Citrus Sinensis ID: 031540

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLNIR
Secondary Structure (PSIPRED)
ccccccccccccEEEcccccccccccHHHHHHHHHHccccEEccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcHHccccEEEEEEccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
masssrndkkyDVFVsfrgedtrdnfTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIpvfylvdpsdarnqtgpfgisFSKLEERFKENPEKLQTWRKALKEAAslsgfhslnir
Flexible Loop (DISEMBL)
masssrndkkydVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKeaaslsgfhslnir
Low Complexity Region (SEG)
MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLNIR
Disordered region (IsUnstruct)
**********YDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDP**************************************************
Disordered Region (DISOPRED)
******N*KKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEER*****EKL*TWRKALKEAASLSGFHSLNIR
Disordered Region (DISEMBL)
********KKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLNIR
Disordered Region (DISPRO)
*******DKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKEAASLSGFHSL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLNIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
O82500	1095	Putative disease resistan	yes	no	0.974	0.140	0.532	3e-39
Q40392	1144	TMV resistance protein N	N/A	no	0.892	0.123	0.549	2e-38
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.924	0.112	0.463	2e-31
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.822	0.316	0.435	1e-25
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.886	0.395	0.390	4e-24
Q9SYC9	571	Vesicle-associated protei	no	no	0.962	0.266	0.360	5e-22
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.955	0.385	0.384	5e-19
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.746	0.062	0.292	4e-08
Q9FL92	1372	Probable WRKY transcripti	no	no	0.537	0.061	0.354	1e-06

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 1   MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNA 60
           MASSS N  +YDVF SFRGED R+NF SHL      + I TF DD + R   I   L  A
Sbjct: 1   MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60

Query: 61  IEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGI 120
           I  S ISV++FSE YASS WCLDEL++I++CK+E    V+PVFY VDPSD R QTG FG+
Sbjct: 61  IRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGM 120

Query: 121 SFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLN 156
           SF  LE    +  E+   WR+AL +AA++ G H  N
Sbjct: 121 SF--LETCCGKTEERQHNWRRALTDAANILGDHPQN 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/142 (54%), Positives = 98/142 (69%), Gaps = 1/142 (0%)

Query: 11  YDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVI 69
           YDVF+SFRGEDTR  FTSHL   L  + I+TF DD+ L  G  I   L  AIE S  +++
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 70  VFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERF 129
           VFSE YA+SRWCL+ELVKI+ECK  + Q VIP+FY VDPS  RNQ   F  +F + E ++
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 130 KENPEKLQTWRKALKEAASLSG 151
           K++ E +Q WR AL EAA+L G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 99/151 (65%), Gaps = 5/151 (3%)

Query: 3   SSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIE 62
           +SS   ++YDVF SFRGED RD+F SHL   L R    TFIDD++ R   I   L++AI+
Sbjct: 4   ASSSGSRRYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDEIERSRSIGPELLSAIK 62

Query: 63  ASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISF 122
            S I++++FS+ YASS WCL+ELV+I +C     Q+VIP+F+ VD S+ + QTG FG  F
Sbjct: 63  ESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVF 122

Query: 123 SKLEERFKENPE-KLQTWRKALKEAASLSGF 152
              EE  K   E + Q+W++AL   A ++G+
Sbjct: 123 ---EETCKAKSEDEKQSWKQALAAVAVMAGY 150

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 83/131 (63%), Gaps = 1/131 (0%)

Query: 13  VFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFS 72
           VF++FRG+D R  F S L  AL ++ I  FID+Q  RG  +  SL + I  S I++++FS
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82

Query: 73  EGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKEN 132
           EGY  S WC+DELVKI E   +   I+IP+FY +D    ++ TG FG +F  L ++++  
Sbjct: 83  EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPE 142

Query: 133 PEKLQTWRKAL 143
           P+KL  W +AL
Sbjct: 143 PKKLHKWTEAL 153

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 1/141 (0%)

Query: 13  VFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFS 72
           VF++FRG+D R+ F S L  A+   NI  FID     G ++    V  I+ S ++V++FS
Sbjct: 16  VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLFVR-IQESRVAVVIFS 74

Query: 73  EGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKEN 132
           + Y SS WCLDEL +I +C  +     IP+FY + PS      G FG +F  L+E++K +
Sbjct: 75  KDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGGFGDTFRVLKEKYKND 134

Query: 133 PEKLQTWRKALKEAASLSGFH 153
           PE+ Q W++AL+    L G  
Sbjct: 135 PERTQKWQEALESIPKLKGLR 155

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 90/158 (56%), Gaps = 6/158 (3%)

Query: 2   ASSSRND-----KKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISES 56
           A+SS +D      +Y VF++FRG++ R++F   L  A+  + I  F D+   RG  ++  
Sbjct: 344 AASSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN-Y 402

Query: 57  LVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTG 116
           L   IE S ++V +FSE Y  S WCLDELVK+ E  ++   +V+PVFY ++ +  +   G
Sbjct: 403 LFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMG 462

Query: 117 PFGISFSKLEERFKENPEKLQTWRKALKEAASLSGFHS 154
            FG +   LE  ++  PE++Q W++AL    S  G  S
Sbjct: 463 AFGDNLRNLEWEYRSEPERIQKWKEALSSVFSNIGLTS 500

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 82/156 (52%), Gaps = 5/156 (3%)

Query: 1   MASSSRNDKKY----DVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISES 56
           MASSS   K       VF+ FRG D R +F S L  AL   NI  FID+    G E++ +
Sbjct: 1   MASSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA-N 59

Query: 57  LVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTG 116
           L+  IE S +++++FS  +  S  CL+EL KI E K +   IVIP+FY V PS  +   G
Sbjct: 60  LLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEG 119

Query: 117 PFGISFSKLEERFKENPEKLQTWRKALKEAASLSGF 152
            FG +F  LE   +      Q W++AL+      G 
Sbjct: 120 KFGDNFRALERNNRHMLPITQKWKEALESIPGSIGM 155

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 29/147 (19%)

Query: 9   KKYDVFVSF-RGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAIS 67
           K YDV + + R + + ++F SHL ++LCR+ I  +  ++ N         V+A+    + 
Sbjct: 666 KDYDVVIRYGRADISNEDFISHLRASLCRRGISVY--EKFNE--------VDALPKCRVL 715

Query: 68  VIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEE 127
           +IV +  Y  S      L+ ILE +    ++V P+FY + P D         +  SK  E
Sbjct: 716 IIVLTSTYVPS-----NLLNILEHQHTEDRVVYPIFYRLSPYDF--------VCNSKNYE 762

Query: 128 RF--KENPEKLQTWRKALKEAASLSGF 152
           RF  ++ P+K   W+ ALKE   + G+
Sbjct: 763 RFYLQDEPKK---WQAALKEITQMPGY 786

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 8/93 (8%)

Query: 20  EDTRDNFTSHLCSALCRQNIQ-TFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASS 78
           E+ R +F SHL  AL R+ +   FID      D +S    + +E + +SV++       S
Sbjct: 14  EEVRYSFVSHLSKALQRKGVNDVFIDSD----DSLSNESQSMVERARVSVMILPGNRTVS 69

Query: 79  RWCLDELVKILECKKEYAQIVIPVFYLVDPSDA 111
              LD+LVK+L+C+K   Q+V+PV Y V  S+ 
Sbjct: 70  ---LDKLVKVLDCQKNKDQVVVPVLYGVRSSET 99

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
255561496	876	TMV resistance protein N, putative [Rici	1.0	0.180	0.613	7e-49
255564976	944	TMV resistance protein N, putative [Rici	0.943	0.157	0.651	2e-48
224145021	1561	tir-nbs-lrr resistance protein [Populus	0.974	0.098	0.621	1e-47
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.917	0.098	0.634	1e-47
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.974	0.122	0.615	5e-47
351722793	299	TIR-NBS-LRR type disease resistance prot	0.936	0.494	0.587	5e-47
357486483	242	TMV resistance protein N [Medicago trunc	0.955	0.623	0.582	5e-47
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.974	0.107	0.608	6e-47
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.949	0.133	0.62	1e-46
255555357	1094	leucine-rich repeat-containing protein,	0.949	0.137	0.626	1e-46

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 97/158 (61%), Positives = 120/158 (75%)

Query: 1   MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNA 60
           MA  + ++KKYDVF+SFRGEDTRDNFTSHL SAL ++ I TF+D ++ RG+EIS S+  A
Sbjct: 1   MAPLATSEKKYDVFLSFRGEDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSIAKA 60

Query: 61  IEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGI 120
           I+ S +SVI+FSE YA S+WCLDEL KILECKK   QIVIPVFY VDP   RNQ G F  
Sbjct: 61  IKGSKLSVIIFSEKYAFSKWCLDELTKILECKKMNGQIVIPVFYRVDPVHVRNQRGSFAC 120

Query: 121 SFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLNIR 158
           +F+K EE  KE  EK+++WR AL EA S+SG++SL  R
Sbjct: 121 AFAKHEETLKERMEKVESWRSALNEAGSISGWNSLVAR 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/149 (65%), Positives = 116/149 (77%)

Query: 10  KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVI 69
           KYDVFVSFRGEDTRDNFTSHL +AL ++ I+ F+DD+L+RG+EIS +LV  IE S +SVI
Sbjct: 15  KYDVFVSFRGEDTRDNFTSHLYAALHQKQIKAFVDDKLSRGEEISAALVKVIEESMVSVI 74

Query: 70  VFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERF 129
           +FSE YA S WCLDELVKILECKK   QIV+PVFY VDPSD   Q G FG +F + E+ F
Sbjct: 75  IFSENYAFSPWCLDELVKILECKKTVGQIVLPVFYHVDPSDVAEQKGGFGAAFIEHEKCF 134

Query: 130 KENPEKLQTWRKALKEAASLSGFHSLNIR 158
           KE  +KLQ WR AL EAA++SG+ S  IR
Sbjct: 135 KERIDKLQKWRAALTEAANISGWSSSVIR 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145021|ref|XP_002325498.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862373|gb|EEE99879.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/156 (62%), Positives = 119/156 (76%), Gaps = 2/156 (1%)

Query: 1   MASSSRNDKK--YDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLV 58
           MASSS   +K  YDVF+SFRG+DTR+NFTSHLC  L RQ I+TFIDD+L RG+EI+ +L+
Sbjct: 1   MASSSAVARKWKYDVFLSFRGKDTRNNFTSHLCKDLRRQKIKTFIDDRLERGEEITPALL 60

Query: 59  NAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPF 118
             IE S +S+++FSE YASS WCLDELVKILECK+ Y QIV+PVFY VDPSD   QTG F
Sbjct: 61  KTIEESRVSIVIFSENYASSPWCLDELVKILECKETYGQIVLPVFYHVDPSDVDEQTGSF 120

Query: 119 GISFSKLEERFKENPEKLQTWRKALKEAASLSGFHS 154
           G +FS+LE+ FK    K+  WR  L  AAS+SG+ S
Sbjct: 121 GNAFSELEKNFKGKMGKVPRWRADLTYAASISGWDS 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/145 (63%), Positives = 113/145 (77%)

