Citrus Sinensis ID: 031595

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MLRGAKVGVSMEAIHVHCHRYCFLRKILSTCNHSKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSPLPCRT
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEEEEcccHHHHHHHHccccccccccccccccccccccccccccEHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccccEEEEEEEccEcccHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mlrgakvgvSMEAIHVHCHRYCFLRKILSTCnhskafnkqtthcrqkklsrrkpillstsidrgyltrtaaggvppppldltedNVRQVIADARGELAQLFDTSVGITGVAElaeldgpfvkirlrgrfwHKRSTVIARLANYLkqripvsplpcrt
Flexible Loop (DISEMBL)
mlrgakvgvsmeaIHVHCHRYCFLRKILSTCNHSKAfnkqtthcrqkklsrrkpillstsidrgyltrtaaggvppppldlTEDNVRQVIADARGELAQLFDTSVGITGVAelaeldgpfvkirlrgrfwhkRSTVIARLanylkqripvsplpcrt
Low Complexity Region (SEG)
MLRGAKVGVSMEAIHVHCHRYCFLRKILSTCNHSKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSPLPCRT
Disordered region (IsUnstruct)
******VGVSMEAIHVHCHRYCFLRKILSTCNHSKAFNKQTTHCRQ*****RKPILLSTSIDRGYLTRTAAGGV****LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIP********
Disordered Region (DISOPRED)
********VSMEAIHVHCHRYCFLRKILS************************************LTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSPLPC**
Disordered Region (DISEMBL)
********VSMEAIHVHCHRYCFLRKILSTCNHSKAF************SRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSPLPCRT
Disordered Region (DISPRO)
*LRGAKVGVSMEAIHVHCHRYCFLRKILSTCNHSKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSPLPC**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLRGAKVGVSMEAIHVHCHRYCFLRKILSTCNHSKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSPLPCRT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
351727260	161	uncharacterized protein LOC100305710 [Gl	0.726	0.708	0.584	1e-31
296085081	120	unnamed protein product [Vitis vinifera]	0.611	0.8	0.715	7e-31
225447436	127	PREDICTED: uncharacterized protein LOC10	0.611	0.755	0.715	8e-31
351727633	159	uncharacterized protein LOC100500460 [Gl	0.554	0.547	0.704	4e-30
358343531	153	hypothetical protein MTR_013s0001 [Medic	0.585	0.601	0.636	4e-30
388521729	158	unknown [Medicago truncatula]	0.464	0.462	0.821	6e-30
224053471	131	predicted protein [Populus trichocarpa]	0.617	0.740	0.644	8e-30
388490966	174	unknown [Lotus japonicus]	0.471	0.425	0.783	1e-29
297788659	166	hypothetical protein ARALYDRAFT_497470 [	0.885	0.837	0.486	2e-29
449437452	160	PREDICTED: uncharacterized protein LOC10	0.458	0.45	0.791	3e-27

>gi|351727260|ref|NP_001235619.1| uncharacterized protein LOC100305710 [Glycine max] gi|255626383|gb|ACU13536.1| unknown [Glycine max]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 91/125 (72%), Gaps = 11/125 (8%)

Query: 28  LSTCNH--SKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRTAAGGVP-PPPLDLTED 84
           LS  N+  +K  +K TT+   + L+R KP        R  + +  +  +P PPPLDLTE+
Sbjct: 25  LSITNYHAAKPLSKTTTYSPLQSLTRGKP--------RRRMLKPISAALPAPPPLDLTEN 76

Query: 85  NVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYL 144
           NV+QV+ DAR EL Q+FDTSVG+TGV ELA+LDGPFVKI L GRFWHKRSTV+AR+ANYL
Sbjct: 77  NVKQVLDDARKELGQIFDTSVGMTGVVELADLDGPFVKISLSGRFWHKRSTVLARVANYL 136

Query: 145 KQRIP 149
           KQRIP
Sbjct: 137 KQRIP 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085081|emb|CBI28496.3| unnamed protein product [Vitis vinifera]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 81/102 (79%), Gaps = 6/102 (5%)

Query: 48  KLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGI 107
           + SRR+P   ST++      R AA      PLDLTEDNVRQV+ADAR ELAQ+FD SVGI
Sbjct: 5   RWSRRRP---STAV---TTPRFAAVTASLSPLDLTEDNVRQVLADARVELAQIFDNSVGI 58

Query: 108 TGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIP 149
           TG AELAELDGPFVKI LRGRFWHKRSTV+AR+ANYLKQRIP
Sbjct: 59  TGEAELAELDGPFVKISLRGRFWHKRSTVLARVANYLKQRIP 100

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447436|ref|XP_002266103.1| PREDICTED: uncharacterized protein LOC100252893 [Vitis vinifera]

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 81/102 (79%), Gaps = 6/102 (5%)

