Citrus Sinensis ID: 031545

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MAAAAAAAAQWLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccEEEEcccccEEEEEEcccccEEEccccccccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEcccccEEEEEcEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHccccccc
Coil and Loop (DISEMBL)
MAAAAAAAAQWLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRslsdpdnvlqswdptlvnpctwfhitcnqdnrvtrldlgnsnlsgrlvpelgklEHLQYLELYKNniqgtipvelgnlkslisldlynnnisgkippslaklkslvfl
Flexible Loop (DISEMBL)
MAAAAAAAAQWLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNnisgkippslaklkslvfl
Low Complexity Region (SEG)
MaaaaaaaaQWLSVCITFsvsliiiiigssslvavasgNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL
Disordered region (IsUnstruct)
******AAAQWLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI*************
Disordered Region (DISOPRED)
************SVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL
Disordered Region (DISEMBL)
*********QWLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL
Disordered Region (DISPRO)
*******AAQWLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV*L
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAAAAAAAQWLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q94F62	615	BRASSINOSTEROID INSENSITI	no	no	0.803	0.206	0.692	7e-46
Q9XIC7	628	Somatic embryogenesis rec	no	no	0.778	0.195	0.674	2e-44
Q94AG2	625	Somatic embryogenesis rec	no	no	0.860	0.217	0.656	3e-44
Q9SKG5	620	Somatic embryogenesis rec	no	no	0.772	0.196	0.688	2e-42
Q8LPS5	601	Somatic embryogenesis rec	no	no	0.803	0.211	0.607	1e-38
C0LGT1	613	Probable LRR receptor-lik	no	no	0.816	0.210	0.457	2e-26
Q8VYT3	648	Probable LRR receptor-lik	no	no	0.759	0.185	0.458	6e-21
Q9LFS4	638	Protein NSP-INTERACTING K	no	no	0.759	0.188	0.433	2e-20
Q8RY65	635	Protein NSP-INTERACTING K	no	no	0.753	0.187	0.458	3e-20
Q9C9N5	685	Probable inactive leucine	no	no	0.867	0.2	0.398	6e-20

>sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2

 Score =  182 bits (462), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 88/127 (69%), Positives = 104/127 (81%)

Query: 32  LVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNS 91
           LV   SGN+EGDAL AL+ SL+DP+ VLQSWD TLV PCTWFH+TCN DN VTR+DLGN+
Sbjct: 19  LVLRVSGNAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDNSVTRVDLGNA 78

Query: 92  NLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAK 151
           NLSG+LV +LG+L +LQYLELY NNI GTIP +LGNL  L+SLDLY NN+SG IP +L +
Sbjct: 79  NLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGR 138

Query: 152 LKSLVFL 158
           LK L FL
Sbjct: 139 LKKLRFL 145

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interaction with FLS2 and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9XIC7|SERK2_ARATH Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1

 Score =  177 bits (449), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 103/123 (83%)

Query: 36  ASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSG 95
           AS N EGDAL++LR +L DP+NVLQSWDPTLVNPCTWFH+TCN +N V R+DLGN++LSG
Sbjct: 27  ASSNMEGDALHSLRANLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNADLSG 86

Query: 96  RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
           +LVP+LG+L++LQYLELY NNI G +P +LGNL +L+SLDLY N+ +G IP SL KL  L
Sbjct: 87  QLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKL 146

Query: 156 VFL 158
            FL
Sbjct: 147 RFL 149

Serine/threonine-kinase involved in brassinosteroid-dependent and -independent signaling pathways. Acts redundantly with SERK1 as a control point for sporophytic development controlling male gametophyte production.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score =  177 bits (449), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 90/137 (65%), Positives = 107/137 (78%), Gaps = 1/137 (0%)

Query: 22  LIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDN 81
           L +I++ + SL  +AS N EGDAL+ LR +L DP+NVLQSWDPTLVNPCTWFH+TCN +N
Sbjct: 11  LSLILLPNHSL-WLASANLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCNNEN 69

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            V R+DLGN+ LSG LVPELG L++LQYLELY NNI G IP  LGNL +L+SLDLY N+ 
Sbjct: 70  SVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSF 129

Query: 142 SGKIPPSLAKLKSLVFL 158
           SG IP SL KL  L FL
Sbjct: 130 SGPIPESLGKLSKLRFL 146

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SKG5|SERK4_ARATH Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2

 Score =  171 bits (433), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 101/125 (80%), Gaps = 3/125 (2%)

Query: 37  SGNSEGDALYALRRSLS--DP-DNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNL 93
           +GN+EGDAL  L+ SLS  DP +NVLQSWD TLV PCTWFH+TCN +N+VTR+DLGN+ L
Sbjct: 28  AGNAEGDALTQLKNSLSSGDPANNVLQSWDATLVTPCTWFHVTCNPENKVTRVDLGNAKL 87

Query: 94  SGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLK 153
           SG+LVPELG+L +LQYLELY NNI G IP ELG+L  L+SLDLY N+ISG IP SL KL 
Sbjct: 88  SGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLG 147

Query: 154 SLVFL 158
            L FL
Sbjct: 148 KLRFL 152

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPS5|SERK5_ARATH Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 97/130 (74%), Gaps = 3/130 (2%)

Query: 32  LVAVASGNSEGDALYALRRSLSDPD---NVLQSWDPTLVNPCTWFHITCNQDNRVTRLDL 88
            V+  +G ++ DAL ALR SLS  D   N+LQSW+ T V PC+WFH+TCN +N VTRLDL
Sbjct: 18  FVSRVTGKTQVDALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTCNTENSVTRLDL 77

Query: 89  GNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPS 148
           G++NLSG LVP+L +L +LQYLEL+ NNI G IP ELG+L  L+SLDL+ NNISG IP S
Sbjct: 78  GSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSS 137

Query: 149 LAKLKSLVFL 158
           L KL  L FL
Sbjct: 138 LGKLGKLRFL 147

Serine/threonine-kinase of unknown function.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT1|Y5129_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1

 Score =  118 bits (295), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/129 (45%), Positives = 79/129 (61%)

Query: 30  SSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLG 89
           + L +  S +++GDAL+ALR SL    N L  W+   VNPCTW  + C+  N VT L L 
Sbjct: 19  ACLCSFVSPDAQGDALFALRISLRALPNQLSDWNQNQVNPCTWSQVICDDKNFVTSLTLS 78

Query: 90  NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSL 149
           + N SG L   +G LE+L+ L L  N I G IP + GNL SL SLDL +N ++G+IP ++
Sbjct: 79  DMNFSGTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTI 138

Query: 150 AKLKSLVFL 158
             LK L FL
Sbjct: 139 GNLKKLQFL 147

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VYT3|Y4052_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g30520 OS=Arabidopsis thaliana GN=At4g30520 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 73/120 (60%)

Query: 39  NSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLV 98
           N E +AL ++R +L DP   L +WD   V+PC+W  ITC+ DN V  L   + +LSG L 
Sbjct: 35  NPEVEALISIRNNLHDPHGALNNWDEFSVDPCSWAMITCSPDNLVIGLGAPSQSLSGGLS 94

Query: 99  PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
             +G L +L+ + L  NNI G IP ELG L  L +LDL NN  SG IP S+ +L SL +L
Sbjct: 95  ESIGNLTNLRQVSLQNNNISGKIPPELGFLPKLQTLDLSNNRFSGDIPVSIDQLSSLQYL 154

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFS4|NIK1_ARATH Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 73/120 (60%)

Query: 39  NSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLV 98
           N E  AL  ++ SL DP  VL +WD   V+PC+W  +TC+ +N V  L   + NLSG L 
Sbjct: 39  NFEVQALMDIKASLHDPHGVLDNWDRDAVDPCSWTMVTCSSENFVIGLGTPSQNLSGTLS 98

Query: 99  PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           P +  L +L+ + L  NNI+G IP E+G L  L +LDL +N   G+IP S+  L+SL +L
Sbjct: 99  PSITNLTNLRIVLLQNNNIKGKIPAEIGRLTRLETLDLSDNFFHGEIPFSVGYLQSLQYL 158

Involved in defense response to geminivirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RY65|NIK2_ARATH Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 75/120 (62%), Gaps = 1/120 (0%)

Query: 39  NSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLV 98
           N E  AL  ++ SL+DP  VL +WD T V+PC+W  ITC+ D  V RL+  + NLSG L 
Sbjct: 40  NFEVVALIGIKSSLTDPHGVLMNWDDTAVDPCSWNMITCS-DGFVIRLEAPSQNLSGTLS 98

Query: 99  PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
             +G L +LQ + L  N I G IP E+G L  L +LDL  NN +G+IP +L+  K+L +L
Sbjct: 99  SSIGNLTNLQTVLLQNNYITGNIPHEIGKLMKLKTLDLSTNNFTGQIPFTLSYSKNLQYL 158

Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 1/138 (0%)

Query: 22  LIIIIIGSSSLVAVASGNSEGDALYALRRSLSDP-DNVLQSWDPTLVNPCTWFHITCNQD 80
           LI+  I +       S N +G AL + ++S+ +  D+V  +W+ +  NPC+W  +TCN D
Sbjct: 6   LILCFILTHFFAIATSLNDQGLALLSFKQSIQNQSDSVFTNWNSSDSNPCSWQGVTCNYD 65

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
            RV  + L N  LSG L P +G L  L+++ L  N+ QG +PVEL  LK L SL L  N+
Sbjct: 66  MRVVSIRLPNKRLSGSLDPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSGNS 125

Query: 141 ISGKIPPSLAKLKSLVFL 158
            SG +P  +  LKSL+ L
Sbjct: 126 FSGFVPEEIGSLKSLMTL 143

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
30385250	228	leucine-rich repeat protein [x Citrofort	0.993	0.688	0.968	8e-68
255578680	223	serine-threonine protein kinase, plant-t	0.949	0.672	0.788	6e-63
224106682	215	predicted protein [Populus trichocarpa]	0.905	0.665	0.776	8e-62
255644475	218	unknown [Glycine max]	0.930	0.674	0.753	4e-61
356501350	218	PREDICTED: somatic embryogenesis recepto	0.930	0.674	0.753	5e-61
255637944	218	unknown [Glycine max]	0.930	0.674	0.753	5e-61
359807462	218	somatic embryogenesis receptor kinase 1-	0.930	0.674	0.753	5e-61
225440217	218	PREDICTED: somatic embryogenesis recepto	0.873	0.633	0.826	4e-60
297741717	302	unnamed protein product [Vitis vinifera]	0.873	0.456	0.826	7e-60
225580057	218	leucine-rich repeat protein [Solenostemo	0.854	0.619	0.844	2e-59

>gi|30385250|gb|AAP23944.1| leucine-rich repeat protein [x Citrofortunella microcarpa]

 Score =  261 bits (666), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 153/158 (96%), Positives = 153/158 (96%), Gaps = 1/158 (0%)

Query: 1   MAAAAAAAAQWLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQ 60
           MAAAAAAAAQWLSVCITFSVSLIIII  SSSLVAV SGNSEGDALYALRRSLSDPD VLQ
Sbjct: 1   MAAAAAAAAQWLSVCITFSVSLIIIIG-SSSLVAVVSGNSEGDALYALRRSLSDPDYVLQ 59

Query: 61  SWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT 120
           SWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSG LVPELGKLEHLQYLELYKNNIQGT
Sbjct: 60  SWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGHLVPELGKLEHLQYLELYKNNIQGT 119

Query: 121 IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL
Sbjct: 120 IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 157

Source: x Citrofortunella microcarpa

Species: x Citrofortunella microcarpa

Genus: x Citrofortunella

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578680|ref|XP_002530200.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223530293|gb|EEF32190.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 123/156 (78%), Positives = 131/156 (83%), Gaps = 6/156 (3%)

Query: 4   AAAAAAQW-LSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQSW 62
           +A     W +S C+   V LI+ +      V++A  NSEGDALY LRRSLSDPDNVLQSW
Sbjct: 2   SATTRPPWNVSTCVPPLVFLILTV-----FVSLAYANSEGDALYTLRRSLSDPDNVLQSW 56

Query: 63  DPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP 122
           DPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSG LVPELGKLEHLQYLELYKNNIQG+IP
Sbjct: 57  DPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGHLVPELGKLEHLQYLELYKNNIQGSIP 116

Query: 123 VELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
            ELGNLKSLISLDLYNNNISG IPPSL KLKSLVFL
Sbjct: 117 TELGNLKSLISLDLYNNNISGSIPPSLGKLKSLVFL 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106682|ref|XP_002314247.1| predicted protein [Populus trichocarpa] gi|118487907|gb|ABK95775.1| unknown [Populus trichocarpa] gi|222850655|gb|EEE88202.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (614), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 118/152 (77%), Positives = 130/152 (85%), Gaps = 9/152 (5%)

Query: 7   AAAQWLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTL 66
           AA  WL   +T +++ I+ ++         +GNSEGDAL+ LR+SLSDPDNVLQSWDPTL
Sbjct: 2   AAQAWLWTSLTVALTFILTVV---------NGNSEGDALFTLRKSLSDPDNVLQSWDPTL 52

Query: 67  VNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELG 126
           VNPCTWFHITCNQDNRVTRLDLGNSNLSG LVPELGKLEHLQYLELYKNNIQGTIP ELG
Sbjct: 53  VNPCTWFHITCNQDNRVTRLDLGNSNLSGHLVPELGKLEHLQYLELYKNNIQGTIPSELG 112

Query: 127 NLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           +LKSLISLDLYNNNISG IPPSL +LKSLVFL
Sbjct: 113 SLKSLISLDLYNNNISGTIPPSLGRLKSLVFL 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644475|gb|ACU22741.1| unknown [Glycine max]

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 134/158 (84%), Gaps = 11/158 (6%)

Query: 1   MAAAAAAAAQWLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQ 60
           MAAA   + ++L   ++ SV+L        +L  +A+ NSEGDALY L+RSLSDPDNVLQ
Sbjct: 1   MAAATRTSLRFL---LSVSVTL--------TLAHLAASNSEGDALYTLKRSLSDPDNVLQ 49

Query: 61  SWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT 120
           SWDPTLV+PCTWFH+TCNQDNRVTR+DLGNSNLSG LVPELGKLEHLQYLELYKNNIQGT
Sbjct: 50  SWDPTLVSPCTWFHVTCNQDNRVTRVDLGNSNLSGHLVPELGKLEHLQYLELYKNNIQGT 109

Query: 121 IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           IP ELGNLKSL+SLDLYNNNISG IPPSL KLK+LVFL
Sbjct: 110 IPPELGNLKSLVSLDLYNNNISGTIPPSLGKLKNLVFL 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501350|ref|XP_003519488.1| PREDICTED: somatic embryogenesis receptor kinase 1-like [Glycine max]

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 135/158 (85%), Gaps = 11/158 (6%)

Query: 1   MAAAAAAAAQWLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQ 60
           MAAA   + ++L   ++ SV+L        +L+ +A+ NSEGDALY L+RSLSDPDNVLQ
Sbjct: 1   MAAATPTSLRFL---LSVSVTL--------TLLNLAASNSEGDALYTLKRSLSDPDNVLQ 49

Query: 61  SWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT 120
           SWDPTLV+PCTWFH+TCNQDNRVTR+DLGNSNLSG LVPELGKLEHLQYLELYKNNIQGT
Sbjct: 50  SWDPTLVSPCTWFHVTCNQDNRVTRVDLGNSNLSGHLVPELGKLEHLQYLELYKNNIQGT 109

Query: 121 IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           IP ELGNLKSL+SLDLYNNNISG IPPSL KLK+LVFL
Sbjct: 110 IPPELGNLKSLVSLDLYNNNISGTIPPSLGKLKNLVFL 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637944|gb|ACU19288.1| unknown [Glycine max]

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 135/158 (85%), Gaps = 11/158 (6%)

Query: 1   MAAAAAAAAQWLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQ 60
           MAAA   + ++L   ++ SV+L        +L+ +A+ NSEGDALY L+RSLSDPDNVLQ
Sbjct: 1   MAAATPTSLRFL---LSVSVTL--------TLLNLAASNSEGDALYTLKRSLSDPDNVLQ 49

Query: 61  SWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT 120
           SWDPTLV+PCTWFH+TCNQDNRVTR+DLGNSNLSG LVPELGKLEHLQYLELYKNNIQGT
Sbjct: 50  SWDPTLVSPCTWFHVTCNQDNRVTRVDLGNSNLSGHLVPELGKLEHLQYLELYKNNIQGT 109

Query: 121 IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           IP ELGNLKSL+SLDLYNNNISG IPPSL KLK+LVFL
Sbjct: 110 IPPELGNLKSLVSLDLYNNNISGTIPPSLGKLKNLVFL 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807462|ref|NP_001241394.1| somatic embryogenesis receptor kinase 1-like precursor [Glycine max] gi|223452524|gb|ACM89589.1| leucine-rich repeat protein [Glycine max]

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 134/158 (84%), Gaps = 11/158 (6%)

Query: 1   MAAAAAAAAQWLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQ 60
           MAAA   + ++L   ++ SV+L        +L  +A+ NSEGDALY L+RSLSDPDNVLQ
Sbjct: 1   MAAATRTSLRFL---LSVSVTL--------TLAHLAASNSEGDALYTLKRSLSDPDNVLQ 49

Query: 61  SWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT 120
           SWDPTLV+PCTWFH+TCNQDNRVTR+DLGNSNLSG LVPELGKLEHLQYLELYKNNIQGT
Sbjct: 50  SWDPTLVSPCTWFHVTCNQDNRVTRVDLGNSNLSGHLVPELGKLEHLQYLELYKNNIQGT 109

Query: 121 IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           IP ELGNLKSL+SLDLYNNNISG IPPSL KLK+LVFL
Sbjct: 110 IPPELGNLKSLVSLDLYNNNISGTIPPSLGKLKNLVFL 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440217|ref|XP_002283683.1| PREDICTED: somatic embryogenesis receptor kinase 1-like [Vitis vinifera]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 114/138 (82%), Positives = 123/138 (89%)

Query: 21  SLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQD 80
           +L+ + + S   V +  GNSEGDALY LRRSLSDPDNVLQSWDP LVNPCTWFHITCNQD
Sbjct: 10  ALVALTVLSVMRVGLVRGNSEGDALYTLRRSLSDPDNVLQSWDPNLVNPCTWFHITCNQD 69

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
            RVTR+DLG+SNLSG LVPELGKLEHLQYLELYKNNIQGTIPVELGNLK+LISLDLYNNN
Sbjct: 70  GRVTRVDLGSSNLSGHLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKNLISLDLYNNN 129

Query: 141 ISGKIPPSLAKLKSLVFL 158
           ISG IPP+L KLKSLVFL
Sbjct: 130 ISGVIPPALGKLKSLVFL 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741717|emb|CBI32849.3| unnamed protein product [Vitis vinifera]

 Score =  234 bits (598), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 114/138 (82%), Positives = 123/138 (89%)

Query: 21  SLIIIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQD 80
           +L+ + + S   V +  GNSEGDALY LRRSLSDPDNVLQSWDP LVNPCTWFHITCNQD
Sbjct: 94  ALVALTVLSVMRVGLVRGNSEGDALYTLRRSLSDPDNVLQSWDPNLVNPCTWFHITCNQD 153

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
            RVTR+DLG+SNLSG LVPELGKLEHLQYLELYKNNIQGTIPVELGNLK+LISLDLYNNN
Sbjct: 154 GRVTRVDLGSSNLSGHLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKNLISLDLYNNN 213

Query: 141 ISGKIPPSLAKLKSLVFL 158
           ISG IPP+L KLKSLVFL
Sbjct: 214 ISGVIPPALGKLKSLVFL 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225580057|gb|ACN94266.1| leucine-rich repeat protein [Solenostemon scutellarioides]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 122/135 (90%)

Query: 24  IIIIGSSSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRV 83
           + ++ SS  +  ASGNSEGDALYALRRSL+DPD+VLQSWDP LVNPCTWFHITCNQDNRV
Sbjct: 13  LTMVSSSLHLQKASGNSEGDALYALRRSLTDPDSVLQSWDPNLVNPCTWFHITCNQDNRV 72

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           TR+DLGNSNLSG LVPELGKLE+LQYLELYKNNIQG IP ELGNLKSLISLDLYNNNISG
Sbjct: 73  TRVDLGNSNLSGHLVPELGKLEYLQYLELYKNNIQGGIPGELGNLKSLISLDLYNNNISG 132

Query: 144 KIPPSLAKLKSLVFL 158
            IPPSL  LKSLVFL
Sbjct: 133 TIPPSLGNLKSLVFL 147

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2178968	218	AT5G21090 [Arabidopsis thalian	0.759	0.550	0.883	1.8e-55
TAIR|locus:2026097	628	SERK2 "somatic embryogenesis r	0.759	0.191	0.675	5.2e-42
TAIR|locus:2013021	625	SERK1 "somatic embryogenesis r	0.759	0.192	0.7	6.6e-42
TAIR|locus:2040461	620	SERK4 "somatic embryogenesis r	0.759	0.193	0.691	5.1e-40
TAIR|locus:2101064	248	AT3G43740 [Arabidopsis thalian	0.759	0.483	0.634	1.7e-36
TAIR|locus:2040471	601	SERK5 "somatic embryogenesis r	0.734	0.193	0.647	1.6e-35
TAIR|locus:2145407	613	AT5G10290 [Arabidopsis thalian	0.759	0.195	0.475	3.8e-23
TAIR|locus:2036636	632	NIK3 "NSP-interacting kinase 3	0.753	0.188	0.458	6.4e-22
TAIR|locus:2118811	648	SARK "SENESCENCE-ASSOCIATED RE	0.759	0.185	0.458	1.4e-21
TAIR|locus:4515102753	598	AT1G73066 [Arabidopsis thalian	0.759	0.200	0.414	1.4e-20

TAIR|locus:2178968 AT5G21090 [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 106/120 (88%), Positives = 114/120 (95%)

Query:    39 NSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLV 98
             NSEGDALYALRRSL+DPD+VLQSWDPTLVNPCTWFH+TCNQDNRVTR+DLGNSNLSG L 
Sbjct:    28 NSEGDALYALRRSLTDPDHVLQSWDPTLVNPCTWFHVTCNQDNRVTRVDLGNSNLSGHLA 87

Query:    99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
             PELGKLEHLQYLELYKNNIQGTIP ELGNLK+LISLDLYNNN++G +P SL KLKSLVFL
Sbjct:    88 PELGKLEHLQYLELYKNNIQGTIPSELGNLKNLISLDLYNNNLTGIVPTSLGKLKSLVFL 147

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2026097 SERK2 "somatic embryogenesis receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 81/120 (67%), Positives = 101/120 (84%)

Query:    39 NSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLV 98
             N EGDAL++LR +L DP+NVLQSWDPTLVNPCTWFH+TCN +N V R+DLGN++LSG+LV
Sbjct:    30 NMEGDALHSLRANLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNADLSGQLV 89

Query:    99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
             P+LG+L++LQYLELY NNI G +P +LGNL +L+SLDLY N+ +G IP SL KL  L FL
Sbjct:    90 PQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFL 149

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IGI;IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

TAIR|locus:2013021 SERK1 "somatic embryogenesis receptor-like kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 84/120 (70%), Positives = 96/120 (80%)

Query:    39 NSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLV 98
             N EGDAL+ LR +L DP+NVLQSWDPTLVNPCTWFH+TCN +N V R+DLGN+ LSG LV
Sbjct:    27 NLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLV 86

Query:    99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
             PELG L++LQYLELY NNI G IP  LGNL +L+SLDLY N+ SG IP SL KL  L FL
Sbjct:    87 PELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFL 146

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=TAS

GO:0009556 "microsporogenesis" evidence=IGI;IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI;IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0007030 "Golgi organization" evidence=IGI

GO:0010227 "floral organ abscission" evidence=IGI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2040461 SERK4 "somatic embryogenesis receptor-like kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 5.1e-40, P = 5.1e-40
 Identities = 85/123 (69%), Positives = 99/123 (80%)

Query:    39 NSEGDALYALRRSLS--DP-DNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSG 95
             N+EGDAL  L+ SLS  DP +NVLQSWD TLV PCTWFH+TCN +N+VTR+DLGN+ LSG
Sbjct:    30 NAEGDALTQLKNSLSSGDPANNVLQSWDATLVTPCTWFHVTCNPENKVTRVDLGNAKLSG 89

Query:    96 RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
             +LVPELG+L +LQYLELY NNI G IP ELG+L  L+SLDLY N+ISG IP SL KL  L
Sbjct:    90 KLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKL 149

Query:   156 VFL 158
              FL
Sbjct:   150 RFL 152

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0008219 "cell death" evidence=IGI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0010150 "leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2101064 AT3G43740 [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 80/126 (63%), Positives = 92/126 (73%)

Query:    39 NSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLV 98
             NSEGDAL+ALRRSLSDPDNV+QSWDPTLVNPCTWFH+TCNQ ++VTRLDLGNSNLSG LV
Sbjct:    28 NSEGDALHALRRSLSDPDNVVQSWDPTLVNPCTWFHVTCNQHHQVTRLDLGNSNLSGHLV 87

Query:    99 PELGKLEHLQYL----ELYKNNIQGTIPVELGNLKSLISL--DLYNNNISGKIPPSLAKL 152
             PELGKLEHLQYL     L   +   T  + + ++        +LY N I G IP  L  L
Sbjct:    88 PELGKLEHLQYLYGIITLLPFDYLKTFTLSVTHITFCFESYSELYKNEIQGTIPSELGNL 147

Query:   153 KSLVFL 158
             KSL+ L
Sbjct:   148 KSLISL 153

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040471 SERK5 "somatic embryogenesis receptor-like kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 1.6e-35, P = 1.6e-35
 Identities = 77/119 (64%), Positives = 91/119 (76%)

Query:    43 DALYALRRSLSDPD---NVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVP 99
             DAL ALR SLS  D   N+LQSW+ T V PC+WFH+TCN +N VTRLDLG++NLSG LVP
Sbjct:    29 DALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTCNTENSVTRLDLGSANLSGELVP 88

Query:   100 ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
             +L +L +LQYLEL+ NNI G IP ELG+L  L+SLDL+ NNISG IP SL KL  L FL
Sbjct:    89 QLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRFL 147

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

TAIR|locus:2145407 AT5G10290 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 57/120 (47%), Positives = 75/120 (62%)

Query:    39 NSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLV 98
             +++GDAL+ALR SL    N L  W+   VNPCTW  + C+  N VT L L + N SG L 
Sbjct:    28 DAQGDALFALRISLRALPNQLSDWNQNQVNPCTWSQVICDDKNFVTSLTLSDMNFSGTLS 87

Query:    99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
               +G LE+L+ L L  N I G IP + GNL SL SLDL +N ++G+IP ++  LK L FL
Sbjct:    88 SRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFL 147

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2036636 NIK3 "NSP-interacting kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 6.4e-22, P = 6.4e-22
 Identities = 55/120 (45%), Positives = 78/120 (65%)

Query:    39 NSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLV 98
             N E  AL A++  L+DP  VL++WD   V+PC+W  ++C  D  V+ LDL + +LSG L 
Sbjct:    33 NYEVTALVAVKNELNDPYKVLENWDVNSVDPCSWRMVSCT-DGYVSSLDLPSQSLSGTLS 91

Query:    99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
             P +G L +LQ + L  N I G IP  +G L+ L SLDL NN+ +G+IP SL +LK+L +L
Sbjct:    92 PRIGNLTYLQSVVLQNNAITGPIPETIGRLEKLQSLDLSNNSFTGEIPASLGELKNLNYL 151

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2118811 SARK "SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 55/120 (45%), Positives = 73/120 (60%)

Query:    39 NSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLV 98
             N E +AL ++R +L DP   L +WD   V+PC+W  ITC+ DN V  L   + +LSG L 
Sbjct:    35 NPEVEALISIRNNLHDPHGALNNWDEFSVDPCSWAMITCSPDNLVIGLGAPSQSLSGGLS 94

Query:    99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
               +G L +L+ + L  NNI G IP ELG L  L +LDL NN  SG IP S+ +L SL +L
Sbjct:    95 ESIGNLTNLRQVSLQNNNISGKIPPELGFLPKLQTLDLSNNRFSGDIPVSIDQLSSLQYL 154

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010150 "leaf senescence" evidence=IMP

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:4515102753 AT1G73066 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 51/123 (41%), Positives = 74/123 (60%)

Query:    39 NSEGDALYALRRSLSD-PDNVLQSW--DPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSG 95
             NS+G  L +LR+ L   P  +  +W  + +   PC WF I C+   +VT L+   S +SG
Sbjct:    28 NSDGLTLLSLRKHLDKVPPELTSTWKTNASEATPCNWFGIICDDSKKVTSLNFTGSGVSG 87

Query:    96 RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
             +L PE+G+L+ L+ L++  NN  G IP  LGN  SL+ +DL  N+ SGK+P +L  LKSL
Sbjct:    88 QLGPEIGQLKSLEILDMSSNNFSGIIPSSLGNCSSLVYIDLSENSFSGKVPDTLGSLKSL 147

Query:   156 VFL 158
               L
Sbjct:   148 ADL 150

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-11
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 5e-16
 Identities = 44/120 (36%), Positives = 60/120 (50%), Gaps = 5/120 (4%)

Query: 44  ALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTR-----LDLGNSNLSGRLV 98
           AL  L+ SL  P     + DP +     W    C  D+   +     L L N  L G + 
Sbjct: 376 ALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP 435

Query: 99  PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
            ++ KL HLQ + L  N+I+G IP  LG++ SL  LDL  N+ +G IP SL +L SL  L
Sbjct: 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.6 bits (178), Expect = 1e-15
 Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 2/107 (1%)

Query: 41  EGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPE 100
           E + L + + S++DP   L +W+ +  + C W  ITCN  +RV  +DL   N+SG++   
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNSS-ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSA 88

Query: 101 LGKLEHLQYLELYKNNIQGTIPVELGNL-KSLISLDLYNNNISGKIP 146
           + +L ++Q + L  N + G IP ++     SL  L+L NNN +G IP
Sbjct: 89  IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP 135

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.0 bits (174), Expect = 4e-15
 Identities = 34/73 (46%), Positives = 52/73 (71%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
           LDL  +NL+G +   LG L++LQYL LY+N + G IP  + +L+ LISLDL +N++SG+I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 146 PPSLAKLKSLVFL 158
           P  + +L++L  L
Sbjct: 301 PELVIQLQNLEIL 313

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.0 bits (166), Expect = 5e-14
 Identities = 36/71 (50%), Positives = 47/71 (66%)

Query: 88  LGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP 147
           LG +NLSG +  E+G L  L +L+L  NN+ G IP  LGNLK+L  L LY N +SG IPP
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 148 SLAKLKSLVFL 158
           S+  L+ L+ L
Sbjct: 279 SIFSLQKLISL 289

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 33/73 (45%), Positives = 49/73 (67%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
           L L ++ L G++  ELG+++ L+++ L  NN+ G IP E+G L SL  LDL  NN++G I
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 146 PPSLAKLKSLVFL 158
           P SL  LK+L +L
Sbjct: 253 PSSLGNLKNLQYL 265

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.1 bits (143), Expect = 6e-11
 Identities = 31/75 (41%), Positives = 46/75 (61%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
            R+  LDL  +  SG +  +LG L  L  L+L +N + G IP EL + K L+SLDL +N 
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 141 ISGKIPPSLAKLKSL 155
           +SG+IP S +++  L
Sbjct: 535 LSGQIPASFSEMPVL 549

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 31/70 (44%), Positives = 42/70 (60%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
           LDLG + L G++   L  L  L++L L  N + G IP ELG +KSL  + L  NN+SG+I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 146 PPSLAKLKSL 155
           P  +  L SL
Sbjct: 229 PYEIGGLTSL 238

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 52.3 bits (126), Expect = 3e-10
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 39 NSEGDALYALRRSL-SDPDNVLQSWDPTLVNPCTWFHITCN 78
          N + DAL A + SL  DP   L SW+P+  +PC+W  +TC+
Sbjct: 2  NDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 86  LDLGNSNLSGRLVPEL-GKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGK 144
           LDL +++LSG  +PEL  +L++L+ L L+ NN  G IPV L +L  L  L L++N  SG+
Sbjct: 289 LDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 145 IPPSLAKLKSLVFL 158
           IP +L K  +L  L
Sbjct: 348 IPKNLGKHNNLTVL 361

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 30/70 (42%), Positives = 42/70 (60%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
           LDL N+ LSG +  ++G    L+ L+L  N + G IP  L NL SL  L L +N + G+I
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 146 PPSLAKLKSL 155
           P  L ++KSL
Sbjct: 205 PRELGQMKSL 214

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
           N +T LDL  +NL+G +   L    +L  L L+ N+++G IP  LG  +SL  + L +N+
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415

Query: 141 ISGKIPPSLAKLKSLVFL 158
            SG++P    KL  + FL
Sbjct: 416 FSGELPSEFTKLPLVYFL 433

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 27/71 (38%), Positives = 38/71 (53%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
           L L  + LSG +  EL   + L  L+L  N + G IP     +  L  LDL  N +SG+I
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 146 PPSLAKLKSLV 156
           P +L  ++SLV
Sbjct: 564 PKNLGNVESLV 574

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 8e-09
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
           L L  +   G L P+    + L+ L+L +N   G +P +LG+L  L+ L L  N +SG+I
Sbjct: 457 LSLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Query: 146 PPSLAKLKSLVFL 158
           P  L+  K LV L
Sbjct: 516 PDELSSCKKLVSL 528

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 26/64 (40%), Positives = 37/64 (57%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
           L L ++N +G++   L  L  LQ L+L+ N   G IP  LG   +L  LDL  NN++G+I
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Query: 146 PPSL 149
           P  L
Sbjct: 373 PEGL 376

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 28/74 (37%), Positives = 43/74 (58%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
           R+  L L ++  SG +   LGK  +L  L+L  NN+ G IP  L +  +L  L L++N++
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392

Query: 142 SGKIPPSLAKLKSL 155
            G+IP SL   +SL
Sbjct: 393 EGEIPKSLGACRSL 406

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 24/64 (37%), Positives = 41/64 (64%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
           ++L  +++ G + P LG +  L+ L+L  N+  G+IP  LG L SL  L+L  N++SG++
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 146 PPSL 149
           P +L
Sbjct: 507 PAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 23/67 (34%), Positives = 43/67 (64%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
           LDL ++ LSG++     ++  L  L+L +N + G IP  LGN++SL+ +++ +N++ G +
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587

Query: 146 PPSLAKL 152
           P + A L
Sbjct: 588 PSTGAFL 594

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query: 85  RLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGK 144
           R+ L +++ SG L  E  KL  + +L++  NN+QG I     ++ SL  L L  N   G 
Sbjct: 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467

Query: 145 IPPS 148
           +P S
Sbjct: 468 LPDS 471

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 9e-05
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 82  RVTRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
            +  LDL N+ L+   +P+     L +L+ L+L  NN+    P     L SL SLDL  N
Sbjct: 1   NLKSLDLSNNRLTV--IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 140 NI 141
           N+
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 76  TCNQDNRVTRLDLGNSNLSGRLVPELGKL-EHLQYLELYKNNIQGTIPVELGNLKSLISL 134
              +   +T LDL N+N++  + P +G L  +L+ L+L  N I+ ++P  L NL +L +L
Sbjct: 111 ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL 168

Query: 135 DLYNNNISGKIPPSLAKLKSLVFL 158
           DL  N++S  +P  L+ L +L  L
Sbjct: 169 DLSFNDLS-DLPKLLSNLSNLNNL 191

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 106 HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           +L+ L+L  N +          L +L  LDL  NN++   P + + L SL  L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSL 53

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.0 bits (79), Expect = 0.002
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 106 HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
           +L+ L+L  N I   +P  L NL +L +LDL  N I+
Sbjct: 2   NLETLDLSNNQIT-DLP-PLSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.7
PLN03150	623	hypothetical protein; Provisional	99.67
PLN03150	623	hypothetical protein; Provisional	99.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.98
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.95
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.57
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.56
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.37
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.31
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.15
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.01
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.84
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.8
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.72
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.7
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.68
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.67
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.66
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.58
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.51
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.44
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.44
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.32
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.31
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.31
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.27
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.95
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.62
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.48
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.81
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.76
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.7
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.63
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.7
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.63
smart00370	26	LRR Leucine-rich repeats, outliers.	94.63
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.6
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.22
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.62
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.34
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.09
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.77
PRK15386	426	type III secretion protein GogB; Provisional	90.7
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.62
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	89.48
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	88.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	87.29
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.27
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	83.93
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	83.21
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.1
PRK15386	426	type III secretion protein GogB; Provisional	81.87
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	81.82
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	80.39

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.70  E-value=1.5e-16  Score=138.28  Aligned_cols=108  Identities=34%  Similarity=0.640  Sum_probs=89.1

Q ss_pred             CchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCcc
Q 031545           38 GNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNI  117 (158)
Q Consensus        38 ~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~~~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  117 (158)
                      .++|..+|+.||..+.+|.+.+.+|+.. .++|.|.||.|+..++++.|++++|++.|.+++.+..+++|+.|++++|++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~  105 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSS-ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL  105 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence            3478999999999998787778899754 689999999998878999999999999999999999999999999999999


Q ss_pred             CCCCCcccc-CCCCCCEEecccCcccccCC
Q 031545          118 QGTIPVELG-NLKSLISLDLYNNNISGKIP  146 (158)
Q Consensus       118 ~g~~p~~~~-~l~~L~~L~Ls~N~l~g~~P  146 (158)
                      .|.+|..+. .+++|++|++++|.++|.+|
T Consensus       106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p  135 (968)
T PLN00113        106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIP  135 (968)
T ss_pred             CCcCChHHhccCCCCCEEECcCCccccccC
Confidence            888887654 66666666666666554443

>PLN03150 hypothetical protein; Provisional

Probab=99.67  E-value=5.2e-16  Score=129.57  Aligned_cols=122  Identities=36%  Similarity=0.509  Sum_probs=99.4

Q ss_pred             hcCCchHHHHHHHHHHhCCCCCCCCCCCCCCCCC--CCcccceeeCCC-----CCEEEEEcCCCCCCccchhhhcCCCCC
Q 031545           35 VASGNSEGDALYALRRSLSDPDNVLQSWDPTLVN--PCTWFHITCNQD-----NRVTRLDLGNSNLSGRLVPELGKLEHL  107 (158)
Q Consensus        35 ~~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~--~c~~~gv~c~~~-----~~l~~L~l~~n~l~~~~p~~~~~l~~L  107 (158)
                      ....+.|..+|..+|..+..+..  .+|+...+.  .|.|.||.|...     ..++.|+|++|++.|.+|+.+..+++|
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L  444 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHL  444 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence            34566899999999998865532  379743221  127999999531     248899999999999999999999999


Q ss_pred             CEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545          108 QYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus       108 ~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      +.|++++|.+.|.+|..++.+++|+.|+|++|.++|.+|+.++++++|++|
T Consensus       445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            999999999999999999999999999999999999999999988888764

>PLN03150 hypothetical protein; Provisional

Probab=99.04  E-value=3.1e-10  Score=95.17  Aligned_cols=72  Identities=33%  Similarity=0.649  Sum_probs=68.4

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL  152 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l  152 (158)
                      .+++.|+|++|.+.|.+|+.+..+++|+.|++++|+++|.+|+.++++++|++|+|++|.++|.+|..++.+
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~  513 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR  513 (623)
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence            578999999999999999999999999999999999999999999999999999999999999999987653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.98  E-value=3.8e-10  Score=66.54  Aligned_cols=60  Identities=35%  Similarity=0.484  Sum_probs=53.9

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI  141 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l  141 (158)
                      +++.|++++|.+....+..|..+++|+++++++|.+....|..|..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999999966667888999999999999999977777899999999999999975

...

