Citrus Sinensis ID: 031586

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MKRMNKKTQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVFAN
Secondary Structure (PSIPRED)
ccccccccccEEEEEHHHccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccEEEcccHHHHHHHHHHHccccccccccccccccccEEEEEEEEEcccEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHcccccEEEEccccHHHEEcccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEccHHHHHHHHHHcccccccccEEEcccHcHcccEEEEEEEcccEEEEEEEEEEcc
Coil and Loop (DISEMBL)
MKRMNKKTQIQIILKEDVAelgkkgqlldvkAGFYrnylhpmgkaqivTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFkvkrkggkgkqifGSVTAQDVVDIIKAQLQRDvdkkivdlpeireTGEYIAQLKLHPEVTARIRLNVFAN
Flexible Loop (DISEMBL)
mkrmnkktqiqIILKedvaelgkkgQLLDVKAGFYrnylhpmgkaqivtpLLLKEMKMEEERIEAEKKRVKEEAQQLALIFEtvgafkvkrkggkgkqifgsvtaqDVVDIIKaqlqrdvdkkivdlpeiretgeyiaqlklhpevtaRIRLNVFAN
Low Complexity Region (SEG)
MKRMNKKTQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLkemkmeeerieaekkrvkeeaQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVFAN
Disordered region (IsUnstruct)
*********IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLK*********************QLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVF**
Disordered Region (DISOPRED)
***********IILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLK**********************LALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVFAN
Disordered Region (DISEMBL)
*********IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVFAN
Disordered Region (DISPRO)
******KTQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVFAN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRMNKKTQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVFAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
P25864	197	50S ribosomal protein L9,	yes	no	0.936	0.746	0.795	2e-60
Q8L803	191	50S ribosomal protein L9,	N/A	no	0.929	0.764	0.707	2e-57
P11894	194	50S ribosomal protein L9,	N/A	no	0.917	0.742	0.798	2e-56
Q6JJ61	199	50S ribosomal protein L9,	N/A	no	0.904	0.713	0.845	3e-55
B7KAD1	152	50S ribosomal protein L9	yes	no	0.910	0.940	0.422	5e-29
B1XN09	152	50S ribosomal protein L9	yes	no	0.923	0.953	0.433	6e-28
B7JUZ9	152	50S ribosomal protein L9	yes	no	0.923	0.953	0.419	1e-26
A2BTQ4	151	50S ribosomal protein L9	yes	no	0.917	0.953	0.405	2e-26
A3PFG1	151	50S ribosomal protein L9	yes	no	0.917	0.953	0.398	3e-26
Q0I6E0	152	50S ribosomal protein L9	yes	no	0.936	0.967	0.389	4e-26

>sp|P25864|RK9_ARATH 50S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana GN=RPL9 PE=1 SV=1

 Score =  230 bits (587), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/147 (79%), Positives = 142/147 (96%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           ++ILKEDV +LGK+GQLLDVKAGF+RN+L P GKAQ++TPLLLKE+KME+ERIEAEK+RV
Sbjct: 51  KVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRV 110

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEI 130
           KEEAQQLA++F+TVGAFKVKRKGGKGK IFGSVTAQD+VDIIK+QLQ+D+DK++V LPEI
Sbjct: 111 KEEAQQLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPEI 170

Query: 131 RETGEYIAQLKLHPEVTARIRLNVFAN 157
           RETGEYIA+LKLHP+VTAR+++NVFAN
Sbjct: 171 RETGEYIAELKLHPDVTARVKINVFAN 197

Binds to the 23S rRNA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L803|RK9_WHEAT 50S ribosomal protein L9, chloroplastic OS=Triticum aestivum GN=RPL9 PE=2 SV=1

 Score =  221 bits (562), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 132/147 (89%), Gaps = 1/147 (0%)

Query: 11  QIILKEDVAEL-GKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKR 69
           Q+ILK+D+ E+ GKKG  + V+AGFYRN+L P GKA ++TP +LKEM++E+ERIEAEKKR
Sbjct: 44  QVILKDDIDEISGKKGDTMKVRAGFYRNFLLPKGKATLLTPDVLKEMQLEQERIEAEKKR 103

Query: 70  VKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
           VKEEAQQLA +FET+GAFKV RKGGKGKQIFGSVTAQD+VDIIK+QL RDVDK++V++PE
Sbjct: 104 VKEEAQQLARVFETIGAFKVPRKGGKGKQIFGSVTAQDLVDIIKSQLNRDVDKRLVEVPE 163

Query: 130 IRETGEYIAQLKLHPEVTARIRLNVFA 156
           IRE GEY+A++KLHP+VTA++RL V+ 
Sbjct: 164 IREVGEYVAEIKLHPDVTAKVRLTVYT 190

Binds to the 23S rRNA.

Triticum aestivum (taxid: 4565)

>sp|P11894|RK9_PEA 50S ribosomal protein L9, chloroplastic OS=Pisum sativum GN=RPL9 PE=2 SV=2

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 134/144 (93%)

Query: 14  LKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEE 73
           LKED+  +GKKG+LLDV+ GF+RN+L P GKAQ+VTP +LKEMK+EEERIEAEK+RV EE
Sbjct: 51  LKEDIVNVGKKGELLDVRVGFFRNFLFPSGKAQLVTPGVLKEMKIEEERIEAEKRRVLEE 110

Query: 74  AQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRET 133
           AQQLAL FET GAFKVKRKGGKGKQIFGSVTAQD+VDIIKAQLQR+VDK+IV+LPEIRET
Sbjct: 111 AQQLALFFETFGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRIVNLPEIRET 170

Query: 134 GEYIAQLKLHPEVTARIRLNVFAN 157
           GEYIA+LKLHP+VTA++R+NV AN
Sbjct: 171 GEYIAELKLHPDVTAKVRVNVIAN 194

Binds to the 23S rRNA.

Pisum sativum (taxid: 3888)

>sp|Q6JJ61|RK9_IPOTF 50S ribosomal protein L9, chloroplastic OS=Ipomoea trifida GN=RPL9 PE=3 SV=1

 Score =  213 bits (543), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 120/142 (84%), Positives = 132/142 (92%)

Query: 16  EDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQ 75
           EDV ELGKKGQL++V+AG+YRNYL PMG AQIVTP LLKEMK+EEERIEAEKKRVKEEAQ
Sbjct: 58  EDVQELGKKGQLMNVRAGYYRNYLLPMGMAQIVTPQLLKEMKIEEERIEAEKKRVKEEAQ 117

Query: 76  QLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGE 135
           QLALIFETVG FKVKRKGGKGKQIFGSVTAQD+VDIIKAQLQR+VDK+IV LPEIRETG 
Sbjct: 118 QLALIFETVGGFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRIVSLPEIRETGA 177

Query: 136 YIAQLKLHPEVTARIRLNVFAN 157
           Y A+LKLHPEVTAR+++ V AN
Sbjct: 178 YTAELKLHPEVTARVQVIVSAN 199

Binds to the 23S rRNA.

Ipomoea trifida (taxid: 35884)

>sp|B7KAD1|RL9_CYAP7 50S ribosomal protein L9 OS=Cyanothece sp. (strain PCC 7424) GN=rplI PE=3 SV=1

 Score =  126 bits (317), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 104/149 (69%), Gaps = 6/149 (4%)

Query: 9   QIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKK 68
           ++Q++L ++V +LGK G L++V  G+ RNYL P G A I TP +L+++   E+R E E++
Sbjct: 4   RVQVVLTKNVNKLGKSGDLVEVAPGYARNYLLPQGIANIATPGILRQV---EQRREKERQ 60

Query: 69  RV---KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIV 125
           R+   ++EA+      +T+G F ++++ G+G+ IFG+VT Q+V D+IK    +++D++ +
Sbjct: 61  RLLAERQEAEARKTALQTIGRFVIRKQVGEGEAIFGTVTTQEVADVIKENTSQEIDRRGI 120

Query: 126 DLPEIRETGEYIAQLKLHPEVTARIRLNV 154
            LPEI +TG Y AQ+KLHPEVTA I + V
Sbjct: 121 TLPEISKTGFYKAQVKLHPEVTAEIEIQV 149

Binds to the 23S rRNA.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

>sp|B1XN09|RL9_SYNP2 50S ribosomal protein L9 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplI PE=3 SV=1

 Score =  123 bits (308), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 107/157 (68%), Gaps = 12/157 (7%)

Query: 4   MNKKTQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERI 63
           M+K+  +Q++L +DV +LG  G L++V  G+ RNYL P G A + TP +L+++   E+R 
Sbjct: 1   MSKR--LQVVLNQDVRKLGNNGDLVEVAPGYARNYLLPQGIASLATPGILRQV---EQRR 55

Query: 64  EAEKKRV-----KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQR 118
           E E++R+       EA+++AL  +TVG   ++++ G+  QIFG+VT QDV D IK +  +
Sbjct: 56  EKERQRLLAELQDAEARKVAL--KTVGKLIIRKQVGEENQIFGTVTTQDVADAIKERAGQ 113

Query: 119 DVDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVF 155
           DVD++ + LPEI +TG Y AQ+KLHPEVTA ++ +V 
Sbjct: 114 DVDRRGITLPEIGKTGSYEAQVKLHPEVTATVQFDVI 150

Binds to the 23S rRNA.

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

>sp|B7JUZ9|RL9_CYAP8 50S ribosomal protein L9 OS=Cyanothece sp. (strain PCC 8801) GN=rplI PE=3 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 105/155 (67%), Gaps = 10/155 (6%)

Query: 4   MNKKTQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEE-- 61
           M+K+  +QI+L + + +LG+ G L++V  G+ RNYL P G   I TP +L++++  +E  
Sbjct: 1   MSKR--VQIVLNKTINKLGQTGDLVEVAPGYARNYLIPQGMGVIATPGILRQVEQRKEKE 58

Query: 62  --RIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRD 119
             R+ AEK+    EA+++AL   T+G F ++++ G+G+ IFG+VT Q+V D I+A   ++
Sbjct: 59  MQRLLAEKQ--AAEARKVAL--STIGRFTIRKQVGEGEAIFGTVTTQEVADAIQAATNQE 114

Query: 120 VDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNV 154
           VD++ + LPEI +TG Y A +KLHPEVTA I + V
Sbjct: 115 VDRRGITLPEISQTGFYKATVKLHPEVTAEIEIQV 149

Binds to the 23S rRNA.

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

>sp|A2BTQ4|RL9_PROMS 50S ribosomal protein L9 OS=Prochlorococcus marinus (strain AS9601) GN=rplI PE=3 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 96/148 (64%), Gaps = 4/148 (2%)

Query: 9   QIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLK--EMKMEEERIEAE 66
           ++Q+ L E +A LGK+G L+DV  G+ RN+L P GKA  VTP +LK  E K E+E+I A 
Sbjct: 4   RVQVALTESIASLGKEGDLVDVAPGYARNFLLPYGKAMNVTPAVLKQIERKKEKEKIAAG 63

Query: 67  KKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVD 126
           K  +K+EA        T+G F +K++ G+   +FG+VT  DV + I+A  ++++D++ + 
Sbjct: 64  K--LKQEALDFQTALSTIGRFTIKKQVGEDGVLFGTVTNGDVAEAIEAATKKEIDRRNIT 121

Query: 127 LPEIRETGEYIAQLKLHPEVTARIRLNV 154
           +P+I   G + A++KLHPEV A + + V
Sbjct: 122 VPDIHNLGAFTAKIKLHPEVNAEVNIEV 149

Binds to the 23S rRNA.

Prochlorococcus marinus (strain AS9601) (taxid: 146891)

>sp|A3PFG1|RL9_PROM0 50S ribosomal protein L9 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplI PE=3 SV=1

 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 97/148 (65%), Gaps = 4/148 (2%)

Query: 9   QIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLK--EMKMEEERIEAE 66
           ++Q+ L E +A LGK+G L++V  G+ RN+L P GKA  VTP +LK  E K E+E+I A+
Sbjct: 4   RVQVALTESIASLGKEGDLVEVAPGYARNFLLPYGKAMNVTPAVLKQIERKKEKEKIAAD 63

Query: 67  KKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVD 126
           K  +K+EA        T+G F +K++ G+   +FG+VT  DV + I+A  ++++D++ + 
Sbjct: 64  K--LKQEALDFQTALSTIGRFTIKKQVGEDGVLFGTVTNGDVAEAIEAATKKEIDRRNIT 121

Query: 127 LPEIRETGEYIAQLKLHPEVTARIRLNV 154
           +P+I   G + A++KLHPEV A + + V
Sbjct: 122 VPDIHNLGSFTAKIKLHPEVNAEVNIEV 149

Binds to the 23S rRNA.

Prochlorococcus marinus (strain MIT 9301) (taxid: 167546)

>sp|Q0I6E0|RL9_SYNS3 50S ribosomal protein L9 OS=Synechococcus sp. (strain CC9311) GN=rplI PE=3 SV=1

 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 97/149 (65%), Gaps = 2/149 (1%)

Query: 9   QIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKK 68
           ++Q++L ED+  LG+ G L+DV  G+ RN+L P GKA  VTP ++K+++    + EAE++
Sbjct: 4   RVQVVLNEDILSLGRNGDLVDVAPGYARNFLLPFGKAVPVTPAVMKQVEHRRAK-EAERQ 62

Query: 69  -RVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDL 127
             +K++A       +T+G F VK++ G    +FG+VT  DV + I++  +++VD++ + +
Sbjct: 63  ATLKQDAVAFRTALDTIGRFTVKKQTGGDDVLFGTVTNGDVAEAIESATKKEVDRRDITV 122

Query: 128 PEIRETGEYIAQLKLHPEVTARIRLNVFA 156
           P+I  TG Y  Q+KLH EVTA I L V +
Sbjct: 123 PDIHRTGSYKVQVKLHSEVTAEINLEVVS 151

Binds to the 23S rRNA.