Query: 48  KLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGI 107
           + SRR+P   ST++      R AA      PLDLTEDNVRQV+ADAR ELAQ+FD SVGI
Sbjct: 12  RWSRRRP---STAV---TTPRFAAVTASLSPLDLTEDNVRQVLADARVELAQIFDNSVGI 65

Query: 108 TGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIP 149
           TG AELAELDGPFVKI LRGRFWHKRSTV+AR+ANYLKQRIP
Sbjct: 66  TGEAELAELDGPFVKISLRGRFWHKRSTVLARVANYLKQRIP 107

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727633|ref|NP_001238447.1| uncharacterized protein LOC100500460 [Glycine max] gi|255630381|gb|ACU15547.1| unknown [Glycine max]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 63  RGYLTRTAAGGVP-PPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFV 121
           R  +++  +  +P PPPLDLTE+NV+QV+ DAR EL Q+FD+SVGITGV ELA+LDGPFV
Sbjct: 52  RRMISKPISAALPAPPPLDLTENNVKQVLEDARKELGQIFDSSVGITGVVELADLDGPFV 111

Query: 122 KIRLRGRFWHKRSTVIARLANYLKQRIP 149
           KI L+GRFWHKRSTV+AR+ANYLKQRIP
Sbjct: 112 KISLKGRFWHKRSTVLARVANYLKQRIP 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343531|ref|XP_003635854.1| hypothetical protein MTR_013s0001 [Medicago truncatula] gi|355501789|gb|AES82992.1| hypothetical protein MTR_013s0001 [Medicago truncatula]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 80/110 (72%), Gaps = 18/110 (16%)

Query: 41  TTHCRQKKLSRR-KPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQ 99
           TT C   KL R+ KP+  S S++              PPLDLTEDNVRQ + DARGEL Q
Sbjct: 16  TTRC---KLHRKLKPLSASLSVE--------------PPLDLTEDNVRQALVDARGELGQ 58

Query: 100 LFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIP 149
           +FDTSVG+TGV EL ELDGP+V I L+GRFWHKRSTV+ARLANYLKQRIP
Sbjct: 59  IFDTSVGMTGVVELVELDGPYVTISLKGRFWHKRSTVLARLANYLKQRIP 108

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521729|gb|AFK48926.1| unknown [Medicago truncatula]

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/73 (82%), Positives = 66/73 (90%)

Query: 77  PPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTV 136
           PPLDLTEDNVRQ + DARGEL Q+FDTSVG+TGV EL ELDGP+V I L+GRFWHKRSTV
Sbjct: 66  PPLDLTEDNVRQALVDARGELGQIFDTSVGMTGVVELVELDGPYVTISLKGRFWHKRSTV 125

Query: 137 IARLANYLKQRIP 149
           +ARLANYLKQRIP
Sbjct: 126 LARLANYLKQRIP 138

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053471|ref|XP_002297831.1| predicted protein [Populus trichocarpa] gi|222845089|gb|EEE82636.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 77/104 (74%), Gaps = 7/104 (6%)

Query: 46  QKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSV 105
           Q +   RKP  L+T          AA GVP PPLDLTE+NV+QV+ DAR EL Q+FDTSV
Sbjct: 15  QVQRPNRKPSPLTT-------ITAAAAGVPLPPLDLTEENVKQVLVDARAELGQIFDTSV 67

Query: 106 GITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIP 149
           GITG  ELAELDGPFV I L+GRFWH+RS V+AR+ NYLKQRIP
Sbjct: 68  GITGQVELAELDGPFVVISLKGRFWHERSMVVARIGNYLKQRIP 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490966|gb|AFK33549.1| unknown [Lotus japonicus]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 67/74 (90%)

Query: 76  PPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRST 135
           PPPLDLTE NV+QV+ADARGE  Q+FDTS G+TG+ ELAELDGPFVKI L+GRFWH+RS 
Sbjct: 81  PPPLDLTESNVKQVLADARGEFGQIFDTSAGMTGIVELAELDGPFVKISLKGRFWHERSM 140

Query: 136 VIARLANYLKQRIP 149
           V+AR+ANYLKQRIP
Sbjct: 141 VLARIANYLKQRIP 154

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297788659|ref|XP_002862394.1| hypothetical protein ARALYDRAFT_497470 [Arabidopsis lyrata subsp. lyrata] gi|297823099|ref|XP_002879432.1| hypothetical protein ARALYDRAFT_482253 [Arabidopsis lyrata subsp. lyrata] gi|297307867|gb|EFH38652.1| hypothetical protein ARALYDRAFT_497470 [Arabidopsis lyrata subsp. lyrata] gi|297325271|gb|EFH55691.1| hypothetical protein ARALYDRAFT_482253 [Arabidopsis lyrata subsp. lyrata]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/146 (48%), Positives = 88/146 (60%), Gaps = 7/146 (4%)

Query: 11  MEAIHVHCHRYCFLRKILSTCNHSKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRT- 69
           ME + +  H    L K           N+     R   +  RKP+ L T + +    RT 
Sbjct: 1   MELVALPIHHRTGLSKFPPLKTGYPLVNRIGLALRFSNVRMRKPVYLGTILTKKSRARTL 60

Query: 70  ------AAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKI 123
                 + GGV  PPLDLTEDN+  V+++AR ELAQLFD+SVGITG  EL ELDGPFVKI
Sbjct: 61  TTTEAVSGGGVSLPPLDLTEDNIHLVLSEARIELAQLFDSSVGITGQVELVELDGPFVKI 120

Query: 124 RLRGRFWHKRSTVIARLANYLKQRIP 149
            LRG+FWH R+ V+AR+ NYLKQRIP
Sbjct: 121 SLRGKFWHTRAMVLARIGNYLKQRIP 146

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437452|ref|XP_004136506.1| PREDICTED: uncharacterized protein LOC101205788 [Cucumis sativus] gi|449515133|ref|XP_004164604.1| PREDICTED: uncharacterized protein LOC101226086 [Cucumis sativus]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/72 (79%), Positives = 64/72 (88%)

Query: 78  PLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVI 137
           PLDLTE+NVRQ + +AR ELAQ+FD SVGITGV ELAELDGPFVKI L+GRFWHKRSTV+
Sbjct: 69  PLDLTEENVRQALGEARVELAQIFDDSVGITGVVELAELDGPFVKISLKGRFWHKRSTVV 128

Query: 138 ARLANYLKQRIP 149
           AR+ NYLK RIP
Sbjct: 129 ARVGNYLKNRIP 140

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2046510	166	AT2G33180 "AT2G33180" [Arabido	0.668	0.632	0.571	1.5e-26

TAIR|locus:2046510 AT2G33180 "AT2G33180" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 64/112 (57%), Positives = 75/112 (66%)

Query:    45 RQKKLSRRKPILLSTSIDRGYLTRT-------AAGGVPPPPLDLTEDNVRQVIADARGEL 97
             R   +  RKP  L T +      RT       +  GV  PPLDLTEDN+  V+++AR EL
Sbjct:    35 RFSNVRMRKPAYLGTILSEKSRARTLTTAEAVSGSGVSLPPLDLTEDNIHLVLSEARIEL 94

Query:    98 AQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIP 149
             AQLFD+SVGITG  EL ELDGPFV I LRG+FWH R+ V+ARL NYLKQRIP
Sbjct:    95 AQLFDSSVGITGQVELVELDGPFVTISLRGKFWHTRAMVLARLGNYLKQRIP 146


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.138   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      157       157   0.00079  106 3  11 22  0.43    31
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  136 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.11u 0.14s 16.25t   Elapsed:  00:00:00
  Total cpu time:  16.11u 0.14s 16.25t   Elapsed:  00:00:00
  Start:  Mon May 20 22:20:33 2013   End:  Mon May 20 22:20:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0008006901 hypothetical protein (132 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	99.81
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	99.76
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.74
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.72
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	99.65
KOG2358	213	consensus NifU-like domain-containing proteins [Po	98.91
KOG2358	213	consensus NifU-like domain-containing proteins [Po	98.66
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	95.77
TIGR02945	99	SUF_assoc FeS assembly SUF system protein. Members	90.71

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=99.81  E-value=8.7e-20  Score=125.64  Aligned_cols=60  Identities=25%  Similarity=0.343  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc---chhhHHHHHHHHHHhhCCcCc
Q 031595           86 VRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH---KRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        86 VE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      |+++|++|||+|++       |||||||+++|++.|+|||+|+|.+   +.+|++.+||+.|++++||+.
T Consensus         1 V~~~l~~IrP~L~~-------dGGdv~lv~v~~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~   63 (68)
T PF01106_consen    1 VEEVLEEIRPYLQS-------DGGDVELVDVDDGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVK   63 (68)
T ss_dssp             HHHHHHHCHHHHHH-------TTEEEEEEEEETTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-S
T ss_pred             CHHHHHHhChHHHh-------cCCcEEEEEecCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCc
Confidence            78999999999996       6999999999999999999999999   799999999999999999975

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=7e-19  Score=129.97  Aligned_cols=64  Identities=28%  Similarity=0.330  Sum_probs=60.0

Q ss_pred             chHHHHHHHH-HHHHHHHhhhccccccccceEEEEec--CCeEEEEEeeccCc---chhhHHHHHHHHHHhhCCcCc
Q 031595           82 TEDNVRQVIA-DARGELAQLFDTSVGITGVAELAELD--GPFVKIRLRGRFWH---KRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        82 teENVE~vLd-eiRP~L~a~fD~sVGdGGdVELVeID--GpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      ..|+|+++|+ +|||+|++       |||||||++||  +++|+|||.|||.+   +.+|+|++||+.||++|||+.
T Consensus        10 ~~e~v~~~l~~~irP~l~~-------dGGdve~~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~   79 (93)
T COG0694          10 LLERVEEVLDEKIRPQLAM-------DGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVK   79 (93)
T ss_pred             HHHHHHHHHHhccCcceec-------cCCeEEEEEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccc
Confidence            3679999999 99999986       79999999999  78999999999999   799999999999999999975

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.74  E-value=5.5e-18  Score=135.85  Aligned_cols=67  Identities=18%  Similarity=0.203  Sum_probs=61.2

Q ss_pred             cccchHHHHHHHH-HHHHHHHhhhccccccccceEEEEec-CCeEEEEEeeccCc---chhhHHHHHHHHHHhhCCcCc
Q 031595           79 LDLTEDNVRQVIA-DARGELAQLFDTSVGITGVAELAELD-GPFVKIRLRGRFWH---KRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        79 LeLteENVE~vLd-eiRP~L~a~fD~sVGdGGdVELVeID-GpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      -+-..+.|+++|+ +|||+|++       ||||||||+|+ +++|+|||+|+|.+   +.+|||.+||+.||+++|||.
T Consensus       103 ~~~~~~~i~~~l~~~irP~l~~-------dGGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~  174 (190)
T TIGR03341       103 DAPLEERINYVLQSEINPQLAS-------HGGKVTLVEITDDGVAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELK  174 (190)
T ss_pred             chHHHHHHHHHHHhccCHHHHh-------cCCceEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcc
Confidence            3335889999998 79999996       69999999998 67999999999999   799999999999999999985

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.72  E-value=9.7e-18  Score=135.00  Aligned_cols=64  Identities=17%  Similarity=0.204  Sum_probs=59.6

Q ss_pred             chHHHHHHHH-HHHHHHHhhhccccccccceEEEEec-CCeEEEEEeeccCc---chhhHHHHHHHHHHhhCC-cCc
Q 031595           82 TEDNVRQVIA-DARGELAQLFDTSVGITGVAELAELD-GPFVKIRLRGRFWH---KRSTVIARLANYLKQRIP-VSP  152 (157)
Q Consensus        82 teENVE~vLd-eiRP~L~a~fD~sVGdGGdVELVeID-GpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IP-EI~  152 (157)
                      ..+.|+++|+ +|||+|++       ||||||||+|| +++|+|||+|+|.+   +.+|||++||+.||+++| ||+
T Consensus       107 ~~~~i~~~l~~~irP~l~~-------dGGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~  176 (192)
T PRK11190        107 LMERVEYVLQSQINPQLAG-------HGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELK  176 (192)
T ss_pred             HHHHHHHHHHhccChhHHh-------cCCcEEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhc
Confidence            5788999997 99999996       69999999998 57999999999999   799999999999999999 874

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=99.65  E-value=2.1e-16  Score=133.58  Aligned_cols=62  Identities=23%  Similarity=0.285  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc---chhhHHHHHHHHHHhhCCcCc
Q 031595           83 EDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH---KRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        83 eENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      .+.|+++|++|||+|++       ||||||||+|+|++|+|||+|+|.+   +.+||+. ||+.||+.+|||.
T Consensus       221 ~~~v~~~l~~irP~l~~-------dGGdv~lv~v~~~~v~v~l~GaC~gC~~s~~Tl~~-Ie~~l~~~~p~~~  285 (290)
T TIGR02000       221 IQLIQKVLEEVRPVLQA-------DGGDVELYDVDGKIVYVVLTGACSGCSMSTMTLKG-IQQRLRERLGEFV  285 (290)
T ss_pred             HHHHHHHHHHhCchHhh-------cCCcEEEEEEeCCEEEEEEeeCCCCCcchHHHHHH-HHHHHHHhCCCce
Confidence            57899999999999996       6999999999999999999999999   7999999 9999999999985

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

>KOG2358 consensus NifU-like domain-containing proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=4.5e-10  Score=94.05  Aligned_cols=70  Identities=14%  Similarity=0.151  Sum_probs=61.5

Q ss_pred             CCcccchHHHHHHHHHHHHHHHhhhccccccccceEEEEecC--CeEEEEEeeccCc---chhhHHHHHHHHHHhhCCcC
Q 031595           77 PPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDG--PFVKIRLRGRFWH---KRSTVIARLANYLKQRIPVS  151 (157)
Q Consensus        77 ~~LeLteENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDG--pvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPEI  151 (157)
                      +.-+.+.-+.|-+...|||.++.       ||||+++++.|+  ++|++||||+|.+   +..|+|+|||+-|+.++||+
T Consensus       120 ~d~e~t~~ikelietRiRp~i~e-------dggdi~y~g~e~g~g~v~lklqgact~cpss~vtlk~Gie~mL~~y~~eV  192 (213)
T KOG2358|consen  120 SDPESTMTIKELIETRIRPKIQE-------DGGDEDYVGFETGLGLVSLKLQGACTECPSSLVTLKNGIENMLEIYVPEV  192 (213)
T ss_pred             CChhHHHHHHHHHHHhhhhhhhc-------cCCceeeccccCccchHHHHHhhhhccCCcccchhhhhHHHHHHhhccee
Confidence            33455666788888899999996       799999999996  6999999999999   68899999999999999998


Q ss_pred             cC
Q 031595          152 PL  153 (157)
Q Consensus       152 ~~  153 (157)
                      +-
T Consensus       193 K~  194 (213)
T KOG2358|consen  193 KG  194 (213)
T ss_pred             eE
Confidence            63

>KOG2358 consensus NifU-like domain-containing proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=9.7e-09  Score=86.12  Aligned_cols=68  Identities=24%  Similarity=0.290  Sum_probs=63.4

Q ss_pred             CcccchHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc---chhhHHHHHHHHHHhhCCcCc
Q 031595           78 PLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH---KRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        78 ~LeLteENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      -+.+++||++.+|+..||+|++       |+|++-+-.|+|.++.++++|+|..   .+||+|++||.+|+..|||+-
T Consensus        74 v~k~~ee~~w~~L~p~i~~~~s-------d~g~~g~pli~g~~~~~~~~~~~e~d~e~t~~ikelietRiRp~i~edg  144 (213)
T KOG2358|consen   74 VTKLTEENVWSVLDPEIPSLMS-------DGGNVGLPLIDGNIVVLKLQGACESDPESTMTIKELIETRIRPKIQEDG  144 (213)
T ss_pred             EeccchhhhHhhhchhhHHHHh-------ccccccchhhccchhhhhhcccccCChhHHHHHHHHHHHhhhhhhhccC
Confidence            3567999999999999999996       6999999999999999999999998   799999999999999999974

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=95.77  E-value=0.024  Score=37.76  Aligned_cols=65  Identities=17%  Similarity=0.196  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHH-HHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc--chhhHHHHHHHHHHhhCCcCc
Q 031595           83 EDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH--KRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        83 eENVE~vLdei-RP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~--s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      ++.|.++|..+ =|+++    .++-+-|-|+=++|+|+.|.|.|+=.+.+  ....++..|+..|+ .+|++.
T Consensus         1 k~~V~~aL~~v~dP~~~----~~iv~~g~V~~i~i~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~-~l~gv~   68 (72)
T PF01883_consen    1 KQAVRDALKQVKDPELG----KDIVELGMVRDISIEGGKVSVSLELPTPACPAAEPLREEIREALK-ALPGVK   68 (72)
T ss_dssp             HHHHHHHHTT-BETTTS----SBTTTTTSEEEEEECTCEEEEEE--SSTTHTTHHHHHHHHHHHHH-TSTT-S
T ss_pred             CHHHHHHHhCCCCCCCC----CCHHHcCCeeEEEEECCEEEEEEEECCCCchHHHHHHHHHHHHHH-hCCCCc
Confidence            35566666655 35554    23555799999999999999999988766  46788999999999 888753

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>TIGR02945 SUF_assoc FeS assembly SUF system protein

Probab=90.71  E-value=0.61  Score=32.86  Aligned_cols=63  Identities=14%  Similarity=0.169  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHH-HHHHhhhccccccccceEEEEecC-CeEEEEEeeccCc--chhhHHHHHHHHHHhhCCcC
Q 031595           84 DNVRQVIADAR-GELAQLFDTSVGITGVAELAELDG-PFVKIRLRGRFWH--KRSTVIARLANYLKQRIPVS  151 (157)
Q Consensus        84 ENVE~vLdeiR-P~L~a~fD~sVGdGGdVELVeIDG-pvVkVrL~GaC~~--s~mTvk~gVe~~LKe~IPEI  151 (157)
                      ++|.++|+.+. |+++    .++..-|.|.=++++| +.|.+.|.-.+.+  ....++..++..|.+ +|.+
T Consensus         4 ~~I~~~L~~v~dP~l~----~~lv~~g~V~~i~v~~~~~v~i~l~l~~p~~~~~~~l~~~i~~al~~-l~gv   70 (99)
T TIGR02945         4 DAVIEALKTVYDPEIP----VNIYELGLIYDIDVDDDGHVDIQMTLTAPNCPVAGSMPGEVENAVRA-VPGV   70 (99)
T ss_pred             HHHHHHHcCCCCCCCC----CCeecCCCeeEEEECCCCeEEEEEEECCCCCChHHHHHHHHHHHHHh-CCCC
Confidence            45555555552 3332    3566678998899985 8888888775554  566788888888865 5554

Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	5e-09

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1 Length = 74

 Score = 49.2 bits (118), Expect = 5e-09
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 79  LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIA 138
           L+L E+NV +V+ + R  LA     + G  G  +   + GP VK+RL G       TV  
Sbjct: 2   LELNEENVEKVLNEIRPYLAG----TGG--GGLQFLMIKGPIVKVRLTGPAAV-VRTVRI 54

Query: 139 RLANYLKQRIP 149
            ++  L+++IP
Sbjct: 55  AVSKKLREKIP 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	99.89
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	99.88
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	99.86
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	99.85
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	99.83
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	97.0
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	96.35
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	95.82

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1

Probab=99.89  E-value=2.7e-24  Score=150.94  Aligned_cols=66  Identities=33%  Similarity=0.491  Sum_probs=62.9

Q ss_pred             cccchHHHHHHHHHHHHHHHhhhccccccc-cceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhhCCcCc
Q 031595           79 LDLTEDNVRQVIADARGELAQLFDTSVGIT-GVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        79 LeLteENVE~vLdeiRP~L~a~fD~sVGdG-GdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      |++++++|+++|++|||+|++       || |||||++||+++|+|||+|+|.++ +|+|++||+.||+++|||.
T Consensus         2 ~~~~~~~V~~~L~~iRP~L~~-------dGGGdvelv~v~~g~V~v~l~GaC~gc-~Tlk~gIe~~L~~~vpei~   68 (74)
T 1th5_A            2 LELNEENVEKVLNEIRPYLAG-------TGGGGLQFLMIKGPIVKVRLTGPAAVV-RTVRIAVSKKLREKIPSIQ   68 (74)
T ss_dssp             CCCSHHHHHHHHTTTHHHHTT-------TTCCCCCCCEEETTEEEECCCSSSSSS-SSHHHHHHHHHHHHCTTCS
T ss_pred             hhHHHHHHHHHHHHHhHHHHh-------cCCCcEEEEEEeCCEEEEEEecCCcch-HHHHHHHHHHHHHHCCCCc
Confidence            678999999999999999995       69 999999999999999999999996 9999999999999999985

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=99.88  E-value=8.8e-23  Score=147.33  Aligned_cols=64  Identities=25%  Similarity=0.284  Sum_probs=61.0

Q ss_pred             chHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc---chhhHHHHHHHHHHhhCCcCc
Q 031595           82 TEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH---KRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        82 teENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      ..++|+++|++|||+|++       |||||||+++|+++|+|||+|+|.+   +.+|||++||+.||+++|||.
T Consensus         8 ~~~~I~~~L~~IRP~L~~-------dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~   74 (88)
T 1xhj_A            8 MFDQVAEVIERLRPFLLR-------DGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVI   74 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHHhcHHHHh-------cCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCce
Confidence            478999999999999996       6999999999999999999999999   799999999999999999986

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=99.86  E-value=4.3e-22  Score=154.90  Aligned_cols=70  Identities=30%  Similarity=0.479  Sum_probs=64.9

Q ss_pred             CCCcccchHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhhCCcCc
Q 031595           76 PPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        76 ~~~LeLteENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      .+.+++++|+|+++||+|||||++  +    ||||||||+|||++|+|||+|+|++ .||+|++||+.||+++|||+
T Consensus        80 ~e~l~L~~~~v~~~L~~iRP~L~~--~----dGGdvelv~v~~~~v~v~l~Gac~~-~~Tlk~~Ie~~l~e~vP~i~  149 (154)
T 2z51_A           80 ETGLELNEENIEKVLEEIRPYLIG--T----ADGSLDLVEIEDPIVKIRITGPAAG-VMTVRVAVTQKLREKIPSIA  149 (154)
T ss_dssp             CCSCCSSHHHHHHHHHHHGGGCCG--G----GCCEEEEEEEETTEEEEEEESGGGG-CHHHHHHHHHHHHHHCTTCC
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhh--c----CCCCeEEEEEECCEEEEEEecCCcc-cHhHHHHHHHHHHHHCCCcc
Confidence            456899999999999999999983  2    4999999999999999999999999 69999999999999999986

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=99.85  E-value=1.9e-21  Score=151.24  Aligned_cols=67  Identities=30%  Similarity=0.422  Sum_probs=63.5

Q ss_pred             cccchHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc---chhhHHHHHHHHHHhhCCcCc
Q 031595           79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH---KRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        79 LeLteENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      |++++|+|+++|++|||+|++       |||||||+++||++|+|||+|+|.+   +.+|+|++||+.||+++|||.
T Consensus         2 ~~~~~e~v~~~L~~iRP~l~~-------dGGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~   71 (154)
T 2z51_A            2 VPLTEENVESVLDEIRPYLMS-------DGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIV   71 (154)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHH-------TTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             CcchHHHHHHHHHHhChHHHh-------cCCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCce
Confidence            578999999999999999996       6999999999999999999999998   689999999999999999984

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=99.83  E-value=6.4e-21  Score=138.36  Aligned_cols=66  Identities=17%  Similarity=0.237  Sum_probs=61.2

