Citrus Sinensis ID: 031587

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
MDTNGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRAEF
ccccccEEEEEEEEEEEEcEEEEEEEEccEEEEEEEEccccHHHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEEEEEEccccccccccccccccccccccHHHHHHccccEEEEEccccEEccHHHHHHHHHccccEEEccccccc
cccccccEEEEEEEccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHccccEEEEccccccHHHccccEcEEEEEccccccccccccccccccccccccccccHHHHHHHcccEEEEEccccccccHHHHHHHHHccccHHHHHHHHcc
mdtngtdidvvghtctqqeyEIHDLFFANLNLILSEVDSVGTISASLVTYASIQalkpdliinagtaggfkakgasigdvflisdvafhdrripipvfdlygvgqrqafstpnllRELNLKVcklstgdsldmssqdetsitandatiKDMEVRAEF
mdtngtdidvvGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLStgdsldmssqdetsitandatikDMEVRAEF
MDTNGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINagtaggfkakgaSIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRAEF
*******IDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKL********************************
*****TD*DVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRAEF
MDTNGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRAEF
****GTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVR***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDTNGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRAEF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query157 2.2.26 [Sep-21-2011]
Q9T0I8267 5'-methylthioadenosine/S- yes no 0.738 0.434 0.818 4e-52
Q7XA67254 5'-methylthioadenosine/S- no no 0.738 0.456 0.758 5e-48
C4L559233 5'-methylthioadenosine/S- yes no 0.439 0.296 0.352 5e-07
A5UCP4229 5'-methylthioadenosine/S- yes no 0.318 0.218 0.431 2e-05
A0KZQ7236 5'-methylthioadenosine/S- yes no 0.541 0.360 0.329 2e-05
A6VPH1230 5'-methylthioadenosine/S- yes no 0.324 0.221 0.384 3e-05
B0URX4229 5'-methylthioadenosine/S- yes no 0.834 0.572 0.283 3e-05
Q0I5K4229 5'-methylthioadenosine/S- yes no 0.834 0.572 0.283 3e-05
A0KIZ1230 5'-methylthioadenosine/S- yes no 0.433 0.295 0.371 3e-05
Q8EPT8229 5'-methylthioadenosine/S- yes no 0.764 0.524 0.269 5e-05
>sp|Q9T0I8|MTN1_ARATH 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 OS=Arabidopsis thaliana GN=MTN1 PE=1 SV=1 Back     alignment and function desciption
 Score =  203 bits (516), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 108/116 (93%)

Query: 37  VDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP 96
           +DSVGT+ ASL+T+ASIQALKPD+IINAGT GGFK KGA+IGDVFL+SDV FHDRRIPIP
Sbjct: 87  IDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDRRIPIP 146

Query: 97  VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDME 152
           +FDLYGVG RQAFSTPNLL+ELNLK+ +LSTGDSLDMS+QDET I ANDAT+KDME
Sbjct: 147 MFDLYGVGLRQAFSTPNLLKELNLKIGRLSTGDSLDMSTQDETLIIANDATLKDME 202
Enzyme of the methionine cycle that catalyzes the irreversible cleavage of the glycosidic bond in 5'-methylthioadenosine (MTA) to adenine and 5'-methylthioribose. Contributes to the maintenance of AdoMet homeostasis and is required to sustain high rates of ethylene synthesis. Inactive towards S-adenosylhomocysteine (SAH/AdoHcy).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: 9
>sp|Q7XA67|MTN2_ARATH 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 OS=Arabidopsis thaliana GN=MTN2 PE=1 SV=1 Back     alignment and function description
>sp|C4L559|MTNN_EXISA 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|A5UCP4|MTNN_HAEIE 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Haemophilus influenzae (strain PittEE) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|A0KZQ7|MTNN_SHESA 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Shewanella sp. (strain ANA-3) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|A6VPH1|MTNN_ACTSZ 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|B0URX4|MTNN_HAES2 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Haemophilus somnus (strain 2336) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|Q0I5K4|MTNN_HAES1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Haemophilus somnus (strain 129Pt) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|A0KIZ1|MTNN_AERHH 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|Q8EPT8|MTNN_OCEIH 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=mtnN PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query157
255576741 266 mta/sah nucleosidase, putative [Ricinus 0.738 0.436 0.887 6e-53
357467479 261 5'-methylthioadenosine/S-adenosylhomocys 0.789 0.475 0.776 2e-52
217073232 262 unknown [Medicago truncatula] 0.789 0.473 0.776 3e-52
224078057 263 predicted protein [Populus trichocarpa] 0.815 0.486 0.806 7e-52
449524090 266 PREDICTED: 5'-methylthioadenosine/S-aden 0.815 0.481 0.798 1e-51
224105257 263 predicted protein [Populus trichocarpa] 0.738 0.441 0.862 2e-51
448872668 283 5'-methylthioadenosine/s-adenosylhomocys 0.738 0.409 0.844 4e-51
356508039 265 PREDICTED: 5'-methylthioadenosine/S-aden 0.738 0.437 0.836 7e-51
363808346 266 uncharacterized protein LOC100779419 [Gl 0.738 0.436 0.827 2e-50
15234791 267 methylthioadenosine nucleosidase 1 [Arab 0.738 0.434 0.818 2e-50
>gi|255576741|ref|XP_002529258.1| mta/sah nucleosidase, putative [Ricinus communis] gi|223531294|gb|EEF33136.1| mta/sah nucleosidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 103/116 (88%), Positives = 110/116 (94%)