Synechococcus sp. (strain CC9311) (taxid: 64471)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
351724247	197	uncharacterized protein LOC100500390 [Gl	0.936	0.746	0.870	2e-68
297815636	197	hypothetical protein ARALYDRAFT_484888 [	0.936	0.746	0.836	2e-61
351723405	198	uncharacterized protein LOC100500279 [Gl	0.936	0.742	0.891	2e-61
224118434	198	predicted protein [Populus trichocarpa]	0.961	0.762	0.848	3e-61
225436446	195	PREDICTED: 50S ribosomal protein L9, chl	0.936	0.753	0.897	7e-59
15230544	197	50S ribosomal protein L9 [Arabidopsis th	0.936	0.746	0.795	1e-58
226509700	194	50S ribosomal protein L9 [Zea mays] gi|1	0.929	0.752	0.732	3e-58
297734895	162	unnamed protein product [Vitis vinifera]	0.936	0.907	0.897	6e-58
242066884	194	hypothetical protein SORBIDRAFT_04g03638	0.929	0.752	0.719	9e-58
297600141	187	Os02g0822600 [Oryza sativa Japonica Grou	0.929	0.780	0.732	4e-57

>gi|351724247|ref|NP_001237307.1| uncharacterized protein LOC100500390 [Glycine max] gi|255630210|gb|ACU15460.1| unknown [Glycine max]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/147 (87%), Positives = 143/147 (97%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           +IILKEDV ++GK+GQLLDV+AGF+RNYL PMGKAQ+VTP LLKEMK+EEERIEAEK+RV
Sbjct: 51  KIILKEDVTDVGKQGQLLDVRAGFFRNYLLPMGKAQLVTPQLLKEMKIEEERIEAEKRRV 110

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEI 130
           KEEAQQLALIFETVGAFKVKRKGGKG QIFGSVTAQD+VDIIKAQLQR+VDK+IVDLPEI
Sbjct: 111 KEEAQQLALIFETVGAFKVKRKGGKGNQIFGSVTAQDLVDIIKAQLQREVDKRIVDLPEI 170

Query: 131 RETGEYIAQLKLHPEVTARIRLNVFAN 157
           RETGEYIA+LKLHPEVTAR+R+NVFAN
Sbjct: 171 RETGEYIAELKLHPEVTARVRVNVFAN 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815636|ref|XP_002875701.1| hypothetical protein ARALYDRAFT_484888 [Arabidopsis lyrata subsp. lyrata] gi|297321539|gb|EFH51960.1| hypothetical protein ARALYDRAFT_484888 [Arabidopsis lyrata subsp. lyrata]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/147 (83%), Positives = 143/147 (97%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           ++ILKEDV +LGK+GQLLDVKAGF+RN+L P GKAQ++TPLLLKE+KME+ERIEAEK+RV
Sbjct: 51  KVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRV 110

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEI 130
           KEEAQQLAL+FETVGAFKVKRKGGKGKQIFGSVTAQD+VDIIKAQLQRD+DK++V LPEI
Sbjct: 111 KEEAQQLALVFETVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQRDIDKRLVSLPEI 170

Query: 131 RETGEYIAQLKLHPEVTARIRLNVFAN 157
           RETGEYIA+LKLHP+VTAR+R+NVFAN
Sbjct: 171 RETGEYIAELKLHPDVTARVRINVFAN 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723405|ref|NP_001235742.1| uncharacterized protein LOC100500279 [Glycine max] gi|255629919|gb|ACU15311.1| unknown [Glycine max]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 131/147 (89%), Positives = 143/147 (97%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           +IILKEDVA +GK+GQLLDVKAGF+RNYL PMGKAQ+VT  LLKEMK+EEERIEAEKKRV
Sbjct: 52  KIILKEDVAYVGKQGQLLDVKAGFFRNYLLPMGKAQLVTLQLLKEMKIEEERIEAEKKRV 111

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEI 130
           KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQD+VDIIKAQLQR+VDK+IVDLPEI
Sbjct: 112 KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRIVDLPEI 171

Query: 131 RETGEYIAQLKLHPEVTARIRLNVFAN 157
           RETGEYIA+LKLHPEVTAR+R+NVFAN
Sbjct: 172 RETGEYIAELKLHPEVTARVRVNVFAN 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118434|ref|XP_002331481.1| predicted protein [Populus trichocarpa] gi|118488503|gb|ABK96065.1| unknown [Populus trichocarpa] gi|222873559|gb|EEF10690.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 129/152 (84%), Positives = 146/152 (96%), Gaps = 1/152 (0%)

Query: 6   KKTQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEA 65
           KKT+ +IILKEDV +LGKKGQL+DVKAGFYRN+L P GKAQIVTP L+KEM+MEEERIEA
Sbjct: 48  KKTR-KIILKEDVTDLGKKGQLVDVKAGFYRNFLLPTGKAQIVTPGLVKEMRMEEERIEA 106

Query: 66  EKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIV 125
           EKKRVKEEAQQLALIFETVGAFKVKRKGGKG+QIFG+VTAQD+VDIIKAQ+QRDVDK+IV
Sbjct: 107 EKKRVKEEAQQLALIFETVGAFKVKRKGGKGRQIFGTVTAQDLVDIIKAQIQRDVDKRIV 166

Query: 126 DLPEIRETGEYIAQLKLHPEVTARIRLNVFAN 157
            LP+IRETGEYIA+LKLHPEVTA++RLNV+AN
Sbjct: 167 SLPDIRETGEYIAELKLHPEVTAQVRLNVYAN 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436446|ref|XP_002274311.1| PREDICTED: 50S ribosomal protein L9, chloroplastic [Vitis vinifera]

 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 132/147 (89%), Positives = 143/147 (97%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           +IILKEDVAELGKKGQLLDVKAG+YRNYL PMG AQIVTPLLLKEM+MEEERIEAEKKRV
Sbjct: 49  KIILKEDVAELGKKGQLLDVKAGYYRNYLQPMGMAQIVTPLLLKEMRMEEERIEAEKKRV 108

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEI 130
           KEEAQQ+AL+FETVGAFKVKRKGGKGKQIFGSVTAQD+ DIIKAQLQRDVDK+IV LPEI
Sbjct: 109 KEEAQQMALMFETVGAFKVKRKGGKGKQIFGSVTAQDLTDIIKAQLQRDVDKRIVSLPEI 168

Query: 131 RETGEYIAQLKLHPEVTARIRLNVFAN 157
           RETGEY+A+LKLHPEVTAR+RLNV+AN
Sbjct: 169 RETGEYVAELKLHPEVTARVRLNVYAN 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230544|ref|NP_190075.1| 50S ribosomal protein L9 [Arabidopsis thaliana] gi|133028|sp|P25864.1|RK9_ARATH RecName: Full=50S ribosomal protein L9, chloroplastic; AltName: Full=CL9; Flags: Precursor gi|189096132|pdb|3BBO|J Chain J, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome gi|16499|emb|CAA77480.1| plastid ribosomal protein CL9 [Arabidopsis thaliana] gi|16501|emb|CAA77594.1| Chloroplast ribosomal protein CL9 [Arabidopsis thaliana] gi|9798392|emb|CAC03539.1| RP19 gene for chloroplast ribosomal protein CL9 [Arabidopsis thaliana] gi|24030284|gb|AAN41314.1| putative RP19 gene for chloroplast ribosomal protein CL9 [Arabidopsis thaliana] gi|332644444|gb|AEE77965.1| 50S ribosomal protein L9 [Arabidopsis thaliana]

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/147 (79%), Positives = 142/147 (96%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           ++ILKEDV +LGK+GQLLDVKAGF+RN+L P GKAQ++TPLLLKE+KME+ERIEAEK+RV
Sbjct: 51  KVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRV 110

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEI 130
           KEEAQQLA++F+TVGAFKVKRKGGKGK IFGSVTAQD+VDIIK+QLQ+D+DK++V LPEI
Sbjct: 111 KEEAQQLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPEI 170

Query: 131 RETGEYIAQLKLHPEVTARIRLNVFAN 157
           RETGEYIA+LKLHP+VTAR+++NVFAN
Sbjct: 171 RETGEYIAELKLHPDVTARVKINVFAN 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226509700|ref|NP_001151379.1| 50S ribosomal protein L9 [Zea mays] gi|194703124|gb|ACF85646.1| unknown [Zea mays] gi|195646304|gb|ACG42620.1| 50S ribosomal protein L9 [Zea mays] gi|413939365|gb|AFW73916.1| 50S ribosomal protein L9 isoform 1 [Zea mays] gi|413939366|gb|AFW73917.1| 50S ribosomal protein L9 isoform 2 [Zea mays]

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/146 (73%), Positives = 132/146 (90%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           Q+IL +D+ E+GKKG  L V+AGFYRN+L P GKA ++TP +LKEM++E+ERIEAEKKRV
Sbjct: 48  QVILTDDIEEVGKKGDTLKVRAGFYRNFLLPKGKATLLTPEVLKEMQLEQERIEAEKKRV 107

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEI 130
           KE+AQQLA +FET+GAFK+ RKGGKGKQIFGSVTAQDVVDIIK+QL RDVDKK+V +PEI
Sbjct: 108 KEDAQQLARVFETIGAFKLPRKGGKGKQIFGSVTAQDVVDIIKSQLNRDVDKKLVTVPEI 167

Query: 131 RETGEYIAQLKLHPEVTARIRLNVFA 156
           RE GEY+A++KLHP+VTAR+RLNV+A
Sbjct: 168 REIGEYVAEIKLHPDVTARVRLNVYA 193

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734895|emb|CBI17129.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 132/147 (89%), Positives = 143/147 (97%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           +IILKEDVAELGKKGQLLDVKAG+YRNYL PMG AQIVTPLLLKEM+MEEERIEAEKKRV
Sbjct: 16  KIILKEDVAELGKKGQLLDVKAGYYRNYLQPMGMAQIVTPLLLKEMRMEEERIEAEKKRV 75

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEI 130
           KEEAQQ+AL+FETVGAFKVKRKGGKGKQIFGSVTAQD+ DIIKAQLQRDVDK+IV LPEI
Sbjct: 76  KEEAQQMALMFETVGAFKVKRKGGKGKQIFGSVTAQDLTDIIKAQLQRDVDKRIVSLPEI 135

Query: 131 RETGEYIAQLKLHPEVTARIRLNVFAN 157
           RETGEY+A+LKLHPEVTAR+RLNV+AN
Sbjct: 136 RETGEYVAELKLHPEVTARVRLNVYAN 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242066884|ref|XP_002454731.1| hypothetical protein SORBIDRAFT_04g036380 [Sorghum bicolor] gi|241934562|gb|EES07707.1| hypothetical protein SORBIDRAFT_04g036380 [Sorghum bicolor]

 Score =  228 bits (580), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 105/146 (71%), Positives = 131/146 (89%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           Q+IL +D+  +GKKG  + V+AGFYRN+L P GKA ++TP +LKEM++E+ERIEAEKKRV
Sbjct: 48  QVILTDDIEAVGKKGDTMKVRAGFYRNFLLPKGKATLLTPEVLKEMQLEQERIEAEKKRV 107

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEI 130
           KE+AQQLA +FET+GAFK+ RKGGKGKQIFGSVTAQDVVDIIK+QL RDVDKK+V +PEI
Sbjct: 108 KEDAQQLARVFETIGAFKIPRKGGKGKQIFGSVTAQDVVDIIKSQLNRDVDKKLVTVPEI 167

Query: 131 RETGEYIAQLKLHPEVTARIRLNVFA 156
           RE GEY+A++KLHP+VTAR+RLNV+A
Sbjct: 168 REIGEYVAEIKLHPDVTARVRLNVYA 193

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297600141|ref|NP_001048561.2| Os02g0822600 [Oryza sativa Japonica Group] gi|48716281|dbj|BAD22896.1| putative 50S ribosomal protein L9, chloroplast [Oryza sativa Japonica Group] gi|215701247|dbj|BAG92671.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737700|dbj|BAG96830.1| unnamed protein product [Oryza sativa Japonica Group] gi|215764977|dbj|BAG86674.1| unnamed protein product [Oryza sativa Japonica Group] gi|255671364|dbj|BAF10475.2| Os02g0822600 [Oryza sativa Japonica Group]

 Score =  226 bits (575), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 107/146 (73%), Positives = 132/146 (90%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           Q+IL +D+AE+GKKG  L V+AGFYRN+L P GKA ++TP +LKEM++E+ERI+AEKKRV
Sbjct: 41  QVILTDDIAEVGKKGDTLKVRAGFYRNFLLPKGKATLLTPEVLKEMQVEQERIDAEKKRV 100

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEI 130
           KEEAQQLA +FET+GAFKV RKGGKGKQIFGSVTAQD+VDIIK+QL RDVDK++V +PEI
Sbjct: 101 KEEAQQLARVFETIGAFKVPRKGGKGKQIFGSVTAQDLVDIIKSQLNRDVDKRLVTVPEI 160

