++L+NTA+SISIVKGI RSIL +VG +L+ S+S P S  A     
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTALSISIVKGIVRSILHIVGIRLSPSASLPSSDNAED--- 57

Query: 61  SAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCG 120
           + E  +  LSPP +Y+EEFR++ P+I++ T+  CE  EHDCSVCLT+FEP+S+IN+LSCG
Sbjct: 58  TRESLEFRLSPPENYIEEFRSRMPSIRFNTVCSCEQPEHDCSVCLTQFEPESEINSLSCG 117

Query: 121 HLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW 158
           H+FHK+CLEKWLDY N+TCPLCRTPL+P  E+D SCFW
Sbjct: 118 HIFHKMCLEKWLDYWNITCPLCRTPLLP--EEDASCFW 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843500|emb|CAN82068.1| hypothetical protein VITISV_037474 [Vitis vinifera]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 123/158 (77%), Gaps = 7/158 (4%)

Query: 1   MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPYSYFASPQVV 60
           MGL+S+P+ SEG+LC++L+NTA+SISI KGI R+IL V+G  L  S++P  S    P   
Sbjct: 73  MGLSSLPAPSEGVLCVLLVNTALSISIFKGIVRAILHVIGIHL--SATPSSSDSPEP--- 127

Query: 61  SAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCG 120
           ++EP++   +P  + +EEFR++NPAI+++T+  C+  EHDC+VCLT FEP S+IN+L CG
Sbjct: 128 TSEPFEFRRNPSETCMEEFRSRNPAIRFDTVCSCKRPEHDCAVCLTRFEPDSEINHLPCG 187

Query: 121 HLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW 158
           H FHKVCLEKWLDY N+TCPLCRTPL+P  E++ SCFW
Sbjct: 188 HFFHKVCLEKWLDYWNITCPLCRTPLMP--EEETSCFW 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447484|ref|XP_002264718.1| PREDICTED: E3 ubiquitin-protein ligase RHA1B [Vitis vinifera]

 Score =  188 bits (477), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 123/158 (77%), Gaps = 7/158 (4%)

Query: 1   MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPYSYFASPQVV 60
           MGL+S+P+ SEG+LC++L+NTA+SISI KGI R+IL V+G  L  S++P  S    P   
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTALSISIFKGIVRAILHVIGIHL--SATPSSSDSPEP--- 55

Query: 61  SAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCG 120
           ++EP++   +P  + +EEFR++NPAI+++T+  C+  EHDC+VCLT FEP S+IN+L CG
Sbjct: 56  TSEPFEFRRNPSETCMEEFRSRNPAIRFDTVCSCKRPEHDCAVCLTRFEPDSEINHLPCG 115

Query: 121 HLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW 158
           H FHKVCLEKWLDY N+TCPLCRTPL+P  E++ SCFW
Sbjct: 116 HFFHKVCLEKWLDYWNITCPLCRTPLMP--EEETSCFW 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586512|ref|XP_002533895.1| RING-H2 finger protein ATL3J, putative [Ricinus communis] gi|223526146|gb|EEF28485.1| RING-H2 finger protein ATL3J, putative [Ricinus communis]

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/160 (58%), Positives = 120/160 (75%), Gaps = 6/160 (3%)

Query: 1   MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPY--SYFASPQ 58
           MGL+S+P+ SEG+LC++L+NTA+SISI KGI RSIL +VG +L+ SSS      Y   P 
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTALSISIFKGIVRSILHIVGIRLSSSSSSTASSDYNEDP- 59

Query: 59  VVSAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLS 118
               + ++  L P  SY+ EFR++ PA +++++  C+  EHDCSVCLT FEP+S+IN LS
Sbjct: 60  ---TDLFEFRLPPSESYINEFRSRTPATRFDSVCRCKQIEHDCSVCLTRFEPESEINCLS 116

Query: 119 CGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW 158
           CGHLFHKVCLEKWLDY NVTCPLCR+P+IP  ED  SCFW
Sbjct: 117 CGHLFHKVCLEKWLDYWNVTCPLCRSPVIPSEEDTSSCFW 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249140|ref|NP_001240255.1| uncharacterized protein LOC100786803 [Glycine max] gi|255639664|gb|ACU20126.1| unknown [Glycine max]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/157 (57%), Positives = 122/157 (77%), Gaps = 3/157 (1%)

Query: 1   MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPYSYFASPQVV 60
           MGL+S+P+ SEG+LC++L+NT +SISI KGI R+IL +VG  L+ SSS   S      + 
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSSSTSPSSPDP-SLT 59

Query: 61  SAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCG 120
           + E ++ +LSP  SY+EEFR++ P ++++++  C+  EHDCSVCLT+FEP+S+IN LSCG
Sbjct: 60  APESFEFHLSPSESYIEEFRSRTPTLRFDSVCCCKQPEHDCSVCLTQFEPESEINRLSCG 119

Query: 121 HLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCF 157
           HLFHKVCLEKWLDY N+TCPLCRTPL+P  EDD  CF
Sbjct: 120 HLFHKVCLEKWLDYWNITCPLCRTPLMP--EDDTPCF 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071670|gb|ACJ84195.1| unknown [Medicago truncatula] gi|388519267|gb|AFK47695.1| unknown [Medicago truncatula]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/160 (59%), Positives = 127/160 (79%), Gaps = 7/160 (4%)

Query: 1   MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPYSYFASPQVV 60
           MGL+S+P+ SEG+LC+IL+NTAMSISI KGI R+IL +VG   + SSSP   Y   PQ +
Sbjct: 1   MGLSSLPAQSEGVLCIILVNTAMSISIFKGIIRTILHIVGIIASPSSSPSQDYI--PQNI 58

Query: 61  SAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLH-CEDAEHDCSVCLTEFEPQSDINN-LS 118
             E Y+++LSP   +VEEFR++ P ++++++ + C++ EHDCSVCLT+FEP+S+IN  +S
Sbjct: 59  -PESYEIHLSPSDDFVEEFRSRTPTLRFDSVCNSCKEPEHDCSVCLTQFEPESEINYCIS 117

Query: 119 CGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW 158
           CGH+FHKVCLEKWLDY N+TCPLCR+PLIP  EDD SC W
Sbjct: 118 CGHVFHKVCLEKWLDYWNITCPLCRSPLIP--EDDASCLW 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444454|ref|XP_004139989.1| PREDICTED: E3 ubiquitin-protein ligase RHA1B-like isoform 1 [Cucumis sativus] gi|449444456|ref|XP_004139990.1| PREDICTED: E3 ubiquitin-protein ligase RHA1B-like isoform 2 [Cucumis sativus] gi|449444458|ref|XP_004139991.1| PREDICTED: E3 ubiquitin-protein ligase RHA1B-like isoform 3 [Cucumis sativus] gi|449475654|ref|XP_004154514.1| PREDICTED: E3 ubiquitin-protein ligase RHA1B-like isoform 1 [Cucumis sativus] gi|449475656|ref|XP_004154515.1| PREDICTED: E3 ubiquitin-protein ligase RHA1B-like isoform 2 [Cucumis sativus] gi|449475659|ref|XP_004154516.1| PREDICTED: E3 ubiquitin-protein ligase RHA1B-like isoform 3 [Cucumis sativus]

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 123/158 (77%), Gaps = 3/158 (1%)

Query: 1   MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPYSYFASPQVV 60
           MGL+S+P+ SEG+L +IL+NTA+SISI KGI RSIL VVG  L+ S + P S  +     
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMEN-- 58

Query: 61  SAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCG 120
           + E  + +L+P  SY+EEFR++ PAI ++ +  C+  EHDCSVCLT+FEP+S+IN+LSCG
Sbjct: 59  APESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCG 118

Query: 121 HLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW 158
           HLFH+VCLEKWLDY N+TCPLCRTPL+PE ED  SCFW
Sbjct: 119 HLFHRVCLEKWLDYWNLTCPLCRTPLMPE-EDTASCFW 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720999|ref|NP_001236683.1| uncharacterized protein LOC100305532 [Glycine max] gi|255625823|gb|ACU13256.1| unknown [Glycine max]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 120/157 (76%), Gaps = 4/157 (2%)

Query: 1   MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPYSYFASPQVV 60
           MGL+S+P+ SEG+LC++L+NT +SISI KGI R+IL +VG  L  SS+        P   
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLPSSST--SPSSPDPSQA 58

Query: 61  SAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCG 120
           + E ++++LSP  SY+EEFR++ P ++++++   +  EHDCSVCLT+FEP+S+IN LSCG
Sbjct: 59  APESFELHLSPSESYIEEFRSRTPTLRFDSVCCSKRLEHDCSVCLTQFEPESEINRLSCG 118

Query: 121 HLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCF 157
           HLFHKVCLEKWLDY N+TCPLCRTPL+P  EDD  CF
Sbjct: 119 HLFHKVCLEKWLDYWNITCPLCRTPLMP--EDDTPCF 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494236|gb|AFK35184.1| unknown [Lotus japonicus]

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/160 (56%), Positives = 119/160 (74%), Gaps = 8/160 (5%)

Query: 1   MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADSSSPPYSYFASPQVV 60
           MGL+S+P+ SEG+LC+IL+NTAMSISIVK IFR+ L +VG  ++ S SPP     +P   
Sbjct: 1   MGLSSLPAPSEGVLCIILVNTAMSISIVKAIFRTFLHIVGIHVS-SPSPPTENSQNPPDP 59

Query: 61  SAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHC--EDAEHDCSVCLTEFEPQSDINNLS 118
           S   Y   LSP   ++E+FR++ P +++E++     +  EH+CSVCLT+FEP+S+IN L 
Sbjct: 60  SEFQY---LSPSEGFIEDFRSKTPTLRFESVCSSCKQQPEHECSVCLTKFEPESEINCLP 116

Query: 119 CGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW 158
           CGHLFHK CLEKWLDY N+TCPLCRTPL+P  EDD SCFW
Sbjct: 117 CGHLFHKACLEKWLDYWNITCPLCRTPLMP--EDDASCFW 154

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2059793	162	XERICO [Arabidopsis thaliana (	1.0	0.975	0.524	1.2e-42
TAIR|locus:2082757	170	BRH1 "brassinosteroid-responsi	0.417	0.388	0.485	3.3e-15
TAIR|locus:4515102735	133	AT1G67856 [Arabidopsis thalian	0.835	0.992	0.306	1.4e-14
TAIR|locus:2038766	147	RHA2B "RING-H2 finger protein	0.531	0.571	0.397	4.9e-14
TAIR|locus:2102311	167	AT3G43430 [Arabidopsis thalian	0.753	0.712	0.315	3.1e-12
TAIR|locus:505006414	126	AT4G00305 [Arabidopsis thalian	0.424	0.531	0.367	3.9e-12
TAIR|locus:2128293	157	RHA1B "RING-H2 finger A1B" [Ar	0.436	0.439	0.397	1e-11
ASPGD|ASPL0000044927	238	AN1658 [Emericella nidulans (t	0.518	0.344	0.317	1.3e-11
TAIR|locus:1006230720	113	AT1G24580 [Arabidopsis thalian	0.708	0.991	0.302	1.3e-11
TAIR|locus:2195498	166	AT1G63840 [Arabidopsis thalian	0.810	0.771	0.298	1.7e-11

TAIR|locus:2059793 XERICO [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 85/162 (52%), Positives = 113/162 (69%)

Query:     1 MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADXXXXXXXXFASPQVV 60
             MGL+S+P  SEGMLC+IL+NTA+SISIVKGI RS L +VG  L+           S +  
Sbjct:     1 MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query:    61 S-AEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCE-DAEHDCSVCLTEFEPQSDINNLS 118
             S +E +D  +  P SY+EEFRN+ P +++E+L  C+  A+++CSVCL++F+  S+IN L 
Sbjct:    61 STSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLK 120

Query:   119 CGHLFHKVCLEKWLDYLNVTCPLCRTPLI--PEFEDDPSCFW 158
             CGHLFHK CLEKW+DY N+TCPLCRTPL+  PE     S  W
Sbjct:   121 CGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDHQLSSNVW 162

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0009687 "abscisic acid metabolic process" evidence=IMP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

TAIR|locus:2082757 BRH1 "brassinosteroid-responsive RING-H2" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 33/68 (48%), Positives = 48/68 (70%)

Query:    84 PAIKYETLLHC-EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPL 141
             P IK+E L +  ED   +C+VCL EFE + +I  L +C H+FH+ CL++W+D+   TCPL
Sbjct:    76 PVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHDQKTCPL 135

Query:   142 CRTPLIPE 149
             CRTP +P+
Sbjct:   136 CRTPFVPD 143

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:4515102735 AT1G67856 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 45/147 (30%), Positives = 76/147 (51%)

Query:     1 MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADXXXXXXXXFASPQVV 60
             MG++  P+ASEG++ +++MNT +S+S+VK + RS++ +V  +  +               
Sbjct:     1 MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDD---QDHED 57

Query:    61 SAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SC 119
             S     ++++   S  E   ++N           E    DC VCL  F+ + +++ L SC
Sbjct:    58 SKRRRRISITHFESLCENRGSRN-----------EREAMDCCVCLCGFKEEEEVSELVSC 106

Query:   120 GHLFHKVCLEKWLDYLNVTCPLCRTPL 146
              H FH  CL+KW    + TCPLCR+ L
Sbjct:   107 KHYFHSACLDKWFGNNHTTCPLCRSIL 133

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2038766 RHA2B "RING-H2 finger protein 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 35/88 (39%), Positives = 52/88 (59%)

Query:    61 SAEPYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCG 120
             S+ P  V ++  LS + +  N N    Y    + ++A  DC VCL++ +   ++  L C 
Sbjct:    38 SSAPVVV-VTSNLSVLADQLNLNRLFSYR---YSDNAASDCIVCLSKLKTGEEVRKLDCR 93

Query:   121 HLFHKVCLEKWLDYLNVTCPLCRTPLIP 148
             H+FHK CLE WL +LN  CPLCR+PL+P
Sbjct:    94 HVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2102311 AT3G43430 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 46/146 (31%), Positives = 77/146 (52%)

Query:    17 ILMNTAMSISIVKGIFRSILKVVGFQLADXXXXXXXXFASPQVVSAEPYDVNLSPPLSYV 76
             +L  TA+ I++++ IF  IL+   ++            +SP + S++    +L+     V
Sbjct:    15 VLYKTALIITVLRWIFAWILR---YRSRSSSSSSSQSSSSPSI-SSQTIKESLA-----V 65

Query:    77 EEFRNQNPAIKYETLLHCEDAEHD-CSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY 134
               FR+   A++         A +D C+VCL + E + +I  L +C H+FH+ C+++WLDY
Sbjct:    66 SAFRD---AVERSPA-----AINDMCAVCLGDLEDEDEIRELRNCTHVFHRDCIDRWLDY 117

Query:   135 L--------NVTCPLCRTPLIPEFED 152
                      + TCPLCRTPL+P F D
Sbjct:   118 ECCGGDDDNHRTCPLCRTPLLPSFTD 143

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:505006414 AT4G00305 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 25/68 (36%), Positives = 43/68 (63%)

Query:    84 PAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLC 142
             PA K+E +    +    C +C  EF+   ++  L +C H++HK C+++W+    +TCPLC
Sbjct:    54 PATKFEDISSRVNPPESCRICQDEFDGGDEVRCLRNCVHVYHKTCIDRWIQDDKMTCPLC 113

Query:   143 RTPLIPEF 150
             RTP++P+F
Sbjct:   114 RTPIVPDF 121

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2128293 RHA1B "RING-H2 finger A1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 29/73 (39%), Positives = 43/73 (58%)

Query:    84 PAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWL-DYLNVTCPL 141
             P +++  LL   D E  C+VCL++F     I  L  CGH+FH  CL++W+ D   +TCP+
Sbjct:    70 PVVRFSDLL--TDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPI 127

Query:   142 CRTPLIPEFEDDP 154
             CR   +PE +  P
Sbjct:   128 CRNRFLPEEKSTP 140

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

ASPGD|ASPL0000044927 AN1658 [Emericella nidulans (taxid:162425)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 26/82 (31%), Positives = 45/82 (54%)

Query:    68 NLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVC 127
             NL+ PL+  E+    + ++++E      DA  +C++C+ +F+    I  L+C H++H  C
Sbjct:   134 NLALPLNASEKEVQVSASVEHEVASSHGDAHRECAICMEDFDDDDSIRALTCDHIYHATC 193

Query:   128 LEKWLDYLNVTCPLCRTPLIPE 149
             L+ W       CPLC+T   PE
Sbjct:   194 LDPWFTKRQARCPLCKTCYYPE 215

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:1006230720 AT1G24580 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 39/129 (30%), Positives = 68/129 (52%)

Query:    19 MNTAMSISIVKGIFRSILKVVGFQLADXXXXXXXXFASPQVVSAEPYDVNLSPPLSYVEE 78
             MNT +SI+++K + RS+ ++V  +             S   +  EP D  ++  +S + +
Sbjct:     1 MNTVVSITLLKNMVRSVFQIVASETE-----------SSMEIDDEPEDDFVTRRIS-ITQ 48

Query:    79 FRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNV 137
             F++    I+ E     E+   +C VCL  F+ + +++ L SC H FH+ CL+ W    + 
Sbjct:    49 FKSLCENIEEEE----EEKGVECCVCLCGFKEEEEVSELVSCKHFFHRACLDNWFGNNHT 104

Query:   138 TCPLCRTPL 146
             TCPLCR+ L
Sbjct:   105 TCPLCRSIL 113

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2195498 AT1G63840 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 43/144 (29%), Positives = 70/144 (48%)

Query:    10 SEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLADXXXXXXXXFASPQVVSAEPYDV-- 67
             SE +L  I       + +++ +  ++ K++G  L D        F  P+ VS    D   
Sbjct:     8 SELLLPKIFFYLLSFLGLIRKLISTMFKIIG--LPD--------FLEPEPVSTSWPDPPP 57

Query:    68 NLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLS-CGHLFHKV 126
              L+ P S         P +++  +   E     C+VCL +FE   +I  L+ C H+FH+ 
Sbjct:    58 TLTKPDSAAILAGEMLPVVRFSDINRPES--ECCAVCLYDFENDDEIRRLTNCRHIFHRG 115

Query:   127 CLEKWL-DYLNVTCPLCRTPLIPE 149
             CL++W+  Y  +TCPLCRT  IP+
Sbjct:   116 CLDRWMMGYNQMTCPLCRTQFIPD 139

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	4e-12
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	7e-11
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	6e-09
smart00184	40	smart00184, RING, Ring finger	2e-07
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	2e-07
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	6e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	4e-05
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	5e-04
pfam11793	70	pfam11793, FANCL_C, FANCL C-terminal domain	0.001
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	0.003

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 57.4 bits (139), Expect = 4e-12
 Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 99  HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTP 145
            +C +CL EFEP  ++  L CGH+FHK CL+KWL   + TCPLCR P
Sbjct: 1   DECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRS-SNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 54.0 bits (130), Expect = 7e-11
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
           +C +CL EF     +  L CGH+F + C++KWL     TCPLCRTP+
Sbjct: 1   ECPICLEEFRE--PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 53.5 bits (128), Expect = 6e-09
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148
           +C++C++ F     +  L C H FH  C++KWL   +  CP+CRT + P
Sbjct: 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373

Length = 374

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 44.8 bits (106), Expect = 2e-07
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLC 142
           C +CL E+    D   L CGH F + C+ KWL+  N TCP+C
Sbjct: 1   CPICLEEYL--KDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 44.4 bits (105), Expect = 2e-07
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLC 142
           C +CL E +    I  L CGHLF   C+  WL+  NVTCPLC
Sbjct: 1   CPICLEEPKDPVTI--LPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 41.6 bits (98), Expect = 6e-06
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 11/56 (19%)

Query: 98  EHDCSVCLTEFEPQSDINNLS----------CGHLFHKVCLEKWLDYLNVTCPLCR 143
           +  C++C   F+                   CGH FH  C+ +WL     TCPLCR
Sbjct: 19  DDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLK-TRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 73  LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTE-FEPQSDI---------NNLSCGHL 122
             +    ++ N      T     +++  C++C+ E F P  +            L CGH+
Sbjct: 262 ARFRRATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI 321

Query: 123 FHKVCLEKWLDYLNVTCPLCRTPLI 147
            H  CL+ WL+    TCP+CR P+I
Sbjct: 322 LHLHCLKNWLER-QQTCPICRRPVI 345

Length = 491

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRT 144
           C +CL        +    CGH+F + C+ ++L      CP+CRT
Sbjct: 5   CPICLDLLR--DPVVLTPCGHVFCRECILRYLK-KKSKCPICRT 45

Length = 45

>gnl|CDD|204746 pfam11793, FANCL_C, FANCL C-terminal domain

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 15/64 (23%)

Query: 98  EHDCSVCLTEFEPQSDI-----NNLSCGHLFHKVCLEKWL-------DYLNV---TCPLC 142
           E +C +C        +I     +N  CG  FH  CL +WL          NV   TCP C
Sbjct: 2   EIECGICYAYRLDGGEIPDISCDNPKCGLPFHIACLYEWLRTLRDSRQSFNVSFGTCPYC 61

Query: 143 RTPL 146
           +  +
Sbjct: 62  KAKI 65

This domain is found at the C-terminus of the Fancl protein in humans which is the putative E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits of the Fanconi anaemia gene products form a multisubunit nuclear complex which is required for mono-ubiquitination of a downstream FA protein, FANCD2. Length = 70