Query: 37  VDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP 96
           VDSVGTISASLVTYASIQAL+PDLIINAGT+GGFKAKGASIGDV+L+SDVAFHDRRIPIP
Sbjct: 86  VDSVGTISASLVTYASIQALQPDLIINAGTSGGFKAKGASIGDVYLVSDVAFHDRRIPIP 145

Query: 97  VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDME 152
           VFDLYGVG RQA STPNLL+ELNLKV KLSTGDSLDMS+QDE SI ANDA +KDME
Sbjct: 146 VFDLYGVGLRQACSTPNLLKELNLKVGKLSTGDSLDMSAQDEASIIANDAVVKDME 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357467479|ref|XP_003604024.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Medicago truncatula] gi|355493072|gb|AES74275.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Medicago truncatula] gi|388498734|gb|AFK37433.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217073232|gb|ACJ84975.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224078057|ref|XP_002305481.1| predicted protein [Populus trichocarpa] gi|118481001|gb|ABK92454.1| unknown [Populus trichocarpa] gi|222848445|gb|EEE85992.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449524090|ref|XP_004169056.1| PREDICTED: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224105257|ref|XP_002313743.1| predicted protein [Populus trichocarpa] gi|222850151|gb|EEE87698.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|448872668|gb|AGE46019.1| 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase 1-like protein [Elaeis guineensis] Back     alignment and taxonomy information
>gi|356508039|ref|XP_003522770.1| PREDICTED: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|363808346|ref|NP_001242507.1| uncharacterized protein LOC100779419 [Glycine max] gi|255641117|gb|ACU20837.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15234791|ref|NP_195591.1| methylthioadenosine nucleosidase 1 [Arabidopsis thaliana] gi|75213779|sp|Q9T0I8.1|MTN1_ARATH RecName: Full=5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1; Short=AtMTN1; AltName: Full=5'-methylthioadenosine nucleosidase; Short=MTA nucleosidase; AltName: Full=MTA/SAH nucleosidase 1; Short=AtMTAN1; AltName: Full=S-adenosylhomocysteine nucleosidase; Short=AdoHcy nucleosidase; Short=SAH nucleosidase; Short=SRH nucleosidase gi|118137896|pdb|2H8G|A Chain A, 5'-Methylthioadenosine Nucleosidase From Arabidopsis Thaliana gi|118137897|pdb|2H8G|B Chain B, 5'-Methylthioadenosine Nucleosidase From Arabidopsis Thaliana gi|171848871|pdb|2QSU|A Chain A, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine Nucleosidase In Apo Form gi|171848872|pdb|2QSU|B Chain B, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine Nucleosidase In Apo Form gi|171848873|pdb|2QTG|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'- Methylthioadenosine Nucleosidase In Complex With 5'- Methylthiotubercidin gi|171848874|pdb|2QTG|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'- Methylthioadenosine Nucleosidase In Complex With 5'- Methylthiotubercidin gi|171848875|pdb|2QTT|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'- Methylthioadenosine Nucleosidase In Complex With Formycin A gi|171848876|pdb|2QTT|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'- Methylthioadenosine Nucleosidase In Complex With Formycin A gi|299856755|pdb|3LGS|A Chain A, A. Thaliana Mta Nucleosidase In Complex With S-Adenosylhomocysteine gi|299856756|pdb|3LGS|B Chain B, A. Thaliana Mta Nucleosidase In Complex With S-Adenosylhomocysteine gi|299856757|pdb|3LGS|C Chain C, A. Thaliana Mta Nucleosidase In Complex With S-Adenosylhomocysteine gi|299856758|pdb|3LGS|D Chain D, A. Thaliana Mta Nucleosidase In Complex With S-Adenosylhomocysteine gi|13878069|gb|AAK44112.1|AF370297_1 unknown protein [Arabidopsis thaliana] gi|4490332|emb|CAB38614.1| putative protein [Arabidopsis thaliana] gi|7270863|emb|CAB80543.1| putative protein [Arabidopsis thaliana] gi|23296997|gb|AAN13219.1| unknown protein [Arabidopsis thaliana] gi|332661576|gb|AEE86976.1| methylthioadenosine nucleosidase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query157
TAIR|locus:2141806267 MTN1 "methylthioadenosine nucl 0.738 0.434 0.732 3.6e-41
TAIR|locus:2116925254 MTN2 [Arabidopsis thaliana (ta 0.738 0.456 0.655 1.7e-36
TAIR|locus:2141806 MTN1 "methylthioadenosine nucleosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 85/116 (73%), Positives = 98/116 (84%)

Query:    37 VDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIP 96
             +DSVGT+ ASL+T+ASIQALKPD+IIN            +IGDVFL+SDV FHDRRIPIP
Sbjct:    87 IDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDRRIPIP 146