Query: 131 RETGEYIAQLKLHPEVTARIRLNVFA 156
           RE GEYIA++KLHPEVTA++RL V+A
Sbjct: 161 REIGEYIAEIKLHPEVTAQVRLTVYA 186

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2082127	197	RPL9 "ribosomal protein L9" [A	0.961	0.766	0.664	1.5e-49
TIGR_CMR|CHY_0039	151	CHY_0039 "ribosomal protein L9	0.917	0.953	0.308	4.2e-15
UNIPROTKB|P66315	152	rplI "50S ribosomal protein L9	0.929	0.960	0.324	7.9e-14
UNIPROTKB|Q9KUY9	149	rplI "50S ribosomal protein L9	0.929	0.979	0.302	9.1e-13
TIGR_CMR|VC_0369	149	VC_0369 "ribosomal protein L9"	0.929	0.979	0.302	9.1e-13
TIGR_CMR|SPO_2283	200	SPO_2283 "ribosomal protein L9	0.910	0.715	0.301	1.2e-12
UNIPROTKB|P0A7R1	149	rplI "50S ribosomal subunit pr	0.929	0.979	0.302	1.5e-12
TIGR_CMR|CBU_0867	152	CBU_0867 "ribosomal protein L9	0.910	0.940	0.285	2.4e-12
TIGR_CMR|SO_3927	150	SO_3927 "ribosomal protein L9"	0.929	0.973	0.288	2.4e-12
TIGR_CMR|BA_5718	148	BA_5718 "ribosomal protein L9"	0.917	0.972	0.273	3.1e-12

TAIR|locus:2082127 RPL9 "ribosomal protein L9" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 101/152 (66%), Positives = 124/152 (81%)

Query:     6 KKTQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXX 65
             KK + ++ILKEDV +LGK+GQLLDVKAGF+RN+L P GKAQ++TPLLL            
Sbjct:    47 KKLR-KVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEA 105

Query:    66 XXXXXXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIV 125
                      QQLA++F+TVGAFKVKRKGGKGK IFGSVTAQD+VDIIK+QLQ+D+DK++V
Sbjct:   106 EKQRVKEEAQQLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLV 165

Query:   126 DLPEIRETGEYIAQLKLHPEVTARIRLNVFAN 157
              LPEIRETGEYIA+LKLHP+VTAR+++NVFAN
Sbjct:   166 SLPEIRETGEYIAELKLHPDVTARVKINVFAN 197

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0000311 "plastid large ribosomal subunit" evidence=TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TIGR_CMR|CHY_0039 CHY_0039 "ribosomal protein L9" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 45/146 (30%), Positives = 79/146 (54%)

Query:    10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
             +++IL  +V +LGKKG +++V  G+ RNYL   G A   T   L                
Sbjct:     1 MKVILLTEVKKLGKKGDVVEVAEGYGRNYLIAKGLAVEATEGKLKELQQQKEAANRRKEK 60

Query:    70 XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                  + LA   + +    +  KGG+  ++FG++T++D+ + ++   Q  +DK+ +DL E
Sbjct:    61 ELQEARSLAEKLKNI-ELVLYGKGGENGKLFGAITSKDIAEALEKNYQIKIDKRKLDLKE 119

Query:   130 -IRETGEYIAQLKLHPEVTARIRLNV 154
              I+  G Y  ++KLHPEVTA++++ V
Sbjct:   120 NIKALGVYTVEVKLHPEVTAKLKVAV 145

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P66315 rplI "50S ribosomal protein L9" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 49/151 (32%), Positives = 72/151 (47%)

Query:    10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
             +++IL  DV  LG  G  ++VK G+ RN+L P G A + +                    
Sbjct:     1 MKLILTADVDHLGSIGDTVEVKDGYGRNFLLPRGLAIVASRGAQKQADEIRRARETKSVR 60

Query:    70 XXXXXQQLALIFETVG--AFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDL 127
                   ++    E +G  A  VK     GK +FGSVTA DVV  IK     ++DK+IV L
Sbjct:    61 DLEHANEIKAAIEALGPIALPVKTSADSGK-LFGSVTAADVVAAIKKAGGPNLDKRIVRL 119

Query:   128 PE--IRETGEYIAQLKLHPEVTARIRLNVFA 156
             P+  I+  G +   + LHPE+   + L+V A
Sbjct:   120 PKTHIKAVGTHFVSVHLHPEIDVEVSLDVVA 150

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q9KUY9 rplI "50S ribosomal protein L9" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 45/149 (30%), Positives = 69/149 (46%)

Query:    10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
             +Q+IL + +  LG  G  ++VK+G+ RN+L P GKA + T   +                
Sbjct:     1 MQVILLDKIGNLGSLGDTVNVKSGYARNFLIPQGKAVMATKANVAMFESRRAELEAKVAE 60

Query:    70 XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                  Q  A     + A  +  K G   ++FGS+  +D+ D I A   + V K  V LPE
Sbjct:    61 QLAAAQTRADQVNALEAVVIASKAGDEGKLFGSIGTRDIADAITAAGVK-VSKSEVRLPE 119

Query:   130 --IRETGEYIAQLKLHPEVTARIRLNVFA 156
               +R  G Y   ++LH EV A  ++ V A
Sbjct:   120 GALRNVGAYEVSVQLHSEVFATAKVQVVA 148

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_0369 VC_0369 "ribosomal protein L9" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 45/149 (30%), Positives = 69/149 (46%)

Query:    10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
             +Q+IL + +  LG  G  ++VK+G+ RN+L P GKA + T   +                
Sbjct:     1 MQVILLDKIGNLGSLGDTVNVKSGYARNFLIPQGKAVMATKANVAMFESRRAELEAKVAE 60

Query:    70 XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                  Q  A     + A  +  K G   ++FGS+  +D+ D I A   + V K  V LPE
Sbjct:    61 QLAAAQTRADQVNALEAVVIASKAGDEGKLFGSIGTRDIADAITAAGVK-VSKSEVRLPE 119

Query:   130 --IRETGEYIAQLKLHPEVTARIRLNVFA 156
               +R  G Y   ++LH EV A  ++ V A
Sbjct:   120 GALRNVGAYEVSVQLHSEVFATAKVQVVA 148

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SPO_2283 SPO_2283 "ribosomal protein L9" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 44/146 (30%), Positives = 71/146 (48%)

Query:    10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
             +Q+IL E VA+LG+ G ++DVK+G+ RN+L P  KA + +   +                
Sbjct:     1 MQVILLERVAKLGQMGDVVDVKSGYARNFLLPQSKALVASDANIAQFEAQKAQLEARNLE 60

Query:    70 XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDL-P 128
                  + LA+  +    F V R       ++GSVT +D  +    +    VDKK + L  
Sbjct:    61 TKQEAEALAVKLDGQ-QFVVIRSASDAGALYGSVTPRDAAEAA-TEAGFSVDKKQIALIA 118

Query:   129 EIRETGEYIAQLKLHPEVTARIRLNV 154
              I++ G +   ++LHPEV   I LN+
Sbjct:   119 PIKDLGLHTVAVRLHPEVEVSINLNI 144

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

UNIPROTKB|P0A7R1 rplI "50S ribosomal subunit protein L9" [Escherichia coli K-12 (taxid:83333)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 45/149 (30%), Positives = 69/149 (46%)

Query:    10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
             +Q+IL + VA LG  G  ++VKAG+ RN+L P GKA   T   +                
Sbjct:     1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE 60

Query:    70 XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                     A     +    +  K G   ++FGS+  +D+ D + A    +V K  V LP 
Sbjct:    61 VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAA-GVEVAKSEVRLPN 119

Query:   130 --IRETGEYIAQLKLHPEVTARIRLNVFA 156
               +R TGE+    ++H EV A++ +NV A
Sbjct:   120 GVLRTTGEHEVSFQVHSEVFAKVIVNVVA 148

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

TIGR_CMR|CBU_0867 CBU_0867 "ribosomal protein L9" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 42/147 (28%), Positives = 73/147 (49%)

Query:    10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
             +++IL+E VA LG  G  + VK G+ RN+L P+GKA   TP  +                
Sbjct:     1 MKLILQEKVANLGNIGDQVVVKPGYARNFLLPLGKAVPATPEHIAEFEKQRAELEKAAAE 60

Query:    70 XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                  +  A   E   +FK+        ++FGS+  +++   I  +   +++K+ VDL +
Sbjct:    61 LLAKAKARAKKLEDK-SFKITANASDEGRLFGSIGPREIAQAI-TEAGIEIEKREVDLSQ 118

Query:   130 --IRETGEYIAQLKLHPEVTARIRLNV 154
               IR+ GEY   L+LH +V+  +++ V
Sbjct:   119 GPIRQVGEYEVPLRLHTDVSVNVKIEV 145

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|SO_3927 SO_3927 "ribosomal protein L9" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 43/149 (28%), Positives = 71/149 (47%)

Query:    10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
             + +IL + +A LG  G  + VKAG+ RNYL P GKA +     +                
Sbjct:     1 MNVILLDKIANLGNLGDQVAVKAGYARNYLLPQGKAVVANESNVKVFEARRAELEAKLAA 60

Query:    70 XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP- 128
                   Q A     + A  +  K G   ++FGSV  +D+ D + A    ++ K  V LP 
Sbjct:    61 DLAAANQRAEKIAALEAVVIASKAGDEGKLFGSVGNRDIADAVTAA-GVELAKSEVRLPL 119

Query:   129 -EIRETGEYIAQLKLHPEVTARIRLNVFA 156
               +R TG++  +++LH EV A +++++ A
Sbjct:   120 GALRTTGDFEVEVQLHTEVKAVVKVSIVA 148

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|BA_5718 BA_5718 "ribosomal protein L9" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 40/146 (27%), Positives = 75/146 (51%)

Query:    10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
             +++I  +DV   GKKG++ +V  G+  N+L   G A   T   +                
Sbjct:     1 MKVIFLKDVKGKGKKGEVKNVPDGYANNFLLKQGLAAEATNSSMKTLEAQKRKEEKDAAA 60

Query:    70 XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                  +QL    E +   ++K K G+G ++FGS+T++ +VD ++   +  +DK+  ++ +
Sbjct:    61 ELESAKQLKETLEKL-TVELKAKSGEGGRLFGSITSKQIVDAMQKSHKIKLDKRKFEMDD 119

Query:   130 -IRETGEYIAQLKLHPEVTARIRLNV 154
              IR  G     +KLHP+VTA ++++V
Sbjct:   120 AIRALGYTNVTVKLHPQVTATVKVHV 145