Query: 10  KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVI 69
           KYDVF+SFRG+DTRDNF SHL  ALCR+ I+TFIDD+L RG+EI+ +L+  IE S ISVI
Sbjct: 12  KYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGALLRTIEESRISVI 71

Query: 70  VFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERF 129
           +FS  YASS WC+DELVKILECKK Y QIV+PVFY VDPSD   QTG FG +F++LE  F
Sbjct: 72  IFSRNYASSPWCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQTGSFGNAFAELERNF 131

Query: 130 KENPEKLQTWRKALKEAASLSGFHS 154
           K+  +K+  WR  L  AA++SG+ S
Sbjct: 132 KQKMDKVPRWRADLTSAANISGWDS 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 96/156 (61%), Positives = 119/156 (76%), Gaps = 2/156 (1%)

Query: 1   MASSSR--NDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLV 58
           MASSS   + +KYDVF+SFRGEDTR+NFTSHL  ALCR+ I+TFIDD L RG+EI+ +L+
Sbjct: 1   MASSSSVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEITPALL 60

Query: 59  NAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPF 118
             IE S ISV++FS+ YASS WC+DELVKILECK+   QIV+PVFY VDPSD   QTG F
Sbjct: 61  KKIEESRISVVIFSKNYASSPWCVDELVKILECKETCGQIVLPVFYHVDPSDVDEQTGSF 120

Query: 119 GISFSKLEERFKENPEKLQTWRKALKEAASLSGFHS 154
           G +FS+LE  FK   +K+  WR  +  AAS+SG+ S
Sbjct: 121 GNAFSELENIFKGKMDKVPRWRADMTYAASISGWDS 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722793|ref|NP_001237768.1| TIR-NBS-LRR type disease resistance protein [Glycine max] gi|223452578|gb|ACM89616.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 115/148 (77%)

Query: 11  YDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIV 70
           +DVF+SFRGEDTR  FTSHL +AL R  ++T+ID++L RGDEIS SL+ AI+ + ++VIV
Sbjct: 19  HDVFLSFRGEDTRYTFTSHLYAALTRLQVKTYIDNELERGDEISPSLLRAIDDAKVAVIV 78

Query: 71  FSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFK 130
           FSE YASSRWCLDELVKI+ECK++  QI++PVFY VDP+  R+QTG +G +F+  E+RF 
Sbjct: 79  FSENYASSRWCLDELVKIMECKRKNGQIIVPVFYHVDPTHVRHQTGSYGHAFAMHEQRFV 138

Query: 131 ENPEKLQTWRKALKEAASLSGFHSLNIR 158
            N  K+QTWR  L E A++SG+  L  R
Sbjct: 139 GNMNKVQTWRLVLGEVANISGWDCLTTR 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486483|ref|XP_003613529.1| TMV resistance protein N [Medicago truncatula] gi|355514864|gb|AES96487.1| TMV resistance protein N [Medicago truncatula] gi|388497304|gb|AFK36718.1| unknown [Medicago truncatula] gi|388511843|gb|AFK43983.1| unknown [Medicago truncatula]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 88/151 (58%), Positives = 118/151 (78%)

Query: 2   ASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAI 61
            SS+   +K++VF+SFRGEDTR  FTSHL + L R ++ T+ID  L RGDEIS +L+ AI
Sbjct: 5   TSSNTPQQKHEVFLSFRGEDTRYTFTSHLHATLTRLDVGTYIDYHLQRGDEISSALLRAI 64

Query: 62  EASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGIS 121
           E +++SV+VFS+ Y +S+WCLDELVKILECKK   QIV+P+FY ++PSD RNQTG +  +
Sbjct: 65  EEASLSVVVFSKNYGNSKWCLDELVKILECKKMRGQIVLPIFYDIEPSDVRNQTGSYADA 124

Query: 122 FSKLEERFKENPEKLQTWRKALKEAASLSGF 152
           F K EERF  N E++Q WR+AL+EAA+LSG+
Sbjct: 125 FVKHEERFHGNLERVQKWREALREAANLSGW 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/156 (60%), Positives = 120/156 (76%), Gaps = 2/156 (1%)

Query: 1   MASSSR--NDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLV 58
           MASSS   +  KYDVF+SFRG+DTR+NFTSHL  ALCR+ I+TFIDD+L RG EI+ +L+
Sbjct: 1   MASSSAVAHKWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDRLERGGEITPALL 60

Query: 59  NAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPF 118
             IE S ISV++FS+ YASS WC+DELVKILECK+ Y QIV+PVFY V+PSD   QTG F
Sbjct: 61  KTIEESRISVVIFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVNPSDVDEQTGSF 120

Query: 119 GISFSKLEERFKENPEKLQTWRKALKEAASLSGFHS 154
           G +F++LE+ FK   +K+  WR  L  AAS+SG+ S
Sbjct: 121 GNAFAELEKNFKGKMDKVPRWRADLTNAASISGWDS 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/150 (62%), Positives = 117/150 (78%)

Query: 9   KKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISV 68
           +KYDVF+SFRGEDTR  F SHL +AL R+ I TFID +LNRG+EIS SL+ AIE S +SV
Sbjct: 13  EKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKLSV 72

Query: 69  IVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEER 128
           +VFS+ YASS+WCL+EL KILECKK   Q+VIPVFY VDPS  RNQTG F  +F++ ++ 
Sbjct: 73  VVFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHDQL 132

Query: 129 FKENPEKLQTWRKALKEAASLSGFHSLNIR 158
            KE  EK+  WR A++EAA+LSG+ S NI+
Sbjct: 133 LKEKMEKVLNWRAAMREAANLSGWDSHNIK 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 114/150 (76%)

Query: 9   KKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISV 68
           +KYDVF+SFRGEDTR NFTSHL +AL  + I TFIDD L RG+EIS SL+ AIE S ISV
Sbjct: 21  EKYDVFLSFRGEDTRYNFTSHLHAALNGKKIPTFIDDDLERGNEISPSLLKAIEESKISV 80

Query: 69  IVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEER 128
           ++ S+ Y SS+WCL+ELVKILEC K   Q+VIPVFY VDPS  RNQTG F   F++ EE 
Sbjct: 81  VIISQDYPSSKWCLEELVKILECMKNRGQMVIPVFYRVDPSHVRNQTGSFEDVFARHEES 140

Query: 129 FKENPEKLQTWRKALKEAASLSGFHSLNIR 158
              + EK+Q+WR ALKE A+LSG+HS + R
Sbjct: 141 LSVSKEKVQSWRAALKEVANLSGWHSTSTR 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.873	0.440	0.545	2.1e-36
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.955	0.131	0.542	4.3e-36
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.974	0.140	0.532	6.4e-36
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.974	0.125	0.525	6.1e-33
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.955	0.123	0.483	9.8e-33
TAIR|locus:2160472	1038	AT5G41540 [Arabidopsis thalian	0.974	0.148	0.487	2e-32
TAIR|locus:2160487	1085	AT5G41550 [Arabidopsis thalian	0.974	0.141	0.480	4.5e-32
TAIR|locus:2130319	796	RLM3 "RESISTANCE TO LEPTOSPHAE	0.930	0.184	0.516	2.7e-31
TAIR|locus:2162439	1008	AT5G22690 [Arabidopsis thalian	0.968	0.151	0.467	3.6e-31
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.962	0.135	0.483	5.6e-31

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 78/143 (54%), Positives = 101/143 (70%)

Query:    10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVI 69
             K+DVF+SFR +DTRDNF SHLC  L R+ I+TF+ D+L   +   ESL  AIE S ISVI
Sbjct:     8 KHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESL-KAIEVSKISVI 66

Query:    70 VFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERF 129
             VFSE +  SRWCLDE+V IL+CK+++ QIVIPV Y VDP D  NQTG FG +F+K  ++ 
Sbjct:    67 VFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDK- 125

Query:   130 KENPEKLQTWRKALKEAASLSGF 152
                 E+LQ W+ +  EA +L G+
Sbjct:   126 ---AEQLQEWKDSFTEAINLPGW 145

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 401 (146.2 bits), Expect = 4.3e-36, P = 4.3e-36
 Identities = 83/153 (54%), Positives = 105/153 (68%)

Query:     1 MASSSRNDK-KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLV 58
             MASSS + +  YDVF+SFRGEDTR  FTSHL   L  + I+TF DD+ L  G  I   L 
Sbjct:     1 MASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELC 60

Query:    59 NAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPF 118
              AIE S  +++VFSE YA+SRWCL+ELVKI+ECK  + Q VIP+FY VDPS  RNQ   F
Sbjct:    61 KAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESF 120

Query:   119 GISFSKLEERFKENPEKLQTWRKALKEAASLSG 151
               +F + E ++K++ E +Q WR AL EAA+L G
Sbjct:   121 AKAFEEHETKYKDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 6.4e-36, P = 6.4e-36
 Identities = 83/156 (53%), Positives = 102/156 (65%)

Query:     1 MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNA 60
             MASSS N  +YDVF SFRGED R+NF SHL      + I TF DD + R   I   L  A
Sbjct:     1 MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60

Query:    61 IEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGI 120
             I  S ISV++FSE YASS WCLDEL++I++CK+E    V+PVFY VDPSD R QTG FG+
Sbjct:    61 IRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGM 120

Query:   121 SFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLN 156
             SF  LE    +  E+   WR+AL +AA++ G H  N
Sbjct:   121 SF--LETCCGKTEERQHNWRRALTDAANILGDHPQN 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 6.1e-33, P = 6.1e-33
 Identities = 82/156 (52%), Positives = 102/156 (65%)

Query:     1 MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNA 60
             MASSS     YDVF SF GED R +F SHL   L R++I TFID+ + R   I+  L++A
Sbjct:     1 MASSSSRSWTYDVFPSFSGEDVRKSFLSHLLKKLHRKSINTFIDNNIERSHAIAPDLLSA 60

Query:    61 IEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGI 120
             I  S IS++VFS+ YASS WCL+ELV+I +C KE  QIVIP+FY VDPSD R QT  FG 
Sbjct:    61 INNSMISIVVFSKKYASSTWCLNELVEIHKCYKELTQIVIPIFYEVDPSDVRKQTREFG- 119

Query:   121 SFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLN 156
              F K+    K    K Q W +AL+E AS++G  S N
Sbjct:   120 EFFKVTCVGKTEDVK-QQWIEALEEVASIAGHDSKN 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 9.8e-33, P = 9.8e-33
 Identities = 74/153 (48%), Positives = 102/153 (66%)

Query:     1 MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNA 60
             M SSS +  ++DVF+SFRG DTR+NFT HL  AL  + I +FIDD+L RGD ++ +L + 
Sbjct:     1 MESSSPSSAEFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNLT-ALFDR 59

Query:    61 IEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGI 120
             IE S I++IVFS  YA+S WCL ELVKILEC+    Q+V+P+FY VD SD   Q   F +
Sbjct:    60 IEKSKIAIIVFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKSDVEKQRNSFAV 119

Query:   121 SFSKLEERFKE-NPEKLQTWRKALKEAASLSGF 152
              F   E  F    PE++ +W+ AL  A+++ G+
Sbjct:   120 PFKLPELTFPGVTPEEISSWKAALASASNILGY 152

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2160472 AT5G41540 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 2.0e-32, P = 2.0e-32
 Identities = 76/156 (48%), Positives = 97/156 (62%)

Query:     1 MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNA 60
             MASSS + +KY VF SF G D R  F SHL      + I  F D ++ RG  I   LV A
Sbjct:     1 MASSSTHVRKYHVFPSFHGSDVRRKFLSHLRFHFAIKGIVAFKDQEIERGQRIGPELVQA 60

Query:    61 IEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGI 120
             I  S +S++V S+ Y SS WCLDELV+IL+CK++  QIV+P+FY +DPSD R Q+G FG 
Sbjct:    61 IRESRVSLVVLSKNYPSSSWCLDELVEILKCKEDQEQIVMPIFYEIDPSDVRKQSGDFGK 120

Query:   121 SFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLN 156
             +F K      +  E  Q W  AL EAA++ G HSLN
Sbjct:   121 AFGKT--CVGKTKEVKQRWTNALTEAANIGGEHSLN 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2160487 AT5G41550 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 4.5e-32, P = 4.5e-32
 Identities = 75/156 (48%), Positives = 98/156 (62%)

Query:     1 MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNA 60
             ++SSS N ++Y VF SF G D R  F SHL      + I TF D ++ +G+ I   LVNA
Sbjct:     3 LSSSSSNIRRYHVFPSFHGPDVRKGFLSHLHYHFASKGITTFKDQEIEKGNTIGPELVNA 62

Query:    61 IEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGI 120
             I  S +S+++ S+ YASS WCLDELV+IL+CK++  QIV+ +FY VDPS  R Q G FG 
Sbjct:    63 IRESRVSIVLLSKKYASSSWCLDELVEILKCKEDQGQIVMTIFYDVDPSSVRKQKGDFGS 122

Query:   121 SFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLN 156
             +F K  E   E  E  Q W KAL   A++ G HSLN
Sbjct:   123 TFMKTCEGKSE--EVKQRWTKALTHVANIKGEHSLN 156

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2130319 RLM3 "RESISTANCE TO LEPTOSPHAERIA MACULANS 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.7e-31, P = 2.7e-31
 Identities = 78/151 (51%), Positives = 101/151 (66%)

Query:     1 MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNA 60
             M SSS   + YDVF +FRGED R +  SHL   L R+ I TF D+++ R  +I+  L+ A
Sbjct:     1 MKSSS--SQSYDVFPNFRGEDVRHSLVSHLRKELDRKFINTFNDNRIERSRKITPELLLA 58

Query:    61 IEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGI 120
             IE S IS++VFS+ YASS WCLDELVKI EC ++  Q+VIP+FY VDPS  R QTG FG+
Sbjct:    59 IENSRISLVVFSKNYASSTWCLDELVKIQECYEKLDQMVIPIFYKVDPSHVRKQTGEFGM 118

Query:   121 SFSKLEERFKENPEKLQTWRKALKEAASLSG 151
              F +  +   EN EK + W +AL E A L+G
Sbjct:   119 VFGETCKGRTEN-EK-RKWMRALAEVAHLAG 147

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:2000071 "regulation of defense response by callose deposition" evidence=IMP

GO:0015979 "photosynthesis" evidence=RCA

TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 3.6e-31, P = 3.6e-31
 Identities = 73/156 (46%), Positives = 99/156 (63%)

Query:     1 MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNA 60
             MA S RN   YDVF SF GED R  F SH    L R+ I  F D+ + R   +   L  A
Sbjct:     1 MALSYRN-WLYDVFPSFSGEDVRVTFLSHFLKELDRKLISVFKDNDIQRSQSLDPELKLA 59

Query:    61 IEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGI 120
             I  S I+++VFS+ YA+S WCLDEL++I++CK+E+ QIVIPVFY +DP   R Q+G FGI
Sbjct:    60 IRDSRIAIVVFSKNYAASSWCLDELLEIVKCKEEFGQIVIPVFYGLDPCHVRKQSGEFGI 119

Query:   121 SFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLN 156
              F    +   +  +++Q WR+AL + A++ GFHS N
Sbjct:   120 VFENTCQT--KTDDEIQKWRRALTDVANILGFHSSN 153

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 5.6e-31, P = 5.6e-31
 Identities = 75/155 (48%), Positives = 100/155 (64%)

Query:     2 ASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAI 61
             +SSSRN   YDVF SF GED R  F SH    L R++I TF D+++ R   I+  LV AI
Sbjct:     5 SSSSRN-WSYDVFPSFSGEDVRKTFLSHFLRELERKSIITFKDNEMERSQSIAPELVEAI 63

Query:    62 EASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGIS 121
             + S I+VIVFS+ YASS WCL+EL++I+ C K   Q VIPVFY +DPS  R Q+G FG +
Sbjct:    64 KDSRIAVIVFSKNYASSSWCLNELLEIMRCNKYLGQQVIPVFYYLDPSHLRKQSGEFGEA 123

Query:   122 FSKLEERFKENPEKLQTWRKALKEAASLSGFHSLN 156
             F K  +   E  E    W++AL + +++ G+HS N
Sbjct:   124 FKKTCQNQTE--EVKNQWKQALTDVSNILGYHSKN 156

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-45
pfam01582	135	pfam01582, TIR, TIR domain	4e-43
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	8e-40
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	4e-17
pfam13676	102	pfam13676, TIR_2, TIR domain	6e-12

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  158 bits (400), Expect = 2e-45
 Identities = 73/155 (47%), Positives = 99/155 (63%), Gaps = 3/155 (1%)

Query: 2   ASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAI 61
           +SSSRN   YDVF SF GED R  F SH    L R+ I  F D+++ R   +   L  AI
Sbjct: 5   SSSSRN-WVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAI 63

Query: 62  EASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGIS 121
             S I+V+VFS+ YASS WCL+EL++I+ CK+E  Q+VIPVFY +DPS  R QTG FG +
Sbjct: 64  RDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEA 123

Query: 122 FSKLEERFKENPEKLQTWRKALKEAASLSGFHSLN 156
           F K  +   E+ +    W++AL + A++ G+HS N
Sbjct: 124 FEKTCQNKTEDEKIQ--WKQALTDVANILGYHSQN 156

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  138 bits (351), Expect = 4e-43
 Identities = 62/135 (45%), Positives = 87/135 (64%), Gaps = 3/135 (2%)

Query: 13  VFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIVF 71
           VFVSF G+D RD F SHL   L  + I+  IDD     G+ I E+L  AIE S  ++++F
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 72  SEGYASSRWCLDELVKILECKKE--YAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERF 129
           S  YASS WCLDELV+I++C  E    ++++P+FY VDPSD R Q+G FG +F K  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 130 KENPEKLQTWRKALK 144
            +  +K++ W+KAL 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  130 bits (330), Expect = 8e-40
 Identities = 64/142 (45%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 10  KYDVFVSFRG-EDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISV 68
           +YDVF+S+ G ED R+ F SHL   L    +  FIDD    G    E +  AIE S I++
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDLEEIDEAIEKSRIAI 59

Query: 69  IVFSEGYASSRWCLDELVKILECKKEYAQI-VIPVFYLVDPSDARNQTGPFGISFSKLEE 127
           +V S  YA S WCLDELV  LE   E   + VIP+FY V PSD R Q G F   F K   
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 128 RFKENPEKLQTWRKALKEAASL 149
           ++ E  EK Q W+KAL    S 
Sbjct: 120 KWPE-DEKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 73.7 bits (181), Expect = 4e-17
 Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 19/157 (12%)

Query: 3   SSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAI 61
           SSS + K  DVF++ RG DT+    + L   L R N++ F+D++ +  GD++ + + +AI
Sbjct: 19  SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAI 78

Query: 62  EASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGIS 121
               + V VFS  Y  S +CL EL  I+E KK     VIP+F  V PS  R         
Sbjct: 79  RNCKVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLR--------- 125

Query: 122 FSKLEERFKENPEKLQTWRKALKEAASLSG--FHSLN 156
              + +      E+++ +  AL+EA    G  F SL 
Sbjct: 126 ---VVDNGTCPDEEIRRFNWALEEAKYTVGLTFDSLK 159

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 58.4 bits (142), Expect = 6e-12
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 13  VFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFS 72
           VF+S+   D    +   L  AL    I+ ++D  +  G++  + +  A+ ++ + +++ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 73  EGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFG 119
             Y +S WC  E    LE  K     +IPV   ++  +     G  G
Sbjct: 59  PAYLASPWCRAEWGAALERGK----RLIPV--RLEDCEL---PGLLG 96

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.94
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.94
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.78
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.18
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.68
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.02
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.23
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	94.57
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	93.41
COG4271	233	Predicted nucleotide-binding protein containing TI	90.67
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	90.61
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	84.9

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=1.3e-45  Score=279.35  Aligned_cols=136  Identities=35%  Similarity=0.566  Sum_probs=124.2

Q ss_pred             CCCCCCCccEEEecccCcCcccHHHHHHHHHhcCCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhH
Q 031540            4 SSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCL   82 (158)
Q Consensus         4 ~~~~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~   82 (158)
                      ||++...|||||||+|+|+|++|++||+.+|+++||++|+|+. +.+|+.|.+.|.+||++|+++|+||||+|++|.||+
T Consensus        20 ~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCL   99 (187)
T PLN03194         20 SSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCL   99 (187)
T ss_pred             CCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHH
Confidence            3444469999999999999999999999999999999999998 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccceeeeEEeecCccccccc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhcccCccccC
Q 031540           83 DELVKILECKKEYAQIVIPVFYLVDPSDARNQ-TGPFGISFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLN  156 (158)
Q Consensus        83 ~El~~~~~~~~~~~~~iiPVf~~v~p~dvr~~-~~~f~~~f~~~~~~~~~~~e~~~~W~~al~~v~~~~G~~~~~  156 (158)
                      +||..|+++.    ..||||||+|+|+|||+| .|.             .+.+++++||.||++|++++|++++.
T Consensus       100 dEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~  157 (187)
T PLN03194        100 HELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDS  157 (187)
T ss_pred             HHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCC
Confidence            9999999863    479999999999999997 332             24799999999999999999998753

>PLN03210 Resistant to P

Probab=100.00  E-value=2.3e-45  Score=341.75  Aligned_cols=156  Identities=46%  Similarity=0.780  Sum_probs=147.9