Query:    97 VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDME 152
             +FDLYGVG RQAFSTPNLL+ELNLK+ +LSTGDSLDMS+QDET I ANDAT+KDME
Sbjct:   147 MFDLYGVGLRQAFSTPNLLKELNLKIGRLSTGDSLDMSTQDETLIIANDATLKDME 202
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0009116 "nucleoside metabolic process" evidence=ISS
GO:0008930 "methylthioadenosine nucleosidase activity" evidence=IDA;NAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0000003 "reproduction" evidence=IGI
GO:0001944 "vasculature development" evidence=IGI
GO:0048573 "photoperiodism, flowering" evidence=RCA
TAIR|locus:2116925 MTN2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9T0I8MTN1_ARATH3, ., 2, ., 2, ., 90.81890.73880.4344yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.90.824
3rd Layer3.2.20.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IV1398
SubName- Full=Putative uncharacterized protein; (263 aa)
(Populus trichocarpa)
Predicted Functional Partners:
ACS3
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (467 aa)
     •• 0.901
ACS4
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (468 aa)
     •• 0.901
ACS8
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (449 aa)
     •• 0.901
ACS7
1-aminocyclopropane-1-carboxylate (480 aa)
     •• 0.900
ACS1
SubName- Full=Putative uncharacterized protein; (481 aa)
     •• 0.900
ACS6
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (440 aa)
     •• 0.900
ACS2
1-aminocyclopropane-1-carboxylate (486 aa)
     •• 0.900
ACS5
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (446 aa)
     •• 0.900
grail3.0009003101
spermidine synthase (335 aa)
     •• 0.900
fgenesh4_pg.C_LG_XII000148
spermidine synthase (EC-2.5.1.16) (347 aa)
     •• 0.900

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
PLN02584249 PLN02584, PLN02584, 5'-methylthioadenosine nucleos 6e-78
COG0775234 COG0775, Pfs, Nucleoside phosphorylase [Nucleotide 5e-08
TIGR01704228 TIGR01704, MTA/SAH-Nsdase, 5'-methylthioadenosine/ 3e-06
pfam01048232 pfam01048, PNP_UDP_1, Phosphorylase superfamily 6e-06
PRK05584230 PRK05584, PRK05584, 5'-methylthioadenosine/S-adeno 4e-05
TIGR03664222 TIGR03664, fut_nucase, futalosine nucleosidase 0.002
>gnl|CDD|178196 PLN02584, PLN02584, 5'-methylthioadenosine nucleosidase Back     alignment and domain information 
 Score =  231 bits (591), Expect = 6e-78
 Identities = 91/116 (78%), Positives = 100/116 (86%)

Query: 37  VDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP 96
           VDSVGT+ ASLVTYA+IQALKPDLIINAGTAGGFKAKGA+IGDVFL + VA HDRRIPIP
Sbjct: 69  VDSVGTVPASLVTYAAIQALKPDLIINAGTAGGFKAKGAAIGDVFLATAVANHDRRIPIP 128

Query: 97  VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDME 152
           VFD YGVG R AF TPNL++ L LK   LSTG+SLDM+ QDE SI ANDAT+KDME
Sbjct: 129 VFDKYGVGTRDAFPTPNLIKALGLKEGVLSTGNSLDMTEQDEESIKANDATVKDME 184

Length = 249
>gnl|CDD|223846 COG0775, Pfs, Nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|130765 TIGR01704, MTA/SAH-Nsdase, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase Back     alignment and domain information
>gnl|CDD|216264 pfam01048, PNP_UDP_1, Phosphorylase superfamily Back     alignment and domain information
>gnl|CDD|180148 PRK05584, PRK05584, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>gnl|CDD|234302 TIGR03664, fut_nucase, futalosine nucleosidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 157
TIGR01704228 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylho 99.97
PRK14697233 bifunctional 5'-methylthioadenosine/S-adenosylhomo 99.96
PRK06714236 S-adenosylhomocysteine nucleosidase; Validated 99.96
PLN02584249 5'-methylthioadenosine nucleosidase 99.96
PRK06698 459 bifunctional 5'-methylthioadenosine/S-adenosylhomo 99.95
PRK07164218 5'-methylthioadenosine/S-adenosylhomocysteine nucl 99.95
PRK05584230 5'-methylthioadenosine/S-adenosylhomocysteine nucl 99.94
PRK13374233 purine nucleoside phosphorylase; Provisional 99.94
PRK11178251 uridine phosphorylase; Provisional 99.93
TIGR01718245 Uridine-psphlse uridine phosphorylase. Sequences f 99.93
PRK05819235 deoD purine nucleoside phosphorylase; Reviewed 99.93
COG0775234 Pfs Nucleoside phosphorylase [Nucleotide transport 99.93
PRK08236212 hypothetical protein; Provisional 99.93
PRK07115258 AMP nucleosidase; Provisional 99.92
TIGR00107232 deoD purine-nucleoside phosphorylase, family 1 (de 99.92
TIGR03664222 fut_nucase futalosine nucleosidase. This enzyme ca 99.91
TIGR01721266 AMN-like AMP nucleosidase, putative. The sequences 99.91
PRK06026212 5'-methylthioadenosine/S-adenosylhomocysteine nucl 99.9
TIGR01705212 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylh 99.89
PRK08292489 AMP nucleosidase; Provisional 99.87
PF01048234 PNP_UDP_1: Phosphorylase superfamily; InterPro: IP 99.86
TIGR01719287 euk_UDPppase uridine phosphorylase. This model rep 99.85
PRK05634185 nucleosidase; Provisional 99.85
TIGR01717477 AMP-nucleosdse AMP nucleosidase. This model repres 99.85
COG0813236 DeoD Purine-nucleoside phosphorylase [Nucleotide t 99.85
COG2820248 Udp Uridine phosphorylase [Nucleotide transport an 99.84
TIGR03468212 HpnG hopanoid-associated phosphorylase. The sequen 99.84
TIGR01697248 PNPH-PUNA-XAPA inosine guanosine and xanthosine ph 99.8
TIGR01700249 PNPH purine nucleoside phosphorylase I, inosine an 99.78
PRK07077238 hypothetical protein; Provisional 99.77
TIGR01694241 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase 99.76
PRK08666261 5'-methylthioadenosine phosphorylase; Validated 99.73
PRK08202272 purine nucleoside phosphorylase; Provisional 99.7
PRK09136245 5'-methylthioadenosine phosphorylase; Validated 99.52
TIGR01699248 XAPA xanthosine phosphorylase. (TIGR01698, TIGR017 99.51
KOG3728308 consensus Uridine phosphorylase [Nucleotide transp 98.16
PRK08564267 5'-methylthioadenosine phosphorylase II; Reviewed 97.98
COG0005262 Pnp Purine nucleoside phosphorylase [Nucleotide tr 97.65
PRK08931289 5'-methylthioadenosine phosphorylase; Provisional 97.64
TIGR01698237 PUNP purine nucleotide phosphorylase. methylthioad 97.63
KOG3985283 consensus Methylthioadenosine phosphorylase MTAP [ 97.58
PRK07432290 5'-methylthioadenosine phosphorylase; Provisional 97.46
PRK07823264 5'-methylthioadenosine phosphorylase; Validated 97.27
PF06516 314 NUP: Purine nucleoside permease (NUP); InterPro: I 97.02
COG5042 349 NUP Purine nucleoside permease [Nucleotide transpo 94.14
KOG3984286 consensus Purine nucleoside phosphorylase [Nucleot 91.98
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase Back     alignment and domain information 
Probab=99.97  E-value=1.4e-29  Score=198.46  Aligned_cols=143  Identities=25%  Similarity=0.333  Sum_probs=116.3