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.95  E-value=8.2e-10  Score=96.53  Aligned_cols=76  Identities=36%  Similarity=0.594  Sum_probs=51.6

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+.+|+.+..+++|+.|++++|.++|.+|..+..+++|+.|++++|.++|.+|..+.++++|++
T Consensus       500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  575 (968)
T PLN00113        500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ  575 (968)
T ss_pred             ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence            4556666666666666666666667777777777777667776777777777777777777777776666666554

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.77  E-value=1.3e-08  Score=55.83  Aligned_cols=40  Identities=45%  Similarity=1.061  Sum_probs=30.6

Q ss_pred             chHHHHHHHHHHhCC-CCCCCCCCCCCCC-CCCCcccceeeC
Q 031545           39 NSEGDALYALRRSLS-DPDNVLQSWDPTL-VNPCTWFHITCN   78 (158)
Q Consensus        39 ~~~~~~l~~~~~~~~-~~~~~l~~w~~~~-~~~c~~~gv~c~   78 (158)
                      ++|.++|++||..+. ++.+.+.+|+... .++|+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            478999999999998 4668899999874 799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.60  E-value=6.7e-09  Score=73.42  Aligned_cols=58  Identities=28%  Similarity=0.473  Sum_probs=40.0

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI  141 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l  141 (158)
                      +++.|++.+|++. ..|..+..+++|+.|+++.|++. .+|..|+.++.|+.|||..|++
T Consensus        57 nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl  114 (264)
T KOG0617|consen   57 NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNL  114 (264)
T ss_pred             hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccc
Confidence            4556677777776 66777777777777777777776 6777777777777666655444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.57  E-value=5.5e-09  Score=73.87  Aligned_cols=76  Identities=26%  Similarity=0.492  Sum_probs=70.2

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ...++.|.++.|.++ .+|+.+..+.+|+.|++.+|++. .+|..++.++.|+.|+++-|++. .+|..||.++.|.+|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            457899999999999 88999999999999999999999 89999999999999999999999 899999999887654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.56  E-value=2.5e-08  Score=58.64  Aligned_cols=54  Identities=33%  Similarity=0.527  Sum_probs=46.8

Q ss_pred             CCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545          105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus       105 ~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ++|+.+++++|++....+..|..+++|++|++++|.++...|..+.++++|++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L   54 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYL   54 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEE
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEE
Confidence            478999999999996555789999999999999999997666789999998764

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.52  E-value=2e-08  Score=78.65  Aligned_cols=83  Identities=30%  Similarity=0.426  Sum_probs=69.0

Q ss_pred             cceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEeccc-Ccc
Q 031545           73 FHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN-NNI  141 (158)
Q Consensus        73 ~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~-N~l  141 (158)
                      ..|+|...          ...++|+|+.|+|+...+..|..+++|+.+|+++|.|+-.-|++|.++.+|..|-+-+ |++
T Consensus        49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            34778643          3789999999999977778899999999999999999988999999999988876655 899


Q ss_pred             cccCCc-cccCCCCCC
Q 031545          142 SGKIPP-SLAKLKSLV  156 (158)
Q Consensus       142 ~g~~P~-~l~~l~~L~  156 (158)
                      + .+|. .|++|.+|+
T Consensus       129 ~-~l~k~~F~gL~slq  143 (498)
T KOG4237|consen  129 T-DLPKGAFGGLSSLQ  143 (498)
T ss_pred             h-hhhhhHhhhHHHHH
Confidence            8 6675 577777664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.37  E-value=4e-07  Score=50.05  Aligned_cols=36  Identities=47%  Similarity=0.658  Sum_probs=24.6

Q ss_pred             CCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545          106 HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus       106 ~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      +|+.|++++|+++ .+|..++++++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5677777777777 56666777777777777777766

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.31  E-value=2e-07  Score=73.50  Aligned_cols=74  Identities=41%  Similarity=0.629  Sum_probs=55.2

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCC------------------------ccccCCCCCCEEecc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP------------------------VELGNLKSLISLDLY  137 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p------------------------~~~~~l~~L~~L~Ls  137 (158)
                      +++-|++++|.+. .+|.+++.+..|+.++++.|+|. .+|                        +.+.++++|..|||.
T Consensus       436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~  513 (565)
T KOG0472|consen  436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ  513 (565)
T ss_pred             cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence            5667777777776 67777777777777777777554 222                        336677888888888


Q ss_pred             cCcccccCCccccCCCCCCCC
Q 031545          138 NNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus       138 ~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      +|++. .+|+.+|++++|++|
T Consensus       514 nNdlq-~IPp~LgnmtnL~hL  533 (565)
T KOG0472|consen  514 NNDLQ-QIPPILGNMTNLRHL  533 (565)
T ss_pred             CCchh-hCChhhccccceeEE
Confidence            88888 788888888888764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.20  E-value=1.7e-07  Score=73.95  Aligned_cols=72  Identities=39%  Similarity=0.563  Sum_probs=59.0

Q ss_pred             EEEEEcCCCCCCccchhhhc-CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           83 VTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        83 l~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ++++++..|.+. .+|.+.. .+.++..||+..|++. +.|+.+.-+++|++||+|+|.++ .+|..++++ +|+.|
T Consensus       230 L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L  302 (565)
T KOG0472|consen  230 LKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFL  302 (565)
T ss_pred             HHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeeh
Confidence            445566666666 5566655 7999999999999999 89999999999999999999999 788999998 66543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.15  E-value=1.8e-06  Score=61.50  Aligned_cols=58  Identities=40%  Similarity=0.521  Sum_probs=18.5

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccc-cCCCCCCEEecccCccc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNIS  142 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~-~~l~~L~~L~Ls~N~l~  142 (158)
                      +++.|++++|.++ .+. .+..++.|+.|++++|+++ .+++.+ ..+++|+.|++++|.+.
T Consensus        43 ~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~  101 (175)
T PF14580_consen   43 KLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKIS  101 (175)
T ss_dssp             T--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---
T ss_pred             CCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCC
Confidence            4666666666666 222 3555666666666666666 343333 24666666666666665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=3.8e-07  Score=62.28  Aligned_cols=73  Identities=25%  Similarity=0.376  Sum_probs=59.7

Q ss_pred             CCEEEEEcCCCCCCccchhhhcC-CCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGK-LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~-l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      -+++.++|++|.++ .+|+.|.. ++.++.+++++|.++ .+|..+..++.|+.+++..|.+. ..|..+..|.+|.
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD  126 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence            46888999999998 55665554 568899999999999 78999999999999999999998 7777776665543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.05  E-value=3.9e-07  Score=75.65  Aligned_cols=72  Identities=29%  Similarity=0.445  Sum_probs=46.6

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      ++..+|++.|++. .+|+.+-++++|+.|++++|+++ ++.-..+...+|+.|++|.|.++ .+|..+..+++|+
T Consensus       223 NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  223 NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             hhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence            4566777777776 67777777777777777777766 44444455556666666666666 5666665555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.04  E-value=2.2e-06  Score=61.02  Aligned_cols=71  Identities=35%  Similarity=0.527  Sum_probs=22.7

Q ss_pred             CEEEEEcCCCCCCccchhhhc-CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccc-cCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSL-AKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l-~~l~~L~~  157 (158)
                      ++++|+|++|.|. .+ +.+. .+.+|+.|++++|.+. .++ .+..+++|+.|++++|.++ .+++.+ ..+++|+.
T Consensus        20 ~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE   92 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence            5789999999998 33 3455 5789999999999999 454 5888999999999999999 565444 34666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=6.7e-06  Score=45.12  Aligned_cols=36  Identities=39%  Similarity=0.620  Sum_probs=31.7

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQ  118 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  118 (158)
                      +++.|++++|+++ .+|+.+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5789999999999 67888999999999999999998

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.01  E-value=1.1e-06  Score=72.24  Aligned_cols=75  Identities=27%  Similarity=0.182  Sum_probs=57.5

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      .++.|+|+.|+++.--...+.++++|+.|+++.|.+....++.+...++|++|+|++|+++.--++.+..|++|+
T Consensus       270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence            577888888888765566777888888888888888877788888888888888888888844444565555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.92  E-value=4.5e-06  Score=72.64  Aligned_cols=76  Identities=30%  Similarity=0.427  Sum_probs=46.2

Q ss_pred             CEEEEEcCCCC--CCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           82 RVTRLDLGNSN--LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        82 ~l~~L~l~~n~--l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+++|-+.+|.  +.......|..++.|+.||+++|.-.+.+|+.++.+-+|++|++++..++ .+|..+++|.+|.+|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            45566666664  33222333555666677777666655566666666666666666666666 666666666655543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.91  E-value=2.5e-06  Score=71.06  Aligned_cols=74  Identities=35%  Similarity=0.484  Sum_probs=48.3

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCcc-ccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      ..++.|||+.|++. .+|..+..-.++-.|++++|++. .||.. |-++..|-.||||+|++. .+|+.+..+..|++
T Consensus       103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt  177 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQT  177 (1255)
T ss_pred             ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhh
Confidence            34666777777766 66666666666677777777766 45543 456666677777777776 66666666655554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.89  E-value=3.6e-06  Score=66.30  Aligned_cols=78  Identities=24%  Similarity=0.270  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++++|++++|.+++.-+..|..+.+++.|.+..|++.-.-...|.++..|+.|+|.+|+++-.-|..|..+.+|..
T Consensus       273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~  350 (498)
T KOG4237|consen  273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST  350 (498)
T ss_pred             cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence            357899999999999888888999999999999999988555556888999999999999999888888887777654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.84  E-value=3.9e-06  Score=64.31  Aligned_cols=62  Identities=27%  Similarity=0.353  Sum_probs=50.2

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP  147 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~  147 (158)
                      .++++|+++|.|+ .+.++..-.+.++.|++++|.+. .+. ++..+++|+.||||+|.++ ++-+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~G  346 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVG  346 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhh
Confidence            4678899999998 67777777889999999999988 443 3788899999999999887 4433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.80  E-value=1e-06  Score=75.45  Aligned_cols=74  Identities=31%  Similarity=0.420  Sum_probs=43.5

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|+|++|.+.......+.++..|+.|++++|+++ .+|..+..++.|++|...+|.+. .+| .+..++.|++
T Consensus       383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence            35666666666665333344555666666666666666 56666666666666666666666 555 4555555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.72  E-value=5.3e-05  Score=62.73  Aligned_cols=75  Identities=32%  Similarity=0.362  Sum_probs=53.6

Q ss_pred             CCCCcccceeeCCC---------------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCC
Q 031545           67 VNPCTWFHITCNQD---------------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSL  131 (158)
Q Consensus        67 ~~~c~~~gv~c~~~---------------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L  131 (158)
                      .++|.-.-.+|+..               ..++.||+++|.+...-+..|.++++|+.+.+..|.++ .+|.......+|
T Consensus        49 ~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl  127 (873)
T KOG4194|consen   49 TCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHL  127 (873)
T ss_pred             cCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccce
Confidence            35666666667542               25678999999999888888999999999999999888 677654444445


Q ss_pred             CEEecccCccc
Q 031545          132 ISLDLYNNNIS  142 (158)
Q Consensus       132 ~~L~Ls~N~l~  142 (158)
                      +.|+|-+|.++
T Consensus       128 ~~L~L~~N~I~  138 (873)
T KOG4194|consen  128 EKLDLRHNLIS  138 (873)
T ss_pred             eEEeeeccccc
Confidence            55555555444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.71  E-value=3.5e-06  Score=72.27  Aligned_cols=75  Identities=31%  Similarity=0.501  Sum_probs=57.1

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCc-cccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV-ELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .++.|.+.+|.+++.+-+.+.+..+|+.|++++|++. .+|. .+.+++.|+.|+||+|+++ .+|.++.++..|++|
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL  435 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence            4566778888888887777888888888888888887 5665 4577788888888888888 778877777766553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.70  E-value=1.5e-05  Score=68.48  Aligned_cols=64  Identities=23%  Similarity=0.324  Sum_probs=40.8

Q ss_pred             EEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccC
Q 031545           83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAK  151 (158)
Q Consensus        83 l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~  151 (158)
                      ++.|++++|.+. .+|..   ..+|+.|++++|+++ .+|..+..+++|+.+++++|.++|..|..+.+
T Consensus       404 L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        404 LKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             CCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            444445555444 23321   234566666777766 67777778888888888888888877766533

>PLN03210 Resistant to P

Probab=97.68  E-value=6.7e-05  Score=67.41  Aligned_cols=74  Identities=23%  Similarity=0.285  Sum_probs=42.4

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+. .++..+..+++|+.++++++...+.+|. +..+++|+.|++++|.....+|..++++++|+.
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence            4566666666655 4455555666666666666544445553 555666666666665444456665555555543

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.67  E-value=1.5e-05  Score=69.45  Aligned_cols=78  Identities=37%  Similarity=0.509  Sum_probs=70.1

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+.++.||+++|.--+.+|..++.+.+|++|++++..+. .+|..++++..|.+|++..+.....+|.....|++|++|
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence            457899999998887899999999999999999999999 899999999999999999988766777877778998875

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.66  E-value=0.00029  Score=60.64  Aligned_cols=40  Identities=15%  Similarity=0.095  Sum_probs=27.1

Q ss_pred             hhhhhcCCchHHHHHHHHHHhCCCCCC---CCCCCCCCCCCCCc
Q 031545           31 SLVAVASGNSEGDALYALRRSLSDPDN---VLQSWDPTLVNPCT   71 (158)
Q Consensus        31 ~~~~~~~~~~~~~~l~~~~~~~~~~~~---~l~~w~~~~~~~c~   71 (158)
                      |..+......+...++++.+.+..|.-   ...+|+.. .+.|.
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~-~~fc~   96 (754)
T PRK15370         54 CHPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGA-DQYCI   96 (754)
T ss_pred             hCCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCC-Ccccc
Confidence            455667788999999999998876641   12347654 45664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.58  E-value=4.3e-06  Score=68.56  Aligned_cols=73  Identities=33%  Similarity=0.562  Sum_probs=52.0

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ++..+|.+.|.+. .+|+.++.+.+|+.+.+..|.+. .+|..+..|+ |..||+|.|+++ .+|-.|.+|+.|++|
T Consensus       167 tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l  239 (722)
T KOG0532|consen  167 TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVL  239 (722)
T ss_pred             hHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheee
Confidence            4566777777777 66777777777777777777766 5666666555 677777777777 777777777777654

>PLN03210 Resistant to P

Probab=97.51  E-value=0.00018  Score=64.80  Aligned_cols=74  Identities=23%  Similarity=0.293  Sum_probs=51.2

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      .+++.|+++++...+.+| .+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             CCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence            467788888766444555 37777888888888877666778888888888888887765444666654 444444

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.44  E-value=4e-05  Score=60.88  Aligned_cols=65  Identities=40%  Similarity=0.651  Sum_probs=40.5

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCC-CCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLE-HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSL  149 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l  149 (158)
                      .++.+++.+|.+. .+++....+. +|+.|++++|++. .+|..+..++.|+.|++++|.++ .+|...
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~  182 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLL  182 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhh
Confidence            4666677777766 5555555553 6677777777666 45555666666666666666666 455533

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.44  E-value=6.3e-05  Score=57.60  Aligned_cols=37  Identities=32%  Similarity=0.439  Sum_probs=16.1

Q ss_pred             CEEEEEcCCCCCCcc----chhhhcCCCCCCEEeccCCccC
Q 031545           82 RVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQ  118 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~  118 (158)
                      +++++++++|.+++.    ++..+..+++|+.|++++|.+.
T Consensus       138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            445555555554421    1223333444444444444444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.32  E-value=7e-05  Score=57.37  Aligned_cols=60  Identities=32%  Similarity=0.436  Sum_probs=31.5

Q ss_pred             EEEEEcCCCCCCc----cchhhhcCC-CCCCEEeccCCccCCC----CCccccCCCCCCEEecccCccc
Q 031545           83 VTRLDLGNSNLSG----RLVPELGKL-EHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        83 l~~L~l~~n~l~~----~~p~~~~~l-~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      ++.|++++|.+.+    .+...+..+ ++|+.+++++|.+++.    ++..+..++.|+.|++++|.++
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            5566666665552    122233444 5666666666665532    2223444556666666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.31  E-value=0.00016  Score=62.23  Aligned_cols=27  Identities=37%  Similarity=0.648  Sum_probs=16.5

Q ss_pred             CCCEEecccCcccccCCccccCCCCCCC
Q 031545          130 SLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus       130 ~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +|+.|++++|.++ .+|..+.++++|+.
T Consensus       423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~  449 (788)
T PRK15387        423 GLLSLSVYRNQLT-RLPESLIHLSSETT  449 (788)
T ss_pred             hhhhhhhccCccc-ccChHHhhccCCCe
Confidence            4555666666665 56666666666553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.31  E-value=2.4e-05  Score=64.26  Aligned_cols=72  Identities=36%  Similarity=0.496  Sum_probs=50.4

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .++.++|+.|++. ..|..++.++ |+.|-+++|+++ .+|+.++.++.|..||.+.|++. .+|..++++.+|+.
T Consensus       122 ~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~  193 (722)
T KOG0532|consen  122 ALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD  193 (722)
T ss_pred             HHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH
Confidence            4556677777776 6666676665 677777777777 57777777777777777777777 66777777766553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.27  E-value=0.00015  Score=57.65  Aligned_cols=72  Identities=35%  Similarity=0.563  Sum_probs=58.7

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.+++++|.+. .+|..+..++.|+.|+++.|++. .+|...+.++.|+.|++++|.++ .+|..+.....|.
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~  212 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE  212 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhh
Confidence            6889999999988 66677888999999999999999 67776668889999999999998 7887654444343

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.22  E-value=0.00055  Score=58.98  Aligned_cols=12  Identities=42%  Similarity=0.540  Sum_probs=5.1

Q ss_pred             EEEEEcCCCCCC
Q 031545           83 VTRLDLGNSNLS   94 (158)
Q Consensus        83 l~~L~l~~n~l~   94 (158)
                      ++.|++++|.++
T Consensus       201 L~~L~Ls~N~Lt  212 (754)
T PRK15370        201 ITTLILDNNELK  212 (754)
T ss_pred             CcEEEecCCCCC
Confidence            344444444444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.96  E-value=0.00026  Score=32.77  Aligned_cols=20  Identities=45%  Similarity=0.678  Sum_probs=11.7

Q ss_pred             CCEEecccCcccccCCccccC
Q 031545          131 LISLDLYNNNISGKIPPSLAK  151 (158)
Q Consensus       131 L~~L~Ls~N~l~g~~P~~l~~  151 (158)
                      |++||+++|.++ .+|..+++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            556666666666 55555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.95  E-value=0.00018  Score=55.47  Aligned_cols=73  Identities=29%  Similarity=0.402  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCc----------------------cccCCCCCCEEecc
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV----------------------ELGNLKSLISLDLY  137 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~----------------------~~~~l~~L~~L~Ls  137 (158)
                      .+.++.|++++|++. .+ ..+..+++|+.||+++|.++. +-.                      .+..+-+|..||++
T Consensus       306 ~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~  382 (490)
T KOG1259|consen  306 APKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLS  382 (490)
T ss_pred             ccceeEEecccccee-ee-hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecccc
Confidence            357889999999987 33 337788899999999997762 211                      23344567778888


Q ss_pred             cCcccccCC--ccccCCCCCC
Q 031545          138 NNNISGKIP--PSLAKLKSLV  156 (158)
Q Consensus       138 ~N~l~g~~P--~~l~~l~~L~  156 (158)
                      +|++. .+-  ..+|+++-|.
T Consensus       383 ~N~Ie-~ldeV~~IG~LPCLE  402 (490)
T KOG1259|consen  383 SNQIE-ELDEVNHIGNLPCLE  402 (490)
T ss_pred             ccchh-hHHHhcccccccHHH
Confidence            88776 332  2466665544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.82  E-value=8.4e-05  Score=50.98  Aligned_cols=64  Identities=28%  Similarity=0.308  Sum_probs=56.1

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP  147 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~  147 (158)
                      +.++.+++++|.+. .+|.++..++.|+.++++.|.+. ..|..+..+.+|.+|+..+|... ++|-
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~  140 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDV  140 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcH
Confidence            35789999999999 88999999999999999999999 67887878999999999888876 5654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.62  E-value=0.0021  Score=46.78  Aligned_cols=58  Identities=31%  Similarity=0.289  Sum_probs=31.7

Q ss_pred             EEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545           83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        83 l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      ...+||++|.+...  +.|..++.|.+|.+++|+++..-|.--.-++.|..|.|.+|.+.
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            34566666665421  23555666666666666666433332233455666666666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.48  E-value=0.0011  Score=30.65  Aligned_cols=21  Identities=43%  Similarity=0.814  Sum_probs=13.4

Q ss_pred             CCCEEeccCCccCCCCCccccC
Q 031545          106 HLQYLELYKNNIQGTIPVELGN  127 (158)
Q Consensus       106 ~L~~L~l~~n~l~g~~p~~~~~  127 (158)
                      +|++|++++|+++ .+|+.|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566777777777 66665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.41  E-value=0.002  Score=51.81  Aligned_cols=59  Identities=32%  Similarity=0.360  Sum_probs=41.1

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      .+++.+++.+|.|. .+...+..+++|+.|++++|.++...  .+..++.|+.|++++|.++
T Consensus        95 ~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   95 KSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS  153 (414)
T ss_pred             cceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch
Confidence            45777888888877 33333666778888888888887432  2556666778888888776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.31  E-value=0.0023  Score=47.97  Aligned_cols=42  Identities=33%  Similarity=0.424  Sum_probs=23.2

Q ss_pred             hcCCCCCCEEeccCC--ccCCCCCccccCCCCCCEEecccCccc
Q 031545          101 LGKLEHLQYLELYKN--NIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus       101 ~~~l~~L~~L~l~~n--~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      +..+++|+.|.++.|  ...+.++.-...+++|+++++++|++.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            445556666666666  444444444444566666666666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.81  E-value=0.0013  Score=56.08  Aligned_cols=39  Identities=23%  Similarity=0.479  Sum_probs=26.6

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP  122 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p  122 (158)
                      ..++.|+|+.|+++ .+. .+..+++|++||++.|.+. .+|
T Consensus       187 ~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp  225 (1096)
T KOG1859|consen  187 PALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVP  225 (1096)
T ss_pred             HHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-ccc
Confidence            35677778888776 332 5667777888888877776 444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.76  E-value=0.00061  Score=57.95  Aligned_cols=62  Identities=24%  Similarity=0.329  Sum_probs=52.7

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP  147 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~  147 (158)
                      .+..+++++|.+. ..-+.+.-++.++.|+|++|+++. . +.+..++.|++|||+.|.+. .+|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~  226 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQ  226 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccc
Confidence            4567788899988 777888888999999999999994 3 37888999999999999998 7775

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.70  E-value=0.00015  Score=53.82  Aligned_cols=75  Identities=29%  Similarity=0.291  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      ..+++.||++.|.+. .....|..++.+..|+++.|++. .+|..++++..+..+++..|.++ ..|.+++..+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            357888888888766 44455666777777888888777 67777777777777777777777 67777777776654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.63  E-value=0.0066  Score=26.13  Aligned_cols=13  Identities=46%  Similarity=0.692  Sum_probs=5.9

Q ss_pred             CCCEEecccCccc
Q 031545          130 SLISLDLYNNNIS  142 (158)
Q Consensus       130 ~L~~L~Ls~N~l~  142 (158)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4556666666554

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.15  E-value=0.025  Score=41.32  Aligned_cols=77  Identities=30%  Similarity=0.203  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCC--ccccCCCCCCEEecccCcccccCCc----cccCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP--VELGNLKSLISLDLYNNNISGKIPP----SLAKLK  153 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p--~~~~~l~~L~~L~Ls~N~l~g~~P~----~l~~l~  153 (158)
                      .+++..|.+.+|.|+..-|.--..++.|..|.+.+|.+. .+-  ..+..+|.|++|.+-+|..+.. ..    .+..++
T Consensus        63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp  140 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHK-KNYRLYVLYKLP  140 (233)
T ss_pred             ccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcc-cCceeEEEEecC
Confidence            468899999999999554443344678999999999887 222  2356789999999999987732 22    455666


Q ss_pred             CCCCC
Q 031545          154 SLVFL  158 (158)
Q Consensus       154 ~L~~L  158 (158)
                      +|++|
T Consensus       141 ~l~~L  145 (233)
T KOG1644|consen  141 SLRTL  145 (233)
T ss_pred             cceEe
Confidence            66543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.78  E-value=0.014  Score=47.02  Aligned_cols=61  Identities=30%  Similarity=0.312  Sum_probs=40.6

Q ss_pred             CEEEEEcCCCCCCccc-hhhhcCCCCCCEEeccCCccCCC-CCcc-----ccCCCCCCEEecccCccc
Q 031545           82 RVTRLDLGNSNLSGRL-VPELGKLEHLQYLELYKNNIQGT-IPVE-----LGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~g~-~p~~-----~~~l~~L~~L~Ls~N~l~  142 (158)
                      ++++|||++|++-..- -.....++.|+.|+++.+.+... .|+.     ...+++|++|+++.|.+.
T Consensus       247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            5677888887766221 14466677777777777776632 2332     345688899999988875

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.75  E-value=0.01  Score=50.88  Aligned_cols=74  Identities=24%  Similarity=0.378  Sum_probs=43.6

Q ss_pred             CEEEEEcCCCCCC-ccchhhhcC-CCCCCEEeccCCccCC-CCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLS-GRLVPELGK-LEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~-~~~p~~~~~-l~~L~~L~l~~n~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|+++|.... ...|..++. +|+|+.|.+.+-.+.. .+-.-..++|+|..||+|+.+++ .+ ..+++|++|++
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV  199 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence            4667777765532 233444444 6777777777766542 22233456677777777777766 33 45666666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.70  E-value=0.009  Score=48.07  Aligned_cols=59  Identities=34%  Similarity=0.487  Sum_probs=46.3

Q ss_pred             EEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc
Q 031545           83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG  143 (158)
Q Consensus        83 l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g  143 (158)
                      +..+.+..|.+.. +-..+..+.+|+.+++.+|++.+ +...+..+++|++|++++|.++.
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~  132 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK  132 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccc
Confidence            4455577777763 34457889999999999999994 44447789999999999999983

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.63  E-value=0.032  Score=26.49  Aligned_cols=20  Identities=50%  Similarity=0.811  Sum_probs=14.3

Q ss_pred             CCCCCEEecccCcccccCCcc
Q 031545          128 LKSLISLDLYNNNISGKIPPS  148 (158)
Q Consensus       128 l~~L~~L~Ls~N~l~g~~P~~  148 (158)
                      +++|++|+|++|.++ .+|+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            456788888888887 56654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.63  E-value=0.032  Score=26.49  Aligned_cols=20  Identities=50%  Similarity=0.811  Sum_probs=14.3

Q ss_pred             CCCCCEEecccCcccccCCcc
Q 031545          128 LKSLISLDLYNNNISGKIPPS  148 (158)
Q Consensus       128 l~~L~~L~Ls~N~l~g~~P~~  148 (158)
                      +++|++|+|++|.++ .+|+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            456788888888887 56654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.60  E-value=0.0093  Score=48.03  Aligned_cols=59  Identities=25%  Similarity=0.289  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCC--ccccCCCCCCEEecccCccc
Q 031545           83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP--VELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        83 l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p--~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      +..|++++|...+....+...+..|+.|||++|.+- ..+  ...+.++.|+.|+++.+.+.
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~  284 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIA  284 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcc
Confidence            444555555322222222333445555666555544 222  23445555555555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.22  E-value=0.055  Score=41.97  Aligned_cols=60  Identities=28%  Similarity=0.248  Sum_probs=32.9

Q ss_pred             CEEEEEcCCCCCCcc--chhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcc
Q 031545           82 RVTRLDLGNSNLSGR--LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI  141 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l  141 (158)
                      ++.++||.+|.|+..  +..-+..++.|+.|+++.|++...|-..-..+.+|+.|-|.+..+
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            566677777776642  223344567777777777776643322112344555555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.89  E-value=0.0076  Score=46.16  Aligned_cols=68  Identities=29%  Similarity=0.306  Sum_probs=54.4

Q ss_pred             eCCCCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCc--cccCCCCCCEEecccCcccccCCc
Q 031545           77 CNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV--ELGNLKSLISLDLYNNNISGKIPP  147 (158)
Q Consensus        77 c~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~--~~~~l~~L~~L~Ls~N~l~g~~P~  147 (158)
                      |...+.++.|.|+-|.|+..  ..+..+++|+.|.|..|.|.. +-+  .+.++++|+.|+|..|.-.|.-+.
T Consensus        37 c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccch
Confidence            66677899999999999833  347788999999999999873 332  367899999999999988876553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.62  E-value=0.0044  Score=47.40  Aligned_cols=73  Identities=27%  Similarity=0.247  Sum_probs=53.7

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc--cccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP--SLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~--~l~~l~~L~~L  158 (158)
                      ..+++|++=|+++.+.  .-..+++.|+.|.|+-|.++..-  .+..+++|++|+|-.|.+. .+-+  .+.++++|+.|
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence            4466777777777633  23456899999999999999533  3778999999999999887 4433  46677777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.34  E-value=0.084  Score=39.75  Aligned_cols=62  Identities=31%  Similarity=0.439  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCCC--CCCccchhhhcCCCCCCEEeccCCccCCCCCccc---cCCCCCCEEecccCcccc
Q 031545           80 DNRVTRLDLGNS--NLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL---GNLKSLISLDLYNNNISG  143 (158)
Q Consensus        80 ~~~l~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~---~~l~~L~~L~Ls~N~l~g  143 (158)
                      .+.+++|.++.|  .+.+.++....++++|+++++++|++.-  ++.+   ..+.+|..|++.++...+
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc
Confidence            357889999999  6666666666677999999999999872  3433   445667788888776553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.09  E-value=0.099  Score=45.06  Aligned_cols=18  Identities=28%  Similarity=0.562  Sum_probs=13.0

Q ss_pred             eCCCCCEEEEEcCCCCCC
Q 031545           77 CNQDNRVTRLDLGNSNLS   94 (158)
Q Consensus        77 c~~~~~l~~L~l~~n~l~   94 (158)
                      |.+-+++..||+++.+++
T Consensus       169 c~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNIS  186 (699)
T ss_pred             hhccCccceeecCCCCcc
Confidence            445567888888887776

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.77  E-value=0.15  Score=39.23  Aligned_cols=42  Identities=31%  Similarity=0.438  Sum_probs=25.0

Q ss_pred             hcCCCCCCEEeccCCccCCCCCcc----ccCCCCCCEEecccCccc
Q 031545          101 LGKLEHLQYLELYKNNIQGTIPVE----LGNLKSLISLDLYNNNIS  142 (158)
Q Consensus       101 ~~~l~~L~~L~l~~n~l~g~~p~~----~~~l~~L~~L~Ls~N~l~  142 (158)
                      +.++++|+..++|.|-|....|+.    +..-..|.+|.+++|.+.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            455666666777776666555543    233456666666666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=90.70  E-value=0.36  Score=39.13  Aligned_cols=32  Identities=22%  Similarity=0.241  Sum_probs=13.9

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN  115 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  115 (158)
                      ++++|.++++.--..+|..+.  .+|+.|++++|
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             CCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            355555554222123333231  34555555555

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.62  E-value=0.047  Score=25.38  Aligned_cols=15  Identities=47%  Similarity=0.618  Sum_probs=7.5

Q ss_pred             CCCCEEecccCcccc
Q 031545          129 KSLISLDLYNNNISG  143 (158)
Q Consensus       129 ~~L~~L~Ls~N~l~g  143 (158)
                      ++|++|++++|.++.
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            456666666666553

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=89.48  E-value=0.25  Score=23.73  Aligned_cols=18  Identities=33%  Similarity=0.600  Sum_probs=13.0

Q ss_pred             CCCCEEecccCcccccCCc
Q 031545          129 KSLISLDLYNNNISGKIPP  147 (158)
Q Consensus       129 ~~L~~L~Ls~N~l~g~~P~  147 (158)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            35777778888777 6676

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=88.21  E-value=0.23  Score=39.12  Aligned_cols=65  Identities=26%  Similarity=0.313  Sum_probs=34.2

Q ss_pred             CCEEEEEcCCCCCCc----cchhhhcCCCCCCEEeccCCccCC----CCCcc-------ccCCCCCCEEecccCcccccC
Q 031545           81 NRVTRLDLGNSNLSG----RLVPELGKLEHLQYLELYKNNIQG----TIPVE-------LGNLKSLISLDLYNNNISGKI  145 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~g----~~p~~-------~~~l~~L~~L~Ls~N~l~g~~  145 (158)
                      ..++.|+|++|.+.-    .+.+.+.+.+.|+..++++-. +|    .+|+.       +...+.|+++|||+|.|...-
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            457778888877652    223344455556666555421 22    23332       223456666666666665443


Q ss_pred             C
Q 031545          146 P  146 (158)
Q Consensus       146 P  146 (158)
                      +
T Consensus       109 ~  109 (382)
T KOG1909|consen  109 I  109 (382)
T ss_pred             h
Confidence            3

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.29  E-value=0.38  Score=37.50  Aligned_cols=72  Identities=22%  Similarity=0.296  Sum_probs=49.9

Q ss_pred             cccceee--CCCCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCC-CCCccccCCCCCCEEecccCccc
Q 031545           71 TWFHITC--NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        71 ~~~gv~c--~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g-~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      .|..|.|  ...++++.|+++.|.+...+...-..+.+|+.+-+.+..+.- .....+..+|.++.|.+|.|.+.
T Consensus        85 dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen   85 DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            3555543  567899999999999985544332456788888888776652 33445667788888888887443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.38  E-value=0.65  Score=22.21  Aligned_cols=15  Identities=47%  Similarity=0.594  Sum_probs=12.3

Q ss_pred             CCCCCEEecccCccc
Q 031545          128 LKSLISLDLYNNNIS  142 (158)
Q Consensus       128 l~~L~~L~Ls~N~l~  142 (158)
                      +.+|+.|++++|.++
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            457889999999886

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.27  E-value=0.17  Score=36.94  Aligned_cols=75  Identities=25%  Similarity=0.224  Sum_probs=45.0

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCC-CCCcccc-CCCCCCEEecccC-cccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-TIPVELG-NLKSLISLDLYNN-NISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g-~~p~~~~-~l~~L~~L~Ls~N-~l~g~~P~~l~~l~~L~  156 (158)
                      .|+.+|-++..|...--+.+..+++++.+.+.++.--+ ..-+.++ -.++|+.|++++| +++..=-..+..+++|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            47788888888776656677778888888777765321 1111121 3478888888876 34432223445555554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=83.93  E-value=0.91  Score=21.89  Aligned_cols=14  Identities=50%  Similarity=0.615  Sum_probs=11.1

Q ss_pred             CCCCEEecccCccc
Q 031545          129 KSLISLDLYNNNIS  142 (158)
Q Consensus       129 ~~L~~L~Ls~N~l~  142 (158)
                      ++|++|||++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            46888888888875

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=83.21  E-value=0.55  Score=37.07  Aligned_cols=61  Identities=20%  Similarity=0.275  Sum_probs=32.2

Q ss_pred             CEEEEEcCCCCCCc----cchhhhcCCCCCCEEeccCCccCCC----CCccccCCCCCCEEecccCccc
Q 031545           82 RVTRLDLGNSNLSG----RLVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        82 ~l~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      .+..+.++.|.|..    .+...+..+++|+.||++.|.|+-.    +-..+..+++|+.++++++.++
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            45566666665541    1233455666677777776666522    1123444555666666555443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.10  E-value=0.039  Score=41.34  Aligned_cols=59  Identities=17%  Similarity=0.110  Sum_probs=52.9

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      +++.++++.|.+. ..|.++..+..++.+++..|.++ ..|-+++..+.++++++-.|.|.
T Consensus        66 ~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   66 RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            5677899999988 88999999999999999999998 78999999999999999998865

>PRK15386 type III secretion protein GogB; Provisional

Probab=81.87  E-value=2.8  Score=34.14  Aligned_cols=62  Identities=23%  Similarity=0.298  Sum_probs=36.3

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccC-cccccCCccc
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN-NISGKIPPSL  149 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N-~l~g~~P~~l  149 (158)
                      ..++.|++++|.+. .+| .+  ..+|+.|.++++.--..+|+.+  .++|++|++++| .+. .+|..+
T Consensus        52 ~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~sL  114 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPESV  114 (426)
T ss_pred             cCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccccc
Confidence            34678888888777 445 22  3468888887743323556544  246666666665 333 444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=81.82  E-value=0.98  Score=35.32  Aligned_cols=55  Identities=33%  Similarity=0.404  Sum_probs=29.6

Q ss_pred             CEEEEEcCCCC-CCccchhhhcCCCCCCEEeccCCccCCCCCcc---ccCCCCCCEEeccc
Q 031545           82 RVTRLDLGNSN-LSGRLVPELGKLEHLQYLELYKNNIQGTIPVE---LGNLKSLISLDLYN  138 (158)
Q Consensus        82 ~l~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~---~~~l~~L~~L~Ls~  138 (158)
                      +++.|||+.+. ++.....+|.+++.|+++.++.+..  .+|..   +...|+|.+||..+
T Consensus       314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             ceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence            45666666543 4444445566666666666666542  23332   34456666666543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=80.39  E-value=3.2  Score=26.99  Aligned_cols=56  Identities=14%  Similarity=0.220  Sum_probs=26.5

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN  139 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N  139 (158)
                      .++.+.+..+ +...-...|..+..++.+.+.+ .+...-...|..+++|+.+++..+
T Consensus        36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred             cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence            3556666553 4423334455565677777754 322122334556677777776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-11
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		8e-08
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-08

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 34/148 (22%)
Query: 41  EGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDN---RVTRLDL------- 88
           +  AL  +++ L +P   L SW PT  + C  TW  + C+ D    RV  LDL       
Sbjct: 7   DKQALLQIKKDLGNP-TTLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 89  --------------------GNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNL 128
                               G +NL G + P + KL  L YL +   N+ G IP  L  +
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 129 KSLISLDLYNNNISGKIPPSLAKLKSLV 156
           K+L++LD   N +SG +PPS++ L +LV
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLV 152

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 76  TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
           T + +  +  LD+  + LSG +  E+G + +L  L L  N+I G+IP E+G+L+ L  LD
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 136 LYNNNISGKIPPSLAKLKSLV 156
           L +N + G+IP +++ L  L 
Sbjct: 687 LSSNKLDGRIPQAMSALTMLT 707

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 76  TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
           T + +  +  LD+  + LSG +  E+G + +L  L L  N+I G+IP E+G+L+ L  LD
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 136 LYNNNISGKIPPSLAKLKSLV 156
           L +N + G+IP +++ L  L 
Sbjct: 684 LSSNKLDGRIPQAMSALTMLT 704

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  111 bits (279), Expect = 2e-30
 Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 32/151 (21%)

Query: 39  NSEGDALYALRRSLSDPDNVLQSWDPTL-VNPCTWFHITCN---QDNRVTRLDLGNSNLS 94
             +  AL  +++ L +P   L SW PT      TW  + C+   Q  RV  LDL   NL 
Sbjct: 5   PQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63

Query: 95  GRLV---------------------------PELGKLEHLQYLELYKNNIQGTIPVELGN 127
                                          P + KL  L YL +   N+ G IP  L  
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123

Query: 128 LKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           +K+L++LD   N +SG +PPS++ L +LV +
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 80.3 bits (199), Expect = 7e-19
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI-SLDLYNNNIS 142
             LD   + LSG L P +  L +L  +    N I G IP   G+   L  S+ +  N ++
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 143 GKIPPSLAKLKSLVFL 158
           GKIPP+ A L +L F+
Sbjct: 188 GKIPPTFANL-NLAFV 202

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
            T + +  + L+G++ P    L +L +++L +N ++G   V  G+ K+   + L  N+++
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 143 GKIPPSLAKLKSLVFL 158
             +   +   K+L  L
Sbjct: 235 FDL-GKVGLSKNLNGL 249

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 75.3 bits (186), Expect = 5e-17
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
            ++ L  ++L+  L  ++G  ++L  L+L  N I GT+P  L  LK L SL++  NN+ G
Sbjct: 224 QKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 144 KIPPS 148
           +IP  
Sbjct: 283 EIPQG 287

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.8 bits (120), Expect = 5e-08
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
             LDL N+ + G L   L +L+ L  L +  NN+ G IP + GNL+        NN 
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (270), Expect = 4e-28
 Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 9/135 (6%)

Query: 29  SSSLVAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDL 88
           S       S   E   L + +  L D  N+L  W     NPCT+  +TC  D++VT +DL
Sbjct: 1   SFQASPSQSLYREIHQLISFKDVLPDK-NLLPDWSSN-KNPCTFDGVTCR-DDKVTSIDL 57

Query: 89  GNSNLS---GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
            +  L+     +   L  L  L+ L L  ++I G++        SL SLDL  N++SG +
Sbjct: 58  SSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPV 116

Query: 146 PP--SLAKLKSLVFL 158
               SL     L FL
Sbjct: 117 TTLTSLGSCSGLKFL 131

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.4 bits (220), Expect = 2e-21
 Identities = 27/75 (36%), Positives = 45/75 (60%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L  + LSG +   LG L  L+ L+L+ N ++G IP EL  +K+L +L L  N+++G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 144 KIPPSLAKLKSLVFL 158
           +IP  L+   +L ++
Sbjct: 481 EIPSGLSNCTNLNWI 495

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.3 bits (212), Expect = 3e-20
 Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 84  TRLDLGNSNLSGRLVPELGK--LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
             LDL ++N SG ++P L +     LQ L L  N   G IP  L N   L+SL L  N +
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430

Query: 142 SGKIPPSLAKLKSLVFL 158
           SG IP SL  L  L  L
Sbjct: 431 SGTIPSSLGSLSKLRDL 447

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.6 bits (210), Expect = 5e-20
 Identities = 25/75 (33%), Positives = 41/75 (54%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L  + L G +  EL  ++ L+ L L  N++ G IP  L N  +L  + L NN ++G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 144 KIPPSLAKLKSLVFL 158
           +IP  + +L++L  L
Sbjct: 505 EIPKWIGRLENLAIL 519

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 7e-19
 Identities = 28/75 (37%), Positives = 39/75 (52%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L N+  +G++ P L     L  L L  N + GTIP  LG+L  L  L L+ N + G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 144 KIPPSLAKLKSLVFL 158
           +IP  L  +K+L  L
Sbjct: 457 EIPQELMYVKTLETL 471

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 9e-19
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNIS 142
           T LDL  ++  G + P  G    L+ L L  NN  G +P++ L  ++ L  LDL  N  S
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 143 GKIPPSLAKLK-SLVFL 158
           G++P SL  L  SL+ L
Sbjct: 357 GELPESLTNLSASLLTL 373

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 9e-19
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             LD+ ++N S  + P LG    LQ+L++  N + G     +     L  L++ +N   G
Sbjct: 203 EFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 144 KIPPSLAKLKSLVFL 158
            IPP    LKSL +L
Sbjct: 262 PIPPL--PLKSLQYL 274

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 1e-18
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L  ++L+G +   L    +L ++ L  N + G IP  +G L++L  L L NN+ SG
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 144 KIPPSLAKLKSLVFL 158
            IP  L   +SL++L
Sbjct: 529 NIPAELGDCRSLIWL 543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 1e-18
 Identities = 28/76 (36%), Positives = 47/76 (61%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
           +  LD+  + LSG +  E+G + +L  L L  N+I G+IP E+G+L+ L  LDL +N + 
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

Query: 143 GKIPPSLAKLKSLVFL 158
           G+IP +++ L  L  +
Sbjct: 694 GRIPQAMSALTMLTEI 709

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 1e-18
 Identities = 21/76 (27%), Positives = 37/76 (48%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
               ++ +    G   P       + +L++  N + G IP E+G++  L  L+L +N+IS
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 143 GKIPPSLAKLKSLVFL 158
           G IP  +  L+ L  L
Sbjct: 670 GSIPDEVGDLRGLNIL 685

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 2e-18
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            +  L +  + +SG +  ++ +  +L++L++  NN    IP  LG+  +L  LD+  N +
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235

Query: 142 SGKIPPSLAKLKSLVFL 158
           SG    +++    L  L
Sbjct: 236 SGDFSRAISTCTELKLL 252

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 2e-18
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             + L N+ L+G +   +G+LE+L  L+L  N+  G IP ELG+ +SLI LDL  N  +G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

Query: 144 KIPPSLAKLKSL 155
            IP ++ K    
Sbjct: 553 TIPAAMFKQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 2e-18
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 84  TRLDLGNSNLSGRLVPEL-GKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             L L  +  +G +   L G  + L  L+L  N+  G +P   G+   L SL L +NN S
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 143 GKIPP-SLAKLKSLVFL 158
           G++P  +L K++ L  L
Sbjct: 332 GELPMDTLLKMRGLKVL 348

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 5e-17
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             LD+  + LSG     +     L+ L +  N   G IP     LKSL  L L  N  +G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283

Query: 144 KIPPSLA-KLKSLVFL 158
           +IP  L+    +L  L
Sbjct: 284 EIPDFLSGACDTLTGL 299

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 15/73 (20%), Positives = 24/73 (32%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
                    G    +L +L       +      G       N  S++ LD+  N +SG I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 146 PPSLAKLKSLVFL 158
           P  +  +  L  L
Sbjct: 649 PKEIGSMPYLFIL 661

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.0 bits (180), Expect = 5e-16
 Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLK-SLISLDLYNNNI 141
             L L ++N SG L  + L K+  L+ L+L  N   G +P  L NL  SL++LDL +NN 
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 142 SGKIPPSLAK--LKSLVFL 158
           SG I P+L +    +L  L
Sbjct: 381 SGPILPNLCQNPKNTLQEL 399

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 8e-16
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 84  TRLDLGNSNLSGRLVPEL---GKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
             LDL  +++SG  V           L++L +  N I G +   +    +L  LD+ +NN
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN 211

Query: 141 ISGKIPPSLAKLKSLVFL 158
            S  I P L    +L  L
Sbjct: 212 FSTGI-PFLGDCSALQHL 228

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
           L+LG++++SG +  E+G L  L  L+L  N + G IP  +  L  L  +DL NNN+SG I
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

Query: 146 P 146
           P
Sbjct: 721 P 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L N++ SG +  ELG    L +L+L  N   GTIP  +       S  +  N I+G
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAG 572

Query: 144 KIPPSLAKLKSLVFL 158
           K    +         
Sbjct: 573 KRYVYIKNDGMKKEC 587

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.8 bits (143), Expect = 5e-11
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISG 143
             +  + ++G+    +      +      N ++  G    +L  L +    ++ +    G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 144 KIPPSLAKLKSLVFL 158
              P+     S++FL
Sbjct: 623 HTSPTFDNNGSMMFL 637

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 16/130 (12%)

Query: 41  EGDALYALRRSLSDPD--------NVLQSWDPTLVNPCTWFH---ITCNQDNRVTRLDLG 89
           +  AL  +  +L+  +            +W+        W     ++ N + RVT L L 
Sbjct: 31  DYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLE 89

Query: 90  NSNLSGRLVPELGKLEHLQYLELYKNNIQG----TIPVELGNLKSLISLDLYNNNISGKI 145
               SGR+   +G+L  L+ L L  +  +       P  +    S         +     
Sbjct: 90  GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149

Query: 146 PPSLAKLKSL 155
                +    
Sbjct: 150 VDYDPREDFS 159

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
            +  +GNS      + E  + E+ +Y + Y      T  ++  NLK L  +++YN     
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQY-----KTEDLKWDNLKDLTDVEVYNCPNLT 263

Query: 144 KIPPSLAKLKSLVFL 158
           K+P  L  L  +  +
Sbjct: 264 KLPTFLKALPEMQLI 278

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 5e-13
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNI--------QGTIPVELGNLKSLISLD 135
           T +++ N     +L   L  L  +Q + +  N                +    + +  + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 136 LYNNNI-SGKIPPSLAKLKSLVFL 158
           +  NN+ +  +  SL K+K L  L
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGML 335

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 8/81 (9%), Positives = 23/81 (28%), Gaps = 8/81 (9%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI---- 141
            +   +        +   L+ L  +E+Y       +P  L  L  +  +++  N      
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 142 ----SGKIPPSLAKLKSLVFL 158
                 +        + +  +
Sbjct: 290 QLKDDWQALADAPVGEKIQII 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 84  TRLDLGNSNL--------SGRLVPELGKLEHLQYLELYKNNIQ-GTIPVELGNLKSLISL 134
             +++  +            + + +    E +Q + +  NN++   +   L  +K L  L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 135 DLYNNNISGKIPPSLAKLKSLVFL 158
           +   N + G   P+      L  L
Sbjct: 336 ECLYNQLEG-KLPAFGSEIKLASL 358

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 14/89 (15%)

Query: 84  TRLDLGNSNLSG-------RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136
           + +D   + +          L P   K  ++  + L  N I             L S++L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 137 YNNNISG-------KIPPSLAKLKSLVFL 158
             N ++            +      L  +
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L+   + L G  +P  G    L  L L  N I        G  + + +L   +N +  
Sbjct: 333 GMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

Query: 144 KIPPSLA--KLKSLVFL 158
            IP       +  +  +
Sbjct: 392 -IPNIFDAKSVSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 6/77 (7%), Positives = 21/77 (27%), Gaps = 1/77 (1%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            + +  + +      +            +    NNI   +   +  L  L    + N+  
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPF 218

Query: 142 SGKIPPSLAKLKSLVFL 158
             +      + ++  + 
Sbjct: 219 VAENICEAWENENSEYA 235

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 10/84 (11%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-------TIPVELGNLKSLISLDL 136
           + ++L N+ +S            L  + L  N +                N   L S+DL
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 137 YNNNISGKIPPSLA--KLKSLVFL 158
             N ++  +        L  LV +
Sbjct: 496 RFNKLTK-LSDDFRATTLPYLVGI 518

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 9/83 (10%)

Query: 84  TRLDLGNSNLSG-------RLVPELGKLEHLQYLELYKNNIQGTIP-VELGNLKSLISLD 135
           + ++L  + L+                   L  ++L  N +           L  L+ +D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 136 LYNNNISGKIPPSLAKLKSLVFL 158
           L  N+ S   P       +L   
Sbjct: 520 LSYNSFSK-FPTQPLNSSTLKGF 541

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLEL------YKNNIQGTIPVELGNLKSLISLDLY 137
             +DL  ++ S     +      L+   +        N      P  +    SL  L + 
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 138 NNNISGKIPPSLAKLKSLVFL 158
           +N+I   +   +    ++  L
Sbjct: 575 SNDIRK-VNEKI--TPNISVL 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 8e-09
 Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
            D   +         +     L  L++  N+I+  +  ++    ++  LD+ +N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISID 603

Query: 146 PPSLAKLKSLVFL 158
              +         
Sbjct: 604 LSYVCPYIEAGMY 616

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 3/76 (3%)

Query: 85  RLDLGNSNLSGRLVPELGKLE--HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
           +      +     V    + +   L    +  +  Q +I            +   +NNI+
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 143 GKIPPSLAKLKSLVFL 158
             +  ++ +L  L   
Sbjct: 197 F-VSKAVMRLTKLRQF 211

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 119 GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
               V L +   +  L L     SG++P ++ +L  L  L
Sbjct: 71  AQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL 110

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 20/78 (25%), Positives = 27/78 (34%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
                LDL  + L             LQ L+L +  IQ        +L  L +L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 141 ISGKIPPSLAKLKSLVFL 158
           I      + + L SL  L
Sbjct: 88  IQSLALGAFSGLSSLQKL 105

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 20/75 (26%), Positives = 25/75 (33%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             LDL    +          L HL  L L  N IQ         L SL  L     N++ 
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 144 KIPPSLAKLKSLVFL 158
                +  LK+L  L
Sbjct: 115 LENFPIGHLKTLKEL 129

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             L +  ++     +P+   +L +L +L+L +  ++   P    +L SL  L++ +NN  
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 143 GKIPPSLAKLKSLVFL 158
                    L SL  L
Sbjct: 508 SLDTFPYKCLNSLQVL 523

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI-S 142
           + L L  + +    +     L  LQ L   + N+       +G+LK+L  L++ +N I S
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 143 GKIPPSLAKLKSLVFL 158
            K+P   + L +L  L
Sbjct: 139 FKLPEYFSNLTNLEHL 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 23/79 (29%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
             +T LDL    L          L  LQ L +  NN           L SL  LD   N+
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 141 ISGKIPPSLAKL-KSLVFL 158
           I       L     SL FL
Sbjct: 530 IMTSKKQELQHFPSSLAFL 548

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT-IPVELGNLKSLISLDLYNNNIS 142
            +L    +NL+      +G L+ L+ L +  N IQ   +P    NL +L  LDL +N I 
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 143 GKIPPSLAKLKSL 155
                 L  L  +
Sbjct: 163 SIYCTDLRVLHQM 175

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             LD  +SNL           L +L YL++   + +         L SL  L +  N+  
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 143 GKIPP-SLAKLKSLVFL 158
               P    +L++L FL
Sbjct: 459 ENFLPDIFTELRNLTFL 475

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 84  TRLDLGNSNLS--GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
             LDL  + LS  G           L+YL+L  N +  T+      L+ L  LD  ++N+
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 408

Query: 142 SGKIPPS-LAKLKSLVFL 158
                 S    L++L++L
Sbjct: 409 KQMSEFSVFLSLRNLIYL 426

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 84  TRLDLGNSNL-SGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSL----ISLDLYN 138
             L++ ++ + S +L      L +L++L+L  N IQ     +L  L  +    +SLDL  
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 139 NNISGKIPPSLAKLK 153
           N ++   P +  +++
Sbjct: 187 NPMNFIQPGAFKEIR 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNL-KSLISLDLYNNN 140
            +  L++ ++N           L  LQ L+   N+I  +   EL +   SL  L+L  N+
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

Query: 141 ISGKIP 146
            +    
Sbjct: 555 FACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQY----LELYKNNIQGTIPVELGNLKSLISLDLYNN 139
             LDL ++ +      +L  L  +      L+L  N +    P     +  L  L L NN
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210

Query: 140 NISGKIPP-SLAKLKSLVFL 158
             S  +    +  L  L   
Sbjct: 211 FDSLNVMKTCIQGLAGLEVH 230

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 7/77 (9%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS- 142
             L+L N             L+      L   + +G       +L SL  LDL  N +S 
Sbjct: 307 QHLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 143 -GKIPPSLAKLKSLVFL 158
            G    S     SL +L
Sbjct: 362 KGCCSQSDFGTTSLKYL 378

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 68  NPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVE-- 124
           NP  +      ++ R+ +L L N+  S  ++   +  L  L+   L     +    +E  
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 125 -LGNLKSLISLDLYNNNIS------GKIPPSLAKLKSLVFL 158
               L+ L +L +    ++        I      L ++   
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 5e-13
 Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 9/82 (10%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-- 143
            +   +            L+ L  +ELY       +P  L +L  L SL++  N      
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 144 -------KIPPSLAKLKSLVFL 158
                  ++         +   
Sbjct: 532 QLKADWTRLADDEDTGPKIQIF 553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.7 bits (155), Expect = 1e-12
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 12/86 (13%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG---------TIPVELGNLKSLISL 134
           T ++L N     +L   L  L  LQ L +  N              +  +      +   
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 135 DLYNNNISGKIPPS--LAKLKSLVFL 158
            +  NN+    P S  L K+  L  L
Sbjct: 554 YMGYNNLEE-FPASASLQKMVKLGLL 578

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 1e-12
 Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 14/142 (9%)

Query: 31  SLVAVASGNSEGDALYALRRSLSDPDNVLQSWDP----------TLVNPCTWFH---ITC 77
            L   A    +  AL A+  +L   +    S                    W     +  
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDL 319

Query: 78  NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137
           + + RVT L L      GR+   +G+L  L+ L    ++   +  +      +    +  
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 138 NNNISGKIPP-SLAKLKSLVFL 158
            + I        L   + L   
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLS 401

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 8e-12
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 19/90 (21%)

Query: 88  LGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-------------------TIPVELGNL 128
              +N    +   + +L  LQ +    +                          +   NL
Sbjct: 431 GNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 129 KSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           K L  ++LYN     ++P  L  L  L  L
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 75  ITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYK------NNIQGTIPVELGNL 128
                   ++ +D+  +  S     +      L+   +        N I    P  +   
Sbjct: 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805

Query: 129 KSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
            SLI L + +N+I  K+   L     L  L
Sbjct: 806 PSLIQLQIGSNDIR-KVDEKL--TPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 8e-09
 Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 10/86 (11%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQ-------GTIPVELGNLKSLISL 134
             + + L  + +             +  + L  N +                N   L ++
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 135 DLYNNNISGKIPPSLA--KLKSLVFL 158
           DL  N ++  +        L  L  +
Sbjct: 734 DLRFNKLTS-LSDDFRATTLPYLSNM 758

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 6/89 (6%)

Query: 76  TCNQDNRVTRLDLGNSNLSG-RLVPELGKLEHLQYLELYKNNIQG-----TIPVELGNLK 129
            C   ++V  L   ++ L     +     +  +  ++   N I       +  ++     
Sbjct: 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 130 SLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           +  ++ L  N I        A    +  +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTI 702

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 10/88 (11%), Positives = 23/88 (26%), Gaps = 14/88 (15%)

Query: 84  TRLDLGNSNLSGRLVPELG------KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137
             +D   + +       +       K  +   + L  N IQ            + ++ L 
Sbjct: 647 GSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 138 NNNIS-------GKIPPSLAKLKSLVFL 158
           NN ++            +      L  +
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTI 733

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 5e-08
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 84  TRLDLGNSNLSGRLVP-ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
               +G +NL        L K+  L  L+   N ++  +    G    L  L L  N I 
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE 608

Query: 143 GKIPPSL-AKLKSLVFL 158
             IP    A    +  L
Sbjct: 609 E-IPEDFCAFTDQVEGL 624

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 8/92 (8%)

Query: 73  FHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG------TIPVELG 126
             +  + D R+   DL     +    PE+  ++    + L    I         I   + 
Sbjct: 388 KKMFLDYDQRLNLSDL--LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ 445

Query: 127 NLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
            L  L  +   N+  +        +  +  + 
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI-SGK 144
            D   + +  +    +     L  L++  N+I+  +  +L     L  LD+ +N   S  
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISID 843

Query: 145 IPPSLAKLKSLVFL 158
           +      +++ +++
Sbjct: 844 VTSVCPYIEAGMYV 857

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 21/75 (28%), Positives = 34/75 (45%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L+L ++ LS           +L  L L  N+IQ          K+LI+LDL +N +S 
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 144 KIPPSLAKLKSLVFL 158
               +  +L++L  L
Sbjct: 136 TKLGTQVQLENLQEL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 20/75 (26%), Positives = 30/75 (40%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T LD+G + +S        KL  L+ L L  N +            +L  L L +N+I  
Sbjct: 52  TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

Query: 144 KIPPSLAKLKSLVFL 158
                  K K+L+ L
Sbjct: 112 IKNNPFVKQKNLITL 126

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 18/76 (23%), Positives = 30/76 (39%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
           +T L+L ++ L         +   L  L++  N I    P     L  L  L+L +N +S
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 143 GKIPPSLAKLKSLVFL 158
                + A   +L  L
Sbjct: 87  QLSDKTFAFCTNLTEL 102

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLE--HLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138
             +  L L NS LS         L+  +L  L+L  NN+          L  L    L  
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 139 NNISGKIPPSLAKLKSLVFL 158
           NNI      SL  L ++ +L
Sbjct: 282 NNIQHLFSHSLHGLFNVRYL 301

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 8/83 (9%)

Query: 84  TRLDLGNSNLS--------GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
             LDL ++NL+        G  +  L  L HL  L L  N           +L  L  +D
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 136 LYNNNISGKIPPSLAKLKSLVFL 158
           L  NN++           SL  L
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSL 589

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 84  TRLDLGNSNLSGRLVP-ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             LDLG + +   L   E   LE++  + L  N            + SL  L L    + 
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 143 G--KIPPSLAKLKSLVFL 158
                P     L++L  L
Sbjct: 468 NVDSSPSPFQPLRNLTIL 485

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T L L ++++         K ++L  L+L  N +  T       L++L  L L NN I  
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 144 KIPPSLA--KLKSLVFL 158
                L      SL  L
Sbjct: 160 LKSEELDIFANSSLKKL 176

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            +  L+L ++      V     L  L+ ++L  NN+         N  SL SL+L  N I
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

Query: 142 SGKIPPSLAK-LKSLVFL 158
           +           ++L  L
Sbjct: 597 TSVEKKVFGPAFRNLTEL 614

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
              D  +  L+   VP+     ++  L L  N ++            L SLD+  N IS 
Sbjct: 7   EVADCSHLKLTQ--VPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 144 KIPPSLAKLKSLVFL 158
             P    KL  L  L
Sbjct: 64  LEPELCQKLPMLKVL 78

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 84  TRLDLGNSNLSGRLVPELG----KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
             L L NS  S R +            L  L L KN I          L  L  LDL  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 140 NISGKIPPS-LAKLKSLVFL 158
            I  ++       L+++  +
Sbjct: 416 EIGQELTGQEWRGLENIFEI 435

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN---- 139
           T LDL  +NL+         L  L+Y  L  NNIQ      L  L ++  L+L  +    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 140 -----NISGKIPPSLAKLKSLVFL 158
                ++      S   LK L  L
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHL 334

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 84  TRLDLGNSNLSG--RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            RL L    L            L +L  L+L  NNI       L  L+ L  LDL +NN+
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 142 S--------GKIPPSLAKLKSLVFL 158
           +        G     L  L  L  L
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHIL 541

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 82  RVTRLDLGNSNLSGRLVPELG--KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
            +  L L N+ +      EL       L+ LEL  N I+   P     +  L  L L N 
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 140 NISGKIPPSLA---KLKSLVFL 158
            +   +   L       S+  L
Sbjct: 206 QLGPSLTEKLCLELANTSIRNL 227

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELG---NLKSLISLDLYNNN 140
            +L+L ++ +          +  L  L L    +  ++  +L       S+ +L L N+ 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 141 ISGKIPPSLAKLK--SLVFL 158
           +S     +   LK  +L  L
Sbjct: 234 LSTTSNTTFLGLKWTNLTML 253

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 14/67 (20%), Positives = 27/67 (40%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T+  +  ++L          L+ L++L +  N+I G        L +L  L L N+  S 
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 144 KIPPSLA 150
           +   +  
Sbjct: 368 RTLTNET 374

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELG-NLKSLISLDLYNNN 140
            +  +DLG +NL+            L+ L L KN I        G   ++L  LD+  N 
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

Query: 141 ISGKIP 146
                 
Sbjct: 621 FDCTCE 626

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 7e-12
 Identities = 18/75 (24%), Positives = 30/75 (40%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             LDL          P  G    L+ L L   +   T+P+++  L  L  LDL       
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 144 KIPPSLAKLKSLVFL 158
           ++P  +A+L +   +
Sbjct: 292 RLPSLIAQLPANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L + NS LS  L P +  L  L+ L+L         P   G    L  L L + +   
Sbjct: 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 144 KIPPSLAKLKSLVFL 158
            +P  + +L  L  L
Sbjct: 268 TLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             + +  + L   L   + +   L+ L L +N ++  +P  + +L  L  L +       
Sbjct: 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164

Query: 144 KIPPSLAKLKSLVFL 158
           ++P  LA   +    
Sbjct: 165 ELPEPLASTDASGEH 179

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 84  TRLDL-GNSNL--------SGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISL 134
             L +     L        S     E   L +LQ L L    I+ ++P  + NL++L SL
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211

Query: 135 DLYNNNISGKIPPSLAKLKSLVFL 158
            + N+ +S  + P++  L  L  L
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEEL 234

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 11/84 (13%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGN---------LKSLISL 134
             L L  + L   L   +  L  L+ L +        +P  L +         L +L SL
Sbjct: 130 ETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 135 DLYNNNISGKIPPSLAKLKSLVFL 158
            L    I   +P S+A L++L  L
Sbjct: 189 RLEWTGIR-SLPASIANLQNLKSL 211

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 5/80 (6%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKL--EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138
           N           L       L          LEL    +    P +   L  L  + +  
Sbjct: 56  NNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDA 113

Query: 139 NNISGKIPPSLAKLKSLVFL 158
             +  ++P ++ +   L  L
Sbjct: 114 AGLM-ELPDTMQQFAGLETL 132

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN---N 140
            RL L + +    L  ++ +L  L+ L+L        +P  +  L +   + +  +    
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

Query: 141 ISGKIPPSL 149
           +    P + 
Sbjct: 316 LDQHRPVAR 324

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 18/75 (24%), Positives = 22/75 (29%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T LDL    +             L  L L  N +       L   K+L  L      IS 
Sbjct: 60  TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119

Query: 144 KIPPSLAKLKSLVFL 158
                L   K+L  L
Sbjct: 120 IDFIPLHNQKTLESL 134

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 20/75 (26%), Positives = 30/75 (40%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L  + L       L   + L++L   +  I     + L N K+L SL L +N+IS 
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 144 KIPPSLAKLKSLVFL 158
              P     + L  L
Sbjct: 144 IKLPKGFPTEKLKVL 158

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            +  LDL  ++LS  L   L  L  L+ L L  N  +    +   N  SL  L +  N  
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 142 SGKIPP-SLAKLKSLVFL 158
             ++    L  L++L  L
Sbjct: 338 RLELGTGCLENLENLREL 355

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 15/76 (19%), Positives = 28/76 (36%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
              L+   + L         +L +L +L+L +  I         +   L +L L  N + 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 143 GKIPPSLAKLKSLVFL 158
                +L+  K+L  L
Sbjct: 95  FMAETALSGPKALKHL 110

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 84  TRLDLGNSNLSG---RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
             L+L  ++      +    L  L  L+ L L   ++         +LK +  +DL +N 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 141 ISGKIPPSLAKLKSLV 156
           ++     +L+ LK + 
Sbjct: 512 LTSSSIEALSHLKGIY 527

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 16/75 (21%), Positives = 26/75 (34%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L    + +S      L   + L+ L L  N+I      +    + L  LD  NN I  
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

Query: 144 KIPPSLAKLKSLVFL 158
                ++ L+    L
Sbjct: 168 LSKEDMSSLQQATNL 182

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE---LGNLKSLISLDLYNNN 140
             L+L +S L          L  LQ+L L  N+       +   L  L  L  L L   +
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 141 ISGKIPPSLAKLKSLVFL 158
           +S     +   LK +  +
Sbjct: 488 LSSIDQHAFTSLKMMNHV 505

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             LDL  + L  +        L  L+ L L  + +  +       L +L  L+L  N+  
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 143 GKI---PPSLAKLKSLVFL 158
                   SL  L  L  L
Sbjct: 463 KGNIQKTNSLQTLGRLEIL 481

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 84  TRLDLGNSNL--SGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
             LDL + ++  S     +L  L HLQ L L  N               L  LDL    +
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 142 SGKIPPS-LAKLKSLVFL 158
             K   S    L  L  L
Sbjct: 413 KVKDAQSPFQNLHLLKVL 430

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 3/83 (3%)

Query: 76  TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
            C +       +  N  L+   +P        + LE   N +          L +L  LD
Sbjct: 7   KCIEKEVNKTYNCENLGLNE--IPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLD 63

Query: 136 LYNNNISGKIPPSLAKLKSLVFL 158
           L    I      +      L  L
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTL 86

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
           R+  L L   +LS         L+ + +++L  N +  +    L +LK +  L+L +N+I
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHI 535

Query: 142 SGKIPPSLAKLKSLVFL 158
           S  +P  L  L     +
Sbjct: 536 SIILPSLLPILSQQRTI 552

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
            D+ + ++S  +   L ++  ++ + L K+               L  LDL   ++S ++
Sbjct: 236 EDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL 293

Query: 146 PPSLAKLKSLVFL 158
           P  L  L +L  L
Sbjct: 294 PSGLVGLSTLKKL 306

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSL--ISLDLYNN 139
            +  L LG++++S   +P+    E L+ L+   N I      ++ +L+    +SL+L  N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 140 NISGKIPPSLAKLKSLVFL 158
           +I+G I P          L
Sbjct: 190 DIAG-IEPGAFDSAVFQSL 207

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 12/95 (12%), Positives = 24/95 (25%), Gaps = 4/95 (4%)

Query: 68  NPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELG--KLEHLQYLELYKNNIQGTIPVEL 125
           N                 L+ G +     +   L    ++ L        + +   P   
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 126 GNLK--SLISLDLYNNNISGKIPPSLAKLKSLVFL 158
             L   S+ S++L  +        +      L  L
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNI- 141
            +L L  +               L +L +  N  +  +    L NL++L  LDL +++I 
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 142 -SGKIPPSLAKLKSLVFL 158
            S      L  L  L  L
Sbjct: 364 TSDCCNLQLRNLSHLQSL 381

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            +  +DL ++ L+   +  L  L+ + YL L  N+I   +P  L  L    +++L  N +
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

Query: 142 SG 143
             
Sbjct: 560 DC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 3/80 (3%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQ-GTIPVELGNLKSLISLDLYNNN 140
           ++  LD  N+ +      ++  L+    L L  N      I     +     SL+     
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 141 ISGKIPPSLA--KLKSLVFL 158
               I   L    ++SL   
Sbjct: 214 NLLVIFKGLKNSTIQSLWLG 233

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L + N + +      +  L +L+ L +   ++       L  L SL  LD+ ++    
Sbjct: 69  KDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 144 KIPPSLAKLKSLVFL 158
            I   +  L  +  +
Sbjct: 127 SILTKINTLPKVNSI 141

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
            RL +   +++   +P L  L  L  L++  +    +I  ++  L  + S+DL  N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 144 KIPPSLAKLKSLVFL 158
            I P L  L  L  L
Sbjct: 151 DIMP-LKTLPELKSL 164

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T LD+ +S     ++ ++  L  +  ++L  N     I   L  L  L SL++  + +  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH- 172

Query: 144 KIPPSLAKLKSLVFL 158
                +     L  L
Sbjct: 173 DYRG-IEDFPKLNQL 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             +DL  +     ++P L  L  L+ L +  + +       + +   L  L  ++  I G
Sbjct: 139 NSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 19/75 (25%), Positives = 26/75 (34%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             LDL    +          L HL  L L  N IQ   P     L SL +L      ++ 
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 144 KIPPSLAKLKSLVFL 158
                + +L +L  L
Sbjct: 119 LESFPIGQLITLKKL 133

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             L +  ++     +        +L +L+L K  ++         L  L  L++ +NN+ 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 143 GKIPPSLAKLKSLVFL 158
                   +L SL  L
Sbjct: 511 FLDSSHYNQLYSLSTL 526

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 20/76 (26%), Positives = 28/76 (36%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
              +DL  + L             LQ+L+L +  I+         L  L +L L  N I 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 143 GKIPPSLAKLKSLVFL 158
              P S + L SL  L
Sbjct: 94  SFSPGSFSGLTSLENL 109

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           + L L  + +          L  L+ L   +  +       +G L +L  L++ +N I  
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 144 -KIPPSLAKLKSLVFL 158
            K+P   + L +LV +
Sbjct: 143 CKLPAYFSNLTNLVHV 158

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 9e-09
 Identities = 22/77 (28%), Positives = 26/77 (33%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            +T LDL    L          L  LQ L +  NN+          L SL +LD   N I
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 142 SGKIPPSLAKLKSLVFL 158
                      KSL F 
Sbjct: 534 ETSKGILQHFPKSLAFF 550

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             LD  +S L           LE L YL++   N +         L SL +L +  N+  
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 143 GKIPPS-LAKLKSLVFL 158
                +  A   +L FL
Sbjct: 462 DNTLSNVFANTTNLTFL 478

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 3/82 (3%)

Query: 77  CNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136
           C +          +  LS ++  ++      + ++L  N ++        N   L  LDL
Sbjct: 7   CIEVVPNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDL 63

Query: 137 YNNNISGKIPPSLAKLKSLVFL 158
               I      +   L  L  L
Sbjct: 64  SRCEIETIEDKAWHGLHHLSNL 85

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNNIS 142
             L    + L+      +G+L  L+ L +  N I    +P    NL +L+ +DL  N I 
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 143 GKIPPSLAKLKSLVFL 158
                 L  L+    +
Sbjct: 167 TITVNDLQFLRENPQV 182

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 82  RVTRLDLGNSNLS--GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
            ++ LDL  + LS  G           L++L+L  N     +      L+ L  LD  ++
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHS 409

Query: 140 NISGKIPPS-LAKLKSLVFL 158
            +      S    L+ L++L
Sbjct: 410 TLKRVTEFSAFLSLEKLLYL 429

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
           R+  L++ ++NL         +L  L  L+   N I+ +  +     KSL   +L NN++
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

Query: 142 S 142
           +
Sbjct: 558 A 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            V+ + L   ++    + ++ K    Q L + +  ++        +L  L SL L  N  
Sbjct: 286 NVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKG 340

Query: 142 SGKIPPSLAKLKSLVFL 158
           S  I      L SL +L
Sbjct: 341 S--ISFKKVALPSLSYL 355

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 74  HITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP--VELGNLKSL 131
                    +  L L  +  S  +  +   L  L YL+L +N +  +           SL
Sbjct: 321 QFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 132 ISLDLYNNNISGKIPPSLAKLKSLVFL 158
             LDL  N     +  +   L+ L  L
Sbjct: 379 RHLDLSFNGAII-MSANFMGLEELQHL 404

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLK----SLISLDLYN 138
            +L++ ++ +    +P     L +L +++L  N IQ     +L  L+      +SLD+  
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 139 NNISGKIPPSLAKLKSLVFL 158
           N I   I     +   L  L
Sbjct: 191 NPID-FIQDQAFQGIKLHEL 209

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 79  QDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138
           +  +   L +    L     P L  L  L+ L L  N    +I  +   L SL  LDL  
Sbjct: 305 KHFKWQSLSIIRCQLKQ--FPTLD-LPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSR 359

Query: 139 NNISGKIPPSLAKLKSL 155
           N +S     S + L + 
Sbjct: 360 NALSFSGCCSYSDLGTN 376

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 4/73 (5%)

Query: 88  LGNSNLSGRLVPELGKLEHLQYLELY--KNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
               NL       +  L  +   E      N      V+   L ++ ++ L   +I    
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-- 299

Query: 146 PPSLAKLKSLVFL 158
              + K      L
Sbjct: 300 LEDVPKHFKWQSL 312

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 2/77 (2%)

Query: 79  QDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138
            D  +    L  +N     + +   L ++  + L   +I      ++       SL +  
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIR 316

Query: 139 NNISGKIPPSLAKLKSL 155
             +       L  LKSL
Sbjct: 317 CQLKQFPTLDLPFLKSL 333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L++G++ +S   +  L  L  L  L L  N +       +G L +L +L L  N+I+ 
Sbjct: 268 KMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 144 KIPPSLAKLKSLVFL 158
             P  LA L  +   
Sbjct: 326 IRP--LASLSKMDSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L+L  + ++   +  L  L  L  L +  N I  T    L NL +L  L L  +NIS 
Sbjct: 69  EYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD 124

Query: 144 KIPPSLAKLKSLVFL 158
                LA L  +  L
Sbjct: 125 --ISPLANLTKMYSL 137

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L  + +    +  L  L  L Y   Y N I    P  + N+  L SL + NN I+ 
Sbjct: 180 YSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235

Query: 144 KIPPSLAKLKSLVFL 158
                LA L  L +L
Sbjct: 236 --LSPLANLSQLTWL 248

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 6e-09
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L +  S +    V  +  L  L  L L  N I+   P  L +L SL     Y N I+ 
Sbjct: 158 NYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

Query: 144 KIPPSLAKLKSLVFL 158
                +A +  L  L
Sbjct: 214 --ITPVANMTRLNSL 226

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 7e-09
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L   N+S   +  L  L  +  L L  N+    +   L N+  L  L +  + +  
Sbjct: 113 RELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK- 168

Query: 144 KIPPSLAKLKSLVFL 158
            + P +A L  L  L
Sbjct: 169 DVTP-IANLTDLYSL 182

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 5e-08
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L +GN+ ++   +  L  L  L +LE+  N I  +    + +L  L  L++ +N IS 
Sbjct: 224 NSLKIGNNKITD--LSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD 279

Query: 144 KIPPSLAKLKSLVFL 158
                L  L  L  L
Sbjct: 280 --ISVLNNLSQLNSL 292

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 6e-08
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             R  L  ++++   V    +LE +  L +    +  +I   +  L +L  L+L  N I+
Sbjct: 24  GIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQIT 79

Query: 143 GKIPPSLAKLKSLVFL 158
              P  L+ L  L  L
Sbjct: 80  DISP--LSNLVKLTNL 93

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             L L N+ L    +  +G L +L  L L +N+I    P  L +L  + S D  N  I 
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L    + ++   +     L       L K ++   +      L+S+  L +    ++ 
Sbjct: 3   ATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS 58

Query: 144 KIPPSLAKLKSLVFL 158
                +  L +L +L
Sbjct: 59  --IQGIEYLTNLEYL 71

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 1e-09
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 73  FHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI 132
             +   +   V  L L + +L+  ++  L +L  + +L+L  N ++  +P  L  L+ L 
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489

Query: 133 SLDLYNNNISGKIPPSLAKLKSLVFL 158
            L   +N +   +   +A L  L  L
Sbjct: 490 VLQASDNALE-NVDG-VANLPRLQEL 513

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            VT LDL ++ L   L P L  L  L+ L+   N ++  +   + NL  L  L L NN +
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRL 520

Query: 142 SG-KIPPSLAKLKSLVFL 158
                   L     LV L
Sbjct: 521 QQSAAIQPLVSCPRLVLL 538

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 8e-06
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNN 140
            +  L   ++ L    V  +  L  LQ L L  N +Q       L +   L+ L+L  N+
Sbjct: 487 CLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

Query: 141 ISGKIPPSLAKLKSL 155
           +  +      +L  +
Sbjct: 545 LC-QEEGIQERLAEM 558

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
           NR     + +S+L   L        +++ L+L  N +      +L     L  L+L +N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 141 ISGKIPPSLAKLKSLVFL 158
           +       L  L +L  L
Sbjct: 70  LYE--TLDLESLSTLRTL 85

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 7e-07
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             LDL ++ L+  + PE      + ++ L  N +   I   L   ++L   DL  N    
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 144 KIPPSL 149
                 
Sbjct: 252 GTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L+L ++ L      +L  L  L+ L+L  N +Q     EL    S+ +L   NNNIS 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 144 KIPPSLAKLKSL 155
                    K++
Sbjct: 114 VSCSRGQGKKNI 125

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 84  TRLDLGNSNLSGRLVPEL-GKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             LDL  + +      EL    + L++L L  N I   +  ++     L +LDL +N ++
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA 204

Query: 143 GKIPPSLAKLKSLVFL 158
             + P       + ++
Sbjct: 205 -FMGPEFQSAAGVTWI 219

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 9/55 (16%), Positives = 21/55 (38%)

Query: 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
               +  ++  ++++  +     +  ++  LDL  N +S      LA    L  L
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNNIS 142
             + L N+ ++     + G    +QYL+L  N I          +  +L  L+L  N I 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 143 GKIPPS--LAKLKSL 155
             +      AKLK+L
Sbjct: 183 -DVKGQVVFAKLKTL 196

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            +  L   N+N+S   V    + +  + + L  N I     ++ G    +  LDL  N I
Sbjct: 100 SIETLHAANNNISR--VSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 142 SG-KIPPSLAKLKSLVFL 158
                    A   +L  L
Sbjct: 157 DTVNFAELAASSDTLEHL 174

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T+++  N+ L+   +  L  L  L  + +  N I    P  L NL +L  L L+NN I+ 
Sbjct: 71  TQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD 126

Query: 144 KIPPSLAKLKSLVFL 158
                L  L +L  L
Sbjct: 127 --IDPLKNLTNLNRL 139

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             + + N+ ++   +  L  L +L  L L+ N I    P  L NL +L  L+L +N IS 
Sbjct: 93  VDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD 148

Query: 144 KIPPSLAKLKSLVFL 158
               +L+ L SL  L
Sbjct: 149 --ISALSGLTSLQQL 161

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             +  LG +N++         L+ +  L+  +  I       +  L +L  ++  NN ++
Sbjct: 26  KMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLT 81

Query: 143 GKIPPSLAKLKSLVFL 158
              P  L  L  LV +
Sbjct: 82  DITP--LKNLTKLVDI 95

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T L LG + +S   +  L  L  L  LEL +N ++   P  + NLK+L  L LY NNIS 
Sbjct: 268 TELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 144 KIPPSLAKLKSLVFL 158
             P  ++ L  L  L
Sbjct: 324 ISP--VSSLTKLQRL 336

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L  + L    +  L  L +L  L+L  N I    P  L  L  L  L L  N IS 
Sbjct: 224 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

Query: 144 KIPPSLAKLKSLVFL 158
                LA L +L  L
Sbjct: 280 --ISPLAGLTALTNL 292

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 4e-08
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L   N+ +S   +  LG L +L  L L  N +       L +L +L  LDL NN IS 
Sbjct: 202 ESLIATNNQISD--ITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISN 257

Query: 144 KIPPSLAKLKSLVFL 158
             P  L+ L  L  L
Sbjct: 258 LAP--LSGLTKLTEL 270

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T L L  +N+S   +  +  L  LQ L  Y N +  +    L NL ++  L   +N IS 
Sbjct: 312 TYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISD 367

Query: 144 KIPPSLAKLKSLVFL 158
             P  LA L  +  L
Sbjct: 368 LTP--LANLTRITQL 380

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
            RL+L ++ +S   +  L  L  LQ L    N +    P  L NL +L  LD+ +N +S 
Sbjct: 137 NRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD 191

Query: 144 KIPPSLAKLKSLVFL 158
                LAKL +L  L
Sbjct: 192 --ISVLAKLTNLESL 204

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
            +L  GN       +  L  L  L+ L++  N +  +    L  L +L SL   NN IS 
Sbjct: 159 QQLSFGNQVTD---LKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISD 213

Query: 144 KIPPSLAKLKSLVFL 158
             P  L  L +L  L
Sbjct: 214 ITP--LGILTNLDEL 226

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 4/58 (6%)

Query: 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
              L       L K N+  T+     +L  + +L      I       +  L +L  +
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQI 73

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 4/75 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L  G++ +S   +  L  L  +  L L              N+    ++      +  
Sbjct: 356 NWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI- 412

Query: 144 KIPPSLAKLKSLVFL 158
             P +++   S    
Sbjct: 413 -APATISDGGSYTEP 426

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
           NR     + +S+L   L        +++ L+L  N +      +L     L  L+L +N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 141 ISGKIPPSLAKLKSLVFL 158
           +       L  L +L  L
Sbjct: 70  LYE--TLDLESLSTLRTL 85

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             LDL ++ L+  + PE      + ++ L  N +   I   L   ++L   DL  N    
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 144 KIPPSL 149
                 
Sbjct: 252 GTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 84  TRLDLGNSNLSGRLVPEL-GKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             LDL  + +      EL    + L++L L  N I   +  ++     L +LDL +N ++
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA 204

Query: 143 GKIPPSLAKLKSLVFL 158
             + P       + ++
Sbjct: 205 -FMGPEFQSAAGVTWI 219

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L+L ++ L      +L  L  L+ L+L  N +Q     EL    S+ +L   NNNIS 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 144 KIPPS-LAKLKSL 155
           ++  S     K++
Sbjct: 113 RVSCSRGQGKKNI 125

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 9/55 (16%), Positives = 21/55 (38%)

Query: 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
               +  ++  ++++  +     +  ++  LDL  N +S      LA    L  L
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNNIS 142
             + L N+ ++     + G    +QYL+L  N I          +  +L  L+L  N I 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 143 GKIPPS--LAKLKSL 155
             +      AKLK+L
Sbjct: 183 -DVKGQVVFAKLKTL 196

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            +  L   N+N+S   V    + +  + + L  N I     ++ G    +  LDL  N I
Sbjct: 100 SIETLHAANNNISR--VS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 142 SG-KIPPSLAKLKSLVFL 158
                    A   +L  L
Sbjct: 157 DTVNFAELAASSDTLEHL 174

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 8e-09
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI-S 142
           + L L  + +    +     L  LQ L   + N+       +G+LK+L  L++ +N I S
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 143 GKIPPSLAKLKSLVFL 158
            K+P   + L +L  L
Sbjct: 139 FKLPEYFSNLTNLEHL 154

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 20/75 (26%), Positives = 25/75 (33%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             LDL    +          L HL  L L  N IQ         L SL  L     N++ 
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 144 KIPPSLAKLKSLVFL 158
                +  LK+L  L
Sbjct: 115 LENFPIGHLKTLKEL 129

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             L +  ++     +P+   +L +L +L+L +  ++   P    +L SL  L++ +N + 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

Query: 143 GKIPPSLAKLKSLVFL 158
                   +L SL  +
Sbjct: 508 SVPDGIFDRLTSLQKI 523

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 20/76 (26%), Positives = 27/76 (35%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
              LDL  + L             LQ L+L +  IQ        +L  L +L L  N I 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 143 GKIPPSLAKLKSLVFL 158
                + + L SL  L
Sbjct: 90  SLALGAFSGLSSLQKL 105

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQ-GTIPVELGNLKSLISLDLYNNNIS 142
            +L    +NL+      +G L+ L+ L +  N IQ   +P    NL +L  LDL +N I 
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 143 GKIPPSLAKLKSLVFL 158
                 L  L  +  L
Sbjct: 163 SIYCTDLRVLHQMPLL 178

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 84  TRLDLGNSNLSGRLVPELG---KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
             LD  +SNL    + E      L +L YL++   + +         L SL  L +  N+
Sbjct: 399 EHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 141 ISGKIPP-SLAKLKSLVFL 158
                 P    +L++L FL
Sbjct: 457 FQENFLPDIFTELRNLTFL 475

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 84  TRLDLGNSNLS--GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
             LDL  + LS  G           L+YL+L  N +  T+      L+ L  LD  ++N+
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 408

Query: 142 SGKIPPS-LAKLKSLVFL 158
                 S    L++L++L
Sbjct: 409 KQMSEFSVFLSLRNLIYL 426

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 3/82 (3%)

Query: 77  CNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136
           C +            N     +P+       + L+L  N ++        +   L  LDL
Sbjct: 3   CVEVVPNITYQCMELNFYK--IPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 137 YNNNISGKIPPSLAKLKSLVFL 158
               I      +   L  L  L
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTL 81

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 84  TRLDLGNSNL-SGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSL----ISLDLYN 138
             L++ ++ + S +L      L +L++L+L  N IQ     +L  L  +    +SLDL  
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 139 NNISGKIPPSLAKLKSLVFL 158
           N ++  I P   K   L  L
Sbjct: 187 NPMN-FIQPGAFKEIRLHKL 205

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 6e-08
 Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             + +L   +++        +L  +  +    ++I+ ++   +  L ++  L L  N ++
Sbjct: 23  TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT 78

Query: 143 GKIPPSLAKLKSLVFL 158
             I P L  LK+L +L
Sbjct: 79  -DIKP-LTNLKNLGWL 92

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L ++ +S   +  L  L  L+ L L  N I       L  L  L +L L +N IS 
Sbjct: 112 KSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS- 166

Query: 144 KIPPSLAKLKSLVFL 158
            I P LA L  L  L
Sbjct: 167 DIVP-LAGLTKLQNL 180

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T+L L  + L+   +  L  L++L +L L +N I+      L +LK L SL L +N IS 
Sbjct: 68  TKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS- 122

Query: 144 KIPPSLAKLKSLVFL 158
            I   L  L  L  L
Sbjct: 123 DING-LVHLPQLESL 136

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 6e-06
 Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
                      L K ++   +      L S+  +   N++I   +   +  L ++  L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 70

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L ++ +S   +  L  L  LQ L L KN+I  +    L  LK+L  L+L++     
Sbjct: 156 DTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLN 211

Query: 144 KIPPSLAKLKSL 155
           K     + L   
Sbjct: 212 KPINHQSNLVVP 223

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
           N    L++G S L+  L   L    H+  L +  NN+  ++P     L++L   ++  N 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTL---EVSGNQ 92

Query: 141 ISGKIPPSLAKLKSLVFL 158
           ++  +P     L  L   
Sbjct: 93  LT-SLPVLPPGLLELSIF 109

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
             +T L + ++NL+   +P L     L+ LE+  N +  ++PV    L  L        +
Sbjct: 61  AHITTLVIPDNNLTS--LPAL--PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 141 ISGKIPPSLAKL 152
           +   +P  L KL
Sbjct: 116 LP-ALPSGLCKL 126

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L +  + L+   +P L     L  L +Y+N +   +P  L +L S  +++L  N +S 
Sbjct: 244 KELMVSGNRLTS--LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

Query: 144 KIPPSLAKLKSLVFL 158
           +   +L ++ S    
Sbjct: 299 RTLQALREITSAPGY 313

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
            +L   N+ L+   +P L     LQ L +  N +  ++P     L     L  YNN ++ 
Sbjct: 164 CKLWAYNNQLTS--LPML--PSGLQELSVSDNQLA-SLPTLPSELY---KLWAYNNRLT- 214

Query: 144 KIPPSLAKLKSL 155
            +P   + LK L
Sbjct: 215 SLPALPSGLKEL 226

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 37.6 bits (87), Expect = 9e-04
 Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
                 L + ++ +  T+P  L     + +L + +NN++  +P    +L++L
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELRTL 86

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 76  TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
           +C+ D R+        NL+   VP++  L   + L L  N I+         L+ L  L+
Sbjct: 1   SCSFDGRI--AFYRFCNLTQ--VPQV--LNTTERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 136 LYNNNISGKIPP-SLAKLKSLVFL 158
           L +      I   +   L +L  L
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRIL 78

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 16/76 (21%), Positives = 27/76 (35%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
           V  LDL +  +          L+ L+ L L  N I          L +L  L+L  N + 
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 143 GKIPPSLAKLKSLVFL 158
                +   L  + ++
Sbjct: 328 ELYSSNFYGLPKVAYI 343

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             L+LG+      +  E    L +L+ L+L  + I    P     L  L  L LY   +S
Sbjct: 51  QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110

Query: 143 GKIPPS--LAKLKSLVFL 158
             +        LK+L  L
Sbjct: 111 DAVLKDGYFRNLKALTRL 128

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNN 140
             L L    LS  ++ +     L+ L  L+L KN I+   +    G L SL S+D  +N 
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159

Query: 141 ISGKIPPSLAKLKSL 155
           I       L  L+  
Sbjct: 160 IFLVCEHELEPLQGK 174

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 16/77 (20%), Positives = 30/77 (38%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            +  L+L  + ++         L++LQ L L  N +          L  +  +DL  N+I
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 142 SGKIPPSLAKLKSLVFL 158
           +     +   L+ L  L
Sbjct: 351 AIIQDQTFKFLEKLQTL 367

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 84  TRLDLGNSNLSGRLVPEL-GKLEHLQYLELYKNNIQGTIPVEL-----GNLKSLISLDLY 137
             L L  +  S     +   +   L+ L L +N +Q     EL       L  L  L L 
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488

Query: 138 NNNISGKIPPSLAKLKSLVFL 158
           +N ++   P   + L +L  L
Sbjct: 489 HNYLNSLPPGVFSHLTALRGL 509

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 76  TCNQDNRVTRLDLGNSNLSGRLVPEL-----GKLEHLQYLELYKNNIQGTIPVELGNLKS 130
           T +++  + +L LG + L      EL       L HLQ L L  N +    P    +L +
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 131 LISLDLYNNNIS----GKIPPSLAKL 152
           L  L L +N ++      +P +L  L
Sbjct: 506 LRGLSLNSNRLTVLSHNDLPANLEIL 531

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEH--LQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138
           + +     G  N+          L    +++L+L    +          LK L  L+L  
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 139 NNISGKIPPSLAKLKSLVFL 158
           N I+     +   L +L  L
Sbjct: 300 NKINKIADEAFYGLDNLQVL 319

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 56  DNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN 115
           +N+LQ    T +    +  ++      +  L L ++ L+         L  L+ L L  N
Sbjct: 460 ENMLQLAWETELCWDVFEGLS-----HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514

Query: 116 NIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
            +   +        +L  LD+  N +    P     L  L   
Sbjct: 515 RLT-VLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVLDIT 555

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 10/83 (12%)

Query: 80  DNRVTRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDL 136
            +    LDL ++NLS RL  E    +L +L  L L  N++   I  E    + +L  LDL
Sbjct: 38  PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 137 YNNNISGKIPP----SLAKLKSL 155
            +N++   +       L  L+ L
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVL 117

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNN 140
             LDL +++L    + E     L+ L+ L LY N+I   +      ++  L  L L  N 
Sbjct: 91  RYLDLSSNHLHT--LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ 147

Query: 141 ISGKIPP----SLAKLKSLVFL 158
           IS + P        KL  L+ L
Sbjct: 148 IS-RFPVELIKDGNKLPKLMLL 168

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVE----LGNLKSLISLDLYN 138
             L L N+++   +       +  LQ L L +N I    PVE       L  L+ LDL +
Sbjct: 115 EVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSS 172

Query: 139 NNISGKIPPSLAKLKSLV 156
           N +       L KL + V
Sbjct: 173 NKLKKLPLTDLQKLPAWV 190

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L+L   NL    +P L  L  L  L+L  N++    P     L  L  L +  + I  
Sbjct: 188 RYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ- 244

Query: 144 KIPP-SLAKLKSLVFL 158
            I   +   L+SLV +
Sbjct: 245 VIERNAFDNLQSLVEI 260

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNI 141
             L L  +++   +       L +L  LEL+ N +  TIP      L  L  L L NN I
Sbjct: 91  EILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPI 148

Query: 142 SGKIPPSL-AKLKSLVFL 158
              IP     ++ SL  L
Sbjct: 149 E-SIPSYAFNRIPSLRRL 165

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNN 140
               L+L  + +    V     L HL+ L+L +N+I+ TI +     L +L +L+L++N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 141 ISGKIPP-SLAKLKSLVFL 158
           ++  IP  +   L  L  L
Sbjct: 124 LT-TIPNGAFVYLSKLKEL 141

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 77  CNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136
           C+  N+ +++     NL    VP+ G   + + L L++N IQ        +L+ L  L L
Sbjct: 39  CSCSNQFSKVICVRKNLRE--VPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQL 95

Query: 137 YNNNISGKIPP-SLAKLKSLVFL 158
             N+I   I   +   L +L  L
Sbjct: 96  SRNHIR-TIEIGAFNGLANLNTL 117

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 84  TRLDLGNSNLSGRLVPEL-GKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNI 141
             L L N+ +   +      ++  L+ L+L +      I       L +L  L+L   N+
Sbjct: 139 KELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

Query: 142 SGKIPPSLAKLKSLVFL 158
                P+L  L  L  L
Sbjct: 198 RE--IPNLTPLIKLDEL 212

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 82  RVTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNN 139
           ++  LDL  ++LS  + P     L HLQ L + ++ IQ  I      NL+SL+ ++L +N
Sbjct: 208 KLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHN 265

Query: 140 NISGKIPPS-LAKLKSLVFL 158
           N++  +P      L  L  +
Sbjct: 266 NLT-LLPHDLFTPLHHLERI 284

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 74  HITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLIS 133
            +    D +   L+L N  LS   +PEL    HL+ L    N++   +P    +LKSL+ 
Sbjct: 64  RLRDCLDRQAHELELNNLGLSS--LPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLV 118

Query: 134 LDLYNNNISGKIPPSLAKL 152
            +     +S  +PP L  L
Sbjct: 119 DNNNLKALSD-LPPLLEYL 136

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 21/93 (22%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG------------------TIPVEL 125
             +  GN+ L    +PEL  L  L  +    N+++                       EL
Sbjct: 176 EFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPEL 233

Query: 126 GNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
            NL  L ++   NN +   +P     L++L   
Sbjct: 234 QNLPFLTTIYADNNLLK-TLPDLPPSLEALNVR 265

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 23/92 (25%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV-------------------E 124
             L + N+ L    +PEL     L+ +++  N+++  +P                    E
Sbjct: 134 EYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPE 190

Query: 125 LGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156
           L NL  L ++   NN++  K+P     L+S+V
Sbjct: 191 LQNLPFLTAIYADNNSLK-KLPDLPLSLESIV 221

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 18/88 (20%)

Query: 84  TRLDLGNSNLSGRLVPELGKL-------------EHLQYLELYKNNIQGTIPVELGNLKS 130
           T      S       P  G+                   LEL    +  ++P    +L+S
Sbjct: 37  TEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHLES 95

Query: 131 LISLDLYNNNISGKIPPSLAKLKSLVFL 158
           L       N+++ ++P     LKSL+  
Sbjct: 96  L---VASCNSLT-ELPELPQSLKSLLVD 119

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 15/83 (18%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNL-------------KSLI 132
               +SNL+  +  E   ++         +  +   P   G               +   
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 133 SLDLYNNNISGKIPPSLAKLKSL 155
            L+L N  +S  +P     L+SL
Sbjct: 75  ELELNNLGLS-SLPELPPHLESL 96

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 17/87 (19%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV---------------ELGNL 128
             L    ++L+  L      L+ L         +    P+               EL N 
Sbjct: 94  ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 152

Query: 129 KSLISLDLYNNNISGKIPPSLAKLKSL 155
             L  +D+ NN++  K+P     L+ +
Sbjct: 153 SFLKIIDVDNNSLK-KLPDLPPSLEFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 99  PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           P       LQ    + +N+   +PVE  N+KS        +      PP   + + +   
Sbjct: 5   PRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 9/109 (8%)

Query: 50  RSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRL--DLGNSNLSGRLVPEL-GKLEH 106
            +L+  DN L        +  T+  ++ N  + ++ L  +L   N S   +  L      
Sbjct: 260 EALNVRDNYLTDLPELPQS-LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS 318

Query: 107 LQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
           L+ L +  N +   +P     L+ L       N+++ ++P     LK L
Sbjct: 319 LEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPELPQNLKQL 362

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 22/88 (25%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-------------------TIPVE 124
             +  GN+ L    +PEL  L  L  +    N ++                     +P  
Sbjct: 218 ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL 275

Query: 125 LGNLKSLISLDLYNNNISGKIPPSLAKL 152
             +L  L   +   + +S ++PP+L  L
Sbjct: 276 PQSLTFLDVSENIFSGLS-ELPPNLYYL 302

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 4e-07
 Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 61/194 (31%)

Query: 11  WLSVCITFSVSLIIIIIGSSSLVAVASGNSEGDALY-----------ALRRSLSDP---- 55
           WL++    S   ++ ++         +  S  D               LRR L       
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 56  -----DNVLQSWDPTLVNPCTWFHITCNQDNRV---TRLDLGNSN-LSG------RLVPE 100
                 NV    +    N    F+++C    ++   TR     ++ LS        L   
Sbjct: 246 CLLVLLNV---QNAKAWNA---FNLSC----KILLTTR-FKQVTDFLSAATTTHISLDHH 294

Query: 101 LGKLEHLQYLEL---YKNNIQGTIPVE--LGN--LKSLIS------LDLYNN-------N 140
              L   +   L   Y +     +P E    N    S+I+      L  ++N        
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 141 ISGKIPPSLAKLKS 154
           ++  I  SL  L+ 
Sbjct: 355 LTTIIESSLNVLEP 368

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 32/116 (27%)

Query: 43  DALYALRRSLSDPDNVLQSWDP-TLVNPCT---WF-HI-----TCNQDNRVTR-----LD 87
           +  YAL RS+ D  N+ +++D   L+ P     ++ HI           R+T      LD
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 88  LG-----------NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI 132
                          N SG ++        LQ L+ YK  I    P     + +++
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNT------LQQLKFYKPYICDNDPKYERLVNAIL 549

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
            RLDLG       +       L +L+YL L   NI+  +P  L  L  L  L++  N+  
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP 231

Query: 143 GKIPP-SLAKLKSLVFL 158
            +I P S   L SL  L
Sbjct: 232 -EIRPGSFHGLSSLKKL 247

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 77  CNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136
           C+  N+ +++      LS   VP+ G   + +YL L +NNIQ        +L  L  L L
Sbjct: 50  CSCSNQFSKVVCTRRGLSE--VPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQL 106

Query: 137 YNNNISGKIPP-SLAKLKSLVFL 158
             N+I  +I   +   L SL  L
Sbjct: 107 GRNSIR-QIEVGAFNGLASLNTL 128

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNN 140
               L+L  +N+          L HL+ L+L +N+I+  I V     L SL +L+L++N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 141 ISGKIPP-SLAKLKSLVFL 158
           ++  IP  +   L  L  L
Sbjct: 135 LT-VIPSGAFEYLSKLREL 152

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 82  RVTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNN 139
            +  L LG +++  ++       L  L  LEL+ N +   IP      L  L  L L NN
Sbjct: 100 HLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNN 157

Query: 140 NISGKIPP-SLAKLKSLVFL 158
            I   IP  +  ++ SL+ L
Sbjct: 158 PIE-SIPSYAFNRVPSLMRL 176

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNN 140
             L+L ++ L+  ++P      L  L+ L L  N I+ +IP      + SL+ LDL    
Sbjct: 126 NTLELFDNWLT--VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182

Query: 141 ISGKIPP-SLAKLKSLVFL 158
               I   +   L +L +L
Sbjct: 183 KLEYISEGAFEGLFNLKYL 201

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 82  RVTRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYN 138
            +  L++  ++     +       L  L+ L +  + +   I       L SL+ L+L +
Sbjct: 219 GLEELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAH 275

Query: 139 NNISGKIPPS-LAKLKSLVFL 158
           NN+S  +P      L+ LV L
Sbjct: 276 NNLS-SLPHDLFTPLRYLVEL 295

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             ++  G SN++         L+ +  L  +   +  TI   +  L +LI L+L +N I+
Sbjct: 21  AIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT 76

Query: 143 GKIPPSLAKLKSLVFL 158
             + P L  L  +  L
Sbjct: 77  -DLAP-LKNLTKITEL 90

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             LDL ++ ++   V  L  L +LQ L L  N I    P  L  L +L  L + N  +S 
Sbjct: 110 KTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS- 164

Query: 144 KIPPSLAKLKSLVFL 158
            + P LA L  L  L
Sbjct: 165 DLTP-LANLSKLTTL 178

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L  + ++   +  L  L +LQYL +    +    P  L NL  L +L   +N IS 
Sbjct: 132 QVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS- 186

Query: 144 KIPPSLAKLKSLVFL 158
            I P LA L +L+ +
Sbjct: 187 DISP-LASLPNLIEV 200

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L+L ++ ++   +  L  L  +  LEL  N +       +  L+S+ +LDL +  I+ 
Sbjct: 66  IGLELKDNQITD--LAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD 121

Query: 144 KIPPSLAKLKSLVFL 158
             P  LA L +L  L
Sbjct: 122 VTP--LAGLSNLQVL 134

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T L   ++ +S   +  L  L +L  + L  N I    P  L N  +L  + L N  I+ 
Sbjct: 176 TTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231

Query: 144 KIPPSLAKLKSL 155
           +       L   
Sbjct: 232 QPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
              L +   +   K+N+  T+     +L  + +L  +   ++  I   +  L +L+ L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGL 68

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 9e-07
 Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             L +GN      +       L  L  LE+   +++      L +++ +  L L+ +  +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 143 GKIPPSLAKLKSLVFL 158
             +      L S+ +L
Sbjct: 186 FLLEIFADILSSVRYL 201

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNNIS 142
             LDL +++LS       G L  L+YL L  N  Q   +     NL +L +L + N    
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 143 GKIPP-SLAKLKSLVFL 158
            +I     A L SL  L
Sbjct: 137 SEIRRIDFAGLTSLNEL 153

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 16/85 (18%), Positives = 31/85 (36%)

Query: 74  HITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLIS 133
            +   +   + RL +    L   L      LE ++ + +  + +         +LKSL  
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 134 LDLYNNNISGKIPPSLAKLKSLVFL 158
           LDL  N +  +   + A   +   L
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSL 363

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNI 141
           +  LDL  + ++     +L    +LQ L L  + I  TI  +   +L SL  LDL +N++
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHL 86

Query: 142 SGKIPPS-LAKLKSLVFL 158
           S  +  S    L SL +L
Sbjct: 87  S-SLSSSWFGPLSSLKYL 103

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T LD+  +     +       E +++L L    I+    V+    ++L  LD+ NNN+  
Sbjct: 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLD- 444

Query: 144 KIPPSLAKLKSL 155
                L +L+ L
Sbjct: 445 SFSLFLPRLQEL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTI---PVELGNLKSLISLDLYN 138
           +V R+ + NS +          L+ L++L+L +N +           G   SL +L L  
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 139 NNIS--GKIPPSLAKLKSLVFL 158
           N++    K    L  LK+L  L
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSL 392

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
            D  + + +   +P  G    ++ L+L  N I      +L    +L  L L ++ I+  I
Sbjct: 10  CDGRSRSFTS--IPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TI 65

Query: 146 PP-SLAKLKSLVFL 158
              +   L SL  L
Sbjct: 66  EGDAFYSLGSLEHL 79

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
           R+  L +  + L    +P+      L  +++ +N ++         L SL  + L+ N  
Sbjct: 452 RLQELYISRNKLKT--LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.8 bits (88), Expect = 9e-04
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
             +  LD+ N+NL          L  LQ L + +N ++ T+P +      L+ + +  N 
Sbjct: 431 QTLEVLDVSNNNLDS--FSL--FLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQ 484

Query: 141 ISGKIPPSLAKLKSLVFL 158
           +         +L SL  +
Sbjct: 485 LKSVPDGIFDRLTSLQKI 502

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNN 140
           R+  L++ +      + P      +L  L +   N+   +P   + +L  L  L+L  N 
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP 259

Query: 141 ISGKIPP-SLAKLKSLVFL 158
           IS  I    L +L  L  +
Sbjct: 260 IS-TIEGSMLHELLRLQEI 277

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNN 140
               LDLG + +      E     HL+ LEL +N +   +      NL +L +L L +N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 141 ISGKIPP-SLAKLKSLVFL 158
           +   IP      L +L  L
Sbjct: 92  LK-LIPLGVFTGLSNLTKL 109

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 17/75 (22%), Positives = 25/75 (33%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
            +L L   NL+      L  L  L  L L   NI          L  L  L++ +     
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 144 KIPPSLAKLKSLVFL 158
            + P+     +L  L
Sbjct: 215 TMTPNCLYGLNLTSL 229

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNIS 142
           T+LD+  + +   L      L +L+ LE+  N++   I       L SL  L L   N++
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT 165

Query: 143 GKIPP-SLAKLKSLVFL 158
             IP  +L+ L  L+ L
Sbjct: 166 -SIPTEALSHLHGLIVL 181

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNIS 142
             L+L  + +S         L +L+ L L  N ++  IP+     L +L  LD+  N I 
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV 117

Query: 143 GKIPP-SLAKLKSLVFL 158
             +       L +L  L
Sbjct: 118 -ILLDYMFQDLYNLKSL 133

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L + N++        +L  L+ LE+       T+        +L SL + + N++ 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237

Query: 144 KIPP-SLAKLKSLVFL 158
            +P  ++  L  L FL
Sbjct: 238 AVPYLAVRHLVYLRFL 253

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNN 140
             L+L  + +S   +    L +L  LQ ++L    +   +       L  L  L++  N 
Sbjct: 251 RFLNLSYNPIS--TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQ 307

Query: 141 ISGKIPPSL-AKLKSLVFL 158
           ++  +  S+   + +L  L
Sbjct: 308 LT-TLEESVFHSVGNLETL 325

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 76  TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
            C+  +R   +           VPE G     + L+L KN I+     E  +   L  L+
Sbjct: 8   ECSAQDRA--VLCHRKRFVA--VPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELE 62

Query: 136 LYNNNISGKIPP-SLAKLKSLVFL 158
           L  N +S  + P +   L +L  L
Sbjct: 63  LNENIVS-AVEPGAFNNLFNLRTL 85

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNI--QGTIPVELGNLKSLISLDLYNNN 140
            TRL+L ++ L         KL  L  L L  N +  +G          SL  LDL  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 141 ISGKIPPSLAKLKSLVFL 158
           +   +  +   L+ L  L
Sbjct: 90  VI-TMSSNFLGLEQLEHL 106

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 84  TRLDLGNSNLSGRLVPELG---KLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNN 139
             LD  +SNL    + E      L +L YL++   + +          L SL  L +  N
Sbjct: 104 EHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGN 160

Query: 140 NISGKIPP-SLAKLKSLVFL 158
           +      P    +L++L FL
Sbjct: 161 SFQENFLPDIFTELRNLTFL 180

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNI 141
             L +  ++     +P+   +L +L +L+L +  ++  +      +L SL  L++ +NN 
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNF 211

Query: 142 SGKIPPS-LAKLKSLVFL 158
              +       L SL  L
Sbjct: 212 F-SLDTFPYKCLNSLQVL 228

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNN 140
            +  LDL  + +   +      LE L++L+   +N++      +  +L++LI LD+ + +
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 141 ISGKIPP-SLAKLKSLVFL 158
                       L SL  L
Sbjct: 138 TR-VAFNGIFNGLSSLEVL 155

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T +   +  L+   VP  G       LEL  N +Q         L  L  L L +N +S 
Sbjct: 10  TEIRCNSKGLTS--VPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 144 KIPPSLA--KLKSLVFL 158
           K   S +     SL +L
Sbjct: 67  KGCCSQSDFGTTSLKYL 83

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 18/68 (26%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
           T LDL    L    +       L  LQ L +  NN           L SL  LD   N+I
Sbjct: 178 TFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

Query: 142 SGKIPPSL 149
                   
Sbjct: 236 M-TSKKQE 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             + +L   +++        +L  +  +    ++I+ ++   +  L ++  L L  N ++
Sbjct: 26  TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT 81

Query: 143 GKIPPSLAKLKSLVFL 158
             I P LA LK+L +L
Sbjct: 82  -DIKP-LANLKNLGWL 95

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L ++ +S   +  L  L  L+ L L  N I       L  L  L +L L +N IS 
Sbjct: 115 KSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS- 169

Query: 144 KIPPSLAKLKSLVFL 158
            I P LA L  L  L
Sbjct: 170 DIVP-LAGLTKLQNL 183

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T+L L  + L+   +  L  L++L +L L +N ++      L +LK L SL L +N IS 
Sbjct: 71  TKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS- 125

Query: 144 KIPPSLAKLKSLVFL 158
            I   L  L  L  L
Sbjct: 126 DING-LVHLPQLESL 139

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
                      L K ++   +      L S+  +   N++I   +   +  L ++  L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 73

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L ++ +S   +  L  L  LQ L L KN+I       L  LK+L  L+L++     
Sbjct: 159 DTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLN 214

Query: 144 KIPPSLAKLKSL 155
           K     + L   
Sbjct: 215 KPINHQSNLVVP 226

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 82  RVTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNN 139
            +T L + N      L    L  L  L+ L + K+ ++  +  +       L  L+L  N
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFN 90

Query: 140 NISGKIPPSLAKLKSLVFL 158
            +   +     +  SL  L
Sbjct: 91  ALE-SLSWKTVQGLSLQEL 108

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 7/85 (8%)

Query: 76  TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISL 134
             +  + +     G  +     +  L   E+L  L +        + +  L  L  L +L
Sbjct: 6   CPHGSSGLRCTRDGALDS----LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 135 DLYNNNISGKIPP-SLAKLKSLVFL 158
            +  + +   + P +      L  L
Sbjct: 62  TIVKSGLR-FVAPDAFHFTPRLSRL 85

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
            R+ L  + +S           +L  L L+ N +          L  L  LDL +N    
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 144 KIPPS-LAKLKSLVFL 158
            + P+    L  L  L
Sbjct: 95  SVDPATFHGLGRLHTL 110

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNN 140
            +T L L ++ L+         L  L+ L+L  N    ++       L  L +L L    
Sbjct: 57  NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116

Query: 141 ISGKIPP-SLAKLKSLVFL 158
           +  ++ P     L +L +L
Sbjct: 117 LQ-ELGPGLFRGLAALQYL 134

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNN 140
           T L L  + +S   VPE     L  L  L L++N +   +      +L  L++L L+ NN
Sbjct: 156 THLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANN 212

Query: 141 ISGKIPPS-LAKLKSLVFL 158
           +S  +P   LA L++L +L
Sbjct: 213 LS-ALPTEALAPLRALQYL 230

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
             L L ++ L    +P+     L +L +L L+ N I          L SL  L L+ N +
Sbjct: 132 QYLYLQDNALQ--ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 142 SGKIPP-SLAKLKSLVFL 158
           +  + P +   L  L+ L
Sbjct: 190 A-HVHPHAFRDLGRLMTL 206

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNI 141
            +LDL ++     + P     L  L  L L +  +Q  +       L +L  L L +N +
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 142 SGKIPP-SLAKLKSLVFL 158
              +P  +   L +L  L
Sbjct: 142 Q-ALPDDTFRDLGNLTHL 158

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 76  TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
            C  +            L    VP  G     Q + L+ N I           ++L  L 
Sbjct: 7   VC-YNEPKVTTSCPQQGLQA--VPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 136 LYNNNISGKIPP-SLAKLKSLVFL 158
           L++N ++ +I   +   L  L  L
Sbjct: 63  LHSNVLA-RIDAAAFTGLALLEQL 85

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
           T L L  + ++   V    L  L +L  L L  N+I       L N   L  L L NN +
Sbjct: 195 TELHLDGNKITK--VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 142 SGKIPPSLAKLKSLVFL 158
             K+P  LA  K +  +
Sbjct: 253 V-KVPGGLADHKYIQVV 268

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 81  NRVTRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138
           N++  ++LG + L    +       ++ L Y+ +   NI  TIP  L    SL  L L  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDG 201

Query: 139 NNISGKIPP-SLAKLKSLVFL 158
           N I+ K+   SL  L +L  L
Sbjct: 202 NKIT-KVDAASLKGLNNLAKL 221

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             L L N+ +S ++ P     L  L+ L L KN ++  +P ++   K+L  L ++ N I+
Sbjct: 79  HTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT 134

Query: 143 GKIPP-SLAKLKSLVFL 158
            K+       L  ++ +
Sbjct: 135 -KVRKSVFNGLNQMIVV 150

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
              LDL N+ ++     +   L++L  L L  N I    P     L  L  L L  N + 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 143 GKIPPSL-AKLKSL 155
            ++P  +   L+ L
Sbjct: 114 -ELPEKMPKTLQEL 126

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 13/84 (15%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            +L L  +++S   V    L    HL+ L L  N +   +P  L + K +  + L+NNNI
Sbjct: 219 AKLGLSFNSISA--VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

Query: 142 SGKIPPS-------LAKLKSLVFL 158
           S  I  +         K  S   +
Sbjct: 276 S-AIGSNDFCPPGYNTKKASYSGV 298

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQ-GTIPVE-LGNLKSLISLDLYNN 139
             L +  + ++   V +     L  +  +EL  N ++   I       +K L  + + + 
Sbjct: 124 QELRVHENEIT--KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 140 NISGKIPPSL-AKLKSL 155
           NI+  IP  L   L  L
Sbjct: 182 NIT-TIPQGLPPSLTEL 197

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP-SLAKLKSLVFL 158
                L+L  N I      +  NLK+L +L L NN IS KI P + A L  L  L
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERL 105

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 14/84 (16%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-------LGNLKSLISLDL 136
             L L N+ L  ++   L   +++Q + L+ NNI   I               S   + L
Sbjct: 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSL 300

Query: 137 YNNNIS-GKIPPS----LAKLKSL 155
           ++N +   +I PS    +    ++
Sbjct: 301 FSNPVQYWEIQPSTFRCVYVRAAV 324

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T+L+L  + L+   +   G L  L  L+L  N +Q ++P+    L +L  LD+  N ++ 
Sbjct: 58  TQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT- 113

Query: 144 KIPP----SLAKLKSL 155
            +P      L +L+ L
Sbjct: 114 SLPLGALRGLGELQEL 129

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T L L ++NL+      L     L  ++L  N ++  +      ++ L  L + NN +  
Sbjct: 235 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV- 291

Query: 144 KIPPSLAKLKSLVFL 158
            +      + +L  L
Sbjct: 292 ALNLYGQPIPTLKVL 306

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
            RL + N+ L   L      +  L+ L+L  N++   +         L +L L +N+I  
Sbjct: 281 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 337

Query: 144 KIPPS-LAKLKSL 155
            +  S    LK+L
Sbjct: 338 TLKLSTHHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 4/80 (5%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNN 139
           N    +   NS +       L     ++ L L    I+  I         ++  L +  N
Sbjct: 51  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN 109

Query: 140 NISGKIPPS-LAKLKSLVFL 158
            I   +PP     +  L  L
Sbjct: 110 AIR-YLPPHVFQNVPLLTVL 128

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNN 140
            +L +G + +    +P      +  L  L L +N++  ++P  +  N   L +L + NNN
Sbjct: 102 QKLYMGFNAIRY--LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN 158

Query: 141 ISGKIPPS-LAKLKSLVFL 158
           +  +I         SL  L
Sbjct: 159 LE-RIEDDTFQATTSLQNL 176

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 79  QDNRVTRLDLGN------SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI 132
             NR+T +DL        +N+S  L+  L     ++ L+   N+I     V       L 
Sbjct: 179 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV---VRGPVNVELT 235

Query: 133 SLDLYNNNISGKIPPSLAKLKSLVFL 158
            L L +NN++      L     LV +
Sbjct: 236 ILKLQHNNLTD--TAWLLNYPGLVEV 259

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 77  CNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLD 135
              D     + +           E   L + + +    + ++  +P   L + + +  L+
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 136 LYNNNISGKIPP-SLAKLKSLVFL 158
           L +  I  +I   + A   ++  L
Sbjct: 82  LNDLQIE-EIDTYAFAYAHTIQKL 104

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 84  TRLDLGNSNLSGRLVPEL-GKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNI 141
           T L L  ++LS  L   +      L  L +  NN++  I  +      SL +L L +N +
Sbjct: 126 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL 183

Query: 142 SGKIPPSLAKLKSLVFL 158
           +  +  SL  + SL   
Sbjct: 184 T-HVDLSL--IPSLFHA 197

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNIS 142
           T L L ++NL+      L     L  ++L  N ++  I       ++ L  L + NN + 
Sbjct: 229 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV 285

Query: 143 GKIPPSLAKLKSLVFL 158
             +      + +L  L
Sbjct: 286 -ALNLYGQPIPTLKVL 300

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
            RL + N+ L   L      +  L+ L+L  N++   +         L +L L +N+I  
Sbjct: 275 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 331

Query: 144 KIPPS-LAKLKSL 155
            +  S    LK+L
Sbjct: 332 TLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 81  NRVTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYN 138
           N    +   NS +  +L    L     ++ L L    I+  I         ++  L +  
Sbjct: 45  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 102

Query: 139 NNISGKIPPS-LAKLKSLVFL 158
           N I   +PP     +  L  L
Sbjct: 103 NAIR-YLPPHVFQNVPLLTVL 122

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNN 140
            +L +G + +    +P      +  L  L L +N++  ++P  +  N   L +L + NNN
Sbjct: 96  QKLYMGFNAIR--YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN 152

Query: 141 ISGKIPPS-LAKLKSLVFL 158
           +  +I         SL  L
Sbjct: 153 LE-RIEDDTFQATTSLQNL 170

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 4/85 (4%)

Query: 76  TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISL 134
               D     + +           E   L + + +    + ++  +P   L + + +  L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 74

Query: 135 DLYNNNISGKIPP-SLAKLKSLVFL 158
           +L +  I  +I   + A   ++  L
Sbjct: 75  NLNDLQIE-EIDTYAFAYAHTIQKL 98

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            V  LD  +++++   V        L  L+L  NN+       L N   L+ +DL  N +
Sbjct: 206 AVEELDASHNSINV--VRG-PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNEL 260

Query: 142 SGKIPPSLAKLKSLVFL 158
              +     K++ L  L
Sbjct: 261 EKIMYHPFVKMQRLERL 277

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 84  TRLDLGNSNLSGRLVPEL-GKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNI 141
           T L L  ++LS  L   +      L  L +  NN++  I  +      SL +L L +N +
Sbjct: 120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL 177

Query: 142 SGKIPPSLAKLKSLVFL 158
           +  +  SL  + SL   
Sbjct: 178 T-HVDLSL--IPSLFHA 191

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             LDL +++L   +     + + L+ L L  N+I  T+   L    +L +L L +N+  
Sbjct: 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 88  LGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP 147
            G +      + +   +     L+L + N+  ++P  L     +  L++  N +   +P 
Sbjct: 42  PGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPE 97

Query: 148 SLAKLKSL 155
             A L+ L
Sbjct: 98  LPASLEYL 105

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 6e-06
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 22/94 (23%)

Query: 79  QDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI------ 132
             N+ + L L   NLS  L   L     +  LE+ +N +  ++P    +L+ L       
Sbjct: 57  LINQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPASLEYLDACDNRL 112

Query: 133 -----------SLDLYNNNISGKIPPSLAKLKSL 155
                       LD+ NN ++  +P   A L+ +
Sbjct: 113 STLPELPASLKHLDVDNNQLT-MLPELPALLEYI 145

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQ----YLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
             LD+  + L   L     +  H +    +    +N I   IP  + +L    ++ L +N
Sbjct: 183 EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240

Query: 140 NISGKIPPSLAKLKSLVFL 158
            +S +I  SL++  +    
Sbjct: 241 PLSSRIRESLSQQTAQPDY 259

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             LD+ N+ L+  ++PEL     L+Y+    N +   +P    +L+ L    + NN ++ 
Sbjct: 123 KHLDVDNNQLT--MLPEL--PALLEYINADNNQLT-MLPELPTSLEVL---SVRNNQLT- 173

Query: 144 KIPPSLAKLKSL 155
            +P     L++L
Sbjct: 174 FLPELPESLEAL 185

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             ++  N+ L+  ++PEL     L+ L +  N +   +P    +L++L   D+  N +  
Sbjct: 143 EYINADNNQLT--MLPEL--PTSLEVLSVRNNQLT-FLPELPESLEAL---DVSTNLLES 194

Query: 144 KIPPSLAKLKSL 155
            +P    +    
Sbjct: 195 -LPAVPVRNHHS 205

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
           +  L   N  L+   +  L KL  L+ LEL  N + G + V      +L  L+L  N I 
Sbjct: 44  LEFLSTINVGLTS--IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

Query: 143 G-KIPPSLAKLKSLVFL 158
                  L KL++L  L
Sbjct: 102 DLSTIEPLKKLENLKSL 118

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 9/78 (11%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
             L L N+ +S   + E     L  LQ L + KN++   IP  L    SL+ L +++N I
Sbjct: 81  YALVLVNNKISK--IHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRI 135

Query: 142 SGKIPP-SLAKLKSLVFL 158
             K+P    + L+++  +
Sbjct: 136 R-KVPKGVFSGLRNMNCI 152

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 84  TRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
            RL LG++ +    +    L  L  L+ L L  N +   +P  L +LK L  + L+ NNI
Sbjct: 220 YRLGLGHNQIRM--IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

Query: 142 SGKIPPS 148
           + K+  +
Sbjct: 277 T-KVGVN 282

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNI 141
            T LDL N+++S     +   L+HL  L L  N I   I  +    L+ L  L +  N++
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL 114

Query: 142 SGKIPPSL-AKLKSL 155
             +IPP+L + L  L
Sbjct: 115 V-EIPPNLPSSLVEL 128

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 7/79 (8%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNN 140
           ++  L +  + L+G  +P+    E L  L L  N IQ  I +E L     L  L L +N 
Sbjct: 173 KLNYLRISEAKLTG--IPK-DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228

Query: 141 ISGKIPP-SLAKLKSLVFL 158
           I   I   SL+ L +L  L
Sbjct: 229 IR-MIENGSLSFLPTLREL 246

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 106 HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP-SLAKLKSLVFL 158
               L+L  N+I      +   L+ L +L L NN IS KI   + + L+ L  L
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKL 107

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 81  NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
             +T LD  NS+++   +  + KL  L  L    NNI     ++L    +L  L   +N 
Sbjct: 42  ATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNK 96

Query: 141 ISGKIPPSLAKLKSL 155
           ++      L KL  L
Sbjct: 97  LTNLDVTPLTKLTYL 111

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
            RL+   +N++     +L +   L +L+   N +     +++  L  L   D   N ++ 
Sbjct: 194 NRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTE 247

Query: 144 KIPPSLAKLKSL 155
               +L+KL +L
Sbjct: 248 LDVSTLSKLTTL 259

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T LD   +        ++     L  L+   N I     +++   K L  L+   NNI+ 
Sbjct: 151 TELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITK 205

Query: 144 KIPPSLAKLKSL 155
                  +L  L
Sbjct: 206 LDLNQNIQLTFL 217

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
           T+L   ++N++     +L +  +L YL    N +     +++  L  L  L+   N ++ 
Sbjct: 67  TKLICTSNNITT---LDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTK 120

Query: 144 KIPPSLAKLKSL 155
                   L  L
Sbjct: 121 LDVSQNPLLTYL 132

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             + +LG  +++   +    +L  +Q      +NIQ      +    +L  L L +N IS
Sbjct: 21  AVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQIS 76

Query: 143 GKIPPSLAKLKSLVFL 158
             + P L  L  L  L
Sbjct: 77  -DLSP-LKDLTKLEEL 90

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
           V   +  NSN+    +  +    +L+ L L  N I    P  L +L  L  L +  N + 
Sbjct: 43  VQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK 98

Query: 143 GKIPPSLAKLKSL 155
                  A L  L
Sbjct: 99  NLNGIPSACLSRL 111

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
              L +     L K ++  T  V    L  + + +  N+NI   +   +    +L  L
Sbjct: 15  DPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKEL 68

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 37.3 bits (87), Expect = 9e-04
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L +  + L    +  +     L  L L  N ++ T    L +LK+L  L + NN +  
Sbjct: 88  EELSVNRNRLKN--LNGIPSA-CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK- 141

Query: 144 KIPPSLAKLKSLVFL 158
            I   L  L  L  L
Sbjct: 142 SIVM-LGFLSKLEVL 155

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 17/73 (23%), Positives = 28/73 (38%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
            T L++  + +S     ++  L  L+ L +  N IQ          + L  LDL +N + 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 143 GKIPPSLAKLKSL 155
                    LK L
Sbjct: 83  KISCHPTVNLKHL 95

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELG---NLKSLISLDLYNNN 140
             LD  N+ L+  +    G L  L+ L L  N ++  +         +KSL  LD+  N+
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNS 385

Query: 141 ISGKIPPSL-AKLKSLVFL 158
           +S        +  KSL+ L
Sbjct: 386 VSYDEKKGDCSWTKSLLSL 404

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV--ELGNLKSLISLDLYNNNI 141
             LDL ++ L    +       +L++L+L  N     +P+  E GN+  L  L L   ++
Sbjct: 72  EYLDLSHNKLVK--IS-CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHL 127

Query: 142 SGKIPPSLAKLKSLVFL 158
                  +A L     L
Sbjct: 128 EKSSVLPIAHLNISKVL 144

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
           +   +   S      +    K+    +L+   N +  T+    G+L  L +L L  N + 
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 143 --GKIPPSLAKLKSLVFL 158
              KI     ++KSL  L
Sbjct: 362 ELSKIAEMTTQMKSLQQL 379

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 80  DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYN 138
             R+  LDL ++ +   +  ++ KLE LQ L +  N ++ ++P      L SL  + L+ 
Sbjct: 420 PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477

Query: 139 NN 140
           N 
Sbjct: 478 NP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 76  TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
            C+    +  L++ ++ L+  +   L     ++ L+L+ N I+ +IP ++  L++L  L+
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELN 450

Query: 136 LYNNNISGKIPP----SLAKLKSL 155
           + +N +   +P      L  L+ +
Sbjct: 451 VASNQLK-SVPDGIFDRLTSLQKI 473

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
           +  L L N  L    V  L KL  L+ LEL +N I G + +    L +L  L+L  N + 
Sbjct: 51  LEFLSLINVGLIS--VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

Query: 143 G-KIPPSLAKLKSLVFL 158
                  L KL+ L  L
Sbjct: 109 DISTLEPLKKLECLKSL 125

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNN 140
           ++ +L+L  + + G L     KL +L +L L  N ++    +E L  L+ L SLDL+N  
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

Query: 141 ISGKI---PPSLAKLKSLVFL 158
           ++            L  L +L
Sbjct: 132 VTNLNDYRESVFKLLPQLTYL 152

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNI 141
           V  +DL  ++++        +L+ LQ+L++ +      I       L SLI L L  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 142 SGKIPP----SLAKLKSL 155
             ++       LA L+ L
Sbjct: 92  L-QLETGAFNGLANLEVL 108

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT-IPVEL-GNLKSLISLDLYNNNI 141
             L L  +            L +L+ L L + N+ G  +       L SL  L L +NNI
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 142 SGKIPPSLA--KLKSLVFL 158
             KI P+     ++    L
Sbjct: 142 K-KIQPASFFLNMRRFHVL 159

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 79  QDNRVTRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLD 135
           + + V   DL  S +    + +        L+ L L +N I   I       L  L+ L+
Sbjct: 273 EASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLN 329

Query: 136 LYNNNISGKIPPSLAKLKSLVFL 158
           L  N +          L  L  L
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVL 352

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 83  VTRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNN 139
           + +L+L  + L    +       L+ L+ L+L  N+I+  +  +    L +L  L L  N
Sbjct: 325 LLKLNLSQNFLGS--IDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTN 381

Query: 140 NISGKIPPS-LAKLKSLVFL 158
            +   +P     +L SL  +
Sbjct: 382 QLK-SVPDGIFDRLTSLQKI 400

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVFL 158
              L  L+ L +  N I          L  L  L L NN++        LA LKSL +L
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNN 140
           +V  LDL N+ +   +  ++  L+ LQ L +  N ++ ++P      L SL  + L++N 
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 73  FHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI 132
           +  TC     +  L+L ++ L+G +   L     ++ L+L+ N I  +IP ++ +L++L 
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQ 476

Query: 133 SLDLYNNNISGKIPP-SLAKLKSL 155
            L++ +N +   +P     +L SL
Sbjct: 477 ELNVASNQLK-SVPDGVFDRLTSL 499

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI-S 142
             L L ++ +           + L+YL++  N +Q  I      + SL  LDL  N+   
Sbjct: 79  RVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDV 135

Query: 143 GKIPPSLAKLKSLVFL 158
             +      L  L FL
Sbjct: 136 LPVCKEFGNLTKLTFL 151

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 83  VTRLDLGNSNLSGRLVP-ELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNN 140
              L L  +++S  L   ++  L  L+ L L  N I+ ++   +    + L  LD+ +N 
Sbjct: 54  TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 141 ISGKIPPSLAKLKSLVFL 158
           +   I      + SL  L
Sbjct: 112 LQ-NISCC--PMASLRHL 126

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.5 bits (87), Expect = 9e-04
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV--ELGNLKSLISLDLYNNNI 141
             LD+ ++ L    +     +  L++L+L  N+    +PV  E GNL  L  L L     
Sbjct: 103 EYLDVSHNRLQN--IS-CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKF 158

Query: 142 SGKIPPSLAKLK 153
                  +A L 
Sbjct: 159 RQLDLLPVAHLH 170

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 11/82 (13%)

Query: 81  NRVTRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLY 137
            ++ R+DL N+ +S   +       L  L  L LY N I   +P  L   L SL  L L 
Sbjct: 56  KKLRRIDLSNNQISE--LAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLN 112

Query: 138 NNNISGKIPP----SLAKLKSL 155
            N I+  +       L  L  L
Sbjct: 113 ANKIN-CLRVDAFQDLHNLNLL 133

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 84  TRLDLGNSNLSGRLVPEL-GKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNI 141
             L L  + ++  L   L   L  LQ L L  N I   + V+   +L +L  L LY+N +
Sbjct: 83  NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140

Query: 142 SGKIPPSLAKLKSLVFL 158
                 + + L+++  +
Sbjct: 141 QTIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 83  VTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNN 140
           +T + L  + +   + P      + L+ ++L  N I   +  +    L+SL SL LY N 
Sbjct: 34  ITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 141 ISGKIPP----SLAKLKSL 155
           I+ ++P      L  L+ L
Sbjct: 92  IT-ELPKSLFEGLFSLQLL 109

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 10/77 (12%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 82  RVTRLDLGNSNLSGRLVPELGK---LEHLQYLELYKNNIQGT----IPVELGNLKSLISL 134
            +  L + ++     +V    +   L  L+ +++    +       +   +  +K L  +
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 135 DLYNNNISGKIPPSLAK 151
           ++  N +S ++   L K
Sbjct: 313 NMKYNYLSDEMKKELQK 329

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 7/84 (8%)

Query: 82  RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE----LGNLKSLISLDLY 137
            +  L +  ++       ++     L  L+L  N   G   +          +L  L L 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 138 NNN---ISGKIPPSLAKLKSLVFL 158
           N      SG      A    L  L
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGL 233

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 17/83 (20%), Positives = 23/83 (27%), Gaps = 8/83 (9%)

Query: 84  TRLDLGNSNLSGRLVPE----LGKLEHLQYLELYKNN---IQGTIPVELGNLKSLISLDL 136
           + LDL ++   G           K   LQ L L         G           L  LDL
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 137 YNNNISGKIPPSL-AKLKSLVFL 158
            +N++              L  L
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSL 258

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 84  TRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNN-- 139
             LDL  + L   L          LQ L+L +  IQ TI      +L  L +L L  N  
Sbjct: 31  KNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 140 -NISGKIPPSLAKLKSLV 156
            +++      L+ L+ LV
Sbjct: 89  QSLALGAFSGLSSLQKLV 106

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 82  RVTRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYN 138
            +  L L ++ ++   + E     L  L++L+L  N +   +       L SL  L+L  
Sbjct: 77  NLQALVLTSNGIN--TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLG 133

Query: 139 NNISGKIPPS--LAKLKSLVFL 158
           N     +  +   + L  L  L
Sbjct: 134 NPYK-TLGETSLFSHLTKLQIL 154

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 83  VTRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNN 139
              L L  ++L    +P      L ++  + +  +     +      NL  +  +++ N 
Sbjct: 33  TQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 140 NISGKIPPS-LAKLKSLVFL 158
                I P  L +L  L FL
Sbjct: 91  RNLTYIDPDALKELPLLKFL 110

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 11/81 (13%)

Query: 82  RVTRLDLGNSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYN 138
            V  + L ++ L    V       LE L+ L L  N I   +  +    L S+  L LY+
Sbjct: 82  GVNEILLTSNRLEN--VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYD 138

Query: 139 NNISGKIPP----SLAKLKSL 155
           N I+  + P    +L  L +L
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTL 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.71
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.34
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.34
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.33
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.32
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.28
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.28
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.21
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.19
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.1
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.08
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.03
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.03
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.02
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.01
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.0
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.0
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.99
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.98
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.98
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.96
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.96
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.95
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.93
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.9
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.87
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.87
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.86
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.83
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.83
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.78
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.77
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.75
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.66
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.61
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.59
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.58
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.57
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.57
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.55
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.52
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.52
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.51
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.5
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.49
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.47
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.45
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.44
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.43
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.41
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.41
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.35
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.32
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.32
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.3
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.29
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.14
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.82
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.8
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.54
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.54
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.53
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.52
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.47
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.41
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.2
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.2
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.19
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.11
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.07
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.41
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	93.83
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	93.61
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.01
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.27
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	89.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.77
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	88.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	87.45

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=1e-20  Score=144.46  Aligned_cols=121  Identities=35%  Similarity=0.632  Sum_probs=106.0

Q ss_pred             cCCchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCc--ccceeeCCC---CCEEEEEcCCCCCCc--cchhhhcCCCCCC
Q 031545           36 ASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCT--WFHITCNQD---NRVTRLDLGNSNLSG--RLVPELGKLEHLQ  108 (158)
Q Consensus        36 ~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~--~~gv~c~~~---~~l~~L~l~~n~l~~--~~p~~~~~l~~L~  108 (158)
                      .|.++|.++|++||..+.+|. .+.+|... .++|.  |.||.|+..   ++++.|++++|++.+  .+|+.+.++++|+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~-~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~   79 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCC-CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence            467889999999999998776 78899765 57888  999999864   789999999999998  8899999999999


Q ss_pred             EEeccC-CccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545          109 YLELYK-NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus       109 ~L~l~~-n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      +|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|++|
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            999995 88988899889999999999999988888888888888887754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.75  E-value=1.5e-18  Score=146.28  Aligned_cols=121  Identities=28%  Similarity=0.413  Sum_probs=94.5

Q ss_pred             hhcCCchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCCcc---chh-----------
Q 031545           34 AVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGR---LVP-----------   99 (158)
Q Consensus        34 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~~~gv~c~~~~~l~~L~l~~n~l~~~---~p~-----------   99 (158)
                      +.+..++|+++|++||+.+.+|. .+.+|... .+||.|.||.|+ .++|+.|+++++++.|.   +|+           
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~-~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l   82 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSSN-KNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL   82 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCTT-SSTTCCTT-SCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred             cccCCHHHHHHHHHHHhhCCCcc-cccCCCCC-CCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence            34446789999999999998887 89999844 689999999999 78999999999999987   554           


Q ss_pred             ------------hhcCCCCCCEEeccCCccCCCCCc--cccCCCCCCEEecccCcccccCCccc-cCCCCCCC
Q 031545          100 ------------ELGKLEHLQYLELYKNNIQGTIPV--ELGNLKSLISLDLYNNNISGKIPPSL-AKLKSLVF  157 (158)
Q Consensus       100 ------------~~~~l~~L~~L~l~~n~l~g~~p~--~~~~l~~L~~L~Ls~N~l~g~~P~~l-~~l~~L~~  157 (158)
                                  .+..+++|++|++++|.+.|.+|.  .++.+++|++|++++|.+.+.+|..+ .++++|++
T Consensus        83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  155 (768)
T 3rgz_A           83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV  155 (768)
T ss_dssp             ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred             CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence                        455667777777777777777776  77777777777777777777766654 66666664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.73  E-value=4e-18  Score=141.21  Aligned_cols=118  Identities=23%  Similarity=0.267  Sum_probs=103.6

Q ss_pred             chHHHHHHHHHHhCCCCCCC--------CCCCCCCCCCCCcc---cceeeCCCCCEEEEEcCCCCCCccchhhhcCCCCC
Q 031545           39 NSEGDALYALRRSLSDPDNV--------LQSWDPTLVNPCTW---FHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHL  107 (158)
Q Consensus        39 ~~~~~~l~~~~~~~~~~~~~--------l~~w~~~~~~~c~~---~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L  107 (158)
                      ..|++||.+++..+.++.+.        ..+|+.. .++|.|   .||.|+..++|+.|+|+++++.|.+|++++++++|
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L  107 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL  107 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccc
Confidence            46899999999998766433        2369865 789999   99999888999999999999999999999999999


Q ss_pred             CEEeccCCc-----------------------------------------------------------------------
Q 031545          108 QYLELYKNN-----------------------------------------------------------------------  116 (158)
Q Consensus       108 ~~L~l~~n~-----------------------------------------------------------------------  116 (158)
                      +.|++++|.                                                                       
T Consensus       108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~  187 (636)
T 4eco_A          108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ  187 (636)
T ss_dssp             CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTT
T ss_pred             eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhh
Confidence            999999884                                                                       


Q ss_pred             -------cCCCCCccccCCCCCCEEecccCccccc-----------------CCcccc--CCCCCCCC
Q 031545          117 -------IQGTIPVELGNLKSLISLDLYNNNISGK-----------------IPPSLA--KLKSLVFL  158 (158)
Q Consensus       117 -------l~g~~p~~~~~l~~L~~L~Ls~N~l~g~-----------------~P~~l~--~l~~L~~L  158 (158)
                             ++| +|..++++++|++|++++|.++|.                 +|+.++  ++++|++|
T Consensus       188 l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L  254 (636)
T 4eco_A          188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV  254 (636)
T ss_dssp             TTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred             hccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence                   345 888999999999999999999986                 999998  99998864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=7.9e-18  Score=143.78  Aligned_cols=117  Identities=21%  Similarity=0.271  Sum_probs=101.4

Q ss_pred             CCchHHHHHHHHHHhCCCCCCCCCCCCCCC----CCC--Ccc------------cceeeCCCCCEEEEEcCCCCCCccch
Q 031545           37 SGNSEGDALYALRRSLSDPDNVLQSWDPTL----VNP--CTW------------FHITCNQDNRVTRLDLGNSNLSGRLV   98 (158)
Q Consensus        37 ~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~----~~~--c~~------------~gv~c~~~~~l~~L~l~~n~l~~~~p   98 (158)
                      ....|..+|++||..+.+|     +|+.+.    .++  |.|            .||.|+..++|+.|+|+++++.|.+|
T Consensus       266 ~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip  340 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP  340 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEEC
T ss_pred             cchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCc
Confidence            3457999999999999776     676543    344  999            99999988999999999999999999


Q ss_pred             hhhcCCCCCCEEec-cCCccCCC---------------------------------------------------------
Q 031545           99 PELGKLEHLQYLEL-YKNNIQGT---------------------------------------------------------  120 (158)
Q Consensus        99 ~~~~~l~~L~~L~l-~~n~l~g~---------------------------------------------------------  120 (158)
                      +.++++++|+.|++ ++|.+.|.                                                         
T Consensus       341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~  420 (876)
T 4ecn_A          341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD  420 (876)
T ss_dssp             GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred             hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence            99999999999999 77765444                                                         


Q ss_pred             -------------------CCccccCCCCCCEEecccCcccc-----------------cCCcccc--CCCCCCCC
Q 031545          121 -------------------IPVELGNLKSLISLDLYNNNISG-----------------KIPPSLA--KLKSLVFL  158 (158)
Q Consensus       121 -------------------~p~~~~~l~~L~~L~Ls~N~l~g-----------------~~P~~l~--~l~~L~~L  158 (158)
                                         +|..++++++|++|+|++|.++|                 .+|+.++  ++++|++|
T Consensus       421 ~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L  496 (876)
T 4ecn_A          421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV  496 (876)
T ss_dssp             CCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred             cccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence                               88889999999999999999998                 3999888  99988764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.58  E-value=4.4e-16  Score=119.51  Aligned_cols=121  Identities=20%  Similarity=0.241  Sum_probs=101.0

Q ss_pred             hcCCchHHHHHHHHHHhC-CCCCCCCCCCC---CCCCCCCcccceeeCC---------CCCEEEEEcCCCCCCccchhhh
Q 031545           35 VASGNSEGDALYALRRSL-SDPDNVLQSWD---PTLVNPCTWFHITCNQ---------DNRVTRLDLGNSNLSGRLVPEL  101 (158)
Q Consensus        35 ~~~~~~~~~~l~~~~~~~-~~~~~~l~~w~---~~~~~~c~~~gv~c~~---------~~~l~~L~l~~n~l~~~~p~~~  101 (158)
                      .....+|..+|.+||..+ .++.+....|+   ....+.|.|.|+.|..         ..+++.|++++|++. .+|+.+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            345568999999999987 46666677884   3446899999999952         368999999999998 788888


Q ss_pred             cCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545          102 GKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus       102 ~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ..+++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..++++++|++|
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            88999999999999999 88988999999999999999998 889888888888764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=3.7e-13  Score=94.07  Aligned_cols=91  Identities=20%  Similarity=0.264  Sum_probs=77.4

Q ss_pred             CCCcccceeeCC----------CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecc
Q 031545           68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY  137 (158)
Q Consensus        68 ~~c~~~gv~c~~----------~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls  137 (158)
                      +.|.|..+.|..          ..+++.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|++|+|+
T Consensus         7 C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A            7 CSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             CEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            456777788754          2468899999999998888899999999999999999997666678999999999999


Q ss_pred             cCcccccCCccccCCCCCCCC
Q 031545          138 NNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus       138 ~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      +|.+++..|..+.++++|++|
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHI  107 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCccCEeCHHHhcCCCCCCEE
Confidence            999996656678889888754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.41  E-value=6.4e-13  Score=96.93  Aligned_cols=91  Identities=19%  Similarity=0.175  Sum_probs=69.1

Q ss_pred             CCCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEec
Q 031545           67 VNPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL  136 (158)
Q Consensus        67 ~~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~L  136 (158)
                      .+.|+|.+|.|...          .+++.|++++|.+.+..|..|..+++|+.|++++|++.+..+..|..+++|++|++
T Consensus        16 ~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           16 QCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            57899999999742          36788888888888777777888888888888888887544455677888888888


Q ss_pred             ccCcccccCCccccCCCCCCC
Q 031545          137 YNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus       137 s~N~l~g~~P~~l~~l~~L~~  157 (158)
                      ++|.+++..+..+..+++|++
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~  116 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKE  116 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCcCCccChhHhCcchhhCe
Confidence            888887554455666666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.34  E-value=1.2e-12  Score=110.53  Aligned_cols=78  Identities=36%  Similarity=0.583  Sum_probs=72.4

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ..++.|++++|.+.|.+|.+++.++.|+.|++++|+++|.+|..++.+++|+.|||++|.++|.+|..++++++|++|
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            468899999999999999999999999999999999999999999999999999999999999999999999988764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.34  E-value=3.1e-12  Score=89.43  Aligned_cols=89  Identities=28%  Similarity=0.325  Sum_probs=49.3

Q ss_pred             CCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecc
Q 031545           68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY  137 (158)
Q Consensus        68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls  137 (158)
                      +.|.|.++.|...          .+++.|++++|++.+..+..+..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus         5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            3456666666431          245666666666664444445556666666666666664444445556666666666


Q ss_pred             cCcccccCCccccCCCCCC
Q 031545          138 NNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus       138 ~N~l~g~~P~~l~~l~~L~  156 (158)
                      +|.+++..+..+.++++|+
T Consensus        85 ~N~l~~~~~~~~~~l~~L~  103 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLK  103 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCC
T ss_pred             CCCccccCHHHhhCCcccC
Confidence            6666544333445555444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.33  E-value=2e-12  Score=91.85  Aligned_cols=77  Identities=30%  Similarity=0.399  Sum_probs=56.6

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+++..|..|..+++|+.|++++|++++..|..|..+++|++|++++|.+++..|..+..+++|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence            45677777777777666777777777777777777777666666777777777777777777777777777776654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.32  E-value=4.5e-12  Score=90.75  Aligned_cols=90  Identities=24%  Similarity=0.249  Sum_probs=56.3

Q ss_pred             CCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecc
Q 031545           68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY  137 (158)
Q Consensus        68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls  137 (158)
                      +.|.|.++.|...          .+++.|++++|++.+..+..+..+++|+.|++++|++.+..+..|..+++|++|+++
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            4567888887542          256777777777775555556667777777777777764444445666666666666


Q ss_pred             cCcccccCCccccCCCCCCC
Q 031545          138 NNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus       138 ~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +|.+++..+..+.++++|++
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCE
T ss_pred             CCcCCccCHhHhcCccCCCE
Confidence            66666443334555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.32  E-value=4.7e-12  Score=90.15  Aligned_cols=74  Identities=28%  Similarity=0.375  Sum_probs=36.7

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      .++.|++++|.+. .+|..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..|..+.++++|+
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR  105 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence            3455555555554 4444555555555555555555544444455555555555555555544334444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=5.8e-12  Score=88.35  Aligned_cols=78  Identities=24%  Similarity=0.268  Sum_probs=67.4

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+++.|++++|.+.+..|..|..+++|+.|++++|++++..+..|..+++|++|+|++|.+++..+..+.++++|++|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence            468899999999998888899999999999999999997555567899999999999999995544458888888753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.30  E-value=3.5e-12  Score=90.63  Aligned_cols=91  Identities=25%  Similarity=0.314  Sum_probs=76.2

Q ss_pred             CCCcccceeeCCC----------CCEEEEEcCCCCCCccchh-hhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEec
Q 031545           68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVP-ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL  136 (158)
Q Consensus        68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~L  136 (158)
                      ..|.|..+.|...          .+++.|++++|.+.+..+. .+..+++|+.|++++|++++..|..|..+++|++|++
T Consensus         6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A            6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            4567777777542          3788999999999866554 4888999999999999999888999999999999999


Q ss_pred             ccCcccccCCccccCCCCCCCC
Q 031545          137 YNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus       137 s~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ++|.+++..|..+.++++|++|
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCcCCccCHHHhcCCCCCCEE
Confidence            9999998887778888888754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=6.8e-12  Score=96.30  Aligned_cols=88  Identities=22%  Similarity=0.235  Sum_probs=73.5

Q ss_pred             CCcccceeeCCC------------CCEEEEEcCC-CCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEe
Q 031545           69 PCTWFHITCNQD------------NRVTRLDLGN-SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD  135 (158)
Q Consensus        69 ~c~~~gv~c~~~------------~~l~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~  135 (158)
                      .|.|..|.|...            .+++.|+|++ |.+.+..+..|..+++|+.|+|++|++++..|..|.++++|++|+
T Consensus         7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A            7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence            588888888654            2589999996 999988888999999999999999999998888999999999999


Q ss_pred             cccCcccccCCccccCCCCCCC
Q 031545          136 LYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus       136 Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      |++|.+++..|..+..++ |+.
T Consensus        87 l~~N~l~~~~~~~~~~~~-L~~  107 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLS-LQE  107 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCC-CCE
T ss_pred             CCCCccceeCHHHcccCC-ceE
Confidence            999999955444555443 543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.28  E-value=5e-12  Score=103.15  Aligned_cols=78  Identities=26%  Similarity=0.155  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ..++.|+|++|.|++..+..|.++++|++|++++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence            368999999999997777789999999999999999997667788999999999999999986555678888888764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.28  E-value=6e-12  Score=91.27  Aligned_cols=61  Identities=26%  Similarity=0.375  Sum_probs=31.0

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      +++.|++++|.+.+..+..|..+++|+.|++++|++.+..|..|..+++|++|+|++|.++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence            4555555555555444444555555555555555555444444555555555555555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.22  E-value=2.9e-11  Score=87.61  Aligned_cols=77  Identities=27%  Similarity=0.263  Sum_probs=55.1

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+..+..|..+++|+.|++++|++.+..|..|..+++|++|++++|.+++..|..+..+++|+.
T Consensus        81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  157 (220)
T 2v70_A           81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST  157 (220)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence            45667777777777666666777777777777777777666777777777777777777777666777777776654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.21  E-value=1.4e-11  Score=99.61  Aligned_cols=76  Identities=26%  Similarity=0.226  Sum_probs=48.0

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+..|..|..+++|++|++++|++.+..|..|..+++|++|++++|.+++..|..++++++|++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence            5666666666666555666666666666666666666555556666666666666666666544444666665554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.19  E-value=2.2e-11  Score=89.67  Aligned_cols=76  Identities=21%  Similarity=0.171  Sum_probs=42.8

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+..+.++++|++
T Consensus        60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  135 (251)
T 3m19_A           60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE  135 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence            4555666666655555555555666666666666665444445556666666666666666433334455555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.19  E-value=3.4e-11  Score=89.53  Aligned_cols=76  Identities=24%  Similarity=0.233  Sum_probs=47.5

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+.++++|++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  113 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE  113 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence            4667777777777555556777777777777777776433344566666666666666666443344555555543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.19  E-value=4e-11  Score=86.89  Aligned_cols=78  Identities=18%  Similarity=0.198  Sum_probs=59.1

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+++.|++++|.+++..+..|..+++|+.|++++|++++..|..|..+++|++|++++|.+++..|..+.++++|++|
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  134 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL  134 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred             CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence            457777777777776666677778888888888888876666667788888888888888887777777777777653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.18  E-value=5.4e-11  Score=84.64  Aligned_cols=79  Identities=28%  Similarity=0.291  Sum_probs=69.6

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ..+++.|++++|.+++..+..|..+++|+.|++++|++++..|..|..+++|++|++++|.+++..+..+.++++|++|
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  131 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL  131 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEE
Confidence            3579999999999998888889999999999999999998888889999999999999999995555568888887653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.16  E-value=4.6e-11  Score=91.47  Aligned_cols=77  Identities=23%  Similarity=0.286  Sum_probs=57.4

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|+.++++++|+.
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI  305 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred             CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence            35677777777777777777777777777777777777777777777777777777777777777777777777654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.15  E-value=7.5e-11  Score=85.45  Aligned_cols=75  Identities=28%  Similarity=0.276  Sum_probs=34.9

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.|++++|.+.+..|..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..|..+.++++|+
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  131 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN  131 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence            445555555555544444455555555555555555432222334444444444444444444344444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.15  E-value=4.9e-11  Score=91.73  Aligned_cols=76  Identities=32%  Similarity=0.307  Sum_probs=42.6

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+..+..+.++++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..++++++|++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence            4566666666666444445666666666666666666555555666666666666666665322222555555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.13  E-value=2.2e-11  Score=92.53  Aligned_cols=77  Identities=38%  Similarity=0.653  Sum_probs=55.6

Q ss_pred             CCEEEEEcCC-CCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGN-SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..++++++|++
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence            4567777774 7777777777777777777777777777777777777777777777777777777777777766654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.13  E-value=8.3e-11  Score=96.15  Aligned_cols=76  Identities=25%  Similarity=0.234  Sum_probs=46.9

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++++++|++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  108 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN  108 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence            5666666666666555556666666666666666666555555666666666666666666555556666655554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.12  E-value=9.1e-11  Score=92.73  Aligned_cols=78  Identities=23%  Similarity=0.249  Sum_probs=64.8

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCC-CccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTI-PVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+++.|++++|.+.+..|..|.++++|++|++++|.+.+.+ |..|..+++|++|++++|.+++..|..++++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            46889999999998877888888999999999999887665 4568888889999999888887778888888887754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.10  E-value=1.1e-10  Score=95.38  Aligned_cols=78  Identities=21%  Similarity=0.160  Sum_probs=64.8

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ..++.|++++|.+++..|..|.++++|++|++++|++.+..|..|.++++|++|++++|.+++..|..++++++|++|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL  110 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence            467888888888887778888888888888888888887778888888888888888888887778788888877653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.09  E-value=2.4e-10  Score=79.75  Aligned_cols=78  Identities=23%  Similarity=0.218  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      ..+++.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  128 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK  128 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence            357899999999998666666788999999999999999766667888999999999999998554445677887765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.08  E-value=2.6e-10  Score=83.02  Aligned_cols=74  Identities=27%  Similarity=0.369  Sum_probs=34.3

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.|++++|.+++..+..|..+++|+.|++++|++. .+|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  162 (229)
T 3e6j_A           89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT  162 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            3444444444444333333444444555555555444 4444444455555555555555533333344444443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.07  E-value=2.4e-10  Score=93.22  Aligned_cols=77  Identities=29%  Similarity=0.286  Sum_probs=68.7

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCC-CCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL-KSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l-~~L~~  157 (158)
                      .+++.|++++|++.+..|..|.++++|+.|++++|++++..|..|..+++|++|++++|.+++..|..+.++ ++|++
T Consensus       494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~  571 (635)
T 4g8a_A          494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF  571 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred             cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence            478899999999998888899999999999999999998888889999999999999999998888888877 56765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.06  E-value=1.5e-10  Score=84.47  Aligned_cols=78  Identities=19%  Similarity=0.222  Sum_probs=59.2

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCc-cCCCCCccccCCCCCCEEeccc-CcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN-IQGTIPVELGNLKSLISLDLYN-NNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~l~~L~~L~Ls~-N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+++.|++++|++++..+..|..+++|+.|++++|. +++..+..|..+++|++|++++ |.+++..|..+.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            467888888888886666678888888888888886 7755555778888888888887 88885555667777777653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.06  E-value=1.3e-10  Score=78.89  Aligned_cols=77  Identities=30%  Similarity=0.312  Sum_probs=66.1

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccccc-CCccccCCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGK-IPPSLAKLKSLVFL  158 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~-~P~~l~~l~~L~~L  158 (158)
                      ..+++.|++++|.+.+.  ..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++. .|..++++++|++|
T Consensus        41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L  118 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL  118 (149)
T ss_dssp             CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred             cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence            46789999999999865  7788999999999999999987888888899999999999999853 34778888888754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.05  E-value=2.3e-10  Score=88.56  Aligned_cols=74  Identities=24%  Similarity=0.195  Sum_probs=36.1

Q ss_pred             EEEEEcCCCCCCccchhhhc-CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           83 VTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        83 l~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      ++.|+|++|.+.+..+..+. .+++|+.|++++|++.+..|..|..+++|++|+|++|.+++..+..+.++++|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE  115 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence            45555555555544444443 455555555555555544344455555555555555555433333344444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.05  E-value=4.5e-10  Score=82.59  Aligned_cols=78  Identities=23%  Similarity=0.253  Sum_probs=58.7

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+++.|++++|.+.+..+..|..+++|+.|++++|++++..+..+..+++|++|++++|.+++..|..++++++|++|
T Consensus        83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A           83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence            467888888888886666667788888888888888886555567778888888888888885555567777777653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.05  E-value=5.2e-10  Score=79.88  Aligned_cols=77  Identities=26%  Similarity=0.325  Sum_probs=51.3

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+++..+..+.++++|++
T Consensus        76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  152 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  152 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence            45677777777777555555667777777777777777555555677777777777777777544444666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.04  E-value=4.2e-10  Score=89.34  Aligned_cols=78  Identities=24%  Similarity=0.275  Sum_probs=62.6

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+++.|++++|++.+..+..|..+++|+.|++++|.+.+..|..|.++++|++|+|++|.+++..+..+.++++|++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence            368888999999887778888888888888888888887777788888888888888888885555557777777653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.03  E-value=1.2e-10  Score=79.02  Aligned_cols=79  Identities=29%  Similarity=0.374  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCC-CCccccCCCCCCEEecccCcccccCC---ccccCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT-IPVELGNLKSLISLDLYNNNISGKIP---PSLAKLKSL  155 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~~P---~~l~~l~~L  155 (158)
                      ..+++.|++++|.+.+.+|..+..+++|+.|++++|.+++. .|..+..+++|++|++++|.+++..+   ..++.+++|
T Consensus        63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  142 (149)
T 2je0_A           63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL  142 (149)
T ss_dssp             CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence            35799999999999987888888899999999999999963 34789999999999999999996554   478888888


Q ss_pred             CCC
Q 031545          156 VFL  158 (158)
Q Consensus       156 ~~L  158 (158)
                      ++|
T Consensus       143 ~~L  145 (149)
T 2je0_A          143 TYL  145 (149)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.03  E-value=4.8e-10  Score=83.33  Aligned_cols=75  Identities=25%  Similarity=0.217  Sum_probs=35.2

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..++++++|+
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  127 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (276)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence            344445555544433333444445555555555555444444444555555555555555433333444444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.02  E-value=1.9e-10  Score=97.97  Aligned_cols=87  Identities=28%  Similarity=0.209  Sum_probs=43.9

Q ss_pred             CcccceeeCCCCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCC-CccccCCCCCCEEecccCcccccCCcc
Q 031545           70 CTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTI-PVELGNLKSLISLDLYNNNISGKIPPS  148 (158)
Q Consensus        70 c~~~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g~~P~~  148 (158)
                      |.+..|.+ -..+++.|++++|.+.+..|..|.++++|+.|++++|...+.+ |..|.++++|++|+|++|.+++..|..
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            34444444 3345666666666665555555555555555555555433333 344455555555555555555444444


Q ss_pred             ccCCCCCCC
Q 031545          149 LAKLKSLVF  157 (158)
Q Consensus       149 l~~l~~L~~  157 (158)
                      ++++++|++
T Consensus        93 ~~~l~~L~~  101 (844)
T 3j0a_A           93 FQGLFHLFE  101 (844)
T ss_dssp             SCSCSSCCC
T ss_pred             ccCCcccCE
Confidence            444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.01  E-value=1.8e-10  Score=79.71  Aligned_cols=75  Identities=33%  Similarity=0.375  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCC--ccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P--~~l~~l~~L~~L  158 (158)
                      .+++.|++++|.+.+.  ..+..+++|+.|++++|++.+.+|..+..+++|++|++++|.+++ +|  ..+..+++|++|
T Consensus        49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L  125 (168)
T 2ell_A           49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSL  125 (168)
T ss_dssp             GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEE
T ss_pred             CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEE
Confidence            5689999999999865  778899999999999999998788888889999999999999984 44  678888888753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.00  E-value=5.9e-10  Score=91.37  Aligned_cols=75  Identities=32%  Similarity=0.410  Sum_probs=57.7

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccC-CccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI-PPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~-P~~l~~l~~L~~L  158 (158)
                      .+++.|++++|.+. .+|..+..+++|+.|++++|++++ +| .++.+++|+.|++++|.+++.. |..++++++|+.|
T Consensus       463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            46778888888887 777778888888888888888885 66 6778888888888888887665 7777777777653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.00  E-value=9.6e-10  Score=81.78  Aligned_cols=75  Identities=27%  Similarity=0.311  Sum_probs=34.8

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..++++++|+
T Consensus       134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            344444444444433333344444455555555554443333344455555555555555544443444444444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.99  E-value=1.1e-09  Score=81.56  Aligned_cols=75  Identities=27%  Similarity=0.283  Sum_probs=35.6

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..++++++|+
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  184 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK  184 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence            344444444444433333344455555555555555543333344555555555555555543333344444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.98  E-value=5.9e-10  Score=86.22  Aligned_cols=77  Identities=22%  Similarity=0.243  Sum_probs=43.3

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+..+..|..+++|+.|++++|++.+..+..|..+++|++|+|++|.+++..|..+.++++|++
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  140 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK  140 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence            34556666666666544455556666666666666665444444555555666666665555444555555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.98  E-value=2.7e-10  Score=85.84  Aligned_cols=89  Identities=26%  Similarity=0.285  Sum_probs=59.0

Q ss_pred             CCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCC--CCCccccCCCCCCEEe
Q 031545           68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG--TIPVELGNLKSLISLD  135 (158)
Q Consensus        68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g--~~p~~~~~l~~L~~L~  135 (158)
                      +.|.|.+++|...          .+++.|++++|.+....+..|.++++|+.|++++|.+..  ..|..+..+++|++|+
T Consensus         5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            4578888888642          368888999988884434446788888888888888762  2244555566666666


Q ss_pred             cccCcccccCCccccCCCCCCC
Q 031545          136 LYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus       136 Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++|.+. .+|..+.++++|++
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~  105 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEH  105 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCE
T ss_pred             CCCCccc-cChhhcCCCCCCCE
Confidence            6666665 44555555555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.98  E-value=8.4e-10  Score=87.89  Aligned_cols=75  Identities=27%  Similarity=0.312  Sum_probs=38.0

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.|++++|.+.+..+..|.++++|+.|++++|.+.+..|..|.++++|++|++++|.+++..+..+.++++|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  107 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT  107 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence            445555555555544445555555555555555555544455555555555555555555422222344444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.96  E-value=1.5e-09  Score=75.51  Aligned_cols=73  Identities=29%  Similarity=0.308  Sum_probs=62.8

Q ss_pred             EEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        83 l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+.+++++|+++ .+|..+.  ++++.|++++|++++..|..|..+++|++|++++|.+++..|..+.++++|++|
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence            358999999998 5776663  789999999999998888899999999999999999996666667888888764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.96  E-value=4.2e-10  Score=94.66  Aligned_cols=75  Identities=31%  Similarity=0.526  Sum_probs=57.2

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+++.|+|++|.+. .+|..|.++++|+.|++++|.++ .+|..|+.+++|++|+|++|.++ .+|..++++++|++|
T Consensus       247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL  321 (727)
T ss_dssp             CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred             CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence            45677777777777 67777777888888888888877 67777777888888888888776 777777777777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.96  E-value=8e-10  Score=76.33  Aligned_cols=79  Identities=27%  Similarity=0.350  Sum_probs=66.8

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCC-CCccccCCCCCCEEecccCcccccCC---ccccCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT-IPVELGNLKSLISLDLYNNNISGKIP---PSLAKLKSL  155 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~~P---~~l~~l~~L  155 (158)
                      ..+++.|++++|.+.+.+|..+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|
T Consensus        70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence            35789999999999987888888899999999999999953 22789999999999999999995544   378888888


Q ss_pred             CCC
Q 031545          156 VFL  158 (158)
Q Consensus       156 ~~L  158 (158)
                      ++|
T Consensus       150 ~~L  152 (168)
T 2ell_A          150 TYL  152 (168)
T ss_dssp             CEE
T ss_pred             cEe
Confidence            754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.95  E-value=8.9e-10  Score=87.03  Aligned_cols=75  Identities=23%  Similarity=0.240  Sum_probs=38.8

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence            445555555555544445555555555555555555544455555555555555555555533333344555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.95  E-value=1.3e-09  Score=76.26  Aligned_cols=72  Identities=24%  Similarity=0.215  Sum_probs=61.6

Q ss_pred             EEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           84 TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        84 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      +.+++++|++. .+|..+.  ++|+.|++++|++.+..|..|..+++|++|+|++|.+++..+..+.++++|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL   86 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence            57899999997 7777664  799999999999998888899999999999999999996544457888888754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.95  E-value=1.1e-09  Score=83.40  Aligned_cols=80  Identities=28%  Similarity=0.394  Sum_probs=65.0

Q ss_pred             CCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecc
Q 031545           68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY  137 (158)
Q Consensus        68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls  137 (158)
                      +.|.+..+.|...          .+++.|++++|.+.+..|..|.++++|+.|++++|++++..|..+..+++|++|+++
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            3567888888632          368899999999987777788999999999999999997778888888888888888


Q ss_pred             cCcccccCCcc
Q 031545          138 NNNISGKIPPS  148 (158)
Q Consensus       138 ~N~l~g~~P~~  148 (158)
                      +|.++ .+|..
T Consensus       111 ~n~l~-~l~~~  120 (332)
T 2ft3_A          111 KNHLV-EIPPN  120 (332)
T ss_dssp             SSCCC-SCCSS
T ss_pred             CCcCC-ccCcc
Confidence            88877 55543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.94  E-value=1.8e-09  Score=82.14  Aligned_cols=81  Identities=23%  Similarity=0.362  Sum_probs=67.9

Q ss_pred             CCCcccceeeCC----------CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecc
Q 031545           68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY  137 (158)
Q Consensus        68 ~~c~~~gv~c~~----------~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls  137 (158)
                      +.|.+..+.|..          ...++.|++++|.+.+..+..|.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            456788888863          2468899999999997777789999999999999999998779999999999999999


Q ss_pred             cCcccccCCccc
Q 031545          138 NNNISGKIPPSL  149 (158)
Q Consensus       138 ~N~l~g~~P~~l  149 (158)
                      +|.++ .+|..+
T Consensus       109 ~n~l~-~l~~~~  119 (330)
T 1xku_A          109 KNQLK-ELPEKM  119 (330)
T ss_dssp             SSCCS-BCCSSC
T ss_pred             CCcCC-ccChhh
Confidence            99887 566543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.94  E-value=1.6e-09  Score=85.73  Aligned_cols=76  Identities=22%  Similarity=0.288  Sum_probs=42.8

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .++.|++++|++.+..+..|.++++|+.|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  140 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE  140 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence            4556666666666555555666666666666666665544455555666666666666555333334555555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.94  E-value=1.3e-09  Score=88.63  Aligned_cols=74  Identities=23%  Similarity=0.296  Sum_probs=44.7

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+++..|..|..+++|++|++++|+++ .+|..  .+++|++|++++|.+++ .+|..++++++|++
T Consensus        76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~  150 (562)
T 3a79_B           76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF  150 (562)
T ss_dssp             TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred             CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence            34566666666666555555666666666666666665 45544  56666666666666664 34466777776664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.93  E-value=1.8e-09  Score=80.58  Aligned_cols=77  Identities=22%  Similarity=0.229  Sum_probs=52.4

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCc-cCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN-IQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+..|..+..+++|+.|++++|. +....|..+..+++|++|++++|.+++..|..+.++++|++
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  133 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY  133 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence            356677777777766656667777777777777776 55444666777777777777777777655666666666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.93  E-value=1.6e-09  Score=88.58  Aligned_cols=77  Identities=21%  Similarity=0.304  Sum_probs=49.1

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+..|..|.++++|++|++++|.+.+..|..++.+++|++|++++|.+.+ .+|..++++++|++
T Consensus        80 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  157 (606)
T 3vq2_A           80 HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH  157 (606)
T ss_dssp             TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred             hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence            356666666666665556666666666666666666665444556666666666666666654 45667777776664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.93  E-value=7.7e-10  Score=78.53  Aligned_cols=74  Identities=23%  Similarity=0.350  Sum_probs=36.7

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.|++++|.+.+..+..+..+++|+.|++++|++++..|..+..+++|++|++++|.+.+.+| .+.++++|+
T Consensus        89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~  162 (197)
T 4ezg_A           89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK  162 (197)
T ss_dssp             TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred             CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence            45555555555554444455555555555555555554444455555555555555554222333 344444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.93  E-value=1.6e-09  Score=88.87  Aligned_cols=76  Identities=20%  Similarity=0.109  Sum_probs=45.6

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+..|..|..+++|+.|++++|.+.+..|..|+.+++|++|++++|.+++..+..++++++|++
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  151 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT  151 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence            4556666666666555556666666666666666666555555566666666666666666332223455555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.92  E-value=2.2e-09  Score=80.82  Aligned_cols=76  Identities=29%  Similarity=0.229  Sum_probs=43.3

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+++..+..|..+++|+.|++++|++.+..+..|..+++|+.|++++|.+++..+..+.++++|++
T Consensus       101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  176 (290)
T 1p9a_G          101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT  176 (290)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred             CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCE
Confidence            4556666666666444455666666666666666666444444556666666666666666333333455555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.92  E-value=2.4e-09  Score=80.54  Aligned_cols=74  Identities=24%  Similarity=0.194  Sum_probs=37.5

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.|++++|.+.+..+..|..+++|+.|++++|++++..+..+..+++|++|++++|.++ .+|..+..+.+|+
T Consensus       125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~  198 (290)
T 1p9a_G          125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP  198 (290)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred             CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCC
Confidence            4555555555555444444455555555555555555333333445555555555555555 4555444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.92  E-value=1.4e-09  Score=84.62  Aligned_cols=61  Identities=23%  Similarity=0.171  Sum_probs=31.0

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      +++.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+++|++|++++|.++
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  130 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS  130 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC
Confidence            3445555555555444444555555555555555555444444455555555555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.91  E-value=1.5e-09  Score=89.84  Aligned_cols=76  Identities=25%  Similarity=0.254  Sum_probs=48.5

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+..|..+.++++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..++++++|++
T Consensus        50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  125 (680)
T 1ziw_A           50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT  125 (680)
T ss_dssp             TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCE
T ss_pred             cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCE
Confidence            4566666666666655666666666666666666666433335666777777777777776554556666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.91  E-value=2.6e-09  Score=79.66  Aligned_cols=77  Identities=22%  Similarity=0.223  Sum_probs=58.1

Q ss_pred             CCEEEEEcCCCC-CCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSN-LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|. +....|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..++++++|++
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  157 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH  157 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence            467888888886 66555777778888888888888888766777788888888888888887555555777777765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.91  E-value=2e-09  Score=82.40  Aligned_cols=72  Identities=21%  Similarity=0.159  Sum_probs=64.8

Q ss_pred             EEEcCCC-CCCccchhhhcCCCCCCEEeccC-CccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           85 RLDLGNS-NLSGRLVPELGKLEHLQYLELYK-NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        85 ~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~-n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .++.+++ ++. .+|. +..+++|+.|++++ |.+.+..|..|..+++|+.|+|++|.+++..|..|+++++|++|
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            5689998 888 5888 99999999999996 99998777889999999999999999999888899999998764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.91  E-value=3.1e-10  Score=93.98  Aligned_cols=73  Identities=22%  Similarity=0.337  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCCCCCCcc-----------------chhhhc--CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCc
Q 031545           80 DNRVTRLDLGNSNLSGR-----------------LVPELG--KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN  140 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~  140 (158)
                      ..+++.|++++|.+.|.                 +|+.+.  ++++|++|++++|.+.|.+|..++++++|++|++++|.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            45788999999999985                 888888  89999999999999999999999999999999999998


Q ss_pred             -ccc-cCCccccCC
Q 031545          141 -ISG-KIPPSLAKL  152 (158)
Q Consensus       141 -l~g-~~P~~l~~l  152 (158)
                       ++| .+|..++++
T Consensus       285 ~l~~~~lp~~~~~L  298 (636)
T 4eco_A          285 GISGEQLKDDWQAL  298 (636)
T ss_dssp             TSCHHHHHHHHHHH
T ss_pred             CCccccchHHHHhh
Confidence             888 788777665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.91  E-value=2.9e-09  Score=80.11  Aligned_cols=77  Identities=29%  Similarity=0.283  Sum_probs=58.6

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCC-CCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLK-SLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~-~L~~  157 (158)
                      .+++.|++++|.+.+..|..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+++..|..+..++ +|++
T Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~  252 (306)
T 2z66_A          175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF  252 (306)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred             cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence            4677888888888776677777888888888888888766666777788888888888888877777777663 5654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.90  E-value=4.9e-10  Score=84.96  Aligned_cols=63  Identities=22%  Similarity=0.221  Sum_probs=35.3

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCC-----CCCCEEeccCCccCCCCCccccCCCCCCEEecccCccccc
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKL-----EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGK  144 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~  144 (158)
                      .+++.|++++|.+.+. |..+..+     ++|++|++++|++.+..|..++.+++|++|++++|.+.|.
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence            3455556666655544 4444444     5566666666666555445566666666666666655543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.90  E-value=3.7e-09  Score=78.46  Aligned_cols=17  Identities=35%  Similarity=0.501  Sum_probs=6.5

Q ss_pred             cCCCCCCEEecccCccc
Q 031545          126 GNLKSLISLDLYNNNIS  142 (158)
Q Consensus       126 ~~l~~L~~L~Ls~N~l~  142 (158)
                      ..+++|++|++++|.++
T Consensus       178 ~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          178 DKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             TTCTTCCEEECCSSCCS
T ss_pred             ccCCCcCEEECCCCcCC
Confidence            33333333333333333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.90  E-value=2.9e-09  Score=81.00  Aligned_cols=76  Identities=29%  Similarity=0.312  Sum_probs=53.8

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~  267 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV  267 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCE
Confidence            45677777777777666667777777777777777777655556777777777777777777 66776666666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.90  E-value=3.3e-09  Score=78.77  Aligned_cols=78  Identities=24%  Similarity=0.348  Sum_probs=60.1

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~L  158 (158)
                      .+++.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|++|++++|.+++ .+|..++++++|++|
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A           76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence            468888888888887767778888888888888888886655567788888888888888875 357777777777653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.90  E-value=8.7e-10  Score=76.90  Aligned_cols=74  Identities=22%  Similarity=0.173  Sum_probs=40.7

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCc--cccCCCCCCEEecccCcccccCCcc----ccCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV--ELGNLKSLISLDLYNNNISGKIPPS----LAKLKSL  155 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~--~~~~l~~L~~L~Ls~N~l~g~~P~~----l~~l~~L  155 (158)
                      +++.|++++|.+.+..+..+..+++|+.|++++|++. .+|.  .+..+++|++|++++|.++ .+|..    +..+++|
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence            4556666666665332233355666666666666664 3444  4555666666666666665 44443    5555555


Q ss_pred             CC
Q 031545          156 VF  157 (158)
Q Consensus       156 ~~  157 (158)
                      ++
T Consensus       143 ~~  144 (176)
T 1a9n_A          143 RV  144 (176)
T ss_dssp             SE
T ss_pred             ce
Confidence            43

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.90  E-value=1.7e-09  Score=87.35  Aligned_cols=77  Identities=22%  Similarity=0.212  Sum_probs=56.1

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+..|..|..+++|++|++++|++.+..|..++.+++|++|++++|.+++ .+|..++++++|++
T Consensus        50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  127 (549)
T 2z81_A           50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT  127 (549)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence            467778888888776666777777788888888887776555567777778888887777765 34566677776664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.89  E-value=2e-09  Score=86.57  Aligned_cols=76  Identities=21%  Similarity=0.269  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVFL  158 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~L  158 (158)
                      ..+++.|++++|.+.+..|..|..+++|++|++++|+++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|
T Consensus        44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L  120 (520)
T 2z7x_B           44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL  120 (520)
T ss_dssp             CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred             cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence            356888888888888777788888888888888888888 56665  78888888888888886 577888888888764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.89  E-value=2.8e-09  Score=84.57  Aligned_cols=76  Identities=20%  Similarity=0.221  Sum_probs=51.9

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+..|..|..+++|+.|++++|++.+..|..|..+++|+.|++++|.+++..+..+..+++|+.
T Consensus       219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  294 (452)
T 3zyi_A          219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE  294 (452)
T ss_dssp             TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred             cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence            4556666666666666667777777777777777777666667777777777777777777554455666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.88  E-value=3e-09  Score=84.68  Aligned_cols=77  Identities=21%  Similarity=0.169  Sum_probs=52.5

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+..|..|.++++|+.|++++|.+.+..+..|.++++|++|++++|.+.+..|..+.++++|++
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  132 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS  132 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence            45777777777777666777777777777777777777444445667777777777777776666666666666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.88  E-value=2.9e-09  Score=84.22  Aligned_cols=76  Identities=28%  Similarity=0.295  Sum_probs=52.0

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+..|..|..+++|+.|++++|++.+..|..|..+++|+.|+|++|.+++..+..+..+++|+.
T Consensus       208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER  283 (440)
T ss_dssp             SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred             ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence            4556666666666666666777777777777777777666667777777777777777777555555666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.87  E-value=3.4e-09  Score=85.79  Aligned_cols=76  Identities=25%  Similarity=0.197  Sum_probs=42.3

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+..+..|.++++|++|++++|++.+..|..|..+++|++|++++|.+++..+..++++++|++
T Consensus        53 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  128 (570)
T 2z63_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  128 (570)
T ss_dssp             SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred             CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence            4555666666555444455555666666666666655444455556666666666666655332224555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.87  E-value=1.6e-09  Score=91.22  Aligned_cols=75  Identities=28%  Similarity=0.426  Sum_probs=69.5

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ..++.|+|++|.+. .+|..+..+++|+.|++++|.++ .+|..|..+++|++|+|++|.++ .+|..++++++|++|
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred             CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence            56889999999998 78888889999999999999999 89999999999999999999999 899999999998764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.87  E-value=4.1e-09  Score=86.50  Aligned_cols=78  Identities=19%  Similarity=0.175  Sum_probs=64.7

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+++.|++++|.+.+..|..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|
T Consensus        99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  176 (597)
T 3oja_B           99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  176 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence            468899999999998777778889999999999999985444456889999999999999988777788888888754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.86  E-value=3e-09  Score=85.45  Aligned_cols=74  Identities=23%  Similarity=0.194  Sum_probs=54.7

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+..|..|..+++|++|++++|++++..|..|..+++|++|++++|.++ .+|..  .+++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~   94 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKH   94 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccE
Confidence            46777888888877666677777778888888888877666777777788888888888777 56655  5666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.86  E-value=2.1e-09  Score=76.21  Aligned_cols=76  Identities=17%  Similarity=0.255  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+++.|++++|.+.  .++.+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..++++++|++|
T Consensus        66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  141 (197)
T 4ezg_A           66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI  141 (197)
T ss_dssp             TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred             CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence            46889999999765  34578899999999999999998888899999999999999999998788889999888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.85  E-value=2.2e-09  Score=81.86  Aligned_cols=75  Identities=28%  Similarity=0.341  Sum_probs=47.9

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~  268 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV  268 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE
Confidence            5566666666666555566666666666666666666555556666666666666666666 56666666665554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.85  E-value=6.1e-09  Score=80.92  Aligned_cols=78  Identities=21%  Similarity=0.252  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCcc-ccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ..+++.|++++|.+.+..|..+..+++|+.|++++|++.. +|.. +..+++|++|++++|.+++..|..++++++|++|
T Consensus        92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  170 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  170 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred             CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence            3568888888888887777778888888888888888884 5544 5788888888888888887666678887777653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.83  E-value=3.1e-09  Score=81.81  Aligned_cols=91  Identities=19%  Similarity=0.226  Sum_probs=71.0

Q ss_pred             CCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCc-cccCCCCCCE-Ee
Q 031545           68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV-ELGNLKSLIS-LD  135 (158)
Q Consensus        68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~-~~~~l~~L~~-L~  135 (158)
                      +.|.+..|.|...          .++++|+|++|+|+...+..|.++++|++|++++|++.+.+|. .|.++++++. +.
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            4577888999642          3689999999999955455789999999999999998776664 5778887765 55


Q ss_pred             cccCcccccCCccccCCCCCCCC
Q 031545          136 LYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus       136 Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ++.|.++...|..+.++++|++|
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEE
T ss_pred             ccCCcccccCchhhhhccccccc
Confidence            66788886667778888888753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.83  E-value=3.4e-09  Score=86.57  Aligned_cols=77  Identities=22%  Similarity=0.077  Sum_probs=49.7

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+..|..|.++++|+.|++++|++.+..|..|+.+++|++|++++|.+++..|..++++++|++
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~  133 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES  133 (606)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred             ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence            45666777777766666666666777777777777666666666666666666666666666443455555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.83  E-value=2.1e-09  Score=74.89  Aligned_cols=75  Identities=25%  Similarity=0.282  Sum_probs=63.7

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc--cccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP--SLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~--~l~~l~~L~~L  158 (158)
                      .+++.|++++|.+.+.  +.+..+++|+.|++++|++++..|..+..+++|++|++++|.++ .+|.  .+.++++|++|
T Consensus        42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred             CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence            3799999999999965  67899999999999999999644444589999999999999997 6776  78888888753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.83  E-value=4.6e-09  Score=80.69  Aligned_cols=78  Identities=21%  Similarity=0.193  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc--cccCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP--SLAKLKSLVF  157 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~--~l~~l~~L~~  157 (158)
                      ..+++.|++++|.+.+..|..|..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|.  .+.++++|++
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI  153 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred             CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence            356888888888888777777888888888888888888543344788888888888888888 4554  6777777765


Q ss_pred             C
Q 031545          158 L  158 (158)
Q Consensus       158 L  158 (158)
                      |
T Consensus       154 L  154 (353)
T 2z80_A          154 L  154 (353)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.82  E-value=3.7e-09  Score=86.66  Aligned_cols=72  Identities=28%  Similarity=0.394  Sum_probs=65.4

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .++++++|++|
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL  513 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEE
Confidence            47889999999995 666 999999999999999999 899999999999999999999995 78 78999988764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.79  E-value=1e-08  Score=84.96  Aligned_cols=78  Identities=27%  Similarity=0.244  Sum_probs=62.4

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+++.|++++|.+.+..+..|.++++|++|++++|++.+..|..|+.+++|++|++++|.+++..|..++++++|++|
T Consensus        73 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  150 (680)
T 1ziw_A           73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL  150 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred             cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence            467888888888885544568888888888888888886666778888888888888888887777777788777653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.79  E-value=7e-09  Score=84.33  Aligned_cols=76  Identities=25%  Similarity=0.268  Sum_probs=67.0

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ..+++.|++++|.+.+..|..|..+++|+.|++++|++++..|..|..+++|++|++++|.++ .+|..  .+++|++|
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L  126 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHL  126 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEE
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEE
Confidence            357899999999999888889999999999999999999888889999999999999999998 67776  67777653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=1.1e-09  Score=93.92  Aligned_cols=74  Identities=26%  Similarity=0.292  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCCCCCCc-----------------cchhhhc--CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCc
Q 031545           80 DNRVTRLDLGNSNLSG-----------------RLVPELG--KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN  140 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~  140 (158)
                      ..+++.|++++|.+.+                 .+|+.+.  ++++|+.|++++|.+.|.+|..+.++++|++|++++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            4578889999999887                 3888877  88999999999999888899888888899999998887


Q ss_pred             -ccc-cCCccccCCC
Q 031545          141 -ISG-KIPPSLAKLK  153 (158)
Q Consensus       141 -l~g-~~P~~l~~l~  153 (158)
                       ++| .+|..+++++
T Consensus       527 ~lsg~~iP~~i~~L~  541 (876)
T 4ecn_A          527 GISAAQLKADWTRLA  541 (876)
T ss_dssp             TSCHHHHHHHHHHHH
T ss_pred             CcccccchHHHHhhh
Confidence             887 7777666544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.78  E-value=1.2e-08  Score=82.59  Aligned_cols=79  Identities=24%  Similarity=0.327  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVFL  158 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~L  158 (158)
                      ..+++.|++++|.+.+..|..|..+++|+.|++++|++.+..+..++.+++|++|++++|.+++ .+|..++++++|++|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  154 (570)
T 2z63_A           75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (570)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             chhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence            3578999999999987777888899999999999999886544468889999999999998886 478888888888754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.77  E-value=7.1e-09  Score=83.37  Aligned_cols=73  Identities=25%  Similarity=0.268  Sum_probs=37.7

Q ss_pred             CEEEEEcCCCCCCccchhhhc-CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+..|..+. .+++|+.|++++|.+++. |. ...+++|++|++++|.+++ +|+.+..+++|++
T Consensus       145 ~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~  218 (487)
T 3oja_A          145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW  218 (487)
T ss_dssp             SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSE
T ss_pred             CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccE
Confidence            344555555555544444443 345555555555555532 21 2235666666666666664 3444666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.77  E-value=8.9e-09  Score=87.68  Aligned_cols=78  Identities=33%  Similarity=0.381  Sum_probs=56.4

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCcc--ccCCCCCCEEecccCcccccCC-ccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE--LGNLKSLISLDLYNNNISGKIP-PSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~--~~~l~~L~~L~Ls~N~l~g~~P-~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+..|..|.++++|+.|++++|.+.+.+|..  +.++++|++|++++|.+.+..| ..++++++|++
T Consensus        73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~  152 (844)
T 3j0a_A           73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS  152 (844)
T ss_dssp             TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred             CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence            45777777777777777777777777888888777777666554  7777777888887777775544 45777777765


Q ss_pred             C
Q 031545          158 L  158 (158)
Q Consensus       158 L  158 (158)
                      |
T Consensus       153 L  153 (844)
T 3j0a_A          153 I  153 (844)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.75  E-value=2.5e-09  Score=81.02  Aligned_cols=74  Identities=19%  Similarity=0.169  Sum_probs=36.5

Q ss_pred             CEEEEEcCCCCCCccchhhh--cCCCCCCEEeccCCccCCCCCccccCC-----CCCCEEecccCcccccCCccccCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPEL--GKLEHLQYLELYKNNIQGTIPVELGNL-----KSLISLDLYNNNISGKIPPSLAKLKS  154 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~--~~l~~L~~L~l~~n~l~g~~p~~~~~l-----~~L~~L~Ls~N~l~g~~P~~l~~l~~  154 (158)
                      +++.|++++|.+.+.+|..+  ..+++|+.|++++|++++. |..+..+     ++|++|++++|.+.+..|..++++++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            44555555555554444443  4455555555555555543 4444433     45555555555555444444555444


Q ss_pred             CC
Q 031545          155 LV  156 (158)
Q Consensus       155 L~  156 (158)
                      |+
T Consensus       175 L~  176 (312)
T 1wwl_A          175 LS  176 (312)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.73  E-value=7.4e-09  Score=78.27  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=33.6

Q ss_pred             EEEEEcCCCCCCccchhhh--cCCCCCCEEeccCCccCCCCC----ccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           83 VTRLDLGNSNLSGRLVPEL--GKLEHLQYLELYKNNIQGTIP----VELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        83 l~~L~l~~n~l~~~~p~~~--~~l~~L~~L~l~~n~l~g~~p----~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++|++++|.+.+..|..+  ..+++|+.|++++|.+.+..|    ..+..+++|++|++++|.+.+..|..++++++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            5555555555555555444  444445555555444444332    1222344444444444444433333444444433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.66  E-value=1.3e-08  Score=73.98  Aligned_cols=74  Identities=20%  Similarity=0.231  Sum_probs=49.2

Q ss_pred             CCEEEEEcCCCC-CCccchhhhcCCCCCCEEeccC-CccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           81 NRVTRLDLGNSN-LSGRLVPELGKLEHLQYLELYK-NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        81 ~~l~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~-n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      .+++.|++++|. ++...+..|..+++|+.|++++ |++++..+..|..+++|++|++++|.+++ +|. +..+++|+
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~  130 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD  130 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence            457777777775 6644455677777777777777 77775555566777777777777777763 555 55555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.61  E-value=2.9e-08  Score=74.19  Aligned_cols=77  Identities=23%  Similarity=0.278  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCCCCCCc--cchhhhcCCCCCCEEeccCCccCCCCCccccCCC--CCCEEecccCcccccCCc-------c
Q 031545           80 DNRVTRLDLGNSNLSG--RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLK--SLISLDLYNNNISGKIPP-------S  148 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~--~L~~L~Ls~N~l~g~~P~-------~  148 (158)
                      ..+++.|+|++|.+.+  .+|..+..+++|+.|+|++|++.+.  ..+..+.  +|++|+|++|.+.+.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            3579999999999997  5567778899999999999999964  3344444  899999999999987773       3


Q ss_pred             ccCCCCCCCC
Q 031545          149 LAKLKSLVFL  158 (158)
Q Consensus       149 l~~l~~L~~L  158 (158)
                      +..+++|+.|
T Consensus       247 l~~~P~L~~L  256 (267)
T 3rw6_A          247 RERFPKLLRL  256 (267)
T ss_dssp             HHHCTTCCEE
T ss_pred             HHHCcccCeE
Confidence            5667777653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.59  E-value=4.8e-08  Score=73.80  Aligned_cols=71  Identities=24%  Similarity=0.333  Sum_probs=39.1

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCC---CCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKL---EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l---~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      .+++.|++++|.+.+..|+.+..+   ++|+.|++++|+++ .+|..+.  ++|++|++++|.+++ +|. +..+++|+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~  297 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVD  297 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCS
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCcc
Confidence            345566666666665555555544   46666666666666 4555443  566666666666663 222 34444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.58  E-value=4.8e-08  Score=74.51  Aligned_cols=73  Identities=27%  Similarity=0.361  Sum_probs=44.5

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+.  +.+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|  +..+++|+.
T Consensus       265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  337 (347)
T 4fmz_A          265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS  337 (347)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred             CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence            3456666666666543  345566666666666666666666666666777777777777664433  555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.57  E-value=6.9e-08  Score=77.59  Aligned_cols=72  Identities=24%  Similarity=0.267  Sum_probs=40.1

Q ss_pred             ccceeeCCCCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCcccc-CCCCCCEEecccCcccc
Q 031545           72 WFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELG-NLKSLISLDLYNNNISG  143 (158)
Q Consensus        72 ~~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g  143 (158)
                      ..++.+....+++.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.+++
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            3334444344556666666666655555555556666666666666655555543 45566666666666553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.57  E-value=1.2e-07  Score=71.23  Aligned_cols=57  Identities=32%  Similarity=0.370  Sum_probs=27.1

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      +++.|++++|.+.+.  +.+..+++|+.|++++|++++.  +.+..+++|++|++++|.++
T Consensus       113 ~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence            455555555555532  2344445555555555554432  23444444444444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.55  E-value=5.2e-08  Score=73.87  Aligned_cols=51  Identities=22%  Similarity=0.253  Sum_probs=24.3

Q ss_pred             CCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545          104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus       104 l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++|+.|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus       190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~  240 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE  240 (317)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred             cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence            3444444444444442 3333445555555555555555 3444454444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.52  E-value=1.1e-07  Score=72.03  Aligned_cols=73  Identities=25%  Similarity=0.277  Sum_probs=44.6

Q ss_pred             CEEEEEcCCCCCCccchhhhc-CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+..+..+. .+++|+.|++++|.+++. |. ...+++|++|++++|.++ .+|..+..+++|++
T Consensus       145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~  218 (317)
T 3o53_A          145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTW  218 (317)
T ss_dssp             SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSE
T ss_pred             CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccE
Confidence            466666666666655555443 466666666666666633 22 234677777777777777 34555666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.52  E-value=2e-07  Score=69.06  Aligned_cols=70  Identities=33%  Similarity=0.450  Sum_probs=37.5

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+++ + +.+..+++|+.|++++|++++ +| .+..+++|++|++++|.+++.  ..+..+++|++
T Consensus       107 ~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~  176 (263)
T 1xeu_A          107 CLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW  176 (263)
T ss_dssp             SCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred             cccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence            34445555555443 2 235556666666666666653 23 455566666666666666543  34555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.51  E-value=1.9e-07  Score=70.11  Aligned_cols=71  Identities=32%  Similarity=0.346  Sum_probs=40.4

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+ + +.+..+++|+.|++++|++.+ + +.+..+++|++|++++|.+++.  ..+..+++|++
T Consensus        90 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  160 (291)
T 1h6t_A           90 KNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT  160 (291)
T ss_dssp             TTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             CCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCE
Confidence            456666666666653 2 236666666666666666664 2 3455666666666666666532  34555555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.50  E-value=2.9e-07  Score=69.60  Aligned_cols=69  Identities=30%  Similarity=0.457  Sum_probs=30.8

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.|++++|.+.+.  +.+..+++|+.|++++|++.+ +|. +..+++|++|++++|.+++ +|. ++.+++|+
T Consensus        86 ~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~  154 (308)
T 1h6u_A           86 KITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQ  154 (308)
T ss_dssp             SCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCC
T ss_pred             CCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCcc
Confidence            344444444444421  134444445555555554443 222 4445555555555555542 222 44444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.49  E-value=1.1e-08  Score=77.69  Aligned_cols=77  Identities=26%  Similarity=0.226  Sum_probs=53.8

Q ss_pred             CCEEEEEcCCCCCCcc-chhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccC-ccccc-CCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGR-LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN-NISGK-IPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N-~l~g~-~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+. ++..+..+++|+.|++++|.+++..|..+..+++|++|++++| .+++. +|..+.++++|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            4567777777777654 6666777777777777777777667777777777777777777 56642 5555666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.48  E-value=1.6e-08  Score=76.78  Aligned_cols=77  Identities=21%  Similarity=0.247  Sum_probs=42.5

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCC-ccCCC-CCccccCCCCCCEEecccC-ccccc-CCccccCCC-CC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN-NIQGT-IPVELGNLKSLISLDLYNN-NISGK-IPPSLAKLK-SL  155 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~g~-~p~~~~~l~~L~~L~Ls~N-~l~g~-~P~~l~~l~-~L  155 (158)
                      .+++.|++++|.+.+..+..+..+++|+.|++++| .+++. ++..+..+++|++|++++| .+++. +|..+..++ +|
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            34566666666665555555666666666666666 44432 4444555666666666666 55532 344455555 44


Q ss_pred             CC
Q 031545          156 VF  157 (158)
Q Consensus       156 ~~  157 (158)
                      ++
T Consensus       198 ~~  199 (336)
T 2ast_B          198 TQ  199 (336)
T ss_dssp             CE
T ss_pred             CE
Confidence            43

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.47  E-value=3.2e-07  Score=72.94  Aligned_cols=71  Identities=34%  Similarity=0.527  Sum_probs=47.6

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+. ++ +..+++|+.|++++|++.+.. . +..+++|++|++++|.+++ +|. +.++++|++
T Consensus        68 ~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~  138 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADIT-P-LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNR  138 (466)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSE
T ss_pred             cCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccCh-h-hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCE
Confidence            4677778888777744 33 777777777777777777433 3 6777777777777777763 343 566666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.45  E-value=3.5e-07  Score=69.15  Aligned_cols=71  Identities=32%  Similarity=0.472  Sum_probs=43.3

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+ ++. +..+++|+.|++++|.+++. +. +..+++|++|++++|.+++ +|. +.++++|+.
T Consensus       107 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~  177 (308)
T 1h6u_A          107 QSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTT  177 (308)
T ss_dssp             TTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred             CCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCE
Confidence            457777777777764 332 66677777777777776643 32 5666666666666666663 333 555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.45  E-value=6.6e-08  Score=79.36  Aligned_cols=68  Identities=29%  Similarity=0.410  Sum_probs=35.3

Q ss_pred             cccce-eeCCCCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc
Q 031545           71 TWFHI-TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP  147 (158)
Q Consensus        71 ~~~gv-~c~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~  147 (158)
                      .|.++ .|.. ++++.|++++|++++ +|..+.  ++|+.|++++|.++ .+|   ..+++|++|++++|.+++ +|.
T Consensus        49 ~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~  117 (571)
T 3cvr_A           49 AVSLLKECLI-NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE  117 (571)
T ss_dssp             HHHHHHHHHH-TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC
T ss_pred             hhhhcccccc-CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch
Confidence            56666 4542 345666666666654 444332  45555555555555 344   234555555555555553 444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.44  E-value=2.7e-07  Score=70.34  Aligned_cols=72  Identities=29%  Similarity=0.373  Sum_probs=43.7

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+.+.  +.+..+++|+.|++++|.+.+ + +.+..+++|+.|++++|.+.+..|..++++++|++
T Consensus       244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            455555655555532  345566666666666666664 2 33566667777777777776666666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.43  E-value=3.9e-07  Score=75.27  Aligned_cols=57  Identities=32%  Similarity=0.370  Sum_probs=25.6

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      +++.|+|++|.+.+.  +.+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.++
T Consensus       110 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A          110 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            455555555555431  2344444444444444444432  23444444444444444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.43  E-value=3.7e-09  Score=75.00  Aligned_cols=73  Identities=25%  Similarity=0.282  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      ..+++.|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++ +| .++.+++|++
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~  119 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRV  119 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCE
Confidence            3578899999999986 66 7888999999999999998 688877778899999999999985 55 4666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.41  E-value=4.2e-07  Score=67.28  Aligned_cols=72  Identities=28%  Similarity=0.345  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ..+++.|++++|.+.+.. + +..+++|+.|++++|++.+ +|.. .. ++|++|++++|.+++ +| .+.++++|++|
T Consensus        62 l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L  133 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEIL  133 (263)
T ss_dssp             CTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEE
Confidence            357899999999998544 4 8899999999999999985 5543 33 889999999999985 44 58888888753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.41  E-value=4.3e-07  Score=74.97  Aligned_cols=69  Identities=36%  Similarity=0.508  Sum_probs=32.6

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.|+|++|.+.+.  +.+..+++|+.|++++|.+.+..|  +..+++|+.|+|++|.+++ +| .+..+++|+
T Consensus       132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~  200 (605)
T 1m9s_A          132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLD  200 (605)
T ss_dssp             TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred             ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCC
Confidence            344555555555432  344455555555555555553333  4455555555555555542 22 244444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.41  E-value=4.3e-07  Score=72.19  Aligned_cols=69  Identities=32%  Similarity=0.373  Sum_probs=38.0

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.|++++|.+.+..|  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+++..|  +..+++|+
T Consensus       310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  378 (466)
T 1o6v_A          310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT  378 (466)
T ss_dssp             TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred             CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence            45555555555554333  44555555555555555542  345566666666666666665444  55555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.35  E-value=7.8e-07  Score=70.94  Aligned_cols=68  Identities=19%  Similarity=0.290  Sum_probs=51.7

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+++. |  +..+++|++|++++|.+++ +|  ++.+++|++|++++|.+++ +|  ++++++|++
T Consensus        64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~  131 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY  131 (457)
T ss_dssp             TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred             CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence            5678888888888754 3  7778888888888888886 33  7788888888888888885 44  677777665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.32  E-value=2.2e-06  Score=68.33  Aligned_cols=60  Identities=20%  Similarity=0.271  Sum_probs=37.4

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP  146 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P  146 (158)
                      .+++.|++++|.+.+.   .+..+++|+.|++++|++++ +|  +..+++|++|++++|.+++..+
T Consensus       191 ~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          191 KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred             CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence            3455666666666543   25566667777777777665 44  6666777777777777765433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.32  E-value=7.9e-07  Score=72.96  Aligned_cols=67  Identities=24%  Similarity=0.330  Sum_probs=33.5

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCC-------CEEecccCcccccCCccccCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSL-------ISLDLYNNNISGKIPPSLAKLKS  154 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L-------~~L~Ls~N~l~g~~P~~l~~l~~  154 (158)
                      +++.|++++|.+++ +|. +.  ++|+.|++++|+++ .+|. +..  +|       +.|++++|.++ .+|..+.++++
T Consensus       161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~  231 (571)
T 3cvr_A          161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP  231 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred             CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence            34445555555443 333 33  45555555555555 4444 332  44       66666666666 45665555555


Q ss_pred             CCC
Q 031545          155 LVF  157 (158)
Q Consensus       155 L~~  157 (158)
                      |++
T Consensus       232 L~~  234 (571)
T 3cvr_A          232 TCT  234 (571)
T ss_dssp             TEE
T ss_pred             CCE
Confidence            543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.32  E-value=4.1e-09  Score=74.78  Aligned_cols=74  Identities=24%  Similarity=0.255  Sum_probs=56.3

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCC--ccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P--~~l~~l~~L~~L  158 (158)
                      .+++.|++++|.+. .+|..+..+++|+.|++++|++++ +| .+..+++|++|++++|.+++ +|  ..+..+++|++|
T Consensus        70 ~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L  145 (198)
T 1ds9_A           70 ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDL  145 (198)
T ss_dssp             TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEE
T ss_pred             CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEE
Confidence            46788888888888 667777777888888888888885 55 57778888888888888873 33  357777777653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.31  E-value=7.2e-08  Score=74.82  Aligned_cols=77  Identities=21%  Similarity=0.259  Sum_probs=47.5

Q ss_pred             CCEEEEEcCCCCCC----ccchhhhcCCCCCCEEeccCCccCCC----CCccc--cCCCCCCEEecccCcccc----cCC
Q 031545           81 NRVTRLDLGNSNLS----GRLVPELGKLEHLQYLELYKNNIQGT----IPVEL--GNLKSLISLDLYNNNISG----KIP  146 (158)
Q Consensus        81 ~~l~~L~l~~n~l~----~~~p~~~~~l~~L~~L~l~~n~l~g~----~p~~~--~~l~~L~~L~Ls~N~l~g----~~P  146 (158)
                      .+++.|++++|.+.    +.+|..+..+++|+.|++++|.+++.    +|..+  +.+++|++|++++|.+++    .+|
T Consensus       216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~  295 (386)
T 2ca6_A          216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  295 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence            45667777777764    45566666667777777777776644    34444  236677777777777765    366


Q ss_pred             ccc-cCCCCCCC
Q 031545          147 PSL-AKLKSLVF  157 (158)
Q Consensus       147 ~~l-~~l~~L~~  157 (158)
                      ..+ .++++|++
T Consensus       296 ~~l~~~l~~L~~  307 (386)
T 2ca6_A          296 TVIDEKMPDLLF  307 (386)
T ss_dssp             HHHHHHCTTCCE
T ss_pred             HHHHhcCCCceE
Confidence            555 44555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.30  E-value=1.1e-06  Score=70.07  Aligned_cols=69  Identities=25%  Similarity=0.315  Sum_probs=44.2

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+.+ +| ++..+++|++|++++|++++ +|..+   ++|++|++++|.+++ +| .++++++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~  199 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTA  199 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCE
Confidence            356777777777774 55 47777777777777777774 55432   466666666666664 55 3566666553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.29  E-value=1.4e-07  Score=72.74  Aligned_cols=68  Identities=26%  Similarity=0.275  Sum_probs=51.0

Q ss_pred             CEEEEEcCCCCCCccchhhhcCC-----CCCCEEeccCCccCCCCCccc----cCC-CCCCEEecccCcccccCCccc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKL-----EHLQYLELYKNNIQGTIPVEL----GNL-KSLISLDLYNNNISGKIPPSL  149 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~g~~p~~~----~~l-~~L~~L~Ls~N~l~g~~P~~l  149 (158)
                      ++++|++++|.+.+..+..+..+     ++|+.|++++|++++..+..+    ..+ ++|++|++++|.+++..+..+
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  129 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF  129 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence            68888888888887777666664     888888888888886665543    334 788888888888886555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.26  E-value=2.3e-07  Score=71.98  Aligned_cols=62  Identities=18%  Similarity=0.170  Sum_probs=33.5

Q ss_pred             CCEEEEEcCCC---CCCccchhhh-------cCCCCCCEEeccCCccCC----CCCccccCCCCCCEEecccCccc
Q 031545           81 NRVTRLDLGNS---NLSGRLVPEL-------GKLEHLQYLELYKNNIQG----TIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        81 ~~l~~L~l~~n---~l~~~~p~~~-------~~l~~L~~L~l~~n~l~g----~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      .+++.|++++|   .+.+.+|..+       ..+++|+.|++++|.+++    .+|..+..+++|++|++++|.++
T Consensus        60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            34556666553   2333344333       455666666666666654    24455555666666666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.24  E-value=2e-06  Score=71.21  Aligned_cols=67  Identities=25%  Similarity=0.387  Sum_probs=41.4

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.|++++|.+++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|.++ .+|..+.++++|+.
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~  288 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETT  288 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCE
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCE
Confidence            45566666666653 33   33456666666666666 4554   4566777777777777 66766766666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.22  E-value=5.9e-07  Score=74.42  Aligned_cols=68  Identities=22%  Similarity=0.325  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL  152 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l  152 (158)
                      ..+++.|++++|.++ .+|.   .+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..|..+.++
T Consensus       240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            367999999999999 5665   6789999999999999 789999999999999999999998887766543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.21  E-value=6.5e-07  Score=71.33  Aligned_cols=63  Identities=24%  Similarity=0.297  Sum_probs=32.7

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc--cCCccccCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG--KIPPSLAKL  152 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g--~~P~~l~~l  152 (158)
                      +++.|++++|.+.+ +|..   +++|+.|++++|+++ .+|.   .+++|++|++++|.+++  .+|..++++
T Consensus       318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence            45566666666553 3332   345555555555555 3444   24555555555555555  455544443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.14  E-value=1.4e-06  Score=66.93  Aligned_cols=72  Identities=22%  Similarity=0.298  Sum_probs=54.4

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccC-CccCCCCCc-cccCCCCCCEEecccCcccccCCc-cccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYK-NNIQGTIPV-ELGNLKSLISLDLYNNNISGKIPP-SLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~P~-~l~~l~~L~  156 (158)
                      .++.|++++|+++ .+|+......+|+.+++.+ |.+. .+|. .|..+++|++|++++|.++ .+|. .+.++++|+
T Consensus       155 ~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          155 ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR  229 (350)
T ss_dssp             SCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEE
T ss_pred             hhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhh
Confidence            5778999999998 5666666677889999975 5555 5664 5788999999999999998 5554 466665554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.11  E-value=1.2e-06  Score=67.56  Aligned_cols=77  Identities=26%  Similarity=0.245  Sum_probs=62.9

Q ss_pred             CCEEEEEcCCCCCCccch----hhhcCCC-CCCEEeccCCccCCCCCccccCC-----CCCCEEecccCcccccCCcccc
Q 031545           81 NRVTRLDLGNSNLSGRLV----PELGKLE-HLQYLELYKNNIQGTIPVELGNL-----KSLISLDLYNNNISGKIPPSLA  150 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p----~~~~~l~-~L~~L~l~~n~l~g~~p~~~~~l-----~~L~~L~Ls~N~l~g~~P~~l~  150 (158)
                      .+++.|++++|.+.+..+    ..+..++ +|+.|++++|.+++..+..+..+     ++|++|++++|.+++..+..+.
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            459999999999997776    7788888 89999999999998777777665     9999999999999977666443


Q ss_pred             C----C-CCCCC
Q 031545          151 K----L-KSLVF  157 (158)
Q Consensus       151 ~----l-~~L~~  157 (158)
                      .    + ++|++
T Consensus       102 ~~l~~~~~~L~~  113 (362)
T 3goz_A          102 KTLAAIPFTITV  113 (362)
T ss_dssp             HHHHTSCTTCCE
T ss_pred             HHHHhCCCCccE
Confidence            3    3 56654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.97  E-value=6.2e-07  Score=70.69  Aligned_cols=37  Identities=30%  Similarity=0.303  Sum_probs=15.7

Q ss_pred             CCCEEeccCCccCC----CCCccccCCCCCCEEecccCccc
Q 031545          106 HLQYLELYKNNIQG----TIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus       106 ~L~~L~l~~n~l~g----~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      +|+.|++++|.+++    .+|..+..+++|++|++++|.++
T Consensus       371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            44444444444442    33333444444444444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.82  E-value=2.1e-06  Score=67.68  Aligned_cols=78  Identities=19%  Similarity=0.158  Sum_probs=63.4

Q ss_pred             CCEEEEEcCCCCCCcc----chhhhcCCCCCCEEeccCCccCCCCCccccC-----CCCCCEEecccCcccc----cCCc
Q 031545           81 NRVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQGTIPVELGN-----LKSLISLDLYNNNISG----KIPP  147 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~-----l~~L~~L~Ls~N~l~g----~~P~  147 (158)
                      .+++.|++++|.+.+.    ++..+..+++|+.|++++|.+++..+..+..     .++|++|++++|.+++    .+|.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            4899999999999865    5667778899999999999998654544432     6799999999999986    6788


Q ss_pred             cccCCCCCCCC
Q 031545          148 SLAKLKSLVFL  158 (158)
Q Consensus       148 ~l~~l~~L~~L  158 (158)
                      .+..+++|++|
T Consensus       393 ~l~~~~~L~~L  403 (461)
T 1z7x_W          393 TLLANHSLREL  403 (461)
T ss_dssp             HHHHCCCCCEE
T ss_pred             HHHhCCCccEE
Confidence            88778877653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.80  E-value=3.6e-06  Score=62.81  Aligned_cols=53  Identities=23%  Similarity=0.300  Sum_probs=42.3

Q ss_pred             cCCCCCCEEeccCCccCC--CCCccccCCCCCCEEecccCcccccCCccccCCC--CCC
Q 031545          102 GKLEHLQYLELYKNNIQG--TIPVELGNLKSLISLDLYNNNISGKIPPSLAKLK--SLV  156 (158)
Q Consensus       102 ~~l~~L~~L~l~~n~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~--~L~  156 (158)
                      .++++|+.|++++|++++  .+|..+..+++|+.|+|++|.+++.  ..+..+.  +|+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~  223 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLE  223 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcc
Confidence            458899999999999997  5567778899999999999999964  3344444  444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.54  E-value=8.4e-05  Score=56.31  Aligned_cols=74  Identities=11%  Similarity=-0.026  Sum_probs=40.5

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCC-EEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQ-YLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~-~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      ++++|++++| +...-+..|.++.+|+ .+++++ .+...-+..|.++++|+.+++++|.+...-+..|.++++|+.
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence            3445555544 4433334455555555 555555 444333455666666777777666666333446666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.54  E-value=8.9e-05  Score=56.19  Aligned_cols=75  Identities=15%  Similarity=0.138  Sum_probs=61.6

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCC-EEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI-SLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~-~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.+++++|+++...+..|..+.+|+.+++++| +...-+..|.++++|+ .+++.+ .++..-+..|.++++|+.
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            56999999999999666677999999999999998 7655566899999999 999988 566344567888887764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.53  E-value=8.8e-06  Score=66.03  Aligned_cols=74  Identities=18%  Similarity=0.204  Sum_probs=41.1

Q ss_pred             CEEEEEcCCCCCCcc----chhhhcCCCCCCEEeccCCccCC----CCCccccCCCCCCEEecccCcccccCCccccCCC
Q 031545           82 RVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQG----TIPVELGNLKSLISLDLYNNNISGKIPPSLAKLK  153 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~g----~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~  153 (158)
                      ++++|++++|.+.+.    ++..+..+++|+.|++++|.+++    .++..+..+++|+.|++++|.+.+ +|..+.+++
T Consensus       165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~  243 (592)
T 3ogk_B          165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA  243 (592)
T ss_dssp             TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT
T ss_pred             CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh
Confidence            456666666665443    33334455666666666666652    233334456677777777766653 444454444


Q ss_pred             CCC
Q 031545          154 SLV  156 (158)
Q Consensus       154 ~L~  156 (158)
                      +|+
T Consensus       244 ~L~  246 (592)
T 3ogk_B          244 NLE  246 (592)
T ss_dssp             TCC
T ss_pred             HHH
Confidence            444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.52  E-value=9.8e-06  Score=63.02  Aligned_cols=14  Identities=21%  Similarity=0.240  Sum_probs=5.8

Q ss_pred             CCCCCEEecccCcc
Q 031545          128 LKSLISLDLYNNNI  141 (158)
Q Consensus       128 l~~L~~L~Ls~N~l  141 (158)
                      .++|+.|+|++|.+
T Consensus       210 ~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          210 NRQLQELNVAYNGA  223 (372)
T ss_dssp             CSCCCEEECCSSCC
T ss_pred             CCCcCeEECCCCCC
Confidence            33444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.47  E-value=0.00025  Score=47.00  Aligned_cols=56  Identities=25%  Similarity=0.214  Sum_probs=39.5

Q ss_pred             EEEcCCCCCC-ccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545           85 RLDLGNSNLS-GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        85 ~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      .++.++++++ ..+|..+.  .+++.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666777765 34554332  36888888888888544556778888888888888764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.47  E-value=3e-05  Score=60.28  Aligned_cols=76  Identities=18%  Similarity=0.256  Sum_probs=48.6

Q ss_pred             CEEEEEcCCCCCCccchhhh-----cCCCCCCEEeccCCccCC----CCCccccCCCCCCEEecccCccccc----CCcc
Q 031545           82 RVTRLDLGNSNLSGRLVPEL-----GKLEHLQYLELYKNNIQG----TIPVELGNLKSLISLDLYNNNISGK----IPPS  148 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~g----~~p~~~~~l~~L~~L~Ls~N~l~g~----~P~~  148 (158)
                      +++.|++++|.+.+.....+     ...+.|+.|++++|.++.    .++..+...++|++|+|++|.++..    ++..
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            56777777777764433333     245678888888888763    2344456778888888888887642    2344


Q ss_pred             ccCCCCCCC
Q 031545          149 LAKLKSLVF  157 (158)
Q Consensus       149 l~~l~~L~~  157 (158)
                      +...++|+.
T Consensus       207 L~~~~~L~~  215 (372)
T 3un9_A          207 LDRNRQLQE  215 (372)
T ss_dssp             GGGCSCCCE
T ss_pred             HhcCCCcCe
Confidence            444555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.41  E-value=3.5e-05  Score=53.93  Aligned_cols=77  Identities=17%  Similarity=0.282  Sum_probs=53.4

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCc-cCCCCCccccCC----CCCCEEecccCc-ccccCCccccCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN-IQGTIPVELGNL----KSLISLDLYNNN-ISGKIPPSLAKLKS  154 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~l----~~L~~L~Ls~N~-l~g~~P~~l~~l~~  154 (158)
                      -++++||++++.++..--..+..+++|+.|+++++. ++..--..+..+    ++|++|+++++. ++..--..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            469999999999887666678889999999999985 653322334443    468999998864 55322234555666


Q ss_pred             CCC
Q 031545          155 LVF  157 (158)
Q Consensus       155 L~~  157 (158)
                      |++
T Consensus       141 L~~  143 (176)
T 3e4g_A          141 LKY  143 (176)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.20  E-value=5.6e-05  Score=61.23  Aligned_cols=66  Identities=11%  Similarity=0.176  Sum_probs=42.5

Q ss_pred             CCEEEEEcCCCCCCccchhhhc-CCCCCCEEeccCC-ccCCC-CCccccCCCCCCEEecccCcccccCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKN-NIQGT-IPVELGNLKSLISLDLYNNNISGKIP  146 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n-~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~~P  146 (158)
                      +++++|++++|.+.+..+..+. .+++|+.|++++| .++.. ++..+..+++|++|++++|.+++..+
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~  173 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG  173 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch
Confidence            4577888888877766666664 4677777777777 34321 33334467777777777777655433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.20  E-value=0.00013  Score=59.11  Aligned_cols=64  Identities=23%  Similarity=0.109  Sum_probs=48.8

Q ss_pred             CCEEEEEcCCCCCCcc-chhhhcCCCCCCEEeccCCccCCC-CCccccCCCCCCEEecccCccccc
Q 031545           81 NRVTRLDLGNSNLSGR-LVPELGKLEHLQYLELYKNNIQGT-IPVELGNLKSLISLDLYNNNISGK  144 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~  144 (158)
                      ++++.|++++|++++. ++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.++..
T Consensus       463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            4588889998888763 455567788999999999987654 344456788899999999988754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.19  E-value=8.1e-05  Score=52.11  Aligned_cols=64  Identities=20%  Similarity=0.262  Sum_probs=44.6

Q ss_pred             CCCEEEEEcCCCCCCcc----chhhhcCCCCCCEEeccCCccCCC----CCccccCCCCCCEEec--ccCcccc
Q 031545           80 DNRVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDL--YNNNISG  143 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~L--s~N~l~g  143 (158)
                      ..++++|+|++|.+...    +...+...+.|+.|++++|.++..    +...+...+.|++|++  ++|.+..
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            35678888888887643    234445557788888888888743    3445666778888888  7787764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.11  E-value=3.8e-05  Score=62.22  Aligned_cols=61  Identities=15%  Similarity=0.194  Sum_probs=33.3

Q ss_pred             CEEEEEcCCCCCCccchhhhcC-CCCCCEEeccCCccCCCCCccc-cCCCCCCEEecccCcccc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGK-LEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNISG  143 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~-l~~L~~L~l~~n~l~g~~p~~~-~~l~~L~~L~Ls~N~l~g  143 (158)
                      +++.|++++ .+.+..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus       433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence            455555554 444444444443 5666666666666654333333 446666666666666643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.07  E-value=8.4e-05  Score=52.03  Aligned_cols=60  Identities=18%  Similarity=0.217  Sum_probs=26.4

Q ss_pred             CEEEEEcCCCCCCcc----chhhhcCCCCCCEEec--cCCccCCC----CCccccCCCCCCEEecccCcc
Q 031545           82 RVTRLDLGNSNLSGR----LVPELGKLEHLQYLEL--YKNNIQGT----IPVELGNLKSLISLDLYNNNI  141 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l--~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l  141 (158)
                      .+++|+|++|.+.+.    +...+...+.|+.|++  ++|.++..    +...+...+.|++|++++|.+
T Consensus        94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            345555555555432    2233344444555555  44554422    112223334555555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.07  E-value=0.00066  Score=52.57  Aligned_cols=41  Identities=15%  Similarity=0.288  Sum_probs=28.4

Q ss_pred             CCCCCCEEeccCCccCCCCCccc---cCCCCCCEEecccCcccc
Q 031545          103 KLEHLQYLELYKNNIQGTIPVEL---GNLKSLISLDLYNNNISG  143 (158)
Q Consensus       103 ~l~~L~~L~l~~n~l~g~~p~~~---~~l~~L~~L~Ls~N~l~g  143 (158)
                      .+++|+.|++.+|.+....+..+   ..+++|++|+|+.|.+.+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            46788888888887764333222   246788888888888765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.51  E-value=0.012  Score=38.72  Aligned_cols=39  Identities=26%  Similarity=0.123  Sum_probs=33.5

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG  119 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g  119 (158)
                      .+++.|+|++|.|+...+..|..+++|+.|+|++|.+..
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            368999999999996666778889999999999998763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.69  E-value=0.035  Score=43.33  Aligned_cols=40  Identities=13%  Similarity=0.085  Sum_probs=21.7

Q ss_pred             hhhhcCCCCCCEEeccCCccC-----CCCCccccCCCCCCEEecc
Q 031545           98 VPELGKLEHLQYLELYKNNIQ-----GTIPVELGNLKSLISLDLY  137 (158)
Q Consensus        98 p~~~~~l~~L~~L~l~~n~l~-----g~~p~~~~~l~~L~~L~Ls  137 (158)
                      ...|..+.+|+.+++.+|.+.     ..-+..|.++++|+.+++.
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            445556666666666655543     1223345555666666555

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.41  E-value=0.072  Score=41.54  Aligned_cols=71  Identities=13%  Similarity=0.002  Sum_probs=34.2

Q ss_pred             EEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        83 l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      ++++.+.. .+...-...|..+.+|+.++++.|.+...-...|. ..+|+.+.+..+ +...-...|.++++|+
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~  229 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLK  229 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCC
Confidence            55555553 44433344566666677777766666522222233 455555555533 3312222344444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=93.83  E-value=0.052  Score=41.84  Aligned_cols=54  Identities=19%  Similarity=0.252  Sum_probs=33.3

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCcccc--CCCCCCEEecc
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELG--NLKSLISLDLY  137 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~--~l~~L~~L~Ls  137 (158)
                      +++++|++++|.-. .+++ + .+++|+.|++..+.+.......+.  .+++|+.|+|+
T Consensus       172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            56777888776311 2232 3 367788888877766533222333  67889998885

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=93.61  E-value=0.013  Score=40.83  Aligned_cols=60  Identities=15%  Similarity=0.218  Sum_probs=46.3

Q ss_pred             CCEEEEEcCCCC-CCccchhhhcCC----CCCCEEeccCCc-cCCCCCccccCCCCCCEEecccCc
Q 031545           81 NRVTRLDLGNSN-LSGRLVPELGKL----EHLQYLELYKNN-IQGTIPVELGNLKSLISLDLYNNN  140 (158)
Q Consensus        81 ~~l~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-l~g~~p~~~~~l~~L~~L~Ls~N~  140 (158)
                      .+++.|+|+++. +++.--..+..+    ++|+.|+++++. ++..--..+..+++|++|++++..
T Consensus        85 ~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A           85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            579999999985 776555666665    479999999985 764333456789999999999864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.01  E-value=0.076  Score=37.55  Aligned_cols=59  Identities=14%  Similarity=0.188  Sum_probs=35.3

Q ss_pred             CCEEEEEcCCCCCCccc----hhhhcCCCCCCEEeccCCccCCC----CCccccCCCCCCEEecccC
Q 031545           81 NRVTRLDLGNSNLSGRL----VPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNN  139 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~Ls~N  139 (158)
                      ..++.|+|++|.+.+.-    ...+..=+.|+.|+|++|+++..    +-..+..-+.|++|+|++|
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            45777777777776432    23333445677777777777632    1223444466777777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.27  E-value=0.35  Score=36.76  Aligned_cols=56  Identities=16%  Similarity=0.109  Sum_probs=32.8

Q ss_pred             hhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCC-ccccCCCCCC
Q 031545           99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP-PSLAKLKSLV  156 (158)
Q Consensus        99 ~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P-~~l~~l~~L~  156 (158)
                      ..|..+.+|+.+.+.++.+...-...|.++.+|+.+++..+ ++ .+. ..|.++++|+
T Consensus       280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~  336 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALS  336 (379)
T ss_dssp             TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCC
T ss_pred             cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCC
Confidence            34556677777777766665333456677777777777544 33 222 3455555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.76  E-value=0.25  Score=37.99  Aligned_cols=56  Identities=9%  Similarity=0.004  Sum_probs=26.8

Q ss_pred             hhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        99 ~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      ..|..+.+|+.+++..+ +...-..+|.++++|+.+++..| ++..-...|.++.+|+
T Consensus       314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            34555566666666433 33222345555666666665544 3311122455555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.15  E-value=0.15  Score=39.28  Aligned_cols=72  Identities=7%  Similarity=0.027  Sum_probs=50.8

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      +++.+++..+ ++..-...|.++.+|+.+.+..+ +...-..+|.++++|+.+++..+- + .+...+.++++|+.
T Consensus       321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred             CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence            4666666533 44333567888999999999877 553445689999999999998653 3 33456778777754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=89.78  E-value=0.2  Score=35.35  Aligned_cols=64  Identities=17%  Similarity=0.265  Sum_probs=38.5

Q ss_pred             CCCEEEEEcCCC-CCCcc----chhhhcCCCCCCEEeccCCccCCC----CCccccCCCCCCEEecccCcccc
Q 031545           80 DNRVTRLDLGNS-NLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISG  143 (158)
Q Consensus        80 ~~~l~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g  143 (158)
                      ...+++|+|++| .+...    +...+..=+.|+.|++++|++...    +-..+..-+.|++|+|++|.+..
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            345777777774 65532    334455556777778877777632    12223334677777787777753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.77  E-value=0.75  Score=35.24  Aligned_cols=54  Identities=13%  Similarity=0.256  Sum_probs=25.5

Q ss_pred             hhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCC-ccccCCCCCC
Q 031545          100 ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP-PSLAKLKSLV  156 (158)
Q Consensus       100 ~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P-~~l~~l~~L~  156 (158)
                      .|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++ .+. ..|.++++|+
T Consensus       306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALN  360 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCC
T ss_pred             eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCC
Confidence            4445555666655543 22122334555566666655433 33 222 2455555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=88.30  E-value=0.73  Score=35.32  Aligned_cols=59  Identities=10%  Similarity=0.193  Sum_probs=43.1

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      ++++++|..+ ++..-...|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.++...
T Consensus       312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~  370 (394)
T 4gt6_A          312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ  370 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred             CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence            4667777643 44333567888999999999765 55344568999999999999887543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=87.45  E-value=0.87  Score=34.52  Aligned_cols=57  Identities=14%  Similarity=0.113  Sum_probs=43.9

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN  139 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N  139 (158)
                      .++.+.+.++.++..-...|.++.+|+.+.+..+ +...-..+|.++++|+.+.+..+
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            5788888888887555677889999999999865 44333457899999999888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 66.3 bits (160), Expect = 3e-14
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 40  SEGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDN---RVTRLDLGNSNLS 94
            +  AL  +++ L +P   L SW PT  + C  TW  + C+ D    RV  LDL   NL 
Sbjct: 6   QDKQALLQIKKDLGNP-TTLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63

Query: 95  GR--LVPELGKLEHLQYLELYKN-NIQGTIPVELGNLKSLISLDLYNNN 140
               +   L  L +L +L +    N+ G IP  +  L  L  L + + N
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.3 bits (134), Expect = 1e-10
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 68  NPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGN 127
           N   +          +  LDL N+ + G L   L +L+ L  L +  NN+ G IP + GN
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGN 289

Query: 128 LKSLISLDLYNNN 140
           L+        NN 
Sbjct: 290 LQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 3e-09
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 108 QYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
             L+L  N I GT+P  L  LK L SL++  NN+ G+I P    L+     
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVS 296

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 1e-11
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 51  SLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYL 110
           ++S    +    +  L           +    +T L L  +N+S   +  +  L  LQ L
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 334

Query: 111 ELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
               N +       L NL ++  L   +N IS   P  LA L  +  L
Sbjct: 335 FFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 5e-08
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
            RL   N+ +S   V  L  L ++ +L    N I    P  L NL  +  L L + 
Sbjct: 332 QRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
             +  LG +N++         L+ +  L+  +  I+ +I   +  L +L  ++  NN ++
Sbjct: 24  KMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLT 79

Query: 143 GKIPPSLAKLKSLVFL 158
              P  L  L  LV +
Sbjct: 80  DITP--LKNLTKLVDI 93

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 70  CTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLK 129
                    +   +  L   N+ +S   +  LG L +L  L L  N ++      L +L 
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLT 241

Query: 130 SLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           +L  LDL NN IS   P  L+ L  L  L
Sbjct: 242 NLTDLDLANNQISNLAP--LSGLTKLTEL 268

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 9e-08
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 83  VTRLDLGNSNLSGRLVPEL-GKLEHLQYLELYKNNIQG----TIPVELGNLKSLISLDLY 137
           +  LD+    LS     EL   L+  Q + L    +       I   L    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 138 NNNISGKIPPSLAKL 152
           +N +       + + 
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 2e-07
 Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 9/110 (8%)

Query: 53  SDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGR----LVPELGKLEHLQ 108
              +  + +                   + +  L L + ++S      L   L     L+
Sbjct: 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400

Query: 109 YLELYKNNIQGTIPVELG-----NLKSLISLDLYNNNISGKIPPSLAKLK 153
            L+L  N +     ++L          L  L LY+   S ++   L  L+
Sbjct: 401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 3e-07
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
              LDL N+ ++     +   L++L  L L  N I    P     L  L  L L  N + 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 143 GKIPPSL 149
             +P  +
Sbjct: 93  E-LPEKM 98

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 24/122 (19%), Positives = 37/122 (30%), Gaps = 16/122 (13%)

Query: 50  RSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSN-------------LSGR 96
             L    N L+     +        +  N+  +V +      N              SG 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 97  LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156
                  ++ L Y+ +   NI     +  G   SL  L L  N I+     SL  L +L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 157 FL 158
            L
Sbjct: 199 KL 200

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 8e-07
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 70  CTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLK 129
                  C+    +  L++ N+ L    +P L     L+ L    N++   +P    NLK
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIE--LPAL--PPRLERLIASFNHLA-EVPELPQNLK 327

Query: 130 SLISLDLYNNNISGKIPPSLAKLKSL 155
            L    +  N +  + P     ++ L
Sbjct: 328 QL---HVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 80  DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
           D +   L+L N  LS   +PEL    HL+ L    N++   +P    +LKSL+  +    
Sbjct: 37  DRQAHELELNNLGLSS--LPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 140 NI 141
            +
Sbjct: 92  AL 93

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 4e-06
 Identities = 23/97 (23%), Positives = 30/97 (30%), Gaps = 4/97 (4%)

Query: 62  WDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTI 121
               L                     L   N     +  L  L  L  L+   N I    
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 122 PVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           P  L +L +LI + L NN IS   P  LA   +L  +
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-05
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 62  WDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTI 121
              ++ N            +++T L   ++ +S   +  L  L +L  + L  N I    
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS 211

Query: 122 PVELGNLKSLISLDLYN 138
           P  L N  +L  + L N
Sbjct: 212 P--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           L +   +   K+N+  T+     +L  + +L  +   ++      +  L +L+ L
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGL 68

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 83  VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
             ++  G SN++         L+ +  L  +   +  TI   +  L +LI L+L +N I
Sbjct: 21  AIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI 75

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-05
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 3/47 (6%)

Query: 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP 147
                    L++ +  I       L NLK L +   YN     K+P 
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 1e-04
 Identities = 11/97 (11%), Positives = 21/97 (21%)

Query: 62  WDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTI 121
               +       +           L L  + +           +  +      NN++   
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193

Query: 122 PVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
                     + LD+    I       L  LK L   
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 5e-05
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 76  TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
             ++      ++    NL+  L P+L K      L L +N +       L     L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 136 LYNNN 140
           L    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 9e-05
 Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 2/79 (2%)

Query: 62  WDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGT 120
                 N                      +N    L    L  LE+L  L L +N++  T
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186

Query: 121 IPVELGNLKSLISLDLYNN 139
           IP        L    L+ N
Sbjct: 187 IPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 7e-04
 Identities = 18/98 (18%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 62  WDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELY-KNNIQGT 120
                 N  T   +   +     +      N    L P L              NN+   
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163

Query: 121 IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
               L  L++L +L L  N++   IP        L F 
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 100 ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
           E+ K+     +   K N+   +P +L   K    L L  N +      +L     L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 1e-04
 Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 10/102 (9%)

Query: 60  QSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG 119
            S     +            D  ++    G + +         +   LQ L L  N I+ 
Sbjct: 232 SSALAIALKSWPNLRELGLNDCLLS--ARGAAAVVDAF--SKLENIGLQTLRLQYNEIEL 287

Query: 120 TIPVEL-----GNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156
                L       +  L+ L+L  N    +    + +++ + 
Sbjct: 288 DAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVF 328

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             LDL   NL   +   L     +      ++ +   +       + +  +DL N+ I  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 144 K-IPPSLAKLKSLVFL 158
             +   L++   L  L
Sbjct: 61  STLHGILSQCSKLQNL 76

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 113 YKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
             ++ Q T    L NL +L  LD+ +N +S      LAKL +L  L
Sbjct: 156 NFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 26/96 (27%)

Query: 86  LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI------------- 132
           L L + +L+   +  L +L  + +L+L  N ++   P  L  L+ L              
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 133 ---------SLDLYNNNI-SGKIPPSLAKLKSLVFL 158
                     L L NN +        L     LV L
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 95

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 98  VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138
           +  L  L  LQ L L KN+I   +   L  LK+L  L+L++
Sbjct: 171 IVPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS 209

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.004
 Identities = 21/72 (29%), Positives = 26/72 (36%)

Query: 84  TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
             L L    L          L  LQYL L  N +Q        +L +L  L L+ N IS 
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 144 KIPPSLAKLKSL 155
               +   L SL
Sbjct: 168 VPERAFRGLHSL 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.17
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.05
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.03
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.97
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.88
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.72
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.7
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.56
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.55
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.52
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.43
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.41
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.35
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.35
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.33
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.09
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.02
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.01
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.99
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.96
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.9
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.42
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.05
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.71
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.81
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.17
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.73
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.58

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=1.8e-22  Score=151.82  Aligned_cols=119  Identities=35%  Similarity=0.646  Sum_probs=105.6

Q ss_pred             CCchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC--cccceeeCCCC---CEEEEEcCCCCCCc--cchhhhcCCCCCCE
Q 031545           37 SGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDN---RVTRLDLGNSNLSG--RLVPELGKLEHLQY  109 (158)
Q Consensus        37 ~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c--~~~gv~c~~~~---~l~~L~l~~n~l~~--~~p~~~~~l~~L~~  109 (158)
                      |.++|+++|++||+.+.+|. .+.+|... .|+|  .|.||+|+..+   +|++|+++++++.|  .+|++++++++|++
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~sW~~~-~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCHHHHHHHHHHHHHCCCCC-cCCCCCCC-CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence            67899999999999998875 68899865 5888  59999998643   79999999999998  57899999999999


Q ss_pred             EeccC-CccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545          110 LELYK-NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus       110 L~l~~-n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      |++++ |++.|.+|..|+++++|++|++++|.+.+..|..+..+.+|++
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            99987 8999999999999999999999999999888887887777764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.29  E-value=2.3e-12  Score=89.92  Aligned_cols=75  Identities=27%  Similarity=0.304  Sum_probs=37.6

Q ss_pred             CEEEEEcCCCCCCccc-hhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRL-VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      .++.|+|++|.|++.+ +..|..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..|.++++|+
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~  105 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccc
Confidence            4555566666554322 33344555555555555555544444455555555555555555533333444444444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.1e-11  Score=81.71  Aligned_cols=90  Identities=20%  Similarity=0.193  Sum_probs=69.8

Q ss_pred             CCCCcccceeeCC------------CCCEEEEEcCCCC-CCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCE
Q 031545           67 VNPCTWFHITCNQ------------DNRVTRLDLGNSN-LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLIS  133 (158)
Q Consensus        67 ~~~c~~~gv~c~~------------~~~l~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~  133 (158)
                      +.++...+++|..            ..++++|++++|+ ++...+..|..+++|+.|++++|+++...|..|..+++|++
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            4455567777753            1368899998764 88666678999999999999999999777888999999999


Q ss_pred             EecccCcccccCCccccCCCCCCC
Q 031545          134 LDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus       134 L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      |+|++|.++ .+|...-...+|++
T Consensus        85 L~Ls~N~l~-~l~~~~~~~~~l~~  107 (156)
T d2ifga3          85 LNLSFNALE-SLSWKTVQGLSLQE  107 (156)
T ss_dssp             EECCSSCCS-CCCSTTTCSCCCCE
T ss_pred             eeccCCCCc-ccChhhhccccccc
Confidence            999999999 66665433334543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=2e-11  Score=85.02  Aligned_cols=79  Identities=30%  Similarity=0.389  Sum_probs=71.0

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ..+++.|++++|.+....+..+..+++|+.|++++|++.+..|..|.++++|++|+|++|.+++..|+.|.++++|++|
T Consensus        53 l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l  131 (192)
T d1w8aa_          53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             CceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccc
Confidence            4579999999999998888999999999999999999997777889999999999999999997777788888888753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=2.2e-10  Score=74.55  Aligned_cols=73  Identities=32%  Similarity=0.422  Sum_probs=54.4

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCC--ccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P--~~l~~l~~L~~  157 (158)
                      .++++|++++|.++ .+|+.+..+++|+.|++++|.+++ +| .+..+++|+++++++|.++ .+|  ..++.+++|++
T Consensus        20 ~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~~~~L~~   94 (124)
T d1dcea3          20 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVL   94 (124)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCE
T ss_pred             CCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccC-CCCCchhhcCCCCCCE
Confidence            45788888888887 567778888888888888888883 44 4778888888888888887 333  35666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=1.9e-10  Score=74.84  Aligned_cols=69  Identities=28%  Similarity=0.403  Sum_probs=60.1

Q ss_pred             EEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           85 RLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        85 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .|++++|+++ .++ .+..+++|++|++++|++. .+|+.+..+++|+.|++++|.++ .+|+ ++++++|++|
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~-~~~l~~L~~L   70 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQEL   70 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEE
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc-cccccccCeE
Confidence            6899999998 444 4889999999999999998 68888999999999999999999 5664 8888888753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.97  E-value=9.9e-11  Score=86.80  Aligned_cols=77  Identities=38%  Similarity=0.653  Sum_probs=65.7

Q ss_pred             CCEEEEEcCC-CCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGN-SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++ |++.|.+|+.|.++++|++|++++|++.+..|..+..+..|+++++++|.+.+.+|..++++++|++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccce
Confidence            4788999986 8899999999999999999999999998888877888888888888888887778887877777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.4e-09  Score=78.92  Aligned_cols=74  Identities=26%  Similarity=0.286  Sum_probs=62.3

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      ..++.|+|++|.+++..+..|.++++|+.|++++|+++ .+|. +..+++|++|++++|.++ .+|..+.++++|+.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~  104 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTV  104 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-cccccccccccccccccc-cccccccccccccc
Confidence            46899999999999766678999999999999999998 4553 578999999999999998 55777888887765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.1e-09  Score=80.19  Aligned_cols=77  Identities=27%  Similarity=0.358  Sum_probs=59.8

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|++.+..+..|.++++|+.+++++|++++..|..|..+++|++|++++|.+.+..|..++++++|++
T Consensus       153 ~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             cchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCE
Confidence            35777888888887666677777888888888888888777788888888888888888888666667777777764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.2e-09  Score=74.11  Aligned_cols=74  Identities=26%  Similarity=0.313  Sum_probs=52.7

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc--cccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP--SLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~--~l~~l~~L~~  157 (158)
                      .+++.|++++|.+. .+ +.+..+++|+.|++++|+++...+..+..+++|+.|++++|.++ .+++  .+..+++|++
T Consensus        41 ~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~  116 (162)
T d1a9na_          41 DQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY  116 (162)
T ss_dssp             TCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred             ccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccccccch
Confidence            45788888888887 34 34777888888888888888544444567888888888888877 4443  4666677664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.5e-09  Score=76.20  Aligned_cols=77  Identities=25%  Similarity=0.213  Sum_probs=64.1

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .++..+++++|.+....+..+..++.++.+++++|++++..+..|..+++|++|+|++|.++ .+|+.+..+++|++|
T Consensus       124 ~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA  200 (266)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEE
T ss_pred             cccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEE
Confidence            46788888888888666666777889999999999999777777888999999999999998 888888888877653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.79  E-value=6.1e-09  Score=76.58  Aligned_cols=80  Identities=24%  Similarity=0.341  Sum_probs=68.6

Q ss_pred             CCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecc
Q 031545           68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY  137 (158)
Q Consensus        68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls  137 (158)
                      +.|.+.+|+|...          ..++.|++++|+++...+..|.++++|+.+++++|.+....|..|.++++|++|+++
T Consensus         8 c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_           8 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4578999999642          468899999999995555679999999999999999997778889999999999999


Q ss_pred             cCcccccCCcc
Q 031545          138 NNNISGKIPPS  148 (158)
Q Consensus       138 ~N~l~g~~P~~  148 (158)
                      +|+++ .+|..
T Consensus        88 ~n~l~-~l~~~   97 (305)
T d1xkua_          88 KNQLK-ELPEK   97 (305)
T ss_dssp             SSCCS-BCCSS
T ss_pred             CCccC-cCccc
Confidence            99998 56654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.76  E-value=7.8e-09  Score=75.98  Aligned_cols=60  Identities=30%  Similarity=0.366  Sum_probs=35.4

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      .++.|++++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.++
T Consensus       196 ~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            3455556666655555555555666666666666665 45555666666666666666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=9.8e-09  Score=74.87  Aligned_cols=78  Identities=24%  Similarity=0.207  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ..++.+++++|.+++..+..|..+++|+.|++++|++.+..+..|.++++|+++++++|.+++..|..+.++++|++|
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L  206 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccc
Confidence            357888899999886666778888899999999999987777788889999999999999988888888888887653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.9e-09  Score=70.99  Aligned_cols=75  Identities=21%  Similarity=0.173  Sum_probs=51.0

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCC--ccccCCCCCCEEecccCcccccCCc----cccCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP--VELGNLKSLISLDLYNNNISGKIPP----SLAKLKS  154 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p--~~~~~l~~L~~L~Ls~N~l~g~~P~----~l~~l~~  154 (158)
                      .+++.|++++|.+....+..+..+++|+.|++++|++.. ++  ..+..+++|+++++++|.++ ..|.    .+..+++
T Consensus        63 ~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~  140 (162)
T d1a9na_          63 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQ  140 (162)
T ss_dssp             SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTT
T ss_pred             cchhhhhcccccccCCCccccccccccccceeccccccc-cccccccccccccchhhcCCCccc-cccchHHHHHHHCCC
Confidence            467788888888774444445567788888888888763 33  34667788888888888776 4443    3566666


Q ss_pred             CCC
Q 031545          155 LVF  157 (158)
Q Consensus       155 L~~  157 (158)
                      |++
T Consensus       141 L~~  143 (162)
T d1a9na_         141 VRV  143 (162)
T ss_dssp             CSE
T ss_pred             cCe
Confidence            654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.61  E-value=2.5e-08  Score=74.73  Aligned_cols=72  Identities=31%  Similarity=0.351  Sum_probs=60.4

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ..++.+++++|++.+..  .+..+++|+.|++++|++++ ++ .+.++++|++|++++|.+++. ++ +.++++|+.|
T Consensus       307 ~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l-~~-l~~l~~L~~L  378 (384)
T d2omza2         307 KNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDL-TP-LANLTRITQL  378 (384)
T ss_dssp             TTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBC-GG-GTTCTTCSEE
T ss_pred             cccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCC-hh-hccCCCCCEe
Confidence            46789999999999653  37889999999999999984 54 689999999999999999954 44 7888888754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.56  E-value=7e-08  Score=68.04  Aligned_cols=72  Identities=33%  Similarity=0.506  Sum_probs=59.7

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+++.|++++|.+.+.  ..+..+++|+.|++++|++.+ ++. +..+++|++|++++|+++ .+|+ ++++++|++|
T Consensus       151 ~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L  222 (227)
T d1h6ua2         151 TNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIV  222 (227)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEE
T ss_pred             cccccccccccccccc--hhhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCC-CCcc-cccCCCCCEE
Confidence            4688999999998743  338889999999999999985 544 889999999999999999 5654 7888888754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=7.4e-08  Score=64.57  Aligned_cols=74  Identities=18%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             EEEEcCCCCCCccchhhhcCCCCCCEEeccCCc-cCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           84 TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN-IQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        84 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      +.++.+++++. ..|..+..+++++.|++.+|+ ++..-++.|.++++|+.|++++|+++...|..|.++++|++|
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            35888999888 678889999999999998764 885556679999999999999999997667789999988764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4.3e-08  Score=69.46  Aligned_cols=90  Identities=18%  Similarity=0.256  Sum_probs=66.0

Q ss_pred             CCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCC-ccccCCCCCCEEec
Q 031545           68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP-VELGNLKSLISLDL  136 (158)
Q Consensus        68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p-~~~~~l~~L~~L~L  136 (158)
                      +.|....|.|...          ..+++|++++|.++...+..|.++++|+++++++|.+...+| ..|..++.++++++
T Consensus         6 C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1           6 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             EEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            4456667777531          368899999999985555578899999999999998876544 35777888888876


Q ss_pred             cc-CcccccCCccccCCCCCCC
Q 031545          137 YN-NNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus       137 s~-N~l~g~~P~~l~~l~~L~~  157 (158)
                      .. |.+....+..+.++++|++
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCE
T ss_pred             cccccccccccccccccccccc
Confidence            54 5666566666777777764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.43  E-value=2e-07  Score=69.68  Aligned_cols=69  Identities=29%  Similarity=0.464  Sum_probs=39.6

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      ++++|++++++++. + +.+..+++|++|++++|++++ +|+ ++++++|++|++++|.+.+ +++ ++++++|+
T Consensus        45 ~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~-l~~-l~~L~~L~~L~L~~n~i~~-i~~-l~~l~~L~  113 (384)
T d2omza2          45 QVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIAD-ITP-LANLTNLT  113 (384)
T ss_dssp             TCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred             CCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCC-Ccc-ccCCccccccccccccccc-ccc-cccccccc
Confidence            45666666666652 2 235556666666666666663 332 6666666666666666663 332 45555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.41  E-value=3e-07  Score=63.56  Aligned_cols=72  Identities=35%  Similarity=0.523  Sum_probs=56.1

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      .+++.+++++|.+. .+ +.+..+++++.+++.+|++++ ++ .++++++|++|++++|.++ .+| .+.++++|+.|
T Consensus       128 ~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~-~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         128 TNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS-DIS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEE
T ss_pred             hhhHHhhhhhhhhc-cc-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCC-CCc-cccCCCCCCcC
Confidence            46778888888876 33 357788888999999988884 43 4888999999999999988 455 47888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.35  E-value=4.5e-07  Score=63.22  Aligned_cols=70  Identities=37%  Similarity=0.501  Sum_probs=52.5

Q ss_pred             EEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545           83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL  158 (158)
Q Consensus        83 l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  158 (158)
                      ++.+++++|.+.+  +..+..+++|+.+++++|++.+ ++ .+.++++|+.|++++|.++ .+| .+.++++|++|
T Consensus       136 l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L  205 (210)
T d1h6ta2         136 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVL  205 (210)
T ss_dssp             CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEE
T ss_pred             ccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEE
Confidence            4445555555542  2346678899999999999985 44 3889999999999999998 566 48888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.35  E-value=4.6e-07  Score=62.61  Aligned_cols=71  Identities=34%  Similarity=0.523  Sum_probs=51.3

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      .+++.|++++|.+++. ++ +..+++|+.|++++|.+. .++ .+.+++.|+.+++++|.+.. + +.+.++++|+.
T Consensus        62 ~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~  132 (199)
T d2omxa2          62 NNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNR  132 (199)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred             CCcCcCccccccccCc-cc-ccCCcccccccccccccc-ccc-cccccccccccccccccccc-c-cccchhhhhHH
Confidence            5678888888888754 32 778888888888888877 344 37788888888888887763 3 34666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.33  E-value=4.6e-07  Score=63.15  Aligned_cols=71  Identities=35%  Similarity=0.439  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      ..++++|++++|.+++. + .+..+++|+.|++++|++++ +| .+..+++|+.|++++|.+. .++ .+.++++++
T Consensus        67 l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~  137 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLE  137 (210)
T ss_dssp             CTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTCC
T ss_pred             CCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccccccccccc-ccc-ccccccccc
Confidence            35688899999988853 3 36788889999999998884 55 4788889999999888876 443 456666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.10  E-value=2.3e-06  Score=62.68  Aligned_cols=67  Identities=19%  Similarity=0.242  Sum_probs=53.8

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      .++++|++++|.+. .+|.   .+++|+.|++++|+++ .+|..   +++|++|++++|.++ .+|+....+..|+
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~~L~  350 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLR  350 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCCEEE
T ss_pred             CCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccCeeE
Confidence            46899999999998 6664   3678999999999998 67753   568999999999998 7887665565554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.7e-07  Score=62.04  Aligned_cols=78  Identities=21%  Similarity=0.158  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCCCCCcc--chhhhcCCCCCCEEeccCCccCCCCCc-cccCCCCCCEEecccCcccccCCc-------cc
Q 031545           80 DNRVTRLDLGNSNLSGR--LVPELGKLEHLQYLELYKNNIQGTIPV-ELGNLKSLISLDLYNNNISGKIPP-------SL  149 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~P~-------~l  149 (158)
                      .++++.|++++|+++..  ++..+..+++|+.|++++|.+.. +++ .+-....|+.+++++|.+......       .+
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            35799999999999853  34567789999999999999994 443 333445799999999999865442       24


Q ss_pred             cCCCCCCCC
Q 031545          150 AKLKSLVFL  158 (158)
Q Consensus       150 ~~l~~L~~L  158 (158)
                      ..+++|++|
T Consensus       143 ~~~P~L~~L  151 (162)
T d1koha1         143 ERFPKLLRL  151 (162)
T ss_dssp             TTSTTCCEE
T ss_pred             HHCCCCCEE
Confidence            566776653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.02  E-value=5.2e-06  Score=58.03  Aligned_cols=69  Identities=28%  Similarity=0.398  Sum_probs=34.0

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV  156 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  156 (158)
                      +++.|++.+|+++. + +.+..+++|+.+++++|++.+..|  +..+++|+++++++|.++ .++ .+.++++|+
T Consensus        42 ~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~  110 (227)
T d1h6ua2          42 GITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIK  110 (227)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCC
T ss_pred             CcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-ccccccccc
Confidence            35555555555552 2 235555555555555555553221  455555555555555554 332 234444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.01  E-value=5.2e-06  Score=60.74  Aligned_cols=67  Identities=24%  Similarity=0.264  Sum_probs=47.0

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF  157 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  157 (158)
                      ++++.|++++|+++ .+|..   +.+|+.|++++|+++ .++. +  .+.|++|++++|.+. .+|. ++.+++|++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~  124 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKI  124 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCE
T ss_pred             CCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccccccccc-cccc-hhhhcccee
Confidence            46888999999888 66654   346788888888777 3442 1  246888888888887 6665 466676664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=4e-06  Score=58.94  Aligned_cols=74  Identities=20%  Similarity=0.206  Sum_probs=54.7

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEE-eccCCccCCCCC-ccccCCCCCCEEecccCcccccCCc-cccCCCCCCCC
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYL-ELYKNNIQGTIP-VELGNLKSLISLDLYNNNISGKIPP-SLAKLKSLVFL  158 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L-~l~~n~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~~P~-~l~~l~~L~~L  158 (158)
                      .++.+++++|++. .++.......+++.+ .+.+|+++ .+| ..|.++++|++|++++|.++ .+|. .+.++++|+++
T Consensus       154 ~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         154 ESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRAR  230 (242)
T ss_dssp             SCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESS
T ss_pred             cceeeeccccccc-ccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccC
Confidence            5778899999998 455555555665555 56778888 455 45899999999999999999 5554 57777776643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.96  E-value=3.3e-08  Score=68.89  Aligned_cols=59  Identities=25%  Similarity=0.306  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545           81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      .+++.|++++|.+. .++ .+..+++|+.|++++|++. .+|..+..++.|++|++++|.++
T Consensus        48 ~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          48 KACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             TTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC
T ss_pred             cccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc
Confidence            45667777777766 333 3566666777777766665 34433333334444444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.90  E-value=7.4e-08  Score=67.02  Aligned_cols=58  Identities=22%  Similarity=0.271  Sum_probs=25.4

Q ss_pred             CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545           82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      +++.|++++|.++ .+|..+..++.|+.|++++|+++. ++ .+..+++|+.|++++|.++
T Consensus        71 ~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~  128 (198)
T d1m9la_          71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             TCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHHSSEEEESEEECC
T ss_pred             cccChhhcccccc-cccccccccccccccccccccccc-cc-cccccccccccccccchhc
Confidence            4556666666555 333322223344444444444442 21 2333444444444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=5.1e-05  Score=54.83  Aligned_cols=58  Identities=29%  Similarity=0.403  Sum_probs=33.7

Q ss_pred             CEEEEEcCCC-CCCccchhhhcCCCCCCEEeccCC-ccCCCCCccccCCCCCCEEecccC
Q 031545           82 RVTRLDLGNS-NLSGRLVPELGKLEHLQYLELYKN-NIQGTIPVELGNLKSLISLDLYNN  139 (158)
Q Consensus        82 ~l~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n-~l~g~~p~~~~~l~~L~~L~Ls~N  139 (158)
                      ++++|+++++ .+++.....+.++++|++|+++++ .++......+.++++|+.|+++++
T Consensus       176 ~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            4666666654 355555555666666666666663 455444445556666666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00011  Score=52.96  Aligned_cols=78  Identities=23%  Similarity=0.246  Sum_probs=55.2

Q ss_pred             CCEEEEEcCCC--CCCcc-chhhhcCCCCCCEEeccCC-ccCCCCCccccCCCCCCEEeccc-CcccccCCccccCCCCC
Q 031545           81 NRVTRLDLGNS--NLSGR-LVPELGKLEHLQYLELYKN-NIQGTIPVELGNLKSLISLDLYN-NNISGKIPPSLAKLKSL  155 (158)
Q Consensus        81 ~~l~~L~l~~n--~l~~~-~p~~~~~l~~L~~L~l~~n-~l~g~~p~~~~~l~~L~~L~Ls~-N~l~g~~P~~l~~l~~L  155 (158)
                      +.++.|+++++  .+.+. +..-...+++|+.|+++++ .+++.....+.++++|++|++++ +.++......++++++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            35777777764  33322 2233456789999999886 47767777888899999999998 46766655667777777


Q ss_pred             CCC
Q 031545          156 VFL  158 (158)
Q Consensus       156 ~~L  158 (158)
                      +.|
T Consensus       228 ~~L  230 (284)
T d2astb2         228 KTL  230 (284)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=4.9e-05  Score=50.52  Aligned_cols=49  Identities=16%  Similarity=0.112  Sum_probs=38.8

Q ss_pred             hhhhcCCCCCCEEeccCCccCCC--CCccccCCCCCCEEecccCcccccCCc
Q 031545           98 VPELGKLEHLQYLELYKNNIQGT--IPVELGNLKSLISLDLYNNNISGKIPP  147 (158)
Q Consensus        98 p~~~~~l~~L~~L~l~~n~l~g~--~p~~~~~l~~L~~L~Ls~N~l~g~~P~  147 (158)
                      +..+..++.|+.|++++|+++..  ++..+..+++|+.|++++|.++ .+++
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~  108 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERE  108 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGG
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchh
Confidence            33445689999999999999853  2345678999999999999998 5554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=7.1e-05  Score=56.17  Aligned_cols=64  Identities=22%  Similarity=0.291  Sum_probs=44.9

Q ss_pred             CCCEEEEEcCCCCCCccc----hhhhcC-CCCCCEEeccCCccCCC----CCccccCCCCCCEEecccCcccc
Q 031545           80 DNRVTRLDLGNSNLSGRL----VPELGK-LEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISG  143 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~----p~~~~~-l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g  143 (158)
                      ...+++|++++|.++..-    ...+.. ..+|+.|++++|+++..    ++..+..+++|++|++++|.++.
T Consensus        54 ~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          54 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            346889999998886321    222222 34789999999988743    44567778889999999988763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00023  Score=53.25  Aligned_cols=63  Identities=27%  Similarity=0.304  Sum_probs=46.4

Q ss_pred             CCEEEEEcCCCCCCcc----chhhhc-CCCCCCEEeccCCccCCC----CCccccCCCCCCEEecccCcccc
Q 031545           81 NRVTRLDLGNSNLSGR----LVPELG-KLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISG  143 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~----~p~~~~-~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g  143 (158)
                      .++++|+|++|.+.+.    ++..+. ....|++|++++|.++..    +...+..+++|++|++++|.++.
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            4688999999988643    333443 356799999999998742    34456667899999999998864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.81  E-value=0.0016  Score=47.50  Aligned_cols=62  Identities=21%  Similarity=0.216  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCCCCCcc----chhhhcCCCCCCEEeccCCccCCCCCc----cccC--CCCCCEEecccCccc
Q 031545           81 NRVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQGTIPV----ELGN--LKSLISLDLYNNNIS  142 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~g~~p~----~~~~--l~~L~~L~Ls~N~l~  142 (158)
                      .+++.|++++|.+...    +...+...+.|+.|++++|.+++.-..    .+..  .+.|++|++++|.+.
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            3456666666665422    233445556666666666665532111    1211  245666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.60  E-value=0.0025  Score=46.42  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=16.6

Q ss_pred             CCCCCCEEeccCCccCCC----CCccccCCCCCCEEecccCccc
Q 031545          103 KLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus       103 ~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      ..++|+.|++++|.++..    +...+...++|++|++++|.++
T Consensus       213 ~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         213 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             chhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            344444444444444311    1222334444444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.17  E-value=0.0071  Score=39.72  Aligned_cols=63  Identities=16%  Similarity=0.218  Sum_probs=46.5

Q ss_pred             CCCEEEEEcCCCCCCcc----chhhhcCCCCCCEEeccCCccCCC----CCccccCCCCCCEEecccCccc
Q 031545           80 DNRVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNIS  142 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~  142 (158)
                      ...+++|++++|.+...    +...+...+.|+.|++++|.++..    +-..+..-++|++|++++|.+.
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            45689999999998743    234455567899999999988743    2234566788999999988654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.73  E-value=0.0095  Score=39.06  Aligned_cols=61  Identities=8%  Similarity=0.080  Sum_probs=37.4

Q ss_pred             CCEEEEEcCCCCCCccc----hhhhcCCCCCCEEeccCCccCCC-------CCccccCCCCCCEEecccCcc
Q 031545           81 NRVTRLDLGNSNLSGRL----VPELGKLEHLQYLELYKNNIQGT-------IPVELGNLKSLISLDLYNNNI  141 (158)
Q Consensus        81 ~~l~~L~l~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~g~-------~p~~~~~l~~L~~L~Ls~N~l  141 (158)
                      ..+++|++++|.+.+.-    -..+..-+.|+.|++++|.+...       +...+..-++|+.|+++.+..
T Consensus        72 ~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          72 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            45778888888776432    23455566788888877765421       222334457777787766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.58  E-value=0.067  Score=34.50  Aligned_cols=63  Identities=19%  Similarity=0.252  Sum_probs=39.8

Q ss_pred             CCCEEEEEcCCCCCCccc----hhhhcCCCCCCEEeccCCccCCC----CCccccCCCCCCEEec--ccCccc
Q 031545           80 DNRVTRLDLGNSNLSGRL----VPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDL--YNNNIS  142 (158)
Q Consensus        80 ~~~l~~L~l~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~L--s~N~l~  142 (158)
                      ..++++|++++|.+....    ...+.....++.+++++|.+...    +-..+...++|+.++|  +.|.+.
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCc
Confidence            356888888888876432    23345567788888888877632    2234556677876555  455553