Q ss_pred             ccchHHHHHHHHH-HHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc---chhhHHHHHHHHHHhhCCcCc
Q 031595           80 DLTEDNVRQVIAD-ARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH---KRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        80 eLteENVE~vLde-iRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      +-..+.|+++|++ |||+|++       |||||||+++|+++|+|||+|+|.+   +.+|||++||+.||+++|||.
T Consensus        12 ~~~~~~I~~~L~~~IRP~L~~-------dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~   81 (92)
T 1veh_A           12 DEVVAMIKELLDTRIRPTVQE-------DGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVE   81 (92)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHH-------HSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCC
T ss_pred             hHHHHHHHHHHHHHhhHHHHh-------cCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCC
Confidence            3356789999997 9999996       6999999999999999999999999   799999999999999999985

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=97.00  E-value=0.00061  Score=47.83  Aligned_cols=67  Identities=15%  Similarity=0.081  Sum_probs=54.1

Q ss_pred             cchHHHHHHHHHH-HHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc--chhhHHHHHHHHHHhhCCcCc
Q 031595           81 LTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH--KRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        81 LteENVE~vLdei-RP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~--s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      .++|.|.++|..+ -|+|+.    ++-+-|-|.=|+++|+.|+|.|+-.+.+  ...+++..|++.|+ .+|++.
T Consensus         6 ~~~~~V~~aL~~V~DPel~~----~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~   75 (103)
T 3cq1_A            6 PLEAQAWALLEAVYDPELGL----DVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALS-RLPGVE   75 (103)
T ss_dssp             HHHHHHHHHHTTCBCTTTCS----BTTTTTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHH-TSTTCC
T ss_pred             hHHHHHHHHHhCCCCCCCCc----CchhcCceEEEEEECCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCce
Confidence            4678888888886 688873    3555699999999988999999999887  47789999999997 566653

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=96.35  E-value=0.0029  Score=44.18  Aligned_cols=67  Identities=16%  Similarity=0.131  Sum_probs=53.5

Q ss_pred             cchHHHHHHHHHHH-HHHHhhhccccccccceEEEEecC-CeEEEEEeeccCc--chhhHHHHHHHHHHhhCCcCc
Q 031595           81 LTEDNVRQVIADAR-GELAQLFDTSVGITGVAELAELDG-PFVKIRLRGRFWH--KRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        81 LteENVE~vLdeiR-P~L~a~fD~sVGdGGdVELVeIDG-pvVkVrL~GaC~~--s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      ++++.|.++|..+. |++..    ++-+-|-|.=|+++| +.|+|.|+-.+.+  ....++..|++.|+ .+|++.
T Consensus         6 ~~~~~V~~aL~~V~DPel~~----~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~   76 (103)
T 1uwd_A            6 VTKEDVLNALKNVIDFELGL----DVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIK-KIEGVN   76 (103)
T ss_dssp             CCHHHHHHHHTTCBCTTTSS----BTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHH-TSSSCC
T ss_pred             chHHHHHHHHcCCCCCCCCc----ChhhcCCeeEEEEcCCCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCcc
Confidence            67889999999986 88873    355568898899985 8999999988877  47788999999997 466653

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=95.82  E-value=0.0041  Score=44.23  Aligned_cols=68  Identities=12%  Similarity=0.096  Sum_probs=50.9

Q ss_pred             cchHHHHHHHHHH-HHHHHhhhccccccccceEEEEecC-CeEEEEEeeccCc--chhhHHHHHHHHHHhhCCcCc
Q 031595           81 LTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDG-PFVKIRLRGRFWH--KRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        81 LteENVE~vLdei-RP~L~a~fD~sVGdGGdVELVeIDG-pvVkVrL~GaC~~--s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      .+++.|.++|..+ -|++.    .++.+-|-|.=|+|+| +.|+|.|+=.+-+  ....++..|++.|++.+|++.
T Consensus         8 ~~~~~V~~aL~~V~DPe~~----~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~   79 (108)
T 3lno_A            8 AFENKLYANLEAVIDPELG----VDIVNLGLVYDVTADENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVN   79 (108)
T ss_dssp             HHHHHHHHHGGGCEETTTT----EEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCC
T ss_pred             hhHHHHHHHHcCCCCCCCC----CCHHHcCCceEEEECCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCc
Confidence            4566666666665 56654    2355579999999985 8999999887766  466889999999977788874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d1th5a1	73	d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {	5e-08

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 45.5 bits (108), Expect = 5e-08
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 79  LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIA 138
           L+L E+NV +V+ + R  LA          G  +   + GP VK+RL G       TV  
Sbjct: 1   LELNEENVEKVLNEIRPYLAGTGG------GGLQFLMIKGPIVKVRLTGPAAV-VRTVRI 53

Query: 139 RLANYLKQRIP 149
            ++  L+++IP
Sbjct: 54  AVSKKLREKIP 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1th5a1	73	NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [	99.91
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	99.85
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	99.8
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	84.97

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.91  E-value=7.2e-26  Score=156.91  Aligned_cols=67  Identities=33%  Similarity=0.454  Sum_probs=63.4

Q ss_pred             cccchHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhhCCcCc
Q 031595           79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        79 LeLteENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      |+|++|+|+++|+++||||++ .     |||||||++|||++|+|||+|+|+|+ +|+|.+||++||++||||.
T Consensus         1 mel~ee~V~~vL~eirP~l~a-~-----dGGdvelv~i~~~~v~v~l~GaC~gC-~Tl~~gIe~~L~~~iPei~   67 (73)
T d1th5a1           1 LELNEENVEKVLNEIRPYLAG-T-----GGGGLQFLMIKGPIVKVRLTGPAAVV-RTVRIAVSKKLREKIPSIQ   67 (73)
T ss_dssp             CCCSHHHHHHHHTTTHHHHTT-T-----TCCCCCCCEEETTEEEECCCSSSSSS-SSHHHHHHHHHHHHCTTCS
T ss_pred             CCCCHHHHHHHHHHhcccccc-c-----CCceEEEEEecCCEEEEEecCCCccc-chHHHHHHHHHHHHCCCcc
Confidence            789999999999999999973 2     59999999999999999999999997 8999999999999999986

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=99.85  E-value=1.3e-21  Score=139.31  Aligned_cols=64  Identities=25%  Similarity=0.284  Sum_probs=60.8

Q ss_pred             chHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc---chhhHHHHHHHHHHhhCCcCc
Q 031595           82 TEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH---KRSTVIARLANYLKQRIPVSP  152 (157)
Q Consensus        82 teENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPEI~  152 (157)
                      ..++|+++|++|||+|++       |||+|||+++++++|+|||+|+|.+   +.+|+|++||+.||+++|||.
T Consensus         8 l~~~I~~vLe~IRP~l~~-------dGGdvelv~v~~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~   74 (88)
T d1xhja_           8 MFDQVAEVIERLRPFLLR-------DGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVI   74 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHHhhHHHHh-------CCCcEEEEeccCCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCc
Confidence            478999999999999996       6999999999999999999999999   799999999999999999985

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.8e-20  Score=134.30  Aligned_cols=73  Identities=15%  Similarity=0.183  Sum_probs=64.5

Q ss_pred             CCCCCCcccchHHHHHHHHH-HHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc---chhhHHHHHHHHHHhhC
Q 031595           73 GVPPPPLDLTEDNVRQVIAD-ARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH---KRSTVIARLANYLKQRI  148 (157)
Q Consensus        73 ~~~~~~LeLteENVE~vLde-iRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~I  148 (157)
                      .+..+.-+-..++|+++|++ |||+|++       |||+|+|+++++++|+|+|+|+|.+   +.||||.+||+.||+++
T Consensus         5 e~~~~~d~e~~~~I~~vL~~~IrP~l~~-------dGGdv~lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~v   77 (92)
T d1veha_           5 SSGSEEDDEVVAMIKELLDTRIRPTVQE-------DGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYI   77 (92)
T ss_dssp             CSSCSSCCHHHHHHHHHHHHTTHHHHHH-------HSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHC
T ss_pred             CCCCCccHHHHHHHHHHHHHhcChHHHH-------cCCceEEEEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHHHC
Confidence            33344455567789999986 9999996       6999999999999999999999999   79999999999999999


Q ss_pred             CcCc
Q 031595          149 PVSP  152 (157)
Q Consensus       149 PEI~  152 (157)
                      |||+
T Consensus        78 pev~   81 (92)
T d1veha_          78 PEVE   81 (92)
T ss_dssp             SSCC
T ss_pred             CCcc
Confidence            9986

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=84.97  E-value=0.39  Score=32.70  Aligned_cols=67  Identities=18%  Similarity=0.184  Sum_probs=50.1

Q ss_pred             ccchHHHHHHHHHH-HHHHHhhhccccccccceEEEEecC-CeEEEEEeeccCcc--hhhHHHHHHHHHHhhCCcC
Q 031595           80 DLTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDG-PFVKIRLRGRFWHK--RSTVIARLANYLKQRIPVS  151 (157)
Q Consensus        80 eLteENVE~vLdei-RP~L~a~fD~sVGdGGdVELVeIDG-pvVkVrL~GaC~~s--~mTvk~gVe~~LKe~IPEI  151 (157)
                      ++|+|.|.++|..+ =|++.  -|  +=+=|-|.=|+|+| +.|+|.++=.+-++  .-.++..+++.|+ .+|.|
T Consensus         4 ~vt~~~V~~aL~~V~DPe~~--~d--IV~LGlV~~i~I~~~g~V~v~~~lt~~~Cp~~~~i~~~i~~al~-~~~gV   74 (102)
T d1uwda_           4 KVTKEDVLNALKNVIDFELG--LD--VVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIK-KIEGV   74 (102)
T ss_dssp             CCCHHHHHHHHTTCBCTTTS--SB--TTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHH-TSSSC
T ss_pred             ccCHHHHHHHHhCCCCCCCC--cc--eeeccceeeEEeccccceEEEEecCCCCCchHHHHHHHHHHHHH-cCCCC
Confidence            57899999998887 67775  22  33347777788986 68999988666663  6678888999998 46665