Q ss_pred             ccccccceeEEEcCeeEEEEEEeecCC----CCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecce
Q 031587           11 VGHTCTQQEYEIHDLFFANLNLILSEV----DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDV   86 (157)
Q Consensus        11 ~~~~~~~~~~~~~~~~f~~~~l~~~gv----~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~   86 (157)
                      ..++...+++.+++++||.+.+....|    +|||++|||+++++||++|+|+.||++|+|||++ +++++||+||++++
T Consensus        16 ~~~l~~~~~~~~~~~~~~~g~~~g~~v~i~~sGiG~vnAA~~~~~li~~~~p~~II~~G~aG~l~-~~l~~GDvvi~~~~   94 (228)
T TIGR01704        16 RDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLA-PTLKVGDIVVSDEA   94 (228)
T ss_pred             HHHhhcCceEEECCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHhCCCCEEEEEeeccCCC-CCCccCCEEEEEEE
Confidence            345666778889999999754433333    4499999999999999999999999999999999 89999999999999


Q ss_pred             EEecCCCCccCccccCCCCCCCCC-----ChhHh---------hcCCceEEeEeecceeeCCHHHHHHHHh-C-CCcEEe
Q 031587           87 AFHDRRIPIPVFDLYGVGQRQAFS-----TPNLL---------RELNLKVCKLSTGDSLDMSSQDETSITA-N-DATIKD  150 (157)
Q Consensus        87 ~~~d~~~~~~~f~~~~~~~~p~~~-----~~~l~---------~~~~~~~G~i~S~d~fi~~~~~~~~l~~-~-~a~~vd  150 (157)
                      +++|.+.+  .| .|.+++.|..|     +++|.         .+.+++.|+++|+|.|+.+++++++|++ + ++.++|
T Consensus        95 ~~~d~~~~--~~-~~~~g~~~~~~~~~~~d~~L~~~~~~~~~~~~~~~~~G~i~T~d~f~~~~~~~~~l~~~~~~~~~vd  171 (228)
T TIGR01704        95 RYHDADVT--AF-GYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVE  171 (228)
T ss_pred             EEccCccc--cc-CCcCCcCCCCCceeeCCHHHHHHHHHHHHhcCCCeEEEEEEEcChhcCCHHHHHHHHHHCCcccEec
Confidence            99998765  45 36666665433     33332         2467999999999999999988888885 6 899999


Q ss_pred             ccccccC
Q 031587          151 MEVRAEF  157 (157)
Q Consensus       151 ME~aav~  157 (157)
                      ||+||++
T Consensus       172 ME~aAva  178 (228)
T TIGR01704       172 MEATAIA  178 (228)
T ss_pred             ccHHHHH
Confidence            9999973