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 13/69 (18%)

Query: 87  KYETLLHCEDAEHDCSVCLTEFEPQSD--INNL------SCGHLFHKVCLEKWLDYLNVT 138
           +YE L +    + +C++C+   E   D  I N+      +C H+F   C++ W      T
Sbjct: 164 EYEKL-YNRSKDKECAICM---EKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNT 218

Query: 139 CPLCRTPLI 147
           CP+CRTP I
Sbjct: 219 CPVCRTPFI 227

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.76
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.57
PHA02929	238	N1R/p28-like protein; Provisional	99.35
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.34
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.31
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.25
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.15
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.11
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.11
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.05
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.03
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.99
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.99
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.97
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.92
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.92
PF14634	44	zf-RING_5: zinc-RING finger domain	98.9
PHA02926	242	zinc finger-like protein; Provisional	98.9
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.88
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.86
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.81
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.7
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.69
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.58
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.52
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.52
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.49
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.46
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.45
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.39
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.38
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.37
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.37
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.32
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.29
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	98.27
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.23
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.17
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	98.15
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.12
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.04
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	98.0
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.0
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.86
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.8
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.76
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.72
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.65
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.65
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.63
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.51
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	97.35
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.34
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.3
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.25
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.17
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	96.88
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.85
COG5152	259	Uncharacterized conserved protein, contains RING a	96.71
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.71
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.7
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.61
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.61
PHA02862	156	5L protein; Provisional	96.6
KOG2660	331	consensus Locus-specific chromosome binding protei	96.54
PHA02825	162	LAP/PHD finger-like protein; Provisional	96.54
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.49
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	96.46
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.42
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.32
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	96.24
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	96.23
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.04
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	95.96
KOG4739	233	consensus Uncharacterized protein involved in syna	95.92
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.92
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	95.83
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.75
PHA03096	284	p28-like protein; Provisional	95.7
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	95.66
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.5
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	95.44
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.18
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.05
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	95.02
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	94.83
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	94.74
PF04641	260	Rtf2: Rtf2 RING-finger	94.73
KOG1940	276	consensus Zn-finger protein [General function pred	94.57
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	94.3
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	94.21
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.9
KOG1001	674	consensus Helicase-like transcription factor HLTF/	93.68
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	93.53
KOG3053	293	consensus Uncharacterized conserved protein [Funct	93.26
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	93.26
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	93.11
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	92.65
KOG4367	699	consensus Predicted Zn-finger protein [Function un	91.76
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	91.35
KOG1609	323	consensus Protein involved in mRNA turnover and st	90.96
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	90.78
KOG3002	299	consensus Zn finger protein [General function pred	90.4
KOG3899	381	consensus Uncharacterized conserved protein [Funct	90.22
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	90.11
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	88.67
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	85.76
KOG0298	1394	consensus DEAD box-containing helicase-like transc	84.13
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	83.21
COG5109	396	Uncharacterized conserved protein, contains RING Z	83.03
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	82.07
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	81.48
KOG0269	839	consensus WD40 repeat-containing protein [Function	80.67

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=3.4e-18  Score=136.71  Aligned_cols=77  Identities=21%  Similarity=0.603  Sum_probs=64.9

Q ss_pred             cchHHHHHhhCCcceeeccccCCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539           73 LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF  150 (158)
Q Consensus        73 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~  150 (158)
                      .++.+...+++|...|....+.... ..|+||+|+|++|+++|.|||+|.||..||++|+...+..||+|++.+....
T Consensus       205 ~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  205 NRLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS  281 (348)
T ss_pred             hhhHHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence            3566788889999999887544444 6999999999999999999999999999999999854566999999876543

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.57  E-value=7.6e-16  Score=89.03  Aligned_cols=44  Identities=45%  Similarity=1.265  Sum_probs=39.6

Q ss_pred             cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCcccc
Q 031539           99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR  143 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr  143 (158)
                      ++|+||++.+.+++.++.++|+|.||.+|+.+|++. +.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            479999999988889999999999999999999984 78999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.35  E-value=8.1e-13  Score=101.65  Aligned_cols=75  Identities=24%  Similarity=0.538  Sum_probs=54.3

Q ss_pred             cchHHHHHhhCCcceeecccc-CCCCCcccccccccccCCCC-----eEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539           73 LSYVEEFRNQNPAIKYETLLH-CEDAEHDCSVCLTEFEPQSD-----INNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL  146 (158)
Q Consensus        73 ~~~~~~~~~~lp~~~~~~~~~-~~~~~~~C~iCl~~~~~~~~-----~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~  146 (158)
                      .+..+.+.+.+|....+.... ....+.+|+||++.+.+.+.     ...++|+|.||..||.+|++ .+.+||+||..+
T Consensus       148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~  226 (238)
T PHA02929        148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPF  226 (238)
T ss_pred             cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEe
Confidence            344666777788876443211 23456899999998754331     23447999999999999998 688999999987


Q ss_pred             CC
Q 031539          147 IP  148 (158)
Q Consensus       147 ~~  148 (158)
                      ..
T Consensus       227 ~~  228 (238)
T PHA02929        227 IS  228 (238)
T ss_pred             eE
Confidence            63

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=6.3e-13  Score=103.83  Aligned_cols=53  Identities=36%  Similarity=0.916  Sum_probs=48.1

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      +.+-+|+||++.|.+++..+.+||+|.||..|+++|+...+..||+||..+++
T Consensus       321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            44579999999999999999999999999999999998557789999999876

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.31  E-value=1.6e-12  Score=82.97  Aligned_cols=46  Identities=43%  Similarity=1.024  Sum_probs=35.6

Q ss_pred             CCcccccccccccCC----------CCeEEeCCCChhhHhhHHHHHhcCCCCCcccc
Q 031539           97 AEHDCSVCLTEFEPQ----------SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR  143 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~----------~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr  143 (158)
                      .++.|+||++.+.+.          ..+...+|+|.||..||.+|++ .+.+||+||
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-QNNTCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence            345699999999322          2344457999999999999998 588999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=5.2e-12  Score=101.18  Aligned_cols=64  Identities=36%  Similarity=0.929  Sum_probs=49.4

Q ss_pred             hhCCcceeeccccCCCCCcccccccccc-cCC---------CCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           81 NQNPAIKYETLLHCEDAEHDCSVCLTEF-EPQ---------SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        81 ~~lp~~~~~~~~~~~~~~~~C~iCl~~~-~~~---------~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      +..|....+++   ..+|..|.||++++ +.+         .++..|||||.+|-+|++.|++ .+++||+||.++.-
T Consensus       273 ~~~~t~t~eql---~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~if  346 (491)
T COG5243         273 AMYPTATEEQL---TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPVIF  346 (491)
T ss_pred             hhcchhhhhhh---cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCcccc
Confidence            34444444444   66788999999994 333         2468899999999999999998 69999999999543

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=2.3e-11  Score=94.57  Aligned_cols=52  Identities=35%  Similarity=0.839  Sum_probs=45.5

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF  150 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~  150 (158)
                      ...+..|.+|++..   +.+..+||||.||+.||.+|.. .+..||+||..+.++.
T Consensus       236 ~~a~~kC~LCLe~~---~~pSaTpCGHiFCWsCI~~w~~-ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  236 PEATRKCSLCLENR---SNPSATPCGHIFCWSCILEWCS-EKAECPLCREKFQPSK  287 (293)
T ss_pred             CCCCCceEEEecCC---CCCCcCcCcchHHHHHHHHHHc-cccCCCcccccCCCcc
Confidence            34557999999887   7889999999999999999998 5888999999887754

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.11  E-value=4.9e-11  Score=70.59  Aligned_cols=46  Identities=37%  Similarity=0.973  Sum_probs=39.7

Q ss_pred             CcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      +..|.||++..   .....+||+|. |+..|+.+|++ ....||+||+++.
T Consensus         2 ~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENP---RDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSB---SSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred             cCCCccCCccC---CceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence            46899999987   57888899999 99999999998 6899999999875

...

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.11  E-value=7.7e-11  Score=87.60  Aligned_cols=50  Identities=32%  Similarity=0.794  Sum_probs=41.5

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc---------------CCCCCccccCcCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY---------------LNVTCPLCRTPLIP  148 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---------------~~~~CP~Cr~~~~~  148 (158)
                      .++.+|+||++.+   ..++.++|+|.||..||.+|+..               ....||+||..+..
T Consensus        16 ~~~~~CpICld~~---~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         16 GGDFDCNICLDQV---RDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CCccCCccCCCcC---CCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            4567999999998   56778899999999999999852               13479999998854

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.05  E-value=1.4e-10  Score=66.13  Aligned_cols=39  Identities=41%  Similarity=0.987  Sum_probs=30.5

Q ss_pred             cccccccccCCCCeEEeCCCChhhHhhHHHHHhcCC---CCCccc
Q 031539          101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLN---VTCPLC  142 (158)
Q Consensus       101 C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~---~~CP~C  142 (158)
                      |+||++.|   .+++.++|||.|+..||.+|++..+   ..||.|
T Consensus         1 CpiC~~~~---~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLF---KDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB----SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhh---CCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999   7899999999999999999997533   359987

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.03  E-value=2.7e-10  Score=64.82  Aligned_cols=45  Identities=49%  Similarity=1.221  Sum_probs=35.8

Q ss_pred             ccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539          100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL  146 (158)
Q Consensus       100 ~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~  146 (158)
                      +|+||++.+.  +.....+|+|.||..|+++|++..+..||.||..+
T Consensus         1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            5899999882  33444459999999999999984467899998754

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=3.4e-10  Score=82.49  Aligned_cols=53  Identities=25%  Similarity=0.660  Sum_probs=43.0

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      .+....|+|||+.+.+. .+..+.|||+||+.||+.-++ ....||+||+.|...
T Consensus       128 ~~~~~~CPiCl~~~sek-~~vsTkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEK-VPVSTKCGHVFCSQCIKDALK-NTNKCPTCRKKITHK  180 (187)
T ss_pred             cccccCCCceecchhhc-cccccccchhHHHHHHHHHHH-hCCCCCCcccccchh
Confidence            45568999999999533 235578999999999999998 588999999877543

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.99  E-value=3.1e-10  Score=63.71  Aligned_cols=38  Identities=47%  Similarity=1.109  Sum_probs=31.7

Q ss_pred             cccccccccCCCCe-EEeCCCChhhHhhHHHHHhcCCCCCccc
Q 031539          101 CSVCLTEFEPQSDI-NNLSCGHLFHKVCLEKWLDYLNVTCPLC  142 (158)
Q Consensus       101 C~iCl~~~~~~~~~-~~l~C~H~fh~~Ci~~w~~~~~~~CP~C  142 (158)
                      |+||++.+.   ++ +.++|||.||..|+.+|++. +..||+|
T Consensus         1 C~iC~~~~~---~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELR---DPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-S---SEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCccc---CcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            789999984   45 67899999999999999995 8899987

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.97  E-value=6.7e-10  Score=72.09  Aligned_cols=52  Identities=35%  Similarity=0.837  Sum_probs=38.9

Q ss_pred             CCCccccccccccc--------CCCC-eEEe-CCCChhhHhhHHHHHhcC--CCCCccccCcCC
Q 031539           96 DAEHDCSVCLTEFE--------PQSD-INNL-SCGHLFHKVCLEKWLDYL--NVTCPLCRTPLI  147 (158)
Q Consensus        96 ~~~~~C~iCl~~~~--------~~~~-~~~l-~C~H~fh~~Ci~~w~~~~--~~~CP~Cr~~~~  147 (158)
                      ..++.|.||...|+        .|+. +..+ .|+|.||..||.+|++.+  +..||+||+...
T Consensus        19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            34788999998885        2222 2233 699999999999999852  467999999754

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=6.6e-10  Score=95.26  Aligned_cols=51  Identities=39%  Similarity=0.961  Sum_probs=44.3

Q ss_pred             CCCCcccccccccccCCCC--eEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539           95 EDAEHDCSVCLTEFEPQSD--INNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL  146 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~--~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~  146 (158)
                      ...+..|+||.+.+..+++  +..++|+|.||..|+..|++ ..++||+||..+
T Consensus       288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-r~qtCP~CR~~~  340 (543)
T KOG0802|consen  288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-RQQTCPTCRTVL  340 (543)
T ss_pred             hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHH-HhCcCCcchhhh
Confidence            3457899999999976654  78899999999999999999 599999999944

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=8.3e-10  Score=83.64  Aligned_cols=52  Identities=33%  Similarity=0.742  Sum_probs=42.9

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc--CCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY--LNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~~CP~Cr~~~~~~  149 (158)
                      .....+|.|||+.-   ++++++.|||.||+.||-+|+..  .+..||+|++.+..+
T Consensus        44 ~~~~FdCNICLd~a---kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~   97 (230)
T KOG0823|consen   44 DGGFFDCNICLDLA---KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID   97 (230)
T ss_pred             CCCceeeeeecccc---CCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence            45668999999887   67888999999999999999974  234589999987654

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.90  E-value=1.6e-09  Score=62.40  Aligned_cols=44  Identities=34%  Similarity=0.923  Sum_probs=38.0

Q ss_pred             ccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccC
Q 031539          100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRT  144 (158)
Q Consensus       100 ~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~  144 (158)
                      .|++|.+.+.+....+.++|+|.|+..|+..... ....||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~-~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG-KSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC-CCCCCcCCCC
Confidence            4899999996566788889999999999999883 5788999985

>PHA02926 zinc finger-like protein; Provisional

Probab=98.90  E-value=1.2e-09  Score=82.49  Aligned_cols=53  Identities=28%  Similarity=0.715  Sum_probs=39.0

Q ss_pred             CCCCcccccccccccCCC-----CeEEe-CCCChhhHhhHHHHHhcC-----CCCCccccCcCC
Q 031539           95 EDAEHDCSVCLTEFEPQS-----DINNL-SCGHLFHKVCLEKWLDYL-----NVTCPLCRTPLI  147 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~-----~~~~l-~C~H~fh~~Ci~~w~~~~-----~~~CP~Cr~~~~  147 (158)
                      .+.+.+|+||++..-+..     .-..| +|+|.||..||..|.+..     ..+||+||..+.
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            456689999999863221     12234 699999999999999732     245999999765

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.88  E-value=1.4e-09  Score=61.55  Aligned_cols=39  Identities=51%  Similarity=1.183  Sum_probs=33.1

Q ss_pred             cccccccccCCCCeE-EeCCCChhhHhhHHHHHh-cCCCCCccc
Q 031539          101 CSVCLTEFEPQSDIN-NLSCGHLFHKVCLEKWLD-YLNVTCPLC  142 (158)
Q Consensus       101 C~iCl~~~~~~~~~~-~l~C~H~fh~~Ci~~w~~-~~~~~CP~C  142 (158)
                      |+||++.+   .... .++|+|.||..|+.+|++ .....||+|
T Consensus         1 C~iC~~~~---~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPF---EDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBC---SSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccc---cCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            78999998   4444 789999999999999998 456679987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00184 RING Ring finger

Probab=98.86  E-value=3.3e-09  Score=58.21  Aligned_cols=39  Identities=49%  Similarity=1.163  Sum_probs=33.5

Q ss_pred             cccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccc
Q 031539          101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLC  142 (158)
Q Consensus       101 C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~C  142 (158)
                      |+||++..   .....++|+|.||..|++.|++..+..||+|
T Consensus         1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            78999884   6788899999999999999997446679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>smart00504 Ubox Modified RING finger domain

Probab=98.81  E-value=4.9e-09  Score=64.53  Aligned_cols=46  Identities=28%  Similarity=0.482  Sum_probs=40.5

Q ss_pred             cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ..|+||.+.+   ..+..++|||+|++.||.+|++. +.+||+|+..+..
T Consensus         2 ~~Cpi~~~~~---~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVM---KDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcC---CCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh
Confidence            4799999999   55788899999999999999984 8899999988754

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.70  E-value=1.2e-08  Score=83.84  Aligned_cols=50  Identities=30%  Similarity=0.635  Sum_probs=42.8

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      .....|+||++.+   ..++.++|+|.||..||..|+. ....||+||..+...
T Consensus        24 e~~l~C~IC~d~~---~~PvitpCgH~FCs~CI~~~l~-~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        24 DTSLRCHICKDFF---DVPVLTSCSHTFCSLCIRRCLS-NQPKCPLCRAEDQES   73 (397)
T ss_pred             ccccCCCcCchhh---hCccCCCCCCchhHHHHHHHHh-CCCCCCCCCCccccc
Confidence            4567999999999   5667889999999999999998 467899999987653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.69  E-value=2e-08  Score=63.86  Aligned_cols=49  Identities=31%  Similarity=0.747  Sum_probs=37.6

Q ss_pred             cccccccccccCCCCeEEe--CCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           99 HDCSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ..|+-|+..+..+++....  .|+|.||..||.+|+. .+..||++|+...-
T Consensus        32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~-Tk~~CPld~q~w~~   82 (88)
T COG5194          32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLD-TKGVCPLDRQTWVL   82 (88)
T ss_pred             CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHh-hCCCCCCCCceeEE
Confidence            4566666655556655444  5999999999999998 58999999997644

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=3.2e-08  Score=76.35  Aligned_cols=51  Identities=37%  Similarity=0.733  Sum_probs=42.5

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHH-HHhcCCCCCccccCcCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEK-WLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~-w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ..+..|++|++..   +.+..++|||.||..||.. |-+++-..||+||+.+.++
T Consensus       213 ~~d~kC~lC~e~~---~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk  264 (271)
T COG5574         213 LADYKCFLCLEEP---EVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK  264 (271)
T ss_pred             ccccceeeeeccc---CCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence            4568999999988   7888999999999999999 8774333499999987654

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.52  E-value=6.3e-08  Score=55.35  Aligned_cols=39  Identities=36%  Similarity=0.823  Sum_probs=22.6

Q ss_pred             cccccccccC-CCCeEEeCCCChhhHhhHHHHHhcC---CCCCc
Q 031539          101 CSVCLTEFEP-QSDINNLSCGHLFHKVCLEKWLDYL---NVTCP  140 (158)
Q Consensus       101 C~iCl~~~~~-~~~~~~l~C~H~fh~~Ci~~w~~~~---~~~CP  140 (158)
                      |+||.+ |.. ...+..|+|||+|+.+|++++.++.   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 743 3357889999999999999999742   33576

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=4.5e-08  Score=75.77  Aligned_cols=54  Identities=28%  Similarity=0.684  Sum_probs=43.4

Q ss_pred             CCCCcccccccccccCCC-------CeEEeCCCChhhHhhHHHHHh-cCCCCCccccCcCCC
Q 031539           95 EDAEHDCSVCLTEFEPQS-------DINNLSCGHLFHKVCLEKWLD-YLNVTCPLCRTPLIP  148 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~-------~~~~l~C~H~fh~~Ci~~w~~-~~~~~CP~Cr~~~~~  148 (158)
                      .-++..|+||-..+....       +...|.|+|+||..||+.|.. .++++||.|+..+..
T Consensus       221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence            456789999998884333       677889999999999999974 367899999877643

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.49  E-value=1.8e-07  Score=54.99  Aligned_cols=43  Identities=30%  Similarity=0.757  Sum_probs=33.1

Q ss_pred             ccccccccccCCCCeEEeCCC-----ChhhHhhHHHHHhcC-CCCCcccc
Q 031539          100 DCSVCLTEFEPQSDINNLSCG-----HLFHKVCLEKWLDYL-NVTCPLCR  143 (158)
Q Consensus       100 ~C~iCl~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~-~~~CP~Cr  143 (158)
                      .|.||++ ..+++.+...||.     |.+|..|+++|+... +.+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899998 3344566678875     899999999999643 45799994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=2.7e-07  Score=76.72  Aligned_cols=52  Identities=40%  Similarity=1.011  Sum_probs=39.9

Q ss_pred             CCcccccccccccC---CCC-----------eEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           97 AEHDCSVCLTEFEP---QSD-----------INNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        97 ~~~~C~iCl~~~~~---~~~-----------~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ...+|+||+...+-   +..           -..+||.|.||..|+..|....+-.||+||.++++
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            34699999998731   111           12348999999999999998546689999999875

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.45  E-value=6.9e-08  Score=76.98  Aligned_cols=49  Identities=24%  Similarity=0.607  Sum_probs=43.5

Q ss_pred             CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF  150 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~  150 (158)
                      -..|.||.+.|   ..+.++||+|.||.-||...+. .+..||.|+..+....
T Consensus        23 lLRC~IC~eyf---~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~   71 (442)
T KOG0287|consen   23 LLRCGICFEYF---NIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESD   71 (442)
T ss_pred             HHHHhHHHHHh---cCceeccccchHHHHHHHHHhc-cCCCCCceecccchhh
Confidence            36999999999   6888899999999999999998 5999999998876543

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=1.7e-07  Score=78.19  Aligned_cols=48  Identities=29%  Similarity=0.812  Sum_probs=39.8

Q ss_pred             CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC----CCCCccccCcCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL----NVTCPLCRTPLIP  148 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~----~~~CP~Cr~~~~~  148 (158)
                      +..|+||+++.   ..+..+.|||+||..||-.++...    ...||+||..|..
T Consensus       186 ~~~CPICL~~~---~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPP---SVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCC---CcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            78999999987   566677799999999999988642    2469999998866

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.38  E-value=2.7e-07  Score=58.77  Aligned_cols=49  Identities=29%  Similarity=0.502  Sum_probs=38.8