Q ss_pred             CCCCCCCCC--CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHHhcCeEEEEeecCCccC
Q 031540            1 MASSSRNDK--KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASS   78 (158)
Q Consensus         1 m~~~~~~~~--~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S   78 (158)
                      ||+|||+++  +|||||||||+|+|++|++||+.+|.++||.+|.|+++++|+.|.+++.+||++|+++|||||++|++|
T Consensus         1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s   80 (1153)
T PLN03210          1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS   80 (1153)
T ss_pred             CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence            888877664  899999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhccceeeeEEeecCcccccccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhcccCccccCCC
Q 031540           79 RWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLNIR  158 (158)
Q Consensus        79 ~wc~~El~~~~~~~~~~~~~iiPVf~~v~p~dvr~~~~~f~~~f~~~~~~~~~~~e~~~~W~~al~~v~~~~G~~~~~~~  158 (158)
                      .||++||++|++|.++.+++|+||||+|+|+|||+|+|.||++|.+++++.  ++|++++||.||++|++++|+++.+++
T Consensus        81 ~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~  158 (1153)
T PLN03210         81 SWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWP  158 (1153)
T ss_pred             hHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCC
Confidence            999999999999999999999999999999999999999999999988753  478999999999999999999987653

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.94  E-value=1.3e-28  Score=180.16  Aligned_cols=132  Identities=34%  Similarity=0.584  Sum_probs=115.6

Q ss_pred             EEEecccCcCcccHHHHHHHHHhcC--CceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHHH
Q 031540           13 VFVSFRGEDTRDNFTSHLCSALCRQ--NIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKIL   89 (158)
Q Consensus        13 VFISy~~~D~~~~f~~~L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~   89 (158)
                      |||||++.+.+..|+++|..+|+++  |+++|++++ +.+|..+.++|.++|++|+++|+|+|++|+.|+||+.||..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999333568999999999999  999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHhhhcc--ceeeeEEeecCccccc-ccCCchHHHHHHHHHHhcCC--hHHHHHHHHHHH
Q 031540           90 ECKKEYA--QIVIPVFYLVDPSDAR-NQTGPFGISFSKLEERFKEN--PEKLQTWRKALK  144 (158)
Q Consensus        90 ~~~~~~~--~~iiPVf~~v~p~dvr-~~~~~f~~~f~~~~~~~~~~--~e~~~~W~~al~  144 (158)
                      ++..+.+  .+|+|||+++.+++++ .+.+.|+..|.........+  .+....|+.++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            9987644  7999999999999999 68889999998877765543  578999999875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.94  E-value=4.1e-26  Score=165.34  Aligned_cols=137  Identities=43%  Similarity=0.692  Sum_probs=115.1

Q ss_pred             CccEEEeccc-CcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHH
Q 031540           10 KYDVFVSFRG-EDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKI   88 (158)
Q Consensus        10 ~ydVFISy~~-~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~   88 (158)
                      .|||||||++ ++....|+.+|...|...|+.+|.|+....|.... +|.++|++|+++|+|+||+|..|+||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            5999999998 34456899999999999999999998633333333 999999999999999999999999999999999


Q ss_pred             HHHhhh-ccceeeeEEeecCcccccccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhc
Q 031540           89 LECKKE-YAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKEAAS  148 (158)
Q Consensus        89 ~~~~~~-~~~~iiPVf~~v~p~dvr~~~~~f~~~f~~~~~~~~~~~e~~~~W~~al~~v~~  148 (158)
                      +++..+ ...+||||+++..|+++.++.+.++..+.........+..+ +.|+.++..+.+
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            987654 56799999999889999999999999998875555433333 799999988764

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.78  E-value=6.9e-20  Score=126.51  Aligned_cols=87  Identities=31%  Similarity=0.539  Sum_probs=74.9

Q ss_pred             EEEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHHHHHh
Q 031540           13 VFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECK   92 (158)
Q Consensus        13 VFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~   92 (158)
                      |||||+++|.  .++..|...|++.|+++|+|.++.+|+.+.+.|.++|++|+..|+++|++|..|+||..|+..+.+  
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            8999999994  699999999999999999997689999999999999999999999999999999999999999843  


Q ss_pred             hhccceeeeEEee
Q 031540           93 KEYAQIVIPVFYL  105 (158)
Q Consensus        93 ~~~~~~iiPVf~~  105 (158)
                        .+..||||.++
T Consensus        77 --~~~~iipv~~~   87 (102)
T PF13676_consen   77 --RGKPIIPVRLD   87 (102)
T ss_dssp             --TSESEEEEECS
T ss_pred             --CCCEEEEEEEC
Confidence              45589999854

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.18  E-value=8.4e-11  Score=100.40  Aligned_cols=106  Identities=29%  Similarity=0.423  Sum_probs=80.9

Q ss_pred             CCccEEEecccCcCcccHHHHHHHHHhcCCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCc----cChhhHH
Q 031540            9 KKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYA----SSRWCLD   83 (158)
Q Consensus         9 ~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~----~S~wc~~   83 (158)
                      .+.||||||++.- ....++-|...|+-+|++||+|-+ +..|+ +.+.+.+.|...+.+|+|++||..    +...|.+
T Consensus       611 kq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeD  688 (832)
T KOG3678|consen  611 KQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCED  688 (832)
T ss_pred             CCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHHH
Confidence            3799999998764 467999999999999999999998 98887 456899999999999999999976    3444544


Q ss_pred             HHHHHHHHhhhccceeeeEEee---------cCcccccccCC
Q 031540           84 ELVKILECKKEYAQIVIPVFYL---------VDPSDARNQTG  116 (158)
Q Consensus        84 El~~~~~~~~~~~~~iiPVf~~---------v~p~dvr~~~~  116 (158)
                      ...+-+.|.-+.+..|||||-.         +-|.|++..+.
T Consensus       689 WVHKEl~~Afe~~KNIiPI~D~aFE~Pt~ed~iPnDirmi~k  730 (832)
T KOG3678|consen  689 WVHKELKCAFEHQKNIIPIFDTAFEFPTKEDQIPNDIRMITK  730 (832)
T ss_pred             HHHHHHHHHHHhcCCeeeeecccccCCCchhcCcHHHHHHHh
Confidence            4444444444445589999843         45666665443

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.68  E-value=4.3e-08  Score=70.76  Aligned_cols=89  Identities=21%  Similarity=0.378  Sum_probs=47.8

Q ss_pred             ccEEEecccCcCcccHHHHHHHHHhcC-------Ccee-ee---------cCC-cCCccchhHHHHHHHHhcCeEEEEee
Q 031540           11 YDVFVSFRGEDTRDNFTSHLCSALCRQ-------NIQT-FI---------DDQ-LNRGDEISESLVNAIEASAISVIVFS   72 (158)
Q Consensus        11 ydVFISy~~~D~~~~f~~~L~~~L~~~-------gi~~-f~---------d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS   72 (158)
                      |.|||||++.|.. ..+..|...+...       .+.. |.         +.. ....+.|...|.+.|.+|.++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            6799999999853 3777777777663       1211 11         111 22334788899999999999999999


Q ss_pred             cCCccChhhHHHHHHHHHHhhhccceeeeEEe
Q 031540           73 EGYASSRWCLDELVKILECKKEYAQIVIPVFY  104 (158)
Q Consensus        73 ~~y~~S~wc~~El~~~~~~~~~~~~~iiPVf~  104 (158)
                      ++...|.|+..|+..+++    .+..||.|.+
T Consensus        80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~  107 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK----KGKPIIGVYL  107 (130)
T ss_dssp             TT----HHHHHHHHHHTT----T---EEEEET
T ss_pred             CCcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence            999999999999998876    4557887765

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.02  E-value=4e-05  Score=56.06  Aligned_cols=64  Identities=23%  Similarity=0.379  Sum_probs=51.6

Q ss_pred             cEEEecccCcCc-ccHHHHHHHHHhcC-CceeeecCC-cC--CccchhHHHHHHHHhcCeEEEEeecCC
Q 031540           12 DVFVSFRGEDTR-DNFTSHLCSALCRQ-NIQTFIDDQ-LN--RGDEISESLVNAIEASAISVIVFSEGY   75 (158)
Q Consensus        12 dVFISy~~~D~~-~~f~~~L~~~L~~~-gi~~f~d~~-~~--~G~~i~~~i~~aI~~S~~~IvvlS~~y   75 (158)
                      -|||||+++... ...|..|...|++. |+.|.+|.. ..  ++..+..=+.+.+++++..|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999985443 36799999999999 999999986 53  355666667788999999999999554

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.23  E-value=0.0011  Score=47.83  Aligned_cols=96  Identities=20%  Similarity=0.191  Sum_probs=69.0

Q ss_pred             cEEEecccCcCcccHHHHHHHHHhcCCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCc-------------c
Q 031540           12 DVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYA-------------S   77 (158)
Q Consensus        12 dVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~-------------~   77 (158)
                      .|||.|+ .|.  ..+..+...|+..|+.+.+-.+ ...|..+.+.+.+.+.+|+.+|++++|+=.             .
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            4899997 553  5888999999988887666555 789999999999999999999999998522             2


Q ss_pred             ChhhHHHHHHHHHHhhhccceeeeEEe-ec-Cccccc
Q 031540           78 SRWCLDELVKILECKKEYAQIVIPVFY-LV-DPSDAR  112 (158)
Q Consensus        78 S~wc~~El~~~~~~~~~~~~~iiPVf~-~v-~p~dvr  112 (158)
                      ....+.|+..++...  +..+++-+.- ++ -|||+.
T Consensus        78 R~NVifE~G~f~g~L--Gr~rv~~l~~~~v~~PSDl~  112 (125)
T PF10137_consen   78 RQNVIFELGLFIGKL--GRERVFILVKGGVELPSDLS  112 (125)
T ss_pred             ccceeehhhHHHhhc--CcceEEEEEcCCccCCcccC
Confidence            345677888877643  2234444432 22 356654

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=94.57  E-value=0.14  Score=33.79  Aligned_cols=66  Identities=17%  Similarity=0.212  Sum_probs=48.1

Q ss_pred             cEEEecccCcCcccHHHHHHHHHhcCCceeeecCCc-CCccchhHHHHHHHHhcCeEEEEeecCCccC
Q 031540           12 DVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQL-NRGDEISESLVNAIEASAISVIVFSEGYASS   78 (158)
Q Consensus        12 dVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~-~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S   78 (158)
                      .||||-.-.|-. .--..|...|.+.|.....-+.+ ..+....+.+.+.|++|+++|.++-..|-..
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            389998767753 34567778887777655443332 3456667788999999999999999998754

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=93.41  E-value=0.84  Score=31.58  Aligned_cols=67  Identities=16%  Similarity=0.069  Sum_probs=49.9

Q ss_pred             ccHHHHHHHHHhcCCceeeecCC--cC-------CccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHHHHH
Q 031540           24 DNFTSHLCSALCRQNIQTFIDDQ--LN-------RGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILEC   91 (158)
Q Consensus        24 ~~f~~~L~~~L~~~gi~~f~d~~--~~-------~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~   91 (158)
                      ..+...+.+.|+.+|+.++...+  ..       ....+.+.-.++|++|++.|+++...- .+.-+..|+..+...
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~al   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYAL   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHC
Confidence            46889999999999999988764  21       123445555678999999999998766 556678899988763

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=90.67  E-value=1.6  Score=34.10  Aligned_cols=96  Identities=21%  Similarity=0.191  Sum_probs=67.1