There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional Back     alignment and domain information
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>PLN02584 5'-methylthioadenosine nucleosidase Back     alignment and domain information
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated Back     alignment and domain information
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional Back     alignment and domain information
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>PRK13374 purine nucleoside phosphorylase; Provisional Back     alignment and domain information
>PRK11178 uridine phosphorylase; Provisional Back     alignment and domain information
>TIGR01718 Uridine-psphlse uridine phosphorylase Back     alignment and domain information
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed Back     alignment and domain information
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08236 hypothetical protein; Provisional Back     alignment and domain information
>PRK07115 AMP nucleosidase; Provisional Back     alignment and domain information
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD) Back     alignment and domain information
>TIGR03664 fut_nucase futalosine nucleosidase Back     alignment and domain information
>TIGR01721 AMN-like AMP nucleosidase, putative Back     alignment and domain information
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative Back     alignment and domain information
>PRK08292 AMP nucleosidase; Provisional Back     alignment and domain information
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2 Back     alignment and domain information
>TIGR01719 euk_UDPppase uridine phosphorylase Back     alignment and domain information
>PRK05634 nucleosidase; Provisional Back     alignment and domain information
>TIGR01717 AMP-nucleosdse AMP nucleosidase Back     alignment and domain information
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR03468 HpnG hopanoid-associated phosphorylase Back     alignment and domain information
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family Back     alignment and domain information
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific Back     alignment and domain information
>PRK07077 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase Back     alignment and domain information
>PRK08666 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>PRK08202 purine nucleoside phosphorylase; Provisional Back     alignment and domain information
>PRK09136 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>TIGR01699 XAPA xanthosine phosphorylase Back     alignment and domain information
>KOG3728 consensus Uridine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed Back     alignment and domain information
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional Back     alignment and domain information
>TIGR01698 PUNP purine nucleotide phosphorylase Back     alignment and domain information
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional Back     alignment and domain information
>PRK07823 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>PF06516 NUP: Purine nucleoside permease (NUP); InterPro: IPR009486 This family consists of several purine nucleoside permease from both bacteria and fungi [] Back     alignment and domain information
>COG5042 NUP Purine nucleoside permease [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3984 consensus Purine nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
2h8g_A267 5'-Methylthioadenosine Nucleosidase From Arabidopsi 2e-45
3bsf_A254 Crystal Structure Of The MtaSAH NUCLEOSIDASE Length 3e-40
>pdb|2H8G|A Chain A, 5'-Methylthioadenosine Nucleosidase From Arabidopsis Thaliana Length = 267 Back     alignment and structure 
Iteration: 1

 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 99/119 (83%)
Query: 37  VDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIP 96
           +DSVGT+ ASL+T+ASIQALKPD+IIN            +IGDVFL+SDV FHDRRIPIP
Sbjct: 87  IDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDRRIPIP 146
Query: 97  VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRA 155
           +FDLYGVG RQAFSTPNLL+ELNLK+ +LSTGDSLDMS+QDET I ANDAT+KDME  A
Sbjct: 147 MFDLYGVGLRQAFSTPNLLKELNLKIGRLSTGDSLDMSTQDETLIIANDATLKDMEGAA 205
>pdb|3BSF|A Chain A, Crystal Structure Of The MtaSAH NUCLEOSIDASE Length = 254 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
3bsf_A254 AT4G34840, nucleosidase; alpha-beta, hydrolase; HE 1e-30
2h8g_A267 5'-methylthioadenosine nucleosidase; protein-adeni 2e-29
3dp9_A231 MTA/SAH nucleosidase; vibrio cholerae 5'-methylthi 3e-17
3o4v_A234 MTA/SAH nucleosidase; mixed alpha/beta dimer, hydr 2e-15
3bl6_A230 5'-methylthioadenosine nucleosidase/S- adenosylhom 4e-15
3eei_A233 5-methylthioadenosine nucleosidase/S- adenosylhomo 5e-15
3nm6_B230 MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A { 2e-14
1zos_A230 5'-methylthioadenosine / S-adenosylhomocysteine nu 3e-14
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 1e-04
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana} Length = 254 Back     alignment and structure
 Score =  110 bits (275), Expect = 1e-30
 Identities = 89/119 (74%), Positives = 103/119 (86%)

Query: 37  VDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP 96
           V+SVGT+ ASLVTYASI A++PDLIINAGTAGGFKAKGA I DV+++S VAFHDRRIP+P
Sbjct: 74  VESVGTVPASLVTYASILAIQPDLIINAGTAGGFKAKGACISDVYVVSTVAFHDRRIPVP 133