Q ss_pred             CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ...|+|+.+.|   ..++.+++||.|.+.+|..|+...+.+||+|+..+...
T Consensus         4 ~f~CpIt~~lM---~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    4 EFLCPITGELM---RDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGB-TTTSSB----SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             ccCCcCcCcHh---hCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            46899999999   78899999999999999999985488999999887653

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.37  E-value=9.4e-08  Score=78.55  Aligned_cols=55  Identities=33%  Similarity=0.800  Sum_probs=41.9

Q ss_pred             CCcccccccccccCCCC-eEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCCCCC
Q 031539           97 AEHDCSVCLTEFEPQSD-INNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDP  154 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~-~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~  154 (158)
                      +-.+|+||||.+..... ++...|.|.||..|+..|.   ..+||+||....+...+..
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~---~~scpvcR~~q~p~~ve~~  229 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW---DSSCPVCRYCQSPSVVESS  229 (493)
T ss_pred             cCCCcchhHhhcCccccceeeeecccccchHHHhhcc---cCcChhhhhhcCcchhhhh
Confidence            34699999999954432 3445799999999999996   4789999998775444433

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.37  E-value=1.6e-07  Score=73.51  Aligned_cols=50  Identities=26%  Similarity=0.579  Sum_probs=43.5

Q ss_pred             CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFE  151 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~  151 (158)
                      -..|.||-+.+   ..+..++|||.||.-||.+.+. .+..||+||.+......
T Consensus        25 ~lrC~IC~~~i---~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrl   74 (391)
T COG5432          25 MLRCRICDCRI---SIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRL   74 (391)
T ss_pred             HHHhhhhhhee---ecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhc
Confidence            36999999999   6788889999999999999998 59999999998655443

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.32  E-value=1e-07  Score=60.30  Aligned_cols=51  Identities=29%  Similarity=0.697  Sum_probs=24.0

Q ss_pred             Cccccccccccc-CCCCeEEe----CCCChhhHhhHHHHHhc---CC-------CCCccccCcCCC
Q 031539           98 EHDCSVCLTEFE-PQSDINNL----SCGHLFHKVCLEKWLDY---LN-------VTCPLCRTPLIP  148 (158)
Q Consensus        98 ~~~C~iCl~~~~-~~~~~~~l----~C~H~fh~~Ci~~w~~~---~~-------~~CP~Cr~~~~~  148 (158)
                      +.+|.||.+... .++.+...    .|+..||..|+.+|+..   .+       ..||.|+++|.-
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            468999999875 44444333    59999999999999973   11       149999998753

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=2.5e-07  Score=58.47  Aligned_cols=51  Identities=33%  Similarity=0.811  Sum_probs=36.5

Q ss_pred             CCccccccccccc--------CCCC-eEEe-CCCChhhHhhHHHHHhcC--CCCCccccCcCC
Q 031539           97 AEHDCSVCLTEFE--------PQSD-INNL-SCGHLFHKVCLEKWLDYL--NVTCPLCRTPLI  147 (158)
Q Consensus        97 ~~~~C~iCl~~~~--------~~~~-~~~l-~C~H~fh~~Ci~~w~~~~--~~~CP~Cr~~~~  147 (158)
                      .++.|.||.-+|.        .|+. +.++ .|.|.||..||.+|+..+  +..||+||+...
T Consensus        19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            4458888888884        2222 3333 499999999999999742  345999998753

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=4.2e-07  Score=71.48  Aligned_cols=55  Identities=25%  Similarity=0.551  Sum_probs=46.5

Q ss_pred             CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCCCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDP  154 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~  154 (158)
                      -+.+|+||+...   ..+..++|+|.||..||+.-..+.+.+|++||.++..+.-.++
T Consensus         6 ~~~eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p   60 (324)
T KOG0824|consen    6 KKKECLICYNTG---NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP   60 (324)
T ss_pred             cCCcceeeeccC---CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence            356999999776   6778899999999999999887778889999999988765443

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.23  E-value=1e-06  Score=70.11  Aligned_cols=52  Identities=25%  Similarity=0.585  Sum_probs=38.0

Q ss_pred             CcccccccccccCCCCeEEe--CCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      +..||+|...--.....+.+  +|||.||.+|++..+......||.|+..+...
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~   56 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN   56 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence            46899999853222222222  79999999999997764566899999887654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=7.2e-07  Score=69.37  Aligned_cols=46  Identities=35%  Similarity=0.839  Sum_probs=39.5

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRT  144 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~  144 (158)
                      ..+...|+||++.|.   .+..++|+|.||..|+..++. ....||.||.
T Consensus        10 ~~~~~~C~iC~~~~~---~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~   55 (386)
T KOG2177|consen   10 LQEELTCPICLEYFR---EPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP   55 (386)
T ss_pred             ccccccChhhHHHhh---cCccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence            345689999999994   458889999999999999987 5678999993

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=98.15  E-value=4.1e-07  Score=74.05  Aligned_cols=64  Identities=28%  Similarity=0.599  Sum_probs=49.1

Q ss_pred             hCCcceeeccccCCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC-CCCCccccCcCCC
Q 031539           82 QNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL-NVTCPLCRTPLIP  148 (158)
Q Consensus        82 ~lp~~~~~~~~~~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~~CP~Cr~~~~~  148 (158)
                      ......|+-+.+.++.-.-|-||-+.-   ..+.+-||||..|..|+..|-... .++||+||..+..
T Consensus       353 ~VtqEQyeLYceMgsTFeLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  353 KVTQEQYELYCEMGSTFELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             eeeHHHHHHHHHccchHHHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            334445555556677778999999764   567778999999999999998543 6789999998743

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.12  E-value=8.2e-07  Score=78.83  Aligned_cols=52  Identities=29%  Similarity=0.791  Sum_probs=38.4

Q ss_pred             CCCccccccccccc--CCCC--eEEeCCCChhhHhhHHHHHhc-CCCCCccccCcCC
Q 031539           96 DAEHDCSVCLTEFE--PQSD--INNLSCGHLFHKVCLEKWLDY-LNVTCPLCRTPLI  147 (158)
Q Consensus        96 ~~~~~C~iCl~~~~--~~~~--~~~l~C~H~fh~~Ci~~w~~~-~~~~CP~Cr~~~~  147 (158)
                      ++..+|+||...+.  +..-  .+--.|.|.||..|+-+|++. .+.+||+||..++
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            35579999998873  1111  122249999999999999975 3567999998775

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=3.7e-06  Score=56.19  Aligned_cols=28  Identities=36%  Similarity=0.895  Sum_probs=25.2

Q ss_pred             CCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539          118 SCGHLFHKVCLEKWLDYLNVTCPLCRTPL  146 (158)
Q Consensus       118 ~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~  146 (158)
                      .|+|.||..||.+|++ .+..||+|.+.-
T Consensus        80 ~CNHaFH~hCisrWlk-tr~vCPLdn~eW  107 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLK-TRNVCPLDNKEW  107 (114)
T ss_pred             ecchHHHHHHHHHHHh-hcCcCCCcCcce
Confidence            5999999999999998 699999997653

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=3.8e-06  Score=68.10  Aligned_cols=52  Identities=29%  Similarity=0.859  Sum_probs=38.0

Q ss_pred             CCCcccccccccccCCC--C--eEEe-CCCChhhHhhHHHHHhcC------CCCCccccCcCC
Q 031539           96 DAEHDCSVCLTEFEPQS--D--INNL-SCGHLFHKVCLEKWLDYL------NVTCPLCRTPLI  147 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~--~--~~~l-~C~H~fh~~Ci~~w~~~~------~~~CP~Cr~~~~  147 (158)
                      ..+..|.||++...+..  .  -.++ +|.|.||..||+.|-...      ...||.||....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            45679999999875332  1  1233 599999999999998532      367999987543

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=1.1e-06  Score=70.49  Aligned_cols=52  Identities=31%  Similarity=0.552  Sum_probs=43.1

Q ss_pred             CCCcccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF  150 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~  150 (158)
                      ..+..|+|||+.+   ......+ |.|-||..||..-++..+..||.||+.+....
T Consensus        41 ~~~v~c~icl~ll---k~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr   93 (381)
T KOG0311|consen   41 DIQVICPICLSLL---KKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR   93 (381)
T ss_pred             hhhhccHHHHHHH---HhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence            3457999999998   4555555 99999999999999877889999999986654

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=1.1e-05  Score=64.94  Aligned_cols=48  Identities=33%  Similarity=0.778  Sum_probs=39.8

Q ss_pred             CcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ..+|.||+.+-   ....+|||.|. .|..|.+.-. .++..||+||+++...
T Consensus       290 gkeCVIClse~---rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~l  338 (349)
T KOG4265|consen  290 GKECVICLSES---RDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEEL  338 (349)
T ss_pred             CCeeEEEecCC---cceEEecchhhehhHhHHHHHH-HhhcCCCccccchHhh
Confidence            56999999887   57889999997 5899988865 4688999999988543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=1.2e-05  Score=65.42  Aligned_cols=45  Identities=29%  Similarity=0.983  Sum_probs=33.8

Q ss_pred             cccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCC--CCCcccc
Q 031539           99 HDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLN--VTCPLCR  143 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~--~~CP~Cr  143 (158)
                      ..|.||.+.+....++..+. |||+||..|+..|+...-  .+||+|+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~   52 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ   52 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence            58999965553333444444 999999999999998643  4799998

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=8.3e-06  Score=71.10  Aligned_cols=49  Identities=29%  Similarity=0.641  Sum_probs=41.8

Q ss_pred             cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539           99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF  150 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~  150 (158)
                      ..|++|-...   ...++..|+|.||..|+.+-+......||.|.+.+.+++
T Consensus       644 LkCs~Cn~R~---Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  644 LKCSVCNTRW---KDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             eeCCCccCch---hhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            6999999777   456667899999999999998766788999999887754

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=9e-06  Score=48.19  Aligned_cols=50  Identities=26%  Similarity=0.655  Sum_probs=36.9

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      .+.+++|.||++.-   -..+.-.|+|. +|..|-.+-++..+..||+||+++.
T Consensus         4 ~~~~dECTICye~p---vdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    4 GQWSDECTICYEHP---VDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cccccceeeeccCc---chHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            34558999999765   23334479986 5888987766646788999999874

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.65  E-value=2.3e-05  Score=61.85  Aligned_cols=54  Identities=26%  Similarity=0.727  Sum_probs=43.9

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc----------------------CCCCCccccCcCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY----------------------LNVTCPLCRTPLIP  148 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----------------------~~~~CP~Cr~~~~~  148 (158)
                      .-..-+|.|||--|.+++....++|.|.||..|+.+++..                      ....||+||..|..
T Consensus       112 n~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~  187 (368)
T KOG4445|consen  112 NHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI  187 (368)
T ss_pred             CCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence            3345799999999998888999999999999999887752                      12359999988754

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.65  E-value=1.2e-05  Score=49.42  Aligned_cols=47  Identities=26%  Similarity=0.653  Sum_probs=24.0

Q ss_pred             CcccccccccccCCCCeEE-eCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539           98 EHDCSVCLTEFEPQSDINN-LSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF  150 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~-l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~  150 (158)
                      -..|++|.+.+   .++.. ..|.|.||+.|+..-+   ...||+|+.+.-.++
T Consensus         7 lLrCs~C~~~l---~~pv~l~~CeH~fCs~Ci~~~~---~~~CPvC~~Paw~qD   54 (65)
T PF14835_consen    7 LLRCSICFDIL---KEPVCLGGCEHIFCSSCIRDCI---GSECPVCHTPAWIQD   54 (65)
T ss_dssp             TTS-SSS-S-----SS-B---SSS--B-TTTGGGGT---TTB-SSS--B-S-SS
T ss_pred             hcCCcHHHHHh---cCCceeccCccHHHHHHhHHhc---CCCCCCcCChHHHHH
Confidence            36899999999   55654 4699999999998743   355999988765443

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.63  E-value=1.1e-05  Score=70.67  Aligned_cols=53  Identities=25%  Similarity=0.479  Sum_probs=42.8

Q ss_pred             CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFE  151 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~  151 (158)
                      ...|++|+..+.++......+|+|.||..|+..|-+ ...+||+||..+.....
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~v~V  175 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGEVKV  175 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhheeee
Confidence            357888888887655555567999999999999998 69999999988765443

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=4.8e-05  Score=62.90  Aligned_cols=49  Identities=37%  Similarity=0.798  Sum_probs=42.8

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ..+.+|.||...+   ..++.+||||.||..||++-+. +...||.||..+..
T Consensus        82 ~sef~c~vc~~~l---~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRAL---YPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhc---CCCccccccccccHHHHHHHhc-cCCCCccccccccc
Confidence            4568999999988   6788889999999999999777 67889999998874

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00017  Score=54.94  Aligned_cols=57  Identities=28%  Similarity=0.635  Sum_probs=44.9

Q ss_pred             CCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc-------CCCCCccccCcCCCCCC
Q 031539           94 CEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY-------LNVTCPLCRTPLIPEFE  151 (158)
Q Consensus        94 ~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-------~~~~CP~Cr~~~~~~~~  151 (158)
                      +.+.+..|..|-..+..|+. ..|.|-|.||.+|+++|-..       ....||.|...|++...
T Consensus        46 DsDY~pNC~LC~t~La~gdt-~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N  109 (299)
T KOG3970|consen   46 DSDYNPNCRLCNTPLASGDT-TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN  109 (299)
T ss_pred             hcCCCCCCceeCCccccCcc-eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence            34566799999999988764 45789999999999999863       12359999999877543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.34  E-value=0.00013  Score=59.59  Aligned_cols=49  Identities=31%  Similarity=0.745  Sum_probs=38.7

Q ss_pred             CCCcccccccccccCC-CCeEEeCCCChhhHhhHHHHHhc-CCCCCccccC
Q 031539           96 DAEHDCSVCLTEFEPQ-SDINNLSCGHLFHKVCLEKWLDY-LNVTCPLCRT  144 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~-~~~~CP~Cr~  144 (158)
                      +.+..|..|-+.+... +....|||.|+||..|+.+.+.+ ...+||.||+
T Consensus       363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            3457899999988433 45677899999999999999963 3457999993

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.30  E-value=0.00014  Score=60.38  Aligned_cols=52  Identities=31%  Similarity=0.656  Sum_probs=43.0

Q ss_pred             CCCCcccccccccccCCCCeEE-eCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINN-LSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF  150 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~-l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~  150 (158)
                      .+.+..|++|...+.   .+.. ..|+|.||..|+..|+.. +..||.|+..+....
T Consensus        18 ~~~~l~C~~C~~vl~---~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~   70 (391)
T KOG0297|consen   18 LDENLLCPICMSVLR---DPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAE   70 (391)
T ss_pred             CcccccCcccccccc---CCCCCCCCCCcccccccchhhcc-CcCCcccccccchhh
Confidence            466789999999994   4444 589999999999999984 899999988775543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00022  Score=58.48  Aligned_cols=48  Identities=40%  Similarity=1.009  Sum_probs=36.1

Q ss_pred             CcccccccccccCC-C-CeEEeCCCChhhHhhHHHHHhc-CCCCCccccCc
Q 031539           98 EHDCSVCLTEFEPQ-S-DINNLSCGHLFHKVCLEKWLDY-LNVTCPLCRTP  145 (158)
Q Consensus        98 ~~~C~iCl~~~~~~-~-~~~~l~C~H~fh~~Ci~~w~~~-~~~~CP~Cr~~  145 (158)
                      ...|+||++.++.. + ....+.|+|.|...||++|+.+ .+..||.|...
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            46899999998533 3 2444569999999999999952 23569999654

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.17  E-value=0.00022  Score=43.16  Aligned_cols=44  Identities=25%  Similarity=0.638  Sum_probs=27.8

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc-CCCCCcc
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY-LNVTCPL  141 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~~CP~  141 (158)
                      .....|+|.+..|+  +.++...|+|.|-+..|.+|++. ....||.
T Consensus         9 ~~~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            44579999999994  33444579999999999999942 3456998

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.001  Score=54.74  Aligned_cols=37  Identities=32%  Similarity=0.736  Sum_probs=30.6

Q ss_pred             CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHh
Q 031539           97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLD  133 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~  133 (158)
                      ....|.||+++.....-...+||+|+||++|++.++.
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~  219 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT  219 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence            4479999999964335667789999999999999986

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.85  E-value=0.00059  Score=57.90  Aligned_cols=53  Identities=30%  Similarity=0.745  Sum_probs=42.2

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc----CCCCCccccCcCCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY----LNVTCPLCRTPLIPEF  150 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~~CP~Cr~~~~~~~  150 (158)
                      ..++..|.+|.++-   +......|.|.||+.|+.++...    .+.+||.|-..+....
T Consensus       533 nk~~~~C~lc~d~a---ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl  589 (791)
T KOG1002|consen  533 NKGEVECGLCHDPA---EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL  589 (791)
T ss_pred             ccCceeecccCChh---hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence            34557999999887   56778899999999999888753    3568999988776543

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.71  E-value=0.00073  Score=50.59  Aligned_cols=43  Identities=21%  Similarity=0.590  Sum_probs=37.1

Q ss_pred             cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCc
Q 031539           99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTP  145 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~  145 (158)
                      ..|.||-+.|   ..++++.|||.||..|..+=++ +...|-+|-+.
T Consensus       197 F~C~iCKkdy---~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~  239 (259)
T COG5152         197 FLCGICKKDY---ESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKA  239 (259)
T ss_pred             eeehhchhhc---cchhhhhcchhHHHHHHHHHhc-cCCcceecchh
Confidence            4899999999   6778889999999999988776 58889999653

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.71  E-value=0.0011  Score=38.45  Aligned_cols=41  Identities=32%  Similarity=0.770  Sum_probs=26.2

Q ss_pred             cccccccccCCCCeEEeCCC--C---hhhHhhHHHHHhc-CCCCCccc
Q 031539          101 CSVCLTEFEPQSDINNLSCG--H---LFHKVCLEKWLDY-LNVTCPLC  142 (158)
Q Consensus       101 C~iCl~~~~~~~~~~~l~C~--H---~fh~~Ci~~w~~~-~~~~CP~C  142 (158)
                      |-||++.-.+++ ....||+  -   ..|.+|+.+|+.. .+.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            678998865443 4556754  4   6799999999974 34568887

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.70  E-value=0.0011  Score=38.53  Aligned_cols=45  Identities=29%  Similarity=0.738  Sum_probs=22.3

Q ss_pred             cccccccccCCCCeEEe--CCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539          101 CSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLCRTPL  146 (158)
Q Consensus       101 C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~  146 (158)
                      |++|.+++.. ......  +|++..+..|+..-++.....||-||.+.
T Consensus         1 cp~C~e~~d~-~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDE-TDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--C-CCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCccccccc-CCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            7889999832 233444  48899999999988764577899999864

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.61  E-value=0.0015  Score=61.13  Aligned_cols=66  Identities=26%  Similarity=0.617  Sum_probs=47.1

Q ss_pred             hCCcceeeccccCCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC---------CCCCccccCcCC
Q 031539           82 QNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL---------NVTCPLCRTPLI  147 (158)
Q Consensus        82 ~lp~~~~~~~~~~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---------~~~CP~Cr~~~~  147 (158)
                      -+|-..-+......+.++.|-||+.+--.....+.|.|+|.||..|..+-+.+.         -..||+|..++.
T Consensus      3470 CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3470 CLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             cccccccChhhhhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            445554433323356778999999876555577889999999999998877631         136999988764

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.0019  Score=50.61  Aligned_cols=50  Identities=24%  Similarity=0.606  Sum_probs=39.1

Q ss_pred             CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc-CCCCCccccCcCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY-LNVTCPLCRTPLI  147 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~-~~~~CP~Cr~~~~  147 (158)
                      .+.+.+|++|.+.-   ..+... +|+|.+|..|+..-... ...+||.|-.++.
T Consensus       236 ~t~~~~C~~Cg~~P---tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPP---TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCC---CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            45678999999876   556555 59999999999886642 2468999987765

>PHA02862 5L protein; Provisional

Probab=96.60  E-value=0.0022  Score=45.71  Aligned_cols=47  Identities=28%  Similarity=0.712  Sum_probs=33.8

Q ss_pred             CcccccccccccCCCCeEEeCCC-----ChhhHhhHHHHHhc-CCCCCccccCcCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCG-----HLFHKVCLEKWLDY-LNVTCPLCRTPLIP  148 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~-~~~~CP~Cr~~~~~  148 (158)
                      ++.|-||.+.-+  +.  .-||.     ...|.+|+.+|++. ++..|++|+.++.-
T Consensus         2 ~diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          2 SDICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CCEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            358999998742  22  24544     56799999999974 34579999987643

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.54  E-value=0.00075  Score=54.01  Aligned_cols=52  Identities=23%  Similarity=0.511  Sum_probs=41.1

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF  150 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~  150 (158)
                      .....|.+|-..|.  +...+.-|-|.||++||-+.+. ...+||.|...+-...
T Consensus        13 n~~itC~LC~GYli--DATTI~eCLHTFCkSCivk~l~-~~~~CP~C~i~ih~t~   64 (331)
T KOG2660|consen   13 NPHITCRLCGGYLI--DATTITECLHTFCKSCIVKYLE-ESKYCPTCDIVIHKTH   64 (331)
T ss_pred             ccceehhhccceee--cchhHHHHHHHHHHHHHHHHHH-HhccCCccceeccCcc
Confidence            34479999999995  3334446999999999999998 4899999988775543

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=96.54  E-value=0.0032  Score=45.61  Aligned_cols=51  Identities=27%  Similarity=0.716  Sum_probs=36.0

Q ss_pred             CCCCcccccccccccCCCCeEEeCCC--C---hhhHhhHHHHHhcC-CCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCG--H---LFHKVCLEKWLDYL-NVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~--H---~fh~~Ci~~w~~~~-~~~CP~Cr~~~~~~  149 (158)
                      ...+..|-||.+.-.  +.  .-||.  .   ..|.+|+++|+... ...|++|++.+.-.
T Consensus         5 s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          5 SLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence            345679999998742  22  23654  4   45999999999743 45699999887544

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.49  E-value=0.0016  Score=45.94  Aligned_cols=36  Identities=17%  Similarity=0.635  Sum_probs=29.8

Q ss_pred             CcccccccccccCCCCeEEeCCC------ChhhHhhHHHHHh
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCG------HLFHKVCLEKWLD  133 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~------H~fh~~Ci~~w~~  133 (158)
                      ..+|.||++...+.+-++.++|+      |.||..|+++|-+
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            46999999999774567777776      8999999999954

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=96.46  E-value=0.001  Score=44.68  Aligned_cols=34  Identities=29%  Similarity=0.685  Sum_probs=27.3

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHH
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEK  130 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~  130 (158)
                      +++..|++|-..+.. ......||+|.||..|+++
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~r  109 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIKR  109 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeCCCeEEecccccC
Confidence            456789999999965 3566679999999999753

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.0099  Score=47.74  Aligned_cols=47  Identities=23%  Similarity=0.471  Sum_probs=37.5

Q ss_pred             CCCCcccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCc
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTP  145 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~  145 (158)
                      ..+...|++|+..-   .++..+. -|-+||..|+...+. ....||+-..+
T Consensus       297 ~~~~~~CpvClk~r---~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p  344 (357)
T KOG0826|consen  297 PPDREVCPVCLKKR---QNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYP  344 (357)
T ss_pred             CCccccChhHHhcc---CCCceEEecceEEeHHHHHHHHH-hcCCCCccCCc
Confidence            34557999999776   5566665 799999999999998 68999986544

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.0072  Score=49.09  Aligned_cols=67  Identities=21%  Similarity=0.367  Sum_probs=47.8

Q ss_pred             HHHHhhCCcceeecccc--CCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539           77 EEFRNQNPAIKYETLLH--CEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        77 ~~~~~~lp~~~~~~~~~--~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      ++..+++|..+-.....  ...++..|+||...-   -.....||+|.-|+.||.+-+- ..+.|=+|+..+.
T Consensus       399 ~r~~~~l~~~~~~~~~~~lp~sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~  467 (489)
T KOG4692|consen  399 NRASSQLPERKEESFNKDLPDSEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVI  467 (489)
T ss_pred             HHHHhhcchhhHHhhcCCCCCcccccCcceeccc---chhhccCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence            34445555554333322  246788999999653   3455679999999999999887 4888999988775

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.003  Score=50.22  Aligned_cols=48  Identities=27%  Similarity=0.727  Sum_probs=40.4

Q ss_pred             cccccccccccCCC---CeEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539           99 HDCSVCLTEFEPQS---DINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL  146 (158)
Q Consensus        99 ~~C~iCl~~~~~~~---~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~  146 (158)
                      ..|-||-++|..++   .++.|.|||.++..|+..-+.+....||+||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            58999999996553   5788899999999999998876566799999874

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=96.23  E-value=0.0022  Score=57.00  Aligned_cols=51  Identities=25%  Similarity=0.726  Sum_probs=36.2

Q ss_pred             CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCC------CCccccCc
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNV------TCPLCRTP  145 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~------~CP~Cr~~  145 (158)
                      ....++|.||.+.+.-.+.+-.- .|-|+||..||.+|-+....      .||.|+..
T Consensus       188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv  245 (950)
T KOG1952|consen  188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV  245 (950)
T ss_pred             hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence            44568999999998533322222 38899999999999874222      49999743

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.04  E-value=0.008  Score=48.74  Aligned_cols=59  Identities=24%  Similarity=0.632  Sum_probs=43.1

Q ss_pred             CcceeeccccCCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHh-cCCCCCccccCc
Q 031539           84 PAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLD-YLNVTCPLCRTP  145 (158)
Q Consensus        84 p~~~~~~~~~~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~-~~~~~CP~Cr~~  145 (158)
                      |...-.+..+..+++.-|.||.+..   .....+||+|..|..|.-+--. +.+..||+||..
T Consensus        47 PnlttsSaddtDEen~~C~ICA~~~---TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE  106 (493)
T COG5236          47 PNLTTSSADDTDEENMNCQICAGST---TYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE  106 (493)
T ss_pred             CccccccccccccccceeEEecCCc---eEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence            4444444444456678999999887   6788899999999999755321 257889999875

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.0049  Score=45.49  Aligned_cols=50  Identities=28%  Similarity=0.777  Sum_probs=34.3

Q ss_pred             ccccccccccCCCCeEE----eCCCChhhHhhHHHHHhc-----CC-----CCCccccCcCCCC
Q 031539          100 DCSVCLTEFEPQSDINN----LSCGHLFHKVCLEKWLDY-----LN-----VTCPLCRTPLIPE  149 (158)
Q Consensus       100 ~C~iCl~~~~~~~~~~~----l~C~H~fh~~Ci~~w~~~-----~~-----~~CP~Cr~~~~~~  149 (158)
                      .|.||...--+|..+-.    ..|+..||.-|+..|++.     ++     ..||.|..++.-+
T Consensus       167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            55566555444443333    369999999999999974     11     2499999887654

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.92  E-value=0.0042  Score=47.80  Aligned_cols=43  Identities=28%  Similarity=0.661  Sum_probs=31.8

Q ss_pred             ccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539          100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL  146 (158)
Q Consensus       100 ~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~  146 (158)
                      .|..|...-. ++.-..+.|.|+||..|...-   ....||+|+.++
T Consensus         5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~---~~~~C~lCkk~i   47 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS---SPDVCPLCKKSI   47 (233)
T ss_pred             EeccccccCC-CCceeeeechhhhhhhhcccC---Ccccccccccee
Confidence            5777766543 566677789999999997662   233899999985

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.0046  Score=50.15  Aligned_cols=45  Identities=29%  Similarity=0.564  Sum_probs=34.6

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      ...+.|.||+++.   .....+||||.-|  |..--.+  -..||+||+.+.
T Consensus       303 ~~p~lcVVcl~e~---~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~  347 (355)
T KOG1571|consen  303 PQPDLCVVCLDEP---KSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR  347 (355)
T ss_pred             CCCCceEEecCCc---cceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence            3457999999987   4578899999977  7665443  466999998764

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=95.83  E-value=0.017  Score=47.28  Aligned_cols=30  Identities=27%  Similarity=0.802  Sum_probs=23.1

Q ss_pred             CCChhhHhhHHHHHhcC------------CCCCccccCcCCC
Q 031539          119 CGHLFHKVCLEKWLDYL------------NVTCPLCRTPLIP  148 (158)
Q Consensus       119 C~H~fh~~Ci~~w~~~~------------~~~CP~Cr~~~~~  148 (158)
                      |....|.+|+.+|+..+            +..||+||+.+..
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi  352 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI  352 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence            55677999999999642            3469999998754

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.75  E-value=0.0034  Score=49.64  Aligned_cols=44  Identities=27%  Similarity=0.554  Sum_probs=37.4

Q ss_pred             cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539           99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL  146 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~  146 (158)
                      ..|-||-..|   ..+++..|+|.||..|...=++ ....|.+|-+..
T Consensus       242 f~c~icr~~f---~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYF---YRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQT  285 (313)
T ss_pred             cccccccccc---ccchhhcCCceeehhhhccccc-cCCcceeccccc
Confidence            4699999999   6788899999999999888776 468899996643

>PHA03096 p28-like protein; Provisional

Probab=95.70  E-value=0.0043  Score=49.33  Aligned_cols=46  Identities=26%  Similarity=0.502  Sum_probs=31.8

Q ss_pred             cccccccccccCCC----CeEEeC-CCChhhHhhHHHHHhcC--CCCCccccC
Q 031539           99 HDCSVCLTEFEPQS----DINNLS-CGHLFHKVCLEKWLDYL--NVTCPLCRT  144 (158)
Q Consensus        99 ~~C~iCl~~~~~~~----~~~~l~-C~H~fh~~Ci~~w~~~~--~~~CP~Cr~  144 (158)
                      -.|.||++...+..    .=..|+ |.|.||..|+..|....  +.+||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            58999999875432    112344 99999999999998642  234555544

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=95.66  E-value=0.006  Score=36.36  Aligned_cols=45  Identities=29%  Similarity=0.593  Sum_probs=32.4

Q ss_pred             cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ..|-.|...   +.+-..+||+|..+..|++-+-   -+.||+|-.++...
T Consensus         8 ~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~~~   52 (55)
T PF14447_consen    8 QPCVFCGFV---GTKGTVLPCGHLICDNCFPGER---YNGCPFCGTPFEFD   52 (55)
T ss_pred             eeEEEcccc---ccccccccccceeeccccChhh---ccCCCCCCCcccCC
Confidence            345555433   3566778999999999988753   46799998877553

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.50  E-value=0.011  Score=47.15  Aligned_cols=43  Identities=26%  Similarity=0.617  Sum_probs=34.7

Q ss_pred             cccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccC
Q 031539           99 HDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRT  144 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~  144 (158)
                      ..|+.|...+   -.+..++ |+|.||..||..-+-..-..||.|..
T Consensus       275 LkCplc~~Ll---rnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLL---RNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhh---hCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            6899999888   4555566 99999999999887645678999943

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.44  E-value=0.0044  Score=45.05  Aligned_cols=30  Identities=33%  Similarity=0.836  Sum_probs=26.8

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhH
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHK  125 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~  125 (158)
                      +++-+|.||+|+++.|+.+..|||-.++|+
T Consensus       175 ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  175 DDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            455699999999999999999999988885

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.18  E-value=0.019  Score=46.53  Aligned_cols=55  Identities=27%  Similarity=0.562  Sum_probs=38.5

Q ss_pred             CCCCcccccccccccCCCCeE-EeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDIN-NLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~-~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      +++++-|+.|++++.-.++-. -.|||-..|.-|+......-+..||-||+....+
T Consensus        11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de   66 (480)
T COG5175          11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE   66 (480)
T ss_pred             ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence            445556999999995433322 2368888888887776554567899999876554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.05  E-value=0.012  Score=52.45  Aligned_cols=41  Identities=32%  Similarity=0.781  Sum_probs=32.7

Q ss_pred             CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRT  144 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~  144 (158)
                      ...|..|-..++  -..+...|+|.||..|+.+    ....||.|+.
T Consensus       840 ~skCs~C~~~Ld--lP~VhF~CgHsyHqhC~e~----~~~~CP~C~~  880 (933)
T KOG2114|consen  840 VSKCSACEGTLD--LPFVHFLCGHSYHQHCLED----KEDKCPKCLP  880 (933)
T ss_pred             eeeecccCCccc--cceeeeecccHHHHHhhcc----CcccCCccch
Confidence            369999998883  2445568999999999883    5678999976

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.02  E-value=0.0034  Score=49.64  Aligned_cols=43  Identities=28%  Similarity=0.745  Sum_probs=32.9

Q ss_pred             CcccccccccccCCCCeEEeCCCChh-hHhhHHHHHhcCCCCCccccCcCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHLF-HKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      +.-|.||++.-   -....|+|||.. |.+|-++     -..||+||+-+.+
T Consensus       300 ~~LC~ICmDaP---~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~r  343 (350)
T KOG4275|consen  300 RRLCAICMDAP---RDCVFLECGHMVTCTKCGKR-----MNECPICRQYIVR  343 (350)
T ss_pred             HHHHHHHhcCC---cceEEeecCcEEeehhhccc-----cccCchHHHHHHH
Confidence            56899999876   678899999965 6777544     2369999987643

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=94.83  E-value=0.036  Score=40.18  Aligned_cols=34  Identities=21%  Similarity=0.631  Sum_probs=23.0

Q ss_pred             CCcccccccccccCCCCeEEeCC------------CChh-hHhhHHHHHh
Q 031539           97 AEHDCSVCLTEFEPQSDINNLSC------------GHLF-HKVCLEKWLD  133 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l~C------------~H~f-h~~Ci~~w~~  133 (158)
                      ++..|+||++.-   .+.+.|-|            +..+ |..|+++..+
T Consensus         1 ed~~CpICme~P---HNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    1 EDVTCPICMEHP---HNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CCccCceeccCC---CceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            356899999876   45555533            3222 8889999765

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=94.74  E-value=0.011  Score=33.56  Aligned_cols=42  Identities=24%  Similarity=0.619  Sum_probs=21.9

Q ss_pred             cccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCC-CCccc
Q 031539          101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNV-TCPLC  142 (158)
Q Consensus       101 C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~-~CP~C  142 (158)
                      |.+|-+....|.......|+-.+|..|++.+++..+. .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            5667776654433333358889999999999974333 59987

; PDB: 3NW0_A 2CT0_A.

>PF04641 Rtf2: Rtf2 RING-finger

Probab=94.73  E-value=0.04  Score=43.25  Aligned_cols=53  Identities=26%  Similarity=0.590  Sum_probs=40.4

Q ss_pred             CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ......|||...+|........+ +|||+|...++++--  ....||+|-.++...
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEE  163 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccC
Confidence            34557999999999544444445 899999999999963  356799998887643

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=94.57  E-value=0.022  Score=44.99  Aligned_cols=47  Identities=32%  Similarity=0.757  Sum_probs=38.0

Q ss_pred             CCcccccccccccCCC-CeEEeCCCChhhHhhHHHHHhcCCCCCccccC
Q 031539           97 AEHDCSVCLTEFEPQS-DINNLSCGHLFHKVCLEKWLDYLNVTCPLCRT  144 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~  144 (158)
                      ....|++|.+.+..+. .+..++|+|..|..|+.+... .+.+||+|.+
T Consensus       157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~-~~y~CP~C~~  204 (276)
T KOG1940|consen  157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMIC-EGYTCPICSK  204 (276)
T ss_pred             ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhc-cCCCCCcccc
Confidence            3445999999885553 566789999999999999887 4599999977

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=94.30  E-value=0.063  Score=31.97  Aligned_cols=34  Identities=35%  Similarity=0.743  Sum_probs=29.1

Q ss_pred             CCcccccccccccCCCCeEEeC-CCChhhHhhHHH
Q 031539           97 AEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEK  130 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~  130 (158)
                      ....|++|-+.|++++.+++-| |+-.+|+.|.++
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            4568999999998888888887 999999999654

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.21  E-value=0.32  Score=40.16  Aligned_cols=48  Identities=23%  Similarity=0.414  Sum_probs=39.2

Q ss_pred             cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCC--CCCccccCcC
Q 031539           99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLN--VTCPLCRTPL  146 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~--~~CP~Cr~~~  146 (158)
                      -.|||=-+.-.++..+..|.|||+..++-+.+-.++..  ..||+|-...
T Consensus       335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            58888777766777899999999999999999887655  5699995543

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.90  E-value=0.068  Score=41.54  Aligned_cols=51  Identities=24%  Similarity=0.410  Sum_probs=42.4

Q ss_pred             CCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ..+.|+||...+.+-.....| ||+|+|+..|+.+... .-..||+|-.++..
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkd  271 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKD  271 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcc
Confidence            347899999999766667777 6999999999999887 57889999776644

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=93.68  E-value=0.033  Score=49.36  Aligned_cols=45  Identities=36%  Similarity=0.735  Sum_probs=37.3

Q ss_pred             cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCC-CCccccCcCC
Q 031539           99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNV-TCPLCRTPLI  147 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~-~CP~Cr~~~~  147 (158)
                      ..|.+|++ .   +.....+|+|.||..|+..-+..... .||.||..+.
T Consensus       455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence            69999998 3   67888899999999999998865444 4999998664

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=93.53  E-value=0.053  Score=41.99  Aligned_cols=48  Identities=25%  Similarity=0.572  Sum_probs=35.2

Q ss_pred             CCCcccccccccccCCCCeEEe--C-CCChhhHhhHHHHHhcCCCCCc--ccc
Q 031539           96 DAEHDCSVCLTEFEPQSDINNL--S-CGHLFHKVCLEKWLDYLNVTCP--LCR  143 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l--~-C~H~fh~~Ci~~w~~~~~~~CP--~Cr  143 (158)
                      ..+..||+|..+---...+..+  | |-|.+|.+|+++.+......||  -|.
T Consensus         8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~   60 (314)
T COG5220           8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG   60 (314)
T ss_pred             hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence            3456999999765333344444  6 9999999999999986566798  553

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.26  E-value=0.05  Score=42.45  Aligned_cols=55  Identities=31%  Similarity=0.730  Sum_probs=38.2

Q ss_pred             CCCCcccccccccccCCCCeEE---eCCC-----ChhhHhhHHHHHhcCC-------CCCccccCcCCCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINN---LSCG-----HLFHKVCLEKWLDYLN-------VTCPLCRTPLIPEFE  151 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~---l~C~-----H~fh~~Ci~~w~~~~~-------~~CP~Cr~~~~~~~~  151 (158)
                      .+.+..|=||+..=+  ++.+.   =||.     |..|..|+.+|+.++.       .+||-|+.......+
T Consensus        17 ~e~eR~CWiCF~Tde--Dn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P   86 (293)
T KOG3053|consen   17 QELERCCWICFATDE--DNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFP   86 (293)
T ss_pred             cccceeEEEEeccCc--ccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeecc
Confidence            456678999998643  33322   1543     8899999999997532       259999988765544

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=93.26  E-value=0.11  Score=36.58  Aligned_cols=52  Identities=21%  Similarity=0.574  Sum_probs=38.8

Q ss_pred             CCcccccccccccCCCCeEEe-C---CCChhhHhhHHHHHhc--CCCCCccccCcCCCCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNL-S---CGHLFHKVCLEKWLDY--LNVTCPLCRTPLIPEFE  151 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l-~---C~H~fh~~Ci~~w~~~--~~~~CP~Cr~~~~~~~~  151 (158)
                      .-.+|.||.|.-   .+.+.| |   ||-..|..|...-++.  ....||.|+.++..+..
T Consensus        79 ~lYeCnIC~etS---~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~  136 (140)
T PF05290_consen   79 KLYECNICKETS---AEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSS  136 (140)
T ss_pred             CceeccCccccc---chhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccccc
Confidence            447999999887   445556 3   9999999988766653  35679999998866543

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=93.11  E-value=0.1  Score=41.42  Aligned_cols=48  Identities=25%  Similarity=0.610  Sum_probs=33.6

Q ss_pred             ccccccccccCCCCeEEe--CCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539          100 DCSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus       100 ~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      .|+.|-..---...+..+  +|+|..|.+|++.-+......||-|...+-
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence            477776543222222222  799999999999999866678999976553

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.65  E-value=0.07  Score=48.07  Aligned_cols=37  Identities=24%  Similarity=0.605  Sum_probs=27.9

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHh
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLD  133 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~  133 (158)
                      +.++.|.+|...+-.. .-...||+|.||++|+.+-..
T Consensus       815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHHH
Confidence            4568999999888422 344569999999999966543

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=91.76  E-value=0.1  Score=43.76  Aligned_cols=35  Identities=26%  Similarity=0.541  Sum_probs=30.3

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHh
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLD  133 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~  133 (158)
                      +++..|+||...|   .++++|||+|..|..|...-+.
T Consensus         2 eeelkc~vc~~f~---~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFY---REPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhc---cCceEeecccHHHHHHHHhhcc
Confidence            4567999999999   7889999999999999876654

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.35  E-value=0.01  Score=48.74  Aligned_cols=51  Identities=29%  Similarity=0.669  Sum_probs=42.5

Q ss_pred             CcccccccccccCC-CCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           98 EHDCSVCLTEFEPQ-SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        98 ~~~C~iCl~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ...|+||.+.++.. +++..+-|+|..|..|+..|+. ....||.||..+...
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~-~~~kl~~~~rel~~~  247 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLA-TKRKLPSCRRELPKN  247 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHH-HHHHhHHHHhhhhhh
Confidence            35899999988654 5677778999999999999998 478899999887653

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=90.96  E-value=0.19  Score=39.92  Aligned_cols=54  Identities=30%  Similarity=0.677  Sum_probs=37.0

Q ss_pred             CCCcccccccccccCCCC-eEEeCCC-----ChhhHhhHHHHHhc-CCCCCccccCcCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSD-INNLSCG-----HLFHKVCLEKWLDY-LNVTCPLCRTPLIPE  149 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~-~~~l~C~-----H~fh~~Ci~~w~~~-~~~~CP~Cr~~~~~~  149 (158)
                      .++..|.||..+...... ....||.     +..|+.|++.|+.. .+..|.+|.......
T Consensus        76 ~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   76 SSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             CCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            335789999997643221 3455655     56699999999974 245699998765443

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=90.78  E-value=0.12  Score=41.53  Aligned_cols=44  Identities=27%  Similarity=0.576  Sum_probs=29.8

Q ss_pred             cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539           99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      -.|.-|-....  -.-|.+||+|+||.+|-..  . .-+.||.|-..|.
T Consensus        91 HfCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~-~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   91 HFCDRCDFPIA--IYGRMIPCKHVFCLECARS--D-SDKICPLCDDRVQ  134 (389)
T ss_pred             EeecccCCcce--eeecccccchhhhhhhhhc--C-ccccCcCcccHHH
Confidence            36666665542  2456779999999999654  1 2457999966553

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=90.40  E-value=0.22  Score=40.00  Aligned_cols=46  Identities=33%  Similarity=0.667  Sum_probs=33.0

Q ss_pred             CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      +-.+||||.+.+.  ..+.+-+=||.-|..|-.+    ....||.||.++..
T Consensus        47 ~lleCPvC~~~l~--~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~   92 (299)
T KOG3002|consen   47 DLLDCPVCFNPLS--PPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN   92 (299)
T ss_pred             hhccCchhhccCc--ccceecCCCcEehhhhhhh----hcccCCcccccccc
Confidence            3379999999983  2222333469999999654    46779999998873

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.22  E-value=0.2  Score=39.88  Aligned_cols=30  Identities=27%  Similarity=0.610  Sum_probs=23.6

Q ss_pred             CCChhhHhhHHHHHhc------------CCCCCccccCcCCC
Q 031539          119 CGHLFHKVCLEKWLDY------------LNVTCPLCRTPLIP  148 (158)
Q Consensus       119 C~H~fh~~Ci~~w~~~------------~~~~CP~Cr~~~~~  148 (158)
                      |....|.+|+.+|+..            ++-+||+||+.+..
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci  366 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI  366 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence            6678899999999863            24579999998754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=90.11  E-value=0.18  Score=44.97  Aligned_cols=24  Identities=33%  Similarity=0.909  Sum_probs=21.0

Q ss_pred             eCCCChhhHhhHHHHHhcCCCCCcc
Q 031539          117 LSCGHLFHKVCLEKWLDYLNVTCPL  141 (158)
Q Consensus       117 l~C~H~fh~~Ci~~w~~~~~~~CP~  141 (158)
                      ..|+|+.|.+|..+|++ ....||.
T Consensus      1046 g~C~Hv~H~sc~~eWf~-~gd~Cps 1069 (1081)
T KOG0309|consen 1046 GTCGHVGHTSCMMEWFR-TGDVCPS 1069 (1081)
T ss_pred             ccccccccHHHHHHHHh-cCCcCCC
Confidence            47999999999999998 4778885

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=88.67  E-value=0.45  Score=42.92  Aligned_cols=52  Identities=23%  Similarity=0.585  Sum_probs=37.1

Q ss_pred             CCCCcccccccccccCCCCeEEeCCC-----ChhhHhhHHHHHhc-CCCCCccccCcCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCG-----HLFHKVCLEKWLDY-LNVTCPLCRTPLI  147 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~-~~~~CP~Cr~~~~  147 (158)
                      .+++..|.||..+-..+ .+..=||+     ...|.+|+-+|+.- ....|-+|..++.
T Consensus         9 N~d~~~CRICr~e~~~d-~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~   66 (1175)
T COG5183           9 NEDKRSCRICRTEDIRD-DPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK   66 (1175)
T ss_pred             CccchhceeecCCCCCC-CcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence            56668999999875433 34344655     35699999999963 2345999988763

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=85.76  E-value=0.22  Score=44.00  Aligned_cols=52  Identities=27%  Similarity=0.660  Sum_probs=38.9

Q ss_pred             CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC--CCCCccccCcCCCCCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL--NVTCPLCRTPLIPEFED  152 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--~~~CP~Cr~~~~~~~~~  152 (158)
                      ..+|+||...+.   .+..+.|.|.|+..|+..-+...  ...||+|+..+......
T Consensus        21 ~lEc~ic~~~~~---~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~   74 (684)
T KOG4362|consen   21 ILECPICLEHVK---EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLR   74 (684)
T ss_pred             hccCCceeEEee---ccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhcc
Confidence            369999999984   44677899999999987665432  34699999877554433

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=84.13  E-value=0.34  Score=45.56  Aligned_cols=43  Identities=30%  Similarity=0.712  Sum_probs=35.8

Q ss_pred             CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCcccc
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR  143 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr  143 (158)
                      ...|.+|++.+.  ....+..|+|.++..|...|+. .+..||.|.
T Consensus      1153 ~~~c~ic~dil~--~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~k 1195 (1394)
T KOG0298|consen 1153 HFVCEICLDILR--NQGGIAGCGHEPCCRCDELWLY-ASSRCPICK 1195 (1394)
T ss_pred             ccchHHHHHHHH--hcCCeeeechhHhhhHHHHHHH-HhccCcchh
Confidence            358999999884  2344567999999999999998 689999996

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.21  E-value=0.69  Score=35.19  Aligned_cols=39  Identities=33%  Similarity=0.761  Sum_probs=27.2

Q ss_pred             cccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCC
Q 031539          101 CSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus       101 C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      |..|-+.-   ..+..+||.|. +|..|-..     ...||+|+....
T Consensus       161 Cr~C~~~~---~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGERE---ATVLLLPCRHLCLCGICDES-----LRICPICRSPKT  200 (207)
T ss_pred             ceecCcCC---ceEEeecccceEeccccccc-----CccCCCCcChhh
Confidence            88888654   56778899975 46667322     456999987543

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=83.03  E-value=0.94  Score=36.58  Aligned_cols=46  Identities=24%  Similarity=0.410  Sum_probs=36.3

Q ss_pred             cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC--CCCCccccC
Q 031539           99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL--NVTCPLCRT  144 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--~~~CP~Cr~  144 (158)
                      ..|||--+.-.++..+..+.|||+.-..-++.-.++.  ...||.|..
T Consensus       337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~  384 (396)
T COG5109         337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE  384 (396)
T ss_pred             eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence            5788877776667789999999999999999977642  245999943

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.07  E-value=0.8  Score=39.72  Aligned_cols=49  Identities=31%  Similarity=0.775  Sum_probs=38.6

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFE  151 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~  151 (158)
                      .+....|.+|....    ..+..+|.   |..|+.+|.. .+..||+|+..+..+..
T Consensus       476 ~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~-~~~~~pl~~~~~~~~~~  524 (543)
T KOG0802|consen  476 REPNDVCAICYQEM----SARITPCS---HALCLRKWLY-VQEVCPLCHTYMKEDDF  524 (543)
T ss_pred             hcccCcchHHHHHH----Hhcccccc---chhHHHhhhh-hccccCCCchhhhcccc
Confidence            45567899999886    45666787   8999999998 68999999887655443

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.48  E-value=0.75  Score=38.26  Aligned_cols=37  Identities=27%  Similarity=0.787  Sum_probs=27.0

Q ss_pred             CCccccccc-ccccCCCCeEEeCCCChhhHhhHHHHHh
Q 031539           97 AEHDCSVCL-TEFEPQSDINNLSCGHLFHKVCLEKWLD  133 (158)
Q Consensus        97 ~~~~C~iCl-~~~~~~~~~~~l~C~H~fh~~Ci~~w~~  133 (158)
                      ....|.||. +.......-....|+|.||..|+.+.+.
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie  182 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE  182 (384)
T ss_pred             ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence            457999999 4443323333557999999999998886

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=80.67  E-value=1.5  Score=39.22  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=27.2

Q ss_pred             ccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCCCCCcc
Q 031539          100 DCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPL  141 (158)
Q Consensus       100 ~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~  141 (158)
                      .|.+|-.... | .-...+ |+|..|..|+..|+. ++..||.
T Consensus       781 ~CtVC~~vi~-G-~~~~c~~C~H~gH~sh~~sw~~-~~s~ca~  820 (839)
T KOG0269|consen  781 KCTVCDLVIR-G-VDVWCQVCGHGGHDSHLKSWFF-KASPCAK  820 (839)
T ss_pred             Cceeecceee-e-eEeecccccccccHHHHHHHHh-cCCCCcc
Confidence            6777765542 1 111123 999999999999997 5777876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		8e-07
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		1e-06
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		1e-05
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		9e-05
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		9e-04

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
           C+VCL +F+P+ ++    C H FH+ CL KWL+   V CPLC  P++
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKV-CPLCNMPVL 63

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
           C++CL+  E   D+  L C HLFH+VC+++WL   N  CP+CR  +
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICRVDI 61

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 81  NQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCP 140
            Q P+ ++    H +  +  C VC+ +FE +  +  L C H FH  C++KWL   N TCP
Sbjct: 7   GQLPSYRFNPNNH-QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK-ANRTCP 64
Query: 141 LCRTPLIP 148
           +CR    P
Sbjct: 65  ICRADSGP 72

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 100 DCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
           +C+VCL E E   +   L  CGH FH  C++ WL   + TCPLCR  ++
Sbjct: 7   ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           +C VC  ++     +  L C HLFH  C+  WL+  + +CP+CR  L  +
Sbjct: 17  ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD-SCPVCRKSLTGQ 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	7e-16
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-15
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	2e-15
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	2e-15
2ect_A	78	Ring finger protein 126; metal binding protein, st	3e-14
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	2e-13
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	4e-12
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	3e-11
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	7e-11
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-10
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	5e-10
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	1e-09
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-09
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	4e-09
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	9e-09
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-08
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	3e-08
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	5e-08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	6e-08
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	8e-08
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-07
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	3e-07
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-07
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	5e-07
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	3e-06
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	7e-06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	7e-06
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	7e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	8e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	6e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	2e-05
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	2e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	3e-05
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	5e-05
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	8e-05
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	1e-04
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	2e-04
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	3e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	5e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	8e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 67.4 bits (165), Expect = 7e-16
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 84  PAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
           P+ ++    H  +    C VC+ +FE +  +  L C H FH  C++KWL   N TCP+CR
Sbjct: 10  PSYRFNPNNHQSEQT-LCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL-KANRTCPICR 67

Query: 144 TPLIP 148
               P
Sbjct: 68  ADSGP 72

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 66.2 bits (162), Expect = 2e-15
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 95  EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           ED E  C++CL+  E   D+  L C HLFH+VC+++WL   N  CP+CR  +  +
Sbjct: 11  EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICRVDIEAQ 64

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 66.3 bits (162), Expect = 2e-15
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 95  EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDP 154
            +    C+VCL +F+P+ ++    C H FH+ CL KWL+ +   CPLC  P++   +   
Sbjct: 12  LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE-VRKVCPLCNMPVLQLAQLSG 70

Query: 155 SC 156
             
Sbjct: 71  PS 72

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 66.6 bits (163), Expect = 2e-15
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 71  PPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEK 130
           PP S  +E  +  P I           E  C +C +E+        L C H FHK C+  
Sbjct: 15  PPAS--KESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSI 72

Query: 131 WLDYLNVTCPLCRTPLIP 148
           WL   + TCP+CR    P
Sbjct: 73  WLQ-KSGTCPVCRCMFPP 89

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 63.2 bits (154), Expect = 3e-14
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 95  EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
             +  +C VC  ++     +  L C HLFH  C+  WL+  + +CP+CR  L  +
Sbjct: 12  VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQ 65

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 60.3 bits (147), Expect = 2e-13
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 100 DCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
           +C+VCL E E   +   L  CGH FH  C++ WL   + TCPLCR  ++
Sbjct: 7   ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-GSHSTCPLCRLTVV 54

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 56.9 bits (138), Expect = 4e-12
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 96  DAEHDCSVCLTEFEP-QSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
                C +CL +    +   + L CGHL H+ C E+ L      CPLC  P 
Sbjct: 3   SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCSGPS 53

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 55.1 bits (133), Expect = 3e-11
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 96  DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
             E +C +C+           L C H F + C++KW D  +  CP+CR  +   
Sbjct: 13  TDEEECCICMDGRADLI----LPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 61

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 53.9 bits (130), Expect = 7e-11
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 96  DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
                C +CL +    S    L C H F  VC+ +W+   N TCPLC+ P+
Sbjct: 3   TVAERCPICLEDPSNYSMA--LPCLHAFCYVCITRWIR-QNPTCPLCKVPV 50

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 52.6 bits (126), Expect = 2e-10
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 100 DCSVCLTEFEPQSDINN----LSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
            C +C+  +              CGH+F   CL   L   N TCP CR  +
Sbjct: 17  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 66

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 55.9 bits (134), Expect = 5e-10
 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 87  KYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
           +YE           C +C        D+    CGHL    CL  W +     CP CR  +
Sbjct: 321 QYELYCEMGSTFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377

Query: 147 IPE 149
              
Sbjct: 378 KGT 380

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 101 CSVCLTEFEPQSDINN----LSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           C +C+  +              CGH+F   CL   L   N TCP CR  +  +
Sbjct: 6   CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHK 57

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 50.6 bits (121), Expect = 1e-09
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 101 CSVCLTEFE----PQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           C +C+  +         I +  CGH+F   CL   L   N TCP CR  +  +
Sbjct: 13  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHK 64

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 53.3 bits (127), Expect = 4e-09
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 15/67 (22%)

Query: 95  EDAEHDCSVCLTEF-----EPQSDINNLSCGHLFHKVCLEKWL----------DYLNVTC 139
           ++ E  C++C          P    +N  C    H VCLE+W           +     C
Sbjct: 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQC 364

Query: 140 PLCRTPL 146
           P C+  L
Sbjct: 365 PFCKAKL 371

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 49.1 bits (117), Expect = 9e-09
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 81  NQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCP 140
           + +  +  +++         C +C+ +           C  L    C+ +WL      CP
Sbjct: 6   HHHSHMDEQSV-ESIAEVFRCFICMEKLRDARLC--PHCSKLCCFSCIRRWLTEQRAQCP 62

Query: 141 LCRTPLIPE 149
            CR PL   
Sbjct: 63  HCRAPLQLR 71

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 48.0 bits (114), Expect = 2e-08
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 94  CEDAEHD-CSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           C     D C  C  E + +  +     C H FH  C+  W+   N  CPLC+   + +
Sbjct: 21  CRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVVQ 77

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 47.2 bits (112), Expect = 3e-08
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 95  EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWL-DYLNVTCPLCRTPLIPEFEDD 153
            DA   C++C +        +  +CG   H  C+ K+        CP C      E    
Sbjct: 12  PDAVKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKS 69

Query: 154 P 154
            
Sbjct: 70  G 70

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 48.0 bits (114), Expect = 5e-08
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 98  EHDCSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
           E  C +C+    EP +    L C H   K C +  ++  ++ CP CR  +
Sbjct: 15  ECQCGICMEILVEPVT----LPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 47.5 bits (112), Expect = 6e-08
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 19/67 (28%)

Query: 98  EHDCSVCLTEFEPQSDINN---------------LSCGHLFHKVCLEKWLDYLN----VT 138
           E DC +C+ +    S  ++                 C H FH +CL       N    + 
Sbjct: 25  EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQ 84

Query: 139 CPLCRTP 145
           CP C+T 
Sbjct: 85  CPSCKTI 91

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 46.0 bits (109), Expect = 8e-08
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 100 DCSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDP 154
           +C++CL     P S    L C H+F  +C++         C LCR  +  +F D  
Sbjct: 17  ECAICLQTCVHPVS----LPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDFLDSG 67

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 47.0 bits (111), Expect = 2e-07
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 98  EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
           E  C +C   F    +   L+C H F   C+ +W+    + CP+CR  +
Sbjct: 64  ELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDI 108

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 96  DAEHDCSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
                CS+C     +  +      C H F K C+ +   Y +  CP C   +
Sbjct: 13  TPYILCSICKGYLIDATT---ITECLHTFCKSCIVRHFYY-SNRCPKCNIVV 60

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 6/58 (10%)

Query: 95  EDAEHDCSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFE 151
           E+    C +C   F  P        C H F + C  +        C +C  P    F 
Sbjct: 12  EEIPFRCFICRQAFQNPVV----TKCRHYFCESCALEHFRA-TPRCYICDQPTGGIFN 64

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 44.4 bits (105), Expect = 3e-07
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 96  DAEHDCSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           + ++ C  C      P+       CGH F + C+   L   +  C  C+  ++ +
Sbjct: 13  EDKYKCEKCHLVLCSPKQ----TECGHRFCESCMAALLSSSSPKCTACQESIVKD 63

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 5/70 (7%)

Query: 80  RNQNPAIKYETLLHCEDAEHDCSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVT 138
                   ++  L   +    C  C      P +      C H   K CL++       +
Sbjct: 34  DRPASGSPFQLFLSKVEETFQCICCQELVFRPIT----TVCQHNVCKDCLDRSFRAQVFS 89

Query: 139 CPLCRTPLIP 148
           CP CR  L  
Sbjct: 90  CPACRYDLGR 99

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 44.9 bits (106), Expect = 5e-07
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 96  DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
                C +C        D    SC HLF ++C+ + L  +   CP CR P  P 
Sbjct: 21  VKSISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 5/49 (10%)

Query: 101 CSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148
           C  C     +P +      C H   K CL++       +CP CR  L  
Sbjct: 81  CVCCQELVYQPVT----TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 96  DAEHDCSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           +++++C +CL    E         CGH F K C+ K +      CP+    L+  
Sbjct: 16  ESKYECPICLMALREAVQ----TPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 41.7 bits (97), Expect = 7e-06
 Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 2/54 (3%)

Query: 93  HCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTP 145
           H  D   +C         +        C H FH  C+ +WL      CPL    
Sbjct: 46  HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNRE 98

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 41.2 bits (96), Expect = 7e-06
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 95  EDAEHDCSVCLTEFEP-QSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           ++   +C +C+   E    +    +CG+   + C  +     N  CP CR P   +
Sbjct: 8   KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 42.1 bits (98), Expect = 7e-06
 Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 2/54 (3%)

Query: 93  HCEDAEHDCSVCLTEFEPQSDINN-LSCGHLFHKVCLEKWLDYLNVTCPLCRTP 145
           H  D   +C         +        C H FH  C+ +WL      CPL    
Sbjct: 57  HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNRE 109

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 42.1 bits (98), Expect = 8e-06
 Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 5/66 (7%)

Query: 96  DAEHDCSVCLTEFEPQSDINN----LSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFE 151
                C +C+  +              CGH+F   CL   L   N TCP CR  +  +  
Sbjct: 5   SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRY 63

Query: 152 DDPSCF 157
                 
Sbjct: 64  HPIYIG 69

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 37.1 bits (85), Expect = 6e-04
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 93  HCEDAEHDCSVCLTEF----EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
           +       C +C+  +    +    I +  CGH+F   CL   L   N TCP CR  +
Sbjct: 67  YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 123

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 101 CSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
           C +C   F +  +    + C H F K C+ ++L+  +  CP+C   +
Sbjct: 18  CVLCGGYFIDATT---IIECLHSFCKTCIVRYLET-SKYCPICDVQV 60

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 95  EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL-NVTCPLCRTPL 146
            DA   C++C +            CG   H  C+ K+        CP C    
Sbjct: 177 PDAVKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 101 CSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           C +CL       +      C H F   C+   L   N  CP CR  L+ +
Sbjct: 57  CPICLDMLKNTMT---TKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 101 CSVCLTEFEPQSDI-NNLSCGHLFHKVCLEKWL--DYLNVTCPLCRTP 145
           C +C+  F  +      L CGH   + CLEK L      V CP C   
Sbjct: 18  CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKI 65

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 98  EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWL-------DYLNVTCPLCRTPLIPEF 150
              C +CL E+  +       C  +F  +CL++++           ++CP    P     
Sbjct: 5   SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHL 64

Query: 151 EDD 153
           +++
Sbjct: 65  QEN 67

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 96  DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           +++++C +CL       +     CGH F K C+ K +      CP+    L+  
Sbjct: 16  ESKYECPICL---MALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 101 CSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVT--CPLCRTPLIPE 149
           C +CL    EP S      C H+F K C+ K L+       CPLC+  +   
Sbjct: 24  CPICLELIKEPVS----TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 39.3 bits (91), Expect = 8e-05
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 96  DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           +A++ CS C              CGH +   CL   L      C  C    I E
Sbjct: 29  EAKYLCSACR---NVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 98  EHDCSVCLTE--FEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
           +  C  C T     P   +    CGH   + C++         CP C TPL
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 9/47 (19%)

Query: 101 CSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
           C  C  E   P+     L C H     CLE       + CP+C+ P 
Sbjct: 9   CQQCQAEAKCPKL----LPCLHTLCSGCLEA----SGMQCPICQAPW 47

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 7/46 (15%)

Query: 101 CSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTP 145
           CS C     EP        C H+F   C+   +      CP+C TP
Sbjct: 25  CSRCTNILREPVCLGG---CEHIFCSNCVSDCIGT---GCPVCYTP 64

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 96  DAEHDCSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
           D    C +C   F           C H +  +C+ K+L Y    CP C   +
Sbjct: 20  DDLLRCGICFEYFNIAMIIP---QCSHNYCSLCIRKFLSY-KTQCPTCCVTV 67

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 101 CSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVT--CPLCRTPLIPE 149
           C +CL    +P +    + CGH F   C+ +  +       CPLC+T +   
Sbjct: 23  CPICLDILQKPVT----IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.74
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.64
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.61
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.58
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.58
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.57
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.51
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.48
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.48
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.45
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.43
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.42
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.42
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.42
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.41
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.4
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.4
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.39
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.37
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.37
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.36
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.35
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.35
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.34
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.34
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.33
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.31
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.28
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.28
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.28
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.27
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.27
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.26
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.25
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.25
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.25
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.24
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.23
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.23
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.2
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.19
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.18
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.17
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.17
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.16
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.14
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.13
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.12
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.12
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.08
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.05
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.04
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.04
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.02
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.98
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.97
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.95
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.94
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.93
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.85
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.79
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.79
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.77
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.75
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.74
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.63
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.59
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.49
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.45
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.44
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.38
3nw0_A	238	Non-structural maintenance of chromosomes element	97.69
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.07
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	93.61
1we9_A	64	PHD finger family protein; structural genomics, PH	93.0
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	87.58
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	87.35
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	86.9
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	86.33
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	84.71
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	84.23
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	83.41
1wem_A	76	Death associated transcription factor 1; structura	81.88
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	81.01
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	80.41

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.74  E-value=4.1e-18  Score=112.38  Aligned_cols=79  Identities=28%  Similarity=0.526  Sum_probs=68.2

Q ss_pred             CCCcchHHHHHhhCCcceeeccccCCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           70 SPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        70 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ....+++++.++.+|...+.......+.+..|+||++.+..++.++.++|+|.||..||.+|++ .+.+||+||+.+.+.
T Consensus        12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~~   90 (91)
T 2l0b_A           12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPPP   90 (91)
T ss_dssp             SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSCC
T ss_pred             cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCCCC
Confidence            3456788899999999998876555667789999999998888899999999999999999998 588999999988653

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=9e-17  Score=102.00  Aligned_cols=68  Identities=34%  Similarity=0.769  Sum_probs=55.6

Q ss_pred             hhCCcceeeccccCCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539           81 NQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF  150 (158)
Q Consensus        81 ~~lp~~~~~~~~~~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~  150 (158)
                      +++|..+++... ...++..|+||++.+..++.++.++|+|.||..||.+|++ .+.+||+||+.+.+..
T Consensus         7 ~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~~   74 (75)
T 1x4j_A            7 GQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK-ANRTCPICRADSGPSS   74 (75)
T ss_dssp             SSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHH-HCSSCTTTCCCCCCCC
T ss_pred             hhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHH-cCCcCcCcCCcCCCCC
Confidence            456777665432 2456679999999998888889999999999999999998 4789999999987653

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.61  E-value=8.7e-16  Score=95.77  Aligned_cols=58  Identities=40%  Similarity=0.998  Sum_probs=50.3

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDD  153 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~  153 (158)
                      ...+..|+||++.+..++.++.++|+|.||..|+.+|++ .+.+||+||+.+......+
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~   68 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-TNKKCPICRVDIEAQLPSE   68 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHH-HCSBCTTTCSBSCSCCCCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHH-cCCCCcCcCccccCcCCCC
Confidence            455679999999998778889999999999999999998 4788999999998766544

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=2.2e-15  Score=95.17  Aligned_cols=57  Identities=35%  Similarity=0.902  Sum_probs=48.9

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFED  152 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~  152 (158)
                      ...+..|+||++.+.++...+.++|+|.||..||.+|++ .+.+||+||+.+......
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~   68 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE-VRKVCPLCNMPVLQLAQL   68 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH-HCSBCTTTCCBCSSCCSC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH-cCCcCCCcCccccccccc
Confidence            345679999999998888888889999999999999998 477999999998765443

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.58  E-value=8.8e-16  Score=91.56  Aligned_cols=51  Identities=43%  Similarity=1.009  Sum_probs=45.7

Q ss_pred             CCCcccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      +++.+|+||++.+.+++.+..++ |+|.||..|+.+|++ .+.+||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence            45679999999998888888897 999999999999998 5889999999874

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.57  E-value=2.1e-15  Score=96.24  Aligned_cols=58  Identities=29%  Similarity=0.807  Sum_probs=49.6

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDD  153 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~  153 (158)
                      ...+..|+||++.|..+..++.++|+|.||..||.+|++ .+.+||+||+.+.......
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~   69 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQNTAT   69 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCCSCSCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCCcccCC
Confidence            345679999999998777788899999999999999998 5789999999987664443

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.51  E-value=1.6e-14  Score=98.40  Aligned_cols=59  Identities=27%  Similarity=0.520  Sum_probs=46.1

Q ss_pred             CCcccccccccccCCC---------------CeEEeCCCChhhHhhHHHHHhc----CCCCCccccCcCCCCCCCCCC
Q 031539           97 AEHDCSVCLTEFEPQS---------------DINNLSCGHLFHKVCLEKWLDY----LNVTCPLCRTPLIPEFEDDPS  155 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~---------------~~~~l~C~H~fh~~Ci~~w~~~----~~~~CP~Cr~~~~~~~~~~~~  155 (158)
                      .+..|+||++.|.++.               ..+.++|+|.||..||.+|+..    .+.+||+||+.+.....+++.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~  101 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW  101 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence            4569999999996543               3346789999999999999942    467899999998776655543

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.48  E-value=1.9e-14  Score=85.56  Aligned_cols=51  Identities=33%  Similarity=0.827  Sum_probs=43.1

Q ss_pred             CCCcccccccccccCC-CCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539           96 DAEHDCSVCLTEFEPQ-SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      .++..|+||++.+.++ +.++.++|+|.||..|+.+|++. +.+||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~   54 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS   54 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred             CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence            4567999999999544 34777899999999999999984 689999999774

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2e-14  Score=92.63  Aligned_cols=51  Identities=25%  Similarity=0.740  Sum_probs=40.5

Q ss_pred             CCcccccccccccC-----------CCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           97 AEHDCSVCLTEFEP-----------QSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        97 ~~~~C~iCl~~~~~-----------~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      +++.|+||++.|.+           ++.++.++ |+|.||..||++|++ .+.+||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence            45678888887743           34466665 999999999999998 57899999998754

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=7.1e-14  Score=89.90  Aligned_cols=59  Identities=25%  Similarity=0.610  Sum_probs=46.6

Q ss_pred             cCCCCCcccccccccccCCCCeEEeCCC-----ChhhHhhHHHHHhcC-CCCCccccCcCCCCCCC
Q 031539           93 HCEDAEHDCSVCLTEFEPQSDINNLSCG-----HLFHKVCLEKWLDYL-NVTCPLCRTPLIPEFED  152 (158)
Q Consensus        93 ~~~~~~~~C~iCl~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~-~~~CP~Cr~~~~~~~~~  152 (158)
                      ....++..|.||++++++++.. .+||+     |.||..||++|+... +.+||+||+.+..+...
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~   74 (80)
T 2d8s_A           10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL   74 (80)
T ss_dssp             CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred             CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence            3356678999999999766554 68996     999999999999752 25899999998765443

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.43  E-value=4.4e-14  Score=88.23  Aligned_cols=55  Identities=27%  Similarity=0.629  Sum_probs=45.4

Q ss_pred             CCCCcccccccccccC----CCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539           95 EDAEHDCSVCLTEFEP----QSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF  150 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~----~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~  150 (158)
                      .+++..|+||++.+.+    +..++.++|+|.||..|+.+|++ .+.+||+||+.+....
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~   65 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKR   65 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCCCS
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH-cCCCCCCCCCccChhh
Confidence            4566899999999853    23457889999999999999998 4789999999987543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.7e-13  Score=86.05  Aligned_cols=55  Identities=22%  Similarity=0.432  Sum_probs=45.7

Q ss_pred             CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCCCCCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDP  154 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~  154 (158)
                      .++..|+||++.+   ..+..+ +|+|.||..||.+|++ .+..||+||+.+.......+
T Consensus        13 ~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A           13 TPYILCSICKGYL---IDATTITECLHTFCKSCIVRHFY-YSNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CGGGSCTTTSSCC---SSCEECSSSCCEECHHHHHHHHH-HCSSCTTTCCCCCSSCSCCC
T ss_pred             CCCCCCCCCChHH---HCcCEECCCCCHHHHHHHHHHHH-cCCcCCCcCcccCccccccc
Confidence            4567999999999   446666 8999999999999998 48899999999977655443

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=6.3e-14  Score=86.91  Aligned_cols=53  Identities=28%  Similarity=0.660  Sum_probs=43.8

Q ss_pred             CCCCcccccccccccCC----CCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           95 EDAEHDCSVCLTEFEPQ----SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~----~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ..++..|+||++.+.+.    ..+..++|+|.||..||.+|++ .+.+||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH-HCSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH-cCCCCCCCCCccCc
Confidence            34567999999999532    3347789999999999999998 48899999998764

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.42  E-value=6.9e-14  Score=85.48  Aligned_cols=52  Identities=31%  Similarity=0.680  Sum_probs=43.5

Q ss_pred             CCcccccccccccCC----CCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           97 AEHDCSVCLTEFEPQ----SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~----~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ++..|+||++.+.+.    ..+..++|+|.||..|+.+|++ .+.+||+||+.+...
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHK   57 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH-HCSBCTTTCCBCTTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH-cCCCCCCCCccCCcc
Confidence            457999999999532    3457889999999999999998 488999999988764

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.41  E-value=1.7e-13  Score=92.57  Aligned_cols=52  Identities=23%  Similarity=0.578  Sum_probs=42.9

Q ss_pred             CCCCcccccccccccCCC---------------CeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539           95 EDAEHDCSVCLTEFEPQS---------------DINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~---------------~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      ..+++.|+||++.|.+..               .++.++|+|.||..||++|+. .+.+||+||+.+.
T Consensus        34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE  100 (106)
T ss_dssp             SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred             CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence            345689999999996431               256679999999999999998 5899999999853

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=4.9e-14  Score=88.34  Aligned_cols=51  Identities=25%  Similarity=0.584  Sum_probs=44.2

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ..++..|+||++.+   ..++.++|+|.||..|+.+|+. .+.+||+||+.+...
T Consensus        12 ~~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           12 SLTVPECAICLQTC---VHPVSLPCKHVFCYLCVKGASW-LGKRCALCRQEIPED   62 (71)
T ss_dssp             SSSCCBCSSSSSBC---SSEEEETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCHH
T ss_pred             CCCCCCCccCCccc---CCCEEccCCCHHHHHHHHHHHH-CCCcCcCcCchhCHh
Confidence            34567999999998   5678889999999999999998 578999999988653

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.1e-13  Score=84.15  Aligned_cols=52  Identities=19%  Similarity=0.572  Sum_probs=43.3

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ..++..|+||++.+   ..+..++|+|.||..|+.+|++.....||+||+.+..+
T Consensus        12 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           12 VEDKYKCEKCHLVL---CSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCCEECTTTCCEE---SSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CCcCCCCCCCChHh---cCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            34567999999999   45566899999999999999964567899999988654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.39  E-value=1.6e-13  Score=85.07  Aligned_cols=50  Identities=34%  Similarity=0.851  Sum_probs=42.5

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      +.+..|+||++.+.  +..+.++|+|.||..|+.+|++ .+.+||+||+.+..
T Consensus         3 ~~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            3 TVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCC
T ss_pred             CCCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHh
Confidence            45679999999984  3357889999999999999998 47899999998864

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=4.7e-13  Score=84.00  Aligned_cols=52  Identities=27%  Similarity=0.586  Sum_probs=43.8

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc--CCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY--LNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~~CP~Cr~~~~~~  149 (158)
                      ..++..|+||++.+   ..+..++|+|.||..|+.+|++.  ....||+||+.+..+
T Consensus        17 ~~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           17 LQEEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCCBCTTTCSBC---SSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             CccCCEeccCCccc---CCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            34567999999999   57788899999999999999962  356899999988664

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=7.5e-13  Score=85.84  Aligned_cols=55  Identities=29%  Similarity=0.610  Sum_probs=45.1

Q ss_pred             CCCCcccccccccccCCCC-eEEeCCCChhhHhhHHHHHhcC--CCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSD-INNLSCGHLFHKVCLEKWLDYL--NVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~-~~~l~C~H~fh~~Ci~~w~~~~--~~~CP~Cr~~~~~~  149 (158)
                      ..++..|+||++.+.+++. ++.++|+|.||..|+.+|++..  ...||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            3456799999999965443 8888999999999999999853  37899999987554

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.7e-13  Score=85.45  Aligned_cols=51  Identities=31%  Similarity=0.797  Sum_probs=43.7

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF  150 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~  150 (158)
                      ..++..|+||++.+.   . +.++|+|.||..|+.+|+. .+.+||+||+.+....
T Consensus        12 ~~~~~~C~IC~~~~~---~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           12 LTDEEECCICMDGRA---D-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCSSSCCSCC---S-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred             CCCCCCCeeCCcCcc---C-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence            345679999999984   3 7889999999999999998 6899999999887543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=5.9e-13  Score=85.40  Aligned_cols=49  Identities=22%  Similarity=0.548  Sum_probs=42.9

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      ......|+||++.+   ..+..++|+|.||..|+.+|++ ...+||+||+.+.
T Consensus        12 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~   60 (81)
T 2csy_A           12 EEIPFRCFICRQAF---QNPVVTKCRHYFCESCALEHFR-ATPRCYICDQPTG   60 (81)
T ss_dssp             CCCCSBCSSSCSBC---CSEEECTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred             CCCCCCCcCCCchh---cCeeEccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence            34457999999999   5677899999999999999998 4889999999885

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.35  E-value=8.2e-13  Score=84.02  Aligned_cols=52  Identities=25%  Similarity=0.481  Sum_probs=44.9

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ..++..|+||++.|   ..++.++|||.||..||.+|+...+.+||+||+.+...
T Consensus         5 ~~~~~~C~IC~~~~---~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            5 FPEYFRCPISLELM---KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             CSSSSSCTTTSCCC---SSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CcccCCCCCccccc---cCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            35568999999999   67888999999999999999984478899999988654

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.34  E-value=3.5e-13  Score=94.98  Aligned_cols=48  Identities=29%  Similarity=0.879  Sum_probs=42.4

Q ss_pred             CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ++..|+||++.+   ..++.++|||.||..||..|+. .+.+||+||+.+..
T Consensus        52 ~~~~C~iC~~~~---~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           52 NELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKS   99 (138)
T ss_dssp             HHSBCTTTCSBC---SSEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC
T ss_pred             ccCCCcccCccc---CCceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC
Confidence            346899999999   5788899999999999999998 58899999998854

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.34  E-value=6.9e-13  Score=83.78  Aligned_cols=50  Identities=24%  Similarity=0.518  Sum_probs=42.0

Q ss_pred             CCCcccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcC-CCCCccccCcCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYL-NVTCPLCRTPLIP  148 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~-~~~CP~Cr~~~~~  148 (158)
                      .++..|+||++.+   ..++.++ |+|.||..||.+|++.. ..+||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           13 PDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             CGGGSCSSSCCCC---TTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             CCCCCCcCCChHH---hCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            4567999999999   5678899 99999999999999742 2689999998654

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.33  E-value=4.5e-13  Score=89.48  Aligned_cols=50  Identities=28%  Similarity=0.722  Sum_probs=42.9

Q ss_pred             CCCcccccccccccCCCCeEE-eCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINN-LSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~-l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      .++..|+||++.+   ..++. ++|+|.||..||.+|+...+.+||+||+.+..
T Consensus        20 ~~~~~C~IC~~~~---~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           20 AEVFRCFICMEKL---RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHHTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCccCCccc---cCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            3457999999999   56777 89999999999999998544799999999854

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.31  E-value=1.6e-12  Score=79.96  Aligned_cols=53  Identities=26%  Similarity=0.527  Sum_probs=42.0

Q ss_pred             CCcccccccc-cccCCCCe-EEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           97 AEHDCSVCLT-EFEPQSDI-NNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        97 ~~~~C~iCl~-~~~~~~~~-~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ++..|+||++ .+.+.... ..++|||.||..|+.+|+......||+||+.+..+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence            3568999999 77544332 45799999999999999875567899999988654

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2.8e-12  Score=82.35  Aligned_cols=53  Identities=32%  Similarity=0.688  Sum_probs=43.9

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc-----CCCCCccccCcCCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY-----LNVTCPLCRTPLIPEF  150 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-----~~~~CP~Cr~~~~~~~  150 (158)
                      ..++..|+||++.+   ..+..++|+|.||..|+..|+..     ....||+||..+....
T Consensus        16 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           16 VKEEVTCPICLELL---TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCCCTTTCSCC---SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             ccCCCCCCCCCccc---CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            34567999999999   45677899999999999999974     2678999999987643

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.28  E-value=2.6e-12  Score=88.81  Aligned_cols=50  Identities=24%  Similarity=0.451  Sum_probs=43.3

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      .++..|+||++.+   ..++.++|||.||..||..|+......||+||..+..
T Consensus        50 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           50 EETFQCICCQELV---FRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             ccCCCCCcCChHH---cCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            3457899999999   5788899999999999999998545589999999866

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.28  E-value=3.1e-12  Score=82.16  Aligned_cols=51  Identities=25%  Similarity=0.628  Sum_probs=43.3

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC-----CCCCccccCcCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL-----NVTCPLCRTPLIPE  149 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----~~~CP~Cr~~~~~~  149 (158)
                      .++..|+||++.+   ..+..++|+|.||..|+..|+...     ...||+||..+...
T Consensus        17 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           17 KEEVTCPICLELL---KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CTTTSCTTTCSCC---SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             ccCCCCcCCChhh---CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            4567999999999   566789999999999999999842     66899999998754

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=3.4e-12  Score=77.89  Aligned_cols=45  Identities=29%  Similarity=0.637  Sum_probs=38.3

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc--CCCCCccc
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY--LNVTCPLC  142 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~~CP~C  142 (158)
                      ..++..|+||++.+   .+++.++|+|.||..||.+|++.  .+..||+|
T Consensus        17 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBC---SSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchh---CCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            35567999999999   56788899999999999999974  35689998

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.27  E-value=7.1e-13  Score=84.32  Aligned_cols=52  Identities=25%  Similarity=0.597  Sum_probs=43.4

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC------CCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL------NVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~------~~~CP~Cr~~~~~~  149 (158)
                      ..++..|+||++.+   ..++.++|+|.||..|+.+|++..      ...||+||..+...
T Consensus         9 ~~~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A            9 VQEEVTCPICLELL---TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCCCEETTTTEEC---SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             cccCCCCcCCCccc---CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            35568999999999   456778999999999999999742      56899999998654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.26  E-value=6.1e-13  Score=91.31  Aligned_cols=52  Identities=23%  Similarity=0.579  Sum_probs=2.0

Q ss_pred             CCCCcccccccccccCC-------------C--CeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539           95 EDAEHDCSVCLTEFEPQ-------------S--DINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~-------------~--~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      ...++.|+||++.|++.             +  .+..++|+|.||..||++|++ .+.+||+||+.+.
T Consensus        45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE  111 (117)
T ss_dssp             CCCC----------------------------------------------------------------
T ss_pred             cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeee
Confidence            34568999999999642             2  122348999999999999998 5889999999854

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.25  E-value=5.6e-12  Score=82.54  Aligned_cols=50  Identities=24%  Similarity=0.497  Sum_probs=42.3

Q ss_pred             CCCCcccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcC-CCCCccccCcCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYL-NVTCPLCRTPLI  147 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~-~~~CP~Cr~~~~  147 (158)
                      ..++..|+||++.|   ..++.++ |+|.||..||.+|+... ...||+||..+.
T Consensus        10 ~~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           10 IPDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCTTTEETTTTEEC---SSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CCcCCCCCCCChhh---cCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            34568999999999   5778899 99999999999999642 368999999873

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.25  E-value=3e-12  Score=85.09  Aligned_cols=48  Identities=23%  Similarity=0.674  Sum_probs=41.8

Q ss_pred             CCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ++..|+||++.+   ..++.+ +|||.||..|+.+|+. .+.+||+||..+..
T Consensus        21 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYF---NIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhh---CCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence            346999999999   457777 8999999999999998 57899999998865

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.25  E-value=4.9e-12  Score=85.34  Aligned_cols=50  Identities=26%  Similarity=0.669  Sum_probs=43.4

Q ss_pred             CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      .++..|+||++.+   ..+..+ +|||.||..||..|+. .+.+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           13 NPHLMCVLCGGYF---IDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGGTBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHT-SCSBCTTTCCBSCSS
T ss_pred             CCcCCCccCChHH---hCcCEeCCCCChhhHHHHHHHHH-hCCcCcCCCcccccc
Confidence            4567999999999   567777 9999999999999998 578999999988754

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=5.1e-12  Score=79.86  Aligned_cols=57  Identities=25%  Similarity=0.512  Sum_probs=44.7

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCC--CCCccccCcCCCCCCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLN--VTCPLCRTPLIPEFEDDP  154 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~--~~CP~Cr~~~~~~~~~~~  154 (158)
                      .+....|+||.+.+..+...  ..|+|.||..||.+|++. +  .+||+||+....+.++.+
T Consensus        12 ~~~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~-~~~~~CP~Cr~~w~~~~~~~~   70 (74)
T 2ct0_A           12 PDAVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQS-NAEPRCPHCNDYWPHEIPKSG   70 (74)
T ss_dssp             SSSSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTT-CSSCCCTTTCSCCCSCCCCCC
T ss_pred             cCCCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHh-cCCCCCCCCcCcCCCCCCCCC
Confidence            34457999999999755333  279999999999999984 4  789999999876655543

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.23  E-value=3.7e-12  Score=88.25  Aligned_cols=54  Identities=28%  Similarity=0.653  Sum_probs=44.5

Q ss_pred             CCCCcccccccccccCC----CCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQ----SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~----~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ..++..|+||++.+.+.    ..++.++|||.||..||.+|++ .+.+||+||+.+...
T Consensus         4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHK   61 (133)
T ss_dssp             -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTTT
T ss_pred             CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-hCCCCCCCCCcCccc
Confidence            34567999999999532    3448889999999999999998 578999999988654

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=4.7e-12  Score=75.79  Aligned_cols=45  Identities=36%  Similarity=0.922  Sum_probs=37.3

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc--CCCCCccc
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY--LNVTCPLC  142 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~~CP~C  142 (158)
                      ..++..|+||++.+   ..++.++|+|.||..||.+|++.  .+.+||+|
T Consensus        12 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYL---KEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBC---SSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cccCCCCccCCccc---CccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            34567999999999   45677899999999999999653  46789998

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.20  E-value=8.3e-12  Score=89.24  Aligned_cols=50  Identities=24%  Similarity=0.431  Sum_probs=43.5

Q ss_pred             CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ++..|+||++.+   ..++.++|+|.||..||..|+......||+||..+...
T Consensus        77 ~~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELV---YQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhh---cCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            457999999999   57788999999999999999985445899999998765

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.19  E-value=1.2e-11  Score=84.85  Aligned_cols=52  Identities=25%  Similarity=0.614  Sum_probs=44.3

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ..++..|+||++.+   ..++.++|+|.||..||.+|+.....+||+||..+...
T Consensus        15 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           15 LESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCcCChhh---cCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            45668999999999   56788899999999999999985445999999988653

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.18  E-value=9.7e-12  Score=89.91  Aligned_cols=49  Identities=31%  Similarity=0.619  Sum_probs=41.7

Q ss_pred             CCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ++..|+||++.+   ..++.+ +|+|.||..||..|+...+..||+||..+..
T Consensus        53 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDML---KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCcccChHh---hCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            446999999999   456666 8999999999999998447889999998853

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.17  E-value=1.1e-11  Score=83.72  Aligned_cols=51  Identities=27%  Similarity=0.692  Sum_probs=41.9

Q ss_pred             CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCC--CCCccccCcCCCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLN--VTCPLCRTPLIPEF  150 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~--~~CP~Cr~~~~~~~  150 (158)
                      +...|+||++.+   ..+..++|+|.||..|+..|+....  ..||+||..+....
T Consensus        20 ~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (112)
T 1jm7_A           20 KILECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (112)
T ss_dssp             HHTSCSSSCCCC---SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             CCCCCcccChhh---cCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence            346999999999   4566789999999999999998422  48999999887643

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.17  E-value=2.4e-12  Score=87.78  Aligned_cols=49  Identities=24%  Similarity=0.685  Sum_probs=42.6

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      .++..|+||++.+   ..++.++|+|.||..||.+|+...+..||+||..+.
T Consensus        13 ~~~~~C~iC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           13 LSECQCGICMEIL---VEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHHHBCTTTCSBC---SSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCCCccCCccc---CceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            3457999999999   577888999999999999999744678999999875

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.16  E-value=1.3e-11  Score=84.16  Aligned_cols=49  Identities=33%  Similarity=0.806  Sum_probs=43.0

Q ss_pred             CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      +..|+||++.+   ..+..++|||.||..||.+|+...+.+||+||..+...
T Consensus        23 ~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (116)
T 1rmd_A           23 SISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (116)
T ss_dssp             HTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCcHh---cCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence            46999999999   56778999999999999999985477899999998654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.14  E-value=1.5e-11  Score=87.07  Aligned_cols=51  Identities=25%  Similarity=0.434  Sum_probs=43.5

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ..++..|+||++.+   ..++.++|||.||..||.+|++....+||+||..+..
T Consensus        28 l~~~~~C~IC~~~~---~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           28 LEAKYLCSACRNVL---RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             CCcCcCCCCCChhh---cCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            46678999999999   5678899999999999999998545689999997643

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.13  E-value=1.1e-11  Score=85.75  Aligned_cols=54  Identities=28%  Similarity=0.659  Sum_probs=44.6

Q ss_pred             CCCCcccccccccccC----CCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEP----QSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~----~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      .+++..|+||++.+.+    +...+.++|+|.||..|+++|++ .+.+||+||+.+..+
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHK  126 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-HCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH-cCCCCCCCCCcCChh
Confidence            3556799999999853    23347889999999999999998 488999999998654

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.12  E-value=4.6e-11  Score=76.27  Aligned_cols=54  Identities=28%  Similarity=0.671  Sum_probs=42.1

Q ss_pred             CCCCcccccccccccCCCCeEEeC--CCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLS--CGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~--C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      .+++..|+||++.+... .+..+|  |||.||..|+..++......||.||+.+...
T Consensus         8 ~~~~~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCCCBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred             cccCCcCCccCccCccc-cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence            35667999999998532 233444  9999999999999864567899999988654

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.12  E-value=3.7e-11  Score=97.45  Aligned_cols=52  Identities=27%  Similarity=0.674  Sum_probs=44.3

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ......|+||++.+   ..++.+||+|.||..|+..|+...+.+||+||+.+...
T Consensus       329 ~~~~~~C~ICle~~---~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          329 GSTFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             TTSSSBCTTTSSSB---CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             cCCCCCCCccCcCC---CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            34457999999998   67888999999999999999974578999999988653

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.08  E-value=2.4e-11  Score=72.68  Aligned_cols=49  Identities=29%  Similarity=0.493  Sum_probs=40.5

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF  150 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~  150 (158)
                      ..++..|+||++.+   ..++.++|+|.||..|+..|    ...||+||+.+....
T Consensus         3 e~~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            3 EFQFLRCQQCQAEA---KCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA   51 (56)
T ss_dssp             SCCCSSCSSSCSSC---BCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCS
T ss_pred             cccCCCceEeCCcc---CCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecCC
Confidence            35567999999999   46788999999999998873    568999999886543

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.05  E-value=1e-10  Score=75.83  Aligned_cols=49  Identities=20%  Similarity=0.171  Sum_probs=43.8

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      .++..|+||++.|   ..++.++|||.|++.||.+|+. .+.+||+||..+..
T Consensus        12 p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           12 PDEFRDPLMDTLM---TDPVRLPSGTVMDRSIILRHLL-NSPTDPFNRQMLTE   60 (85)
T ss_dssp             CTTTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCG
T ss_pred             chheECcccCchh---cCCeECCCCCEECHHHHHHHHh-cCCCCCCCcCCCCh
Confidence            3467999999999   6889999999999999999998 47899999998764

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.04  E-value=9.2e-11  Score=72.02  Aligned_cols=48  Identities=29%  Similarity=0.576  Sum_probs=40.6

Q ss_pred             CCCcccccccccccCCCCeEEe--CCCCh-hhHhhHHHHHhcCCCCCccccCcCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNL--SCGHL-FHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l--~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      .++..|.||++..   .....+  ||||. |+..|+.+|.+ .+..||+||+.+.
T Consensus         6 ~~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRP---KNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSC---SCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCC---CCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchh
Confidence            4567999999987   455655  99999 89999999998 5789999999875

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.04  E-value=1.4e-10  Score=77.47  Aligned_cols=50  Identities=20%  Similarity=0.192  Sum_probs=44.5

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      .++..|+||++.|   ..++.++|||.|++.||.+|+. .+.+||+||.++...
T Consensus        27 p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           27 PDEFRDPLMDTLM---TDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTES   76 (100)
T ss_dssp             STTTBCTTTCSBC---SSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTT
T ss_pred             cHhhCCcCccCcc---cCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChh
Confidence            4567999999999   7889999999999999999998 588999999988653

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.02  E-value=2.7e-10  Score=75.73  Aligned_cols=50  Identities=20%  Similarity=0.159  Sum_probs=44.2

Q ss_pred             CCCcccccccccccCCCCeEEeCCC-ChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCG-HLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~-H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      .++..|+||++.|   ..++.++|| |.|++.||.+|+. .+.+||+||..+...
T Consensus        20 p~~~~CpI~~~~m---~dPV~~~cG~htf~r~cI~~~l~-~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           20 CDEFLDPIMSTLM---CDPVVLPSSRVTVDRSTIARHLL-SDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHTT-TSCBCTTTCSBCCTT
T ss_pred             cHhcCCcCccccc---cCCeECCCCCeEECHHHHHHHHH-hCCCCCCCCCCCChh
Confidence            3457999999999   788999999 9999999999998 478999999988653

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.98  E-value=2.3e-10  Score=70.03  Aligned_cols=49  Identities=24%  Similarity=0.518  Sum_probs=40.4

Q ss_pred             CCCcccccccccccCCCCeEEe--CCCCh-hhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNL--SCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l--~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      +.+..|.||++..   .....+  ||||. |+..|+.+|.+ .+..||+||+.+..
T Consensus         5 ~~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~   56 (63)
T 2vje_B            5 NLLKPCSLCEKRP---RDGNIIHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQL   56 (63)
T ss_dssp             GGGSBCTTTSSSB---SCEEEEETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred             CcCCCCcccCCcC---CCeEEEecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence            4457999999987   445555  99998 99999999997 57899999998753

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.97  E-value=8.9e-11  Score=80.26  Aligned_cols=46  Identities=28%  Similarity=0.650  Sum_probs=40.2

Q ss_pred             CCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ++..|+||++.+   ..++.+ +|||.||..||..|+.   ..||+||..+..
T Consensus        21 ~~~~C~IC~~~~---~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~   67 (117)
T 1jm7_B           21 KLLRCSRCTNIL---REPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI   67 (117)
T ss_dssp             HTTSCSSSCSCC---SSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred             hCCCCCCCChHh---hCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence            457999999999   567777 8999999999999985   789999998854

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.95  E-value=3.4e-10  Score=82.07  Aligned_cols=52  Identities=25%  Similarity=0.614  Sum_probs=44.6

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ..++..|+||++.+   ..++.++|||.||..|+.+|+.....+||+||..+...
T Consensus        15 ~~~~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           15 LESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCChhh---cCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            45678999999999   56788999999999999999975456999999988653

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.94  E-value=1.9e-10  Score=72.52  Aligned_cols=44  Identities=34%  Similarity=0.685  Sum_probs=38.3

Q ss_pred             CCcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ++..|+||++.+   ..+..+||+|. ||..|+..|     ..||+||+.+..
T Consensus        23 ~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRN---IAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSB---CCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCC---CCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            346999999998   67888999999 999999987     679999998754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.93  E-value=5.8e-10  Score=86.07  Aligned_cols=50  Identities=14%  Similarity=0.176  Sum_probs=43.7

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      .....|+||++.|   ..++.++|||+||+.||.+|+...+.+||+||.++..
T Consensus       206 ~~~~~c~i~~~~~---~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          206 PDYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CSTTBCTTTCSBC---SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CcccCCcCcCCHh---cCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            4567999999999   7889999999999999999998545569999998864

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=2e-09  Score=70.82  Aligned_cols=48  Identities=17%  Similarity=0.486  Sum_probs=40.3

Q ss_pred             CCCCcccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcC-----CCCCcc--ccCc
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYL-----NVTCPL--CRTP  145 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~-----~~~CP~--Cr~~  145 (158)
                      ...+..|+||++.|   ..++.++ |||.|++.||.+|+...     ..+||+  |+..
T Consensus         4 ~~~~~~CPI~~~~~---~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            4 GSSGFTCPITKEEM---KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             CSSCCBCTTTCSBC---SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CCcEeECcCcCchh---cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            34567999999999   6788896 99999999999999742     358999  9865

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.79  E-value=3.1e-09  Score=77.85  Aligned_cols=51  Identities=14%  Similarity=0.146  Sum_probs=43.9

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ......|+||++.|   ..++.++|||+|++.||..|+...+.+||+||.++..
T Consensus       103 ip~~f~CPI~~elm---~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          103 IPDYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CcHhhcccCccccC---CCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            34568999999999   6789999999999999999997534579999998864

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.79  E-value=6.8e-10  Score=88.35  Aligned_cols=54  Identities=30%  Similarity=0.624  Sum_probs=41.2

Q ss_pred             CCCcccccccccccC-CCCeE----EeCCCChhhHhhHHHHHhcCC----------CCCccccCcCCCC
Q 031539           96 DAEHDCSVCLTEFEP-QSDIN----NLSCGHLFHKVCLEKWLDYLN----------VTCPLCRTPLIPE  149 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~-~~~~~----~l~C~H~fh~~Ci~~w~~~~~----------~~CP~Cr~~~~~~  149 (158)
                      +...+|+||++.+.+ ++.+.    ..+|+|.||..|+.+|++...          .+||+||+++..+
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence            456799999999976 43332    246999999999999997411          3699999988654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.77  E-value=5.8e-09  Score=63.13  Aligned_cols=50  Identities=26%  Similarity=0.632  Sum_probs=38.2

Q ss_pred             CCCCcccccccccccCCCCeEEeCCC--C---hhhHhhHHHHHhc-CCCCCccccCcCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCG--H---LFHKVCLEKWLDY-LNVTCPLCRTPLI  147 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~--H---~fh~~Ci~~w~~~-~~~~CP~Cr~~~~  147 (158)
                      .++...|.||++..  ++ ...+||.  +   .||..|+.+|+.. .+.+||+|+..+.
T Consensus         3 ~~~~~~CrIC~~~~--~~-~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            3 DEDVPVCWICNEEL--GN-ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEEC--SC-CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCEeEEeecCC--CC-ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            34567999999874  22 3457855  4   9999999999974 3578999998775

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=2e-09  Score=67.90  Aligned_cols=44  Identities=34%  Similarity=0.697  Sum_probs=37.1

Q ss_pred             CcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      +..|+||++.+   ..+..+||+|. ||..|+..     ...||+||..+...
T Consensus        25 ~~~C~IC~~~~---~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           25 EKLCKICMDRN---IAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK   69 (75)
T ss_dssp             HHSCSSSCSSC---CCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred             CCCCCcCCCCC---CCEEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence            46899999998   56778899999 99999954     47899999988653

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=5.4e-09  Score=64.81  Aligned_cols=46  Identities=28%  Similarity=0.624  Sum_probs=38.8

Q ss_pred             CCCCcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ..++..|.||++..   ..+..+||+|. ||..|+..     ...||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           12 EENSKDCVVCQNGT---VNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCCSSCCSSSSSSC---CCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCCcCcCC---CCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            45567999999887   67888999999 99999884     4789999998854

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.63  E-value=5.3e-09  Score=66.71  Aligned_cols=43  Identities=28%  Similarity=0.624  Sum_probs=36.9

Q ss_pred             CcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      +..|.||++.+   ..+..+||||. ||..|+..|     ..||+||+.+..
T Consensus        18 ~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEE---INSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSB---CCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred             CCEeEEeCccc---CcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence            46899999988   67888999999 999998875     379999998754

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.59  E-value=1.6e-08  Score=66.26  Aligned_cols=50  Identities=24%  Similarity=0.737  Sum_probs=37.7

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC-------CCCCcc--ccCc
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL-------NVTCPL--CRTP  145 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-------~~~CP~--Cr~~  145 (158)
                      ++...|+||++.+.........+|+|.||..|+..++..+       ...||.  |+..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            3457899999998543333334799999999999998631       247999  9987

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.49  E-value=2.6e-08  Score=79.90  Aligned_cols=44  Identities=30%  Similarity=0.747  Sum_probs=38.5

Q ss_pred             CCcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ++..|+||++.+   ..+..+||||. ||..|+..|     ..||+||..+..
T Consensus       294 ~~~~C~IC~~~~---~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDKE---VSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSSB---CCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             CCCCCCccCCcC---CceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            457999999998   67888999999 999999987     579999998754

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.45  E-value=1.1e-07  Score=62.61  Aligned_cols=47  Identities=21%  Similarity=0.381  Sum_probs=39.9

Q ss_pred             ccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539          100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus       100 ~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      .|++|--++.  ...|.+||+|+||.+|+..|.++...+||.|+..+..
T Consensus         3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            5888888874  5678889999999999999987567899999998864

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.44  E-value=8.2e-08  Score=73.91  Aligned_cols=50  Identities=18%  Similarity=0.447  Sum_probs=40.2

Q ss_pred             CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcC-CCCCcc--ccCcCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYL-NVTCPL--CRTPLIP  148 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~-~~~CP~--Cr~~~~~  148 (158)
                      ..+..|+||++.|   ..++.. .|||.|++.||..|+... ..+||+  ||..+..
T Consensus       179 ~~el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          179 KIELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             BCCSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             ceeeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            3457999999999   566654 899999999999999742 357999  9987654

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.38  E-value=9.9e-08  Score=57.82  Aligned_cols=47  Identities=19%  Similarity=0.200  Sum_probs=40.9

Q ss_pred             cccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           99 HDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ..|+|+++.+   .+++.+ ++||+|.+.||.+|++. +.+||+.+.++..+
T Consensus         4 ~~CpIs~~~m---~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~   51 (61)
T 2bay_A            4 MLCAISGKVP---RRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIE   51 (61)
T ss_dssp             CCCTTTCSCC---SSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGG
T ss_pred             EEecCCCCCC---CCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChh
Confidence            5899999999   577888 89999999999999984 67899999988543

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.69  E-value=2.5e-05  Score=59.46  Aligned_cols=53  Identities=23%  Similarity=0.515  Sum_probs=40.4

Q ss_pred             CCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcC-CCCCccccCcCCCCCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYL-NVTCPLCRTPLIPEFED  152 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~-~~~CP~Cr~~~~~~~~~  152 (158)
                      .-..|.+|.+....|   ..- .|+|.||..|+..|++.. +..||.|+.......++
T Consensus       179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~  233 (238)
T 3nw0_A          179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK  233 (238)
T ss_dssp             TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred             CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence            357899999998644   233 399999999999999742 34899999887655443

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.07  E-value=0.029  Score=36.31  Aligned_cols=32  Identities=19%  Similarity=0.430  Sum_probs=24.5

Q ss_pred             CcccccccccccCCCCeEE--eCCCChhhHhhHHHH
Q 031539           98 EHDCSVCLTEFEPQSDINN--LSCGHLFHKVCLEKW  131 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~--l~C~H~fh~~Ci~~w  131 (158)
                      +..|.+|.+.+.  .....  +.|+|.|+..|+..+
T Consensus         3 e~~C~~C~~~~~--~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPA--QDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSC--CBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCC--CCceEECCcCChHHhHHHCHHH
Confidence            468999997642  23333  789999999999983

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=93.61  E-value=0.056  Score=32.66  Aligned_cols=50  Identities=22%  Similarity=0.400  Sum_probs=34.0

Q ss_pred             CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCC---CCCccccCcCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLN---VTCPLCRTPLIP  148 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~---~~CP~Cr~~~~~  148 (158)
                      ...+..|.||.+.    .+...- .|...||..|++..+...-   =.||.|++...+
T Consensus         9 ~~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p   62 (66)
T 2lri_C            9 LAPGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP   62 (66)
T ss_dssp             CCTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred             CCCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence            3455789999743    233333 5999999999988776321   259999765443

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=93.00  E-value=0.028  Score=33.51  Aligned_cols=52  Identities=17%  Similarity=0.389  Sum_probs=35.0

Q ss_pred             CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHh----cCCCCCccccCcC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD----YLNVTCPLCRTPL  146 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~----~~~~~CP~Cr~~~  146 (158)
                      ..++..|++|...+.++...+.- .|...||..|+.--..    .....||.|+..-
T Consensus         3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~   59 (64)
T 1we9_A            3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred             CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence            35567899999887544444444 5999999999854221    1345799997643

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=87.58  E-value=0.21  Score=36.22  Aligned_cols=48  Identities=19%  Similarity=0.425  Sum_probs=33.2

Q ss_pred             cccccccccccCCCC---eEEe-CCCChhhHhhHHHH------Hh----cCCCCCccccCcC
Q 031539           99 HDCSVCLTEFEPQSD---INNL-SCGHLFHKVCLEKW------LD----YLNVTCPLCRTPL  146 (158)
Q Consensus        99 ~~C~iCl~~~~~~~~---~~~l-~C~H~fh~~Ci~~w------~~----~~~~~CP~Cr~~~  146 (158)
                      ..|+||...+.+++.   .+.- .|...||..|+.--      +.    .....||.|+..-
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence            569999999976653   4444 49999999997321      11    0156899998754

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=87.35  E-value=0.12  Score=31.70  Aligned_cols=54  Identities=17%  Similarity=0.348  Sum_probs=35.1

Q ss_pred             CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc---CCCCCccccCcCCCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY---LNVTCPLCRTPLIPE  149 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~~~~~~  149 (158)
                      ..+...|.+|.... +++..+.- .|...||..|+..-...   ..-.||.|+..+...
T Consensus        15 ~~~~~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~   72 (75)
T 2k16_A           15 GNQIWICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD   72 (75)
T ss_dssp             SCEEECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred             CCCCcCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence            44556799998775 23333333 59999999998754331   134599997765443

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=86.90  E-value=0.51  Score=42.35  Aligned_cols=50  Identities=22%  Similarity=0.153  Sum_probs=42.9

Q ss_pred             CCCcccccccccccCCCCeEEeCCC-ChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCG-HLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~-H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      -+...|+|-++.|   ..++.+|.| +++-+..|.+|+. .+.+||+=|.++...
T Consensus       889 P~~F~cPIs~~lM---~DPVilpsG~~TydR~~I~~wl~-~~~tdP~Tr~~L~~~  939 (968)
T 3m62_A          889 PDEFLDPLMYTIM---KDPVILPASKMNIDRSTIKAHLL-SDSTDPFNRMPLKLE  939 (968)
T ss_dssp             CGGGBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCGG
T ss_pred             cHHhCCcchhhHH---hCCeEcCCCCEEECHHHHHHHHh-cCCCCCCCCCCCCcc
Confidence            3456899999999   789999987 6999999999998 488999999988653

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=86.33  E-value=1.3  Score=27.18  Aligned_cols=50  Identities=18%  Similarity=0.375  Sum_probs=31.8

Q ss_pred             CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHh----cCCCCCccccCcC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD----YLNVTCPLCRTPL  146 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~----~~~~~CP~Cr~~~  146 (158)
                      .+...| +|.....++...+.- .|...||..|+.---.    .....||.|+...
T Consensus        10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            334566 898876433344444 4999999999842211    1356799998654

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=84.71  E-value=0.75  Score=26.01  Aligned_cols=44  Identities=20%  Similarity=0.441  Sum_probs=27.9

Q ss_pred             ccccccccccCCCCeEEe--CCCChhhHhhHHHHH---hcCCCCCcccc
Q 031539          100 DCSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWL---DYLNVTCPLCR  143 (158)
Q Consensus       100 ~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~---~~~~~~CP~Cr  143 (158)
                      .|.+|...+.++...+.-  .|...||..|+.--.   ...+..||.|+
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            577888887544444333  388899999974211   12467799885

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=83.41  E-value=0.86  Score=27.18  Aligned_cols=34  Identities=29%  Similarity=0.680  Sum_probs=23.7

Q ss_pred             CCCCcccccccccccCCCCeEEe--CCCChhhHhhH
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNL--SCGHLFHKVCL  128 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci  128 (158)
                      ......|.+|..++.++...+.-  .|...||..|+
T Consensus         5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv   40 (65)
T 2vpb_A            5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT   40 (65)
T ss_dssp             ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred             CCCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence            34557899999998655444444  59999999997

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=81.88  E-value=0.47  Score=29.04  Aligned_cols=49  Identities=20%  Similarity=0.387  Sum_probs=30.8

Q ss_pred             CcccccccccccCCCCeEEe-CCCChhhHhhHHHHH--------hcCCCCCccccCcCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWL--------DYLNVTCPLCRTPLIP  148 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~--------~~~~~~CP~Cr~~~~~  148 (158)
                      ...| +|..... +...+.- .|...||..|+.--.        ......||.|+..-.+
T Consensus        16 ~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p   73 (76)
T 1wem_A           16 ALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP   73 (76)
T ss_dssp             CCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred             CCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence            3566 8988764 2233333 599999999983211        1246789999765433

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=81.01  E-value=0.45  Score=33.74  Aligned_cols=48  Identities=21%  Similarity=0.499  Sum_probs=31.2

Q ss_pred             CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHh----cCCCCCccccC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD----YLNVTCPLCRT  144 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~----~~~~~CP~Cr~  144 (158)
                      .+...| +|.....++.....- .|...||..|+.--..    ...-.||.|+.
T Consensus         6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~   58 (174)
T 2ri7_A            6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS   58 (174)
T ss_dssp             -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred             CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence            455688 999886433334444 4999999999842211    13457999975

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=80.41  E-value=0.6  Score=26.17  Aligned_cols=44  Identities=30%  Similarity=0.585  Sum_probs=27.2

Q ss_pred             ccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc---CCCCCccccC
Q 031539          100 DCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY---LNVTCPLCRT  144 (158)
Q Consensus       100 ~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~  144 (158)
                      .|.||...-.. +....- .|...||..|+++=+..   ..-.||.|+.
T Consensus         2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            57888865322 233333 59999999999753332   1224998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	2e-11
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-10
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-09
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	4e-09
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	5e-08
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	7e-08
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-07
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	3e-07
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	4e-07
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-06
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	6e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	1e-04

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 53.7 bits (129), Expect = 2e-11
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 96  DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
           D   +C+VCL E E   +   L  CGH FH  C++ WL   + TCPLCR  ++
Sbjct: 3   DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 2e-10
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 87  KYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
           +YE           C +C    +   D+    CGHL    CL  W +     CP CR  +
Sbjct: 12  QYELYCEMGSTFQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 1e-09
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 98  EHDCSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLCRTPL------IPE 149
           +  C  C T       +  +   CGH   + C++         CP C TPL      +  
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL 62

Query: 150 FED 152
           FED
Sbjct: 63  FED 65

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 48.0 bits (114), Expect = 4e-09
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
           C +CL +    +    L C H F  VC+ +W+   N TCPLC+ P+
Sbjct: 8   CPICLEDPS--NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPV 50

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 2e-08
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 100 DCSVCLTEFE-PQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           +C +C+   E    +    +CG+   + C  +     N  CP CR P   +
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 5e-08
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148
           C +C       +D    SC HLF ++C+ + L  +   CP CR P  P
Sbjct: 26  CQICE---HILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 7e-08
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDPS 155
           C  C  E +       L C H     CLE       + CP+C+ P      D P+
Sbjct: 9   CQQCQAEAK---CPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG-ADTPA 55

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 2e-07
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 89  ETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY--LNVTCPLCRTPL 146
           + +++      +C +CL   +   +  +  C H+F K C+ K L+       CPLC+  +
Sbjct: 12  QNVINAMQKILECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

Query: 147 IPE 149
              
Sbjct: 69  TKR 71

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 42.9 bits (100), Expect = 3e-07
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 95  EDAEHDCSVCLTEFEPQ--SDINNLSCGHLFHKVCLEKWLD-YLNVTCPLCRTP 145
           ++    C +C  E   +              H+ CL  WL    N  C +C   
Sbjct: 3   DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 4e-07
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 91  LLHCEDAEHDCSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTP 145
             H  D   +C          +  +    C H FH  C+ +WL      CPL    
Sbjct: 28  RNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNRE 82

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 2e-06
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 98  EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWL-------DYLNVTCPLCRTPLIPEF 150
              C +CL E+  +       C  +F  +CL++++           ++CP    P     
Sbjct: 5   SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHL 64

Query: 151 EDD 153
           +++
Sbjct: 65  QEN 67

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 6e-06
 Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 5/77 (6%)

Query: 74  SYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSD-INNLSCGHLFHKVCLEKWL 132
            Y EE +          +     A     +  ++            C H FH +CL    
Sbjct: 15  KYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY 74

Query: 133 DYLN----VTCPLCRTP 145
              N    + CP C+T 
Sbjct: 75  CNGNKDGSLQCPSCKTI 91

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 1e-04
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 96  DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
           +    CS C         +    C H+F   C+      +   CP+C TP   +
Sbjct: 20  EKLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDC---IGTGCPVCYTPAWIQ 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.69
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.54
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.53
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.49
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.47
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.45
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.4
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.3
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.28
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.25
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.2
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.18
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.15
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.01
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.79
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.53
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	93.22
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	90.06
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	89.83
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	89.16
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	88.13
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	86.11
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	81.33

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.69  E-value=4.8e-18  Score=100.53  Aligned_cols=51  Identities=43%  Similarity=1.009  Sum_probs=45.5

Q ss_pred             CCCcccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      +++.+|+||+++|.+++.++.++ |+|.||..|+++|++ .+.+||+||+++.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~-~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHH-hCCcCCCCCCEeE
Confidence            45568999999999888888875 999999999999998 5889999999875

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.54  E-value=1.1e-15  Score=93.94  Aligned_cols=50  Identities=34%  Similarity=0.851  Sum_probs=42.4

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      ...++|+||++.+.  +.++.++|+|.||..|+.+|++ .+.+||+||+.+..
T Consensus         3 ~~~d~C~IC~~~~~--~~~~~~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~i~~   52 (68)
T d1chca_           3 TVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCC
T ss_pred             CCCCCCccCCcCcc--CCcEEeCCCCcCcHHHHHHHHH-hCCcCCCCCcchHh
Confidence            34568999999995  3466789999999999999998 48899999998753

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1e-15  Score=89.28  Aligned_cols=49  Identities=24%  Similarity=0.590  Sum_probs=41.0

Q ss_pred             ccccccccccCCCC-eEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539          100 DCSVCLTEFEPQSD-INNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP  148 (158)
Q Consensus       100 ~C~iCl~~~~~~~~-~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~  148 (158)
                      +|+||++.|.+++. ++.++|+|.||..|+++|++..+.+||+||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            79999999976544 44558999999999999998556679999998865

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.9e-15  Score=94.66  Aligned_cols=51  Identities=27%  Similarity=0.692  Sum_probs=43.7

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      +....|+||++.+   ..++.++|||.||..||.+|+..++.+||+||..|...
T Consensus        21 ~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          21 STFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             CCTTBCTTTSSSB---CCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCCCCccCCCcC---CCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            3445799999998   67889999999999999999975567899999998654

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-14  Score=88.38  Aligned_cols=53  Identities=25%  Similarity=0.500  Sum_probs=41.7

Q ss_pred             CCcccccccccccCCC--CeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           97 AEHDCSVCLTEFEPQS--DINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~--~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ++..|+||++.+..+.  ....++|+|.||..||.+|++..+..||+||+.+...
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccc
Confidence            4579999999764332  3455689999999999999975566899999988654

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.2e-14  Score=96.40  Aligned_cols=60  Identities=25%  Similarity=0.492  Sum_probs=45.3

Q ss_pred             CCCcccccccccccCC---------------CCeEEeCCCChhhHhhHHHHHhcC----CCCCccccCcCCCCCCCCCC
Q 031539           96 DAEHDCSVCLTEFEPQ---------------SDINNLSCGHLFHKVCLEKWLDYL----NVTCPLCRTPLIPEFEDDPS  155 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~---------------~~~~~l~C~H~fh~~Ci~~w~~~~----~~~CP~Cr~~~~~~~~~~~~  155 (158)
                      ..+..|+||++.+.+.               ..+..++|+|.||..||..|++..    +.+||+||+.+..+..++++
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~~qP~  101 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW  101 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCcCCCCC
Confidence            3456899999998532               234567899999999999999743    34799999998776555443

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.4e-14  Score=91.41  Aligned_cols=51  Identities=24%  Similarity=0.572  Sum_probs=41.7

Q ss_pred             CCCcccccccccccCCC---------------CeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539           96 DAEHDCSVCLTEFEPQS---------------DINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI  147 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~---------------~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~  147 (158)
                      ..++.|+||++.+.+..               .+..++|+|.||..||.+|++ .+.+||+||+...
T Consensus        19 ~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~   84 (88)
T d3dplr1          19 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE   84 (88)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred             CCCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHH-HCCcCCCCCCccc
Confidence            34567999998885432               356678999999999999998 6899999999864

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=7.3e-14  Score=89.36  Aligned_cols=52  Identities=31%  Similarity=0.730  Sum_probs=44.7

Q ss_pred             CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFED  152 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~  152 (158)
                      ...|+||++.+   ..++.++|||.||..||.+|++..+..||.||.++.+....
T Consensus        23 ~l~C~IC~~~~---~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~   74 (86)
T d1rmda2          23 SISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE   74 (86)
T ss_dssp             HTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred             CcCCccCCcch---hcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhcc
Confidence            36899999999   67889999999999999999976667899999998765433

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.4e-13  Score=81.20  Aligned_cols=48  Identities=27%  Similarity=0.528  Sum_probs=39.9

Q ss_pred             CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFE  151 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~  151 (158)
                      +...|+||++.+   ..++.++|+|.||..|+++|    +.+||+||+.+.....
T Consensus         5 ~~l~C~IC~~~~---~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           5 QFLRCQQCQAEA---KCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CCSSCSSSCSSC---BCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSS
T ss_pred             CCCCCcccCccc---CCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCC
Confidence            446999999999   46778999999999998754    5679999999876543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.9e-13  Score=86.72  Aligned_cols=50  Identities=28%  Similarity=0.709  Sum_probs=41.6

Q ss_pred             CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCC--CCCccccCcCCCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLN--VTCPLCRTPLIPEF  150 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~--~~CP~Cr~~~~~~~  150 (158)
                      ...|+||++.|   ..++.++|||.||..||.+|++..+  ..||+||..+....
T Consensus        21 ~l~CpIC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          21 ILECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             HTSCSSSCCCC---SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             CcCCCccCchh---CCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence            46899999999   5677789999999999999997422  47999999986543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=6.5e-13  Score=78.26  Aligned_cols=46  Identities=20%  Similarity=0.208  Sum_probs=40.4

Q ss_pred             ccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539          100 DCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus       100 ~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      .|+||++.+   .++..++ |||.||+.||.+|++ ++.+||+||+++..+
T Consensus         2 ~C~Ic~~~~---~~Pv~~~~cGh~fc~~cI~~~l~-~~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVP---RRPVLSPKSRTIFEKSLLEQYVK-DTGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCC---SSEEEETTTTEEEEHHHHHHHHH-HHSBCTTTCCBCCGG
T ss_pred             CCccCCchH---HhcCccCCCCCcccHHHHHHHHh-hccCCCccCCcCCHH
Confidence            699999999   6777775 999999999999998 478999999988654

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=5.9e-12  Score=79.22  Aligned_cols=51  Identities=16%  Similarity=0.196  Sum_probs=44.3

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      .++..|+||++.|   ..++.++|||.|+..||.+|+...+.+||.||..+...
T Consensus         5 P~~l~CpIc~~l~---~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           5 PDYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             CSTTBCTTTCSBC---SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CccccCcCcCchh---hhhcccCCcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            4567999999999   67888999999999999999975677899999987643

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.18  E-value=8.8e-12  Score=78.00  Aligned_cols=51  Identities=25%  Similarity=0.516  Sum_probs=44.5

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      .++..|+||++.|   .+++.++|||.|++.||.+|++.....||.|+..+...
T Consensus         6 P~~l~CpIc~~~m---~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           6 PEYFRCPISLELM---KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCC---SSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CccCCCcCcCchh---hCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            4568999999999   67888999999999999999975567899999988654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.15  E-value=9.9e-12  Score=74.00  Aligned_cols=50  Identities=22%  Similarity=0.464  Sum_probs=38.1

Q ss_pred             CCCCcccccccccccCCCCeEEeC-----CCChhhHhhHHHHHhc-CCCCCccccCcCC
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLS-----CGHLFHKVCLEKWLDY-LNVTCPLCRTPLI  147 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~-----C~H~fh~~Ci~~w~~~-~~~~CP~Cr~~~~  147 (158)
                      .++...|.||++.+.+   ....+     |+|.||..||.+|+.. .+.+||+||+.+.
T Consensus         3 ded~~~C~IC~~~~~~---~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGN---ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSC---CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCC---ceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            3556789999998743   23333     4599999999999953 4568999999864

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.3e-11  Score=79.09  Aligned_cols=46  Identities=28%  Similarity=0.665  Sum_probs=37.8

Q ss_pred             CcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      ...|+||++.|   ..++.+ +|||.||..||.+|+.   ..||.||..+...
T Consensus        22 ~l~C~IC~~~~---~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~   68 (97)
T d1jm7b_          22 LLRCSRCTNIL---REPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQ   68 (97)
T ss_dssp             TTSCSSSCSCC---SSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCS
T ss_pred             cCCCccCCchh---hcCceeCCCCCchhHHHHHHHHh---ccccccCCcCchh
Confidence            46899999999   455554 7999999999999985   3599999987653

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.7e-09  Score=69.27  Aligned_cols=50  Identities=20%  Similarity=0.159  Sum_probs=43.1

Q ss_pred             CCCcccccccccccCCCCeEEeCCC-ChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCG-HLFHKVCLEKWLDYLNVTCPLCRTPLIPE  149 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~-H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~  149 (158)
                      .++..|+||.+.|   ..+++++|+ |.|++.||.+|+. .+.+||+||.++...
T Consensus        20 P~~f~CPI~~~lm---~dPV~~~~~~~ty~r~~I~~~l~-~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          20 CDEFLDPIMSTLM---CDPVVLPSSRVTVDRSTIARHLL-SDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHTT-TSCBCTTTCSBCCTT
T ss_pred             cHHhCCcCchhHH---HHHHhcccccchhhHHHHHHHHH-hcCCcccccccccch
Confidence            3468999999999   788899866 5899999999998 588999999988654

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.3e-08  Score=65.21  Aligned_cols=49  Identities=22%  Similarity=0.677  Sum_probs=37.1

Q ss_pred             CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC-------CCCCccccC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL-------NVTCPLCRT  144 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-------~~~CP~Cr~  144 (158)
                      +....|+||++++...+.++.++|+|.||..|+..|++.+       ...||.|+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            4557999999998654445566899999999999999631       125998643

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.22  E-value=0.012  Score=33.74  Aligned_cols=51  Identities=18%  Similarity=0.395  Sum_probs=34.4

Q ss_pred             CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHh----cCCCCCccccCcC
Q 031539           96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD----YLNVTCPLCRTPL  146 (158)
Q Consensus        96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~----~~~~~CP~Cr~~~  146 (158)
                      ..+..|.+|.+...+++..+.- .|+..||..|+..=..    .....||.|+..-
T Consensus         4 ~~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~   59 (64)
T d1we9a_           4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred             CCCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcC
Confidence            4557999999877555444444 5999999999853111    1245799997643

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.12  Score=31.00  Aligned_cols=33  Identities=27%  Similarity=0.683  Sum_probs=25.1

Q ss_pred             CCCCcccccccccccCCCCeEEeC---CCChhhHhhHHHH
Q 031539           95 EDAEHDCSVCLTEFEPQSDINNLS---CGHLFHKVCLEKW  131 (158)
Q Consensus        95 ~~~~~~C~iCl~~~~~~~~~~~l~---C~H~fh~~Ci~~w  131 (158)
                      ...|..|.|| +.+...+   .+|   |+.+||..|+.+-
T Consensus        12 v~~D~mC~vC-~v~t~~~---l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          12 VVNDEMCDVC-EVWTAES---LFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTT-CCCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred             CCcCcccccc-Ccccccc---eecceeecchhhHHHHHHh
Confidence            4567899999 6774333   334   8899999999986

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=0.051  Score=29.43  Aligned_cols=44  Identities=30%  Similarity=0.643  Sum_probs=28.6

Q ss_pred             ccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcC---CCCCccccC
Q 031539          100 DCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYL---NVTCPLCRT  144 (158)
Q Consensus       100 ~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~---~~~CP~Cr~  144 (158)
                      .|.||...-. ++....- .|...||..|++.-+...   .-.||.||.
T Consensus         2 ~C~vC~~~~~-~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCC-CCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            5888876542 2233333 599999999998765421   124999875

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.16  E-value=0.041  Score=32.69  Aligned_cols=49  Identities=22%  Similarity=0.408  Sum_probs=30.7

Q ss_pred             CcccccccccccCCCCeEEe---CCCChhhHhhHHH----HHh----cCCCCCccccCcCCC
Q 031539           98 EHDCSVCLTEFEPQSDINNL---SCGHLFHKVCLEK----WLD----YLNVTCPLCRTPLIP  148 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l---~C~H~fh~~Ci~~----w~~----~~~~~CP~Cr~~~~~  148 (158)
                      ...| ||......+ .....   .|...||..|+.-    ...    .....||.|+..-.+
T Consensus        16 ~~~C-~C~~~~~~~-~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~~p   75 (78)
T d1wewa_          16 KVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP   75 (78)
T ss_dssp             CCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred             ccEe-ECCCccCCC-cEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcCCC
Confidence            4567 898876433 34455   3999999999832    100    013569999765443

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.13  E-value=0.093  Score=30.38  Aligned_cols=45  Identities=27%  Similarity=0.531  Sum_probs=28.7

Q ss_pred             CcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcC---CCCCccccCcC
Q 031539           98 EHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYL---NVTCPLCRTPL  146 (158)
Q Consensus        98 ~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~---~~~CP~Cr~~~  146 (158)
                      ...|.+|..   .++ ...- .|...||..|+.+.+...   .-.||.|+..-
T Consensus         7 c~~C~~C~~---~~~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   55 (70)
T d1fp0a1           7 ATICRVCQK---PGD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   55 (70)
T ss_dssp             SSCCSSSCS---SSC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             CCCCCCCCC---cCE-EEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcC
Confidence            346666653   233 3333 599999999998776432   12499996543

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.11  E-value=0.86  Score=26.58  Aligned_cols=48  Identities=17%  Similarity=0.301  Sum_probs=30.5

Q ss_pred             ccccccccccCCCCeEEe-CCCChhhHhhHH--HH-Hhc-CCCCCccccCcCC
Q 031539          100 DCSVCLTEFEPQSDINNL-SCGHLFHKVCLE--KW-LDY-LNVTCPLCRTPLI  147 (158)
Q Consensus       100 ~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~--~w-~~~-~~~~CP~Cr~~~~  147 (158)
                      .+.||......+...+.- .|.-.||..|+.  .. ... .+..||.|+....
T Consensus        13 v~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~g   65 (79)
T d1wepa_          13 VYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG   65 (79)
T ss_dssp             CCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred             eEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcC
Confidence            444898876444334444 599999999984  21 111 2467999987543

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.33  E-value=0.74  Score=26.42  Aligned_cols=49  Identities=18%  Similarity=0.389  Sum_probs=29.8

Q ss_pred             CCcccccccccccCCCCeEEe-CCCChhhHhhHH----H--H--HhcCCCCCccccCcCC
Q 031539           97 AEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLE----K--W--LDYLNVTCPLCRTPLI  147 (158)
Q Consensus        97 ~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~----~--w--~~~~~~~CP~Cr~~~~  147 (158)
                      +...| ||......+ ..+.- .|.-.||..|+.    .  .  .......||.|+..-.
T Consensus        15 ~~~~C-iC~~~~~~~-~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~~~   72 (76)
T d1wema_          15 NALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG   72 (76)
T ss_dssp             TCCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred             CcCEE-ECCCccCCC-eEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcCcCC
Confidence            33567 898765322 33333 599999999982    1  1  1113578999965443