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0A499	RL9_THEEB	No assigned EC number	0.3624	0.9490	0.9802	yes	no
Q31K30	RL9_SYNE7	No assigned EC number	0.3918	0.9426	0.9736	yes	no
A3PFG1	RL9_PROM0	No assigned EC number	0.3986	0.9171	0.9536	yes	no
Q317W9	RL9_PROM9	No assigned EC number	0.3851	0.9171	0.9536	yes	no
B8HS22	RL9_CYAP4	No assigned EC number	0.3783	0.9426	0.9736	yes	no
A2BZ59	RL9_PROM5	No assigned EC number	0.3783	0.9171	0.9536	yes	no
B1KU91	RL9_CLOBM	No assigned EC number	0.3648	0.9108	0.9727	yes	no
A2CDR6	RL9_PROM3	No assigned EC number	0.3783	0.9426	0.9736	yes	no
Q115S4	RL9_TRIEI	No assigned EC number	0.3758	0.9490	0.9802	yes	no
Q6JJ61	RK9_IPOTF	No assigned EC number	0.8450	0.9044	0.7135	N/A	no
A2BTQ4	RL9_PROMS	No assigned EC number	0.4054	0.9171	0.9536	yes	no
Q3MGD1	RL9_ANAVT	No assigned EC number	0.3624	0.9490	0.9802	yes	no
B0TA56	RL9_HELMI	No assigned EC number	0.3355	0.9044	0.9594	yes	no
B2IVH8	RL9_NOSP7	No assigned EC number	0.3378	0.9426	0.9736	yes	no
B1XN09	RL9_SYNP2	No assigned EC number	0.4331	0.9235	0.9539	yes	no
Q3AUG8	RL9_SYNS9	No assigned EC number	0.3783	0.9426	0.9736	yes	no
Q2JUA5	RL9_SYNJA	No assigned EC number	0.4109	0.9235	0.9477	yes	no
Q8YZA0	RL9_NOSS1	No assigned EC number	0.3624	0.9490	0.9802	yes	no
Q3AGL2	RL9_SYNSC	No assigned EC number	0.3877	0.9235	0.9539	yes	no
A2C5D9	RL9_PROM1	No assigned EC number	0.3892	0.9363	0.9671	yes	no
B0JQ94	RL9_MICAN	No assigned EC number	0.3377	0.9235	0.9539	yes	no
B7JUZ9	RL9_CYAP8	No assigned EC number	0.4193	0.9235	0.9539	yes	no
A3DHN0	RL9_CLOTH	No assigned EC number	0.3698	0.9171	0.9729	yes	no
Q0I6E0	RL9_SYNS3	No assigned EC number	0.3892	0.9363	0.9671	yes	no
Q2RM68	RL9_MOOTA	No assigned EC number	0.3825	0.9235	0.9666	yes	no
Q5N1S9	RL9_SYNP6	No assigned EC number	0.3918	0.9426	0.9736	yes	no
P25864	RK9_ARATH	No assigned EC number	0.7959	0.9363	0.7461	yes	no
Q8L803	RK9_WHEAT	No assigned EC number	0.7074	0.9299	0.7643	N/A	no
Q2JMI4	RL9_SYNJB	No assigned EC number	0.3835	0.9235	0.9731	yes	no
Q46IB6	RL9_PROMT	No assigned EC number	0.3892	0.9363	0.9671	yes	no
A8G7H8	RL9_PROM2	No assigned EC number	0.3918	0.9171	0.9536	yes	no
Q7UZJ1	RL9_PROMP	No assigned EC number	0.3918	0.9171	0.9536	yes	no
A5GWP0	RL9_SYNR3	No assigned EC number	0.3986	0.9235	0.9539	yes	no
Q7U3Q2	RL9_SYNPX	No assigned EC number	0.3892	0.9363	0.9671	yes	no
A5GPH9	RL9_SYNPW	No assigned EC number	0.3825	0.9363	0.9671	yes	no
B0CAV7	RL9_ACAM1	No assigned EC number	0.3892	0.9108	0.9407	yes	no
B7KAD1	RL9_CYAP7	No assigned EC number	0.4228	0.9108	0.9407	yes	no
P11894	RK9_PEA	No assigned EC number	0.7986	0.9171	0.7422	N/A	no
B1WTN1	RL9_CYAA5	No assigned EC number	0.4026	0.9108	0.9407	yes	no
B5YIM4	RL9_THEYD	No assigned EC number	0.3529	0.8917	0.9523	yes	no
Q7V9J9	RL9_PROMA	No assigned EC number	0.3881	0.9299	0.9605	yes	no
Q1D289	RL9_MYXXD	No assigned EC number	0.3825	0.9044	0.9659	yes	no
Q8A5S7	RL9_BACTN	No assigned EC number	0.3552	0.8980	0.9591	yes	no
A9BDB8	RL9_PROM4	No assigned EC number	0.3581	0.9426	0.9736	yes	no
Q7V406	RL9_PROMM	No assigned EC number	0.3783	0.9426	0.9736	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.5__880__AT3G44890.1	annotation not avaliable (197 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_503640.1	annotation not avaliable (344 aa)	•			•	•		•		0.987
	fgenesh2_kg.1__466__AT1G05190.1	annotation not avaliable (223 aa)				•	•		•		0.975
	fgenesh2_kg.1__3647__AT1G35680.1	annotation not avaliable (215 aa)	•			•	•		•		0.971
	fgenesh2_kg.1__3924__AT1G48350.1	annotation not avaliable (170 aa)				•	•		•		0.968
	fgenesh2_kg.6__3575__AT4G01310.1	annotation not avaliable (264 aa)				•	•		•		0.968
	scaffold_201113.1	annotation not avaliable (101 aa)	•			•			•		0.965
	fgenesh2_kg.4__2465__AT2G43030.1	annotation not avaliable (271 aa)				•	•		•		0.963
	fgenesh2_kg.2__2158__AT1G78630.1	annotation not avaliable (242 aa)				•	•		•		0.947
	fgenesh2_kg.6__3223__AT4G04350.1	At4g04350-like protein (972 aa)	•			•	•		•		0.939
	scaffold_303832.1	annotation not avaliable (297 aa)				•	•		•		0.937

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
PRK00137	147	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	5e-36
COG0359	148	COG0359, RplI, Ribosomal protein L9 [Translation,	3e-32
CHL00160	153	CHL00160, rpl9, ribosomal protein L9; Provisional	2e-29
TIGR00158	148	TIGR00158, L9, ribosomal protein L9	3e-23
pfam03948	86	pfam03948, Ribosomal_L9_C, Ribosomal protein L9, C	1e-20
pfam01281	48	pfam01281, Ribosomal_L9_N, Ribosomal protein L9, N	2e-14
PRK14538	838	PRK14538, PRK14538, putative bifunctional signalin	5e-07

>gnl|CDD|234659 PRK00137, rplI, 50S ribosomal protein L9; Reviewed

 Score =  121 bits (306), Expect = 5e-36
 Identities = 60/145 (41%), Positives = 91/145 (62%), Gaps = 3/145 (2%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           ++IL EDV  LGKKG +++VK G+ RN+L P GKA   T   LK+++     +EA+    
Sbjct: 2   KVILLEDVKNLGKKGDVVEVKDGYARNFLIPQGKAVRATKGNLKQLEARRAELEAKAAEE 61

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE- 129
             EA+ LA   E +    +K K G+  ++FGSVT +D+ + +K Q   ++DK+ ++LP  
Sbjct: 62  LAEAEALAEKLEGL-TVTIKAKAGEDGKLFGSVTTKDIAEALKKQ-GIEIDKRKIELPGP 119

Query: 130 IRETGEYIAQLKLHPEVTARIRLNV 154
           I+  GEY   +KLHPEVTA I++NV
Sbjct: 120 IKTLGEYEVPVKLHPEVTATIKVNV 144

Length = 147

>gnl|CDD|223436 COG0359, RplI, Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]

 Score =  111 bits (280), Expect = 3e-32
 Identities = 53/145 (36%), Positives = 86/145 (59%), Gaps = 3/145 (2%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           ++IL EDV  LGKKG +++VK G+ RN+L P G A   T   LK ++    ++E +    
Sbjct: 2   KVILLEDVKGLGKKGDIVEVKDGYARNFLIPKGLAVPATKGNLKLLEARRAKLEKKAAEE 61

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE- 129
             EA+ L    E     ++  K G+  ++FGSVT++D+ + +KA     +DK+ + LP  
Sbjct: 62  LAEAEALKEKLEG-KTVEIAVKAGEDGKLFGSVTSKDIAEALKAA-GFKLDKRKIRLPNG 119

Query: 130 IRETGEYIAQLKLHPEVTARIRLNV 154
           I+  GE+  ++KLH EVTA +++NV
Sbjct: 120 IKTLGEHEVEVKLHEEVTATVKVNV 144

Length = 148

>gnl|CDD|214378 CHL00160, rpl9, ribosomal protein L9; Provisional

 Score =  104 bits (262), Expect = 2e-29
 Identities = 58/148 (39%), Positives = 96/148 (64%)

Query: 7   KTQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAE 66
           K +IQ+ILKE++ +LGK G ++ VK+G+ RNYL P   A++ T   LK+ KM ++ ++ +
Sbjct: 3   KKKIQVILKENIQKLGKSGTVIKVKSGYARNYLIPNKMAKVATQGSLKQQKMYQKILDLK 62

Query: 67  KKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVD 126
            K  KE+  ++  + E +  F VK+K G+  QIFGSVT +++  IIK +   D++K+ ++
Sbjct: 63  LKEAKEKCLKVKQLLEEIQKFSVKKKVGENNQIFGSVTEKEISQIIKNKTNIDLEKQNIE 122

Query: 127 LPEIRETGEYIAQLKLHPEVTARIRLNV 154
           LPEI+  G Y  ++KL  +V A I L +
Sbjct: 123 LPEIKTIGIYNIEIKLTSDVKANINLQI 150

Length = 153

>gnl|CDD|129262 TIGR00158, L9, ribosomal protein L9

 Score = 89.0 bits (221), Expect = 3e-23
 Identities = 53/147 (36%), Positives = 88/147 (59%), Gaps = 4/147 (2%)

Query: 10  IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKR 69
           +++IL EDVA LGK+G +++VK G+ RN+L P G A   T   ++  +   +++E +   
Sbjct: 1   MKVILLEDVANLGKRGDVVEVKDGYARNFLIPKGLAVPATKKNIEFFEARRKKLEEKLAA 60

Query: 70  VKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
            K  A +L  + E  G   + +K G   ++FGS+T + + D +KA    D+DKK ++LP+
Sbjct: 61  NKAAAARLKEVLEL-GTLTISKKVGDEGKLFGSITTKQIADALKAAGL-DLDKKKIELPD 118

Query: 130 --IRETGEYIAQLKLHPEVTARIRLNV 154
             IR TGE+   +KLH EV A +++ V
Sbjct: 119 GVIRTTGEHEVTIKLHEEVFAVLKVIV 145

Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 148

>gnl|CDD|146531 pfam03948, Ribosomal_L9_C, Ribosomal protein L9, C-terminal domain

 Score = 80.2 bits (199), Expect = 1e-20
 Identities = 36/85 (42%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE- 129
             EA+ LA   E +    +K K G+  ++FGSVT +D+ + +KAQ   ++DKK ++LPE 
Sbjct: 1   LAEAEALAEKLEGLT-VTIKAKAGEDGKLFGSVTTKDIAEALKAQ-GIEIDKKKIELPEP 58

Query: 130 IRETGEYIAQLKLHPEVTARIRLNV 154
           I+  GEY  ++KLHP+VTA I++ V
Sbjct: 59  IKTLGEYEVEVKLHPDVTATIKVEV 83

Length = 86

>gnl|CDD|201708 pfam01281, Ribosomal_L9_N, Ribosomal protein L9, N-terminal domain

 Score = 63.3 bits (155), Expect = 2e-14
 Identities = 24/48 (50%), Positives = 34/48 (70%)

Query: 10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMK 57
          +++IL EDV  LGKKG +++VK G+ RN+L P G A   TP  LKE++
Sbjct: 1  MKVILLEDVEGLGKKGDIVEVKPGYARNFLLPKGLAVYATPENLKELE 48

Length = 48

>gnl|CDD|173004 PRK14538, PRK14538, putative bifunctional signaling protein/50S ribosomal protein L9; Provisional

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 5/149 (3%)

Query: 8   TQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEK 67
             ++IIL  D+   GKK +++ V  G Y N+L    KA +     L ++K ++   E EK
Sbjct: 687 KNMEIILLTDIKNKGKKHEIIKVNNG-YGNFLIQNKKALLADKENLAKIKKKKIL-EQEK 744

Query: 68  KRVKEE-AQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVD 126
           KR  E   ++L    +        + G KGK I+G +T + +V+         +D+K + 
Sbjct: 745 KRNHELLMKKLKSEIDNKKITLDIQLGPKGK-IYGKITLKQIVEEFHKIHNITIDRKKIS 803

Query: 127 LP-EIRETGEYIAQLKLHPEVTARIRLNV 154
           L  EI   G Y   + L  ++ A   LNV
Sbjct: 804 LENEIISVGIYPVDVFLTDQIKATFFLNV 832

Length = 838

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
CHL00160	153	rpl9 ribosomal protein L9; Provisional	100.0
TIGR00158	148	L9 ribosomal protein L9. Ribosomal protein L9 appe	100.0
PRK00137	147	rplI 50S ribosomal protein L9; Reviewed	100.0
COG0359	148	RplI Ribosomal protein L9 [Translation, ribosomal	100.0
PRK14538	838	putative bifunctional signaling protein/50S riboso	100.0
KOG4607	222	consensus Mitochondrial ribosomal protein L9 [Tran	99.95
PF03948	87	Ribosomal_L9_C: Ribosomal protein L9, C-terminal d	99.94
PF01281	48	Ribosomal_L9_N: Ribosomal protein L9, N-terminal d	99.93

>CHL00160 rpl9 ribosomal protein L9; Provisional

Probab=100.00  E-value=6.2e-56  Score=340.54  Aligned_cols=152  Identities=39%  Similarity=0.646  Sum_probs=145.2

Q ss_pred             CCcCCceEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031586            4 MNKKTQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFET   83 (157)
Q Consensus         4 ~~kkk~mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~   83 (157)
                      |+|+  |+|||++||++||++||+|+|+||||||||||+|+|++||++|+++++..++..++++++.+++|+++++.|++
T Consensus         2 ~~kk--mkVIL~~dV~~LGk~Gdiv~Vk~GYaRNyLiP~glA~~AT~~n~~~~e~~~~~~~~~~~~~~~~a~~la~~l~~   79 (153)
T CHL00160          2 SKKK--IQVILKENIQKLGKSGTVIKVKSGYARNYLIPNKMAKVATQGSLKQQKMYQKILDLKLKEAKEKCLKVKQLLEE   79 (153)
T ss_pred             CCce--EEEEEcccccccCCCCCEEEEcCchHhhhhcccCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            6764  99999999999999999999999999999999999999999999999999999888888999999999999999


Q ss_pred             CCeEEEEEecCCCCceeeccCHHHHHHHHHHhcCCCccCccccccCccceeeEEEEEEeCCCcEEEEEEEEeeC
Q 031586           84 VGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVFAN  157 (157)
Q Consensus        84 ~~~l~i~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~~Ik~~G~~~v~v~l~~~v~~~l~v~V~~~  157 (157)
                      ++.++|++++|++|+||||||+.||+++|++++|++||+++|+||+|+++|+|.|+|+||++|+|+++|+|++.
T Consensus        80 ~~~~~i~~k~ge~gklfGSVt~~dIa~~l~~~~g~~idk~~I~l~~Ik~~G~~~v~v~L~~~V~a~i~v~V~~~  153 (153)
T CHL00160         80 IQKFSVKKKVGENNQIFGSVTEKEISQIIKNKTNIDLEKQNIELPEIKTIGIYNIEIKLTSDVKANINLQILPE  153 (153)
T ss_pred             CceEEEEEEeCCCCeEEcccCHHHHHHHHHHhhCCccccceeehhhccccEeEEEEEEecCCcEEEEEEEEEEC
Confidence            74599999999999999999999999999988899999999999889999999999999999999999999874

>TIGR00158 L9 ribosomal protein L9

Probab=100.00  E-value=2.8e-54  Score=329.99  Aligned_cols=146  Identities=36%  Similarity=0.570  Sum_probs=140.8

Q ss_pred             eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEE
Q 031586           10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKV   89 (157)
Q Consensus        10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l~i   89 (157)
                      |+|||++||++||++||+|+|+||||||||||+|+|++||++|+++++.+++..++++++.+++|+++++.|++. .++|
T Consensus         1 MkVIL~~dV~~lGk~GdiV~Vk~GYaRNyLiP~g~A~~aT~~nl~~~e~~~~~~~~~~~~~~~~a~~l~~~l~~~-~~~i   79 (148)
T TIGR00158         1 MKVILLEDVANLGKRGDVVEVKDGYARNFLIPKGLAVPATKKNIEFFEARRKKLEEKLAANKAAAARLKEVLELG-TLTI   79 (148)
T ss_pred             CeEEEcccccccCCCCCEEEEcccchhhhhcccCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-EEEE
Confidence            899999999999999999999999999999999999999999999999999998888889999999999999997 7999


Q ss_pred             EEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc-C-ccceeeEEEEEEeCCCcEEEEEEEEeeC
Q 031586           90 KRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP-E-IRETGEYIAQLKLHPEVTARIRLNVFAN  157 (157)
Q Consensus        90 ~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~-~-Ik~~G~~~v~v~l~~~v~~~l~v~V~~~  157 (157)
                      ++++|++|+||||||++||+++|+++ |++||+++|.+| + |+++|+|+|+|+||++|+|+++|+|++.
T Consensus        80 ~~k~ge~gklfGSVt~~~I~~~l~~~-g~~idk~~I~l~~~~Ik~~G~y~v~i~L~~~V~a~i~v~V~~e  148 (148)
T TIGR00158        80 SKKVGDEGKLFGSITTKQIADALKAA-GLDLDKKKIELPDGVIRTTGEHEVTIKLHEEVFAVLKVIVVPE  148 (148)
T ss_pred             EEEeCCCCeEEEeECHHHHHHHHHHc-CCcccHhhEECCCCceeceEEEEEEEEEcCCcEEEEEEEEEEC
Confidence            99999999999999999999999887 999999999997 4 9999999999999999999999999874

Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.

>PRK00137 rplI 50S ribosomal protein L9; Reviewed

Probab=100.00  E-value=5.1e-53  Score=322.73  Aligned_cols=146  Identities=42%  Similarity=0.676  Sum_probs=141.2

Q ss_pred             eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEE
Q 031586           10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKV   89 (157)
Q Consensus        10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l~i   89 (157)
                      |+|||++||+|||++||+|+|+||||||||||+|+|+|||++|+++++.+++..++++++.+++|+++++.|++. .|+|
T Consensus         1 mkVIL~~dv~~lGk~Gdiv~Vk~GYaRNyLiP~~lA~~aT~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~-~l~i   79 (147)
T PRK00137          1 MKVILLEDVKNLGKKGDVVEVKDGYARNFLIPQGKAVRATKGNLKQLEARRAELEAKAAEELAEAEALAEKLEGL-TVTI   79 (147)
T ss_pred             CeEEEcccccccCCCCCEEEEcCcchhhhhccCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-EEEE
Confidence            899999999999999999999999999999999999999999999999999988888889999999999999987 7999


Q ss_pred             EEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc-CccceeeEEEEEEeCCCcEEEEEEEEeeC
Q 031586           90 KRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP-EIRETGEYIAQLKLHPEVTARIRLNVFAN  157 (157)
Q Consensus        90 ~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~-~Ik~~G~~~v~v~l~~~v~~~l~v~V~~~  157 (157)
                      .+++|++|+||||||++||+++|+++ |++||+++|+++ +|+++|+|+|+|+||++|+|+++|+|++.
T Consensus        80 ~~k~g~~gklfGsVt~~~I~~~l~~~-g~~idk~~I~l~~~Ik~~G~y~v~i~L~~~v~a~l~v~V~~~  147 (147)
T PRK00137         80 KAKAGEDGKLFGSVTTKDIAEALKKQ-GIEIDKRKIELPGPIKTLGEYEVPVKLHPEVTATIKVNVVAE  147 (147)
T ss_pred             EEEcCCCCeEEeeeCHHHHHHHHHHc-CCccCHHHeECCCcccccEEEEEEEEECCCcEEEEEEEEEEC
Confidence            99999999999999999999999998 999999999998 69999999999999999999999999874

>COG0359 RplI Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.3e-51  Score=312.61  Aligned_cols=145  Identities=37%  Similarity=0.577  Sum_probs=140.8

Q ss_pred             eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEE
Q 031586           10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKV   89 (157)
Q Consensus        10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l~i   89 (157)
                      |+|||++||++||+.||+|+|++|||||||||+|+|+.||++|++.++.++++.+++.++.+++|+++++.|++. .++|
T Consensus         1 MkVILl~dV~~lGk~Gdiv~VkdGYarNfLiPkglAv~At~~n~~~~e~~r~~~e~~~~~~~~~a~~lk~~Le~~-~~~i   79 (148)
T COG0359           1 MKVILLEDVKGLGKKGDIVEVKDGYARNFLIPKGLAVPATKGNLKLLEARRAKLEKKAAEELAEAEALKEKLEGK-TVEI   79 (148)
T ss_pred             CeEEEecchhhcCCCCCEEEecchhhhhhhccccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-eEEE
Confidence            899999999999999999999999999999999999999999999999988888888888999999999999995 8999


Q ss_pred             EEecCCCCceeeccCHHHHHHHHHHhcCCCccCccccccC-ccceeeEEEEEEeCCCcEEEEEEEEee
Q 031586           90 KRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE-IRETGEYIAQLKLHPEVTARIRLNVFA  156 (157)
Q Consensus        90 ~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~~-Ik~~G~~~v~v~l~~~v~~~l~v~V~~  156 (157)
                      .+++|++|+||||||++||+++|.++ |++||+++|.+|+ |+++|+|+|+|+||++|+++++|.|.+
T Consensus        80 ~~kag~~GklfGSVt~~dIa~~l~~~-g~~idk~~i~l~~~ik~~G~~~V~vkLh~eV~a~v~v~V~~  146 (148)
T COG0359          80 AVKAGEDGKLFGSVTSKDIAEALKAA-GFKLDKRKIRLPNGIKTLGEHEVEVKLHEEVTATVKVNVVA  146 (148)
T ss_pred             EEEcCCCCceeccccHHHHHHHHHHc-CCCcchheeEcCchhhhcceeEEEEEecCceEEEEEEEEEe
Confidence            99999999999999999999999999 9999999999996 999999999999999999999999986

>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional

Probab=100.00  E-value=4.1e-43  Score=325.88  Aligned_cols=146  Identities=23%  Similarity=0.345  Sum_probs=141.1

Q ss_pred             ceEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEE
Q 031586            9 QIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFK   88 (157)
Q Consensus         9 ~mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l~   88 (157)
                      .|+|||++||++||++||+|+|+|||| |||||+|+|++||++|+++++.+++..++++++.+++|++++++|+++ .++
T Consensus       688 ~MkVIL~~dv~~lGk~Gdvv~Vk~GYa-NfLiP~~~A~~aT~~nlk~~e~~~~~~~~~~~~~~~~a~~l~~~l~~~-~~~  765 (838)
T PRK14538        688 NMEIILLTDIKNKGKKHEIIKVNNGYG-NFLIQNKKALLADKENLAKIKKKKILEQEKKRNHELLMKKLKSEIDNK-KIT  765 (838)
T ss_pred             hhhHHHHHHHHhcCCCCCEEEECCCch-hhhccCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-EEE
Confidence            599999999999999999999999999 999999999999999999999999998888889999999999999997 799


Q ss_pred             EEEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc-CccceeeEEEEEEeCCCcEEEEEEEEee
Q 031586           89 VKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP-EIRETGEYIAQLKLHPEVTARIRLNVFA  156 (157)
Q Consensus        89 i~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~-~Ik~~G~~~v~v~l~~~v~~~l~v~V~~  156 (157)
                      |++++|++|+||||||++||+++|++++|++||++.|.|+ |||++|+|.|+|+||++|+|+++|+|+.
T Consensus       766 i~~k~ge~gklfGSVt~~~I~~~l~~~~g~~idk~~I~l~~~Ik~~G~~~v~i~L~~~V~a~i~v~V~~  834 (838)
T PRK14538        766 LDIQLGPKGKIYGKITLKQIVEEFHKIHNITIDRKKISLENEIISVGIYPVDVFLTDQIKATFFLNVIE  834 (838)
T ss_pred             EEEEeCCCCeeeeccCHHHHHHHHHHhhCCccccceeeCCCcccccEEEEEEEEEcCCeEEEEEEEEEE
Confidence            9999999999999999999999999989999999999997 5999999999999999999999999974

>KOG4607 consensus Mitochondrial ribosomal protein L9 [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=7.3e-28  Score=191.50  Aligned_cols=149  Identities=40%  Similarity=0.611  Sum_probs=125.8

Q ss_pred             cCCceEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031586            6 KKTQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVG   85 (157)
Q Consensus         6 kkk~mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~   85 (157)
                      .++.++|||++||+|||++||+|+|++||+||+|+|+|+|+|+||.+.+.+....++......+..++++.++ .|.+. 
T Consensus        45 ~k~~levIL~~~Ve~lG~qGdvVsVk~g~~RN~Llp~glAvy~tp~~~~~~k~~~~e~~~~k~~vk~e~k~V~-~lqt~-  122 (222)
T KOG4607|consen   45 PKPNLEVILKTDVEKLGKQGDVVSVKRGYFRNFLLPKGLAVYNTPLNLKKYKLREQEEEAEKIRVKEEAKVVA-VLQTV-  122 (222)
T ss_pred             CCcceeeeeehhhhhhcccCcEEEeecchhhhhcccccccccCChhhHHHHHHHHHHHHhhhhccHHHHHHHH-HHHhh-
Confidence            4568999999999999999999999999999999999999999999988877655555544445555565555 88876 


Q ss_pred             eEEEEEecCCCCce-eeccCHHHHHHHHHHhcCCCccCccccccCccceeeEEEEEEeCCCcEEEEEEEEee
Q 031586           86 AFKVKRKGGKGKQI-FGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVFA  156 (157)
Q Consensus        86 ~l~i~~k~~~~gkl-fGsVt~~dI~~~l~~~~gi~i~k~~I~l~~Ik~~G~~~v~v~l~~~v~~~l~v~V~~  156 (157)
                      .+.+.++-+..|.| +++|++++.-..+.+++-+.+|++.|..|.++.-|+|.+.|+++++.++.+...|..
T Consensus       123 v~~~~~~k~~kw~l~~~~V~~~l~~gv~~~~~t~~l~k~~vs~P~~k~e~~~~~~V~in~~~~vr~~~~v~~  194 (222)
T KOG4607|consen  123 VLFKVMNKGGKWKLNPNLVKASLRKGVIVAELTIKLDKELVSGPITKEEGEYICEVKINPDVTVRVKIRVTH  194 (222)
T ss_pred             hhhheeccCCceeecHHHHHHHHhcceEeccccccCcccccCCCcccccceEEEEEEECCcceEEeeeeeec
Confidence            57777777777776 788888888877777778899999999998999999999999999999999998864

>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.94  E-value=1e-26  Score=163.42  Aligned_cols=86  Identities=47%  Similarity=0.772  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHhccCCeEEEEEecCCCCceeeccCHHHHHHHHHHhcCCCccCccccccC-ccceeeEEEEEEeCCCcEEE
Q 031586           71 KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE-IRETGEYIAQLKLHPEVTAR  149 (157)
Q Consensus        71 ~~~a~~~~~~L~~~~~l~i~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~~-Ik~~G~~~v~v~l~~~v~~~  149 (157)
                      +++|++++++|++. .|+|.+++|++|+||||||++||+++|++++|++||+++|.++. ||++|+|.|+|+||++|+|+
T Consensus         1 k~~A~~l~~~l~~~-~l~i~~k~g~~gklfGSVt~~dIa~~l~~~~g~~Idk~~I~l~~~IK~~G~~~v~v~L~~~V~a~   79 (87)
T PF03948_consen    1 KAEAQALAEKLEGI-TLTIKRKAGENGKLFGSVTSKDIAKALKEQTGIEIDKKKIELPEPIKSLGEYEVKVKLHPEVSAK   79 (87)
T ss_dssp             HHHHHHHHHHHCSS-EEEEEECBSSCSSBSSEBSHHHHHHHHHHCCSSSSSSSSBCSSSTBESSEEEEEEEEEETTEEEE
T ss_pred             CHHHHHHHHHhcCC-EEEEEEEecCCcceecCcCHHHHHHHHHHhhCCeEeccEEECCCchhccEEEEEEEEeCCCeEEE
Confidence            36799999999998 79999999999999999999999999999999999999999995 99999999999999999999


Q ss_pred             EEEEEeeC
Q 031586          150 IRLNVFAN  157 (157)
Q Consensus       150 l~v~V~~~  157 (157)
                      |+|+|.++
T Consensus        80 i~v~V~~E   87 (87)
T PF03948_consen   80 IKVNVVAE   87 (87)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEeC
Confidence            99999863

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....

>PF01281 Ribosomal_L9_N: Ribosomal protein L9, N-terminal domain; InterPro: IPR020070 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.93  E-value=7.8e-27  Score=147.09  Aligned_cols=48  Identities=46%  Similarity=0.792  Sum_probs=44.9

Q ss_pred             eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHH
Q 031586           10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMK   57 (157)
Q Consensus        10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~   57 (157)
                      |+|||++||+|||++||+|+|++|||||||+|+|+|+|||++|+++++
T Consensus         1 m~ViL~~dv~~lG~~Gdiv~V~~Gy~RN~L~p~~~A~~at~~~~~~~e   48 (48)
T PF01281_consen    1 MKVILLKDVPGLGKKGDIVEVKPGYARNFLIPQGLAVYATPENLKQLE   48 (48)
T ss_dssp             -EEEESSCCTTSBSTTEEEE-SHHHHHHTTTTTTSEEECSHHHHHHHH
T ss_pred             CEEEEcccccccCCCCCEEEEccceeeehccCCCceeeCCHHHHHhcC
Confidence            799999999999999999999999999999999999999999999874

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	157
3bbo_J	197	Homology Model For The Spinach Chloroplast 50s Subu		5e-48
1nkw_F	146	Crystal Structure Of The Large Ribosomal Subunit Fr		2e-13
2v47_I	148	Structure Of The Ribosome Recycling Factor Bound To		3e-13
2hgj_K	148	Crystal Structure Of The 70s Thermus Thermophilus R		3e-13
3tve_K	146	Crystal Structure Analysis Of Ribosomal Decoding. T		3e-13
1vsa_G	148	Crystal Structure Of A 70s Ribosome-Trna Complex Re		4e-13
3uxq_I	148	The Structure Of Thermorubin In Complex With The 70		1e-12
3fin_I	146	T. Thermophilus 70s Ribosome In Complex With Mrna,		1e-12
3pyo_H	145	Crystal Structure Of A Complex Containing Domain 3		1e-12
1p85_F	149	Real Space Refined Coordinates Of The 50s Subunit F		6e-11
487d_K	149	Seven Ribosomal Proteins Fitted To A Cryo-Electron		5e-08
3iy9_H	60	Leishmania Tarentolae Mitochondrial Large Ribosomal		3e-04

>pdb|3BBO|J Chain J, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 197

Iteration: 1
 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 121/147 (82%)
Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXXX 70
           ++ILKEDV +LGK+GQLLDVKAGF+RN+L P GKAQ++TPLLL                 
Sbjct: 51  KVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRV 110
Query: 71  XXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEI 130
               QQLA++F+TVGAFKVKRKGGKGK IFGSVTAQD+VDIIK+QLQ+D+DK++V LPEI
Sbjct: 111 KEEAQQLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPEI 170
Query: 131 RETGEYIAQLKLHPEVTARIRLNVFAN 157
           RETGEYIA+LKLHP+VTAR+++NVFAN
Sbjct: 171 RETGEYIAELKLHPDVTARVKINVFAN 197

>pdb|1NKW|F Chain F, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 146

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Query: 10  IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
           +Q+IL E  + LGK G+++ VK G+ RN+L P G A   T   +                
Sbjct: 1   MQVILLEP-SRLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQ 59
Query: 70  XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                + LA     V A ++  + G+GK I+G+VT QDV + +  QL  DVD++ +D+P+
Sbjct: 60  EKAVAEDLASRLNGV-AVELSVRAGEGK-IYGAVTHQDVANSLD-QLGFDVDRRKIDMPK 116
Query: 130 -IRETGEYIAQLKLHPEVTARIRLNVFA 156
            ++E GEY    + HPEVT  ++L V A
Sbjct: 117 TVKEVGEYDIAYRAHPEVTIPMKLVVHA 144

>pdb|2V47|I Chain I, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 2 Of 4). This File Contains The 50s Subunit For Molecule 1. Length = 148

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 10  IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
           +++IL E +  LG  GQ++DVK G+ RNYL P G A + T   L                
Sbjct: 1   MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAE 60
Query: 70  XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                ++L  I E +    +  + G+ K I+GSVTA+D+ + +  Q    +D K + L +
Sbjct: 61  RKAEAERLKEILENL-TLTIPVRAGETK-IYGSVTAKDIAEALSRQHGVTIDPKRLALEK 118
Query: 130 -IRETGEYIAQLKLHPEVTARIRLNVFA 156
            I+E GEY+   K HPEV  +++++V A
Sbjct: 119 PIKELGEYVLTYKPHPEVPIQLKVSVVA 146

>pdb|2HGJ|K Chain K, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 148

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 10  IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
           +++IL E +  LG  GQ++DVK G+ RNYL P G A + T   L                
Sbjct: 1   MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAE 60
Query: 70  XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                ++L  I E +    +  + G+ K I+GSVTA+D+ + +  Q    +D K + L +
Sbjct: 61  RKAEAERLKKILENL-TLTIPVRAGETK-IYGSVTAKDIAEALSRQHGVTIDPKRLALEK 118
Query: 130 -IRETGEYIAQLKLHPEVTARIRLNVFA 156
            I+E GEY+   K HPEV  +++++V A
Sbjct: 119 PIKELGEYVLTYKPHPEVPIQLKVSVVA 146

>pdb|3TVE|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 146

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 10  IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
           +++IL E +  LG  GQ++DVK G+ RNYL P G A + T   L                
Sbjct: 1   MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAE 60
Query: 70  XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                ++L  I E +    +  + G+ K I+GSVTA+D+ + +  Q    +D K + L +
Sbjct: 61  RKAEAERLKEILENL-TLTIPVRAGETK-IYGSVTAKDIAEALSRQHGVTIDPKRLALEK 118
Query: 130 -IRETGEYIAQLKLHPEVTARIRLNVFA 156
            I+E GEY+   K HPEV  +++++V A
Sbjct: 119 PIKELGEYVLTYKPHPEVPIQLKVSVVA 146

>pdb|1VSA|G Chain G, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 148

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 10  IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
           +++IL E +  LG  GQ++DVK G+ RNYL P G A + T   L                
Sbjct: 1   MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAE 60
Query: 70  XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                ++L  I E +    +  + G+ K I+GSVTA+D+ + +  Q    +D K + L +
Sbjct: 61  RKAEAERLKEILENL-TLTIPVRAGETK-IYGSVTAKDIAEALSRQHGITIDPKRLALEK 118
Query: 130 -IRETGEYIAQLKLHPEVTARIRLNVFA 156
            I+E GEY+   K HPEV  +++++V A
Sbjct: 119 PIKELGEYVLTYKPHPEVPIQLKVSVVA 146

>pdb|3UXQ|I Chain I, The Structure Of Thermorubin In Complex With The 70s Ribosome From Thermus Thermophilus. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. Length = 148

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 10  IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
           +++IL E +  LG  GQ++DVK G+ RNYL P G A + T   L                
Sbjct: 1   MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAE 60
Query: 70  XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                ++L  I E +    +  + G+ K I+GSVTA+D+ + +  Q    ++ K + L +
Sbjct: 61  RKAEAERLKEILENL-TLTIPVRAGETK-IYGSVTAKDIAEALSRQHGVTIEPKRLALEK 118
Query: 130 -IRETGEYIAQLKLHPEVTARIRLNVFA 156
            I+E GEY+   K HPEV  +++++V A
Sbjct: 119 PIKELGEYVLTYKPHPEVPIQLKVSVVA 146

>pdb|3FIN|I Chain I, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 146

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 10  IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
           +++IL E +  LG  GQ++DVK G+ RNYL P G A + T   L                
Sbjct: 1   MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAE 60
Query: 70  XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                ++L  I E +    +  + G+ K I+GSVTA+D+ + +  Q    +D K + L +
Sbjct: 61  RKAEAERLKEILENL-TLTIPVRAGETK-IYGSVTAKDIAEALSRQHGVTIDPKRLALEK 118
Query: 130 -IRETGEYIAQLKLHPEVTARIRLNVF 155
            I+E GEY+   K HPEV  +++++V 
Sbjct: 119 PIKELGEYVLTYKPHPEVPIQLKVSVV 145

>pdb|3PYO|H Chain H, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 145

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 10  IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
           +++IL E +  LG  GQ++DVK G+ RNYL P G A + T   L                
Sbjct: 1   MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAE 60
Query: 70  XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                ++L  I E +    +  + G+ K I+GSVTA+D+ + +  Q    +D K + L +
Sbjct: 61  RKAEAERLKEILENL-TLTIPVRAGETK-IYGSVTAKDIAEALSRQHGITIDPKRLALEK 118
Query: 130 -IRETGEYIAQLKLHPEVTARIRLNVF 155
            I+E GEY+   K HPEV  +++++V 
Sbjct: 119 PIKELGEYVLTYKPHPEVPIQLKVSVV 145

>pdb|1P85|F Chain F, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 149

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 3/149 (2%)
Query: 10  IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
           +Q+IL + VA LG  G  ++VKAG+ RN+L P GKA   T   +                
Sbjct: 1   MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE 60
Query: 70  XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                   A     +    +  K G   ++FGS+  +D+ D + A    +V K  V LP 
Sbjct: 61  VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAA-GVEVAKSEVRLPN 119
Query: 130 --IRETGEYIAQLKLHPEVTARIRLNVFA 156
             +R TGE+    ++H EV A++ +NV A
Sbjct: 120 GVLRTTGEHEVSFQVHSEVFAKVIVNVVA 148

>pdb|487D|K Chain K, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 149

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 2/146 (1%)
Query: 10  IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLXXXXXXXXXXXXXXXX 69
           +++I  +DV   GKKG++ +V  G+  N+L   G A   TP  L                
Sbjct: 1   MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQKEQRQAAE 60
Query: 70  XXXXXQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
                ++L    E +    +  K G+G ++FGS+T++ + + ++AQ    +DK+ ++L +
Sbjct: 61  ELANAKKLKEQLEKL-TVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELAD 119
Query: 130 -IRETGEYIAQLKLHPEVTARIRLNV 154
            IR  G     +KLHPEVTA ++++V
Sbjct: 120 AIRALGYTNVPVKLHPEVTATLKVHV 145

>pdb|3IY9|H Chain H, Leishmania Tarentolae Mitochondrial Large Ribosomal Subunit Model Length = 60

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVT 49
          +Q+IL + VA LG  G  ++VKAG+ RN+L P GKA   T
Sbjct: 1  MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPAT 40

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
3bbo_J	197	Ribosomal protein L9; large ribosomal subunit, spi	1e-52
3r8s_H	149	50S ribosomal protein L9; protein biosynthesis, RN	1e-38
1div_A	149	Ribosomal protein L9; rRNA-binding; 2.60A {Geobaci	1e-38
3v2d_I	148	50S ribosomal protein L9; ribosome associated inhi	2e-38
1nkw_F	146	50S ribosomal protein L9; ribosome, large subunit,	6e-34
2hba_A	52	BL17, 50S ribosomal protein L9; NTL9, K12M, RNA bi	8e-10

>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 197

 Score =  164 bits (417), Expect = 1e-52
 Identities = 117/147 (79%), Positives = 142/147 (96%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           ++ILKEDV +LGK+GQLLDVKAGF+RN+L P GKAQ++TPLLLKE+KME+ERIEAEK+RV
Sbjct: 51  KVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRV 110

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEI 130
           KEEAQQLA++F+TVGAFKVKRKGGKGK IFGSVTAQD+VDIIK+QLQ+D+DK++V LPEI
Sbjct: 111 KEEAQQLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPEI 170

Query: 131 RETGEYIAQLKLHPEVTARIRLNVFAN 157
           RETGEYIA+LKLHP+VTAR+++NVFAN
Sbjct: 171 RETGEYIAELKLHPDVTARVKINVFAN 197

>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ... Length = 149

 Score =  127 bits (322), Expect = 1e-38
 Identities = 49/148 (33%), Positives = 76/148 (51%), Gaps = 3/148 (2%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           Q+IL + VA LG  G  ++VKAG+ RN+L P GKA   T   ++  +     +EA+   V
Sbjct: 2   QVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEV 61

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE- 129
              A   A     +    +  K G   ++FGS+  +D+ D + A    +V K  V LP  
Sbjct: 62  LAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAA-GVEVAKSEVRLPNG 120

Query: 130 -IRETGEYIAQLKLHPEVTARIRLNVFA 156
            +R TGE+    ++H EV A++ +NV A
Sbjct: 121 VLRTTGEHEVSFQVHSEVFAKVIVNVVA 148

>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K Length = 149

 Score =  127 bits (321), Expect = 1e-38
 Identities = 44/147 (29%), Positives = 84/147 (57%), Gaps = 2/147 (1%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           ++I  +DV   GKKG++ +V  G+  N+L   G A   TP  LK ++ ++++ + +    
Sbjct: 2   KVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQKEQRQAAEE 61

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE- 129
              A++L    E +    +  K G+G ++FGS+T++ + + ++AQ    +DK+ ++L + 
Sbjct: 62  LANAKKLKEQLEKL-TVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADA 120

Query: 130 IRETGEYIAQLKLHPEVTARIRLNVFA 156
           IR  G     +KLHPEVTA ++++V  
Sbjct: 121 IRALGYTNVPVKLHPEVTATLKVHVTE 147

>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ... Length = 148

 Score =  126 bits (320), Expect = 2e-38
 Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           ++IL E +  LG  GQ++DVK G+ RNYL P G A + T   LK ++             
Sbjct: 2   KVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAER 61

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE- 129
           K EA++L  I E +    +  + G+ K I+GSVTA+D+ + +  Q    +D K + L + 
Sbjct: 62  KAEAERLKEILENL-TLTIPVRAGETK-IYGSVTAKDIAEALSRQHGVTIDPKRLALEKP 119

Query: 130 IRETGEYIAQLKLHPEVTARIRLNV 154
           I+E GEY+   K HPEV  +++++V
Sbjct: 120 IKELGEYVLTYKPHPEVPIQLKVSV 144

>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I Length = 146

 Score =  115 bits (290), Expect = 6e-34
 Identities = 54/147 (36%), Positives = 85/147 (57%), Gaps = 5/147 (3%)

Query: 11  QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRV 70
           Q+IL E    LGK G+++ VK G+ RN+L P G A   T   +K ++ +   IE  + + 
Sbjct: 2   QVILLEPS-RLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQE 60

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE- 129
           K  A+ LA     V A ++  + G+GK I+G+VT QDV + +      DVD++ +D+P+ 
Sbjct: 61  KAVAEDLASRLNGV-AVELSVRAGEGK-IYGAVTHQDVANSLDQL-GFDVDRRKIDMPKT 117

Query: 130 IRETGEYIAQLKLHPEVTARIRLNVFA 156
           ++E GEY    + HPEVT  ++L V A
Sbjct: 118 VKEVGEYDIAYRAHPEVTIPMKLVVHA 144

>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A Length = 52

 Score = 50.7 bits (122), Expect = 8e-10
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 11 QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEE 61
          ++I  +DV  +GKKG++ +V  G+  N+L   G A   TP  LK ++ +++
Sbjct: 2  KVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQ 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
1div_A	149	Ribosomal protein L9; rRNA-binding; 2.60A {Geobaci	100.0
3v2d_I	148	50S ribosomal protein L9; ribosome associated inhi	100.0
1nkw_F	146	50S ribosomal protein L9; ribosome, large subunit,	100.0
3r8s_H	149	50S ribosomal protein L9; protein biosynthesis, RN	100.0
3bbo_J	197	Ribosomal protein L9; large ribosomal subunit, spi	100.0
2hba_A	52	BL17, 50S ribosomal protein L9; NTL9, K12M, RNA bi	99.95

>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K

Probab=100.00  E-value=3.1e-56  Score=339.92  Aligned_cols=147  Identities=30%  Similarity=0.520  Sum_probs=142.7

Q ss_pred             eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEE
Q 031586           10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKV   89 (157)
Q Consensus        10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l~i   89 (157)
                      |+|||++||+|||++||+|+|+||||||||||+|+|++||++|+++++.++++.+++.++.+++|++++++|++. .|+|
T Consensus         1 MkVILl~dV~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L~~~-~v~i   79 (149)
T 1div_A            1 MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQKEQRQAAEELANAKKLKEQLEKL-TVTI   79 (149)
T ss_dssp             CEEEECSBSSSBGGGTEEEECCTTHHHHTTTTTTSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CEEE
T ss_pred             CEEEEcccccccCCCCCEEEEcCCceeeeeccCCceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-eEEE
Confidence            899999999999999999999999999999999999999999999999999999998999999999999999998 7999


Q ss_pred             EEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc-CccceeeEEEEEEeCCCcEEEEEEEEeeC
Q 031586           90 KRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP-EIRETGEYIAQLKLHPEVTARIRLNVFAN  157 (157)
Q Consensus        90 ~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~-~Ik~~G~~~v~v~l~~~v~~~l~v~V~~~  157 (157)
                      .+++|++|+||||||++||+++|.+++|++||+++|.+| ||+++|+|+|+|+||++|+|+++|+|++.
T Consensus        80 ~~k~g~~gklfGSVt~~dIa~al~~~~g~~idk~~I~l~~~Ik~~G~~~v~vkLh~~V~a~i~v~V~~~  148 (149)
T 1div_A           80 PAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHPEVTATLKVHVTEQ  148 (149)
T ss_dssp             EECBCGGGEEEEEECHHHHHHHHHHHHCCCCCGGGBCCCSCEEESEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEeCCCCcEEeecCHHHHHHHHHHhhCCeechheEECCCCccccEEEEEEEEECCCCEEEEEEEEEec
Confidence            999999999999999999999999999999999999998 59999999999999999999999999863

>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...

Probab=100.00  E-value=2.2e-55  Score=334.92  Aligned_cols=145  Identities=35%  Similarity=0.572  Sum_probs=140.9

Q ss_pred             eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEE
Q 031586           10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKV   89 (157)
Q Consensus        10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l~i   89 (157)
                      |+|||++||+|||++||+|+|+||||||||||+|+|++||++|+++++.++++.++++++.+++|++++++|++. .|+|
T Consensus         1 MkVILl~dV~~LG~~GdvV~Vk~GYaRNfLiP~g~A~~AT~~n~k~~e~~~~~~~~~~~~~~~~A~~~~~~L~~~-~v~i   79 (148)
T 3v2d_I            1 MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAERKAEAERLKEILENL-TLTI   79 (148)
T ss_dssp             CEEEESSCBTTTBSTTCEEECCHHHHHHTTGGGTSEEECCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHSSSC-CEEE
T ss_pred             CeEEEccccccCCCCccEEEEcCCceehhhcccCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-EEEE
Confidence            899999999999999999999999999999999999999999999999999999888899999999999999998 7999


Q ss_pred             EEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc-CccceeeEEEEEEeCCCcEEEEEEEEee
Q 031586           90 KRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP-EIRETGEYIAQLKLHPEVTARIRLNVFA  156 (157)
Q Consensus        90 ~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~-~Ik~~G~~~v~v~l~~~v~~~l~v~V~~  156 (157)
                      .+++|++ +||||||++||+++|.+++|++||+++|.|| ||+++|+|+|+|+||++|+|+++|+|++
T Consensus        80 ~~kag~~-kLfGSVt~~dIa~al~~~~g~~idk~~I~l~~pIk~~G~~~v~v~Lh~~V~a~i~v~V~~  146 (148)
T 3v2d_I           80 PVRAGET-KIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHPEVPIQLKVSVVA  146 (148)
T ss_dssp             ECCBSSS-SBSSCBCHHHHHHHHTTTTCCCCCTTSSCCSSCBCSCEEEEEECCSBTTBCCEEEEEEEC
T ss_pred             EEEcCCC-ccccccCHHHHHHHHHHhcCCCcchheEEcCchhhceEEEEEEEEECCCcEEEEEEEEEe
Confidence            9999999 9999999999999999989999999999998 5999999999999999999999999986

>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I

Probab=100.00  E-value=1.8e-54  Score=329.24  Aligned_cols=144  Identities=36%  Similarity=0.575  Sum_probs=139.7

Q ss_pred             eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEE
Q 031586           10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKV   89 (157)
Q Consensus        10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l~i   89 (157)
                      |+|||++| +|||++||+|+|+||||||||||+|+|++||++|+++++.++++.++++++.+++|++++++|++. .|+|
T Consensus         1 MkVIL~~d-~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L~~~-~v~i   78 (146)
T 1nkw_F            1 MQVILLEP-SRLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGV-AVEL   78 (146)
T ss_pred             CeEEEeec-CCCCCCCCEEEEcCcceehhcccCCceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-EEEE
Confidence            89999999 999999999999999999999999999999999999999999999988899999999999999998 7999


Q ss_pred             EEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc-CccceeeEEEEEEeCCCcEEEEEEEEeeC
Q 031586           90 KRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP-EIRETGEYIAQLKLHPEVTARIRLNVFAN  157 (157)
Q Consensus        90 ~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~-~Ik~~G~~~v~v~l~~~v~~~l~v~V~~~  157 (157)
                      .+++| +|+||||||++||+++|.++ |++||+++|.|| ||+++|+|+|+|+||++|+|+++|+|++.
T Consensus        79 ~~k~g-~gklfGSVt~~dIa~al~~~-g~~idk~~I~l~~~Ik~~G~~~v~vkLh~~V~a~i~v~V~~~  145 (146)
T 1nkw_F           79 SVRAG-EGKIYGAVTHQDVANSLDQL-GFDVDRRKIDMPKTVKEVGEYDIAYRAHPEVTIPMKLVVHAA  145 (146)
T ss_pred             EEEcC-CCceeeccCHHHHHHHHHHc-CCeechheEECCCcccccEEEEEEEEECCCCEEEEEEEEEec
Confidence            99999 99999999999999999999 999999999998 59999999999999999999999999863

>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...

Probab=100.00  E-value=2e-55  Score=335.51  Aligned_cols=147  Identities=33%  Similarity=0.506  Sum_probs=141.1

Q ss_pred             eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEE
Q 031586           10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKV   89 (157)
Q Consensus        10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l~i   89 (157)
                      |+|||++||+|||++||+|+|+||||||||||+|+|++||++|+++++.++++.++++++.+++|++++++|++...|+|
T Consensus         1 MkVIL~~dV~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~k~~e~~~~~~~~~~~~~~~~A~~~~~~L~~~~~v~i   80 (149)
T 3r8s_H            1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTI   80 (149)
T ss_dssp             CCCEESSCCTTTCCSSCBCCCCHHHHTTTTSSSSSEECCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEecccccCCCCCCEEEEcCcceehhhccCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence            89999999999999999999999999999999999999999999999999999888888999999999999999536999


Q ss_pred             EEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc--CccceeeEEEEEEeCCCcEEEEEEEEeeC
Q 031586           90 KRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP--EIRETGEYIAQLKLHPEVTARIRLNVFAN  157 (157)
Q Consensus        90 ~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~--~Ik~~G~~~v~v~l~~~v~~~l~v~V~~~  157 (157)
                      .+++|++|+||||||++||+++|+++ |++||+++|.||  ||+++|+|+|+|+||++|+++++|+|++.
T Consensus        81 ~~k~g~~gklfGSVt~~dIa~al~~~-g~~idk~~I~l~~~pIk~~G~~~v~v~Lh~~V~a~i~v~V~~e  149 (149)
T 3r8s_H           81 ASKAGDEGKLFGSIGTRDIADAVTAA-GVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE  149 (149)
T ss_dssp             EECBCTTSEEEEEECHHHHHHHHHTT-SCCCCTTSEECSSCCEEESEEEEEEECSSSSCCCCEEEEEEEC
T ss_pred             EEEcCCCCceEcccCHHHHHHHHHHc-CCceehheEEcCCccccceEEEEEEEEECCCCEEEEEEEEEEC
Confidence            99999999999999999999999988 999999999997  59999999999999999999999999874

>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=1.8e-55  Score=348.59  Aligned_cols=150  Identities=78%  Similarity=1.194  Sum_probs=142.2

Q ss_pred             CceEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeE
Q 031586            8 TQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAF   87 (157)
Q Consensus         8 k~mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l   87 (157)
                      ++|+|||++||+|||++||+|+|+||||||||||+|+|++||++|+++++.++++.++++++.+++|++++++|++...|
T Consensus        48 k~MkVILledV~~LGk~GdvV~Vk~GYARNfLiP~glAv~AT~~nlk~~e~~~~~~e~~~~~~~~~A~~la~~L~~~~~v  127 (197)
T 3bbo_J           48 KLRKVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLAMVFQTVGAF  127 (197)
T ss_dssp             --CCCCCCSCSSSSCSSCCCSCCCSSSCCCCCTTTTCCCCCCHHHHHHHHTTTHHHHGGGTTTTHHHHTHHHHSSSCCCC
T ss_pred             CceEEEEcccccccCCCCCEEEEcCcceeehcccCCceecCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence            47999999999999999999999999999999999999999999999999999988888888999999999999996239


Q ss_pred             EEEEecCCCCceeeccCHHHHHHHHHHhcCCCccCccccccCccceeeEEEEEEeCCCcEEEEEEEEeeC
Q 031586           88 KVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVFAN  157 (157)
Q Consensus        88 ~i~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~~Ik~~G~~~v~v~l~~~v~~~l~v~V~~~  157 (157)
                      +|.+++|++|+||||||++||+++|.+++|++||++.|.|++||++|+|+|+|+||+||+++|+|+|+++
T Consensus       128 ~i~~kaGe~GkLFGSVT~~dIa~al~~~~Gi~Idk~~I~L~~IK~lG~y~V~VkLh~eV~a~i~V~V~~~  197 (197)
T 3bbo_J          128 KVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPEIRETGEYIAELKLHPDVTARVKINVFAN  197 (197)
T ss_dssp             BCCCCBCTTSSBSSCCSSHHHHGGGTSSSSCCCCSTTCCSCCCSSSSCEEECCCCBTTBCCCEEEBCCCC
T ss_pred             EEEEEeCCCCcEecccCHHHHHHHHHHhhCCeeeeeEEEeccccceEEEEEEEEECCCcEEEEEEEEEeC
Confidence            9999999999999999999999999999999999999999889999999999999999999999999875

>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A

Probab=99.95  E-value=2.5e-29  Score=159.86  Aligned_cols=51  Identities=33%  Similarity=0.599  Sum_probs=49.0

Q ss_pred             eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHH
Q 031586           10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEE   60 (157)
Q Consensus        10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~   60 (157)
                      |+|||++||++||++||+|+|++|||||||||+|+|++||++|+++++.++
T Consensus         1 MkVIL~~dV~~lG~~Gdvv~V~~GYaRN~LiP~g~A~~AT~~n~~~~~~~~   51 (52)
T 2hba_A            1 MKVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQK   51 (52)
T ss_dssp             CEEEESSCBTTTBCTTCEEECCHHHHHHTTTTTTSEEECCHHHHHHHHHHH
T ss_pred             CEEEEcccccccCcCCCEEEEcCCceehhhccCCceeeCCHHHHHHHHHhh
Confidence            799999999999999999999999999999999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d2gycf1	91	d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain	4e-15
d2j01i1	91	d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain	6e-14
d1diva1	94	d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain	3e-12
d2gycf2	58	d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {	1e-11
d2j01i2	55	d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {	9e-11
d2hbaa1	52	d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {	1e-09

>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain {Escherichia coli [TaxId: 562]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L9 C-domain
superfamily: Ribosomal protein L9 C-domain
family: Ribosomal protein L9 C-domain
domain: Ribosomal protein L9 C-domain
species: Escherichia coli [TaxId: 562]

 Score = 64.4 bits (157), Expect = 4e-15
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 70  VKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE 129
           V   A   A     +    +  K G   ++FGS+  +D+ D + A    +V K  V LP 
Sbjct: 3   VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAA-GVEVAKSEVRLPN 61

Query: 130 --IRETGEYIAQLKLHPEVTARIRLNVFA 156
             +R TGE+    ++H EV A++ +NV A
Sbjct: 62  GVLRTTGEHEVSFQVHSEVFAKVIVNVVA 90

>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus thermophilus [TaxId: 274]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L9 C-domain
superfamily: Ribosomal protein L9 C-domain
family: Ribosomal protein L9 C-domain
domain: Ribosomal protein L9 C-domain
species: Thermus thermophilus [TaxId: 274]

 Score = 61.4 bits (149), Expect = 6e-14
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP-E 129
           K EA++L  I E +    +  + G+ K I+GSVTA+D+ + +  Q    +D K + L   
Sbjct: 7   KAEAERLKEILENL-TLTIPVRAGETK-IYGSVTAKDIAEALSRQHGVTIDPKRLALEKP 64

Query: 130 IRETGEYIAQLKLHPEVTARIRLNVFA 156
           I+E GEY+   K HPEV  +++++V A
Sbjct: 65  IKELGEYVLTYKPHPEVPIQLKVSVVA 91

>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L9 C-domain
superfamily: Ribosomal protein L9 C-domain
family: Ribosomal protein L9 C-domain
domain: Ribosomal protein L9 C-domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 57.1 bits (138), Expect = 3e-12
 Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 71  KEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPE- 129
              A++L    E +    +  K G+G ++FGS+T++ + + ++AQ    +DK+ ++L + 
Sbjct: 7   LANAKKLKEQLEKL-TVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADA 65

Query: 130 IRETGEYIAQLKLHPEVTARIRLNV 154
           IR  G     +KLHPEVTA ++++V
Sbjct: 66  IRALGYTNVPVKLHPEVTATLKVHV 90

>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]} Length = 58

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: Ribosomal protein L9 N-domain
domain: Ribosomal protein L9 N-domain
species: Escherichia coli [TaxId: 562]

 Score = 54.6 bits (132), Expect = 1e-11
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 11 QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAE 66
          Q+IL + VA LG  G  ++VKAG+ RN+L P GKA   T   ++  +     +EA+
Sbjct: 2  QVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAK 57

>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]} Length = 55

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: Ribosomal protein L9 N-domain
domain: Ribosomal protein L9 N-domain
species: Thermus thermophilus [TaxId: 274]

 Score = 52.3 bits (126), Expect = 9e-11
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 11 QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAE 66
          ++IL E +  LG  GQ++DVK G+ RNYL P G A + T   LK +   E RI A+
Sbjct: 2  KVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKAL---EARIRAQ 54

>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 52

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: Ribosomal protein L9 N-domain
domain: Ribosomal protein L9 N-domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 49.2 bits (118), Expect = 1e-09
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 11 QIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEE 61
          ++I  +DV  +GKKG++ +V  G+  N+L   G A   TP  LK ++ +++
Sbjct: 2  KVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQ 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d2gycf2	58	Ribosomal protein L9 N-domain {Escherichia coli [T	99.96
d2j01i2	55	Ribosomal protein L9 N-domain {Thermus thermophilu	99.95
d2hbaa1	52	Ribosomal protein L9 N-domain {Bacillus stearother	99.95
d1diva1	94	Ribosomal protein L9 C-domain {Bacillus stearother	99.94
d2gycf1	91	Ribosomal protein L9 C-domain {Escherichia coli [T	99.92
d2j01i1	91	Ribosomal protein L9 C-domain {Thermus thermophilu	99.91

>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: Ribosomal protein L9 N-domain
domain: Ribosomal protein L9 N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=9.3e-30  Score=163.83  Aligned_cols=55  Identities=38%  Similarity=0.595  Sum_probs=51.2

Q ss_pred             eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHH
Q 031586           10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIE   64 (157)
Q Consensus        10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~   64 (157)
                      |+|||++||++||++||+|+|+||||||||||+|+|++||++|++.++.++++.+
T Consensus         1 MkVIL~~dv~~lG~~Gdvv~Vk~GyaRNyLiP~glA~~at~~n~~~~~~~~~~~e   55 (58)
T d2gycf2           1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELE   55 (58)
T ss_dssp             CEEEECSSSSSCCCSCEEEECCTTTTTTTTTTTTSEEECCCHHHHHHHHHHHHHH
T ss_pred             CeEEEccccccCCCCCCEEEEccchhHHHhccCCceecCCHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999986665444

>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: Ribosomal protein L9 N-domain
domain: Ribosomal protein L9 N-domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.1e-29  Score=161.57  Aligned_cols=52  Identities=40%  Similarity=0.642  Sum_probs=49.1

Q ss_pred             eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHH
Q 031586           10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEE   61 (157)
Q Consensus        10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~   61 (157)
                      |+|||++||+|||++||||+|++|||||||||+|+|++||++|+++++.+++
T Consensus         1 MkVILl~dV~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~at~~nl~~~~~~~~   52 (55)
T d2j01i2           1 MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIR   52 (55)
T ss_dssp             CEEEECSCCSSSCSTTCEEECCHHHHHHTTTTTTSEEECCHHHHHHHHHHHH
T ss_pred             CEEEEccccccCCCCCCEEEEChhhHHHHhcccCchhhcCHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999975444

>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: Ribosomal protein L9 N-domain
domain: Ribosomal protein L9 N-domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=2.2e-29  Score=158.63  Aligned_cols=51  Identities=33%  Similarity=0.599  Sum_probs=48.8

Q ss_pred             eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHH
Q 031586           10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEE   60 (157)
Q Consensus        10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~   60 (157)
                      |+|||++||++||++||+|+|++|||||||||+|+|++||++|+++++.++
T Consensus         1 MkVIL~~dv~~lG~~GdiV~Vk~GyarN~LiP~g~A~~at~~n~~~~~~~k   51 (52)
T d2hbaa1           1 MKVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQK   51 (52)
T ss_dssp             CEEEESSCBTTTBCTTCEEECCHHHHHHTTTTTTSEEECCHHHHHHHHHHH
T ss_pred             CEEEEcccccccCCCCCEEEEcccchhHhhccCCchhhCCHHHHHHHHHhh
Confidence            899999999999999999999999999999999999999999999987554

>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L9 C-domain
superfamily: Ribosomal protein L9 C-domain
family: Ribosomal protein L9 C-domain
domain: Ribosomal protein L9 C-domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=3.4e-27  Score=165.37  Aligned_cols=90  Identities=30%  Similarity=0.511  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHhccCCeEEEEEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc-CccceeeEEEEEEeCCC
Q 031586           67 KKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP-EIRETGEYIAQLKLHPE  145 (157)
Q Consensus        67 ~~~~~~~a~~~~~~L~~~~~l~i~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~-~Ik~~G~~~v~v~l~~~  145 (157)
                      +++.+++|++++++|++. .|+|.+++|++|+||||||+.||+++|.+++|++||+++|.|+ |||++|+|+|+|+||++
T Consensus         3 ~~~~~~~A~~la~~L~~~-~i~i~~k~ge~GkLfGSVt~~dI~~~l~~~~g~~idk~~I~l~~~IK~~G~y~v~i~Lh~~   81 (94)
T d1diva1           3 AAEELANAKKLKEQLEKL-TVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHPE   81 (94)
T ss_dssp             HHHHHHHHHHHHHHHTTC-CEEEEECBCGGGEEEEEECHHHHHHHHHHHHCCCCCGGGBCCCSCEEESEEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHhhCC-EEEEEEEECCCCeeEecccHHHHHHHHHHccCceecHHHhhccCchhhcEeEEEEEEecCC
Confidence            345667899999999998 7999999999999999999999999999888999999999998 59999999999999999


Q ss_pred             cEEEEEEEEeeC
Q 031586          146 VTARIRLNVFAN  157 (157)
Q Consensus       146 v~~~l~v~V~~~  157 (157)
                      |+|+|+|.|++.
T Consensus        82 V~a~i~v~V~~e   93 (94)
T d1diva1          82 VTATLKVHVTEQ   93 (94)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             eEEEEEEEEEeC
Confidence            999999999873

>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L9 C-domain
superfamily: Ribosomal protein L9 C-domain
family: Ribosomal protein L9 C-domain
domain: Ribosomal protein L9 C-domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=4.8e-26  Score=158.65  Aligned_cols=88  Identities=31%  Similarity=0.468  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHhccCCeEEEEEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc--CccceeeEEEEEEeCCCc
Q 031586           69 RVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP--EIRETGEYIAQLKLHPEV  146 (157)
Q Consensus        69 ~~~~~a~~~~~~L~~~~~l~i~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~--~Ik~~G~~~v~v~l~~~v  146 (157)
                      +.++.|++++++|+++..|+|.+++|++|+||||||+.||+++|.++ |++||++.|.||  +||++|+|+|+|+||++|
T Consensus         2 e~l~~A~~~a~kl~~~~~i~i~~kage~GkLfGSVt~~dI~~~l~~~-g~~Idk~~I~l~~~~IK~lG~y~v~i~Lh~~V   80 (91)
T d2gycf1           2 EVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAA-GVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEV   80 (91)
T ss_dssp             HHHHHHHHHHHHHTTTCCCEEEECEEETTEESSCCCHHHHHHHHTTT-TCCCCSTTSCCSSCCCCBSSEEEEEECSSSSC
T ss_pred             hHHHHHHHHHHHhcCCcEEEEEEEeCCCCeeeeecCHHHHHHHHHHc-CCcccHHHEECCCccccccEEEEEEEEEcCCE
Confidence            45678999999999963599999999999999999999999999998 999999999997  399999999999999999


Q ss_pred             EEEEEEEEeeC
Q 031586          147 TARIRLNVFAN  157 (157)
Q Consensus       147 ~~~l~v~V~~~  157 (157)
                      +|+++|+|++.
T Consensus        81 ~~~i~v~Vv~e   91 (91)
T d2gycf1          81 FAKVIVNVVAE   91 (91)
T ss_dssp             CEEEEEEEEEC
T ss_pred             EEEEEEEEEEC
Confidence            99999999874

>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L9 C-domain
superfamily: Ribosomal protein L9 C-domain
family: Ribosomal protein L9 C-domain
domain: Ribosomal protein L9 C-domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=9.1e-27  Score=162.29  Aligned_cols=86  Identities=35%  Similarity=0.600  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHhccCCeEEEEEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc-CccceeeEEEEEEeCCCcE
Q 031586           69 RVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP-EIRETGEYIAQLKLHPEVT  147 (157)
Q Consensus        69 ~~~~~a~~~~~~L~~~~~l~i~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~-~Ik~~G~~~v~v~l~~~v~  147 (157)
                      +.+++|++++++|++. .++|.+++|+ |+||||||+.||+++|.+++|++||+++|.|+ |||++|+|+|+|+||+||+
T Consensus         5 e~~~~A~~l~~~L~~~-~i~i~~k~~e-gkLfGSVt~~dIa~~l~~~~g~~Idk~~I~l~~~IK~~G~~~v~i~L~~~V~   82 (91)
T d2j01i1           5 ERKAEAERLKEILENL-TLTIPVRAGE-TKIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHPEVP   82 (91)
T ss_dssp             STTTTTHHHHHHHTTC-BCCCCCCBCS-SSBSSCCCHHHHHHHHHTTTCCCCCTTTTCCSSCCCSCEEEECCCSSSSCCC
T ss_pred             HHHHHHHHHHHHhcCC-EEEEEEEecC-CceecccCHHHHHHHHHhccCceechHHhhccccccceEEEEEEEEecCCEE
Confidence            4456789999999998 7999999995 89999999999999999888999999999998 5999999999999999999


Q ss_pred             EEEEEEEee
Q 031586          148 ARIRLNVFA  156 (157)
Q Consensus       148 ~~l~v~V~~  156 (157)
                      |+|+|+|++
T Consensus        83 a~i~v~VvA   91 (91)
T d2j01i1          83 IQLKVSVVA   91 (91)
T ss_dssp             CEEEECCC-
T ss_pred             EEEEEEEEC
Confidence            999999974