Query: 97  VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRA 155
           V D+YGVG R  F TPNL++ELNLKV +LSTGDS+DMS  DE SITANDAT+KDME  A
Sbjct: 134 VLDIYGVGMRNTFPTPNLIKELNLKVGRLSTGDSMDMSPHDEESITANDATVKDMEGAA 192
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A* Length = 267 Back     alignment and structure
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} Length = 231 Back     alignment and structure
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* Length = 234 Back     alignment and structure
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus} Length = 230 Back     alignment and structure
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} Length = 233 Back     alignment and structure
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} PDB: 3nm5_A* 3nm4_A* Length = 230 Back     alignment and structure
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A* Length = 230 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query157
4g41_A236 MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, 99.95
3o4v_A234 MTA/SAH nucleosidase; mixed alpha/beta dimer, hydr 99.95
3dp9_A231 MTA/SAH nucleosidase; vibrio cholerae 5'-methylthi 99.95
3eei_A233 5-methylthioadenosine nucleosidase/S- adenosylhomo 99.94
3nm6_B230 MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A { 99.94
3bsf_A254 AT4G34840, nucleosidase; alpha-beta, hydrolase; HE 99.94
2h8g_A267 5'-methylthioadenosine nucleosidase; protein-adeni 99.94
3bl6_A230 5'-methylthioadenosine nucleosidase/S- adenosylhom 99.93
1zos_A230 5'-methylthioadenosine / S-adenosylhomocysteine nu 99.93
3u40_A242 Pnpase, purine nucleoside phosphorylase; structura 99.91
3uaw_A235 PNP, purine nucleoside phosphorylase DEOD-type; ne 99.9
3ddo_A253 Urdpase, upase, uridine phosphorylase; transferase 99.9
1z34_A235 Purine nucleoside phosphorylase; alpha-beta-alpha 99.9
1odk_A235 Purine nucleoside phosphorylase; alpha-beta protei 99.9
1je0_A236 MTAP;, 5'-methylthioadenosine phosphorylase; alpha 99.9
3phc_A275 Purine nucleoside phosphorylase; PNP,immucillin, t 99.89
3mb8_A279 Purine nucleoside phosphorylase; PNP, immucillin H 99.89
1vhw_A253 Purine nucleoside phosphorylase; structural genomi 99.89
3qpb_A282 Uridine phosphorylase; hexamer, NP-I superfamily, 99.88
1ybf_A268 AMP nucleosidase; structural genomics, protein str 99.87
2b94_A267 Purine nucleoside phosphorylase; SGPP, structural 99.87
1t8s_A484 AMP nucleosidase; alpha-beta-alpha sandwich, alpha 99.85
3bje_A349 Nucleoside phosphorylase, putative; uridine phosph 99.84
3euf_A328 Uridine phosphorylase 1; nucleoside phosphorylase, 99.84
3p0f_A297 Uridine phosphorylase 2; transferase; HET: BAU; 1. 99.83
1cb0_A283 Protein (5'-deoxy-5'-methylthioadenosine phosphor; 99.77
1wta_A275 5'-methylthioadenosine phosphorylase; A/B structur 99.74
2a8y_A270 5'-methylthioadenosine phosphorylase (MTAP); alpha 99.73
3ozb_A259 Methylthioadenosine phosphorylase; 5'-methylthioin 99.64
3odg_A287 Xanthosine phosphorylase; structural genomics, PSI 99.64
1g2o_A268 Purine nucleoside phosphorylase; trimer, transitio 99.62
2p4s_A373 Purine nucleoside phosphorylase; transferase; HET: 99.61
1vmk_A277 Purine nucleoside phosphorylase; TM1596, structura 99.59
1tcv_A287 Purine-nucleoside phosphorylase; transferase; HET: 99.59
1qe5_A266 Pentosyltransferase; enzyme, purine nucleoside pho 99.5
3khs_A285 Purine nucleoside phosphorylase; alpha-beta struct 99.49
3fuc_A284 Purine nucleoside phosphorylase; recombinant, glyc 99.49
3phb_E324 Purine nucleoside phosphorylase; PNP,immucillin, t 99.42
3la8_A303 SMU.1229, putative purine nucleoside phosphorylase 99.42
>4g41_A MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, S-adenosylhomocysteine, cleavag; HET: MTA; 1.45A {Streptococcus pyogenes} Back     alignment and structure
Probab=99.95  E-value=1e-27  Score=186.52  Aligned_cols=141  Identities=23%  Similarity=0.330  Sum_probs=113.5

Q ss_pred             cccccceeEEEcCeeEEEEEEeecCC----CCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceE
Q 031587           12 GHTCTQQEYEIHDLFFANLNLILSEV----DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVA   87 (157)
Q Consensus        12 ~~~~~~~~~~~~~~~f~~~~l~~~gv----~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~   87 (157)
                      .++...++.+.+++.||.+.+....|    +|||++|||+++++|+.+|+++.+|++|+|||++ +++++||+||+++++
T Consensus        23 ~~l~~~~~~~~~~~~~~~G~~~g~~Vvv~~~G~G~~~aa~~~~~l~~~~~~~~ii~~G~aGgl~-~~i~~GDvvi~~~~i  101 (236)
T 4g41_A           23 ANLLDAQEHQVLSKTYYTGRFGKHELILVQSGVGKVMSAMTVAILVEHFKAQAIINTGSAGAVA-SHLAIGDVVVADRLV  101 (236)
T ss_dssp             HTCEEEEEEEETTEEEEEEEETTEEEEEEECCSHHHHHHHHHHHHHHTTCCSEEEEEEEECBCS-TTCCTTCEEEEEEEE
T ss_pred             HhccCCceEecCCcEEEEEEECCEEEEEEeCCCCHHHHHHHHHHHHHhCCCCEEEEEeeecCCC-CCCCCCeEEEEeeeE
Confidence            34555667788899988754433333    3499999999999999999999999999999999 999999999999999


Q ss_pred             EecCCCCccCccccCCCCCCCCC-----ChhHh---------hcCCceEEeEeecceeeCCHHHHHHHHh-C-CCcEEec
Q 031587           88 FHDRRIPIPVFDLYGVGQRQAFS-----TPNLL---------RELNLKVCKLSTGDSLDMSSQDETSITA-N-DATIKDM  151 (157)
Q Consensus        88 ~~d~~~~~~~f~~~~~~~~p~~~-----~~~l~---------~~~~~~~G~i~S~d~fi~~~~~~~~l~~-~-~a~~vdM  151 (157)
                      +||.+.+  .+ .|..++.|..|     +++|.         .+++++.|+++|+|.|+.+.+++++|++ + |++++||
T Consensus       102 ~~d~~~~--~~-~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~G~i~S~d~~~~~~~~~~~l~~~~~g~~~veM  178 (236)
T 4g41_A          102 YHDVDAT--AF-GYAYGQMAGQPLYYDCDPQFVAIFKQVLKHEKTNGQVGLIATGDSFVAGQDKIDQIKTAFSNVLAVEM  178 (236)
T ss_dssp             ESSCBCG--GG-TCCTTCCTTSCSSEECCHHHHHHHHHHHHHTTCCEEEEEEEECSBCCCCHHHHHHHHHHSTTCCEEES
T ss_pred             EcCCCCC--cc-CCcCCcCCCCCccccCCHHHHHHHHHHHHhcCCCeeeceEEecCCcccCHHHHHHHHHHcCCCeEEec
Confidence            9998765  33 25555554332     33332         3678999999999999999998888884 5 9999999