Q ss_pred             cEEEecccCcCcccHHHHHHHHHhcC--CceeeecCCcCCccchhHHHHHHHHhcCeEEEEeecCCc-------------
Q 031540           12 DVFVSFRGEDTRDNFTSHLCSALCRQ--NIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYA-------------   76 (158)
Q Consensus        12 dVFISy~~~D~~~~f~~~L~~~L~~~--gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~-------------   76 (158)
                      .|||-|+++    ..+.....+|.+.  -..+|.|.-+..|..+.+.+.+-|.++..+|++.+|+=.             
T Consensus        84 kvFvv~ghd----~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~p  159 (233)
T COG4271          84 KVFVVSGHD----AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAFP  159 (233)
T ss_pred             eEEEEeccH----HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhccc
Confidence            899999654    3676777777644  346777776889999999999999999999999999844             


Q ss_pred             -cChhhHHHHHHHHHHhhhccceeeeEEee---c-Ccccccc
Q 031540           77 -SSRWCLDELVKILECKKEYAQIVIPVFYL---V-DPSDARN  113 (158)
Q Consensus        77 -~S~wc~~El~~~~~~~~~~~~~iiPVf~~---v-~p~dvr~  113 (158)
                       .......||..++.+.  +..+|+-+.-+   | -|||+..
T Consensus       160 raRqNVifELGm~mgrL--gRkrv~Il~k~~envelPSDi~G  199 (233)
T COG4271         160 RARQNVIFELGMFMGRL--GRKRVMILMKRDENVELPSDIAG  199 (233)
T ss_pred             cccccchhhHhhHHhhc--ccceEEEEecccccccCccccCc
Confidence             1233667888777643  22344333321   2 3777654

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=90.61  E-value=0.27  Score=39.75  Aligned_cols=96  Identities=18%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             CccEEEecccCcCcccHHHHHHHHHhc--CCceeeecCC----cCCccchhHHHHHHHH--hcCeEEEEeecCCccChhh
Q 031540           10 KYDVFVSFRGEDTRDNFTSHLCSALCR--QNIQTFIDDQ----LNRGDEISESLVNAIE--ASAISVIVFSEGYASSRWC   81 (158)
Q Consensus        10 ~ydVFISy~~~D~~~~f~~~L~~~L~~--~gi~~f~d~~----~~~G~~i~~~i~~aI~--~S~~~IvvlS~~y~~S~wc   81 (158)
                      .||+=|||.|+- | ..++....+++.  ..+..|+|..    +.+|+ +. .++.-+.  .|+..+|.+..+|..-.||
T Consensus       177 ~~DiG~SFaGEA-R-~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~-~~L~~~Y~~rC~~~~VF~~~~Y~~K~~c  252 (329)
T COG4916         177 PVDSGISFAGEA-R-NLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LV-STLDPGYDIRCVVTTVFNTGSYICKSTC  252 (329)
T ss_pred             ccceeeEeehhh-h-hHHHHHHHhhhcccCCceeeeechhhccccCcc-HH-HhcccccCceEEEEEEEeCCceEEeeee
Confidence            799999999985 4 699999999994  4567888864    34443 22 3333333  6888999999999999999


Q ss_pred             HHHHHHHHHHhhhccceeeeEEe-ecCcccc
Q 031540           82 LDELVKILECKKEYAQIVIPVFY-LVDPSDA  111 (158)
Q Consensus        82 ~~El~~~~~~~~~~~~~iiPVf~-~v~p~dv  111 (158)
                      ..|...+.+..  .-..+.||.| +++-+-+
T Consensus       253 ~~E~~~~r~~~--~~d~~~rI~~~~~d~~a~  281 (329)
T COG4916         253 HIEGLEGRLNP--ILDTGFRIKYLYADNIAI  281 (329)
T ss_pred             ccchhhccccc--cccccceEEEEecCCccc
Confidence            99987764421  1234566665 4444443

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=84.90  E-value=6.1  Score=24.72  Aligned_cols=61  Identities=20%  Similarity=0.152  Sum_probs=38.1

Q ss_pred             HHHHHHHhcCCceeeecCCcCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHHHHHhhhccceee
Q 031540           28 SHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVI  100 (158)
Q Consensus        28 ~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~~~~~~~ii  100 (158)
                      .-|+.-|++.|+++-....          ..+++...+-++++++|.+.-+.  ..++..+.+..+.++..||
T Consensus         8 ~a~~~~L~~~g~~v~~~~~----------~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl   68 (70)
T PF14258_consen    8 YALYQLLEEQGVKVERWRK----------PYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL   68 (70)
T ss_pred             HHHHHHHHHCCCeeEEecc----------cHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence            4577788888988843332          12344558889999999966553  3455555555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		1e-32
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		4e-31

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 94/149 (63%), Gaps = 3/149 (2%)
Query: 4   SSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDD-QLNRGDEISESLVNAIE 62
           SS    KYDVF+SFRG DTR NF S L   L R++I+TF DD +L  G   S  L + IE
Sbjct: 2   SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61
Query: 63  ASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISF 122
            S  +V+V SE YA+S WCLDELV I++ +K+ +  V+P+FY V+P+  R QTG     F
Sbjct: 62  VSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQF 121
Query: 123 SKLEERFKENPEKLQTWRKALKEAASLSG 151
            K   R  E+PEK+  WR+AL   A LSG
Sbjct: 122 KKHASR--EDPEKVLKWRQALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  130 bits (326), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 97/146 (66%), Gaps = 4/146 (2%)
Query: 10  KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTF-IDDQLNRGDEISESLVNAIEASAISV 68
           +Y+VF+SFRG DTR+ FT  L  +L R  I TF  DD+L +G EI  +L+ AI+ S I V
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 69  IVFSEGYASSRWCLDELVKILECKKEYA-QIVIPVFYLVDPSDARNQTGPFGISFSKLEE 127
            + S GYA S+WCL EL +I+  ++E   +I++P+FY+VDPSD R+QTG +  +F K   
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 128 RFKENPEKLQTWRKALKEAASLSGFH 153
           +F  + + +Q W+ ALK+   L G+H
Sbjct: 155 KF--DGQTIQNWKDALKKVGDLKGWH 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	9e-90
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	7e-87
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	3e-70
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	6e-20
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	1e-09
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	6e-09
2js7_A	160	Myeloid differentiation primary response protein M	1e-06
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  257 bits (660), Expect = 9e-90
 Identities = 73/155 (47%), Positives = 96/155 (61%), Gaps = 5/155 (3%)

Query: 1   MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVN 59
           M+S +    KYDVF+SFRG DTR NF S L   L R++I+TF DD+ L  G   S  L +
Sbjct: 1   MSSHTA--TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKS 58

Query: 60  AIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFG 119
            IE S  +V+V SE YA+S WCLDELV I++ +K+ +  V+P+FY V+P+  R QTG   
Sbjct: 59  PIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLA 118

Query: 120 ISFSKLEERFKENPEKLQTWRKALKEAASLSGFHS 154
             F K   R   +PEK+  WR+AL   A LSG  S
Sbjct: 119 EQFKKHASRE--DPEKVLKWRQALTNFAQLSGDCS 151

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  251 bits (644), Expect = 7e-87
 Identities = 68/158 (43%), Positives = 98/158 (62%), Gaps = 4/158 (2%)

Query: 3   SSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAI 61
           S S    +Y+VF+SFRG DTR+ FT  L  +L R  I TF DD  L +G EI  +L+ AI
Sbjct: 28  SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAI 87

Query: 62  EASAISVIVFSEGYASSRWCLDELVKILECKKEY-AQIVIPVFYLVDPSDARNQTGPFGI 120
           + S I V + S GYA S+WCL EL +I+  ++E   +I++P+FY+VDPSD R+QTG +  
Sbjct: 88  DQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKK 147

Query: 121 SFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLNIR 158
           +F K   +F  + + +Q W+ ALK+   L G+H     
Sbjct: 148 AFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKND 183

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  207 bits (530), Expect = 3e-70
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 4/144 (2%)

Query: 1   MASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVN 59
             +   +   +D+F+S   ED + +F   L   L     + + DD  L  GD +  S+  
Sbjct: 11  TNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDK 69

Query: 60  AIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFG 119
            + +S   ++V S  +    W   EL  + + +      ++P+++ V   +  + +    
Sbjct: 70  GLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMA 129

Query: 120 ISFSKLEERFKENPEKLQTWRKAL 143
              +        + +++     A+
Sbjct: 130 DKLAFNTSTK--SVDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 79.7 bits (197), Expect = 6e-20
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 3   SSSRNDKKYDVFVSFRGEDTRDNFTSHLCSAL--CRQNIQTFIDDQ-LNRGDEISESLVN 59
            SSR  K YDV V    ED        L S L     +++ F+  +    G  I   L  
Sbjct: 3   GSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQ 60

Query: 60  AIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSD 110
           A+ +S   V++ + G+    WC  ++++ L          IP+   +  + 
Sbjct: 61  ALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAA 111

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 7   NDKKYDVFVSFRGEDTRDNFTSHLCSAL--CRQNIQTFIDDQ-LNRGDEISESLVNAIEA 63
            + ++  F+S+   D      + L   L     +I   + +   + G  ISE++V+ IE 
Sbjct: 32  RNVRFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEK 90

Query: 64  SAISVIVFSEGYASSRWCLDELVKIL-ECKKEYAQIVIPVFY 104
           S  S+ V S  +  + WC  E          E +  +I +  
Sbjct: 91  SYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILL 132

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 50.9 bits (121), Expect = 6e-09
 Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 14/120 (11%)

Query: 9   KKYDVFVSFRGEDTR---------DNFTSHLCSAL--CRQNIQTFIDD-QLNRGDEISES 56
           K YD ++S+   D           + F   +   +       + FI D  L       E 
Sbjct: 1   KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIED 60

Query: 57  LVNAIEASAISVIVFSEGYA-SSRWCLDELVKIL-ECKKEYAQIVIPVFYLVDPSDARNQ 114
           +   ++ S   +IV +  Y     W + EL   L          VI +           Q
Sbjct: 61  VARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQ 120

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 6   RNDKKYDVFVSFRGEDTRDNFTSHLCSAL--CRQNIQTFIDDQ-LNRGDEISESLVNAIE 62
              +++D F+ +   D +  F   +   L      ++  + D+ +  G  +       IE
Sbjct: 12  HMPERFDAFICYCPSDIQ--FVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIE 69

Query: 63  A-SAISVIVFSEGYASSRWCLDELVKIL-ECKKEYAQIVIPVFY 104
                 V+V S+ Y  S+ C  +    L      + + +IP+ Y
Sbjct: 70  KRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKY 113

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 7   NDKKYDVFVSFRGEDTRDNFTSHLCSAL--CRQNIQTFIDDQ-LNRGDEISESLVNAIEA 63
            +  YD FVS+   D      + +   L       +  +  +    G  I ++++++IE 
Sbjct: 2   RNIXYDAFVSYSERD-AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEK 60