Q ss_pred             ccccc
Q 031587          152 EVRAE  156 (157)
Q Consensus       152 E~aav  156 (157)
                      |++|+
T Consensus       179 E~aa~  183 (236)
T 4g41_A          179 EGAAI  183 (236)
T ss_dssp             SHHHH
T ss_pred             hHHHH
Confidence            99987
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A* Back     alignment and structure
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} SCOP: c.56.2.1 Back     alignment and structure
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1 Back     alignment and structure
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} SCOP: c.56.2.0 PDB: 3nm5_A* 3nm4_A* 4ffs_A* Back     alignment and structure
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana} Back     alignment and structure
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A* Back     alignment and structure
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus} Back     alignment and structure
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A* Back     alignment and structure
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} SCOP: c.56.2.0 PDB: 3tl6_A* Back     alignment and structure
>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside phosphorylase I (NP-I) family, transferase; HET: ADN GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A* 1xe3_A 3uay_A* 3uaz_A* 4d8y_A 4d8x_A 4d8v_A 4d98_A 4d9h_A* 4da0_A* 4da6_A* 4da7_A* 4da8_A* 4dab_A* 4dae_A* 4dan_A* 4dao_A* 4dar_A* Back     alignment and structure
>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} SCOP: c.56.2.1 PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3nsr_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A ... Back     alignment and structure
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A* Back     alignment and structure
>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase, riken structural genomics/proteomics initiative, RSGI; 1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A* 1odi_A 1odl_A Back     alignment and structure
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A Back     alignment and structure
>3phc_A Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.00A {Plasmodium falciparum} PDB: 1q1g_A* 1nw4_A* 3fow_A* Back     alignment and structure
>3mb8_A Purine nucleoside phosphorylase; PNP, immucillin H, IMMH, TR; HET: IMH; 1.90A {Toxoplasma gondii} Back     alignment and structure
>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase; HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB: 1vhj_A* 3of3_A* 3occ_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A* 1pr5_A* 1pr0_A* 1pr6_A* 3onv_A 1pk7_A* 1k9s_A* 1pke_A* 1pk9_A 3ooe_A 3ooh_A 1ecp_A 1a69_A 1oty_A* ... Back     alignment and structure
>3qpb_A Uridine phosphorylase; hexamer, NP-I superfamily, pyrimidine salvage pathway, uridi phosphorylase, transition state; HET: R1P; 1.82A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI, NEW research center for structural genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron} SCOP: c.56.2.1 Back     alignment and structure
>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A* Back     alignment and structure
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold, hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP: c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A Back     alignment and structure
>3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase, structural medical structural genomics of pathogenic protozoa consorti MSGPP; HET: R1P; 1.44A {Trypanosoma brucei} Back     alignment and structure
>3euf_A Uridine phosphorylase 1; nucleoside phosphorylase, uridine rescue, 5- benzylacyclouridine, alternative splicing, glycosyltransferase, transferase; HET: BAU; 1.90A {Homo sapiens} PDB: 3eue_A* 3nbq_A 3ku4_A 3kuk_A* 3kvr_A 3kvy_A Back     alignment and structure
>3p0f_A Uridine phosphorylase 2; transferase; HET: BAU; 1.54A {Homo sapiens} PDB: 3p0e_A* 2xrf_A Back     alignment and structure
>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor; methylthioadenosine phosphorylase, purine nucleoside phospho purine salvage, adenine; HET: ADE; 1.70A {Homo sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A* 1sd2_A* 3ozc_A* 3ozd_A* 3oze_A Back     alignment and structure
>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase; HET: ADE; 1.78A {Aeropyrum pernix} Back     alignment and structure
>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta sheet, beta barrel, transferase; HET: MTA; 1.45A {Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A Back     alignment and structure
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A* Back     alignment and structure
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A* Back     alignment and structure
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A {Anopheles gambiae} Back     alignment and structure
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1 Back     alignment and structure
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A* Back     alignment and structure
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A Back     alignment and structure
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} SCOP: c.56.2.0 Back     alignment and structure
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ... Back     alignment and structure
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens} Back     alignment and structure
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 157
d1t8sa_477 c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [ 1e-05
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId: 562]} Length = 477 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: AMP nucleosidase
species: Escherichia coli [TaxId: 562]

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 17/128 (13%)

Query: 40  VGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHD--------R 91
           VG  +A  +    +  L+PD+ +  G  GG + +  +IGD  L       D         
Sbjct: 273 VGPSNAKTIC-DHLAVLRPDVWLMIGHCGGLR-ESQAIGDYVLAHAYLRDDHVLDAVLPP 330