Query: 64  SAISVIVFSEGYASSRWCLDELVKIL-ECKKEYAQIVIPVFY 104
           S  +V V SE +  S W   EL         E     I +  
Sbjct: 61  SHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILL 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 28/205 (13%), Positives = 57/205 (27%), Gaps = 63/205 (30%)

Query: 1   MASSSRNDKK------YDVF-VSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEI 53
           +A       K      + +F ++ +  ++ +     L   L  Q     ID       + 
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQ-----IDPNWTSRSDH 219

Query: 54  SESLVNAIEA--SAISVIVFSEGYASSRWCLDEL--VKILE-----CK-------KEYAQ 97
           S ++   I +  + +  ++ S+ Y +    L  +   K        CK       K+   
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 98  IVIP----------------------VF--YL-VDPSDARNQ---TGPFGISFSKLEERF 129
            +                        +   YL   P D   +   T P  +S   + E  
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI--IAESI 337

Query: 130 KENPEKLQTWR----KALKEAASLS 150
           ++       W+      L      S
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESS 362

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 3   SSSRNDKKYDVFVSFRGEDT---RDNFTSHL-CSALCRQNIQTFIDDQ-LNRGDEISESL 57
            +  +  KYD ++ F  +D    ++    HL      +       +++    G+    ++
Sbjct: 663 GTEPDMYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANI 722

Query: 58  VNAIEASAISVIVFSEGYASSRWCLDEL 85
            +AI  S   V + S  +    WCL+  
Sbjct: 723 QDAIWNSRKIVCLVSRHFLRDGWCLEAF 750

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.95
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.92
2js7_A	160	Myeloid differentiation primary response protein M	99.92
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.92
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.76
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.14
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.07
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	93.83
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	90.92
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	82.44

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=2.2e-53  Score=326.87  Aligned_cols=146  Identities=45%  Similarity=0.823  Sum_probs=140.0

Q ss_pred             CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHH
Q 031540           10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKI   88 (158)
Q Consensus        10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~   88 (158)
                      +|||||||+++|+|+.|++||+.+|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|||+||++|.||++||..|
T Consensus        35 ~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I  114 (204)
T 3ozi_A           35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEI  114 (204)
T ss_dssp             CCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHH
T ss_pred             CCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHH
Confidence            8999999999999989999999999999999999987 999999999999999999999999999999999999999999


Q ss_pred             HHHhhh-ccceeeeEEeecCcccccccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhcccCccccCC
Q 031540           89 LECKKE-YAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLNI  157 (158)
Q Consensus        89 ~~~~~~-~~~~iiPVf~~v~p~dvr~~~~~f~~~f~~~~~~~~~~~e~~~~W~~al~~v~~~~G~~~~~~  157 (158)
                      ++|.++ ++++||||||+|+|++||+|+|.||++|.++++++  +++++++||.||++|++++|+++.+.
T Consensus       115 ~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~  182 (204)
T 3ozi_A          115 VRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKN  182 (204)
T ss_dssp             HHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred             HHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCC
Confidence            999875 57899999999999999999999999999999876  47999999999999999999999765

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=3.2e-53  Score=320.40  Aligned_cols=150  Identities=49%  Similarity=0.782  Sum_probs=127.4

Q ss_pred             CCCCCCCccEEEecccCcCcccHHHHHHHHHhcCCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhH
Q 031540            4 SSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCL   82 (158)
Q Consensus         4 ~~~~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~   82 (158)
                      |||...+|||||||+|+|+|++|++||+.+|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|||+||++|+||+
T Consensus         2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl   81 (176)
T 3jrn_A            2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCL   81 (176)
T ss_dssp             -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHH
T ss_pred             CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHH
Confidence            3344458999999999999989999999999999999999987 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccceeeeEEeecCcccccccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhcccCcccc
Q 031540           83 DELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKEAASLSGFHSL  155 (158)
Q Consensus        83 ~El~~~~~~~~~~~~~iiPVf~~v~p~dvr~~~~~f~~~f~~~~~~~~~~~e~~~~W~~al~~v~~~~G~~~~  155 (158)
                      +||..|++|.++++++||||||+|+|++||+|+|.||++|.+++++  .+++++++||.||++|++++|+++.
T Consensus        82 ~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           82 DELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            9999999999888999999999999999999999999999999987  5689999999999999999999874

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=8.5e-36  Score=220.56  Aligned_cols=131  Identities=18%  Similarity=0.312  Sum_probs=115.8

Q ss_pred             CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHH
Q 031540           10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKI   88 (158)
Q Consensus        10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~   88 (158)
                      +|||||||+++| +..|+.+|+.+|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|++|.||+.||..+
T Consensus        20 ~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~   98 (154)
T 3h16_A           20 PHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGL   98 (154)
T ss_dssp             SEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHH
T ss_pred             CceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHH
Confidence            899999999999 557999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccceeeeEEeecCcccccccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 031540           89 LECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKEA  146 (158)
Q Consensus        89 ~~~~~~~~~~iiPVf~~v~p~dvr~~~~~f~~~f~~~~~~~~~~~e~~~~W~~al~~v  146 (158)
                      +++..+++.+||||||+++|++|++|+|.|++.|.....     ...+.++-+.|.++
T Consensus        99 ~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l  151 (154)
T 3h16_A           99 FQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI  151 (154)
T ss_dssp             TCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence            998777788999999999999999999999987753322     33455555555544

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.95  E-value=1.9e-30  Score=190.69  Aligned_cols=126  Identities=21%  Similarity=0.318  Sum_probs=90.8

Q ss_pred             CCccEEEecccCcCcccHHHHHHHHHhc--CCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHH
Q 031540            9 KKYDVFVSFRGEDTRDNFTSHLCSALCR--QNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDEL   85 (158)
Q Consensus         9 ~~ydVFISy~~~D~~~~f~~~L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El   85 (158)
                      ..|||||||+++|+  .|+.+|..+|++  .|+++|++++ +.||+.+.++|.++|++|+++|+|+|++|++|.||+.|+
T Consensus         9 k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El   86 (146)
T 3ub2_A            9 KDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQM   86 (146)
T ss_dssp             SSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHH
T ss_pred             CcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHH
Confidence            48999999999997  489999999998  5999999998 999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccceeeeEEeecCcccc----cccCCc----hHHHHHHHHHHhcCChHHHHHHHHHH
Q 031540           86 VKILECKKEYAQIVIPVFYLVDPSDA----RNQTGP----FGISFSKLEERFKENPEKLQTWRKAL  143 (158)
Q Consensus        86 ~~~~~~~~~~~~~iiPVf~~v~p~dv----r~~~~~----f~~~f~~~~~~~~~~~e~~~~W~~al  143 (158)
                      ..|+.+......+||||+|+|+++++    +.....    ....|.++       .+.+.+|+.||
T Consensus        87 ~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~  145 (146)
T 3ub2_A           87 LQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred             HHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence            99999763334478899999986655    443321    23444444       46788898775

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.92  E-value=6.3e-27  Score=172.27  Aligned_cols=102  Identities=22%  Similarity=0.332  Sum_probs=91.4

Q ss_pred             CCccEEEecccCcCcccHHHH-HHHHHhcC--CceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHH
Q 031540            9 KKYDVFVSFRGEDTRDNFTSH-LCSALCRQ--NIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDE   84 (158)
Q Consensus         9 ~~ydVFISy~~~D~~~~f~~~-L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~E   84 (158)
                      ..|||||||+++|.  .|+.+ |..+|++.  |+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||+.|
T Consensus         4 ~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~E   81 (149)
T 1fyx_A            4 IXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYE   81 (149)
T ss_dssp             CCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred             ccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHH
Confidence            47999999999996  69986 99999986  999999998 99999999999999999999999999999999999999


Q ss_pred             HHHHHH-HhhhccceeeeEEe-ecCccccc
Q 031540           85 LVKILE-CKKEYAQIVIPVFY-LVDPSDAR  112 (158)
Q Consensus        85 l~~~~~-~~~~~~~~iiPVf~-~v~p~dvr  112 (158)
                      +..|++ +.++++.+||||+| ++.+..+.
T Consensus        82 l~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           82 LDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             SCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            999885 44566789999999 46665554

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.92  E-value=4.8e-26  Score=169.49  Aligned_cols=97  Identities=20%  Similarity=0.305  Sum_probs=88.3

Q ss_pred             CCccEEEecccCcCcccHHHHHHHHHhcC--CceeeecCC-cCCccchhHHHHHHHH-hcCeEEEEeecCCccChhhHHH
Q 031540            9 KKYDVFVSFRGEDTRDNFTSHLCSALCRQ--NIQTFIDDQ-LNRGDEISESLVNAIE-ASAISVIVFSEGYASSRWCLDE   84 (158)
Q Consensus         9 ~~ydVFISy~~~D~~~~f~~~L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~-~S~~~IvvlS~~y~~S~wc~~E   84 (158)
                      ..|||||||+++|.  .||.+|..+|++.  |+++|++++ +.||+.+.++|.++|+ +|+++|+|+|++|++|.||..|
T Consensus        15 ~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~E   92 (160)
T 2js7_A           15 ERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQ   92 (160)
T ss_dssp             TCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHH
T ss_pred             cceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHH
Confidence            38999999999994  7999999999984  699999988 9999999999999999 7999999999999999999999


Q ss_pred             HHHHHHHh-hhccceeeeEEeecC
Q 031540           85 LVKILECK-KEYAQIVIPVFYLVD  107 (158)
Q Consensus        85 l~~~~~~~-~~~~~~iiPVf~~v~  107 (158)
                      +..|+++. ++.+.+||||+|+.-
T Consensus        93 l~~a~~~~~~~~~~~vIpV~~~~~  116 (160)
T 2js7_A           93 TKFALSLSPGAHQKRLIPIKYKAM  116 (160)
T ss_dssp             HHHHHHHCTTHHHHTEEEEESSCC
T ss_pred             HHHHHHHHHccCCCEEEEEEEccc
Confidence            99999875 455679999999644

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.92  E-value=1.6e-25  Score=166.43  Aligned_cols=99  Identities=21%  Similarity=0.285  Sum_probs=87.6

Q ss_pred             CccEEEecccCcC---------cccHHHHHHH-HHh-cCCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCc-
Q 031540           10 KYDVFVSFRGEDT---------RDNFTSHLCS-ALC-RQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYA-   76 (158)
Q Consensus        10 ~ydVFISy~~~D~---------~~~f~~~L~~-~L~-~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~-   76 (158)
                      .|||||||+++|+         ++.|+.+|.. .|+ +.|+++|++++ +.||+.+.++|.++|++|+.+|+|+|++|+ 
T Consensus         2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~   81 (159)
T 1t3g_A            2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVV   81 (159)
T ss_dssp             CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHH
T ss_pred             CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhh
Confidence            6999999999996         3568888665 699 79999999998 999999999999999999999999999997 


Q ss_pred             cChhhHHHHHHHHHHh-hhccceeeeEEeecCc
Q 031540           77 SSRWCLDELVKILECK-KEYAQIVIPVFYLVDP  108 (158)
Q Consensus        77 ~S~wc~~El~~~~~~~-~~~~~~iiPVf~~v~p  108 (158)
                      .|.||..|+..|+++. .+++.+||||++.-.+
T Consensus        82 ~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           82 RRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             TTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             cChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence            9999999999999875 5567899999986333

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.92  E-value=4e-26  Score=172.63  Aligned_cols=102  Identities=22%  Similarity=0.368  Sum_probs=86.6

Q ss_pred             CccEEEecccCcCcccHHHH-HHHHHhc--CCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHH
Q 031540           10 KYDVFVSFRGEDTRDNFTSH-LCSALCR--QNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDEL   85 (158)
Q Consensus        10 ~ydVFISy~~~D~~~~f~~~-L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El   85 (158)
                      .|||||||+++|.  .|+.. |...|++  .|+++|+|++ +.||+.+.++|.++|++|+++|+|+||+|++|.||+.|+
T Consensus        35 ~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El  112 (178)
T 2j67_A           35 RFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF  112 (178)
T ss_dssp             CEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHH
T ss_pred             cceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHH
Confidence            8999999999996  69975 9999998  8999999998 999999999999999999999999999999999999999


Q ss_pred             HHHHHH-hhhccceeeeEEee-cCcccccc
Q 031540           86 VKILEC-KKEYAQIVIPVFYL-VDPSDARN  113 (158)
Q Consensus        86 ~~~~~~-~~~~~~~iiPVf~~-v~p~dvr~  113 (158)
                      ..|+++ .++++.+||||+|+ +.+.++..
T Consensus       113 ~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~  142 (178)
T 2j67_A          113 YFAHHNLFHENSDHIILILLEPIPFYCIPT  142 (178)
T ss_dssp             HHTTCC-------CEEEEESSCCCGGGSCT
T ss_pred             HHHHHHHHhcCCCEEEEEEecCCChHHCCh
Confidence            999864 35567799999995 55555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.76  E-value=2.9e-19  Score=160.43  Aligned_cols=95  Identities=19%  Similarity=0.323  Sum_probs=86.9

Q ss_pred             CccEEEecccCcCcccHH-HHHHHHHhc-----CCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhH
Q 031540           10 KYDVFVSFRGEDTRDNFT-SHLCSALCR-----QNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCL   82 (158)
Q Consensus        10 ~ydVFISy~~~D~~~~f~-~~L~~~L~~-----~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~   82 (158)
                      .|||||||+++|.  .|| ..|...|+.     .|+++|++++ +.||+.+.++|.++|++||++|+|+|++|+.|+||.
T Consensus       670 ~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~  747 (844)
T 3j0a_A          670 KYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCL  747 (844)
T ss_dssp             CCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTT
T ss_pred             eccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHH
Confidence            8999999999996  577 779999985     5899999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-hhccceeeeEEeec
Q 031540           83 DELVKILECK-KEYAQIVIPVFYLV  106 (158)
Q Consensus        83 ~El~~~~~~~-~~~~~~iiPVf~~v  106 (158)
                      .|+..|+.+. ++++.+||||||+-
T Consensus       748 ~e~~~a~~~~~~~~~~~~i~i~~~~  772 (844)
T 3j0a_A          748 EAFSYAQGRCLSDLNSALIMVVVGS  772 (844)
T ss_dssp             HHHHHHHSCCCCSSCTTEEEEESSC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEecc
Confidence            9999998764 56678999999963

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.14  E-value=1.1e-06  Score=61.10  Aligned_cols=72  Identities=7%  Similarity=-0.009  Sum_probs=52.8

Q ss_pred             CCccEEEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHH
Q 031540            9 KKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKI   88 (158)
Q Consensus         9 ~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~   88 (158)
                      .+|.+||||+.+| .   ...|...|.+.|+.. .|              +.|+.|.+.|++.++....|+||..|+..+
T Consensus         3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSH-H---HHHHHHHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHh-H---HHHHHHHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            3699999999988 2   444555554434432 22              578899999999999999999999999876


Q ss_pred             HHHhhhccceeeeEE
Q 031540           89 LECKKEYAQIVIPVF  103 (158)
Q Consensus        89 ~~~~~~~~~~iiPVf  103 (158)
                      .+    .+..|+-|.
T Consensus        64 ~~----~gkpIigV~   74 (111)
T 1eiw_A           64 RK----SSKPIITVR   74 (111)
T ss_dssp             TT----TTCCEEEEC
T ss_pred             HH----cCCCEEEEE
Confidence            54    455666664

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.07  E-value=0.0035  Score=46.96  Aligned_cols=105  Identities=19%  Similarity=0.139  Sum_probs=71.4

Q ss_pred             ccCcCcccHHHHHHHHHhcCCceeeecCC-c----C---C-ccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHH
Q 031540           18 RGEDTRDNFTSHLCSALCRQNIQTFIDDQ-L----N---R-GDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKI   88 (158)
Q Consensus        18 ~~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~----~---~-G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~   88 (158)
                      ..+|.  .+.+.|..--.+..+--|.|-+ .    .   . -..|-..+.+.|+.|..+|+++|++...|.|...|+..+
T Consensus        27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A  104 (189)
T 3hyn_A           27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG  104 (189)
T ss_dssp             GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence            34553  4667776666666665566653 2    1   2 235778888999999999999999999999999999888


Q ss_pred             HHHhhhccceeeeEEeecC-cccccccCCchHHHHHHHHH
Q 031540           89 LECKKEYAQIVIPVFYLVD-PSDARNQTGPFGISFSKLEE  127 (158)
Q Consensus        89 ~~~~~~~~~~iiPVf~~v~-p~dvr~~~~~f~~~f~~~~~  127 (158)
                      .+   +.+.+||-|..+-+ .+++..-.|.|......++.
T Consensus       105 i~---~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~~wp  141 (189)
T 3hyn_A          105 IG---TKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLWD  141 (189)
T ss_dssp             TT---TTCCCEEEEETTCCSGGGTBCTTSCBCHHHHHHHH
T ss_pred             HH---hcCCcEEEEECCccccchhhhccccchhhHhhcCC
Confidence            62   24567887775532 44555545555555554443

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=93.83  E-value=0.38  Score=34.94  Aligned_cols=67  Identities=12%  Similarity=0.108  Sum_probs=51.1

Q ss_pred             cHHHHHHHHHhcCCceeeecCC--cCCccchhHHHHHHHHhcCeEEEEeec--CCccChhhHHHHHHHHHH
Q 031540           25 NFTSHLCSALCRQNIQTFIDDQ--LNRGDEISESLVNAIEASAISVIVFSE--GYASSRWCLDELVKILEC   91 (158)
Q Consensus        25 ~f~~~L~~~L~~~gi~~f~d~~--~~~G~~i~~~i~~aI~~S~~~IvvlS~--~y~~S~wc~~El~~~~~~   91 (158)
                      .+...+...|++.|+.++...+  ...+..+...-.++|++|++.|.+++|  .-..+.-+..|+..+...
T Consensus        27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Al   97 (161)
T 2f62_A           27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL   97 (161)
T ss_dssp             HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHC
Confidence            6889999999999999888554  223345555567899999999999996  333455588899888763

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=90.92  E-value=2.1  Score=30.75  Aligned_cols=86  Identities=17%  Similarity=0.162  Sum_probs=55.1

Q ss_pred             CCCCCCCCCCccEEEecccC-cCc-ccHHHHHHHHHhcCCceeeecCCcC-----Ccc-------chhHHHHHHHHhcCe
Q 031540            1 MASSSRNDKKYDVFVSFRGE-DTR-DNFTSHLCSALCRQNIQTFIDDQLN-----RGD-------EISESLVNAIEASAI   66 (158)
Q Consensus         1 m~~~~~~~~~ydVFISy~~~-D~~-~~f~~~L~~~L~~~gi~~f~d~~~~-----~G~-------~i~~~i~~aI~~S~~   66 (158)
                      ||..+-+ ....|||+=.-. +.. ......+...|++.| .|+.+....     .|.       .+...-.+.|++|++
T Consensus         3 ~~~~~~~-~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~   80 (165)
T 2khz_A            3 MAASGEQ-APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADV   80 (165)
T ss_dssp             CCCCSSC-CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSE
T ss_pred             cccCCCC-CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCE
Confidence            5544443 345799984221 111 125688999999999 886544321     221       123344578999999


Q ss_pred             EEEEeecCCccChhhHHHHHHHHHH
Q 031540           67 SVIVFSEGYASSRWCLDELVKILEC   91 (158)
Q Consensus        67 ~IvvlS~~y~~S~wc~~El~~~~~~   91 (158)
                      .|++++   ..+.-+..|+..+...
T Consensus        81 vva~~~---~~d~Gt~~EiGyA~al  102 (165)
T 2khz_A           81 VVAEVT---QPSLGVGYELGRAVAL  102 (165)
T ss_dssp             EEEECS---SCCHHHHHHHHHHHHT
T ss_pred             EEEECC---CCCCCHHHHHHHHHHC
Confidence            999997   4567788999988763

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=82.44  E-value=9.9  Score=27.15  Aligned_cols=76  Identities=18%  Similarity=0.218  Sum_probs=49.8

Q ss_pred             cEEEe--cccCcCcccHHHHHHHHHhcCCceeeecCCc-----CCcc-------chhHHHHHHHHhcCeEEEEeecCCcc
Q 031540           12 DVFVS--FRGEDTRDNFTSHLCSALCRQNIQTFIDDQL-----NRGD-------EISESLVNAIEASAISVIVFSEGYAS   77 (158)
Q Consensus        12 dVFIS--y~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~-----~~G~-------~i~~~i~~aI~~S~~~IvvlS~~y~~   77 (158)
                      .|||+  +++.+....+...+.+.|++.| .|+...-.     ..|+       .+.+.-.+.|+.|++.|.+++   ..
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~   79 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP   79 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence            35665  3332222357799999999999 67542211     1222       255566788999999999998   55


Q ss_pred             ChhhHHHHHHHHHH
Q 031540           78 SRWCLDELVKILEC   91 (158)
Q Consensus        78 S~wc~~El~~~~~~   91 (158)
                      |.-...|+..+...
T Consensus        80 d~Gt~~EiG~A~al   93 (152)
T 4fyk_A           80 SLGVGYELGRAVAL   93 (152)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHc
Confidence            66778899988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	2e-20
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	4e-18

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (198), Expect = 2e-20
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 8   DKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAIEASAI 66
           + ++  F+S+ G D+     + L   L ++ +Q  + ++    G  I E+++  IE S  
Sbjct: 10  NLQFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYK 68

Query: 67  SVIVFSEGYASSRWCLDELVKILECK-KEYAQIVIPVFYLVDPSDARNQT 115
           S+ V S  +  S WC  EL         E +  +I +     P  +   +
Sbjct: 69  SIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSS 118

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (181), Expect = 4e-18
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 8   DKKYDVFVSFRGEDTRDNFTSHLCSAL--CRQNIQTFIDDQ-LNRGDEISESLVNAIEAS 64
           +  YD FVS+   D      + +   L       +  +  +    G  I ++++++IE S
Sbjct: 3   NICYDAFVSYSERD-AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKS 61

Query: 65  AISVIVFSEGYASSRWCLDELVKIL-ECKKEYAQIVIPVFYLVDPSDARNQTGP 117
             +V V SE +  S WC  EL         E     I +        A  Q   
Sbjct: 62  HKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFC 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.88
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.87
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	93.21
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	91.67
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	87.54
d1f8ya_	156	Nucleoside 2-deoxyribosyltransferase {Lactobacillu	85.74
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	84.97
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	83.1

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.9e-24  Score=157.21  Aligned_cols=94  Identities=24%  Similarity=0.463  Sum_probs=86.4

Q ss_pred             CccEEEecccCcCcccHH-HHHHHHHhcCCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHH
Q 031540           10 KYDVFVSFRGEDTRDNFT-SHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVK   87 (158)
Q Consensus        10 ~ydVFISy~~~D~~~~f~-~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~   87 (158)
                      +|||||||+++|.  .|| ..|...|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|+.|.||..|+..
T Consensus        12 ~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E~~~   89 (161)
T d1fyva_          12 QFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYELYF   89 (161)
T ss_dssp             CEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHHHHT
T ss_pred             eeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHHHHHH
Confidence            8999999999995  577 5799999999999999998 99999999999999999999999999999999999999999


Q ss_pred             HHHHh-hhccceeeeEEee
Q 031540           88 ILECK-KEYAQIVIPVFYL  105 (158)
Q Consensus        88 ~~~~~-~~~~~~iiPVf~~  105 (158)
                      ++++. +.+..++|||+++
T Consensus        90 a~~~~~~~~~~~lIpV~l~  108 (161)
T d1fyva_          90 AHHNLFHEGSNSLILILLE  108 (161)
T ss_dssp             TSCCCSCSSCSSEEEEESS
T ss_pred             HHHHHHHcCCCceeEEEEe
Confidence            98764 4456789999996

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.7e-24  Score=153.17  Aligned_cols=101  Identities=23%  Similarity=0.367  Sum_probs=87.4

Q ss_pred             CccEEEecccCcCcccHH-HHHHHHHhc--CCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHH
Q 031540           10 KYDVFVSFRGEDTRDNFT-SHLCSALCR--QNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDEL   85 (158)
Q Consensus        10 ~ydVFISy~~~D~~~~f~-~~L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El   85 (158)
                      .|||||||+++|.  .|| ..|...|++  .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|+.|.||..|+
T Consensus         5 ~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~~E~   82 (149)
T d1fyxa_           5 CYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYEL   82 (149)
T ss_dssp             CEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHS
T ss_pred             EEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchHHHH
Confidence            7999999999995  566 568999986  4899999988 999999999999999999999999999999999999999


Q ss_pred             HHHHHH-hhhccceeeeEEee-cCccccc
Q 031540           86 VKILEC-KKEYAQIVIPVFYL-VDPSDAR  112 (158)
Q Consensus        86 ~~~~~~-~~~~~~~iiPVf~~-v~p~dvr  112 (158)
                      ..++.. .++++.++|||+++ +...++.
T Consensus        83 ~~a~~~~~~~~~~~iIpV~l~~~~~~~~~  111 (149)
T d1fyxa_          83 DFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             CCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHcCCceEEEEEeccCchhhcc
Confidence            887654 35567899999995 4444443

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.21  E-value=0.25  Score=33.85  Aligned_cols=71  Identities=13%  Similarity=0.115  Sum_probs=53.8

Q ss_pred             cCcccHHHHHHHHHhcCCceeeecCC--cCCccchhHHHHHHHHhcCeEEEEeec--CCccChhhHHHHHHHHHH
Q 031540           21 DTRDNFTSHLCSALCRQNIQTFIDDQ--LNRGDEISESLVNAIEASAISVIVFSE--GYASSRWCLDELVKILEC   91 (158)
Q Consensus        21 D~~~~f~~~L~~~L~~~gi~~f~d~~--~~~G~~i~~~i~~aI~~S~~~IvvlS~--~y~~S~wc~~El~~~~~~   91 (158)
                      |.+..+...+...|+.+|+.++.-.+  ......|...-.+.|++|++.|.+++|  .-..+.=+..|+..+...
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~al   89 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL   89 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHC
Confidence            33346889999999999999987544  333455777778899999999999985  223455688899998764

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.67  E-value=0.27  Score=30.64  Aligned_cols=60  Identities=17%  Similarity=0.217  Sum_probs=44.3

Q ss_pred             CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHHhcCeEEEEeec
Q 031540           10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSE   73 (158)
Q Consensus        10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS~   73 (158)
                      ..+|||..-++.. ...+..|...|++.|+++-+|..   +..+...+..|-..---+++|+-+
T Consensus         3 ~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG~   62 (97)
T d1wu7a1           3 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIFGE   62 (97)
T ss_dssp             SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred             CceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC---CCcHHHHHHHHHhcCCCeEEecCC
Confidence            5689999888765 47999999999999999999764   445666677665544445555543

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=87.54  E-value=2.1  Score=29.04  Aligned_cols=89  Identities=12%  Similarity=0.101  Sum_probs=56.1

Q ss_pred             CCccEEEecccC-cCcccHHHHHHHHHhcCC--ceeeecCC--c--------CCc--------cchhHHHHHHHHhcCeE
Q 031540            9 KKYDVFVSFRGE-DTRDNFTSHLCSALCRQN--IQTFIDDQ--L--------NRG--------DEISESLVNAIEASAIS   67 (158)
Q Consensus         9 ~~ydVFISy~~~-D~~~~f~~~L~~~L~~~g--i~~f~d~~--~--------~~G--------~~i~~~i~~aI~~S~~~   67 (158)
                      ++..|||+=.-- +....+...+.+.|+++|  +.+|.-.+  .        +-+        +.+...-.++|++|++.
T Consensus         6 ~~~kIYLAgP~F~~~~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~v   85 (167)
T d1s2da_           6 PTGKIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCG   85 (167)
T ss_dssp             CCEEEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEE
T ss_pred             CCceEEEECCCCCHHHHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCEE
Confidence            456677763110 122468899999999987  56664321  1        001        12334455789999999


Q ss_pred             EEEeecCCccChhhHHHHHHHHHHhhhccceeeeE
Q 031540           68 VIVFSEGYASSRWCLDELVKILECKKEYAQIVIPV  102 (158)
Q Consensus        68 IvvlS~~y~~S~wc~~El~~~~~~~~~~~~~iiPV  102 (158)
                      |+++...... .-...|+..+...    +..|+-+
T Consensus        86 IA~ldg~~~D-~GTa~EiG~A~a~----gKPvi~~  115 (167)
T d1s2da_          86 VFLYDMDQLD-DGSAFEIGFMRAM----HKPVILV  115 (167)
T ss_dssp             EEEEESSSCC-HHHHHHHHHHHHT----TCCEEEE
T ss_pred             EEEeCCCCCC-ccHHHHHHHHHHC----CCeEEEE
Confidence            9999887765 3467799888764    3455544

>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=85.74  E-value=1.6  Score=29.58  Aligned_cols=80  Identities=14%  Similarity=0.093  Sum_probs=52.2

Q ss_pred             CCccEEEe---cccCcCcccHHHHHHHHHhcC----CceeeecCC-----cCCc------------cchhHHHHHHHHhc
Q 031540            9 KKYDVFVS---FRGEDTRDNFTSHLCSALCRQ----NIQTFIDDQ-----LNRG------------DEISESLVNAIEAS   64 (158)
Q Consensus         9 ~~ydVFIS---y~~~D~~~~f~~~L~~~L~~~----gi~~f~d~~-----~~~G------------~~i~~~i~~aI~~S   64 (158)
                      |++.|||.   |+..+  ..+...+.+.|+++    |..+|.-.+     ...+            ..|...-.++|++|
T Consensus         1 p~k~IYlAgP~F~~~q--~~~~~~~~~~L~~~~~~~~~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~a   78 (156)
T d1f8ya_           1 PKKTIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTN   78 (156)
T ss_dssp             CCBCEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTS
T ss_pred             CCceEEEECCCCCHHH--HHHHHHHHHHHHhccccCCceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHC
Confidence            45667776   33333  36889999999874    566665322     1111            12444456889999


Q ss_pred             CeEEEEeecCCccChhhHHHHHHHHHH
Q 031540           65 AISVIVFSEGYASSRWCLDELVKILEC   91 (158)
Q Consensus        65 ~~~IvvlS~~y~~S~wc~~El~~~~~~   91 (158)
                      ++.|+++...... .-+..|+..+...
T Consensus        79 D~via~ldg~~~D-~Gta~EiG~A~a~  104 (156)
T d1f8ya_          79 DIMLGVYIPDEED-VGLGMELGYALSQ  104 (156)
T ss_dssp             SEEEEECCGGGCC-HHHHHHHHHHHHT
T ss_pred             CEEEEEeCCCCCC-CCHHHHHHHHHHc
Confidence            9999999866554 4577899988764

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.97  E-value=0.97  Score=27.89  Aligned_cols=59  Identities=17%  Similarity=0.283  Sum_probs=41.0

Q ss_pred             CCccEEEecccCcCcccHHHHHHHHHhcC--CceeeecCCcCCccchhHHHHHHHHhcCeEEEEe
Q 031540            9 KKYDVFVSFRGEDTRDNFTSHLCSALCRQ--NIQTFIDDQLNRGDEISESLVNAIEASAISVIVF   71 (158)
Q Consensus         9 ~~ydVFISy~~~D~~~~f~~~L~~~L~~~--gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivvl   71 (158)
                      |..||||-.-+++. ...+-.|...|++.  |+++-+|..   +..+...+..|-+.---.++|+
T Consensus         2 p~vdv~vi~~~~~~-~~~a~~la~~LR~~~~gi~v~~~~~---~~~l~kq~k~A~~~~~~~~iii   62 (99)
T d1kmma1           2 PVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVVL   62 (99)
T ss_dssp             CSCSEEEECCSTTH-HHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEEC
T ss_pred             CCCEEEEEECCHHH-HHHHHHHHHHHHhcCCCeEEEEeCC---CCCHHHHHHHHHHhCCChhhhc
Confidence            56899998876654 46888999999876  999988763   3456666666655433344444

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.10  E-value=1.3  Score=26.97  Aligned_cols=60  Identities=22%  Similarity=0.282  Sum_probs=42.5

Q ss_pred             CCccEEEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHHhcCeEEEEee
Q 031540            9 KKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFS   72 (158)
Q Consensus         9 ~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS   72 (158)
                      +..||||.--+++. ...+..|...|++.|+++-+|..   +..+...+..|-+.---+++|+-
T Consensus         3 ~~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG   62 (95)
T d1qe0a1           3 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAKFTIVIG   62 (95)
T ss_dssp             CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecCC---CCCHHHHHHHHHhcCCCEEEEEc
Confidence            45799997756554 46889999999999999988764   44566666666654444555553