Query: 92  RIPIP-VFDLYGVGQ---RQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSI---TAN 144
            IPIP + ++        +     P    +  L+   + T D  +   +   S      +
Sbjct: 331 DIPIPSIAEVQRALYDATKLVSGRPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLS 390

Query: 145 DATIKDME 152
            A   DME
Sbjct: 391 RAVAIDME 398

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query157
d1jysa_230 5'-Methylthioadenosine/S-Adenosylhomocysteine nucl 99.93
d1rxya_250 Uridine phosphorylase {Escherichia coli [TaxId: 56 99.92
d2ac7a1231 Purine nucleoside phosphorylase, PNP {Bacillus ant 99.92
d1je0a_234 5'-deoxy-5'-methylthioadenosine phosphorylase {Arc 99.91
d1vhwa_237 Purine nucleoside phosphorylase, PNP {Vibrio chole 99.91
d1ybfa_246 AMP nucleosidase {Bacteroides thetaiotaomicron [Ta 99.9
d1q1ga_243 Putative uridine phosphorylase {Plasmodium falcipa 99.89
d1odka_234 Purine nucleoside phosphorylase, PNP {Thermus ther 99.88
d1t8sa_477 AMP nucleosidase {Escherichia coli [TaxId: 562]} 99.87
d1vmka_265 Purine nucleoside phosphorylase, PNP {Thermotoga m 97.99
d1g2oa_262 Purine nucleoside phosphorylase, PNP {Mycobacteriu 97.84
d1qe5a_266 Purine nucleoside phosphorylase, PNP {Cellulomonas 97.79
d1cb0a_273 5'-deoxy-5'-methylthioadenosine phosphorylase {Hum 97.54
d1v4na_266 5'-deoxy-5'-methylthioadenosine phosphorylase {Sul 97.53
d3pnpa_284 Purine nucleoside phosphorylase, PNP {Cow (Bos tau 97.4
>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.9e-25  Score=170.15  Aligned_cols=138  Identities=25%  Similarity=0.347  Sum_probs=112.7

Q ss_pred             ccccceeEEEcCeeEEEE-------EEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecc
Q 031587           13 HTCTQQEYEIHDLFFANL-------NLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISD   85 (157)
Q Consensus        13 ~~~~~~~~~~~~~~f~~~-------~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~   85 (157)
                      ++...++...++++||.+       .+..+|   ||++|||.+++.|+.+|+|+.||++|+|||++ +++++||+|++++
T Consensus        19 ~l~~~~~~~~~~~~~~~g~~~g~~v~v~~~G---~G~~~aa~~~~~li~~~~~~~ii~~G~aG~l~-~~~~~Gdvvi~~~   94 (230)
T d1jysa_          19 KIENRQTISLGGCEIYTGQLNGTEVALLKSG---IGKVAAALGATLLLEHCKPDVIINTGSAGGLA-PTLKVGDIVVSDE   94 (230)
T ss_dssp             HCEEEEEEEETTEEEEEEEETTEEEEEEECC---SSHHHHHHHHHHHHHHHCCSEEEEEEEEEECS-TTCCTTCEEEEEE
T ss_pred             hcccCeEEEeCCeEEEEEEECCEEEEEEECC---CChhHHHHHHHHHHHhcCCcEEEEecccCCcc-ccccCCCEEEEeE
Confidence            444566778889988864       566666   99999999999999999999999999999999 8999999999999


Q ss_pred             eEEecCCCCccCccccCCCCCCCCC-----ChhHh---------hcCCceEEeEeecceeeCCHHHHHHHHh-C-CCcEE
Q 031587           86 VAFHDRRIPIPVFDLYGVGQRQAFS-----TPNLL---------RELNLKVCKLSTGDSLDMSSQDETSITA-N-DATIK  149 (157)
Q Consensus        86 ~~~~d~~~~~~~f~~~~~~~~p~~~-----~~~l~---------~~~~~~~G~i~S~d~fi~~~~~~~~l~~-~-~a~~v  149 (157)
                      ++++|.+.+  .+ .++.++.|..|     ++.|.         .+++++.|+++|+|.|+.+...+.+|++ + ++.++
T Consensus        95 ~~~~~~~~~--~~-~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~t~~~~~~~~~~~~~l~~~~~~a~~v  171 (230)
T d1jysa_          95 ARYHDADVT--AF-GYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAV  171 (230)
T ss_dssp             EEETTCBCG--GG-TCCTTCCTTSCSSEECCHHHHHHHHHHHHHTTCCEEEEEEEECSBCCCSHHHHHHHHHHCTTEEEE
T ss_pred             EEEeccccc--cc-ccccceeccceecccCCHHHHHHHHHHHHhcCCCeeEeEEeccCceeechHHHHHHHHhcccceee
Confidence            999987655  34 24555555443     23331         3678999999999999999988888875 5 99999


Q ss_pred             eccccccC
Q 031587          150 DMEVRAEF  157 (157)
Q Consensus       150 dME~aav~  157 (157)
                      |||+||++
T Consensus       172 dME~aa~a  179 (230)
T d1jysa_         172 EMEATAIA  179 (230)
T ss_dssp             ESSHHHHH
T ss_pred             echHHHHH
Confidence            99999873
>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1q1ga_ c.56.2.1 (A:) Putative uridine phosphorylase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cellulomonas sp. [TaxId: 40001]} Back     information, alignment and structure
>d1cb0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v4na_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure