Citrus Sinensis ID: 031607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPGS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHccc
Coil and Loop (DISEMBL)
mdmdidqtikdkdlfkaaetgdsstfksLSKQQLLKSLslrndddrTLLHVAASCGHPEVVEILLSVDesanvvnavdeegwapihsaasiGNVTIVEMLLSkgadvnlkndggrtALHYAASKGWLKIVELLISRGakinskdkacwlhsiapgs
Flexible Loop (DISEMBL)
mdmdidqtikdkdlfkaaetgdsstfkslskQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAkinskdkacwlhsiapgs
Low Complexity Region (SEG)
MDMDIDQTIKDKDLFKAAETGDSSTFkslskqqllkslslRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPGS
Disordered region (IsUnstruct)
*********************************************RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHS*****
Disordered Region (DISOPRED)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG*
Disordered Region (DISEMBL)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPGS
Disordered Region (DISPRO)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPGS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
O75832	226	26S proteasome non-ATPase	no	no	0.737	0.508	0.479	2e-18
Q9Z2X3	231	26S proteasome non-ATPase	yes	no	0.679	0.458	0.5	2e-18
Q9Z2X2	231	26S proteasome non-ATPase	no	no	0.711	0.480	0.487	3e-18
Q54HW1	232	26S proteasome non-ATPase	yes	no	0.839	0.564	0.414	4e-17
Q7TQP6	835	Serine/threonine-protein	no	no	0.608	0.113	0.42	4e-14
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.782	0.103	0.385	1e-13
Q5GIG6	834	Serine/threonine-protein	no	no	0.608	0.113	0.424	1e-13
Q1RMI3	383	GA-binding protein subuni	no	no	0.615	0.250	0.434	2e-13
Q06547	395	GA-binding protein subuni	no	no	0.615	0.243	0.434	2e-13
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.660	0.052	0.353	2e-13

>sp|O75832|PSD10_HUMAN 26S proteasome non-ATPase regulatory subunit 10 OS=Homo sapiens GN=PSMD10 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 72/121 (59%), Gaps = 6/121 (4%)

Query: 36  KSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94
           KSL+ R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G  
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRD 86

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--KACWLHSI 152
            IV+ LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD  +A  +H  
Sbjct: 87  EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 146

Query: 153 A 153
           A
Sbjct: 147 A 147

Acts as an proto-oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.
Homo sapiens (taxid: 9606)

>sp|Q9Z2X3|PSD10_RAT 26S proteasome non-ATPase regulatory subunit 10 OS=Rattus norvegicus GN=Psmd10 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 68/110 (61%), Gaps = 4/110 (3%)

Query: 36  KSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94
           KSL+ R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G  
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNEKDDAGWSPLHIAASAGRD 86

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            IV+ LL KGA VN  N  G TALHYAASK   +I  +L+  GA  ++K+
Sbjct: 87  EIVKALLIKGAQVNAVNQNGCTALHYAASKNRHEIAVMLLEGGANPDAKN 136

Acts as an oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z2X2|PSD10_MOUSE 26S proteasome non-ATPase regulatory subunit 10 OS=Mus musculus GN=Psmd10 PE=1 SV=3

 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 31  KQQLL--KSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           K+++L  KSL+ R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H 
Sbjct: 23  KERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHI 79

Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           AAS G   IV+ LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct: 80  AASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

Acts as an oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Mus musculus (taxid: 10090)

>sp|Q54HW1|PSD10_DICDI 26S proteasome non-ATPase regulatory subunit 10 OS=Dictyostelium discoideum GN=psmD10 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 4/135 (2%)

Query: 10  KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDE 69
           K+ DL +  + G     K L + Q +K+   +++D+RT LH AA+ G   V + L+  D 
Sbjct: 12  KEDDLLEFVKVGKLLEVKDLIENQGVKA-DCKDEDERTPLHWAAAKGQISVAQYLM--DN 68

Query: 70  SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
                N  D+ GW P+ SA S G+  +V++LL  GAD N  ND  RT LHYA+SKG   I
Sbjct: 69  CKCSPNTNDDGGWTPLTSATSAGHTHMVKLLLEFGADPNTVNDSKRTPLHYASSKGRSDI 128

Query: 130 VELLISRGAKINSKD 144
           V+LL++ GAK N KD
Sbjct: 129 VDLLLTHGAK-NRKD 142

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC).

Dictyostelium discoideum (taxid: 44689)

>sp|Q7TQP6|TNI3K_RAT Serine/threonine-protein kinase TNNI3K OS=Rattus norvegicus GN=Tnni3k PE=2 SV=3

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GHPE  E+LL    + NV +AV    + P+H AA  G+  +  +LL  GAD
Sbjct: 136 TALHIAAIAGHPEAAEVLLQHGANVNVQDAV---FFTPLHIAAYYGHEQVTSVLLKFGAD 192

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAK--INSKD 144
           VN+  + G   LH A++KG+  IV+LL+  G+K  +N++D
Sbjct: 193 VNVSGEVGDRPLHLASAKGFFNIVKLLVEEGSKADVNAQD 232

May play a role in cardiac physiology.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 5/127 (3%)

Query: 17  AAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA 76
           AA+ G+    K L+K      ++ + D+  T+LH A   G+  +V+ L  ++  AN+ +A
Sbjct: 645 AAKNGNLDLAKLLAKNG--ADVNAKTDNGETVLHYAVKSGNLHLVKWL--IENQANI-HA 699

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
             + G   +H A S  N  +V +L++ GADVN K D G TALHYA   G L +V LLIS 
Sbjct: 700 KTDNGETVLHYAVSFNNSDLVYLLIAYGADVNAKTDNGLTALHYAVYDGNLDLVSLLISH 759

Query: 137 GAKINSK 143
           GA +N+K
Sbjct: 760 GADVNAK 766

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q5GIG6|TNI3K_MOUSE Serine/threonine-protein kinase TNNI3K OS=Mus musculus GN=Tnni3k PE=2 SV=4

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 4/99 (4%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GHPE VE+LL    + NV +AV    + P+H AA  G+  +  +LL  GAD
Sbjct: 136 TALHIAAIAGHPEAVEVLLQHGANVNVQDAV---FFTPLHIAAYYGHEQVTSVLLKFGAD 192

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKD 144
           VN+  + G   LH A++KG+  IV+LL+    A +N++D
Sbjct: 193 VNVSGEVGDRPLHLASAKGFFNIVKLLVEGNKADVNAQD 231

May play a role in cardiac physiology.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q1RMI3|GABP1_BOVIN GA-binding protein subunit beta-1 OS=Bos taurus GN=GABPB1 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 58/99 (58%), Gaps = 3/99 (3%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH+AA  GH    E+LL    S +    VD     P+H AAS G+ +IVE+LL  GADVN
Sbjct: 42  LHLAAQYGHYSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHASIVEVLLKHGADVN 98

Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
            K+    TALH+A      ++VELLI  GA ++++ K C
Sbjct: 99  AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC 137

Transcription factor capable of interacting with purine rich repeats (GA repeats).

Bos taurus (taxid: 9913)

>sp|Q06547|GABP1_HUMAN GA-binding protein subunit beta-1 OS=Homo sapiens GN=GABPB1 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 58/99 (58%), Gaps = 3/99 (3%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH+AA  GH    E+LL    S +    VD     P+H AAS G+ +IVE+LL  GADVN
Sbjct: 42  LHLAAQYGHYSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHASIVEVLLKHGADVN 98

Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
            K+    TALH+A      ++VELLI  GA ++++ K C
Sbjct: 99  AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC 137

Transcription factor capable of interacting with purine rich repeats (GA repeats). Necessary for the expression of the Adenovirus E4 gene.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 61/133 (45%), Gaps = 30/133 (22%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANV----------------------------- 73
           +D  T LHVAA CGH +V ++LL    S N                              
Sbjct: 348 NDYLTALHVAAHCGHYKVAKVLLDKKASPNAKALNGFTPLHIACKKNRIRVMELLLKHGA 407

Query: 74  -VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132
            + AV E G  PIH AA +G+V IV  L+  GA  N  N  G TALH AA  G  ++V  
Sbjct: 408 SIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRY 467

Query: 133 LISRGAKINSKDK 145
           L+  GA++ +K K
Sbjct: 468 LVQDGAQVEAKAK 480

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
224108912	244	predicted protein [Populus trichocarpa]	0.929	0.594	0.771	5e-55
297738054	167	unnamed protein product [Vitis vinifera]	0.987	0.922	0.672	1e-53
359472517	243	PREDICTED: serine/threonine-protein phos	0.929	0.596	0.686	5e-52
255542108	243	ankyrin repeat-containing protein, putat	0.916	0.588	0.733	6e-52
449452082	243	PREDICTED: 26S proteasome non-ATPase reg	0.929	0.596	0.7	6e-52
351726608	243	uncharacterized protein LOC100499930 [Gl	0.929	0.596	0.682	2e-50
363814565	228	uncharacterized protein LOC100795610 [Gl	0.929	0.635	0.691	2e-50
388490486	245	unknown [Lotus japonicus]	0.929	0.591	0.666	1e-49
4335756	247	putative ankyrin [Arabidopsis thaliana]	0.910	0.574	0.633	2e-45
30678058	240	26S proteasome non-ATPase regulatory sub	0.910	0.591	0.633	2e-45

>gi|224108912|ref|XP_002315012.1| predicted protein [Populus trichocarpa] gi|222864052|gb|EEF01183.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 129/149 (86%), Gaps = 4/149 (2%)

Query: 1   MDMDIDQT--IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHP 58
           MDMDID    IKDKDLFKAAETGDSSTFKSL  ++L K+LSL+NDD R++LHVAAS GHP
Sbjct: 3   MDMDIDPPSQIKDKDLFKAAETGDSSTFKSLPPERLSKALSLQNDDGRSVLHVAASSGHP 62

Query: 59  EVVEILLSVDESAN-VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRT 116
           EVV+IL  +D+S++ VVN  DEEGWAP+HSAASIGNV IVE+LLSKG ADVNLKNDGGR 
Sbjct: 63  EVVKILSDIDQSSSAVVNGKDEEGWAPLHSAASIGNVEIVEILLSKGRADVNLKNDGGRA 122

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDK 145
           ALHYAASKGWLKI +LLIS GAKIN KDK
Sbjct: 123 ALHYAASKGWLKIAQLLISHGAKINIKDK 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738054|emb|CBI27255.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/159 (67%), Positives = 129/159 (81%), Gaps = 5/159 (3%)

Query: 3   MDIDQT-----IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH 57
           M+ID T     IKD+DLF+AA++GDSS F++LS QQLL++LSLRN+DDR+LLHVA S GH
Sbjct: 1   MEIDPTEPEAQIKDEDLFRAADSGDSSVFRALSPQQLLRALSLRNEDDRSLLHVATSLGH 60

Query: 58  PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA 117
            EVV++L   D S + +N+VDEEGWAP+HSAAS G+  IVE+L+S+GADVNLKNDGGRTA
Sbjct: 61  LEVVKMLSEADPSVSGINSVDEEGWAPLHSAASSGHTEIVEILISRGADVNLKNDGGRTA 120

Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPGS 156
           LHYAASKGWLKI E LI   AKIN+KDKA  LH IA  S
Sbjct: 121 LHYAASKGWLKIAEFLILHNAKINAKDKAYRLHPIASSS 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472517|ref|XP_002271979.2| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Vitis vinifera]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/150 (68%), Positives = 125/150 (83%), Gaps = 5/150 (3%)

Query: 1   MDMDIDQT-----IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC 55
           MDM+ID T     IKD+DLF+AA++GDSS F++LS QQLL++LSLRN+DDR+LLHVA S 
Sbjct: 1   MDMEIDPTEPEAQIKDEDLFRAADSGDSSVFRALSPQQLLRALSLRNEDDRSLLHVATSL 60

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH EVV++L   D S + +N+VDEEGWAP+HSAAS G+  IVE+L+S+GADVNLKNDGGR
Sbjct: 61  GHLEVVKMLSEADPSVSGINSVDEEGWAPLHSAASSGHTEIVEILISRGADVNLKNDGGR 120

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDK 145
           TALHYAASKGWLKI E LI   AKIN+KDK
Sbjct: 121 TALHYAASKGWLKIAEFLILHNAKINAKDK 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542108|ref|XP_002512118.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223549298|gb|EEF50787.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  208 bits (530), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 110/150 (73%), Positives = 123/150 (82%), Gaps = 7/150 (4%)

Query: 3   MDIDQT------IKDKDLFKAAETGDSSTFKSLSKQQLLKSL-SLRNDDDRTLLHVAASC 55
           M+ID T      I DKDLFKAAE+GDSSTFKSLS +QL  +L SL+NDD R+LLHVAASC
Sbjct: 1   MEIDSTDQTGRQITDKDLFKAAESGDSSTFKSLSPEQLSTALLSLQNDDARSLLHVAASC 60

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH EVV+ILL VDE  +VVN+ DEEGW P+HSAASIGN+ IVE+LLSKGADVN K DGGR
Sbjct: 61  GHLEVVKILLDVDEPKSVVNSKDEEGWTPLHSAASIGNLEIVEILLSKGADVNAKTDGGR 120

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDK 145
            ALHYAASKGWLKI E+LI  GAKIN KDK
Sbjct: 121 AALHYAASKGWLKIAEVLILHGAKINLKDK 150

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452082|ref|XP_004143789.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Cucumis sativus] gi|449513555|ref|XP_004164356.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Cucumis sativus]

 Score =  208 bits (529), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 105/150 (70%), Positives = 122/150 (81%), Gaps = 5/150 (3%)

Query: 1   MDMDIDQT-----IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC 55
           MDM+ID +     IKD DLFKAAETGDSS F +L+  QL +SLSLRN+DDR+LLHVA S 
Sbjct: 1   MDMEIDASKDVCLIKDNDLFKAAETGDSSVFTALTPHQLSQSLSLRNEDDRSLLHVAVSS 60

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH +VV+IL++ D+S  V+N  DEEGWAPIHSAASIG   I+++LLS GADVNLKNDGGR
Sbjct: 61  GHADVVKILVTADQSTKVINCADEEGWAPIHSAASIGRSDILDILLSGGADVNLKNDGGR 120

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDK 145
           TALHYA+SKGWLKI E LIS GAKIN KDK
Sbjct: 121 TALHYASSKGWLKIAETLISHGAKINLKDK 150

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726608|ref|NP_001238156.1| uncharacterized protein LOC100499930 [Glycine max] gi|255627777|gb|ACU14233.1| unknown [Glycine max]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/151 (68%), Positives = 122/151 (80%), Gaps = 6/151 (3%)

Query: 1   MDMDIDQ------TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAAS 54
           M+M++D        +K+KDLFKAAE GD STF++ S + L K+LSLRN+D R+LLHVAAS
Sbjct: 1   MEMEVDTEKKQQDVVKEKDLFKAAEEGDMSTFEAHSSETLSKALSLRNEDARSLLHVAAS 60

Query: 55  CGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG 114
            GH +VV++LLS D S  VVN  DEEGWAP+HSAASIG+V IVE LLSKGADVNLKN+GG
Sbjct: 61  SGHSQVVKMLLSCDASVGVVNCADEEGWAPLHSAASIGSVEIVETLLSKGADVNLKNNGG 120

Query: 115 RTALHYAASKGWLKIVELLISRGAKINSKDK 145
           RTALHYAASKGW+KI E+LIS  AKIN KDK
Sbjct: 121 RTALHYAASKGWVKIAEMLISHDAKINIKDK 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814565|ref|NP_001242758.1| uncharacterized protein LOC100795610 [Glycine max] gi|255634879|gb|ACU17798.1| unknown [Glycine max]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/149 (69%), Positives = 124/149 (83%), Gaps = 4/149 (2%)

Query: 1   MDMDIDQ----TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           M++DI++     +K+KDLFKAAE G++STF++LS + L K+LSLRN+D R+LLHVAAS G
Sbjct: 3   MEVDIEKKQQDVVKEKDLFKAAEEGEASTFEALSSEILSKALSLRNEDARSLLHVAASSG 62

Query: 57  HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116
           H +VV+I LS D SA VVN  DEEGWAP+HSAASIG+V IVE LLSKGADVNLKN+GGR 
Sbjct: 63  HSQVVKIALSCDASAGVVNCADEEGWAPLHSAASIGSVEIVETLLSKGADVNLKNNGGRA 122

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDK 145
           ALHYAASKGW+KI E+LIS  AKIN KDK
Sbjct: 123 ALHYAASKGWVKIAEMLISHDAKINIKDK 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490486|gb|AFK33309.1| unknown [Lotus japonicus]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/153 (66%), Positives = 124/153 (81%), Gaps = 8/153 (5%)

Query: 1   MDMDIDQ--------TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVA 52
           M+M++D          +K+KDLFKAAE GD+STF++ S + L +SLSLRN+D R+LLHVA
Sbjct: 1   MEMEVDSEKNQQDTVMVKEKDLFKAAEEGDTSTFQASSPETLSESLSLRNEDARSLLHVA 60

Query: 53  ASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
           AS GH +VV+ILLS D SA+VVN+ D+EGWAP+HSAASIGN+ IVE LLSKGADVNLKN 
Sbjct: 61  ASSGHSQVVKILLSADASASVVNSADDEGWAPLHSAASIGNLEIVEALLSKGADVNLKNG 120

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           GGRTALHYAASKG +KI E+LIS  AK+N KDK
Sbjct: 121 GGRTALHYAASKGRVKIAEILISHDAKVNIKDK 153

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4335756|gb|AAD17433.1| putative ankyrin [Arabidopsis thaliana]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 118/142 (83%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           D  + ++D++LFKAAE GDSS F SLS++QL KSL+ RN+D R+LLHVAAS GH ++V++
Sbjct: 6   DTAKQMRDEELFKAAEWGDSSLFMSLSEEQLSKSLNFRNEDGRSLLHVAASFGHSQIVKL 65

Query: 64  LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123
           L S DE+  V+N+ D+EGWAP+HSAASIGN  +VE+LL++GADVN KN+GGRTALHYAAS
Sbjct: 66  LSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADVNAKNNGGRTALHYAAS 125

Query: 124 KGWLKIVELLISRGAKINSKDK 145
           KG L+I +LL++ GAKIN  DK
Sbjct: 126 KGRLEIAQLLLTHGAKINITDK 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30678058|ref|NP_178442.2| 26S proteasome non-ATPase regulatory subunit 10 [Arabidopsis thaliana] gi|26449603|dbj|BAC41927.1| putative ankyrin [Arabidopsis thaliana] gi|28950799|gb|AAO63323.1| At2g03430 [Arabidopsis thaliana] gi|330250605|gb|AEC05699.1| 26S proteasome non-ATPase regulatory subunit 10 [Arabidopsis thaliana]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 118/142 (83%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           D  + ++D++LFKAAE GDSS F SLS++QL KSL+ RN+D R+LLHVAAS GH ++V++
Sbjct: 6   DTAKQMRDEELFKAAEWGDSSLFMSLSEEQLSKSLNFRNEDGRSLLHVAASFGHSQIVKL 65

Query: 64  LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123
           L S DE+  V+N+ D+EGWAP+HSAASIGN  +VE+LL++GADVN KN+GGRTALHYAAS
Sbjct: 66  LSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADVNAKNNGGRTALHYAAS 125

Query: 124 KGWLKIVELLISRGAKINSKDK 145
           KG L+I +LL++ GAKIN  DK
Sbjct: 126 KGRLEIAQLLLTHGAKINITDK 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2063804	240	AT2G03430 "AT2G03430" [Arabido	0.961	0.625	0.565	4.2e-40
UNIPROTKB|E2RA22	226	PSMD10 "Uncharacterized protei	0.705	0.486	0.474	6.5e-19
UNIPROTKB|O75832	226	PSMD10 "26S proteasome non-ATP	0.705	0.486	0.474	6.5e-19
UNIPROTKB|Q2KI59	151	PSMD10 "Proteasome (Prosome, m	0.705	0.728	0.474	6.5e-19
RGD|620350	231	Psmd10 "proteasome (prosome, m	0.647	0.437	0.495	1.4e-18
MGI|MGI:1858898	231	Psmd10 "proteasome (prosome, m	0.647	0.437	0.495	2.2e-18
DICTYBASE|DDB_G0289189	232	psmD10 "26S proteasome non-ATP	0.647	0.435	0.461	5.3e-17
ZFIN|ZDB-GENE-050112-1	226	psmd10 "proteasome (prosome, m	0.647	0.446	0.432	6.7e-17
UNIPROTKB|F1P1R3	189	PSMD10 "Uncharacterized protei	0.628	0.518	0.435	9.8e-16
UNIPROTKB|G5E5T9	232	GABPB1 "GA-binding protein sub	0.615	0.413	0.434	1.4e-14

TAIR|locus:2063804 AT2G03430 "AT2G03430" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 86/152 (56%), Positives = 111/152 (73%)

Query:     4 DIDQTIKDKDLFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDRTLLHVAASCGHPEVVEI 63
             D  + ++D++LFKAAE GDSS F              RN+D R+LLHVAAS GH ++V++
Sbjct:     6 DTAKQMRDEELFKAAEWGDSSLFMSLSEEQLSKSLNFRNEDGRSLLHVAASFGHSQIVKL 65

Query:    64 LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123
             L S DE+  V+N+ D+EGWAP+HSAASIGN  +VE+LL++GADVN KN+GGRTALHYAAS
Sbjct:    66 LSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADVNAKNNGGRTALHYAAS 125

Query:   124 KGWLKIVELLISRGAKINSKDKA-CW-LHSIA 153
             KG L+I +LL++ GAKIN  DK  C  LH  A
Sbjct:   126 KGRLEIAQLLLTHGAKINITDKVGCTPLHRAA 157

GO:0008150 "biological_process" evidence=ND

GO:0005618 "cell wall" evidence=IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007140 "male meiosis" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

UNIPROTKB|E2RA22 PSMD10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 55/116 (47%), Positives = 68/116 (58%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--KACWLHSIA 153
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD  +A  +H  A
Sbjct:    92 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA 147

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|O75832 PSMD10 "26S proteasome non-ATPase regulatory subunit 10" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 55/116 (47%), Positives = 68/116 (58%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--KACWLHSIA 153
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD  +A  +H  A
Sbjct:    92 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA 147

GO:0005515 "protein binding" evidence=IPI

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0070682 "proteasome regulatory particle assembly" evidence=IMP

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:0043409 "negative regulation of MAPK cascade" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IDA;IMP

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IMP

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

GO:0000502 "proteasome complex" evidence=TAS

GO:0005838 "proteasome regulatory particle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

UNIPROTKB|Q2KI59 PSMD10 "Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 10" [Bos taurus (taxid:9913)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 55/116 (47%), Positives = 68/116 (58%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--KACWLHSIA 153
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD  +A  +H  A
Sbjct:    92 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA 147

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

RGD|620350 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Rattus norvegicus (taxid:10116)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 52/105 (49%), Positives = 64/105 (60%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNEKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             LL KGA VN  N  G TALHYAASK   +I  +L+  GA  ++K+
Sbjct:    92 LLIKGAQVNAVNQNGCTALHYAASKNRHEIAVMLLEGGANPDAKN 136

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO;ISS

GO:0008134 "transcription factor binding" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO;ISS

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO;ISS

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO;ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;ISS

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO;ISS

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO;ISS

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO;ISS

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO;ISS

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO;ISS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISO

MGI|MGI:1858898 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Mus musculus (taxid:10090)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 52/105 (49%), Positives = 63/105 (60%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct:    92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO

DICTYBASE|DDB_G0289189 psmD10 "26S proteasome non-ATPase regulatory subunit 10" [Dictyostelium discoideum (taxid:44689)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 48/104 (46%), Positives = 65/104 (62%)

Query:    41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
             +++D+RT LH AA+ G   V + L+  D      N  D+ GW P+ SA S G+  +V++L
Sbjct:    42 KDEDERTPLHWAAAKGQISVAQYLM--DNCKCSPNTNDDGGWTPLTSATSAGHTHMVKLL 99

Query:   101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             L  GAD N  ND  RT LHYA+SKG   IV+LL++ GAK N KD
Sbjct:   100 LEFGADPNTVNDSKRTPLHYASSKGRSDIVDLLLTHGAK-NRKD 142

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-050112-1 psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Danio rerio (taxid:7955)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 45/104 (43%), Positives = 59/104 (56%)

Query:    42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             + D RT LH A S GH  + + LL +      V+  D+  W P+H AAS G   IV  L+
Sbjct:    37 DQDSRTALHWACSAGHVNIAQFLLDLGVE---VDLKDDACWTPLHIAASAGREEIVRSLI 93

Query:   102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             SKGA +N  N  G T LHYAASK   +I ++L+  GA  N+ DK
Sbjct:    94 SKGAQLNSVNQNGCTPLHYAASKNLYEIAQILLENGADPNATDK 137

GO:0000502 "proteasome complex" evidence=IEA

GO:0055088 "lipid homeostasis" evidence=IMP

UNIPROTKB|F1P1R3 PSMD10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 44/101 (43%), Positives = 57/101 (56%)

Query:    44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
             D RT LH A S GH  V ++LL +      V   D+ GW P+H AAS G   IV+ L+ K
Sbjct:     2 DSRTALHWACSAGHAAVADLLLGLGVP---VGDKDDAGWTPLHIAASAGRDEIVKALIDK 58

Query:   104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             GA +N  N  G T LHYAASK   +I  +L+  GA  ++ D
Sbjct:    59 GAPINAVNQNGCTPLHYAASKNKQEIAIMLLENGADPDATD 99

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

UNIPROTKB|G5E5T9 GABPB1 "GA-binding protein subunit beta-1" [Bos taurus (taxid:9913)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 43/99 (43%), Positives = 58/99 (58%)

Query:    49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
             LH+AA  GH    E+LL    S +    VD     P+H AAS G+ +IVE+LL  GADVN
Sbjct:    42 LHLAAQYGHYSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHASIVEVLLKHGADVN 98

Query:   109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
              K+    TALH+A      ++VELLI  GA ++++ K C
Sbjct:    99 AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC 137

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0006061702 hypothetical protein (245 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-33
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-29
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-23
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-15
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-15
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-14
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-13
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-12
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-11
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-07
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-07
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	4e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-06
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	6e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-06
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	9e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
smart00248	30	smart00248, ANK, ankyrin repeats	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
smart00248	30	smart00248, ANK, ankyrin repeats	6e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	8e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.002
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.002
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  114 bits (286), Expect = 2e-33
 Identities = 53/105 (50%), Positives = 73/105 (69%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R++D RT LH+AAS GH EVV++LL   E+   VNA D +G  P+H AA  G++ IV++L
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLL---ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L KGADVN ++  G T LH AA  G L +V+LL+  GA +N++DK
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDK 104

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  102 bits (257), Expect = 5e-29
 Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 5/121 (4%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  AA  G     K L +      ++ +++D RT LH+AA  GH E+V++LL   E    
Sbjct: 11  LHLAASNGHLEVVKLLLENG--ADVNAKDNDGRTPLHLAAKNGHLEIVKLLL---EKGAD 65

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           VNA D++G  P+H AA  GN+ +V++LL  GADVN ++  GRT LH AA  G L++V+LL
Sbjct: 66  VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

Query: 134 I 134
           +
Sbjct: 126 L 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 95.4 bits (238), Expect = 1e-26
 Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH+AA  G+ E+V++LL      N+ +         +H AA  GN+ IV++LL  GADVN
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT-----ALHLAARNGNLEIVKLLLEHGADVN 55

Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            K+  G TALH AA  G L+IV+LL+  GA IN KD
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.4 bits (217), Expect = 5e-23
 Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 2/78 (2%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           NA DE+G  P+H AAS G++ +V++LL  GADVN K++ GRT LH AA  G L+IV+LL+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 135 SRGAKINSKDKACW--LH 150
            +GA +N++DK     LH
Sbjct: 61  EKGADVNARDKDGNTPLH 78

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.9 bits (164), Expect = 2e-15
 Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 85  IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           +H AA  GN+ +V++LL KGADVNL +    TALH AA  G L+IV+LL+  GA +N+KD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 145 KACW--LH 150
           K     LH
Sbjct: 59  KDGNTALH 66

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 70.5 bits (173), Expect = 5e-15
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 12/113 (10%)

Query: 42  NDDDRTLLHVAASCGH-----PEVVEILLSVDESANVVNAVDEEGWAPIHSAAS--IGNV 94
             ++ T LH  ++  +      E+V++LL     ANV NA D  G  P+  A S    + 
Sbjct: 65  TKNNSTPLHYLSNIKYNLTDVKEIVKLLLE--YGANV-NAPDNNGITPLLYAISKKSNSY 121

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGW--LKIVELLISRGAKINSKDK 145
           +IVE LL  GA+VN+KN  G   LH         LKI++LLI +G  IN+K++
Sbjct: 122 SIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR 174

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 67.5 bits (164), Expect = 2e-14
 Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 7/130 (5%)

Query: 13  DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHP-----EVVEILLSV 67
            L  AA  GD    K L        ++ ++ D  T LH+AA  G+P     EV ++LL  
Sbjct: 76  PLHSAASKGDDKIVKLLLASGA--DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA 133

Query: 68  DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL 127
               +V N  DE+G  P+H AA  G+  IVE+LL  GAD N +N  G TAL  AA  G +
Sbjct: 134 GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRI 193

Query: 128 KIVELLISRG 137
           ++V+LL+ +G
Sbjct: 194 ELVKLLLDKG 203

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV-TIVEMLLSK 103
            +T LH+       +V +I+  + E+   VNA +  G+ P+H          ++++L+  
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKA 106

Query: 104 GADVNLKNDGGRTALH-YAASKGWL--KIVELLISRGAKINSKDK 145
           GADVN K+  GRT LH Y +    +  K++ LL+ +GA +N+ D 
Sbjct: 107 GADVNAKDKVGRTPLHVYLSGF-NINPKVIRLLLRKGADVNALDL 150

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 15/114 (13%)

Query: 47  TLLHVAASCGHP--EVVEILLS----VDESANV---------VNAVDEEGWAPIHSAASI 91
            LLH+         +++++L+     ++    V         +N  D  G+ P+H A   
Sbjct: 143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYN 202

Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            N   V+ LL  GA+ NL N  G T LH A      +I +LL++ G  I +  +
Sbjct: 203 NNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE 256

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 57.6 bits (140), Expect = 3e-12
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           G   +H AA  G + +V+ LL KG D+N  ++ G TALH AA  G L++++LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 61.4 bits (148), Expect = 4e-12
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 12/154 (7%)

Query: 2   DMDIDQTIKDKDLFKAAETGDSSTFKSLS-KQQLLKSLSLRNDDDRTLLHVAASCGHPEV 60
               + + K  +L+       +++   L  K  + + L+ R+ D R  LH AAS G  ++
Sbjct: 29  LDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKI 88

Query: 61  VEILLSVDESANVVNAVDEEGWAPIHSAA-----SIGNVTIVEMLLSKGA---DVNLKND 112
           V++LL+       VNA D +G  P+H AA       GN+ + ++LL  GA     NL+++
Sbjct: 89  VKLLLASGAD---VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE 145

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
            G T LH+AA  G   IVELL+  GA  NS++  
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSY 179

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 62.3 bits (151), Expect = 4e-12
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           +++++ + +T LH A   G  E +++L    E    VN  D+ G  PIH A       I+
Sbjct: 117 VNIKDAELKTFLHYAIKKGDLESIKMLF---EYGADVNIEDDNGCYPIHIAIKHNFFDII 173

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           ++LL KGA  N+K++ G + LH AA  G    ++LLI  G  I +K
Sbjct: 174 KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK 219

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 61.6 bits (150), Expect = 8e-12
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG-----NVTIVEML 100
              L++A    + +VV+ILL  D  A++ ++       P+H  ++I         IV++L
Sbjct: 36  VLPLYLAKEARNIDVVKILL--DNGADINSSTKNN-STPLHYLSNIKYNLTDVKEIVKLL 92

Query: 101 LSKGADVNLKNDGGRTALHYAASK--GWLKIVELLISRGAKINSKDK 145
           L  GA+VN  ++ G T L YA SK      IVE L+  GA +N K+ 
Sbjct: 93  LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS 139

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 11/124 (8%)

Query: 41  RNDDDRTLLHVAAS--CGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTI-- 96
           ++   RT LHV  S    +P+V+ +LL   + A+V NA+D  G  P+       N  +  
Sbjct: 113 KDKVGRTPLHVYLSGFNINPKVIRLLL--RKGADV-NALDLYGMTPLAVLLKSRNANVEL 169

Query: 97  VEMLLSKGADVNLKNDGGRTALHYAA--SKGWLKIVELLISRGAKINSKDKA--CWLHSI 152
           + +L+  GADV   +D  R+ LH+     K   +IV  LI  G    + D      LHS+
Sbjct: 170 LRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSM 229

Query: 153 APGS 156
           A GS
Sbjct: 230 ATGS 233

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 52.0 bits (125), Expect = 4e-10
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 67  VDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           ++     +NA D  G  P+H AA  G + +V+ LL  G D+NL++  G TAL  A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
               T LH A       + E+LLS   + N+ +  +    +P+H A    N  IV +LL 
Sbjct: 166 HKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNN---SPLHHAVKHYNKPIVHILLE 222

Query: 103 KGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSK 143
            GA  + ++  G T LH +        I++LL+  G  +N+K
Sbjct: 223 NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAK 264

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.5 bits (119), Expect = 4e-09
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           RT LH AA  G  E+V+ LL   E    +N  DE+G   +H AA  GN+ ++++LL
Sbjct: 2   RTALHKAAISGRLELVKYLL---EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 59  EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL 118
           E+ ++LLS     N+ +    +G   +H A    +  + E+LLS GA+VN+ +    + L
Sbjct: 148 EITKLLLSYGADINMKD--RHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL 205

Query: 119 HYAASKGWLKIVELLISRGAKINSKDK 145
           H+A       IV +L+  GA  +++DK
Sbjct: 206 HHAVKHYNKPIVHILLENGASTDARDK 232

Length = 477

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 36/166 (21%)

Query: 6   DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
           D      +L   A TG+++  + L K +      + +   RT LH+AAS G+ + V +LL
Sbjct: 521 DDPNMASNLLTVASTGNAALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLL 578

Query: 66  SVDESANVVNAVDEEG----WAPIHS---------------------------AASIGNV 94
              + A  V+  D  G    W  I +                           AA   ++
Sbjct: 579 ---KHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDL 635

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           T ++ LL +G +V+ ++  G TAL  A ++  + +V LLI  GA +
Sbjct: 636 TAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV 681

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           G T LH AA  G L++V+LL+  GA +N++DK
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 53  ASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS--AASIGNVT-IVEMLLSKGADVNL 109
            +  +  V E+   +   A+V N   E G  P+H     S   V  IV +LL  GADVN 
Sbjct: 20  LNASNVTVEEVRRLLAAGADV-NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA 78

Query: 110 KNDGGRTALH-YAASKGWLKIVELLISRGAKINSKDKA 146
               G T LH Y  +   L +++LLI  GA +N+KDK 
Sbjct: 79  PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKV 116

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 25/46 (54%), Positives = 31/46 (67%)

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           I EMLL  GADVN K+    T +HYAA +G  K+V LL+S GA +N
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN 205

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 50.3 bits (120), Expect = 6e-08
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           L + N  D ++L +   C   ++++ +L   +    VN  D E    +H A   G++  +
Sbjct: 86  LLIDNGVDTSILPI--PCIEKDMIKTIL---DCGIDVNIKDAELKTFLHYAIKKGDLESI 140

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           +ML   GADVN+++D G   +H A    +  I++LL+ +GA  N KD
Sbjct: 141 KMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD 187

Length = 434

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.3 bits (120), Expect = 7e-08
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 48  LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
           L  +AAS G      ILL         N  D +G  P+H A + G+V +V +LL  GAD 
Sbjct: 86  LCQLAAS-GDAVGARILL---TGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP 141

Query: 108 NLKNDGGRTALHYAASKGWLKIVELLIS 135
            L +  G+T L  A   G+ ++V+LL  
Sbjct: 142 TLLDKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 6/106 (5%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEML 100
           N +D +LL    +    E +E  L + ++   VN++D+    P+H A+   +++ +V  L
Sbjct: 238 NKNDLSLLKAIRN----EDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKL 293

Query: 101 LSKGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDK 145
           L +GADVN KN  G T L+  A  G+  + +  LI  GA +N+ D+
Sbjct: 294 LERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADR 339

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 14  LFKAAETGDSSTFKSLSKQ-QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN 72
           + K A +G+   +  +++  + +K +  R   D  L           + E+LL   E   
Sbjct: 124 ILKEAISGNDIHYDKINESIEYMKLIKERIQQDELL-----------IAEMLL---EGGA 169

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132
            VNA D     PIH AA  GN  +V +LLS GADVN+      + L  A     +  ++ 
Sbjct: 170 DVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKA 229

Query: 133 LISRGAKINSKD 144
           +I   + IN  D
Sbjct: 230 IIDNRSNINKND 241

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D  + LH A   G  + VE LL + + A+ V    ++G  P+H A  +  + I+++L+++
Sbjct: 67  DIESELHDAVEEGDVKAVEELLDLGKFADDV--FYKDGMTPLHLATILKKLDIMKLLIAR 124

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GAD ++ N    + LH A   G +K +ELLI   A ++ +D
Sbjct: 125 GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIED 165

Length = 413

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 42/140 (30%), Positives = 57/140 (40%), Gaps = 26/140 (18%)

Query: 34  LLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV-----DESANVVNAVDE------EGW 82
           LL +LS R     TLLH A S  + + VE +L        +S  +  A D+       G 
Sbjct: 71  LLLNLSCRGAVGDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI 129

Query: 83  APIHSAASIGNVTIVEMLLSKGADVNLKNDG--------------GRTALHYAASKGWLK 128
             +H AA   N  IV++LL +GA V  +  G              G + L+ AA  G   
Sbjct: 130 TALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPS 189

Query: 129 IVELLISRGAKINSKDKACW 148
           IV LL    A I + D    
Sbjct: 190 IVALLSEDPADILTADSLGN 209

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 5/101 (4%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH A++    +  +I++++ E    VNA D     PIH AA   NV I+  LL  GAD
Sbjct: 343 TPLHQASTLDRNK--DIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD 400

Query: 107 VNLKNDGGRTALHYA--ASKGWLKIVELLISRGAKINSKDK 145
           +   +    TALH+A   +  ++  V+ LI RGA +NSK+K
Sbjct: 401 IEALSQKIGTALHFALCGTNPYMS-VKTLIDRGANVNSKNK 440

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N D  + LH+A   G  + +E+L+  D  A  ++  D  G  P+  A + G++ I +MLL
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLI--DHKA-CLDIEDCCGCTPLIIAMAKGDIAICKMLL 188

Query: 102 SKGADVN-LKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
             GA+++    +G   AL YA     + IV L I RGA  N
Sbjct: 189 DSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN 229

Length = 413

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVEL 132
           N  D++G  P+H A+ I N  IV MLL+ GAD N  +   +T L+Y +      ++ + L
Sbjct: 66  NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINL 125

Query: 133 LISRGAKINS 142
           L+  GAKIN+
Sbjct: 126 LVQYGAKINN 135

Length = 446

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 87  SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           + AS GN  ++E LL    D ++ +  GRT LH AASKG+   V +L+     ++ +D
Sbjct: 531 TVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD 588

Length = 823

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.7 bits (110), Expect = 8e-07
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 8/82 (9%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG-----WLKI 129
            A D +G  P+HSAAS G+  IV++LL+ GADVN K+  G T LH AA  G      +++
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126

Query: 130 VELLISRGAK---INSKDKACW 148
            +LL+  GA     N +D+   
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGN 148

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.9 bits (102), Expect = 8e-07
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
           +G  P+H AA  G++ +V++LL  GADVN ++ 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 41  RNDDDRTLLHVAASCGHP--EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV--TI 96
            +D  R+LLH       P   +V  L+          A D  G  P+HS A+  +   ++
Sbjct: 183 VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA---ATDMLGNTPLHSMATGSSCKRSL 239

Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           V  LL  G  +N +N  G+T LHYAA     +    LI+ GA IN
Sbjct: 240 VLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN 284

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 11/148 (7%)

Query: 1   MDMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           +D  ID  IKD +    L  A + GD  + K L +      +++ +D+    +H+A    
Sbjct: 111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG--ADVNIEDDNGCYPIHIAIKHN 168

Query: 57  HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116
             +++++LL   E     N  D  G +P+H+AA  G+   +++L+  G  +  K   G T
Sbjct: 169 FFDIIKLLL---EKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFT 225

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKD 144
            LH A        +ELLI+  A IN +D
Sbjct: 226 PLHNAIIHN-RSAIELLIN-NASINDQD 251

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 28/114 (24%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 32  QQLLKSLSLRND----DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           ++LL      +D    D  T LH+A      +++++L++     ++ N    + ++P+H 
Sbjct: 85  EELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNT---DKFSPLHL 141

Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           A  +G++  +E+L+   A +++++  G T L  A +KG + I ++L+  GA I+
Sbjct: 142 AVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID 195

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 7/102 (6%)

Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH-SAASIGNVTIVEMLLSK 103
           + + LH A    +  +V ILL   E+    +A D+ G  P+H S     +  I+++LL  
Sbjct: 201 NNSPLHHAVKHYNKPIVHILL---ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEH 257

Query: 104 GADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           G DVN K+   G TALH +      + ++LL+  GA INS +
Sbjct: 258 GVDVNAKSYILGLTALHSSIKSE--RKLKLLLEYGADINSLN 297

Length = 477

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 43.5 bits (102), Expect = 6e-06
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 34  LLKSLSLRNDDDRTLLHVAASCGHPEV---VEILLSVDESANVVNAVDEEGWAPIHSAAS 90
           L + ++ +N +     H AA CG  ++       +  D  A  +NA D+ G   IH AA 
Sbjct: 10  LEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAE 69

Query: 91  IGN----VTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELL 133
                    I++ L+  GAD+N +    G TALH AA +    + E L
Sbjct: 70  KHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWL 117

Length = 169

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 44.2 bits (104), Expect = 7e-06
 Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 30/140 (21%)

Query: 32  QQLLKS----LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           ++++K+    +++  D+  T L  A   G  ++VE+ +   +    +N ++ +   P+ +
Sbjct: 18  EKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFI---KHGADINHINTKIPHPLLT 74

Query: 88  AASIGNVTIVEMLLSKGAD-----------------------VNLKNDGGRTALHYAASK 124
           A  IG   I+++L+  G D                       VN+K+   +T LHYA  K
Sbjct: 75  AIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKK 134

Query: 125 GWLKIVELLISRGAKINSKD 144
           G L+ +++L   GA +N +D
Sbjct: 135 GDLESIKMLFEYGADVNIED 154

Length = 434

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 43.9 bits (103), Expect = 9e-06
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           P+H AA++ +  IV++LL  G D +  +D G TAL+YA   G ++ V+L + +  ++   
Sbjct: 64  PLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 123

Query: 144 DKACW 148
            K  W
Sbjct: 124 GKTGW 128

Length = 284

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 14 LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
          L KAA +G     K L   +    ++  ++D  T LH+AA  G+ EV+++LL
Sbjct: 5  LHKAAISGRLELVKYLL--EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 100 LLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLH 150
           LL  G  D+N  +  G T LH AA  G L++V+ L+  G  +N +D      
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTA 52

Length = 56

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKIN 141
           G T LH AA  G L++V+LL+  GA IN
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 4  DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLK---SLSLRNDDDRTLLHVAASCGHPEV 60
          D++    D  L  AA  G+    K      LL+    ++ ++ D  T LH+AA  G+ E+
Sbjct: 22 DVNLGDTDTALHLAARNGNLEIVK-----LLLEHGADVNAKDKDGNTALHLAARNGNLEI 76

Query: 61 VEILLSVDESANVVN 75
          V++LL      N+ +
Sbjct: 77 VKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
           GRTALH AA  G L++V+ L+ +G  IN  D+   
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGN 35

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 86  HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             AAS G+     +LL+ GAD N ++  GRT LH A + G +++V +L+  GA     DK
Sbjct: 88  QLAAS-GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146

Length = 664

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 41  RNDDDRTLLHVAA---SCGHPEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTI 96
            +    T LH  A   SC    V+ +L+     A + +NA +  G  P+H AA   N   
Sbjct: 218 TDMLGNTPLHSMATGSSCKRSLVLPLLI-----AGISINARNRYGQTPLHYAAVFNNPRA 272

Query: 97  VEMLLSKGADVNLKNDGGRTAL 118
              L++ GAD+N  +  G T L
Sbjct: 273 CRRLIALGADINAVSSDGNTPL 294

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
           LR++D  T LH AA  G  ++VE+LL   E+    N+ +  G   +  AA  G + +V++
Sbjct: 142 LRDEDGNTPLHWAALNGDADIVELLL---EAGADPNSRNSYGVTALDPAAKNGRIELVKL 198

Query: 100 LLSKGADVNLKND 112
           LL KG  ++L   
Sbjct: 199 LLDKGLHLSLLKF 211

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 8e-05
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVN 75
          D  T LH+AA  GH EVV++LL      N  +
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 33  QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG 92
           +L  +++ R+  D+T +H AA   +  ++  LL  D  A++  A+ ++    +H A    
Sbjct: 363 ELGANVNARDYCDKTPIHYAAVRNNVVIINTLL--DYGADI-EALSQKIGTALHFALCGT 419

Query: 93  N-VTIVEMLLSKGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINS 142
           N    V+ L+ +GA+VN KN    T LHYA  K   L ++E+L+  GA +N+
Sbjct: 420 NPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNA 471

Length = 682

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R+ D RT LH+A + GH +VV +LL   E       +D++G  P+  A   G   +V++L
Sbjct: 111 RDYDGRTPLHIACANGHVQVVRVLL---EFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Query: 101 LS 102
             
Sbjct: 168 SR 169

Length = 664

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.6 bits (83), Expect = 4e-04
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKIN 141
           GRT LH AA  G L++V+LL+ +GA IN
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86
           + +  T LH+AA  G  E+V+ LL      N+    D +G   + 
Sbjct: 12 TDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL---RDSDGLTALD 54

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.3 bits (82), Expect = 6e-04
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNL 109
           +G  P+H AA  GN+ +V++LL KGAD+N 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
           +G +PI  A    +   +++L+  GA  ++K     + LH A  +G +K VE L+  G  
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93

Query: 140 IN 141
            +
Sbjct: 94  AD 95

Length = 413

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 59  EVVEILLSVDESANVVNAVDEEGWAPIHSAASIG---NVTIVEMLLSKGADVNLKNDGGR 115
           E+++ L  ++  A+V     +   + +H   S        I+++L+  G+ +  +++ G+
Sbjct: 67  EILKFL--IENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGK 124

Query: 116 TALHYAASKGWLKI--VELLISRGAKINSKDKAC 147
             LH       ++I  ++LLI  G    +KD   
Sbjct: 125 NLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDN 158

Length = 209

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.001
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           +G  P+H AA  GN+ +V++LL  GAD+N
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 22  DSSTFKSLSKQQLLKSL-------SLRNDDD--RTLLHVAASCGHPEVVEILLSVDESAN 72
           D S  K++  + L  SL       S+ + DD   T LH A+    P +  ++  + E   
Sbjct: 241 DLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQA--PSLSRLVPKLLERGA 298

Query: 73  VVNAVDEEGWAPIHSAASIG-NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK-IV 130
            VNA + +G  P++  A  G +   +  L+  GADVN  +    T LH A++    K IV
Sbjct: 299 DVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIV 358

Query: 131 ELLISRGAKINSKD 144
             L+  GA +N++D
Sbjct: 359 ITLLELGANVNARD 372

Length = 682

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 72  NVVNAVDEEGWAPIHSAASIGNVT--IVEMLLSKGADVNLKNDG-GRTALHYAASKGW-- 126
             VN  ++    PI S      V   I++ L+  GADVN K      +ALH+  S     
Sbjct: 42  KFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNV 101

Query: 127 -LKIVELLISRGAKINSKD 144
             +I+++LI  G+ I  +D
Sbjct: 102 EPEILKILIDSGSSITEED 120

Length = 209

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN---VTIV 97
           +N D  T L+   S G+   +EILL + E+      +D++G+  +       +   + I+
Sbjct: 105 KNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEII 164

Query: 98  EMLLSKGADVNL-KNDGGRTALH----YAASKGWLKIVELLISRGAKINSKDK 145
           ++LL KG D+N   N      LH    Y   +    I++L +  G  IN ++K
Sbjct: 165 KLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENK 217

Length = 489

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +N +D+ G   +H A      ++V +LL  G+DVN++++ G T +  A ++   + +ELL
Sbjct: 445 INMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINES--RNIELL 502

Length = 661

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.98
PHA02875	413	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02743	166	Viral ankyrin protein; Provisional	99.95
PHA02946	446	ankyin-like protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.94
PHA02989	494	ankyrin repeat protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02876	682	ankyrin repeat protein; Provisional	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
PHA02741	169	hypothetical protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02946	446	ankyin-like protein; Provisional	99.93
PHA03095	471	ankyrin-like protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
PHA02736	154	Viral ankyrin protein; Provisional	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PHA02798	489	ankyrin-like protein; Provisional	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PHA02989	494	ankyrin repeat protein; Provisional	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
KOG0508	615	consensus Ankyrin repeat protein [General function	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.89
PHA02730	672	ankyrin-like protein; Provisional	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
PHA02795	437	ankyrin-like protein; Provisional	99.89
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.89
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.87
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.87
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PHA02917	661	ankyrin-like protein; Provisional	99.85
PHA02730	672	ankyrin-like protein; Provisional	99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.85
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.85
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.79
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.77
PHA02792	631	ankyrin-like protein; Provisional	99.77
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.76
PHA02792	631	ankyrin-like protein; Provisional	99.76
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.76
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.76
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.76
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.75
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.74
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.73
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.67
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.65
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.63
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.61
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.6
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.6
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.57
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.52
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.51
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.44
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.35
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.35
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.23
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.22
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.22
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.19
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.09
PF13606	30	Ank_3: Ankyrin repeat	99.06
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.03
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.01
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.95
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.94
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.89
KOG0522	560	consensus Ankyrin repeat protein [General function	98.88
PF13606	30	Ank_3: Ankyrin repeat	98.85
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.84
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.83
KOG0522	560	consensus Ankyrin repeat protein [General function	98.81
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.79
KOG0511	516	consensus Ankyrin repeat protein [General function	98.6
KOG2384	223	consensus Major histocompatibility complex protein	98.5
KOG0511	516	consensus Ankyrin repeat protein [General function	98.38
KOG2384	223	consensus Major histocompatibility complex protein	98.3
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.24
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.2
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.17
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.09
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.06
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.45
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.41
KOG2505	591	consensus Ankyrin repeat protein [General function	97.33
KOG2505	591	consensus Ankyrin repeat protein [General function	97.3
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.19
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.15
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	96.67
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.12
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.91
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	84.85

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-36  Score=183.84  Aligned_cols=147  Identities=35%  Similarity=0.407  Sum_probs=136.0

Q ss_pred             ccccc-cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhh-cccccccccccCCC
Q 031607            4 DIDQT-IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV-DESANVVNAVDEEG   81 (156)
Q Consensus         4 ~~~~~-~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~   81 (156)
                      +.++. .|++|||+||..|..+++.+|+.+ ....++.+|..||||||.||..|+.++++.|+.+ +.+   ++.....|
T Consensus        31 ~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad---vna~tn~G  106 (226)
T KOG4412|consen   31 NARDDQDGRTPLHWACSFGHVEIVYFLLSQ-PNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD---VNATTNGG  106 (226)
T ss_pred             hccccccCCceeeeeeecCchhHHHHHHhc-CCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC---cceecCCC
Confidence            44444 899999999999999999999973 3467788899999999999999999999999988 555   78888999


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      .|+||+|+..+..++.++|++.|+.++.+|..|+||||-|+..|..+++++|+..|+.+|..|++|+||||.+
T Consensus       107 ~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  107 QTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHA  179 (226)
T ss_pred             cceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999854

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=4.4e-32  Score=164.70  Aligned_cols=147  Identities=28%  Similarity=0.400  Sum_probs=138.3

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      .+|..|..|.+|||+|+..|+-+.|+.|+.+. +.+++..+..|.|+||||+-.|+.+++.+|++++..   +..+|..|
T Consensus        64 ~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~-~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~---i~~kD~~~  139 (226)
T KOG4412|consen   64 KPDDKDDAGWTPLHIAASNGNDEVVKELLNRS-GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL---IRIKDKQG  139 (226)
T ss_pred             CCCCccccCCchhhhhhhcCcHHHHHHHhcCC-CCCcceecCCCcceehhhhcCChhhHHHHHHhcCCC---Cccccccc
Confidence            35667788999999999999999999999994 589999999999999999999999999999999877   88899999


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .||||-|+.-|.++++++|+..|+.++.+|.+|+||||.|..-|+.++.-.|+++|++++..|+.| ||+-+
T Consensus       140 qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~  210 (226)
T KOG4412|consen  140 QTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRI  210 (226)
T ss_pred             CchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988 88754

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=9.4e-29  Score=174.96  Aligned_cols=148  Identities=26%  Similarity=0.296  Sum_probs=101.5

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      |+|..+..|.||||.|+..|+.+++++|++.+  ..++..+..+.+|||+|+..|+.+++++|++.+...  .+..+..|
T Consensus        27 ~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g  102 (413)
T PHA02875         27 NPNFEIYDGISPIKLAMKFRDSEAIKLLMKHG--AIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA--DDVFYKDG  102 (413)
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc--cccccCCC
Confidence            55666677888888888888888888888876  455555566667777777777777777776665432  12334456


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~  174 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLII  174 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            677777777777777777777776666666666677777777777777777777777776677777777664

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=7.5e-29  Score=178.18  Aligned_cols=146  Identities=27%  Similarity=0.325  Sum_probs=135.3

Q ss_pred             Cccccccc-CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCC
Q 031607            2 DMDIDQTI-KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (156)
Q Consensus         2 ~~~~~~~~-~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (156)
                      |+|..+.. |.||||.|+..|+.++++.|++.+  ++++..+..|+||||+|+..++.+++++|++.+.+   ++.++..
T Consensus       159 din~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g--ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~---in~~d~~  233 (477)
T PHA02878        159 DINMKDRHKGNTALHYATENKDQRLTELLLSYG--ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS---TDARDKC  233 (477)
T ss_pred             CCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC---CCCCCCC
Confidence            57777887 999999999999999999999988  78889999999999999999999999999999887   7788999


Q ss_pred             CchHHHHHHhc-CCHHHHHHHHHcCCCCccCcC-CCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           81 GWAPIHSAASI-GNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        81 ~~~~l~~a~~~-~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      |.||||+|+.. ++.+++++|++.|++++.++. .|.||||+|  .++.+++++|+++|++++.+|..|.||||..
T Consensus       234 g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A  307 (477)
T PHA02878        234 GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSA  307 (477)
T ss_pred             CCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            99999999975 789999999999999998876 799999999  5678999999999999999999999999853

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=158.87  Aligned_cols=147  Identities=20%  Similarity=0.268  Sum_probs=122.2

Q ss_pred             cccccccCcHHHHHHHhcC--CHHHHHHHHHHHhhhhccCCC-CCCchHHHHHHHc---CChHHHHHHHhhccccccccc
Q 031607            3 MDIDQTIKDKDLFKAAETG--DSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASC---GHPEVVEILLSVDESANVVNA   76 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~--~~~~v~~ll~~~~~~~~~~~~-~~g~~~l~~A~~~---~~~~~~~~ll~~~~~~~~~~~   76 (156)
                      ++..+..|.||||.|+..+  +.++++.|++++  ++++.++ ..|+||||+|+..   +..+++++|++++.+   ++.
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~g--advn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad---in~  118 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENG--ADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS---ITE  118 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCC--CCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC---CCC
Confidence            4566778899999998754  889999999987  6777776 4789999988753   468899999988887   777


Q ss_pred             ccCCCchHHHHHHh--cCCHHHHHHHHHcCCCCccCcCCCCcHHHH-HHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           77 VDEEGWAPIHSAAS--IGNVTIVEMLLSKGADVNLKNDGGRTALHY-AASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        77 ~~~~~~~~l~~a~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ++..|.||||.|+.  .++.+++++|++.|++++.+|..|.||+|. +...++.+++++|+++|++++.+|..|+||++.
T Consensus       119 ~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~l  198 (209)
T PHA02859        119 EDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDL  198 (209)
T ss_pred             cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            88899999998875  357899999999999999889899999985 556778899999999999999999999999875


Q ss_pred             C
Q 031607          154 P  154 (156)
Q Consensus       154 ~  154 (156)
                      .
T Consensus       199 a  199 (209)
T PHA02859        199 I  199 (209)
T ss_pred             H
Confidence            3

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=3e-29  Score=176.64  Aligned_cols=147  Identities=30%  Similarity=0.342  Sum_probs=127.7

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCC-CCCchHHHHHHHcCChHHHHHHHhhcccccccccccCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~-~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (156)
                      +++.+|+.|.+.||+|+.+++++.+++|++++  +++|... .-+.||||+|+++|+..++.+|+++|++   ++.+|..
T Consensus        70 ~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~g--advn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAd---pt~~D~~  144 (600)
T KOG0509|consen   70 SVNNPDREGVTLLHWAAINNRLDVARYLISHG--ADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGAD---PTLKDKQ  144 (600)
T ss_pred             CCCCCCcCCccceeHHHHcCcHHHHHHHHHcC--CCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCC---CceecCC
Confidence            57788888999999999999999999999988  6777766 5678899999999999999999988888   6778889


Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccc-ccccccccC
Q 031607           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KACWLHSIA  153 (156)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~  153 (156)
                      |.+++|.|+.+++...+-+++..+++++.+|..|+|||++|+..+....+..|+.-|+.+...| +.|.||||-
T Consensus       145 G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHw  218 (600)
T KOG0509|consen  145 GLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHW  218 (600)
T ss_pred             CCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHH
Confidence            9999999999999999999998888899999999999999998888777888888888888887 889999884

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.6e-28  Score=163.56  Aligned_cols=135  Identities=20%  Similarity=0.158  Sum_probs=62.9

Q ss_pred             ccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCc-hHHHHHHHcCChHHHHHHHhhccccccccccc-CCC
Q 031607            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDR-TLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEG   81 (156)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~-~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~   81 (156)
                      +..+..|.||||.|+..|+.++++.|++.+  ++++.++..|+ ||||+|+..++.+++++|+..+...     .+ ..|
T Consensus        88 n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~g--adin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~-----~d~~~g  160 (284)
T PHA02791         88 SQFDDKGNTALYYAVDSGNMQTVKLFVKKN--WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-----FDLAIL  160 (284)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc-----cccccC
Confidence            333444444444444444444444444443  33333333332 4444444444444444444432210     11 124


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcH-HHHHHHCCCHHHHHHHHHcCCCCCcccc
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA-LHYAASKGWLKIVELLISRGAKINSKDK  145 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  145 (156)
                      .||||+|+..|+.+++++|+++|++++.++..|.+| ||+|+..|+.+++++|+++|++++.+|.
T Consensus       161 ~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        161 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             ccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence            455555555555555555555555555555444443 5555555555555555555555555554

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.9e-28  Score=174.35  Aligned_cols=148  Identities=24%  Similarity=0.353  Sum_probs=126.4

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      |++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+..   .+..+..|
T Consensus       116 d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~g--ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~---~n~~~~~g  190 (434)
T PHA02874        116 DVNIKDAELKTFLHYAIKKGDLESIKMLFEYG--ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY---ANVKDNNG  190 (434)
T ss_pred             CCCCCCCCCccHHHHHHHCCCHHHHHHHHhCC--CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC---CCCCCCCC
Confidence            56777888999999999999999999999987  77888889999999999999999999999988876   66678889


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCC-------------------------------ccCcCCCCcHHHHHHHCC-CHHH
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADV-------------------------------NLKNDGGRTALHYAASKG-WLKI  129 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~-------------------------------~~~~~~~~~~l~~a~~~~-~~~~  129 (156)
                      .||||+|+..++.+++++|++.|+++                               +.++..|.||||+|+..+ +.++
T Consensus       191 ~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~i  270 (434)
T PHA02874        191 ESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDI  270 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHH
Confidence            99999999999999999999887654                               444556778888888765 6789


Q ss_pred             HHHHHHcCCCCCcccccccccccCC
Q 031607          130 VELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       130 ~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      +++|+++|++++.+|..|.|||+..
T Consensus       271 v~~Ll~~gad~n~~d~~g~TpL~~A  295 (434)
T PHA02874        271 IDILLYHKADISIKDNKGENPIDTA  295 (434)
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999998753

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.3e-28  Score=163.02  Aligned_cols=138  Identities=18%  Similarity=0.181  Sum_probs=105.3

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC-chHHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIHS   87 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~~~l~~   87 (156)
                      .+.||||.|+..|+.++++.|++.+  ++++.+|..|+||||+|+..|+.+++++|+..+.+   ++.++..| .||||.
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~G--advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad---in~~~~~g~~TpL~~  134 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSG--MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYH  134 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cCccCCCCCcHHHHH
Confidence            3567777777777777777777766  66677777788888888888888888888877766   55555555 478888


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccCc-CCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccc-ccC
Q 031607           88 AASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLH-SIA  153 (156)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~-l~~  153 (156)
                      |+..++.+++++|++.+...  .+ ..|.||||+|++.|+.+++++|+++|++++.++..|.|| ||.
T Consensus       135 Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~  200 (284)
T PHA02791        135 AVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKL  200 (284)
T ss_pred             HHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHH
Confidence            88888888888888775432  12 246789999999999999999999999999998888887 653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=5.5e-28  Score=171.97  Aligned_cols=149  Identities=25%  Similarity=0.347  Sum_probs=96.8

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccc----------
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN----------   72 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~----------   72 (156)
                      ++..+..+.|||+.|++.|+.++|++|++.|  .+++..+..|.+|||+|+..|+.+++++|++.+.+..          
T Consensus        28 ~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~G--a~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~  105 (434)
T PHA02874         28 INISVDETTTPLIDAIRSGDAKIVELFIKHG--ADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKD  105 (434)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHH
Confidence            3455566777777777777777777777766  5555666666667777777666666666666553321          


Q ss_pred             ----------ccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCc
Q 031607           73 ----------VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS  142 (156)
Q Consensus        73 ----------~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~  142 (156)
                                .++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.
T Consensus       106 ~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~  185 (434)
T PHA02874        106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV  185 (434)
T ss_pred             HHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC
Confidence                      1233455666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccccccccccC
Q 031607          143 KDKACWLHSIA  153 (156)
Q Consensus       143 ~~~~~~t~l~~  153 (156)
                      ++..|.||||.
T Consensus       186 ~~~~g~tpL~~  196 (434)
T PHA02874        186 KDNNGESPLHN  196 (434)
T ss_pred             CCCCCCCHHHH
Confidence            66666666654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=5.9e-28  Score=173.78  Aligned_cols=147  Identities=29%  Similarity=0.330  Sum_probs=109.1

Q ss_pred             CcccccccCcHHHHHHHhcC--CHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccC
Q 031607            2 DMDIDQTIKDKDLFKAAETG--DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE   79 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~--~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~   79 (156)
                      |++..+..|.+|||.|+..|  +.++++.|++.+  .+++.++..|.||||+|+..|+.+++++|++.+.+   .+..+.
T Consensus       133 ~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g--~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~---~~~~~~  207 (480)
T PHA03100        133 NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG--VDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD---INAGDI  207 (480)
T ss_pred             CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCC--CCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC---ccCCCC
Confidence            45556666777777777777  777777777766  55666666777777777777777777777776665   444455


Q ss_pred             CC------chHHHHHHhcCC--HHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccc
Q 031607           80 EG------WAPIHSAASIGN--VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHS  151 (156)
Q Consensus        80 ~~------~~~l~~a~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (156)
                      .+      .|++|.|+..++  .+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||+
T Consensus       208 ~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl  287 (480)
T PHA03100        208 ETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL  287 (480)
T ss_pred             CCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHH
Confidence            55      677777777777  7778888887888888888888888888888888888888888888888888888887


Q ss_pred             cC
Q 031607          152 IA  153 (156)
Q Consensus       152 ~~  153 (156)
                      +.
T Consensus       288 ~~  289 (480)
T PHA03100        288 HI  289 (480)
T ss_pred             HH
Confidence            64

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=8.2e-28  Score=172.83  Aligned_cols=140  Identities=24%  Similarity=0.290  Sum_probs=88.6

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHh----------------------
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLS----------------------   66 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~----------------------   66 (156)
                      .+.+|||.|++.|+.++|++|++++  ++++.++..|+||||+||..|+.++++.|+.                      
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~g--advn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~  113 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRG--HNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRN  113 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCC
Confidence            4566677777777777777777665  5666666667777777666554433333332                      


Q ss_pred             ------------------------------------------hcccccccccccCC-CchHHHHHHhcCCHHHHHHHHHc
Q 031607           67 ------------------------------------------VDESANVVNAVDEE-GWAPIHSAASIGNVTIVEMLLSK  103 (156)
Q Consensus        67 ------------------------------------------~~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~l~~~  103 (156)
                                                                .|.+   ++..+.. |.||||+|+..++.+++++|++.
T Consensus       114 ~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gad---in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~  190 (477)
T PHA02878        114 VEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD---INMKDRHKGNTALHYATENKDQRLTELLLSY  190 (477)
T ss_pred             HHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCC---CCccCCCCCCCHHHHHHhCCCHHHHHHHHHC
Confidence                                                      2222   2333444 66777777777777777777766


Q ss_pred             CCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       104 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      |++++.++..|.||||.|+..++.+++++|+++|++++.+|..|.||||.
T Consensus       191 gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~  240 (477)
T PHA02878        191 GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHI  240 (477)
T ss_pred             CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            66666666666677777777777777777777777777677777777663

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.95  E-value=3e-27  Score=147.96  Aligned_cols=143  Identities=20%  Similarity=0.210  Sum_probs=124.7

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHH----HHHHHHhhhhccCCCCCCchHHHHHHHcCChHH---HHHHHhhccccccc
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFK----SLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEV---VEILLSVDESANVV   74 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~----~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~---~~~ll~~~~~~~~~   74 (156)
                      |++..+..+.+++|.|++.|+++.++    +|.+.+  ..++.+|..|+||||+|+..++.+.   +++|+..+.+   +
T Consensus        12 ~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g--~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad---i   86 (166)
T PHA02743         12 GAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDG--HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD---I   86 (166)
T ss_pred             HHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcc--hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC---C
Confidence            45667788889999999999995554    455555  6677889999999999999987654   7999999887   6


Q ss_pred             cccc-CCCchHHHHHHhcCCHHHHHHHHH-cCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccc
Q 031607           75 NAVD-EEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWL  149 (156)
Q Consensus        75 ~~~~-~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t  149 (156)
                      +.++ ..|.||||+|+..++.+++++|+. .|++++.++..|.||+++|+..++.+++++|+++|++++.++..|..
T Consensus        87 n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743         87 NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            7777 589999999999999999999995 79999999999999999999999999999999999999999988753

>PHA02946 ankyin-like protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=169.99  Aligned_cols=145  Identities=14%  Similarity=0.172  Sum_probs=95.9

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcC--ChHHHHHHHhhcccccccc-ccc
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVN-AVD   78 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~--~~~~~~~ll~~~~~~~~~~-~~~   78 (156)
                      |+|..+..|.||||.|++.|+.++++.|++++  ++++.+|..|.||||+|+..+  ..+++++|+..+.+   ++ ..+
T Consensus        64 dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G--Adin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gad---in~~~d  138 (446)
T PHA02946         64 SPNETDDDGNYPLHIASKINNNRIVAMLLTHG--ADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAK---INNSVD  138 (446)
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC---cccccC
Confidence            67888999999999999999999999999988  788999999999999998766  47888999988876   33 234


Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCC--CHHHHHHHHHcCCCCCccccccccccc
Q 031607           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVELLISRGAKINSKDKACWLHSI  152 (156)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (156)
                      ..|.|||+ |+..++.+++++|++.|++++.++..|.||+|+|+..+  ..+++++|+++|++++.+|..|.||||
T Consensus       139 ~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH  213 (446)
T PHA02946        139 EEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLH  213 (446)
T ss_pred             CCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            45555554 33334444444444444444444444444444444322  234444444444444444444444444

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=1.5e-27  Score=175.80  Aligned_cols=146  Identities=19%  Similarity=0.193  Sum_probs=98.2

Q ss_pred             CcccccccCcHHHHHHHhcCC--HHHHHHHHHHHhhhhccCCCCCCchHHHHHH--------------------------
Q 031607            2 DMDIDQTIKDKDLFKAAETGD--SSTFKSLSKQQLLKSLSLRNDDDRTLLHVAA--------------------------   53 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~--~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~--------------------------   53 (156)
                      |+|..+..|.||||.|++.|+  .++|+.|++.|  ++++.++..|+||||+|+                          
T Consensus       204 DVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~G--ADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~  281 (764)
T PHA02716        204 NVNLQNNHLITPLHTYLITGNVCASVIKKIIELG--GDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNI  281 (764)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccc
Confidence            566666677777777777764  36677777766  566667777777776542                          


Q ss_pred             -----------HcCChHHHHHHHhhcccccccccccCCCchHHHHHHh--cCCHHHHHHHHHcCCCCccCcCCCCcHHHH
Q 031607           54 -----------SCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS--IGNVTIVEMLLSKGADVNLKNDGGRTALHY  120 (156)
Q Consensus        54 -----------~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~  120 (156)
                                 ..|+.+++++|++.+.+   ++.++..|.||||+|+.  .++.+++++|++.|++++.+|..|.||||+
T Consensus       282 ~~~L~~~i~AA~~g~leiVklLLe~GAd---IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~  358 (764)
T PHA02716        282 PMILHSYITLARNIDISVVYSFLQPGVK---LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHT  358 (764)
T ss_pred             hhhhHHHHHHHHcCCHHHHHHHHhCCCc---eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHH
Confidence                       33455666666666655   55666677777776653  346677777777777777777777777776


Q ss_pred             HHH--------------CCCHHHHHHHHHcCCCCCccccccccccc
Q 031607          121 AAS--------------KGWLKIVELLISRGAKINSKDKACWLHSI  152 (156)
Q Consensus       121 a~~--------------~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (156)
                      |+.              .++.+++++|+++|++++.+|..|+||||
T Consensus       359 A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh  404 (764)
T PHA02716        359 YLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT  404 (764)
T ss_pred             HHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence            654              24567777777777777777777777776

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.5e-27  Score=166.98  Aligned_cols=146  Identities=22%  Similarity=0.315  Sum_probs=113.3

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      ++..+..+.+|||.|++.|+.+.+++|++.+. ...+..+..|.||||+|+..|+.+++++|++.|.+   ++..+..|.
T Consensus        61 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad---~~~~~~~g~  136 (413)
T PHA02875         61 PDVKYPDIESELHDAVEEGDVKAVEELLDLGK-FADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD---PDIPNTDKF  136 (413)
T ss_pred             ccccCCCcccHHHHHHHCCCHHHHHHHHHcCC-cccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCCCC
Confidence            34455667788888888888888888888762 22233456688888888888888888888888776   566677788


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccc-cccc
Q 031607           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW-LHSI  152 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~-t~l~  152 (156)
                      ||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|
T Consensus       137 tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~  207 (413)
T PHA02875        137 SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALC  207 (413)
T ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHH
Confidence            888888888888888888888888888888888888888888888888888888888888877764 5555

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.3e-27  Score=170.72  Aligned_cols=147  Identities=26%  Similarity=0.393  Sum_probs=125.3

Q ss_pred             CcccccccCcHHHHHHH--hcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcC--ChHHHHHHHhhcccccccccc
Q 031607            2 DMDIDQTIKDKDLFKAA--ETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAV   77 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~--~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~--~~~~~~~ll~~~~~~~~~~~~   77 (156)
                      |++..+..|.||||.|+  ..|+.+++++|++.+  .+++..+..|.||||+|+..+  +.+++++|++.+.+   ++.+
T Consensus        98 ~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d---in~~  172 (480)
T PHA03100         98 NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG--ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD---INAK  172 (480)
T ss_pred             CCCCCCCCCCchhhHHHhcccChHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC---cccc
Confidence            45667778888888888  888888888888887  677778888888999888888  88888888888877   6667


Q ss_pred             cCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCC------CcHHHHHHHCCC--HHHHHHHHHcCCCCCcccccccc
Q 031607           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG------RTALHYAASKGW--LKIVELLISRGAKINSKDKACWL  149 (156)
Q Consensus        78 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~l~~a~~~~~--~~~~~~Ll~~g~~~~~~~~~~~t  149 (156)
                      +..|.||||+|+..++.+++++|++.|++++..+..+      .+|++.|+..++  .+++++|+++|++++.+|..|.|
T Consensus       173 d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~T  252 (480)
T PHA03100        173 NRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFT  252 (480)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCC
Confidence            7788889999988888888998888888888887777      788888888888  88999999999999999999999


Q ss_pred             cccC
Q 031607          150 HSIA  153 (156)
Q Consensus       150 ~l~~  153 (156)
                      |||.
T Consensus       253 pL~~  256 (480)
T PHA03100        253 PLHY  256 (480)
T ss_pred             HHHH
Confidence            9875

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=2.8e-27  Score=174.33  Aligned_cols=147  Identities=20%  Similarity=0.228  Sum_probs=131.0

Q ss_pred             Ccccc-cccCcHHHHHHHhc--CCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCC--hHHHHHHHhhccccccccc
Q 031607            2 DMDID-QTIKDKDLFKAAET--GDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH--PEVVEILLSVDESANVVNA   76 (156)
Q Consensus         2 ~~~~~-~~~~~~~l~~a~~~--~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~--~~~~~~ll~~~~~~~~~~~   76 (156)
                      |+|.. +..|.||||.|+..  ++.+++++|+++|  ++++.+|..|.||||+|+..|+  .+++++|++.|++   ++.
T Consensus       168 DIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~G--ADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD---VN~  242 (764)
T PHA02716        168 NLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNG--VNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD---MDM  242 (764)
T ss_pred             CcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC---CCC
Confidence            67777 88899999998654  6789999999998  7899999999999999999995  4899999999988   778


Q ss_pred             ccCCCchHHHHH-------------------------------------HhcCCHHHHHHHHHcCCCCccCcCCCCcHHH
Q 031607           77 VDEEGWAPIHSA-------------------------------------ASIGNVTIVEMLLSKGADVNLKNDGGRTALH  119 (156)
Q Consensus        77 ~~~~~~~~l~~a-------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~  119 (156)
                      ++..|.||||.|                                     +..++.+++++|++.|++++.+|..|.||||
T Consensus       243 kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH  322 (764)
T PHA02716        243 KCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLH  322 (764)
T ss_pred             CCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHH
Confidence            899999999975                                     3347788999999999999999999999999


Q ss_pred             HHHH--CCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          120 YAAS--KGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       120 ~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      +|+.  .++.+++++|+++|++++.+|..|+||||.
T Consensus       323 ~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~  358 (764)
T PHA02716        323 QYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHT  358 (764)
T ss_pred             HHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHH
Confidence            8764  467899999999999999999999999984

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2e-26  Score=149.16  Aligned_cols=138  Identities=20%  Similarity=0.229  Sum_probs=122.4

Q ss_pred             ccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcC--ChHHHHHHHhhccccccccccc-CCCchH
Q 031607            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAVD-EEGWAP   84 (156)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~--~~~~~~~ll~~~~~~~~~~~~~-~~~~~~   84 (156)
                      +...+||+.|++.|+++.|+.|++.     .+..+..|.||||+|+..+  +.+++++|++.+.+   ++.++ ..|.||
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad---vn~~~~~~g~Tp   90 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD---VNFKTRDNNLSA   90 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC---CCccCCCCCCCH
Confidence            4468899999999999999999864     3456888999999999865  89999999999988   66665 489999


Q ss_pred             HHHHHhc---CCHHHHHHHHHcCCCCccCcCCCCcHHHHHHH--CCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           85 IHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTALHYAAS--KGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        85 l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ||+|+..   ++.+++++|+++|++++.++..|.||+|.|+.  .++.+++++|+++|++++.+|..|.||||.
T Consensus        91 Lh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~  164 (209)
T PHA02859         91 LHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYS  164 (209)
T ss_pred             HHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHH
Confidence            9998754   47999999999999999999999999999886  467999999999999999999999999984

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.5e-26  Score=166.77  Aligned_cols=148  Identities=20%  Similarity=0.282  Sum_probs=119.4

Q ss_pred             CcccccccCcHHHHHHHhcC---CHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCC---hHHHHHHHhhcccccccc
Q 031607            2 DMDIDQTIKDKDLFKAAETG---DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH---PEVVEILLSVDESANVVN   75 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~---~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~---~~~~~~ll~~~~~~~~~~   75 (156)
                      |+|..+..|.||||.|+..+   +.+++++|+++|  ++++.+|..|.||||+|+..++   .+++++|++.|.+   ++
T Consensus       101 diN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~G--advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad---in  175 (489)
T PHA02798        101 DINKKNSDGETPLYCLLSNGYINNLEILLFMIENG--ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD---IN  175 (489)
T ss_pred             CCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC---cc
Confidence            67777888888888888875   678888888887  6778888888888888888877   8888888888776   44


Q ss_pred             cc-cCCCchHHHHHHhc----CCHHHHHHHHHcCCC---------------------------------------CccCc
Q 031607           76 AV-DEEGWAPIHSAASI----GNVTIVEMLLSKGAD---------------------------------------VNLKN  111 (156)
Q Consensus        76 ~~-~~~~~~~l~~a~~~----~~~~~~~~l~~~~~~---------------------------------------~~~~~  111 (156)
                      .. +..|.||+|.++..    ++.+++++|++.|++                                       ++.+|
T Consensus       176 ~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d  255 (489)
T PHA02798        176 THNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVD  255 (489)
T ss_pred             cccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcC
Confidence            44 34677888877653    367777777776653                                       33456


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607          112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       112 ~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      ..|.||||+|+..++.+++++|+++|++++.++..|.|||+.+
T Consensus       256 ~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A  298 (489)
T PHA02798        256 ELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA  298 (489)
T ss_pred             cCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHH
Confidence            6799999999999999999999999999999999999999853

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=5.2e-27  Score=165.48  Aligned_cols=141  Identities=34%  Similarity=0.456  Sum_probs=131.5

Q ss_pred             CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccccc-CCCchHHHHH
Q 031607           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSA   88 (156)
Q Consensus        10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~l~~a   88 (156)
                      ....++.|+..|+++.++.+++.. +..++..|.+|.++||+|+.+++.+++++|++++++   ++... ..+.||||+|
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gad---vn~~gG~l~stPLHWA  119 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGAD---VNAIGGVLGSTPLHWA  119 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCC---ccccCCCCCCCcchHH
Confidence            466899999999999999999983 378888899999999999999999999999999998   55555 6789999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      +++|++.++++|+++|++++++|.+|.+|+|.|++.++.-.+-+|+.+|++++.+|.+|+||||-+
T Consensus       120 ar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwA  185 (600)
T KOG0509|consen  120 ARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWA  185 (600)
T ss_pred             HHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999853

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.5e-26  Score=165.02  Aligned_cols=147  Identities=22%  Similarity=0.233  Sum_probs=117.5

Q ss_pred             CcccccccCcHHHHHHHhcC---CHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcC-ChHHHHHHHhhcccccccccc
Q 031607            2 DMDIDQTIKDKDLFKAAETG---DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG-HPEVVEILLSVDESANVVNAV   77 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~---~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~-~~~~~~~ll~~~~~~~~~~~~   77 (156)
                      |+|..+..|.||||.|+..+   +.++++.|++.|  ++++.++..|.||||+|+..+ ..+++++|++.+.+   ++.+
T Consensus        39 ~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~G--adin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~---in~~  113 (471)
T PHA03095         39 DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAG--ADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD---VNAK  113 (471)
T ss_pred             CcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCC---CCCC
Confidence            56777888888888888888   888888888877  777888888888888888888 58888888888777   6777


Q ss_pred             cCCCchHHHHHH--hcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCC--CHHHHHHHHHcCCCCCcccccccccccC
Q 031607           78 DEEGWAPIHSAA--SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        78 ~~~~~~~l~~a~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      +..|.||||+|+  ..++.+++++|++.|++++.++..|.||+|+++..+  ..+++++|+++|++++..+..|.||||.
T Consensus       114 ~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~  193 (471)
T PHA03095        114 DKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHH  193 (471)
T ss_pred             CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            778888888888  456778888888888888888888888888777755  4677777777777777777777777763

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.4e-26  Score=165.83  Aligned_cols=148  Identities=16%  Similarity=0.204  Sum_probs=128.1

Q ss_pred             CcccccccCcHHHHHHHhc---CCHHHHHHHHHHHhhhhc-cCCCCCCchHHHHHHHc--CChHHHHHHHhhcccccccc
Q 031607            2 DMDIDQTIKDKDLFKAAET---GDSSTFKSLSKQQLLKSL-SLRNDDDRTLLHVAASC--GHPEVVEILLSVDESANVVN   75 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~---~~~~~v~~ll~~~~~~~~-~~~~~~g~~~l~~A~~~--~~~~~~~~ll~~~~~~~~~~   75 (156)
                      |+|..+..|.|||+.|+..   ++.++++.|+++|  +++ +.++..|+||||+|+..  ++.+++++|++.|.+   ++
T Consensus       100 din~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G--adin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad---i~  174 (494)
T PHA02989        100 DINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKG--INVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN---LF  174 (494)
T ss_pred             CCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCC--CCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC---cc
Confidence            6888899999999988765   6899999999998  788 78899999999999865  588999999999987   44


Q ss_pred             c-ccCCCchHHHHHHhc----CCHHHHHHHHHcCCCCcc--------------------------------------CcC
Q 031607           76 A-VDEEGWAPIHSAASI----GNVTIVEMLLSKGADVNL--------------------------------------KND  112 (156)
Q Consensus        76 ~-~~~~~~~~l~~a~~~----~~~~~~~~l~~~~~~~~~--------------------------------------~~~  112 (156)
                      . .+..|.||+|+|+..    ++.+++++|++.|++++.                                      +|.
T Consensus       175 ~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~  254 (494)
T PHA02989        175 EKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDK  254 (494)
T ss_pred             ccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCC
Confidence            4 567899999998765    488999999988876543                                      445


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607          113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       113 ~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      .|.||||+|+..++.+++++|+++|++++.+|..|.||||..
T Consensus       255 ~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A  296 (494)
T PHA02989        255 KGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYA  296 (494)
T ss_pred             CCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            689999999999999999999999999999999999999853

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=6.4e-26  Score=171.52  Aligned_cols=144  Identities=24%  Similarity=0.312  Sum_probs=121.4

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      |+|..+..|.||||.|+..|+.++++.|++.+  .+++.+|..|+||||+|+..|+.+++++|+..+...     ....+
T Consensus       550 d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g--adin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~-----~~~~~  622 (823)
T PLN03192        550 DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHA--CNVHIRDANGNTALWNAISAKHHKIFRILYHFASIS-----DPHAA  622 (823)
T ss_pred             CCCCCCCCCCCHHHHHHHcChHHHHHHHHhcC--CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCccc-----CcccC
Confidence            67777888888888888888888888888876  677788888888888888888888888888655431     12346


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccc-ccccc
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC-WLHSI  152 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~-~t~l~  152 (156)
                      .++|+.|+..++.++++.|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..| .||+.
T Consensus       623 ~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~  694 (823)
T PLN03192        623 GDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTE  694 (823)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHH
Confidence            678889999999999999999999999999999999999999999999999999999999999888 77753

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.5e-25  Score=167.12  Aligned_cols=147  Identities=24%  Similarity=0.325  Sum_probs=105.9

Q ss_pred             CcccccccCcHHHHHHHhc-CCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCC
Q 031607            2 DMDIDQTIKDKDLFKAAET-GDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~-~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (156)
                      |++..+..|.||||.|+.. ++.++++.|++.+  .+++.+|..|+||||+|+..++.+++++|++.+.+   ++..+..
T Consensus       333 din~~d~~g~TpLh~A~~~~~~~~iv~lLl~~g--adin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad---~~~~~~~  407 (682)
T PHA02876        333 DVNAADRLYITPLHQASTLDRNKDIVITLLELG--ANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD---IEALSQK  407 (682)
T ss_pred             CCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcC--CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---ccccCCC
Confidence            3445555566666666553 3455555555555  56667777777777777777777777777777766   5556667


Q ss_pred             CchHHHHHHhcCC-HHHHHHHHHcCCCCccCcCCCCcHHHHHHHCC-CHHHHHHHHHcCCCCCcccccccccccC
Q 031607           81 GWAPIHSAASIGN-VTIVEMLLSKGADVNLKNDGGRTALHYAASKG-WLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        81 ~~~~l~~a~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      |.|+||+|+..++ ..++++|++.|++++.+|..|.||||+|+..+ ..+++++|+++|++++.+|..|.||++.
T Consensus       408 g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~  482 (682)
T PHA02876        408 IGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLI  482 (682)
T ss_pred             CCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            7777777776544 45677778888888888888888888888866 5788888888888888888888888864

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=5.1e-26  Score=164.23  Aligned_cols=147  Identities=33%  Similarity=0.386  Sum_probs=135.1

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      +|..|..|-||||+|++.|.+++++.|+..|  ++++.++.++.||||.|++.|++.+++.|++ -.+..+.+..|..|.
T Consensus       266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~G--a~I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~rllne~D~~g~  342 (929)
T KOG0510|consen  266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFG--ASINSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTRLLNESDLHGM  342 (929)
T ss_pred             hhcccccCCchHHHHHHcCChhHHHHHHHcC--CcccccCCCCCCchHHHHHcccHHHHHHHHh-CcCccccccccccCC
Confidence            4566788999999999999999999999998  8899999999999999999999999999998 334445778899999


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCc---cCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccccc
Q 031607           83 APIHSAASIGNVTIVEMLLSKGADVN---LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSI  152 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (156)
                      ||+|.|+..|+..+++.|++.|+...   ..|.+|.||||.|+..|+..++++|+.+|+++..+|+.|.++++
T Consensus       343 tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  343 TPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             CchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccccccccc
Confidence            99999999999999999999998876   34889999999999999999999999999999999999999887

>PHA02741 hypothetical protein; Provisional

Probab=99.94  E-value=5e-25  Score=138.44  Aligned_cols=136  Identities=18%  Similarity=0.253  Sum_probs=120.1

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHH----hhhhccCCCCCCchHHHHHHHcCC----hHHHHHHHhhccccccc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQ----LLKSLSLRNDDDRTLLHVAASCGH----PEVVEILLSVDESANVV   74 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~----~~~~~~~~~~~g~~~l~~A~~~~~----~~~~~~ll~~~~~~~~~   74 (156)
                      ++..+..|.++||.|++.|+.+.++.|+...    .+.+++.+|..|+||||+|+..++    .+++++|+..+.+   +
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad---i   90 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD---I   90 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC---C
Confidence            4567888999999999999999999986531    236788999999999999999998    5889999998877   6


Q ss_pred             ccccC-CCchHHHHHHhcCCHHHHHHHHH-cCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCC
Q 031607           75 NAVDE-EGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN  141 (156)
Q Consensus        75 ~~~~~-~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~  141 (156)
                      +.++. .|.||||+|+..++.+++++|+. .+++++.++..|.||+++|...++.+++++|++.++...
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~~  159 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATSR  159 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence            77774 89999999999999999999997 589999999999999999999999999999999876543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=2e-25  Score=155.56  Aligned_cols=146  Identities=14%  Similarity=0.082  Sum_probs=127.9

Q ss_pred             cccccCcHHHHHHHh--cCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccc---ccC
Q 031607            5 IDQTIKDKDLFKAAE--TGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA---VDE   79 (156)
Q Consensus         5 ~~~~~~~~~l~~a~~--~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~---~~~   79 (156)
                      ..+....++||+++.  .|++++|++|+++|  ++++..  ++.||+|.|+..++.+++++|+.+|.+......   .+.
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~G--ADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~  186 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHG--AVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKI  186 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCC--CCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhh
Confidence            355668999999999  89999999999999  676653  458999999999999999999999864211111   123


Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        80 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      .+.+++|.|...++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||.+
T Consensus       187 ~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~A  261 (437)
T PHA02795        187 IQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVA  261 (437)
T ss_pred             hccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            477899999999999999999999999999999999999999999999999999999999999999999999864

>PHA02946 ankyin-like protein; Provisional

Probab=99.93  E-value=2.1e-25  Score=158.56  Aligned_cols=145  Identities=17%  Similarity=0.192  Sum_probs=129.0

Q ss_pred             CcccccccCcHHHHHHHhcC--CHHHHHHHHHHHhhhhccC-CCCCCchHHHHHHHcCChHHHHHHHhhccccccccccc
Q 031607            2 DMDIDQTIKDKDLFKAAETG--DSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD   78 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~--~~~~v~~ll~~~~~~~~~~-~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~   78 (156)
                      |+|..+..|.||||+|+..+  .+++++.|++++  ++++. .+..|.|||| ||..++.+++++|++.+.+   ++.++
T Consensus        97 din~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~G--adin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad---~~~~d  170 (446)
T PHA02946         97 DPNACDKQHKTPLYYLSGTDDEVIERINLLVQYG--AKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE---ARIVD  170 (446)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcC--CCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc---ccccC
Confidence            67888999999999998876  489999999988  66764 5889999997 6777999999999999877   77889


Q ss_pred             CCCchHHHHHHhcC--CHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCC--CHHHHHHHHHcCCCCCcccccccccccC
Q 031607           79 EEGWAPIHSAASIG--NVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        79 ~~~~~~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ..|.||||.|+..+  +.+++++|++.|++++.+|..|.||||+|+..+  +.+++++|++ |++++.+|..|.||||.
T Consensus       171 ~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~  248 (446)
T PHA02946        171 KFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTL  248 (446)
T ss_pred             CCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHH
Confidence            99999999988754  578999999999999999999999999999976  7889999885 99999999999999985

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=3e-25  Score=159.44  Aligned_cols=146  Identities=25%  Similarity=0.257  Sum_probs=100.5

Q ss_pred             CcccccccCcHHHHHHHhcC-CHHHHHHHHHHHhhhhccCCCCCCchHHHHHH--HcCChHHHHHHHhhccccccccccc
Q 031607            2 DMDIDQTIKDKDLFKAAETG-DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAA--SCGHPEVVEILLSVDESANVVNAVD   78 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~-~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~--~~~~~~~~~~ll~~~~~~~~~~~~~   78 (156)
                      |+|..+..|.||||.|+..| ..++++.|++.+  ++++.++..|+||||+|+  ..++.+++++|++.+.+   ++..+
T Consensus        75 din~~~~~g~TpLh~A~~~~~~~~iv~lLl~~g--a~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad---~~~~d  149 (471)
T PHA03095         75 DVNAPERCGFTPLHLYLYNATTLDVIKLLIKAG--ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD---VNALD  149 (471)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcC--CCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC---CCccC
Confidence            67778888999999999998 588888888887  678888888899999988  44577888888888776   55666


Q ss_pred             CCCchHHHHHHhcC--CHHHHHHHHHcCCCCccCcCCCCcHHHHHHHC--CCHHHHHHHHHcCCCCCccccccccccc
Q 031607           79 EEGWAPIHSAASIG--NVTIVEMLLSKGADVNLKNDGGRTALHYAASK--GWLKIVELLISRGAKINSKDKACWLHSI  152 (156)
Q Consensus        79 ~~~~~~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (156)
                      ..|.||||+|+..+  +.+++++|++.|++++..+..|.||+|+++..  +..++++.|+++|++++.+|..|.||||
T Consensus       150 ~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh  227 (471)
T PHA03095        150 LYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLH  227 (471)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            67777777666543  45666666666665555555555565555543  3445555555555555555555555544

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=4.7e-25  Score=164.47  Aligned_cols=146  Identities=30%  Similarity=0.338  Sum_probs=92.4

Q ss_pred             cccccccCcHHHHHHHhcC-CHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcC-ChHHHHHHHhhcccccccccccCC
Q 031607            3 MDIDQTIKDKDLFKAAETG-DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG-HPEVVEILLSVDESANVVNAVDEE   80 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~-~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~-~~~~~~~ll~~~~~~~~~~~~~~~   80 (156)
                      ++..+..|.||||.|+..| +.+.++.|+..+  ++++..+..|+||||+|+..+ ..+++..|++.+.+   ++.++..
T Consensus       300 in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g--adin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad---in~~d~~  374 (682)
T PHA02876        300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLG--ADVNAADRLYITPLHQASTLDRNKDIVITLLELGAN---VNARDYC  374 (682)
T ss_pred             CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcC--CCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC---CccCCCC
Confidence            4444555555555555555 355555555544  445555555555555555532 45555666655555   5556667


Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCC-HHHHHHHHHcCCCCCcccccccccccC
Q 031607           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      |.||||+|+..++.+++++|++.|++++..+..|.||||+|+..+. ..++++|+++|++++.+|..|.||||.
T Consensus       375 G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~  448 (682)
T PHA02876        375 DKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHY  448 (682)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHH
Confidence            7777777777777777777777777777777777777777766554 356777777777777777777777774

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=7.2e-25  Score=161.52  Aligned_cols=147  Identities=18%  Similarity=0.155  Sum_probs=119.4

Q ss_pred             cccccccCcHHHHHHHhc---CCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCC----------------------
Q 031607            3 MDIDQTIKDKDLFKAAET---GDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH----------------------   57 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~---~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~----------------------   57 (156)
                      ++..+..|.||||.|+..   |+.++++.|++.|  ++++.++..|+||||+|+..|+                      
T Consensus        25 ~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g--a~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~  102 (661)
T PHA02917         25 NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSG--TNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND  102 (661)
T ss_pred             ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCC--CCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC
Confidence            455688999999997655   8899999999988  7888889999999998887654                      


Q ss_pred             -------------hHHHHHHHhhcccccccccccCCCchHHHHHH--hcCCHHHHHHHHHcCCCCccCcC---CC-----
Q 031607           58 -------------PEVVEILLSVDESANVVNAVDEEGWAPIHSAA--SIGNVTIVEMLLSKGADVNLKND---GG-----  114 (156)
Q Consensus        58 -------------~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~l~~~~~~~~~~~~---~~-----  114 (156)
                                   .+++++|++.|.+   ++.++..|.|||+.++  ..++.+++++|+++|++++.++.   .|     
T Consensus       103 ~~~~~~~a~~~~~~e~vk~Ll~~Gad---in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~  179 (661)
T PHA02917        103 FNIFSYMKSKNVDVDLIKVLVEHGFD---LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDD  179 (661)
T ss_pred             cchHHHHHhhcCCHHHHHHHHHcCCC---CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccc
Confidence                         3445555555555   6677889999998653  46899999999999999876543   23     


Q ss_pred             ------CcHHHHHHH-----------CCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607          115 ------RTALHYAAS-----------KGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       115 ------~~~l~~a~~-----------~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                            .||||+|+.           .++.+++++|+++|++++.+|.+|.||||..
T Consensus       180 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A  236 (661)
T PHA02917        180 YQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYY  236 (661)
T ss_pred             ccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHH
Confidence                  599999975           4578999999999999999999999999863

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=3.6e-25  Score=159.94  Aligned_cols=150  Identities=30%  Similarity=0.357  Sum_probs=131.0

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhh-------------hhccCCCCCCchHHHHHHHcCChHHHHHHHhhc
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL-------------KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVD   68 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~-------------~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~   68 (156)
                      ++|..+..+.+|||.|+..|++++++.+++.+..             .-++..|.+|.||||+||+.|.++.++.|+..|
T Consensus       217 ~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~G  296 (929)
T KOG0510|consen  217 HINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFG  296 (929)
T ss_pred             ccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcC
Confidence            5788899999999999999999999999885421             225567888999999999999999999999999


Q ss_pred             ccccccccccCCCchHHHHHHhcCCHHHHHHHHH-cC-CCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCC---cc
Q 031607           69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS-KG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN---SK  143 (156)
Q Consensus        69 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~---~~  143 (156)
                      .+   ++.++.++.||||.|+.+|++.+++.|++ .+ ...+..|..|.||+|.|++.|+..+++.|++.|+...   .+
T Consensus       297 a~---I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~  373 (929)
T KOG0510|consen  297 AS---INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEA  373 (929)
T ss_pred             Cc---ccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhccccc
Confidence            88   78888999999999999999999999998 33 4467778889999999999999999999999999887   57


Q ss_pred             cccccccccCC
Q 031607          144 DKACWLHSIAP  154 (156)
Q Consensus       144 ~~~~~t~l~~~  154 (156)
                      |.+|.||||..
T Consensus       374 D~dg~TaLH~A  384 (929)
T KOG0510|consen  374 DSDGNTALHLA  384 (929)
T ss_pred             ccCCchhhhHH
Confidence            99999999864

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=2.3e-25  Score=152.91  Aligned_cols=142  Identities=30%  Similarity=0.369  Sum_probs=131.6

Q ss_pred             cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (156)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ...|-+||-.|.-.|.+++|+.|++++  +++|.......|||..||.-|+.+++++|++++.+   ++..++.|.|.||
T Consensus        81 ~IegappLWaAsaAGHl~vVk~L~~~g--a~VN~tT~TNStPLraACfDG~leivKyLvE~gad---~~IanrhGhTcLm  155 (615)
T KOG0508|consen   81 TIEGAPPLWAASAAGHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGAD---PEIANRHGHTCLM  155 (615)
T ss_pred             ccCCCchhhHHhccCcHHHHHHHHHhc--CccccccccCCccHHHHHhcchhHHHHHHHHcCCC---CcccccCCCeeEE
Confidence            446889999999999999999999999  88888888888999999999999999999999998   6667889999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      +|+..|+.+++++|++.|++++.++..|.|+||.|+..|+.+++++|+.+|+.+ .+|.+|+|||...
T Consensus       156 Ia~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i-~~d~~GmtPL~~A  222 (615)
T KOG0508|consen  156 IACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI-DVDGHGMTPLLLA  222 (615)
T ss_pred             eeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCcee-eecCCCCchHHHH
Confidence            999999999999999999999999999999999999999999999999999998 5677899999754

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.92  E-value=1.7e-24  Score=134.23  Aligned_cols=136  Identities=15%  Similarity=0.201  Sum_probs=111.4

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHh---hhhccCCCCCCchHHHHHHHcCCh---HHHHHHHhhccccccccc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQL---LKSLSLRNDDDRTLLHVAASCGHP---EVVEILLSVDESANVVNA   76 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~---~~~~~~~~~~g~~~l~~A~~~~~~---~~~~~ll~~~~~~~~~~~   76 (156)
                      .+.++..|.||||+|++.|++..+........   +..+..+|..|.||||+|+..++.   +++++|+..+.+   ++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad---in~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD---ING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC---ccc
Confidence            34567789999999999998533322211110   112345688999999999999976   468899998877   677


Q ss_pred             cc-CCCchHHHHHHhcCCHHHHHHHHH-cCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCC
Q 031607           77 VD-EEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN  141 (156)
Q Consensus        77 ~~-~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~  141 (156)
                      ++ ..|.||||+|+..++.+++++|+. .|++++.++..|.||+++|+..++.+++++|+++|++.+
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            77 589999999999999999999997 489999999999999999999999999999999998875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=5.6e-24  Score=161.10  Aligned_cols=139  Identities=23%  Similarity=0.264  Sum_probs=127.5

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (156)
                      ...++|+.|+..|+.+.++.|++.+  .+++..|..|.||||+|+..|+.+++++|++++.+   ++.++..|.||||.|
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G--~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad---in~~d~~G~TpL~~A  598 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN---VHIRDANGNTALWNA  598 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC---CCCcCCCCCCHHHHH
Confidence            4578999999999999999999988  78899999999999999999999999999999887   778899999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      +..++.+++++|++.+...+.  ..+.++|+.|+..|+.+++++|+++|++++.+|..|.||||..
T Consensus       599 ~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A  662 (823)
T PLN03192        599 ISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA  662 (823)
T ss_pred             HHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            999999999999987765443  3466899999999999999999999999999999999999864

>PHA02798 ankyrin-like protein; Provisional

Probab=99.91  E-value=8e-24  Score=152.63  Aligned_cols=137  Identities=20%  Similarity=0.262  Sum_probs=105.0

Q ss_pred             CcccccccCcHHHHHHHhc-----CCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcC---ChHHHHHHHhhcccccc
Q 031607            2 DMDIDQTIKDKDLFKAAET-----GDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG---HPEVVEILLSVDESANV   73 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~-----~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~---~~~~~~~ll~~~~~~~~   73 (156)
                      |+|..+..|.|||+.|+..     +..++++.|++.|  ++++.++..|.||||+|+..+   +.+++++|+++|++   
T Consensus        63 dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~G--adiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad---  137 (489)
T PHA02798         63 NVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENG--ADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD---  137 (489)
T ss_pred             CCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCC--CCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC---
Confidence            5777778888888887754     5678888888877  678888888888888888765   67888888888777   


Q ss_pred             cccccCCCchHHHHHHhcCC---HHHHHHHHHcCCCCccCc-CCCCcHHHHHHHC----CCHHHHHHHHHcCCCCCcc
Q 031607           74 VNAVDEEGWAPIHSAASIGN---VTIVEMLLSKGADVNLKN-DGGRTALHYAASK----GWLKIVELLISRGAKINSK  143 (156)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~---~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~~----~~~~~~~~Ll~~g~~~~~~  143 (156)
                      ++.++..|.||||+|+..++   .+++++|++.|++++.++ ..+.||+|.+...    ++.+++++|+++|++++..
T Consensus       138 vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~  215 (489)
T PHA02798        138 TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKE  215 (489)
T ss_pred             ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccC
Confidence            66777888888888888776   888888888888887764 3577888877654    3677888888777655443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=2.2e-24  Score=143.89  Aligned_cols=146  Identities=28%  Similarity=0.340  Sum_probs=131.0

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHc-----CChHHHHHHHhhcccccccccc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC-----GHPEVVEILLSVDESANVVNAV   77 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~-----~~~~~~~~ll~~~~~~~~~~~~   77 (156)
                      +|+-|++|+|+||+++..+++++|+.||+.+ -.+++..+.-|+||+++++..     .+..++..|+..+.    +|.+
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn----VNaK  335 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD----VNAK  335 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccC-cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC----cchh
Confidence            6889999999999999999999999999998 478888899999999999853     35678888887754    4433


Q ss_pred             -cCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHc-CCCCCcccccccccccC
Q 031607           78 -DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKACWLHSIA  153 (156)
Q Consensus        78 -~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~  153 (156)
                       ...|.|+|+.|+.+|+.++++.|+.-|+++|.+|..|.|+|+.|+.+|+.+++++|+.. ++++...|.+|-|+|++
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~I  413 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSI  413 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhh
Confidence             45799999999999999999999999999999999999999999999999999999886 89999999999999875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=1.9e-24  Score=135.50  Aligned_cols=138  Identities=25%  Similarity=0.274  Sum_probs=76.7

Q ss_pred             cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (156)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +-.+.+++.+++.+..++.+..+.+..    +|..|+.|+|||.+|+.+|+.+++++|++.|.+   +........++|+
T Consensus       126 s~~p~s~~slsVhql~L~~~~~~~~n~----VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd---p~~lgk~resALs  198 (296)
T KOG0502|consen  126 SLMPWSPLSLSVHQLHLDVVDLLVNNK----VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD---PDALGKYRESALS  198 (296)
T ss_pred             ccccCChhhHHHHHHHHHHHHHHhhcc----ccCccccCchHhHHHHhcCchHHHHHHHHcCCC---hhhhhhhhhhhHh
Confidence            334555555555555555554444433    445555555555555555555555555555555   2333344555555


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccc
Q 031607           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHS  151 (156)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (156)
                      .|+..|..+++++|+.++.++|..|+.|.|||-+|++.++.+|++.|+..|++++.-+..|++++
T Consensus       199 LAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~m  263 (296)
T KOG0502|consen  199 LATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIM  263 (296)
T ss_pred             HHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHH
Confidence            55555555555555555555555555555555555555555555555555555555555555543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.9e-23  Score=149.92  Aligned_cols=144  Identities=19%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             CcccccccCcHHHHHHHhcC--CHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcC------ChHHHHHHHhhcccccc
Q 031607            2 DMDIDQTIKDKDLFKAAETG--DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG------HPEVVEILLSVDESANV   73 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~--~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~------~~~~~~~ll~~~~~~~~   73 (156)
                      |+|.. ..|.++++.++..+  +.++|+.|++.|  ++++.++ .+.||||.|+..+      ..+++++|++.|++   
T Consensus        28 dvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~G--Advn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gad---  100 (494)
T PHA02989         28 DVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNG--ADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGAD---  100 (494)
T ss_pred             Ccccc-cCCCCHHHHHHhcCCCChHHHHHHHHcC--CCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCC---
Confidence            44444 34555554443332  456666666665  4555444 3456666655433      24566666666655   


Q ss_pred             cccccCCCchHHHHHHhc---CCHHHHHHHHHcCCCC-ccCcCCCCcHHHHHHHC--CCHHHHHHHHHcCCCCCc-cccc
Q 031607           74 VNAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADV-NLKNDGGRTALHYAASK--GWLKIVELLISRGAKINS-KDKA  146 (156)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~--~~~~~~~~Ll~~g~~~~~-~~~~  146 (156)
                      ++.++..|.|||+.|+..   ++.+++++|+++|+++ +.++..|.||||+|+..  ++.+++++|+++|++++. .+..
T Consensus       101 in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~  180 (494)
T PHA02989        101 INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLY  180 (494)
T ss_pred             CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccccc
Confidence            555555666666655433   4556666666666666 55566666666665432  355666666666666655 4556


Q ss_pred             cccccc
Q 031607          147 CWLHSI  152 (156)
Q Consensus       147 ~~t~l~  152 (156)
                      |.||||
T Consensus       181 g~tpL~  186 (494)
T PHA02989        181 GLTPMN  186 (494)
T ss_pred             CCChHH
Confidence            666654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.90  E-value=1.1e-23  Score=158.92  Aligned_cols=148  Identities=32%  Similarity=0.409  Sum_probs=124.1

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      |+|.....|.|+||.|...|+.++++.+++.+  ...+.....+.+++|.|...+...+++.+++.+..   ++.++..+
T Consensus       466 ~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~--~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~---v~~~~~r~  540 (1143)
T KOG4177|consen  466 DPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGG--ANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGAN---VDLRTGRG  540 (1143)
T ss_pred             CcchhccccCcchhhhhccCCchHHHHhhhcC--CccCccchhccchhhhhhhhhhHHHHHHHhhcCCc---eehhcccc
Confidence            45566666777777777777777777777766  55666666677777777777777777777777666   67788899


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      +||||+|+.+|+..++++|+++|++.+.+++.|+||||.|+..|+.+|+++|+++|+++|..+..|.|||+..
T Consensus       541 ~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA  613 (1143)
T KOG4177|consen  541 YTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIA  613 (1143)
T ss_pred             cchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999864

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=1.3e-23  Score=131.76  Aligned_cols=144  Identities=25%  Similarity=0.266  Sum_probs=135.0

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      +|..|++|.|||.+|+..|.++.|++|++.|  ++++....+..++|.+|++.|..++++.|+.++.+   ++..|..|-
T Consensus       153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~~G--Adp~~lgk~resALsLAt~ggytdiV~lLL~r~vd---VNvyDwNGg  227 (296)
T KOG0502|consen  153 VNACDEFGFTPLIWAAAKGHIPVVQFLLNSG--ADPDALGKYRESALSLATRGGYTDIVELLLTREVD---VNVYDWNGG  227 (296)
T ss_pred             ccCccccCchHhHHHHhcCchHHHHHHHHcC--CChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC---cceeccCCC
Confidence            6788999999999999999999999999988  78888888999999999999999999999999888   888899999


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccccc
Q 031607           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSI  152 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (156)
                      |||-+|+..++.+|++.|+..|++++..+..|.+++..|++.|+. +++..++.-+....+|....||+|
T Consensus       228 TpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  228 TPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             ceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            999999999999999999999999999999999999999999998 778888888888888888888886

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=4.1e-24  Score=146.85  Aligned_cols=145  Identities=28%  Similarity=0.340  Sum_probs=130.5

Q ss_pred             cccCcHHHHHHHhcCCHHHHHHHHHHHhhhh--------ccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccccc
Q 031607            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKS--------LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD   78 (156)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~--------~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~   78 (156)
                      ...|.|||.+|+++|..++|++|+++. +++        ++-...+|-+||..|+..|+.++++.|+.++..   ++...
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~-~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~---VN~tT  114 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHC-RASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGAS---VNDTT  114 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHh-cCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCc---ccccc
Confidence            456889999999999999999999964 232        333345688999999999999999999999976   66666


Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      .-..|||.-||.-|+.+++++|+++|++++..|..|.|.|+.|+..|+.+++++|++.|++++.++..|.|+||-++
T Consensus       115 ~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~ca  191 (615)
T KOG0508|consen  115 RTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCA  191 (615)
T ss_pred             ccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhh
Confidence            66779999999999999999999999999999999999999999999999999999999999999999999999876

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=1.6e-22  Score=127.12  Aligned_cols=117  Identities=26%  Similarity=0.338  Sum_probs=102.0

Q ss_pred             ccCCCCCCchHHHHHHHcCChHHHHHHHhhc---ccccccccccCCCchHHHHHHhcCC----HHHHHHHHHcCCCCccC
Q 031607           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVD---ESANVVNAVDEEGWAPIHSAASIGN----VTIVEMLLSKGADVNLK  110 (156)
Q Consensus        38 ~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~---~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~~  110 (156)
                      ++.++..|.||||+|++.|+.++++.|+...   ..+..++.++..|.||||+|+..++    .+++++|++.|++++.+
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            4567889999999999999999999986532   1112267788999999999999998    58899999999999998


Q ss_pred             cC-CCCcHHHHHHHCCCHHHHHHHHH-cCCCCCcccccccccccCC
Q 031607          111 ND-GGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       111 ~~-~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~~  154 (156)
                      +. .|.||||+|+..++.+++++|++ .|++++.+|..|+|||+..
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A  139 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELA  139 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHH
Confidence            85 89999999999999999999998 5999999999999999853

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=5e-22  Score=133.57  Aligned_cols=121  Identities=17%  Similarity=0.225  Sum_probs=105.9

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCC----CCCCchHHHHHHHcCChHHHHHHHhhcccccccccc-cCCCch
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLR----NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAV-DEEGWA   83 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~----~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~   83 (156)
                      ...++|+.|++.|+.++++.|++.|  ++++.+    +..|.||||+|+..++.+++++|+++|++   ++.. +..|.|
T Consensus        32 ~~~~lL~~A~~~~~~eivk~LL~~G--AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD---VN~~~~~~g~T  106 (300)
T PHA02884         32 CIANILYSSIKFHYTDIIDAILKLG--ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD---VNRYAEEAKIT  106 (300)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHCC--CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cCcccCCCCCC
Confidence            4567888888889999999999998  677775    45899999999999999999999999988   6654 457999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHH
Q 031607           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI  134 (156)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  134 (156)
                      |||.|+..++.+++++|+..|++++.++..|.||+++|+..++.+++..+.
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            999999999999999999999999999999999999999987776654443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.1e-22  Score=146.57  Aligned_cols=149  Identities=16%  Similarity=0.145  Sum_probs=116.9

Q ss_pred             Ccc-cccccCcHHHHHHHhcC---CHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcC--ChHHHHHHHhhcccccc--
Q 031607            2 DMD-IDQTIKDKDLFKAAETG---DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDESANV--   73 (156)
Q Consensus         2 ~~~-~~~~~~~~~l~~a~~~~---~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~--~~~~~~~ll~~~~~~~~--   73 (156)
                      ++| ..+..|.||||+|+..|   +.++|+.|+++|  ++++.+|..|+||||+|+..+  +.+++++|+..+.+...  
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~G--Adin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~  109 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRG--VERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL  109 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCC--CCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc
Confidence            355 56778999999999997   599999999988  889999999999999999976  79999999988642210  


Q ss_pred             --------------------------c-------cccc-----CCCchHHHHHHhcCCHHHHHHHHHcCCCCc-------
Q 031607           74 --------------------------V-------NAVD-----EEGWAPIHSAASIGNVTIVEMLLSKGADVN-------  108 (156)
Q Consensus        74 --------------------------~-------~~~~-----~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~-------  108 (156)
                                                +       +...     ..|.+++.++...++.+++++|++.|++++       
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence                                      0       0011     256778888888889999999999998884       


Q ss_pred             cCcCCCCcH-HHHH------HHCCCHHHHHHHHHcCCCCCccccccccccc
Q 031607          109 LKNDGGRTA-LHYA------ASKGWLKIVELLISRGAKINSKDKACWLHSI  152 (156)
Q Consensus       109 ~~~~~~~~~-l~~a------~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (156)
                      ..+....+| |+++      ...++.+++++|+++|++++.+|..|+||||
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh  240 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQ  240 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            122233333 4422      3456889999999999999999999999998

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=6.4e-23  Score=142.46  Aligned_cols=151  Identities=27%  Similarity=0.332  Sum_probs=132.8

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc--------
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--------   73 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~--------   73 (156)
                      ++|..+..|.|++|.+|+..+.++|+++++.+  ++++..|..||||+|.|+..|+..++++++..+.+...        
T Consensus        65 ~~~~~n~DglTalhq~~id~~~e~v~~l~e~g--a~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P  142 (527)
T KOG0505|consen   65 SPNLCNVDGLTALHQACIDDNLEMVKFLVENG--ANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMP  142 (527)
T ss_pred             CccccCCccchhHHHHHhcccHHHHHHHHHhc--CCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCc
Confidence            35667788999999999999999999999998  89999999999999999999999999999988764222        


Q ss_pred             ------------------------------------------------cccccCCCchHHHHHHhcCCHHHHHHHHHcCC
Q 031607           74 ------------------------------------------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA  105 (156)
Q Consensus        74 ------------------------------------------------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~  105 (156)
                                                                      ....+..|.|.+|+|+..|..++..+|++.|.
T Consensus       143 ~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~  222 (527)
T KOG0505|consen  143 YDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGY  222 (527)
T ss_pred             cccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhcc
Confidence                                                            22334458899999999999999999999999


Q ss_pred             CCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607          106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       106 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      .++.+|..|++|||.|+.=|..+++++|+++|++++.....|.||+-..
T Consensus       223 ~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~  271 (527)
T KOG0505|consen  223 SVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVA  271 (527)
T ss_pred             CcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccch
Confidence            9999999999999999999999999999999999999999999988654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.89  E-value=3.9e-22  Score=139.20  Aligned_cols=136  Identities=22%  Similarity=0.208  Sum_probs=119.2

Q ss_pred             ccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCC-----CCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLR-----NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~-----~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      ..+.+++|.|+..++.+++++|+++|.+ ..+..     +..+.+++|.|+..+..+++++|+.+|++   ++.++..|.
T Consensus       147 ~~~~t~lh~A~~~~~~eIVk~Lls~Ga~-~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD---IN~kD~~G~  222 (437)
T PHA02795        147 IECLNAYFRGICKKESSVVEFILNCGIP-DENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED---INQLDAGGR  222 (437)
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCc-ccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC---cCcCCCCCC
Confidence            3457899999999999999999999842 22221     23478899999999999999999999988   888999999


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCC--------HHHHHHHHHcCCCCCcccccc
Q 031607           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW--------LKIVELLISRGAKINSKDKAC  147 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~--------~~~~~~Ll~~g~~~~~~~~~~  147 (156)
                      ||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+        .+++++|+++|++++.....+
T Consensus       223 TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~~  295 (437)
T PHA02795        223 TLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLAI  295 (437)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHHh
Confidence            99999999999999999999999999999999999999999884        689999999999998765443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.89  E-value=2.4e-22  Score=121.79  Aligned_cols=139  Identities=32%  Similarity=0.371  Sum_probs=124.6

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHh
Q 031607           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (156)
Q Consensus        11 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~   90 (156)
                      -..+.+|+..+.+..|+.|++.. ...++.+|.+|+||||-|+.+|+.++++.|+..+++   ...+...|+||||.||+
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~-an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn---~~a~T~~GWTPLhSAck  139 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEK-ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN---KEAKTNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhc-cccccccccccccHHHHHHhcCchHHHHHHHHccCC---cccccccCccchhhhhc
Confidence            34678999999999999999987 478999999999999999999999999999999888   67788899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCH-HHHHHHHH-cCCCCCcccccccccccC
Q 031607           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL-KIVELLIS-RGAKINSKDKACWLHSIA  153 (156)
Q Consensus        91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~Ll~-~g~~~~~~~~~~~t~l~~  153 (156)
                      +.+.+++-.|+++|++++.......||||.|+...+. ..+++|+. .+.+....+..++||+..
T Consensus       140 WnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~i  204 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDI  204 (228)
T ss_pred             ccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHH
Confidence            9999999999999999999999899999999987664 55666655 588888999999998764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.87  E-value=4.3e-21  Score=108.46  Aligned_cols=89  Identities=45%  Similarity=0.739  Sum_probs=68.0

Q ss_pred             HHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHH
Q 031607           49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK  128 (156)
Q Consensus        49 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~  128 (156)
                      ||+||+.++.+++++|++.+..   .+.    |.|++|+|+..++.+++++|++.|++++.++..|.||+++|+..++.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~---~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD---INL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST---TTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC---CCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence            6788888888888888876544   222    677888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCCCCccc
Q 031607          129 IVELLISRGAKINSKD  144 (156)
Q Consensus       129 ~~~~Ll~~g~~~~~~~  144 (156)
                      ++++|+++|++++.+|
T Consensus        74 ~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   74 IVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHcCCCCCCcC
Confidence            8888888888887765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.87  E-value=1e-21  Score=148.57  Aligned_cols=145  Identities=32%  Similarity=0.399  Sum_probs=135.4

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      .+.+...+.+++|.|...+....++.+++++  ++++.++..|+||||.||..|+.++|++|++++.+   .+.+++.|+
T Consensus       500 ~~~~~~~~l~~lhla~~~~~v~~~~~l~~~g--a~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd---v~ak~~~G~  574 (1143)
T KOG4177|consen  500 DNLDAKKGLTPLHLAADEDTVKVAKILLEHG--ANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD---VNAKDKLGY  574 (1143)
T ss_pred             cCccchhccchhhhhhhhhhHHHHHHHhhcC--CceehhcccccchHHHHHhcCCchHHHHhhhCCcc---ccccCCCCC
Confidence            4556678899999999999999999999998  88999999999999999999999999999999998   778889999


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCC-----CCccccccccccc
Q 031607           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-----INSKDKACWLHSI  152 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~~~t~l~  152 (156)
                      ||||.|+..|+.+++.+|+++|+++|..+.+|.|||+.|.+.|+.++++.|+..+..     ....+..|.+|..
T Consensus       575 TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~  649 (1143)
T KOG4177|consen  575 TPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPED  649 (1143)
T ss_pred             ChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhh
Confidence            999999999999999999999999999999999999999999999999999999988     6677777877754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=3.7e-21  Score=129.40  Aligned_cols=113  Identities=22%  Similarity=0.239  Sum_probs=99.7

Q ss_pred             ccCCCCCCchH-HHHHHHcCChHHHHHHHhhcccccccccc----cCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCc-
Q 031607           38 LSLRNDDDRTL-LHVAASCGHPEVVEILLSVDESANVVNAV----DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-  111 (156)
Q Consensus        38 ~~~~~~~g~~~-l~~A~~~~~~~~~~~ll~~~~~~~~~~~~----~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-  111 (156)
                      +..+|..|+++ ||.|+..++.+++++|+++|++   ++.+    +..|.||||+|+..++.+++++|+++|++++.++ 
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAd---iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~  101 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGAD---PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAE  101 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCC---ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccC
Confidence            44567767765 6666777899999999999988   5544    4689999999999999999999999999999864 


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       112 ~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ..|.||||.|+..++.+++++|+.+|++++.+|..|.||||.
T Consensus       102 ~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~  143 (300)
T PHA02884        102 EAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIEL  143 (300)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            579999999999999999999999999999999999999984

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.87  E-value=1.4e-21  Score=147.16  Aligned_cols=146  Identities=25%  Similarity=0.215  Sum_probs=111.4

Q ss_pred             CcccccccCcHHHH-HHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcC---ChHHHHHHHhhccccc-----
Q 031607            2 DMDIDQTIKDKDLF-KAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG---HPEVVEILLSVDESAN-----   72 (156)
Q Consensus         2 ~~~~~~~~~~~~l~-~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~---~~~~~~~ll~~~~~~~-----   72 (156)
                      |+|..+..|.|||| .|+..++.++++.|++.+.      ++..|.||||.|+..+   ...++..+........     
T Consensus        44 ~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~  117 (743)
T TIGR00870        44 NINCPDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELA  117 (743)
T ss_pred             CCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhh
Confidence            56777778888888 7777777788887777662      5667888888887622   2233344433321100     


Q ss_pred             --ccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCc--------------CCCCcHHHHHHHCCCHHHHHHHHHc
Q 031607           73 --VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN--------------DGGRTALHYAASKGWLKIVELLISR  136 (156)
Q Consensus        73 --~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~Ll~~  136 (156)
                        ........|.||||.|+..++.+++++|+++|++++.+.              ..|.+|++.|+..++.+++++|+++
T Consensus       118 ~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~  197 (743)
T TIGR00870       118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED  197 (743)
T ss_pred             ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC
Confidence              011123469999999999999999999999999988653              2588999999999999999999999


Q ss_pred             CCCCCcccccccccccC
Q 031607          137 GAKINSKDKACWLHSIA  153 (156)
Q Consensus       137 g~~~~~~~~~~~t~l~~  153 (156)
                      |++++.+|..|.||||.
T Consensus       198 gadin~~d~~g~T~Lh~  214 (743)
T TIGR00870       198 PADILTADSLGNTLLHL  214 (743)
T ss_pred             CcchhhHhhhhhHHHHH
Confidence            99999999999999985

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=4.3e-21  Score=120.17  Aligned_cols=116  Identities=21%  Similarity=0.237  Sum_probs=98.7

Q ss_pred             hhccCCCCCCchHHHHHHHcCCh----HHHHHHHhhcccccccccccCCCchHHHHHHhcCCHH---HHHHHHHcCCCCc
Q 031607           36 KSLSLRNDDDRTLLHVAASCGHP----EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT---IVEMLLSKGADVN  108 (156)
Q Consensus        36 ~~~~~~~~~g~~~l~~A~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~l~~~~~~~~  108 (156)
                      .+.+..+..+.+++|+||+.|+.    +++++|+..+..   ++.++..|+||||+|+..++.+   ++++|++.|++++
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~---~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin   87 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL---LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN   87 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh---hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC
Confidence            34445667788999999999997    455566666554   6778889999999999998755   4799999999999


Q ss_pred             cCc-CCCCcHHHHHHHCCCHHHHHHHHH-cCCCCCcccccccccccCC
Q 031607          109 LKN-DGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       109 ~~~-~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~~  154 (156)
                      .++ ..|.||||+|+..++.+++++|+. .|++++.++..|.||||..
T Consensus        88 ~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A  135 (166)
T PHA02743         88 ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIA  135 (166)
T ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHH
Confidence            998 489999999999999999999995 7999999999999999853

>PHA02917 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.9e-20  Score=138.29  Aligned_cols=137  Identities=20%  Similarity=0.264  Sum_probs=108.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHH--HcCChHHHHHHHhhcccccccccccCCC--------
Q 031607           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAA--SCGHPEVVEILLSVDESANVVNAVDEEG--------   81 (156)
Q Consensus        12 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~--------   81 (156)
                      .+++.|+..+++++|++|+++|  ++++.+|..|+||||+|+  ..++.+++++|+++|.+....+..+..|        
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~G--adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHG--FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcC--CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccc
Confidence            4556666677888888888887  889999999999999654  4689999999999998743222222334        


Q ss_pred             ---chHHHHHHh-----------cCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCH--HHHHHHHHcCCCCCc---
Q 031607           82 ---WAPIHSAAS-----------IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL--KIVELLISRGAKINS---  142 (156)
Q Consensus        82 ---~~~l~~a~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~Ll~~g~~~~~---  142 (156)
                         .||||+|+.           .++.+++++|++.|++++.++..|.||||+|+..|+.  +++++|++ |++.+.   
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~  261 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSY  261 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccccccc
Confidence               599999986           4589999999999999999999999999999999985  79999975 877653   


Q ss_pred             -ccccccccc
Q 031607          143 -KDKACWLHS  151 (156)
Q Consensus       143 -~~~~~~t~l  151 (156)
                       .+..|.||+
T Consensus       262 ~~~~~~~~~~  271 (661)
T PHA02917        262 IDDLTCCTRG  271 (661)
T ss_pred             ccCcccccch
Confidence             444544433

>PHA02730 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.5e-20  Score=137.06  Aligned_cols=128  Identities=14%  Similarity=0.206  Sum_probs=67.4

Q ss_pred             CHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCC----hHHHHHHHhhcccccccccccCCCchHHHH---HHhcC--
Q 031607           22 DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH----PEVVEILLSVDESANVVNAVDEEGWAPIHS---AASIG--   92 (156)
Q Consensus        22 ~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~---a~~~~--   92 (156)
                      ++++++.|+++|  ++++.. ..|.||||+|+..+.    .+++++|+.+|.... ++.++..|.|+||.   +...+  
T Consensus       358 ~ieIvelLIs~G--AdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~d-IN~kd~~G~T~Lh~~i~a~~~n~~  433 (672)
T PHA02730        358 SIPILRCMLDNG--ATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMA-INHVSNNGRLCMYGLILSRFNNCG  433 (672)
T ss_pred             cHHHHHHHHHCC--CCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcc-ccccccCCCchHhHHHHHHhcccc
Confidence            355566666655  444443 455566665555443    456666665543211 34445555565552   11111  


Q ss_pred             -------CHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccc-cccccccC
Q 031607           93 -------NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK-ACWLHSIA  153 (156)
Q Consensus        93 -------~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~~~t~l~~  153 (156)
                             ..+++++|+++|++++.+|..|.|||++|+..++.+++++|+++|++++.++. .|.||+|.
T Consensus       434 ~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~  502 (672)
T PHA02730        434 YHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQK  502 (672)
T ss_pred             ccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHH
Confidence                   12345566666665666665666666666666556666666666666665554 35555543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.85  E-value=1.8e-20  Score=105.86  Aligned_cols=89  Identities=39%  Similarity=0.591  Sum_probs=78.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCC
Q 031607           14 LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN   93 (156)
Q Consensus        14 l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~   93 (156)
                      ||.|++.|+++++++|++.+  .+++.    |.+|||+|+..|+.+++++|++.+.+   ++.++..|.||||+|+..++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~--~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG--ADINL----GNTALHYAAENGNLEIVKLLLENGAD---INSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT--STTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC---TT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCc--CCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc---ccccCCCCCCHHHHHHHcCC
Confidence            79999999999999999976  44443    88999999999999999999999887   77888999999999999999


Q ss_pred             HHHHHHHHHcCCCCccCc
Q 031607           94 VTIVEMLLSKGADVNLKN  111 (156)
Q Consensus        94 ~~~~~~l~~~~~~~~~~~  111 (156)
                      .+++++|+++|++++.+|
T Consensus        72 ~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   72 LEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHHHcCCCCCCcC
Confidence            999999999999988764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.85  E-value=4.4e-21  Score=125.25  Aligned_cols=112  Identities=41%  Similarity=0.482  Sum_probs=55.3

Q ss_pred             ccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcH
Q 031607           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA  117 (156)
Q Consensus        38 ~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  117 (156)
                      .+.-|..|++|||+||+.|+..+++.|+..|..   ++.++....||||.|+..|+.++++.|+++.++++..+..|.||
T Consensus        27 ln~gddhgfsplhwaakegh~aivemll~rgar---vn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntp  103 (448)
T KOG0195|consen   27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR---VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTP  103 (448)
T ss_pred             cccccccCcchhhhhhhcccHHHHHHHHhcccc---cccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCc
Confidence            344444455555555555555555555544443   33334444445555555555555555555555555555555555


Q ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCccccccccccc
Q 031607          118 LHYAASKGWLKIVELLISRGAKINSKDKACWLHSI  152 (156)
Q Consensus       118 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (156)
                      |||||.-|.-.+++-|+..|+.++.-|++|+||+-
T Consensus       104 lhyacfwgydqiaedli~~ga~v~icnk~g~tpld  138 (448)
T KOG0195|consen  104 LHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLD  138 (448)
T ss_pred             hhhhhhhcHHHHHHHHHhccceeeecccCCCCchh
Confidence            55555555555555555555555555555555543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.84  E-value=1.2e-19  Score=108.22  Aligned_cols=125  Identities=40%  Similarity=0.606  Sum_probs=112.0

Q ss_pred             cccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchH
Q 031607            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP   84 (156)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~   84 (156)
                      +.+..|.++|+.|++.++.+++++|++.+  ...+.++..|.+|+|+|+..+..+++++|+..+..   .+..+..+.++
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~--~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~   76 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENG--ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD---VNARDKDGNTP   76 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCH
Confidence            34577999999999999999999999988  45577888999999999999999999999998865   55667788999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHH
Q 031607           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI  134 (156)
Q Consensus        85 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  134 (156)
                      +|.|+..++.+++++|++.+...+..+..+.+|++.|...+..+++++|+
T Consensus        77 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          77 LHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999999888888889999999999999999988874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.84  E-value=1.3e-20  Score=123.05  Aligned_cols=135  Identities=33%  Similarity=0.386  Sum_probs=119.0

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      |.|.-+..|.+|||+|++.|....++-|+.+|  +.++..+....||||+|+.+|+.+++..|+..+.+   ++..+..|
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rg--arvn~tnmgddtplhlaaahghrdivqkll~~kad---vnavnehg  100 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRG--ARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD---VNAVNEHG  100 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhcc--cccccccCCCCcchhhhhhcccHHHHHHHHHHhcc---cchhhccC
Confidence            67888899999999999999999999999999  78888888899999999999999999999999888   88889999


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN  141 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~  141 (156)
                      +|||||||..|.-.+.+-|+..|+.+++.+++|.||+..|.-.-...+.+.--++|.+++
T Consensus       101 ntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  101 NTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             CCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999998865433334444445666554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=8.8e-21  Score=117.59  Aligned_cols=118  Identities=18%  Similarity=0.159  Sum_probs=93.3

Q ss_pred             hccCCCCCCchHHHHHHHcCChHHHHHHHhhccc--ccccccccCCCchHHHHHHhcCCH---HHHHHHHHcCCCCccCc
Q 031607           37 SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDES--ANVVNAVDEEGWAPIHSAASIGNV---TIVEMLLSKGADVNLKN  111 (156)
Q Consensus        37 ~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~--~~~~~~~~~~~~~~l~~a~~~~~~---~~~~~l~~~~~~~~~~~  111 (156)
                      ..+..|..|.||||+||+.|+...+.........  .......+..|.|+||+|+..++.   +++++|++.|++++.++
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            3445678899999999999984322211111111  111345678999999999999876   46889999999999998


Q ss_pred             C-CCCcHHHHHHHCCCHHHHHHHHH-cCCCCCcccccccccccCC
Q 031607          112 D-GGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       112 ~-~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~~  154 (156)
                      . .|.||||+|+..++.+++++|++ .|++++.++..|+||||..
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A  133 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA  133 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHH
Confidence            4 89999999999999999999998 4999999999999999853

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=1e-19  Score=121.78  Aligned_cols=129  Identities=28%  Similarity=0.390  Sum_probs=118.9

Q ss_pred             CcccccccCcHHHHHHHhc-----CCHHHHHHHHHHHhhhhccCCC-CCCchHHHHHHHcCChHHHHHHHhhcccccccc
Q 031607            2 DMDIDQTIKDKDLFKAAET-----GDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHPEVVEILLSVDESANVVN   75 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~-----~~~~~v~~ll~~~~~~~~~~~~-~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~   75 (156)
                      |+|..+.-|.||++.++..     .++++|..|+..+   ++|.+. +.|+|+|++|+.+|+.++++.|+..+.+   +|
T Consensus       294 ~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg---nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd---VN  367 (452)
T KOG0514|consen  294 DVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG---DVNAKASQHGQTALMLAVSHGRVDMVKALLACGAD---VN  367 (452)
T ss_pred             cccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc---CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCC---Cc
Confidence            6788899999999999875     4899999999988   677764 5799999999999999999999999998   88


Q ss_pred             cccCCCchHHHHHHhcCCHHHHHHHHHc-CCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHc
Q 031607           76 AVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISR  136 (156)
Q Consensus        76 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  136 (156)
                      .+|.+|.|+|+.|+++|+.+++++|+.. +++....|.+|.|+|.+|...|+.+|.-+|+.+
T Consensus       368 iQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  368 IQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             cccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            9999999999999999999999999976 899999999999999999999999999999876

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=4.5e-20  Score=128.46  Aligned_cols=139  Identities=36%  Similarity=0.533  Sum_probs=126.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhc
Q 031607           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (156)
Q Consensus        12 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~   91 (156)
                      -.+..|+..|+.+.+..|+..+  ...+..+.+|.|++|-+|.-.+.+++++|++++.+   ++..|..++||+|.|+-.
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~g--a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~---Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRG--ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN---VNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             HHHHhccccccHHHHHHHhccC--CCccccCCccchhHHHHHhcccHHHHHHHHHhcCC---ccccccccCCcchhhccc
Confidence            3577899999999999999988  66688899999999999999999999999999998   899999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCcc-----------------------------------------------------------CcC
Q 031607           92 GNVTIVEMLLSKGADVNL-----------------------------------------------------------KND  112 (156)
Q Consensus        92 ~~~~~~~~l~~~~~~~~~-----------------------------------------------------------~~~  112 (156)
                      +++.++++++..|+++-.                                                           ++.
T Consensus       117 g~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~  196 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHA  196 (527)
T ss_pred             ccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccc
Confidence            999999999998874321                                                           113


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607          113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus       113 ~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      .|.|.+|+|...|..++.++|+++|.+++.+|.+||||||+..
T Consensus       197 rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA  239 (527)
T KOG0505|consen  197 RGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAA  239 (527)
T ss_pred             ccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHH
Confidence            4789999999999999999999999999999999999999864

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=2.2e-19  Score=109.11  Aligned_cols=107  Identities=32%  Similarity=0.376  Sum_probs=100.0

Q ss_pred             chHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCC
Q 031607           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG  125 (156)
Q Consensus        46 ~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~  125 (156)
                      ...+.+|+..+....|+.|+...++.  ++.+|.+++||||-|++.++.++++.|+..|++.+.+...|+||||.|+.-.
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~--vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANH--VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhcccc--ccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc
Confidence            34578899999999999999887664  7899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCcccccccccccCC
Q 031607          126 WLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       126 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      +.+|+.+|+++|++++....-..||||..
T Consensus       142 N~~va~~LLqhgaDVnA~t~g~ltpLhla  170 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADVNAQTKGLLTPLHLA  170 (228)
T ss_pred             chhHHHHHHhccCcccccccccchhhHHh
Confidence            99999999999999999999999999964

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.79  E-value=4.8e-18  Score=101.27  Aligned_cols=111  Identities=47%  Similarity=0.696  Sum_probs=102.3

Q ss_pred             CCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHH
Q 031607           41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY  120 (156)
Q Consensus        41 ~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~  120 (156)
                      .+..|.||||+|+..++.+++++|+..+..   ....+..|.++++.|+..++.+++++|++.+..++..+..+.+|+++
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~---~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~   79 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD---VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHL   79 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            467799999999999999999999988876   46778899999999999999999999999998888888889999999


Q ss_pred             HHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607          121 AASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       121 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      |+..++.+++++|++++.+.+..+..+.||++..
T Consensus        80 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~  113 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLA  113 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            9999999999999999999999999999998753

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.77  E-value=6.7e-19  Score=127.08  Aligned_cols=136  Identities=30%  Similarity=0.367  Sum_probs=70.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHh-----------hhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607           13 DLFKAAETGDSSTFKSLSKQQL-----------LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus        13 ~l~~a~~~~~~~~v~~ll~~~~-----------~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      -+..|++.|+++.++.+++...           ....+..|..|+|.||.||..|+..+++.|++....   ....+..|
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~---ldl~d~kg   82 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL---LDLCDTKG   82 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh---hhhhhccC
Confidence            3445555555555555554210           123444455555555555555555555555544333   33334455


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccc
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHS  151 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (156)
                      .+|+|+|++.|+.++++.++..+..++..+..|.||||.|+++++++++.+|+++|++.-.+|+.+.|++
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~l  152 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVL  152 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHH
Confidence            5555555555555555555555544555555555555555555555555555555555555555555554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.77  E-value=1.3e-17  Score=120.92  Aligned_cols=134  Identities=22%  Similarity=0.194  Sum_probs=109.6

Q ss_pred             HHHHHhcC--CHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCC--CchHHHHHH
Q 031607           14 LFKAAETG--DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE--GWAPIHSAA   89 (156)
Q Consensus        14 l~~a~~~~--~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~--~~~~l~~a~   89 (156)
                      |+.=...+  +++++++|++.|  ++..  ......+++.|+..++.+++++|+.+|++   ++.++..  +.||||.|.
T Consensus       310 l~~Yl~~~~v~ieiIK~LId~G--a~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GAD---IN~kD~~g~~~TpLh~A~  382 (631)
T PHA02792        310 LSEYVSYHTVYINVIKCMIDEG--ATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNV---VVEDDDNIINIMPLFPTL  382 (631)
T ss_pred             HHHHHhcCCccHHHHHHHHHCC--Cccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCc---hhhhcCCCCChhHHHHHH
Confidence            34444444  788999999988  3332  22356678899999999999999999988   6666655  468999877


Q ss_pred             hcCCH---HHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           90 SIGNV---TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        90 ~~~~~---~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      .....   +++++++++|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|.|||+.+
T Consensus       383 ~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A  450 (631)
T PHA02792        383 SIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGIC  450 (631)
T ss_pred             HhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            65544   457888999999999999999999999999999999999999999999999999999853

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.76  E-value=2e-18  Score=130.21  Aligned_cols=128  Identities=23%  Similarity=0.217  Sum_probs=106.5

Q ss_pred             ccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCC--------------CCCchHHHHHHHcCChHHHHHHHhhcccccc
Q 031607            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN--------------DDDRTLLHVAASCGHPEVVEILLSVDESANV   73 (156)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~--------------~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~   73 (156)
                      ..|.||||.|+..|+.++|+.|+++|  ++++.++              ..|.+|||+|+..++.+++++|++.+.+   
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~G--Adv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad---  200 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERG--ASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD---  200 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCC--CCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc---
Confidence            46999999999999999999999988  5555432              3589999999999999999999998876   


Q ss_pred             cccccCCCchHHHHHHhcC---------CHHHHHHHHHcCCCC-------ccCcCCCCcHHHHHHHCCCHHHHHHHHHcC
Q 031607           74 VNAVDEEGWAPIHSAASIG---------NVTIVEMLLSKGADV-------NLKNDGGRTALHYAASKGWLKIVELLISRG  137 (156)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~---------~~~~~~~l~~~~~~~-------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g  137 (156)
                      ++.+|..|+|++|.|+..+         ...+.++++..+...       +..|..|.||+++|+..|+.+++++|++.+
T Consensus       201 in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       201 ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            7788999999999999876         233556666554332       567889999999999999999999999965


Q ss_pred             CCC
Q 031607          138 AKI  140 (156)
Q Consensus       138 ~~~  140 (156)
                      .+.
T Consensus       281 ~~~  283 (743)
T TIGR00870       281 YKQ  283 (743)
T ss_pred             Hhc
Confidence            443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.76  E-value=1.6e-17  Score=120.39  Aligned_cols=128  Identities=19%  Similarity=0.308  Sum_probs=110.2

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCC--chHHHHHHHcCCh---HHHHHHHhhcccccccccccCCCch
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDD--RTLLHVAASCGHP---EVVEILLSVDESANVVNAVDEEGWA   83 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g--~~~l~~A~~~~~~---~~~~~ll~~~~~~~~~~~~~~~~~~   83 (156)
                      .....++.|+..|+.+++++|+++|  ++++.+|..|  .||||+|+.....   +++++++.++++   ++.++..|.|
T Consensus       338 ~~~n~~~~Aa~~gn~eIVelLIs~G--ADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD---IN~kD~~G~T  412 (631)
T PHA02792        338 KHINKYFQKFDNRDPKVVEYILKNG--NVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD---INKIDKHGRS  412 (631)
T ss_pred             CcchHHHHHHHcCCHHHHHHHHHcC--CchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc---cccccccCcc
Confidence            3566799999999999999999998  7777777664  6999998776654   467888988887   7889999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHH--CC--------CHHHHHHHHHcCCCCC
Q 031607           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS--KG--------WLKIVELLISRGAKIN  141 (156)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~--~~--------~~~~~~~Ll~~g~~~~  141 (156)
                      |||+|+..++.+++++|+++|++++.++..|.||+++|..  .+        ..++++.|+++|.+++
T Consensus       413 PLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        413 ILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             hHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            9999999999999999999999999999999999999976  22        2567899999998775

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.76  E-value=5.6e-18  Score=123.19  Aligned_cols=125  Identities=23%  Similarity=0.260  Sum_probs=113.1

Q ss_pred             cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCC-----------------------CCCCchHHHHHHHcCChHHHHH
Q 031607            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLR-----------------------NDDDRTLLHVAASCGHPEVVEI   63 (156)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~-----------------------~~~g~~~l~~A~~~~~~~~~~~   63 (156)
                      ...|.|+||.|+.+.+.+.|..|++.+  ++++.+                       -..|..||.+|+..+..+++++
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~g--ADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl  258 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAG--ADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL  258 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcC--CchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH
Confidence            346999999999999999999999987  333222                       2247899999999999999999


Q ss_pred             HHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCC--CccCcCCCCcHHHHHHHCCCHHHHHHHHHc
Q 031607           64 LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD--VNLKNDGGRTALHYAASKGWLKIVELLISR  136 (156)
Q Consensus        64 ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  136 (156)
                      |++++++   ++.+|..|+|.||.++..-..++..++++.|++  ...+++.|-|||..|+..|..+|++++++.
T Consensus       259 Ll~~gAd---~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  259 LLAHGAD---PNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHhcCCC---CCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999998   889999999999999999999999999999999  899999999999999999999999999997

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.76  E-value=1.2e-17  Score=121.45  Aligned_cols=152  Identities=20%  Similarity=0.204  Sum_probs=126.5

Q ss_pred             CcccccccCcHHHHHHHhc---CCHHHHHHHHHHHhhh---hccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc--
Q 031607            2 DMDIDQTIKDKDLFKAAET---GDSSTFKSLSKQQLLK---SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--   73 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~---~~~~~v~~ll~~~~~~---~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~--   73 (156)
                      +++.+...|.|.||.|..+   +..+.+..|++.....   ..-.....|.||||.|+.+.+.+++++|++.|++.+.  
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa  214 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARA  214 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHh
Confidence            4667788999999999984   3458888888865221   1112245799999999999999999999999887432  


Q ss_pred             ------cccc------------cCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHH
Q 031607           74 ------VNAV------------DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS  135 (156)
Q Consensus        74 ------~~~~------------~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  135 (156)
                            ...+            -..|..||..|+=.++.+++++|+++|++++.+|..|.|.||.++.+-..++..++++
T Consensus       215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~  294 (782)
T KOG3676|consen  215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALE  294 (782)
T ss_pred             hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHh
Confidence                  0111            1357889999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC--CCcccccccccccC
Q 031607          136 RGAK--INSKDKACWLHSIA  153 (156)
Q Consensus       136 ~g~~--~~~~~~~~~t~l~~  153 (156)
                      +|++  ...+|.+|.|||..
T Consensus       295 ~ga~~l~~v~N~qgLTPLtL  314 (782)
T KOG3676|consen  295 LGANALEHVRNNQGLTPLTL  314 (782)
T ss_pred             cCCCccccccccCCCChHHH
Confidence            9999  89999999999864

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.76  E-value=6.4e-18  Score=92.40  Aligned_cols=102  Identities=25%  Similarity=0.372  Sum_probs=79.5

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHh
Q 031607           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (156)
Q Consensus        11 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~   90 (156)
                      +..+.+++++|.++.|+..+..+  .+++. ...|++|||||+-+|..+++++|+..+++   ++.+|++|.|||..|++
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g--~nVn~-~~ggR~plhyAAD~GQl~ilefli~iGA~---i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEG--LNVNE-IYGGRTPLHYAADYGQLSILEFLISIGAN---IQDKDKYGITPLLSAVW   76 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHcc--ccHHH-HhCCcccchHhhhcchHHHHHHHHHhccc---cCCccccCCcHHHHHHH
Confidence            45677888888888888888877  34443 34788888888888888888888888877   77788888888888888


Q ss_pred             cCCHHHHHHHHHcCCCCccCcCCCCcHH
Q 031607           91 IGNVTIVEMLLSKGADVNLKNDGGRTAL  118 (156)
Q Consensus        91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l  118 (156)
                      .|+..|+++|++.|++.......|.+.+
T Consensus        77 EGH~~cVklLL~~GAdrt~~~PdG~~~~  104 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADRTIHAPDGTALI  104 (117)
T ss_pred             HhhHHHHHHHHHcCcccceeCCCchhHH
Confidence            8888888888888887666665664443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.75  E-value=1.4e-17  Score=91.04  Aligned_cols=100  Identities=27%  Similarity=0.313  Sum_probs=89.6

Q ss_pred             HHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCH
Q 031607           48 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL  127 (156)
Q Consensus        48 ~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~  127 (156)
                      .+.+++++|..+-++.....+.+   ++..- .|++|||+|+-+|+++++++|+..|++++.+|++|-|||..|++.|+.
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~n---Vn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLN---VNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcccc---HHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH
Confidence            46788999999999988877755   44433 789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCcccccccccc
Q 031607          128 KIVELLISRGAKINSKDKACWLHS  151 (156)
Q Consensus       128 ~~~~~Ll~~g~~~~~~~~~~~t~l  151 (156)
                      +++++|+++|++...+-.+|.+.+
T Consensus        81 ~cVklLL~~GAdrt~~~PdG~~~~  104 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAPDGTALI  104 (117)
T ss_pred             HHHHHHHHcCcccceeCCCchhHH
Confidence            999999999999998888887654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.74  E-value=8.8e-18  Score=121.43  Aligned_cols=134  Identities=28%  Similarity=0.350  Sum_probs=122.9

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      .+|..+.+|.|.||.|+.+|+...++.|++..  ..++..+..|.+|||+|+..|+.++++.++..+..   .+.....|
T Consensus        41 s~n~qd~~gfTalhha~Lng~~~is~llle~e--a~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~---~na~~~e~  115 (854)
T KOG0507|consen   41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYE--ALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI---LNAVNIEN  115 (854)
T ss_pred             cccccCccchhHHHHHHhcCchHHHHHHhcch--hhhhhhhccCcceEEehhhcCcchHHHHHHhcccC---CCcccccC
Confidence            36777889999999999999999999999987  66777788999999999999999999999988854   77788899


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI  140 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~  140 (156)
                      .+|||.|+..++.+++++|++++++.-++++.++|++..|+++|..++++.|++.....
T Consensus       116 ~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~  174 (854)
T KOG0507|consen  116 ETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPV  174 (854)
T ss_pred             cCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccch
Confidence            99999999999999999999999999999999999999999999999999999874433

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.73  E-value=1.3e-16  Score=104.17  Aligned_cols=130  Identities=38%  Similarity=0.497  Sum_probs=116.1

Q ss_pred             ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCC-----hHHHHHHHhhcccccccccccCC
Q 031607            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH-----PEVVEILLSVDESANVVNAVDEE   80 (156)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~-----~~~~~~ll~~~~~~~~~~~~~~~   80 (156)
                      .+..+.++++.++..++.+.+.+++..+  .+++.++..|.||+|+|+..++     .++++.|++.+........++..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASG--ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcC--CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            3445788999999999999999999988  6778899999999999999999     99999999998821125667899


Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC
Q 031607           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (156)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g  137 (156)
                      |.||+|+|+..++.+++..+++.|++++.++..|.|+++.|+..+..+++..+.+.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999954

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.67  E-value=9.5e-16  Score=114.11  Aligned_cols=103  Identities=31%  Similarity=0.425  Sum_probs=95.4

Q ss_pred             HHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCH
Q 031607           48 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL  127 (156)
Q Consensus        48 ~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~  127 (156)
                      .|+.|+..|+.++++.|+..+.+   ++.++..|.|+||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad---in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD---PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            48889999999999999998887   778889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc-------CCCCCcccccccccccC
Q 031607          128 KIVELLISR-------GAKINSKDKACWLHSIA  153 (156)
Q Consensus       128 ~~~~~Ll~~-------g~~~~~~~~~~~t~l~~  153 (156)
                      +++++|+++       |++.+..+..|.+|+..
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~  194 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLE  194 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccch
Confidence            999999999       89998888888877654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=1.3e-15  Score=106.76  Aligned_cols=121  Identities=31%  Similarity=0.423  Sum_probs=103.7

Q ss_pred             CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHH
Q 031607           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (156)
Q Consensus        10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~   89 (156)
                      ..-.|..|+..|.++.|+..+..-  .+...-+.+|.|+||-|+..|+.+||+||++.+.+   ++..|.+|+||||+|+
T Consensus       550 PLaLLLDaaLeGEldlVq~~i~ev--~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan---VNa~DSdGWTPLHCAA  624 (752)
T KOG0515|consen  550 PLALLLDAALEGELDLVQRIIYEV--TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN---VNAADSDGWTPLHCAA  624 (752)
T ss_pred             hHHHHHhhhhcchHHHHHHHHHhh--cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc---ccCccCCCCchhhhhh
Confidence            345678899999999999998876  56777788999999999999999999999999998   8999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCccCc-CCCCcHHHHHHH--CCCHHHHHHHHH
Q 031607           90 SIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAAS--KGWLKIVELLIS  135 (156)
Q Consensus        90 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~--~~~~~~~~~Ll~  135 (156)
                      ..++..+++.|++.|+.+-... .++.|+...|..  .|+..|.+||..
T Consensus       625 SCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  625 SCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999987654333 356788877764  467789999865

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.63  E-value=3.6e-15  Score=111.10  Aligned_cols=105  Identities=27%  Similarity=0.377  Sum_probs=93.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhc
Q 031607           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (156)
Q Consensus        12 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~   91 (156)
                      ..|+.|+..|+.+.++.|++.+  .+++.+|..|+||||+||..|+.+++++|++.+.+   ++.++..|.||||+|+..
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~G--adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad---vn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGG--ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD---PTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHC
Confidence            4588999999999999999987  78889999999999999999999999999999887   778899999999999999


Q ss_pred             CCHHHHHHHHHc-------CCCCccCcCCCCcHHHHH
Q 031607           92 GNVTIVEMLLSK-------GADVNLKNDGGRTALHYA  121 (156)
Q Consensus        92 ~~~~~~~~l~~~-------~~~~~~~~~~~~~~l~~a  121 (156)
                      ++.+++++|+++       +++.+..+..|.+|+...
T Consensus       159 g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        159 GFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             CcHHHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            999999999988       777777666666654433

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=1.9e-14  Score=94.03  Aligned_cols=113  Identities=40%  Similarity=0.535  Sum_probs=103.7

Q ss_pred             cCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCC-----HHHHHHHHHcCC---CCccC
Q 031607           39 SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN-----VTIVEMLLSKGA---DVNLK  110 (156)
Q Consensus        39 ~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~l~~~~~---~~~~~  110 (156)
                      ...+..+.++++.++..+...++.+++..+.+   ++.++..|.|++|.|+..++     .++++.|++.|.   ..+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGAD---VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCC---cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            34455689999999999999999999988887   67889999999999999999     999999999999   66777


Q ss_pred             cCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607          111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       111 ~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      +..|.||+|+|+..|..++++.|++.|++++.++..|.|+++..
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a  187 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPA  187 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhh
Confidence            99999999999999999999999999999999999999999864

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.61  E-value=2.1e-15  Score=77.04  Aligned_cols=54  Identities=31%  Similarity=0.441  Sum_probs=26.5

Q ss_pred             CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHH
Q 031607           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL   65 (156)
Q Consensus        10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll   65 (156)
                      |.|+||.|++.|+.+++++|++.+  .+++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~--~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG--ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT--SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            345555555555555555555554  445555555555555555555555555553

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.60  E-value=3.6e-14  Score=93.04  Aligned_cols=122  Identities=27%  Similarity=0.359  Sum_probs=110.5

Q ss_pred             CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHH
Q 031607           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (156)
Q Consensus        10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~   89 (156)
                      ..++|..++-+|+.+-...|+..-  .+++.+|+.|+++|..|+..|+.+.++.|++.+.+.+  ..++..++||||.|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~v--r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN--~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTV--RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVN--DKQHGTLYTPLMFAA   87 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHh--hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC--cccccccccHHHHHH
Confidence            467999999999999999999875  6789999999999999999999999999999999842  246778999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHH
Q 031607           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS  135 (156)
Q Consensus        90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  135 (156)
                      ..|+.++.++|++.|+.....+.-|.|+-..|+..|+.+++..+-.
T Consensus        88 LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            9999999999999999999999999999999999999998876643

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.60  E-value=5e-15  Score=75.60  Aligned_cols=52  Identities=50%  Similarity=0.843  Sum_probs=24.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHH
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL  133 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  133 (156)
                      .|++|.|+..|+.+++++|++.|.+++.+|..|.||+|+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            4455555555555555555555555555555555555555555555555554

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.57  E-value=1.7e-15  Score=77.74  Aligned_cols=52  Identities=42%  Similarity=0.548  Sum_probs=22.6

Q ss_pred             HHcC-CCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccccc
Q 031607          101 LSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSI  152 (156)
Q Consensus       101 ~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (156)
                      +++| .+++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|+||++
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~   54 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLH   54 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHH
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHH
Confidence            4444 556666666666666666666666666666666666666666666665

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.52  E-value=2.2e-14  Score=73.62  Aligned_cols=48  Identities=50%  Similarity=0.756  Sum_probs=18.6

Q ss_pred             cccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHH
Q 031607           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (156)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a  121 (156)
                      .+.+|..|.||||+|+..++.+++++|++.|++++.+|..|+||+++|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            444455555555555555555555555555555555555555555544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.51  E-value=1.5e-14  Score=109.25  Aligned_cols=142  Identities=27%  Similarity=0.317  Sum_probs=124.8

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (156)
                      +-.++|..||..|.-|.++.|+.+|  +++..+|..|++||.+|+..|+..+++.|+....+.  ....|+.+.|+|.+|
T Consensus       756 n~~t~LT~acaggh~e~vellv~rg--aniehrdkkgf~plImaatagh~tvV~~llk~ha~v--eaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRG--ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV--EAQSDRTKDTMLSLA  831 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhc--ccccccccccchhhhhhcccCchHHHHHHHhhhhhh--hhhcccccCceEEEe
Confidence            4578999999999999999999998  899999999999999999999999999999877663  235577888999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccc--ccccccccCC
Q 031607           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--KACWLHSIAP  154 (156)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~--~~~~t~l~~~  154 (156)
                      |..|..+++++|+..|++...++-...||+..|..-|+.+++..|+.+|++++.+-  +.|..||+.+
T Consensus       832 csggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmla  899 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLA  899 (2131)
T ss_pred             cCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhh
Confidence            99999999999999999988888888899999999999999999999998887654  7778888754

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=6.2e-13  Score=93.63  Aligned_cols=101  Identities=27%  Similarity=0.336  Sum_probs=87.6

Q ss_pred             HHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHH
Q 031607           49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK  128 (156)
Q Consensus        49 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~  128 (156)
                      |.-|+.-|.++.|+.++-.-.+   ....+..|.|+||-|+-.||.+++++|++.|+++|..|..|+||||.|+..++..
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D---pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD---PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC---CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence            4557788999999998866555   5667789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCccc-cccccccc
Q 031607          129 IVELLISRGAKINSKD-KACWLHSI  152 (156)
Q Consensus       129 ~~~~Ll~~g~~~~~~~-~~~~t~l~  152 (156)
                      +++.|++.|+-+...- .++.|+.-
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~e  655 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAE  655 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhh
Confidence            9999999998886533 55556543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.35  E-value=8.8e-12  Score=82.03  Aligned_cols=105  Identities=32%  Similarity=0.345  Sum_probs=93.5

Q ss_pred             CchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcC-CCCcHHHHHHH
Q 031607           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAAS  123 (156)
Q Consensus        45 g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~a~~  123 (156)
                      ...||..++-.+..+.+..|+.-...   .+.+|..|.++|..|+..|+.+.++.|++.|+++|.... .+.|||+.|+-
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~---vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQ---VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhh---hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            46789999999999988888865443   788999999999999999999999999999999987544 56799999999


Q ss_pred             CCCHHHHHHHHHcCCCCCccccccccccc
Q 031607          124 KGWLKIVELLISRGAKINSKDKACWLHSI  152 (156)
Q Consensus       124 ~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (156)
                      .|+.++.++|++.|+.....|.-|.|+..
T Consensus        89 SGn~dvcrllldaGa~~~~vNsvgrTAaq  117 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMYLVNSVGRTAAQ  117 (396)
T ss_pred             cCCchHHHHHHhccCccccccchhhhHHH
Confidence            99999999999999999999999998753

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.35  E-value=6.4e-13  Score=100.70  Aligned_cols=146  Identities=25%  Similarity=0.340  Sum_probs=82.1

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhcc-CCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLS-LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~-~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      ++-++.-|.+||..|+..|+...|+.|+...  ++++ ..|..+.|+|.+||-.|+.++++.|+..+..   ...++...
T Consensus       783 iehrdkkgf~plImaatagh~tvV~~llk~h--a~veaQsdrtkdt~lSlacsggr~~vvelLl~~gan---kehrnvsD  857 (2131)
T KOG4369|consen  783 IEHRDKKGFVPLIMAATAGHITVVQDLLKAH--ADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGAN---KEHRNVSD  857 (2131)
T ss_pred             ccccccccchhhhhhcccCchHHHHHHHhhh--hhhhhhcccccCceEEEecCCCcchHHHHHHHhhcc---ccccchhh
Confidence            4455666666666666666666666666655  2222 2455666666666666666666666666554   33444455


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcC--CCC----------------------------------cHHHHHHHCC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKND--GGR----------------------------------TALHYAASKG  125 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~--~~~----------------------------------~~l~~a~~~~  125 (156)
                      +||+..|...|..++++.|+..|..++.+..  .|-                                  |+|.+|+..|
T Consensus       858 ytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqg  937 (2131)
T KOG4369|consen  858 YTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQG  937 (2131)
T ss_pred             cCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccC
Confidence            5555555555555555555555544443321  233                                  4444444445


Q ss_pred             CHHHHHHHHHcCCCCCcccccccccccC
Q 031607          126 WLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       126 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ..+++.+|+...+++..|-+.|.|||+-
T Consensus       938 r~evv~lLLa~~anvehRaktgltplme  965 (2131)
T KOG4369|consen  938 RPEVVFLLLAAQANVEHRAKTGLTPLME  965 (2131)
T ss_pred             cchHHHHHHHHhhhhhhhcccCCcccch
Confidence            5555555555555555555555666553

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.23  E-value=7.8e-11  Score=84.16  Aligned_cols=122  Identities=25%  Similarity=0.386  Sum_probs=107.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcC
Q 031607           13 DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (156)
Q Consensus        13 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~   92 (156)
                      .|..|+..+++-.++..-..+  ..+-.++.+..+.||||+.-|+-++++|+++++. +++.+..+..|.|.||.|+-.+
T Consensus       869 eil~av~~~D~~klqE~h~~g--g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p-~elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLNG--GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGP-SELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhcC--CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCC-HHHHHHHhhhhhHHHHHHHHhc
Confidence            477888888887777776666  5677788999999999999999999999999975 4456777889999999999999


Q ss_pred             CHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC
Q 031607           93 NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (156)
Q Consensus        93 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g  137 (156)
                      +..+.++|++.|+.+.-.|..|.||-.-|.+.|..+++.||-...
T Consensus       946 ~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             chHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            999999999999999999999999999999999999999986653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.22  E-value=2.5e-11  Score=89.82  Aligned_cols=97  Identities=27%  Similarity=0.430  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccccc-CCCchHHHHHHhcCCHHHHHHHHHc
Q 031607           25 TFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASIGNVTIVEMLLSK  103 (156)
Q Consensus        25 ~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~  103 (156)
                      -++-++.+.+....+++|..|+++||+|+..+..++++||+++|.+   +..+| .+|+|+||-|+.+|+++|+..|+++
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid---v~vqD~ESG~taLHRaiyyG~idca~lLL~~  108 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID---VFVQDEESGYTALHRAIYYGNIDCASLLLSK  108 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce---eeeccccccchHhhHhhhhchHHHHHHHHhc
Confidence            4666666655566788899999999999999999999999999887   55554 5899999999999999999999999


Q ss_pred             CCCCccCcCCCCcHHHHHHHC
Q 031607          104 GADVNLKNDGGRTALHYAASK  124 (156)
Q Consensus       104 ~~~~~~~~~~~~~~l~~a~~~  124 (156)
                      |..+.++|+.|..||...++.
T Consensus       109 g~SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  109 GRSLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             CCceEEecccCCCHHHHHhhc
Confidence            999999999999999988873

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.22  E-value=2.8e-11  Score=84.37  Aligned_cols=93  Identities=25%  Similarity=0.256  Sum_probs=75.4

Q ss_pred             CCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHc-CCCCccCcCCCCcHHHHHH
Q 031607           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAA  122 (156)
Q Consensus        44 ~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~a~  122 (156)
                      ++...+++|+..|..+.++.+.-.+.+   +..+|.+.+|+||+|+..|+++++++|++. +.+++.+|.+|.|||.-|.
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D---~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMD---LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhccc---ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            355678888888888888887777766   777888888888888888888888888876 6778888888888888888


Q ss_pred             HCCCHHHHHHHHHcCCC
Q 031607          123 SKGWLKIVELLISRGAK  139 (156)
Q Consensus       123 ~~~~~~~~~~Ll~~g~~  139 (156)
                      .+++.+++++|-+....
T Consensus       582 ~F~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQYP  598 (622)
T ss_pred             hcCcHHHHHHHHHHhcc
Confidence            88888888888775543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.19  E-value=3.3e-11  Score=84.07  Aligned_cols=91  Identities=32%  Similarity=0.421  Sum_probs=82.3

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (156)
                      .+...+++|++.|++..++.+.-++  .+++.+|.+.+|+||.|+.-|+.+++++|++.....  ...+|.+|+|||..|
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g--~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~--~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQG--MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD--PDPKDRWGRTPLDDA  580 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhc--ccccccccccchhheeecccCceeHHHHHHHHHcCC--CChhhccCCCcchHh
Confidence            4567899999999999999998887  789999999999999999999999999999874332  678899999999999


Q ss_pred             HhcCCHHHHHHHHHc
Q 031607           89 ASIGNVTIVEMLLSK  103 (156)
Q Consensus        89 ~~~~~~~~~~~l~~~  103 (156)
                      ..+++.+++++|-+.
T Consensus       581 ~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEA  595 (622)
T ss_pred             HhcCcHHHHHHHHHH
Confidence            999999999999876

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.09  E-value=4.1e-11  Score=88.71  Aligned_cols=80  Identities=31%  Similarity=0.387  Sum_probs=75.6

Q ss_pred             cccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcC-CCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccccc
Q 031607           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSI  152 (156)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (156)
                      .+.+|..|++++|+++..+..++++||+++|+++..+|. .|.||||-|..+|+.+++-.|+++|..+.++|++|..||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            667889999999999999999999999999999999887 7899999999999999999999999999999999999986


Q ss_pred             C
Q 031607          153 A  153 (156)
Q Consensus       153 ~  153 (156)
                      .
T Consensus       125 ~  125 (1267)
T KOG0783|consen  125 F  125 (1267)
T ss_pred             H
Confidence            3

>PF13606 Ank_3: Ankyrin repeat

Probab=99.06  E-value=4.2e-10  Score=49.85  Aligned_cols=29  Identities=48%  Similarity=0.776  Sum_probs=22.6

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHcCCCCC
Q 031607          113 GGRTALHYAASKGWLKIVELLISRGAKIN  141 (156)
Q Consensus       113 ~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~  141 (156)
                      +|+||||+|++.|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36778888888888888888888887775

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.03  E-value=8.4e-10  Score=50.16  Aligned_cols=32  Identities=53%  Similarity=0.894  Sum_probs=25.1

Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHcCCCCCcccc
Q 031607          114 GRTALHYAASKGWLKIVELLISRGAKINSKDK  145 (156)
Q Consensus       114 ~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  145 (156)
                      |.||||+|+..++.+++++|+++|++++.+|+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            67888888888888888888888888877663

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.01  E-value=3.6e-09  Score=74.55  Aligned_cols=95  Identities=33%  Similarity=0.458  Sum_probs=79.7

Q ss_pred             CCCCCCchH------HHHHHHcCChHHHHHHHhhcccccccccc-cCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcC
Q 031607           40 LRNDDDRTL------LHVAASCGHPEVVEILLSVDESANVVNAV-DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND  112 (156)
Q Consensus        40 ~~~~~g~~~------l~~A~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~  112 (156)
                      .+|.+|-+.      ||.+++.++.++.-.|+..|+.   .+.- ...|.||||+|++.|+.--+++|+-+|+++...|.
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~---~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~  198 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQ---ANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDS  198 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccc---cCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCC
Confidence            345555443      8999999999988888888887   4433 34689999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHcC
Q 031607          113 GGRTALHYAASKGWLKIVELLISRG  137 (156)
Q Consensus       113 ~~~~~l~~a~~~~~~~~~~~Ll~~g  137 (156)
                      .|.||+.+|...|+.++++.|++..
T Consensus       199 ~GmtP~~~AR~~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHELAERLVEIQ  223 (669)
T ss_pred             CCCcHHHHHHhcCchHHHHHHHHHH
Confidence            9999999999999999888776643

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.95  E-value=4.5e-09  Score=75.27  Aligned_cols=92  Identities=28%  Similarity=0.416  Sum_probs=78.7

Q ss_pred             HHHHHHcCChHHHHHHHhhccccccccc-ccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCH
Q 031607           49 LHVAASCGHPEVVEILLSVDESANVVNA-VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL  127 (156)
Q Consensus        49 l~~A~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~  127 (156)
                      |.-|+...+...+-.|+.++...+..+. .+..|+|+||.|+..|+..+.++|+-+|+++..+|..|.|+|.||.+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            5556667778888889988876554333 355779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCC
Q 031607          128 KIVELLISRGAKI  140 (156)
Q Consensus       128 ~~~~~Ll~~g~~~  140 (156)
                      +|+..|+++|+.-
T Consensus       708 ec~d~llq~gcp~  720 (749)
T KOG0705|consen  708 ECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999998654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.94  E-value=3e-09  Score=76.29  Aligned_cols=97  Identities=24%  Similarity=0.281  Sum_probs=87.5

Q ss_pred             ccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCch
Q 031607            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (156)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~   83 (156)
                      -+.+....+.||+|+++|+-++|+++++++.+.-++..++.|.|+||.|+..++..+..+|++.+..   ...+|..|.|
T Consensus       893 l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagas---l~ktd~kg~t  969 (1004)
T KOG0782|consen  893 LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGAS---LRKTDSKGKT  969 (1004)
T ss_pred             EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchh---heecccCCCC
Confidence            3456667889999999999999999999997778888899999999999999999999999998876   7788999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHc
Q 031607           84 PIHSAASIGNVTIVEMLLSK  103 (156)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~  103 (156)
                      |-.-|-+.++.+...||-.+
T Consensus       970 p~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  970 PQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hHHHHHhcCCchHHHHHhhh
Confidence            99999999999999998765

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.89  E-value=8.9e-09  Score=73.80  Aligned_cols=95  Identities=24%  Similarity=0.297  Sum_probs=81.2

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHHHhhhhccC--CCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSL--RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (156)
Q Consensus        11 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~--~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (156)
                      ..-|..|+...++.++..|+.++....++.  .+.+|.|+||+||+.|++.+.+.|+=.+.+   ...+|..|+|+|+||
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d---v~~rda~g~t~l~ya  701 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD---VMARDAHGRTALFYA  701 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc---ceecccCCchhhhhH
Confidence            446778888899999999999885544443  356789999999999999999999977777   678899999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCc
Q 031607           89 ASIGNVTIVEMLLSKGADVN  108 (156)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~  108 (156)
                      ...+..+|+..|+.+|+..+
T Consensus       702 r~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  702 RQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hhcccHHHHHHHHHcCCCcc
Confidence            99999999999999988543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.88  E-value=1e-08  Score=72.69  Aligned_cols=89  Identities=35%  Similarity=0.499  Sum_probs=76.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhc
Q 031607           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (156)
Q Consensus        12 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~   91 (156)
                      .++|.+....+.+.+...+.......++.+|..|.||||+|+..|+...++.|+..+++   +..++..|+++||.|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad---v~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD---VSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC---ccccccccccHHHHHHHc
Confidence            46899999999998877666555678888999999999999999999999999998887   777889999999999999


Q ss_pred             CCHHHHHHHHHc
Q 031607           92 GNVTIVEMLLSK  103 (156)
Q Consensus        92 ~~~~~~~~l~~~  103 (156)
                      |+..++..++.+
T Consensus        99 g~~q~i~~vlr~  110 (560)
T KOG0522|consen   99 GNEQIITEVLRH  110 (560)
T ss_pred             CCHHHHHHHHHH
Confidence            998887666643

>PF13606 Ank_3: Ankyrin repeat

Probab=98.85  E-value=6.2e-09  Score=46.04  Aligned_cols=26  Identities=42%  Similarity=0.516  Sum_probs=16.5

Q ss_pred             CchHHHHHHHcCChHHHHHHHhhccc
Q 031607           45 DRTLLHVAASCGHPEVVEILLSVDES   70 (156)
Q Consensus        45 g~~~l~~A~~~~~~~~~~~ll~~~~~   70 (156)
                      |+||||+||..|+.+++++|++++.+
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            56666666666666666666665544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.84  E-value=8.2e-09  Score=46.84  Aligned_cols=26  Identities=42%  Similarity=0.672  Sum_probs=13.8

Q ss_pred             CchHHHHHHHcCChHHHHHHHhhccc
Q 031607           45 DRTLLHVAASCGHPEVVEILLSVDES   70 (156)
Q Consensus        45 g~~~l~~A~~~~~~~~~~~ll~~~~~   70 (156)
                      |+||||+|+..++.+++++|+..+.+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            45555555555555555555554444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.83  E-value=2.6e-08  Score=70.33  Aligned_cols=86  Identities=27%  Similarity=0.322  Sum_probs=73.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhhccCCC-CCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHh
Q 031607           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (156)
Q Consensus        12 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~-~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~   90 (156)
                      .-||..++.|+.++-..|+..|  ++.|.-+ +.|.||||.|++.|...-++.|+-.|++   +...|..|.||+.+|..
T Consensus       135 rQLhasvRt~nlet~LRll~lG--A~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD---~~a~d~~GmtP~~~AR~  209 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLG--AQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD---PGAQDSSGMTPVDYARQ  209 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcc--cccCCCCcccCCchhHHHHhccchhhhhHHhhccCC---CCCCCCCCCcHHHHHHh
Confidence            4689999999999999999998  4555544 4699999999999999999999999988   78889999999999999


Q ss_pred             cCCHHHHHHHHH
Q 031607           91 IGNVTIVEMLLS  102 (156)
Q Consensus        91 ~~~~~~~~~l~~  102 (156)
                      .||-++.+-|++
T Consensus       210 ~gH~~laeRl~e  221 (669)
T KOG0818|consen  210 GGHHELAERLVE  221 (669)
T ss_pred             cCchHHHHHHHH
Confidence            998776555444

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.81  E-value=2.8e-08  Score=70.59  Aligned_cols=89  Identities=33%  Similarity=0.468  Sum_probs=74.4

Q ss_pred             hHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCC
Q 031607           47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW  126 (156)
Q Consensus        47 ~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~  126 (156)
                      .|+|+++.....+-+...+... ....++..|..|.||||.|+..|+.+.++.|+..|+++..+++.|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~-~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAK-VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhh-hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC
Confidence            4699999888777665554443 222377889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHc
Q 031607          127 LKIVELLISR  136 (156)
Q Consensus       127 ~~~~~~Ll~~  136 (156)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            9877666654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.79  E-value=6.8e-08  Score=72.10  Aligned_cols=126  Identities=25%  Similarity=0.280  Sum_probs=101.0

Q ss_pred             ccCcHHHHHHHhcCCHHHHHHHHHHHhh--hhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607            8 TIKDKDLFKAAETGDSSTFKSLSKQQLL--KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (156)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~--~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l   85 (156)
                      ..+......|++.|++..|+..++....  .++|..|.=|+++++.|+.+.+.++.++|++....   .       ..+|
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~---~-------gdAL   92 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE---E-------GDAL   92 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc---c-------chHH
Confidence            3456677899999999999999997543  56778899999999999999999999999977533   1       3367


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCc----------cCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcc
Q 031607           86 HSAASIGNVTIVEMLLSKGADVN----------LKNDGGRTALHYAASKGWLKIVELLISRGAKINSK  143 (156)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~  143 (156)
                      -+|+..+..+.++.++.+-....          ..-.-+.||+..|+..+++||++.|+++|+.+...
T Consensus        93 L~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   93 LLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            88999999999999998622110          11123569999999999999999999999888654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.60  E-value=1.6e-07  Score=64.47  Aligned_cols=58  Identities=26%  Similarity=0.382  Sum_probs=54.2

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccc
Q 031607           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDES   70 (156)
Q Consensus        11 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~   70 (156)
                      .-.|..||+.|+++.|++|++-|  .++|..|....+||.+|+..||.+++++|+++|+.
T Consensus        37 f~elceacR~GD~d~v~~LVetg--vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETG--VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhC--CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            45789999999999999999976  89999999999999999999999999999999875

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.50  E-value=7.1e-07  Score=55.85  Aligned_cols=65  Identities=14%  Similarity=0.179  Sum_probs=40.0

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhh
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV   67 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~   67 (156)
                      +||.+|.+|.|++++|+..|+.+.+.+|+.++ -+.+...|..|.+.+.+|=+.|..+.+..|.+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg-~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRG-VAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccC-cccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            45666666666666666666666666666665 245555566666666666666666666666554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.38  E-value=2e-06  Score=59.37  Aligned_cols=69  Identities=28%  Similarity=0.301  Sum_probs=59.2

Q ss_pred             chHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcH
Q 031607           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA  117 (156)
Q Consensus        46 ~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  117 (156)
                      +--|.+||+.|..+.+++|++.|.+   +|..|.+..+||.+|...||..++++|+++|+.-..-...|..+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn---VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN---VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC  105 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC---cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence            5668999999999999999998877   88999999999999999999999999999997655434455443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.30  E-value=2.8e-06  Score=53.22  Aligned_cols=74  Identities=23%  Similarity=0.206  Sum_probs=63.5

Q ss_pred             hhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCc
Q 031607           36 KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN  111 (156)
Q Consensus        36 ~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~  111 (156)
                      .+++.+|..|||+++.|+.-|..+.+.||+.++...  +...+.++.+.+..|-+.|..++++.|.+.-.+-...+
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~--vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF--VGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM   76 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCccc--ccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence            578899999999999999999999999999998432  67789999999999999999999999998755443333

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.24  E-value=3.5e-06  Score=64.26  Aligned_cols=88  Identities=36%  Similarity=0.490  Sum_probs=66.5

Q ss_pred             CCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHH
Q 031607           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (156)
Q Consensus        42 ~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a  121 (156)
                      -..|.+++|.|+..+..-+.++|+.++.+   ++..+..|.+|+|.+...|+......++++|++.+..+..|.+|+.+|
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~---vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGAD---VNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCc---chhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence            34467788888888888888888877777   777778888888888888888888888888888887777888888888


Q ss_pred             HHCCCHHHHHH
Q 031607          122 ASKGWLKIVEL  132 (156)
Q Consensus       122 ~~~~~~~~~~~  132 (156)
                      ....+.++.-+
T Consensus       730 ~~~~~~d~~~l  740 (785)
T KOG0521|consen  730 MEAANADIVLL  740 (785)
T ss_pred             hhhccccHHHH
Confidence            66655444333

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.20  E-value=5.2e-06  Score=62.46  Aligned_cols=101  Identities=19%  Similarity=0.207  Sum_probs=80.8

Q ss_pred             CCcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc-------
Q 031607            1 MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV-------   73 (156)
Q Consensus         1 ~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~-------   73 (156)
                      +++|-.|..|.+.++.|+.+.+.++++.|+++.    ...     ..+|.+|+..|..++++.++.+.....-       
T Consensus        53 lninc~d~lGr~al~iai~nenle~~eLLl~~~----~~~-----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~  123 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQELLLDTS----SEE-----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDA  123 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHHHHhcCc----ccc-----chHHHHHHHHHHHHHHHHHHhcccccchhcccccc
Confidence            357888899999999999999999999999976    122     4488999999999999999976543210       


Q ss_pred             cccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccC
Q 031607           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK  110 (156)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~  110 (156)
                      ....-.-+.||+..|+..++.+++++|+.+|+.+..+
T Consensus       124 ~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  124 NSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             CcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            1122345789999999999999999999998876554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.17  E-value=1.3e-06  Score=66.48  Aligned_cols=76  Identities=38%  Similarity=0.455  Sum_probs=72.1

Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      ..|.+++|.|+..+.....++|++.|.+++.++..|.+|+|.+...|+...+..|+++|++.++.+..|.+|+..+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence            3578999999999999999999999999999999999999999999999999999999999999999999999764

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.09  E-value=4.4e-06  Score=64.06  Aligned_cols=122  Identities=22%  Similarity=0.237  Sum_probs=83.1

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHH-HhhhhccCCCCCCchHHHHHHHcCChHHHHHHH-hhcccccccccccCCCchHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQ-QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL-SVDESANVVNAVDEEGWAPIH   86 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~-~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~l~   86 (156)
                      -+++.+|.++..+....++.+++. +  ......|.+|...+|+ |..++.++.-+++ -.+..   ++.+|..|+||||
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~--~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~a---i~i~D~~G~tpL~  646 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAG--SGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVA---IDIRDRNGWTPLH  646 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccc--cCchhhcccCCChhhH-hhhcCCceeEEEEeecccc---cccccCCCCcccc
Confidence            467888888888888888888875 3  3444456677777777 4444444433332 12223   6778888888999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCcc------CcCCCCcHHHHHHHCCCHHHHHHHHHc
Q 031607           87 SAASIGNVTIVEMLLSKGADVNL------KNDGGRTALHYAASKGWLKIVELLISR  136 (156)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~l~~a~~~~~~~~~~~Ll~~  136 (156)
                      +|+..|+..++..|++.|.....      ..-.|.|+...|...|+..+..+|-+.
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            98888888888888876554322      122477888888888887777776554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.06  E-value=7.1e-06  Score=62.95  Aligned_cols=101  Identities=27%  Similarity=0.297  Sum_probs=75.4

Q ss_pred             hccCCCCCCchHHHHHHHcCChHHHHHHHhh-cccccccccccCCCchHHHHHHhcCCHHHHHHHH-HcCCCCccCcCCC
Q 031607           37 SLSLRNDDDRTLLHVAASCGHPEVVEILLSV-DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGG  114 (156)
Q Consensus        37 ~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~-~~~~~~~~~~~~~  114 (156)
                      ........|++.+|+++..+..-.+..+++- +..   ....+..+...+|.|+. ++.+..-+++ ..|..++++|..|
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~---~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i~D~~G  641 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG---DLELDRDGQGVIHFCAA-LGYEWAFLPISADGVAIDIRDRNG  641 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccC---chhhcccCCChhhHhhh-cCCceeEEEEeecccccccccCCC
Confidence            3444556789999999999987777777764 332   34456666667777554 4444444444 4588899999999


Q ss_pred             CcHHHHHHHCCCHHHHHHHHHcCCCCC
Q 031607          115 RTALHYAASKGWLKIVELLISRGAKIN  141 (156)
Q Consensus       115 ~~~l~~a~~~~~~~~~~~Ll~~g~~~~  141 (156)
                      +||||+|..+|+..++..|++.|++-.
T Consensus       642 ~tpL~wAa~~G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  642 WTPLHWAAFRGREKLVASLIELGADPG  668 (975)
T ss_pred             CcccchHhhcCHHHHHHHHHHhccccc
Confidence            999999999999999999998776654

>smart00248 ANK ankyrin repeats

Probab=97.45  E-value=0.00045  Score=29.02  Aligned_cols=27  Identities=56%  Similarity=0.904  Sum_probs=17.3

Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHcCCCC
Q 031607          114 GRTALHYAASKGWLKIVELLISRGAKI  140 (156)
Q Consensus       114 ~~~~l~~a~~~~~~~~~~~Ll~~g~~~  140 (156)
                      +.+|+++++..+..++++.|++++.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            446666666666666666666666544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.41  E-value=0.0028  Score=41.33  Aligned_cols=117  Identities=21%  Similarity=0.237  Sum_probs=81.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccC----CCchHHHH
Q 031607           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE----EGWAPIHS   87 (156)
Q Consensus        12 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~----~~~~~l~~   87 (156)
                      ..|-.|+..-+.+.+..++....         .-.+++-+++.++..+++.+|+.+..    ...+|.    .+..-+.+
T Consensus       155 isledAV~AsN~~~i~~~VtdKk---------dA~~Am~~si~~~K~dva~~lls~f~----ft~~dv~~~~~~~ydieY  221 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKK---------DAHQAMWLSIGNAKEDVALYLLSKFN----FTKQDVASMEKELYDIEY  221 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchH---------HHHHHHHHHhcccHHHHHHHHHhhcc----eecchhhhcCcchhhHHH
Confidence            34566777777777776665431         12467888888899999999997643    222221    12223445


Q ss_pred             HHhc--CCHHHHHHHHHcC-CCCcc---CcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCC
Q 031607           88 AASI--GNVTIVEMLLSKG-ADVNL---KNDGGRTALHYAASKGWLKIVELLISRGAKIN  141 (156)
Q Consensus        88 a~~~--~~~~~~~~l~~~~-~~~~~---~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~  141 (156)
                      +...  .+..++++++.+| ++++.   +-+.|.|.|..|..++..+++.+|+++|+-..
T Consensus       222 ~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  222 LLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             HHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcccc
Confidence            4433  4677889999997 44443   34589999999999999999999999998543

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.33  E-value=0.00059  Score=49.09  Aligned_cols=39  Identities=33%  Similarity=0.376  Sum_probs=24.8

Q ss_pred             CcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          115 RTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       115 ~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .|+||+|+..|...++.+|++.|+|...+|..|.||...
T Consensus       431 sT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~l  469 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSL  469 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccc
Confidence            356666666666666666666666666666666666544

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.30  E-value=0.00072  Score=48.66  Aligned_cols=65  Identities=31%  Similarity=0.334  Sum_probs=51.1

Q ss_pred             hHHHHHHHhhcccccc---cccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHH
Q 031607           58 PEVVEILLSVDESANV---VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (156)
Q Consensus        58 ~~~~~~ll~~~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~  122 (156)
                      ...+.+|.+++..++.   ....+....|+||+|+.+|..+++.+|++.|+++.++|..|.||+..+.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            5567788776654321   1223455789999999999999999999999999999999999988876

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.19  E-value=0.0072  Score=38.18  Aligned_cols=112  Identities=19%  Similarity=0.168  Sum_probs=65.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccc-------cccc-------
Q 031607           13 DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVV-------NAVD-------   78 (156)
Q Consensus        13 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~-------~~~~-------   78 (156)
                      .+..|++.+-+.+++++-+...  .   .-...++.+-.||+..+.++++|+-..-.-.+..       ..+|       
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~--~---~~~~~q~LFElAC~~qkydiV~WI~qnL~i~~~~~iFdIA~~~kDlsLyslG  123 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLE--N---ERYLNQELFELACEEQKYDIVKWIGQNLHIYNPEDIFDIAFAKKDLSLYSLG  123 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhh--c---chhHHHHHHHHHHHHccccHHHHHhhccCCCCchhhhhhhhhccchhHHHHH
Confidence            4566777777888887766541  1   1134577888899999999999985433221110       0000       


Q ss_pred             ---------CC-C-------chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHH
Q 031607           79 ---------EE-G-------WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS  135 (156)
Q Consensus        79 ---------~~-~-------~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  135 (156)
                               .. +       ..-+..|+..|-..++...+++|.+++.      +.+..|+.+++..+..+++.
T Consensus       124 Y~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  124 YKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence                     00 0       0124556666666666666666665543      56777777777777766654

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=97.15  E-value=0.0013  Score=27.49  Aligned_cols=25  Identities=48%  Similarity=0.624  Sum_probs=15.9

Q ss_pred             CchHHHHHHHcCChHHHHHHHhhcc
Q 031607           45 DRTLLHVAASCGHPEVVEILLSVDE   69 (156)
Q Consensus        45 g~~~l~~A~~~~~~~~~~~ll~~~~   69 (156)
                      |.+|+|+|+..++.++++.|+..+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            5566666666666666666665543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=96.67  E-value=0.0098  Score=32.20  Aligned_cols=49  Identities=18%  Similarity=0.154  Sum_probs=35.4

Q ss_pred             CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhh
Q 031607           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV   67 (156)
Q Consensus        10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~   67 (156)
                      ....+..|+..|+.+.++.+++.+   .+   +   ...+..|+...+.++++||++.
T Consensus         6 t~~tl~~Ai~GGN~eII~~c~~~~---~~---~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    6 TKKTLEYAIIGGNFEIINICLKKN---KP---D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHh---cc---H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            355678888888888888887654   11   1   4467888888888888888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.12  E-value=0.4  Score=31.72  Aligned_cols=96  Identities=13%  Similarity=0.087  Sum_probs=66.5

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCC----CCCchHHHHHHHc--CChHHHHHHHhhcccc-cccccccCCC
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN----DDDRTLLHVAASC--GHPEVVEILLSVDESA-NVVNAVDEEG   81 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~----~~g~~~l~~A~~~--~~~~~~~~ll~~~~~~-~~~~~~~~~~   81 (156)
                      .-.++|..++..+.-+++.+|+.+.   .+..+|    +.+.--+.|+...  ....++++++++|-.. +..=.+-.+|
T Consensus       178 dA~~Am~~si~~~K~dva~~lls~f---~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSG  254 (284)
T PF06128_consen  178 DAHQAMWLSIGNAKEDVALYLLSKF---NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSG  254 (284)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhc---ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCc
Confidence            3457888899888888889998864   222222    1233345555432  3677899999887321 1111345689


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADV  107 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~  107 (156)
                      .|-|.-|+++++.+++..|+++|+..
T Consensus       255 dtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  255 DTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             chHHHhHHhcCcHHHHHHHHHcCccc
Confidence            99999999999999999999998853

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.91  E-value=0.11  Score=28.02  Aligned_cols=48  Identities=21%  Similarity=0.238  Sum_probs=38.6

Q ss_pred             chHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHc
Q 031607           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK  103 (156)
Q Consensus        46 ~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~  103 (156)
                      ...+.+|+..|+.++++.+++....          ....+..|+...+-++++||++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~----------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP----------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc----------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            4568999999999999999865422          13468899999999999999976

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=84.85  E-value=3.1  Score=26.74  Aligned_cols=83  Identities=16%  Similarity=0.075  Sum_probs=53.8

Q ss_pred             cCcHHHHHHHhcCCHHHHH----HHHHHHhhhhccCCCCC--CchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            9 IKDKDLFKAAETGDSSTFK----SLSKQQLLKSLSLRNDD--DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~----~ll~~~~~~~~~~~~~~--g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      ...+..-.|+..+|+++..    .+++...+.  ...|..  -..-|..|+..|-.+.+...+..|..   .      ..
T Consensus       103 ~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~--~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~---~------~~  171 (192)
T PF03158_consen  103 NPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSE--HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGN---V------DI  171 (192)
T ss_pred             CchhhhhhhhhccchhHHHHHHHHHHhhcccc--cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCc---c------cH
Confidence            4456677888888877653    233332111  111110  11337889999999888888888765   2      22


Q ss_pred             hHHHHHHhcCCHHHHHHHHH
Q 031607           83 APIHSAASIGNVTIVEMLLS  102 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~  102 (156)
                      +.+..|+.+++..++.+++.
T Consensus       172 ~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  172 IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHhhHHHHHHHhhc
Confidence            78999999999999988763

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-22
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-21
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-20
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-20
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-20
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-20
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-20
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-20
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-20
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-20
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-20
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-18
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-18
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-18
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-18
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-18
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-18
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-18
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-18
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-18
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		8e-18
1uoh_A	226	Human Gankyrin Length = 226		9e-18
1uoh_A	226	Human Gankyrin Length = 226		8e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-17
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		8e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-17
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-17
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-17
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		7e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-17
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-17
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		7e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		7e-17
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-17
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-15
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-15
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-14
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-14
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		7e-14
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-13
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-13
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-13
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-13
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-13
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-12
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-12
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-12
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-12
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-12
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-12
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		8e-12
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		1e-11
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-11
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-11
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-11
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-11
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-10
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		6e-10
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-09
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-09
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-09
2xen_A	91	Structural Determinants For Improved Thermal Stabil		9e-09
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-08
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-08
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-08
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-08
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-08
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-08
1ycs_B	239	P53-53bp2 Complex Length = 239		3e-08
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		4e-08
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		4e-08
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-08
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		5e-08
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		7e-07
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-06
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-06
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		4e-06
3kea_A	285	Structure Function Studies Of Vaccinia Virus Host-R		6e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-06
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		4e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		4e-05
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		8e-05
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		8e-05
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		9e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		9e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		9e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		1e-04
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		1e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		1e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		1e-04
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		1e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		1e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-04
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		4e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		5e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		5e-04
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		7e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		8e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 70/101 (69%), Gaps = 3/101 (2%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D RT LH AA  GH E+V++L+S       VNA D +G  P+H AA  G+  IV++L+SK
Sbjct: 36  DGRTPLHYAAKEGHKEIVKLLIS---KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GADVN K+  GRT LHYAA +G  +IV+LLIS+GA +N+ D
Sbjct: 93  GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD 133

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 71/105 (67%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D   T LH+AA  GHPE+VE+LL   +    VNA D +GW P+H AA  G++ IVE+L
Sbjct: 43  HDDQGSTPLHLAAWIGHPEIVEVLL---KHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GADVN ++  G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDK 144

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 3/101 (2%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D RT LH AA  GH EVV++L+S       VNA D +G  P+H AA  G+  +V++L+SK
Sbjct: 36  DGRTPLHHAAENGHKEVVKLLIS---KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GADVN K+  GRT LH+AA  G  ++V+LLIS+GA +N+ D
Sbjct: 93  GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D  T LH+AA  GH E+VE+LL   ++   VNA D++G+ P+H AA  G++ IVE+L
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GADVN K+  G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 88  LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D  T LH+AA  GH E+VE+LL   ++   VNA D++G+ P+H AA  G++ IVE+L
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GADVN K+  G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 88  LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D  T LH+AA  GH E+VE+LL   ++   VNA D++G+ P+H AA  G++ IVE+L
Sbjct: 43  KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GADVN K+  G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 66/101 (65%), Gaps = 3/101 (2%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D RT LH AA  GH E+V++LLS        NA D +G  P+H AA  G+  IV++LLSK
Sbjct: 36  DGRTPLHYAAENGHKEIVKLLLS---KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GAD N K+  GRT LHYAA  G  +IV+LL+S+GA  N+ D
Sbjct: 93  GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT LH+AA+ GH E+VE+LL    +   VNAVD  G  P+H AAS+G++ IVE+LL  GA
Sbjct: 36  RTPLHMAAAVGHLEIVEVLL---RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           DVN K+  G T L+ AA  G L+IVE+L+  GA +N++DK
Sbjct: 93  DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDK 132

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 70/102 (68%), Gaps = 3/102 (2%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           + RT LH+AA  GH EVV++LL   E+   VNA D+ G  P+H AA  G++ +V++LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           GADVN K+  GRT LH AA  G L++V+LL+  GA +N+KDK
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 92.8 bits (229), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           ++D  T LH+AAS GH E+VE+LL   ++   VNA D  G  P+H AA+ G++ IVE+LL
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLL---KNGADVNASDLTGITPLHLAAATGHLEIVEVLL 100
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GADVN  ++ G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 101 KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDK 144

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 92.4 bits (228), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 69/99 (69%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   ++   VNA D  G  P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAAYWGHLEIVEVLL---KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN K+D G T LH AA++G L+IVE+L+  GA +N++DK
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDK 144

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+  + GH E++E+LL   + A  VNA D+ GW P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLVVNNGHLEIIEVLL---KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   ++   VNA+D  G  P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAARVGHLEIVEVLL---KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 106 VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDK 144

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 67/99 (67%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA+ GH E+VE+LL   +    VNA+D  G  P+H AA IG++ IVE+LL  GAD
Sbjct: 49  TPLHLAATYGHLEIVEVLL---KHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D  +T LH+AA  GH E+VE+LL   +    VNA D+ G  P+H AA  G++ IVE+L
Sbjct: 43  EDDSGKTPLHLAAIKGHLEIVEVLL---KHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GADVN  +  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 100 LKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDK 144

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   ++   VNA D  G  P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDK 144

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 67/99 (67%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA+ GH E+VE+LL   +    VNA+D  G  P+H AA IG++ IVE+LL  GAD
Sbjct: 49  TPLHLAATYGHLEIVEVLL---KHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
            T LH+AA  GH E+VE+LL        VNA D  G  P+H AA  G++ IVE+LL  GA
Sbjct: 48  HTPLHLAAKTGHLEIVEVLLKYGAD---VNAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           DVN K+  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   +    V+A D  G+ P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAAYSGHLEIVEVLL---KHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA  G+L+IVE+L+  GA +N++DK
Sbjct: 106 VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDK 144

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   +    V+A D  G+ P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAAVSGHLEIVEVLL---KHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 106 VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDK 144

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   ++   VNAVD  G  P+  AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAAFNGHLEIVEVLL---KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 85.9 bits (211), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct: 94  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 115 RTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
           RTALH+A S G  +IVE L+  G  +N KD A W
Sbjct: 41  RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 74

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct: 95  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 137

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 115 RTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
           RTALH+A S G  +IVE L+  G  +N KD A W
Sbjct: 42  RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 75

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 69/101 (68%), Gaps = 3/101 (2%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D +T LH+AA  GH EVV++LLS  + A+  NA D +G  P+H AA  G+  +V++LLS+
Sbjct: 36  DGKTPLHLAAENGHKEVVKLLLS--QGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GAD N K+  G+T LH AA  G  ++V+LL+S+GA  N+ D
Sbjct: 93  GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   ++   VNA D  G  P+H AA  G++ +VE+LL  GAD
Sbjct: 49  TPLHLAAYFGHLEIVEVLL---KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA+ G L+IVE+L+  GA +N++DK
Sbjct: 106 VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDK 144

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 115 RTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
           RTALH+A S G  +IVE L+  G  +N KD A W
Sbjct: 41  RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 74

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 3/95 (3%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           + RT LH+AA  GH EVV++LL   E+   VNA D+ G  P+H AA  G++ +V++LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           GADVN K+  GRT LH AA  G L++V+LL+  GA
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 115 RTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
           RTALH+A S G  +IVE L+  G  +N KD A W
Sbjct: 41  RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 74

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA+DE+G  P+H AA +G++ IVE+LL  GADVN ++
Sbjct: 21  AARAGQDDEVRILMA---NGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           + G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 78  NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDK 111

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +D+  T LH+AA+ G  E+VE+LL   ++   VNA D  G  P+H AA  G++ IVE+LL
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLL---KNGADVNASDSAGITPLHLAAYDGHLEIVEVLL 92
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             GADVN  +  G T LH AA  G L+IVE+L+  GA +N++D
Sbjct: 93  KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 62/94 (65%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           A   G  + V IL++   +   VNA+D+ G  P+H AA  G++ IVE+LL  GADVN ++
Sbjct: 21  ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GRT LH AA+ G L+IVE+L+  GA +N++DK
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           A   G  + V IL++   +   VNA+D+ G  P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GRT LH AA+ G L+IVE+L+  GA +N++DK
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           A   G  + V IL++   +   VNA+D+ G  P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GRT LH AA+ G L+IVE+L+  GA +N++DK
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH+AA  GH    E+LL    S +    VD     P+H AAS G+  IVE+LL  GADVN
Sbjct: 38  LHLAAQYGHFSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHANIVEVLLKHGADVN 94
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
            K+    TALH+A      ++VELLI  GA ++++ K C
Sbjct: 95  AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC 133

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D +G  P+H AA   ++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           + G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK 111

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D  T LH AA  GH E V+ LLS       VNA  ++G  P+H AA  G+  IV++LL+K
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           GADVN ++  G T  H A   G  +IV+LL ++GA +N++
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL +   +   VNA D  G  P+H AA +G++ IVE+LL  GADVN   
Sbjct: 21  AARAGQDDEVRILTA---NGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           + GRT LH AA    L+IVE+L+  GA +N++DK
Sbjct: 78  NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDK 111

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA DE G  P++ A + G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             G T LH AA  G L+I E+L+  GA +N++DK
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + + R+ LH AA  GH ++  +L  V   AN+ +   E+   P+  AA   ++  V+ L
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHML--VQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKACW 148
           +  GA V+ K+  G T LH AA KG  ++V+ L+S G   +N +D   W
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW 112

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D+ G  P+H AA   ++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             G T LH  A  G L+IVE+L+  GA +N++DK
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDK 111

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +  DD+T LH AA  GH  +V++LL  + + N+       G  P+H AA  G+V  V  L
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAAREGHVETVLAL 132
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L K A        G T LH AA  G +++ ELL+ R A  N+  K
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
           DR LL  AA  G  E V+ L +V      VN  D EG    P+H AA    V++VE LL 
Sbjct: 11  DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--KACWLHSIA 153
            GADV+ K+ GG   LH A S G  ++ ELL+  GA +N  D  K   LH  A
Sbjct: 66  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 118

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
           DR LL  AA  G  E V+ L +V      VN  D EG    P+H AA    V++VE LL 
Sbjct: 9   DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--KACWLHSIA 153
            GADV+ K+ GG   LH A S G  ++ ELL+  GA +N  D  K   LH  A
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
           DR LL  AA  G  E V+ L +V      VN  D EG    P+H AA    V++VE LL 
Sbjct: 13  DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--KACWLHSIA 153
            GADV+ K+ GG   LH A S G  ++ ELL+  GA +N  D  K   LH  A
Sbjct: 68  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 120

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           E  NV+N  DEEG+ P+  AA+ G + +VE LL  GAD  L   G  +AL  A SKG+  
Sbjct: 40  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 99
Query: 129 IVELLISRGAKINSKD 144
           IV++L+  G  +N  D
Sbjct: 100 IVKMLLDCGVDVNEYD 115

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           E  NV+N  DEEG+ P+  AA+ G + +VE LL  GAD  L   G  +AL  A SKG+  
Sbjct: 22  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 81
Query: 129 IVELLISRGAKINSKD 144
           IV++L+  G  +N  D
Sbjct: 82  IVKMLLDCGVDVNEYD 97

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           E  NV+N  DEEG+ P+  AA+ G + +VE LL  GAD  L   G  +AL  A SKG+  
Sbjct: 24  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83
Query: 129 IVELLISRGAKINSKD 144
           IV++L+  G  +N  D
Sbjct: 84  IVKMLLDCGVDVNEYD 99

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH A   G   VVE+L+      NV+N  D+    P+H AAS G+  IV+ LL   AD+N
Sbjct: 43  LHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLLQYKADIN 99
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             N+ G   LHYA   G  ++ E L++ GA ++  +K
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK 136

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH A   G   VVE+L+      NV+N  D+    P+H AAS G+  IV+ LL   AD+N
Sbjct: 38  LHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLLQYKADIN 94
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             N+ G   LHYA   G  ++ E L++ GA ++  +K
Sbjct: 95  AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK 131

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N    TLLH+A+  G    VE LL      NV    D  GW P+H A + G++ +VE+LL
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEACNHGHLKVVELLL 63
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
              A VN       + LH AA  G + IV+LL+S GA  N+
Sbjct: 64  QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           RN D    LH+A   GH +VV+ LL   +S    N  D  G  P+  A S G+  +V +L
Sbjct: 115 RNADQAVPLHLACQQGHFQVVKCLL---DSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA +N  N+ G TALH A  +  + +VELL+  GA +   +K
Sbjct: 172 LQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK 216

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 62  EILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
           E L+++    NV  +A D     P+H AA    V IV++LL  GADV+ K+ GG   LH 
Sbjct: 38  EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97
Query: 121 AASKGWLKIVELLISRGAKINSKD 144
           A S G  ++ ELL+  GA +N+ D
Sbjct: 98  ACSYGHYEVTELLLKHGACVNAMD 121

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASIGNVTIVEM 99
           RN D  T LHVA +    E V++LL   E    ++AVD + G +P+  A    ++++V++
Sbjct: 112 RNYDGLTALHVAVNTECQETVQLLL---ERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
           LL  GA+VN +   G +ALH A+ +G L +V  L+  GA  +S  K C
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA--DSSLKNC 214

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH A      ++VE+LL     A+ V    + G  P   AA  G+V ++++ LSKGAD
Sbjct: 41  TPLHNAVQMSREDIVELLLR--HGADPV-LRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G TA   AA  G +K ++ L  RGA +N + K
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH A      ++VE+LL     A+ V    + G  P   AA  G+V ++++ LSKGAD
Sbjct: 61  TPLHNAVQMSREDIVELLLR--HGADPV-LRKKNGATPFILAAIAGSVKLLKLFLSKGAD 117
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G TA   AA  G +K ++ L  RGA +N + K
Sbjct: 118 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 156

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D++G+ P+H AA  G++ IVE+LL  GADVN ++
Sbjct: 9   AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 112 DGGRTALHYAASKGWLKIVELL 133
             G+TA   +   G   + E+L
Sbjct: 66  KFGKTAFDISIDNGNEDLAEIL 87

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKAC 147
           DVN++++ G   LH AA +G L++VE L+       G + +  D AC
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKACWL 149
           DVN++++ G   LH AA +G L++VE L+       G + +  D AC L
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKAC 147
           DVN++++ G   LH AA +G L++VE L+       G + +  D AC
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKAC 147
           DVN++++ G   LH AA +G L++VE L+       G + +  D AC
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           ND+  T LH A   GH E+V+ L+    +   VNA D +GW P+H AAS  NV + + L+
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 102 SKGADV 107
             GA V
Sbjct: 124 ESGAAV 129

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--L 149
           G   +V+ ++ +  D +L ND G TALH A   G  +IV+ L+  G  +N+ D   W  L
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 150 HSIA 153
           H  A
Sbjct: 108 HCAA 111

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 34/135 (25%)
Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI------------HSAASIGNVTI 96
           LH AASCG+ ++ E L+S       V AV+ EG  P+             +  +   V I
Sbjct: 110 LHAAASCGYLDIAEYLIS---QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 97  V------EMLLSKGA----------DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
                  E ++ + A          DV     GG TALH AA+KG+ ++++LLI     +
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGG-TALHVAAAKGYTEVLKLLIQARYDV 225
Query: 141 NSKDKACW--LHSIA 153
           N KD   W  LH+ A
Sbjct: 226 NIKDYDGWTPLHAAA 240

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           ND+  T LH A   GH E+V+ L+    +   VNA D +GW P+H AAS  NV + + L+
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 102 SKGADV 107
             GA V
Sbjct: 124 ESGAAV 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--L 149
           G   +V+ ++ +  D +L ND G TALH A   G  +IV+ L+  G  +N+ D   W  L
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 150 HSIA 153
           H  A
Sbjct: 108 HCAA 111

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHS 151
           G++  V+  ++KG DVN   +GGR  LHYAA  G L+I+E L+ +GA IN+ DK    H 
Sbjct: 13  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK----HH 68
Query: 152 IAP 154
           I P
Sbjct: 69  ITP 71

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHS 151
           G++  V+  ++KG DVN   +GGR  LHYAA  G L+I+E L+ +GA IN+ DK    H 
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK----HH 73
Query: 152 IAP 154
           I P
Sbjct: 74  ITP 76

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N+  +T LH+A     PE+ E LL       +    D  G  P+H A   G +  V +L
Sbjct: 38  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 94
Query: 101 LSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
                  +L       N  G T LH A+  G+L IVELL+S GA +N+++  
Sbjct: 95  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC 146

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N+  +T LH+A     PE+ E LL       +    D  G  P+H A   G +  V +L
Sbjct: 41  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 97
Query: 101 LSKGADVNL------KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
                  +L       N  G T LH A+  G+L IVELL+S GA +N+++  
Sbjct: 98  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC 149

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGNAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKACWL 149
           DVN++++ G   LH AA +G L++VE L+       G + +  D AC L
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           AA  G    V +L++ GADV  K+  G T LH AA  G L++V+LL+  GA +N++DK
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
           D + T LH A   GH  +V  L+      +++   D EG + IH AA  G+ +IV  L++
Sbjct: 74  DLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 103 KGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDK 145
           KG DV++ +  G T L +AA +   +    LL++    +N  DK
Sbjct: 131 KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 72  NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           N+VN  DE G+ P+  A++ G +  V  LL  GAD ++      +AL  A++ G+  IV 
Sbjct: 27  NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKD 144
           LL+ R   IN  D
Sbjct: 87  LLLERDVDINIYD 99

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 72  NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           N+VN  DE G+ P+  A++ G +  V  LL  GAD ++      +AL  A++ G+  IV 
Sbjct: 27  NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKD 144
           LL+ R   IN  D
Sbjct: 87  LLLERDVDINIYD 99

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT LH A +     V +ILL     A  +NA   +G  P+  AA +    +VE L++  A
Sbjct: 85  RTPLHAAVAADAMGVFQILLR--NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA 142
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           D+N  ++ G+TALH+AA+    + V +L+   A  +++D
Sbjct: 143 DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD 181

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVEL 132
           VN +D+ G   ++ A   G+  IVE L ++   ++N +N  G TALH AA KG+  IV+L
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 133 LISRGAKINSKD 144
           L+++GA+ + ++
Sbjct: 159 LLAKGARTDLRN 170

>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range Protein K1 Reveal A Novel Ankyrin Repeat Interaction Surface For K1s Function Length = 285

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
           E   P+H AA++ +  IV++LL  G D +  +D G TAL+YA   G  + V+L + +  +
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWR 120
Query: 140 INSKDKACW 148
           +    K  W
Sbjct: 121 LXFYGKTGW 129

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           AA  G    V +L++ GADV  K+  G T LH AA  G L++V+LL+  GA + ++DK
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R+  +RT L VA   G    ++ L+   E+ + +   D EG   +  A     + I E L
Sbjct: 31  RDSYNRTPLMVACMLGMENAIDKLV---ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           LSKG++VN K+  G+T L ++   G+ ++   L+  GA +N ++
Sbjct: 88  LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRN 131

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 48  LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
           LL  A      +V EIL    ++   V+ VD EG  P++ A    ++ I + L+ +GAD+
Sbjct: 9   LLEAANQRDTKKVKEIL---QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLI 134
           NL+N    +   YA ++G  +I+  ++
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEILAYML 92

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 48  LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
           LL  AA  G  EVV+  +   +  N  +  +EEG   +H+A    N +IV+ L++ GA+V
Sbjct: 24  LLLDAALTGELEVVQQAV---KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           N  +  G T LH AAS     I   L+  GA I
Sbjct: 81  NSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 80  EGWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           +G   +H AA + N  IV+ L+  KG++ + +++ G+T +  AA +G +++V  LI +GA
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 139 KINSKD 144
            + + D
Sbjct: 338 SVEAVD 343

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 56  GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
           GHP  +  +         VN V+  ++   P+  A +  ++   E LL  GA+VN  +  
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GR  LH+A   G   +  L + RGA + ++D
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARD 298

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           N  D  G +P+H AA  G +  +++L+  GADVN+ +  G   +H A  +G   +V  L
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           N  D  G +P+H AA  G +  +++L+  GADVN+ +  G   +H A  +G   +V  L
Sbjct: 68  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 126

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 56  GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
           GHP  +  +         VN V+  ++   P+  A +  ++   E LL  GA+VN  +  
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GR  LH+A   G   +  L + RGA + ++D
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARD 298

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 56  GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
           GHP  +  +         VN V+  ++   P+  A +  ++   E LL  GA+VN  +  
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GR  LH+A   G   +  L + RGA + ++D
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARD 298

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVEL 132
           V+AVDE G   +   A +G+   V +L   GAD++ ++  GG TALH AA     ++VE 
Sbjct: 69  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 133 LISRGAKINSKDK 145
           L+  GA I  +D+
Sbjct: 129 LVELGADIEVEDE 141

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVEL 132
           V+AVDE G   +   A +G+   V +L   GAD++ ++  GG TALH AA     ++VE 
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 133 LISRGAKINSKDK 145
           L+  GA I  +D+
Sbjct: 130 LVELGADIEVEDE 142

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           G P V   LL    S NV +A    G +P+H AA  G +  +++L+  GADVN  +  G 
Sbjct: 54  GSPAVALELLKQGASPNVQDA---SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGS 110
Query: 116 TALHYAASKGWLKIVELL 133
             +H A  +G   +V  L
Sbjct: 111 LPIHLAIREGHSSVVSFL 128

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +D  T LH+A    H   ++ LL        ++  ++ G   +H AA +G  + VE L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 102 SKGADVNLKNDGGRTALHYA 121
           + GA V +   GG TALH A
Sbjct: 66  AAGAGVLVAERGGHTALHLA 85

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +D  T LH+A    H   ++ LL        ++  ++ G   +H AA +G  + VE L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 102 SKGADVNLKNDGGRTALHYA 121
           + GA V +   GG TALH A
Sbjct: 66  AAGAGVLVAERGGHTALHLA 85

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           G P V   LL    S NV +A    G +P+H AA  G +  +++L+  GADVN  +  G 
Sbjct: 52  GSPAVALELLKQGASPNVQDA---SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGS 108
Query: 116 TALHYAASKGWLKIVELL 133
             +H A  +G   +V  L
Sbjct: 109 LPIHLAIREGHSSVVSFL 126

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 82  WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           W+P+H AA  G+   +  L+S+G  VN+      + LH A   G L  V++L+  GA++N
Sbjct: 4   WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 61  VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
           +E +L +    N+     + G   +  A S G V +V+ LL+  ADVN+++D G TAL  
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMC 222
Query: 121 AASKGWLKIVELLIS 135
           A   G  +I  LL++
Sbjct: 223 ACEHGHKEIAGLLLA 237

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE--EGWAPIHSAASIGNVTIVE 98
           R     T LH+AA   + E   +L+             E  EG   +H A    NV +V 
Sbjct: 33  RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Query: 99  MLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLISRGAKINSKD 144
            LL++GA V+ +  G             G   L +AA  G  +IV LLI  GA I ++D
Sbjct: 93  ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQD 151

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 82  WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           W+P+H AA  G+   +  L+S+G  VN+      + LH A   G L  V++L+  GA++N
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           + A++ N  D  G   +H AA+       + LL   AD N++++ GRT LH A S     
Sbjct: 45  QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 129 IVELLISRGA 138
           + ++LI   A
Sbjct: 105 VFQILIRNRA 114

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-42
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-40
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-40
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-42
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-42
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-40
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-33
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-41
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-41
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-39
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-41
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-39
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-33
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-41
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-35
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-41
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-39
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-33
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-41
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-37
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-40
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-40
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-39
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-26
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-40
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-35
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-40
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-39
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-37
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-28
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-40
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-40
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-38
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-34
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-40
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-39
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-36
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-36
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-33
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-39
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-32
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-28
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-39
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-34
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-27
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-39
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-39
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-31
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-29
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-39
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-37
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-35
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-34
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-34
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-38
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-38
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-37
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-28
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-38
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-35
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-35
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-32
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-38
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-32
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-38
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-36
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-35
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-38
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-37
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-36
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-37
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-37
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-32
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-29
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-37
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-33
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-28
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-37
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-35
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-31
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-37
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-32
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-36
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-29
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-26
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-36
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-35
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-29
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-17
2rfa_A	232	Transient receptor potential cation channel subfa	1e-35
2rfa_A	232	Transient receptor potential cation channel subfa	8e-33
2rfa_A	232	Transient receptor potential cation channel subfa	2e-32
2rfa_A	232	Transient receptor potential cation channel subfa	6e-31
2rfa_A	232	Transient receptor potential cation channel subfa	4e-14
2rfa_A	232	Transient receptor potential cation channel subfa	8e-08
2rfa_A	232	Transient receptor potential cation channel subfa	6e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-35
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-26
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-34
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-34
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-31
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-27
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-30
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-05
2etb_A	256	Transient receptor potential cation channel subfam	2e-29
2etb_A	256	Transient receptor potential cation channel subfam	2e-27
2etb_A	256	Transient receptor potential cation channel subfam	7e-21
2etb_A	256	Transient receptor potential cation channel subfam	1e-12
2etb_A	256	Transient receptor potential cation channel subfam	2e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-28
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-21
2pnn_A	273	Transient receptor potential cation channel subfa	2e-27
2pnn_A	273	Transient receptor potential cation channel subfa	7e-24
2pnn_A	273	Transient receptor potential cation channel subfa	5e-23
2pnn_A	273	Transient receptor potential cation channel subfa	1e-20
2pnn_A	273	Transient receptor potential cation channel subfa	3e-16
2pnn_A	273	Transient receptor potential cation channel subfa	2e-11
2pnn_A	273	Transient receptor potential cation channel subfa	7e-06
2pnn_A	273	Transient receptor potential cation channel subfa	7e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-19
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-16
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-15
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-08

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  137 bits (348), Expect = 3e-42
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
           D   +H  A+ G  + ++  L      N+VN  DE G+ P+  A++ G +  V  LL  G
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKG--DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           AD ++      +AL  A++ G+  IV LL+ R   IN  D      L 
Sbjct: 60  ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLL 107

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  133 bits (337), Expect = 1e-40
 Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              +  + L +A++ G+ ++V +LL  D   ++ N  D  G  P+  A    +V  VE L
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERD--VDI-NIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L++GAD+  + D G T +  A + G+ K+ +++ +   K+   + 
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNL 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  132 bits (336), Expect = 2e-40
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            ++   T L  A++ G  E V  LL     A+  + + +E  + +  A++ G   IV +L
Sbjct: 32  PDERGFTPLIWASAFGEIETVRFLLEWG--ADP-HILAKERESALSLASTGGYTDIVGLL 88

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L +  D+N+ +  G T L YA     +K VE L++RGA + ++  
Sbjct: 89  LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD 133

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 85.9 bits (214), Expect = 4e-22
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + +  T L  A    H + VE LL+    A++     + G+ P+  A ++G   + +++
Sbjct: 98  YDWNGGTPLLYAVRGNHVKCVEALLARG--ADL-TTEADSGYTPMDLAVALGYRKVQQVI 154

Query: 101 LSKGADVNLKNDGGRT 116
            +    +   N     
Sbjct: 155 ENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 53.6 bits (130), Expect = 7e-10
 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 113 GGRTALHYAASKGWLKIVELLISRGA-KINSKDKACW--LH 150
           G   ++H  A++G L  ++  + +G   +N  D+  +  L 
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLI 41

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  135 bits (342), Expect = 4e-42
 Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 5/111 (4%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D  T LH AA  GH E V+ LLS    A+V NA  ++G  P+H AA  G+  IV++LL
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKG--ADV-NARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           +KGADVN ++  G T  H A   G  +IV+LL ++GA +N++        H
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 97.8 bits (245), Expect = 2e-27
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R+ D  T LH+AA  GH E+V++LL+    A+V NA  ++G  P H A   G+  IV++L
Sbjct: 38  RSKDGNTPLHLAAKNGHAEIVKLLLAKG--ADV-NARSKDGNTPEHLAKKNGHHEIVKLL 94

Query: 101 LSKGADVNLKNDGGRTALHY 120
            +KGADVN ++ G     H+
Sbjct: 95  DAKGADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 60.9 bits (149), Expect = 4e-13
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           G      +  G T LH AA  G  + V+ L+S+GA +N++ K
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK 40

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  135 bits (344), Expect = 8e-42
 Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N +    L  AA  G  E V+ L +V +S N    ++     P+H AA    V++VE LL
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTV-QSVNC-RDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GADV+ K+ GG   LH A S G  ++ ELL+  GA +N  D 
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL 106

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  132 bits (336), Expect = 2e-40
 Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 5/118 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LH AA      VVE LL     A+V +A D+ G  P+H+A S G+  + E+L
Sbjct: 38  IEGRQSTPLHFAAGYNRVSVVEYLLQHG--ADV-HAKDKGGLVPLHNACSYGHYEVAELL 94

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LHSIAPGS 156
           +  GA VN+ +    T LH AA+KG  +I +LL+  GA    K++     L  +  G 
Sbjct: 95  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGD 152

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  113 bits (285), Expect = 7e-33
 Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++      LH A S GH EV E+L+     A V N  D   + P+H AA+ G   I ++L
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHG--AVV-NVADLWKFTPLHEAAAKGKYEICKLL 127

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           L  GAD   KN  G T L      G   I +LL    A
Sbjct: 128 LQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 92.1 bits (230), Expect = 1e-24
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
            + E    +  AA  G+V  V+ L +    +         T LH+AA    + +VE L+ 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 136 RGAKINSKDK 145
            GA +++KDK
Sbjct: 64  HGADVHAKDK 73

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 54.7 bits (133), Expect = 3e-10
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 6/50 (12%)

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKACW--LH 150
           GA  N +       L  AA  G ++ V+ L +         +      LH
Sbjct: 1   GAMGNSE---ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH 47

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  136 bits (344), Expect = 1e-41
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + +    +      G+   V + L    + N +N  D+ G++P+H A   G   +VEML+
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLD--NTENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            +GA +N+ N G  T LH AAS G   IV+ L+   A IN+ ++
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE 103

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  134 bits (341), Expect = 4e-41
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D   + LH A   G   VVE+L+     A + N ++     P+H AAS G+  IV+ L
Sbjct: 35  GDDHGFSPLHWACREGRSAVVEMLIMRG--ARI-NVMNRGDDTPLHLAASHGHRDIVQKL 91

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L   AD+N  N+ G   LHYA   G  ++ E L++ GA ++  +K
Sbjct: 92  LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK 136

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  129 bits (328), Expect = 3e-39
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N  D T LH+AAS GH ++V+ LL     A++ NAV+E G  P+H A   G   + E L
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYK--ADI-NAVNEHGNVPLHYACFWGQDQVAEDL 124

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           ++ GA V++ N  G   +  A +     + E     G  +N   
Sbjct: 125 VANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  134 bits (341), Expect = 2e-41
 Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 5/111 (4%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +    + LH+AA  GH    E+LL      +  +A  +    P+H AAS G+  IVE+LL
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAG--VSR-DARTKVDRTPLHMAASEGHANIVEVLL 87

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
             GADVN K+    TALH+A      ++VELLI  GA ++++ K C     
Sbjct: 88  KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD 138

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  128 bits (324), Expect = 7e-39
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D    L  AA  G  + V IL++    A      D  G +P+H AA  G+ +  E+LL  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANG--APF--TTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           G   + +    RT LH AAS+G   IVE+L+  GA +N+KD 
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM 98

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  112 bits (284), Expect = 6e-33
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R   DRT LH+AAS GH  +VE+LL     A+V NA D      +H A    +  +VE+L
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHG--ADV-NAKDMLKMTALHWATEHNHQEVVELL 119

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +  GADV+ ++   +TA   +   G   + E+L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 90.5 bits (226), Expect = 4e-24
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
           +    +  AA  G    V +L++ GA     +  G + LH AA  G     E+L+  G  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 140 INSKDKACW--LH 150
            +++ K     LH
Sbjct: 60  RDARTKVDRTPLH 72

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  134 bits (339), Expect = 2e-41
 Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N    TLLH+A+  G    VE LL     ++  N  D  GW P+H A + G++ +VE+L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNG--SDP-NVKDHAGWTPLHEACNHGHLKVVELL 62

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L   A VN       + LH AA  G + IV+LL+S GA  N+ + 
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  119 bits (300), Expect = 2e-35
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++    T LH A + GH +VVE+LL     A V N    +  +P+H AA  G+V IV++L
Sbjct: 39  KDHAGWTPLHEACNHGHLKVVELLLQHK--ALV-NTTGYQNDSPLHDAAKNGHVDIVKLL 95

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
           LS GA  N  N  G   + Y   +    ++ L     +   S
Sbjct: 96  LSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 67.1 bits (165), Expect = 3e-15
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           G D    +  G T LH A+ KG +  VE L+  G+  N KD A W  LH
Sbjct: 1   GIDPFTNHR-GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLH 48

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  133 bits (338), Expect = 9e-41
 Identities = 50/112 (44%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA  GH E+VE+LL     A+V NAVD  G  P+  AA  G++ IVE+L
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNG--ADV-NAVDHAGMTPLRLAALFGHLEIVEVL 99

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           L  GADVN  +  G T LH AA  G L+IVE+L+  GA +N++DK       
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFD 151

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  130 bits (329), Expect = 2e-39
 Identities = 45/104 (43%), Positives = 59/104 (56%), Gaps = 3/104 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             D    L  AA  G  + V IL++    A+V NA D  GW P+H AA  G++ IVE+LL
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANG--ADV-NAEDASGWTPLHLAAFNGHLEIVEVLL 67

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GADVN  +  G T L  AA  G L+IVE+L+  GA +N+ D 
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM 111

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  115 bits (291), Expect = 1e-33
 Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T L +AA  GH E+VE+LL     A+V NA D EG  P+H AA  G++ IVE+L
Sbjct: 76  VDHAGMTPLRLAALFGHLEIVEVLLKNG--ADV-NANDMEGHTPLHLAAMFGHLEIVEVL 132

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
           L  GADVN ++  G+TA   +   G   + E+L  
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  100 bits (253), Expect = 5e-28
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
           ++  +    +    +  AA  G    V +L++ GADVN ++  G T LH AA  G L+IV
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIV 63

Query: 131 ELLISRGAKINSKDK 145
           E+L+  GA +N+ D 
Sbjct: 64  EVLLKNGADVNAVDH 78

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 66.2 bits (163), Expect = 1e-14
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + +  T LH+AA  GH E+VE+LL     A+V NA D+ G      +   GN  + E+L
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEVLLKNG--ADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165

Query: 101 LSK 103
              
Sbjct: 166 QKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 5/28 (17%), Positives = 15/28 (53%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVD 68
           ++   +T   ++   G+ ++ EIL  ++
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQKLN 169

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  132 bits (334), Expect = 9e-41
 Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 5/109 (4%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           + RT LH+AA  GH EVV++LL     A+V NA D+ G  P+H AA  G++ +V++LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAG--ADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           GADVN K+  GRT LH AA  G L++V+LL+  GA +N+KDK     LH
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 106

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  122 bits (308), Expect = 7e-37
 Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 3/98 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ + RT LH+AA  GH EVV++LL     A+V NA D+ G  P+H AA  G++ +V++L
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAG--ADV-NAKDKNGRTPLHLAARNGHLEVVKLL 87

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           L  GADVN K+  GRT LH AA  G L++V+LL+  GA
Sbjct: 88  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  132 bits (336), Expect = 1e-40
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +++  T L  AA+ G   VVE LL     A+    + +   + +  A S G   IV+ML
Sbjct: 32  TDEEGFTPLMWAAAHGQIAVVEFLLQNG--ADP-QLLGKGRESALSLACSKGYTDIVKML 88

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           L  G DVN  +  G T L YA     +K V++L+  GA    +  + +  + 
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMD 140

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  131 bits (332), Expect = 6e-40
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 + L +A S G+ ++V++LL      +V N  D  G  P+  A    +V  V+ML
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCG--VDV-NEYDWNGGTPLLYAVHGNHVKCVKML 121

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GAD  ++ D G  ++  A + G+  + +++ S   K+    K
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  129 bits (328), Expect = 3e-39
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
              +H  A+ G    +   +  +    + N  DEEG+ P+  AA+ G + +VE LL  GA
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQE--NVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           D  L   G  +AL  A SKG+  IV++L+  G  +N  D 
Sbjct: 61  DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDW 100

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 96.7 bits (242), Expect = 2e-26
 Identities = 16/65 (24%), Positives = 30/65 (46%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
               +H  A+ G +  +   + +   +N  ++ G T L +AA+ G + +VE L+  GA  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 141 NSKDK 145
               K
Sbjct: 63  QLLGK 67

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 56.2 bits (137), Expect = 6e-11
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
               ++H  A++G +  +   I +   IN  D+  +  L 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLM 41

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  132 bits (335), Expect = 3e-40
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             +  T    AA     + +  LL   E  +V +AVDE G   +   A +G+   V +L 
Sbjct: 41  VSEYETPWWTAARKADEQALSQLL---EDRDV-DAVDENGRTALLFVAGLGSDKCVRLLA 96

Query: 102 SKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GAD++ ++  GG TALH AA     ++VE L+  GA I  +D+
Sbjct: 97  EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 141

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  121 bits (305), Expect = 1e-35
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEM 99
            +++ RT L   A  G  + V +L      A++ +  D   G   +H AA      +VE 
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAEAG--ADL-DHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           L+  GAD+ ++++ G TAL  A            +  G +I  + 
Sbjct: 129 LVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  115 bits (290), Expect = 2e-33
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             +      +    GH         +   A+V      E   P  +AA   +   +  LL
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIA--ADV----VSEYETPWWTAARKADEQALSQLL 64

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            +  DV+  ++ GRTAL + A  G  K V LL   GA ++ +D 
Sbjct: 65  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 107

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 81.8 bits (203), Expect = 2e-20
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 6/83 (7%)

Query: 70  SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
           +  + +    EG          G+           ADV  +     T    AA K   + 
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQA 59

Query: 130 VELLISRGAKINSKDKACW--LH 150
           +  L+     +++ D+     L 
Sbjct: 60  LSQLLE-DRDVDAVDENGRTALL 81

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 54.0 bits (131), Expect = 6e-10
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 19/78 (24%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT------ 95
                T LH+AA    PEVVE L+ +   A++    DE G   +  A  I   T      
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELG--ADI-EVEDERGLTALELAREILKTTPKGNPM 163

Query: 96  ----------IVEMLLSK 103
                     ++ +L  +
Sbjct: 164 QFGRRIGLEKVINVLEGQ 181

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  133 bits (337), Expect = 6e-40
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 5/112 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++D   T +  A    H ++V++LLS    +++ N  D E    +H AA  G V I E+L
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLLSKG--SDI-NIRDNEENICLHWAAFSGCVDIAEIL 163

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           L+   D++  N  G + LH AA +     V L +SR + +  K+K     L 
Sbjct: 164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQ 215

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  132 bits (336), Expect = 1e-39
 Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 4/112 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ +  T LH+AA  GH EVV+ LLS       VN  D+ GW P+  A    +V +V++L
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLSNG--QMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           LSKG+D+N++++     LH+AA  G + I E+L++    +++ +      LH
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  125 bits (317), Expect = 7e-37
 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + + R+ LH AA  GH ++  +L+     AN+ +   E+   P+  AA   ++  V+ L
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAG--ANI-DTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDK 145
           +  GA V+ K+  G T LH AA KG  ++V+ L+S G   +N +D 
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  119 bits (300), Expect = 2e-34
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R++++   LH AA  G  ++ EILL+     ++ +AV+  G +P+H AA       V + 
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLAAK--CDL-HAVNIHGDSPLHIAARENRYDCVVLF 196

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           LS+ +DV LKN  G T L  A+    +     +     
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  102 bits (256), Expect = 8e-28
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 72  NV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
           ++      +   +P+H+AA  G+V I  ML+  GA+++  ++  RT L  AA    L+ V
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 131 ELLISRGAKINSKDK 145
           + LI  GA ++ KD 
Sbjct: 61  KYLIKAGALVDPKDA 75

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.1 bits (173), Expect = 1e-15
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N    + LH+AA     + V + LS D  ++V    ++EG  P+  A+    V     +
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRD--SDV-TLKNKEGETPLQCASLNSQVWSALQM 229

Query: 101 LSKGAD 106
                D
Sbjct: 230 SKALQD 235

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  132 bits (334), Expect = 7e-40
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ +  T L  A       + E LLS    +NV N  D  G  P+  +   G   +   L
Sbjct: 64  KDIEGSTALIWAVKNNRLGIAEKLLSKG--SNV-NTKDFSGKTPLMWSIIFGYSEMSYFL 120

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA+VN +N  G T L  A+  G  +IV+ L+  GA I+++D 
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  115 bits (291), Expect = 2e-33
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++   +T L  +   G+ E+   LL     ANV N  + EG  P+  A+  G   IV+ L
Sbjct: 97  KDFSGKTPLMWSIIFGYSEMSYFLLEHG--ANV-NDRNLEGETPLIVASKYGRSEIVKKL 153

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
           L  GAD++ ++  G TA   A   G  +++++   
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  115 bits (290), Expect = 2e-33
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + +   +  +       + ++ L          N  D     P+  A  +G    ++ L+
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFL---------RNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
                +  K+  G TAL +A     L I E L+S+G+ +N+KD +    L 
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 6/65 (9%), Positives = 13/65 (20%), Gaps = 27/65 (41%)

Query: 108 NLKNDGGRTALHYAASKGWLK---------------------------IVELLISRGAKI 140
           +  +  G         K   +                            ++ L+    K+
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL 61

Query: 141 NSKDK 145
             KD 
Sbjct: 62  EDKDI 66

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  130 bits (331), Expect = 7e-40
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +     L  AA+ G  E +  LL  +   N VNA +  G   +     +GN  I   LL
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNN--VN-VNAQNGFGRTALQ-VMKLGNPEIARRLL 57

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            +GA+ +LK+  G   +H AA  G+L  ++ L+   A +N +D 
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  126 bits (319), Expect = 4e-38
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 7/113 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N   RT L      G+PE+   LL     AN  +  D  G+A IH AA  G +  ++ L
Sbjct: 34  QNGFGRTALQ-VMKLGNPEIARRLLLRG--ANP-DLKDRTGFAVIHDAARAGFLDTLQTL 89

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKACW--LH 150
           L   ADVN++++ G   LH AA +G L++VE L+   A  +  ++        
Sbjct: 90  LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  117 bits (296), Expect = 2e-34
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++     ++H AA  G  + ++ LL     A+V N  D EG  P+H AA  G++ +VE L
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQ--ADV-NIEDNEGNLPLHLAAKEGHLRVVEFL 122

Query: 101 LSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           +   A +V  +N  G TA   A   G  ++V L+ + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 92.1 bits (230), Expect = 1e-24
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
           + E     + SAA+ G++  +  LL    +VN +N  GRTAL      G  +I   L+ R
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR 59

Query: 137 GAKINSKDKACW--LH 150
           GA  + KD+  +  +H
Sbjct: 60  GANPDLKDRTGFAVIH 75

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  132 bits (336), Expect = 7e-40
 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +++  RT LH A S     V +IL+     A  ++A   +G  P+  AA +    ++E L
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNR--ATDLDARMHDGTTPLILAARLAVEGMLEDL 111

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           ++  ADVN  +D G++ALH+AA+   +    +L+  GA  + ++ 
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 156

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  131 bits (333), Expect = 2e-39
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  D  T L +AA      ++E L++    A+V NAVD+ G + +H AA++ NV    +L
Sbjct: 88  RMHDGTTPLILAARLAVEGMLEDLINSH--ADV-NAVDDLGKSALHWAAAVNNVDAAVVL 144

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA+ +++N+   T L  AA +G  +  ++L+   A  +  D 
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 189

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  123 bits (312), Expect = 3e-36
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA     +  + LL     A+  N  D  G  P+H+A S     + ++L
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEAS--AD-ANIQDNMGRTPLHAAVSADAQGVFQIL 77

Query: 101 LSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           +   A D++ +   G T L  AA      ++E LI+  A +N+ D      LH
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 130

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  122 bits (310), Expect = 5e-36
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D  ++ LH AA+  + +   +LL     AN  +  +     P+  AA  G+    ++L
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNG--ANK-DMQNNREETPLFLAAREGSYETAKVL 177

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           L   A+ ++ +   R     A  +    IV LL       + + 
Sbjct: 178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  115 bits (291), Expect = 4e-33
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
             P V+   +     A++ N  D  G   +H AA        + LL   AD N++++ GR
Sbjct: 2   DAPAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR 59

Query: 116 TALHYAASKGWLKIVELLISRGAK-INSKDKACW--LH 150
           T LH A S     + ++LI   A  ++++       L 
Sbjct: 60  TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 97

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  129 bits (326), Expect = 1e-39
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
                     A   G  + V+  ++     +V N   E G  P+H AA  G + I+E LL
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKG--EDV-NRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            KGAD+N  +    T L  A  +G +  V+LL+S+GA    K  
Sbjct: 61  LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP 104

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  109 bits (275), Expect = 7e-32
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
             +  R  LH AA CG  E++E LL     A++ NA D+    P+ SA   G+V+ V++L
Sbjct: 36  TLEGGRKPLHYAADCGQLEILEFLLLKG--ADI-NAPDKHHITPLLSAVYEGHVSCVKLL 92

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           LSKGAD  +K   G TA     ++    +++
Sbjct: 93  LSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 99.8 bits (250), Expect = 4e-28
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 76  AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
            +          A   G++  V+  ++KG DVN   +GGR  LHYAA  G L+I+E L+ 
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 136 RGAKINSKDKACW--LHS 151
           +GA IN+ DK     L S
Sbjct: 62  KGADINAPDKHHITPLLS 79

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  129 bits (326), Expect = 2e-39
 Identities = 44/102 (43%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D    L  AA  G  + V IL++    A+V NA DE G  P++ A + G++ IVE+LL  
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANG--ADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           GADVN  +  G T LH AA  G L+I E+L+  GA +N++DK
Sbjct: 70  GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  116 bits (293), Expect = 2e-34
 Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +++   T L++A + GH E+VE+LL     A+V NAVD  G+ P+H AA IG++ I E+L
Sbjct: 43  KDEYGLTPLYLATAHGHLEIVEVLLKNG--ADV-NAVDAIGFTPLHLAAFIGHLEIAEVL 99

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
           L  GADVN ++  G+TA   +   G   + E+L  
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 96.7 bits (242), Expect = 9e-27
 Identities = 25/75 (33%), Positives = 42/75 (56%)

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
           ++  +    +    +  AA  G    V +L++ GADVN K++ G T L+ A + G L+IV
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV 63

Query: 131 ELLISRGAKINSKDK 145
           E+L+  GA +N+ D 
Sbjct: 64  EVLLKNGADVNAVDA 78

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  132 bits (334), Expect = 3e-39
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  D  T L +AA      ++E L++    A+V NAVD+ G + +H AA++ NV    +L
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSH--ADV-NAVDDLGKSALHWAAAVNNVDAAVVL 176

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           L  GA+ +++N+   T L  AA +G  +  ++L+   A  +  D        
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 228

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  122 bits (310), Expect = 1e-35
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D  ++ LH AA+  + +   +LL     AN  +  +     P+  AA  G+    ++L
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNG--ANK-DMQNNREETPLFLAAREGSYETAKVL 209

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           L   A+ ++ +   R     A  +    IV LL       +  
Sbjct: 210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  121 bits (307), Expect = 3e-35
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 16/119 (13%)

Query: 41  RNDDDRTLLHVAASCG-------------HPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           R  D  T L +A+  G              P V+   +     A++ N  D  G   +H 
Sbjct: 6   RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG--ASLHNQTDRTGETALHL 63

Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDK 145
           AA        + LL   AD N++++ GRT LH A S     + ++LI   A  ++++  
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 88.7 bits (221), Expect = 1e-22
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 16/93 (17%)

Query: 74  VNAVDEEGWAPIHSAASIGNVT-------------IVEMLLSKGADV-NLKNDGGRTALH 119
           VN    +G+ P+  A+  G                ++   + +GA + N  +  G TALH
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 120 YAASKGWLKIVELLISRGAKINSKDKACW--LH 150
            AA        + L+   A  N +D      LH
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTPLH 95

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.9 bits (180), Expect = 1e-16
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N+ + T L +AA  G  E  ++LL     AN  +  D     P   A    +  IV +L
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHF--ANR-DITDHMDRLPRDIAQERMHHDIVRLL 242

Query: 101 LSKGADVNLKN 111
             +    +  +
Sbjct: 243 DLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 14/54 (25%)

Query: 106 DVNLKNDGGRTALHYAASKGW-------------LKIVELLISRGAKI-NSKDK 145
           DVN++   G T L  A+  G                ++   I +GA + N  D+
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR 55

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  130 bits (329), Expect = 9e-39
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D   T  H+A S G+ EVV+ L       ++ N +  +G   +H A       + + L
Sbjct: 68  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFL 126

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKACW--LH 150
           +  GA V +K+   +  LH AAS G LK++ELL   G + +N +DK  W  L 
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  124 bits (313), Expect = 3e-36
 Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 11/152 (7%)

Query: 7   QTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVE 62
               D         A   G+    KSL  + L   L+   +   T LH+A      EV +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

Query: 63  ILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYA 121
            L+     A+V    D+    P+H AAS+G++ ++E+L   G + VN ++  G T L +A
Sbjct: 125 FLIENG--ASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181

Query: 122 ASKGWLKIVELLISR-GAKINSKDKACW--LH 150
            ++G      LL+ + GA+ +  D        
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED 213

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  111 bits (279), Expect = 3e-31
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 46  RTLLHVAASCGH-PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
              LH A       +V E+L S    +  +   D++G  P+H + S     I   LLSK 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKP--SL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 105 ADVNLKN---DGGRTALHYAASKGWLKIVELLISR--GAKINSKDK 145
            +VNL +   D G T  H A S G L++V+ L  R     +N    
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN 105

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  106 bits (268), Expect = 1e-29
 Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++  ++  LH AAS G  +++E+L  +    + VN  D++GW P+  A + G+     +L
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLG--KSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193

Query: 101 LSK-GADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
           + K GA+ +L ++ G  A   A ++   ++ +  ++
Sbjct: 194 VEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 86.7 bits (216), Expect = 7e-22
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 81  GWAPIHSAASIGNV-TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
              P+H A        + E+L SK + +  K+  GR  LH++ S    +I   L+S+   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 140 INSKDK 145
           +N  D 
Sbjct: 62  VNLDDY 67

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  131 bits (332), Expect = 1e-38
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 4/105 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEML 100
             +D  LL  A      ++V+ LL     ANV N  +EE GW P+H+A  +    IVE+L
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGG--ANV-NFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GAD  L+   G T    AA  G +K+++L +S+GA +N  D 
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF 103

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  131 bits (331), Expect = 2e-38
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +   T LH A      ++VE+LL     A+      + G  P   AA  G+V ++++ L
Sbjct: 36  EEGGWTPLHNAVQMSREDIVELLLRHG--ADP-VLRKKNGATPFLLAAIAGSVKLLKLFL 92

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           SKGADVN  +  G TA   AA  G +K ++ L  RGA +N + K
Sbjct: 93  SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  122 bits (309), Expect = 4e-35
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 41  RNDDDRTLLHVAASCGH----PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTI 96
            ++  R  L  A           +  +LL     A+V N   E G  P+  A    ++ +
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHG--ADV-NVRGERGKTPLILAVEKKHLGL 234

Query: 97  VEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           V+ LL +   ++N  +  G+TAL  A      KI ELL  RGA  +  D
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  120 bits (304), Expect = 2e-34
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 16/123 (13%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  +  T   +AA  G  +++++ LS    A+V N  D  G+     AA  G V  ++ L
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKG--ADV-NECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 101 LSKGADVNLKN----------DGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACW- 148
             +GA+VNL+            GG TAL  AA KG ++++++L+   GA +N+ D     
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 149 -LH 150
            L 
Sbjct: 185 ALI 187

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  119 bits (302), Expect = 3e-34
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 21/159 (13%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSL--------SKQQLLKSLSLRNDDDRTLLHV 51
           D++    D        +AA  G     K L         +++  +          T L  
Sbjct: 97  DVN--ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT----IVEMLLSKGADV 107
           AA  GH EV++ILL  +  A+V NA D  G   +  A    + +    I  +LL  GADV
Sbjct: 155 AAEKGHVEVLKILLD-EMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212

Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDK 145
           N++ + G+T L  A  K  L +V+ L+ +   +IN  D 
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  129 bits (328), Expect = 2e-38
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 12/151 (7%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSKQ--QLLKSLSLRNDDDRTLLHVAASCGHPEVVE 62
             D+        A E    +  ++L          L  RN D  T LHVA +    E V+
Sbjct: 74  ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133

Query: 63  ILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           +LL     A++ +AVD + G +P+  A    ++++V++LL  GA+VN +   G +ALH A
Sbjct: 134 LLLERG--ADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190

Query: 122 ASKGWLKIVELLISRGAKINSKDKACW--LH 150
           + +G L +V  L+  GA  + K+      L 
Sbjct: 191 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  124 bits (315), Expect = 1e-36
 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 9/121 (7%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDES--ANVVNAVDEEGWAPIHSAASIGNVT 95
            +  ++D  T LH+A   G+   V  L+++ +     + +  +     P+H A      +
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPS 60

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK----INSKDKACW--L 149
           +V +L++ GA     +  G+TA H A        +  L+   A     + +++      L
Sbjct: 61  VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

Query: 150 H 150
           H
Sbjct: 121 H 121

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  120 bits (304), Expect = 6e-35
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
               R+ L  A       +V++LL     ANV NA    G + +HSA+  G + +V  L+
Sbjct: 147 IKSGRSPLIHAVENNSLSMVQLLLQHG--ANV-NAQMYSGSSALHSASGRGLLPLVRTLV 203

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
             GAD +LKN    T L  A S+  + I+    +R A
Sbjct: 204 RSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  131 bits (331), Expect = 2e-38
 Identities = 28/112 (25%), Positives = 44/112 (39%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
                +D  T LH+A    H   ++ LL        ++  ++ G   +H AA +G  + V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWL 149
           E L + GA V +   GG TALH A          +L+             +L
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL 113

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  128 bits (325), Expect = 1e-37
 Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEM 99
            N D  T LHVA      E+V +L      A++ N  +   G  P+H A      +++E+
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAG--ADL-NKPEPTCGRTPLHLAVEAQAASVLEL 210

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           LL  GAD   +  GGRT L  A  +    +  LL + GA              
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCS 263

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  109 bits (274), Expect = 5e-30
 Identities = 21/116 (18%), Positives = 32/116 (27%), Gaps = 11/116 (9%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANV----------VNAVDEEGWAPIHSAAS 90
                 T LH+A          +LL    S              +   +   AP    + 
Sbjct: 74  AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ 133

Query: 91  IGNVT-IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
                            +  +N  G T LH A      ++V LL   GA +N  + 
Sbjct: 134 PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  106 bits (268), Expect = 3e-29
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
               RT LH+A       V+E+LL     A+   A    G  P+ SA    N  +  +L 
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAG--ADP-TARMYGGRTPLGSALLRPNPILARLLR 245

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           + GA          +    + S       +      
Sbjct: 246 AHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  103 bits (260), Expect = 5e-28
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---VNLKNDGGRTALHYAASKGWLKI 129
           V   V E+G   +H A    +   ++ LL   A    ++L+ND G+TALH AA  G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 130 VELLISRGAKINSKDKACW--LH 150
           VE L + GA +   ++     LH
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALH 83

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  128 bits (325), Expect = 2e-38
 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 6/114 (5%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
           ++  +   LL  A      +V EIL        V + VD EG  P++ A    ++ I + 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTT--YQV-DEVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKACW--LH 150
           L+ +GAD+NL+N    +   YA ++G  +I+  ++      +N  ++     L 
Sbjct: 58  LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALI 111

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  121 bits (305), Expect = 2e-35
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + +  T L++A      E+ + L+     A++ N  +    +P   A + G   I+  +
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALIDRG--ADI-NLQNSISDSPYLYAGAQGRTEILAYM 91

Query: 101 LSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKACW--LH 150
           L     D+N  N  G  AL  AA KG +  V+LL+  G   I+ ++   +  L 
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI 145

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  120 bits (303), Expect = 3e-35
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 10/118 (8%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N    +    A + G  E++  +L        +N  +  G   +  AA  G++  V++L
Sbjct: 68  QNSISDSPYLYAGAQGRTEILAYMLKHA--TPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125

Query: 101 LSKG-ADVNLKNDGGRTALHYAA-----SKGWLKIVELLISRGAKINSKDKACW--LH 150
           L  G  D++ +ND G TAL  A      ++ +  IV+LL+  GA  + KD +    + 
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD 183

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  112 bits (283), Expect = 4e-32
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT----- 95
            N      L  AA  GH + V++LL      ++ +  ++ G+  +  A  +         
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLEDG-REDI-DFQNDFGYTALIEAVGLREGNQLYQD 159

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
           IV++L+  GAD ++K++ GRTA+ YA  KG+ +I ++L  
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  132 bits (335), Expect = 2e-38
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA      +V++LL     A+V +A D+ G  P+H+A S G+  + E+L
Sbjct: 54  SDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADV-HAKDKGGLVPLHNACSYGHYEVTELL 110

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA VN  +    T LH AASK  +++  LL+S GA     + 
Sbjct: 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  126 bits (318), Expect = 7e-36
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 41  RNDDDRTLLHVAASCGH-PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             +  +  L  AA  G+  +++ +L  ++   N  +A D     P+H AA    V IV++
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLN--VNC-HASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           LL  GADV+ K+ GG   LH A S G  ++ ELL+  GA +N+ D 
Sbjct: 77  LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 122

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  125 bits (317), Expect = 7e-36
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 41  RNDDDRTLLHVAASCGHP---EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           +     T LH A +  HP   +V E+LL     ANV N  +++   P+H AA   +  ++
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAELLLRKG--ANV-NEKNKDFMTPLHVAAERAHNDVM 263

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           E+L   GA +N  +  G+TALH AA  G L+   LL+S G+  +    
Sbjct: 264 EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  121 bits (305), Expect = 4e-34
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N D  T LHVAA   H +V+E+L      A + NA+D  G   +H AA  G++    +L
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLHKHG--AKM-NALDSLGQTALHRAALAGHLQTCRLL 299

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLH 150
           LS G+D ++ +  G TA          + V+ ++S    + + D    L 
Sbjct: 300 LSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDYRLL 344

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  116 bits (294), Expect = 2e-32
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++      LH A S GH EV E+LL     A V NA+D   + P+H AAS   V +  +L
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLK--HGACV-NAMDLWQFTPLHEAASKNRVEVCSLL 143

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           LS GAD  L N  G++A+  A +    + +       + + 
Sbjct: 144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 99.5 bits (249), Expect = 7e-26
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 59  EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEMLLSKGADVNLKNDGGRTA 117
           +    L     SA       E     +  AA  GN   ++ +L     + +  +    T 
Sbjct: 5   KSALDLAD--PSAKA-VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61

Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           LH AA    ++IV+LL+  GA +++KDK     LH
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH 96

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 78.3 bits (194), Expect = 4e-18
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +   +T LH AA  GH +   +LLS    ++  + +  +G+              V+ +
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYG--SDP-SIISLQGFTAAQMGN-----EAVQQI 327

Query: 101 LSKGADVNLKNDGGRTALHYAASKG 125
           LS+   +   +   R  L  A+  G
Sbjct: 328 LSESTPMRTSDVDYR--LLEASKAG 350

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  129 bits (327), Expect = 2e-38
 Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N     LL  ++  G  ++V+ ++      +  +  ++EG   +H+A   G+  IV+ L+
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEV--DDP-SLPNDEGITALHNAVCAGHTEIVKFLV 90

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             G +VN  +  G T LH AAS   +++ + L+  GA + +   
Sbjct: 91  QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY 134

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  125 bits (315), Expect = 2e-36
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
              +  L         +     ++       V   +    A +  ++  G   +V+ ++ 
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHG--MR-VKF-NPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           +  D +L ND G TALH A   G  +IV+ L+  G  +N+ D   W  LH
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  121 bits (307), Expect = 2e-35
 Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            ND+  T LH A   GH E+V+ L+      NV NA D +GW P+H AAS  NV + + L
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFG--VNV-NAADSDGWTPLHCAASCNNVQVCKFL 122

Query: 101 LSKGADVNLKNDGG---RTALHYAASKGWLKIVELLISRGAKINSKDKACW--LHSIA 153
           +  GA V                   +G+ +  + L     K+   +K     L    
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYE 180

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  101 bits (253), Expect = 2e-27
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 3/106 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + D  T LH AASC + +V + L+    +   +   D +  A        G     + L
Sbjct: 99  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
                 + + N G   AL     +      EL +  G  +    + 
Sbjct: 159 YGVQEKMGIMNKGVIYALWDYEPQN---DDELPMKEGDCMTIIHRE 201

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 87.3 bits (217), Expect = 4e-22
 Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 1/68 (1%)

Query: 78  DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           +  G   +               ++ G  V   N      L  ++ +G   +V+ +I   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 138 AKINSKDK 145
              +  + 
Sbjct: 61  DDPSLPND 68

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  133 bits (336), Expect = 6e-38
 Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 4   DIDQTIKDKD--LFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAASCGHPE 59
                 +     L  A+  G     K+L    L +  S ++ N    T LH+AA  GH E
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
           V + LL     A V NA  ++   P+H AA IG+  +V++LL   A+ NL    G T LH
Sbjct: 62  VAKYLLQ--NKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH 118

Query: 120 YAASKGWLKIVELLISRGAKINSKDKACW--LH 150
            AA +G ++ V  L+ + A      K  +  LH
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLH 151

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  132 bits (335), Expect = 8e-38
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           +  +        L  AA  G   T  +L +++   S +       T LHVAA  G   V 
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEA--SQACMTKKGFTPLHVAAKYGKVRVA 162

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           E+LL  D  A+  NA  + G  P+H A    N+ IV++LL +G   +     G T LH A
Sbjct: 163 ELLLERD--AHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219

Query: 122 ASKGWLKIVELLISRGAKINSKDKACW--LH 150
           A +  +++   L+  G   N++       LH
Sbjct: 220 AKQNQVEVARSLLQYGGSANAESVQGVTPLH 250

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  131 bits (333), Expect = 1e-37
 Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 5/112 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA  GH E+V +LLS    AN  N  ++ G  P+H  A  G+V + ++L
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQ--ANG-NLGNKSGLTPLHLVAQEGHVPVADVL 297

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           +  G  V+     G T LH A+  G +K+V+ L+   A +N+K K  +  LH
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 349

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  129 bits (328), Expect = 8e-37
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              +  T LHVA    + ++V++LL      +  ++    G+ P+H AA    V +   L
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRG--GSP-HSPAWNGYTPLHIAAKQNQVEVARSL 231

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  G   N ++  G T LH AA +G  ++V LL+S+ A  N  +K
Sbjct: 232 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 276

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  129 bits (326), Expect = 2e-36
 Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N    T LH+ A  GH  V ++L+       V +A    G+ P+H A+  GN+ +V+ L
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHG--VMV-DATTRMGYTPLHVASHYGNIKLVKFL 330

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L   ADVN K   G + LH AA +G   IV LL+  GA  N    
Sbjct: 331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  119 bits (301), Expect = 7e-33
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LHVA+  G+ ++V+ LL     A+V NA  + G++P+H AA  G+  IV +L
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQ--ADV-NAKTKLGYSPLHQAAQQGHTDIVTLL 363

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELL---ISRGAKINSKDK 145
           L  GA  N  +  G T L  A   G++ + ++L       + +   DK
Sbjct: 364 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 411

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.9 bits (224), Expect = 5e-22
 Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 23/148 (15%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPE 59
            +D     +     L  A+  G+    K L + Q    ++ +     + LH AA  GH +
Sbjct: 303 MVD--ATTRMGYTPLHVASHYGNIKLVKFLLQHQA--DVNAKTKLGYSPLHQAAQQGHTD 358

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML---LSKGADVNLKNDGGRT 116
           +V +LL     A+  N V  +G  P+  A  +G +++ ++L     + + V + +    +
Sbjct: 359 IVTLLLKNG--ASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 415

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKD 144
                        V+ ++        + 
Sbjct: 416 FPE---------TVDEILDVSEDEGEEL 434

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.3 bits (181), Expect = 4e-16
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           S G       + G T LH A+  G L IV+ L+ RGA  N  +      LH
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLH 52

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  129 bits (327), Expect = 7e-38
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 6/112 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              D  + LH A   GH   V+ILL     A V N V  +   P+ +A   G+   V +L
Sbjct: 88  ITADHVSPLHEACLGGHLSCVKILLKHG--AQV-NGVTADWHTPLFNACVSGSWDCVNLL 144

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           L  GA V  ++D   + +H AA +G ++ V  LI+ G  I+ K       L+
Sbjct: 145 LQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY 195

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  127 bits (323), Expect = 2e-37
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              D + +H AA  GH   +  L+S      V N +  +  +P+H A   G+++ V++LL
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQG--WAV-NIITADHVSPLHEACLGGHLSCVKILL 112

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             GA VN       T L  A   G    V LL+  GA +  + 
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  125 bits (316), Expect = 3e-36
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             D  + +H AA  GH E V  L++     N+ +        P++ A        V+ LL
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYG--GNI-DHKISHLGTPLYLACENQQRACVKKLL 210

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GADVN +  G  + LH        ++  LL+  GA   +K+ 
Sbjct: 211 ESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNA 253

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  119 bits (300), Expect = 8e-34
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              D  T L  A   G  + V +LL     A+V    + +  +PIH AA  G+V  V  L
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHG--ASV-QP-ESDLASPIHEAARRGHVECVNSL 176

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           ++ G +++ K     T L+ A        V+ L+  GA +N   
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 220

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  109 bits (276), Expect = 2e-30
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +     T L++A        V+ LL     A+V N   +   +P+H+     +  +  +L
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESG--ADV-NQ-GKGQDSPLHAVVRTASEELACLL 241

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           +  GAD   KN  G+  +     +  L     L   GA + 
Sbjct: 242 MDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  109 bits (275), Expect = 4e-30
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
           D  +  +  +   G  +   I L  +    + +AV    W+P+H AA  G+   +  L+S
Sbjct: 25  DGKQGGMDGSKPAGPRDFPGIRLLSN--PLMGDAVS--DWSPMHEAAIHGHQLSLRNLIS 80

Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +G  VN+      + LH A   G L  V++L+  GA++N    
Sbjct: 81  QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 123

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 88.7 bits (221), Expect = 3e-22
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 51  VAASCGHPEVVEILLSVDESANVVNAVDEE-----GWAPIHSAASIGNVTIVEMLLSKGA 105
           + +S  H      L+     ++ + ++D +     G  P       G       LLS   
Sbjct: 1   MGSSHHHHHHSSGLVP--RGSH-MASMDGKQGGMDGSKPAGPRDFPG-----IRLLSNPL 52

Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             +  +    + +H AA  G    +  LIS+G  +N    
Sbjct: 53  MGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITA 90

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  127 bits (323), Expect = 1e-37
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASIGNVTIVEM 99
            + ++ TLLH AA     ++V+  +S    A V + +  +    P+H A   G++++V  
Sbjct: 38  PDKENVTLLHWAAINNRIDLVKYYISKG--AIV-DQLGGDLNSTPLHWATRQGHLSMVVQ 94

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           L+  GAD +L +  G + +H AA  G   IV  LI++G  ++  D+     L 
Sbjct: 95  LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLM 147

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  127 bits (322), Expect = 1e-37
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            D + T LH A   GH  +V  L+     A+  + +D EG + IH AA  G+ +IV  L+
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYG--ADP-SLIDGEGCSCIHLAAQFGHTSIVAYLI 129

Query: 102 SKGADVNLKNDGGRTALHYAASKG-WLKIVELLISRGAKINSKDK 145
           +KG DV++ +  G T L +AA +   +    LL++    +N  DK
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  123 bits (312), Expect = 5e-36
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEM 99
            + +  + +H+AA  GH  +V  L++     +V + +D+ G  P+  AA   +      +
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKG--QDV-DMMDQNGMTPLMWAAYRTHSVDPTRL 161

Query: 100 LLSKGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           LL+    VNL       TALH+A   G   ++ LL+  GA +++++ 
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  114 bits (287), Expect = 2e-32
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 41  RNDDDRTLLHVAASCGHP-EVVEILLSVDESANVVNAVDE-EGWAPIHSAASIGNVTIVE 98
            + +  T L  AA   H  +   +LL+ +   +V N  D+      +H A   GN T++ 
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFN--VSV-NLGDKYHKNTALHWAVLAGNTTVIS 194

Query: 99  MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           +LL  GA+V+ +N  G +AL  A  +  + ++  L          +
Sbjct: 195 LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  104 bits (263), Expect = 8e-29
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +  +D+     I  A   G       L+  G DV   +    T LH+AA    + +V+  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 134 ISRGAKINSKDK 145
           IS+GA ++    
Sbjct: 62  ISKGAIVDQLGG 73

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  124 bits (313), Expect = 2e-37
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                   L  AA+ G  E V  LL     A+  NA++  G  PI      G+  + E+L
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAG--ADP-NALNRFGRRPIQVMMM-GSAQVAELL 63

Query: 101 LSKGADVNLKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA+ N  +    T  +H AA +G+L  + +L   GA+++  D 
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  113 bits (286), Expect = 2e-33
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHSAASIGNVTIVEM 99
            N   R  + V    G  +V E+LL     A   N  D      P+H AA  G +  + +
Sbjct: 41  LNRFGRRPIQVMMM-GSAQVAELLLLHG--AEP-NCADPATLTRPVHDAAREGFLDTLVV 96

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           L   GA +++ +  GR  +  A  +G   I   L +   
Sbjct: 97  LHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  100 bits (252), Expect = 3e-28
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           ++ +     A + +AA+ G V  V  LL  GAD N  N  GR  +      G  ++ ELL
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELL 63

Query: 134 ISRGAKINSKDKACW---LH 150
           +  GA+ N  D A     +H
Sbjct: 64  LLHGAEPNCADPATLTRPVH 83

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 70.2 bits (173), Expect = 2e-16
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 41  RNDDDRTL-LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
            +    T  +H AA  G  + + +L      A + +  D  G  P+  A   G+  I   
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAG--ARL-DVCDAWGRLPVDLAEEQGHRDIARY 129

Query: 100 LLSKGAD 106
           L +   D
Sbjct: 130 LHAATGD 136

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  123 bits (311), Expect = 6e-37
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N   +T L V    G   +   LL     A+  N  D  G +P+H AA  G +  +++L
Sbjct: 32  LNRFGKTALQVMMF-GSTAIALELLKQG--ASP-NVQDTSGTSPVHDAARTGFLDTLKVL 87

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +  GADVN+ +  G   +H A  +G   +V  L +  + ++ +D 
Sbjct: 88  VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDA 131

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  120 bits (303), Expect = 1e-35
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
             L  AA+ G  + V  LL   E  +  +A++  G   +      G+  I   LL +GA 
Sbjct: 4   DRLSGAAARGDVQEVRRLLH-RELVH-PDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
            N+++  G + +H AA  G+L  +++L+  GA +N  D      +H
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  109 bits (275), Expect = 1e-31
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++    + +H AA  G  + +++L+     A+V N  D  G  PIH A   G+  +V  L
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHG--ADV-NVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
            +  +D++ ++  G T L  A  +G   +V++L  
Sbjct: 121 AA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 84.4 bits (210), Expect = 9e-22
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 81  GWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
               +  AA+ G+V  V  LL  +    +  N  G+TAL      G   I   L+ +GA 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 140 INSKDK 145
            N +D 
Sbjct: 61  PNVQDT 66

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  121 bits (306), Expect = 6e-37
 Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 3/95 (3%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           + RT LH+AA  GH EVV++LL     A+V NA D+ G  P+H AA  G++ +V++LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA--GADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           GADVN K+  GRT LH AA  G L++V+LL+  GA
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 97.0 bits (243), Expect = 2e-27
 Identities = 33/65 (50%), Positives = 46/65 (70%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           G  P+H AA  G++ +V++LL  GADVN K+  GRT LH AA  G L++V+LL+  GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 141 NSKDK 145
           N+KDK
Sbjct: 62  NAKDK 66

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  124 bits (314), Expect = 1e-36
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 2/109 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T L+ A   GH ++VE+L +   +  + N  ++ G   +H+AA  G   IV++L
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEMLFT-QPNIEL-NQQNKLGDTALHAAAWKGYADIVQLL 159

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWL 149
           L+KGA  +L+N   + A   A +     +++      A     +   +L
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYL 208

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  113 bits (285), Expect = 3e-32
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 11/133 (8%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           +F+A  T +  T   L  ++    +    D   T      S G   ++         +N 
Sbjct: 16  VFRALYTFEPRTPDELYIEE--GDIIYITDMSDTNWWKGTSKGRTGLIP--------SNY 65

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           V    E    P+H AA  GN++ +   L     VN  +  G TAL++A   G   IVE+L
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125

Query: 134 IS-RGAKINSKDK 145
            +    ++N ++K
Sbjct: 126 FTQPNIELNQQNK 138

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  101 bits (254), Expect = 1e-27
 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 10/107 (9%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           +  +  A     P   + L    E  + +  + +          S G        L    
Sbjct: 13  QVKVFRALYTFEPRTPDELYI--EEGD-IIYITDMSDTNWWKGTSKGRT-----GLIPSN 64

Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
            V  + +     LH AA +G L  +   +     +N  DKA    L+
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALY 111

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 91.5 bits (228), Expect = 8e-24
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N    T LH AA  G+ ++V++LL+    A   +  + E       A +    ++++  
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKG--ART-DLRNIEKKLAFDMATNAACASLLKKK 192

Query: 101 LSKGADVNLKNDGGRTALHYAASKG 125
               A   L N         +  + 
Sbjct: 193 QGTDAVRTLSNAEDYLDDEDSDLEH 217

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  124 bits (314), Expect = 2e-36
 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 12/149 (8%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSL----SKQQLLKSLSLRNDDDRTLLHVAASCGH 57
           D  ++D      L  A E G  ++   L    +   L   L   N +  T LH+A+  G+
Sbjct: 70  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129

Query: 58  PEVVEILLSVDESANVVNAVDE-EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116
             +VE+L+S+   A+V NA +   G   +H A  + N  +V +LL  GADVN     G +
Sbjct: 130 LGIVELLVSLG--ADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDK 145
                  +   +I + L     +      
Sbjct: 187 PYQLTWGRPSTRIQQQLGQLTLENLQMLP 215

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  123 bits (310), Expect = 6e-36
 Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 19/150 (12%)

Query: 10  KDKD----LFKAAETGDSSTFKSLSKQQLLKS----LSLRNDDDRTLLHVAASCGHPEVV 61
             +D    L  A    + +    + +   +K     L+ +N+  +T LH+A     PE+ 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIR--QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD------VNLKNDGGR 115
           E LL      +     D  G  P+H A   G +  V +L            +   N  G 
Sbjct: 62  EALLGA--GCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 118

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDK 145
           T LH A+  G+L IVELL+S GA +N+++ 
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGADVNAQEP 148

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  114 bits (287), Expect = 2e-32
 Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 15/121 (12%)

Query: 42  NDDDRTLLHVAASCGHP----EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
            +D  + LH+A          EV+  +      A + N  +     P+H A       I 
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDL--AFL-NFQNNLQQTPLHLAVITNQPEIA 61

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA------KINSKDKACW--L 149
           E LL  G D  L++  G T LH A  +G L  V +L            + + +      L
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 150 H 150
           H
Sbjct: 122 H 122

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 92.6 bits (231), Expect = 4e-24
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 76  AVDEEGWAPIHSAASIGNVT----IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
            + E+G + +H A           ++  +    A +N +N+  +T LH A      +I E
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 132 LLISRGAKINSKDKACW--LH 150
            L+  G     +D      LH
Sbjct: 63  ALLGAGCDPELRDFRGNTPLH 83

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 90.3 bits (225), Expect = 4e-23
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             + RT LH+A    +P++V +LL     A+V N V  +G++P        +  I + L 
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCG--ADV-NRVTYQGYSPYQLTWGRPSTRIQQQLG 204

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVE 131
               +             Y     + +  E
Sbjct: 205 QLTLENLQMLPESEDEESYDTESEFTEFTE 234

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  124 bits (313), Expect = 2e-36
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           +   LL  AA  G  EVV+  +      +  +  +EEG   +H+A    N +IV+ L++ 
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEM--NDP-SQPNEEGITALHNAICGANYSIVDFLITA 76

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           GA+VN  +  G T LH AAS     I   L+  GA I +   
Sbjct: 77  GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  116 bits (294), Expect = 1e-33
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N++  T LH A    +  +V+ L++    AN VN+ D  GW P+H AAS  +  I   L+
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAG--AN-VNSPDSHGWTPLHCAASCNDTVICMALV 107

Query: 102 SKGADVNLKND-GGRTALHYAAS--KGWLKIVELLISRGAKINSKDKACW--LHSIA 153
             GA +       G TA        +G+      L      +   +      L   +
Sbjct: 108 QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS 164

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  105 bits (263), Expect = 6e-29
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 61  VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
           +  +L    S              +  AA  G + +V+  + +  D +  N+ G TALH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 121 AASKGWLKIVELLISRGAKINSKDKACW--LH 150
           A       IV+ LI+ GA +NS D   W  LH
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLH 92

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 98.1 bits (245), Expect = 3e-26
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 9/115 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASI--GNVTIV 97
            +    T LH AASC    +   L+     A  + A    +G            G     
Sbjct: 83  PDSHGWTPLHCAASCNDTVICMALVQHG--AA-IFATTLSDGATAFEKCDPYREGYADCA 139

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
             L      + L N G   AL   +++     +         +  +D        
Sbjct: 140 TYLADVEQSMGLMNSGAVYALWDYSAEF-GDELSFREGESVTVLRRDGPEETDWW 193

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.8 bits (187), Expect = 9e-18
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 6/92 (6%)

Query: 42  NDDDRTLLHVAASC--GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             D  T          G+ +    L  V++S   +  ++      +   ++      +  
Sbjct: 118 LSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSA-EFGDELSF 173

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
              +   V  ++    T   +AA  G    V 
Sbjct: 174 REGESVTVLRRDGPEETDWWWAALHGQEGYVP 205

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  124 bits (314), Expect = 8e-36
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             DD  +   A S G  E V  LL     A++ N  + +G   +H A    NV +V+ L+
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERG--ADI-NYANVDGLTALHQACIDDNVDMVKFLV 93

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GA++N  ++ G   LH AAS G+L I E LIS+GA + + + 
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS 137

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  123 bits (312), Expect = 2e-35
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
           + +   +    +    G    +E  +   +         ++G   +  A S G+   V  
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVV--KRKKT-KVKFDDGAVFLA-ACSSGDTEEVLR 58

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           LL +GAD+N  N  G TALH A     + +V+ L+  GA IN  D   W  LH
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLH 111

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  121 bits (305), Expect = 2e-34
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LHVAA+ G+ EV+++L+      +V N  D +GW P+H+AA  G      +L
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQAR--YDV-NIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +    D+   N  G+TA   A       + EL   +    + K +
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRE 296

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  121 bits (305), Expect = 2e-34
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 15/144 (10%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
                + +    L  A E       ++         ++ +  D              +  
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNE--------VNRQGVDIEAARKEEERIMLRDAR 182

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           + L S     N      + G   +H AA+ G   ++++L+    DVN+K+  G T LH A
Sbjct: 183 QWLNSGH--IND-VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA 239

Query: 122 ASKGWLKIVELLISRGAKINSKDK 145
           A  G  +   +L+     + + +K
Sbjct: 240 AHWGKEEACRILVENLCDMEAVNK 263

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  119 bits (300), Expect = 1e-33
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 4/107 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N D  T LH A    + ++V+ L+     AN+ N  D EGW P+H+AAS G + I E L
Sbjct: 69  ANVDGLTALHQACIDDNVDMVKFLVENG--ANI-NQPDNEGWIPLHAAASCGYLDIAEYL 125

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKA 146
           +S+GA V   N  G T L  A  +   ++++  ++R G  I +  K 
Sbjct: 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE 172

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 80.6 bits (200), Expect = 3e-19
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +   D +          IG+ T +E  + K     +K D G      A S G  + V  L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 134 ISRGAKINSKDK 145
           + RGA IN  + 
Sbjct: 60  LERGADINYANV 71

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.4 bits (158), Expect = 3e-13
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D  T LH AA  G  E   IL+      ++  AV++ G      A       + E+ 
Sbjct: 228 KDYDGWTPLHAAAHWGKEEACRILVENL--CDM-EAVNKVGQTAFDVADEDILGYLEELQ 284

Query: 101 LSKGADVNLKNDG 113
             +    + K + 
Sbjct: 285 KKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.7 bits (125), Expect = 9e-09
 Identities = 4/48 (8%), Positives = 12/48 (25%), Gaps = 1/48 (2%)

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW-LHSIA 153
           + + +   +         G    +E  + +  K   K        +  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAAC 48

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  123 bits (312), Expect = 1e-35
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    +  + A +  +  +V  LL+    A   N ++     P+H AA++ +  IV++L
Sbjct: 27  ADVHGHSASYYAIADNNVRLVCTLLN--AGALK-NLLE--NEFPLHQAATLEDTKIVKIL 81

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW---LH 150
           L  G D +  +D G TAL+YA   G ++ V+L + +  ++    K  W    +
Sbjct: 82  LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFY 134

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  120 bits (303), Expect = 2e-34
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           ++   LH AA+    ++V+ILL      +  +  D++G   ++ A   GN+  V++ + K
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSG--LDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKK 117

Query: 104 GADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
              +      G +T+ ++A     + IV   +S               +H
Sbjct: 118 NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFDLAILLSCIH 166

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  118 bits (298), Expect = 1e-33
 Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA-PIHSAASIGNVTIVEM 99
            +D   T L+ A   G+ + V++ +  +    +     + GW    + A  + +V+IV  
Sbjct: 91  FDDKGNTALYYAVDSGNMQTVKLFVKKN--WRL-MFYGKTGWKTSFYHAVMLNDVSIVSY 147

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW---LH 150
            LS+            + +H     G + ++ LL+      N+ +   +   + 
Sbjct: 148 FLSEIPSTFDLAIL-LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIK 200

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  118 bits (297), Expect = 2e-33
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
               +T  + A       +V   LS  E  +          + IH     G+V ++ +LL
Sbjct: 126 KTGWKTSFYHAVMLNDVSIVSYFLS--EIPS--TFDLAILLSCIHITIKNGHVDMMILLL 181

Query: 102 SKGADVNLKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDK 145
                 N  N       +  A     +++++ L      I S + 
Sbjct: 182 DYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL 226

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  108 bits (272), Expect = 1e-29
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
            L  +       + ++  LS   S +     D  G +  + A +  NV +V  LL+ GA 
Sbjct: 3   DLSRIN--TWKSKQLKSFLS---SKDT-FKADVHGHSASYYAIADNNVRLVCTLLNAGAL 56

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            NL        LH AA+    KIV++L+  G   +  D 
Sbjct: 57  KNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDD 93

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 76.8 bits (190), Expect = 8e-18
 Identities = 12/106 (11%), Positives = 31/106 (29%), Gaps = 12/106 (11%)

Query: 41  RNDDDRT-LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
            N       + +A      E+++ L   D   N+  + +            + +  I +M
Sbjct: 190 NNSLLFIPDIKLAIDNKDIEMLQALFKYD--INI-YSAN-------LENVLLDDAEIAKM 239

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           ++ K  +    +      +        +      + R   +N   K
Sbjct: 240 IIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKEL-RLMYVNCVKK 284

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 75.6 bits (187), Expect = 2e-17
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 87  SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
           S  +      ++  L    D    +  G +A +YA +   +++V  L++ GA  N  +  
Sbjct: 5   SRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE 63

Query: 147 CWLH 150
             LH
Sbjct: 64  FPLH 67

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  121 bits (307), Expect = 1e-35
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS--VDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           R     T LH+AA   + E   +L+    +     + +   EG   +H A    NV +V 
Sbjct: 33  RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92

Query: 99  MLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            LL++GA V+ +  G             G   L +AA  G  +IV LLI  GA I ++D 
Sbjct: 93  ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  115 bits (289), Expect = 8e-33
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           + L +AA     + +  LL   E   V +     G   +H AA   N+    +L+    +
Sbjct: 5   SPLLLAAKENDVQALSKLL-KFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 107 V-----NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPGS 156
           +       +   G+TALH A     + +V  L++RGA ++++      H      
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  110 bits (277), Expect = 6e-31
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----VDESAN------VVNAVDEEGWAPIHSAAS 90
              + +T LH+A    +  +V  LL+    V   A         + +   G  P+  AA 
Sbjct: 71  ELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC 130

Query: 91  IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV----ELLISRGAKINSKD 144
           +G+  IV +L+  GAD+  ++  G T LH    +           LL+S     + K 
Sbjct: 131 VGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS 188

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 114 GRTALHYAASKGWLKIV-ELLISRGAKINSKDKACW--LH 150
             + L  AA +  ++ + +LL   G +++ +       LH
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALH 42

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  119 bits (300), Expect = 2e-35
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHSAASIGNVTIVEM 99
            N   R  + V    G   V E+LL     A   N  D      P+H AA  G +  + +
Sbjct: 41  PNSYGRRPIQVMMM-GSARVAELLLLHG--AEP-NCADPATLTRPVHDAAREGFLDTLVV 96

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L   GA +++++  GR  +  A   G   +   L +        + 
Sbjct: 97  LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 96.8 bits (242), Expect = 2e-26
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
             +  E     + +AA+ G V  V  LL  GA+ N  N  GR  +      G  ++ ELL
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELL 63

Query: 134 ISRGAKINSKDKACW---LH 150
           +  GA+ N  D A     +H
Sbjct: 64  LLHGAEPNCADPATLTRPVH 83

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 86.4 bits (215), Expect = 1e-22
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 41  RNDDDRTL-LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
            +    T  +H AA  G  + + +L      A + +  D  G  P+  A  +G+  +   
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAG--ARL-DVRDAWGRLPVDLAEELGHRDVARY 129

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           L +           G       A++G   I +
Sbjct: 130 LRAAAGGTR-----GSNHARIDAAEGPSDIPD 156

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  123 bits (310), Expect = 1e-34
 Identities = 16/106 (15%), Positives = 46/106 (43%), Gaps = 2/106 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESAN--VVNAVDEEGWAPIHSAASIGNVTIVE 98
           ++  D T L  A    + E +++++    S +   ++  +++G + +H A  I    +  
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM 228

Query: 99  MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             +  G DVN++++     L+ +     + + + L+ +      + 
Sbjct: 229 RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA 274

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (305), Expect = 5e-34
 Identities = 12/115 (10%), Positives = 37/115 (32%), Gaps = 10/115 (8%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----------VDESANVVNAVDEEGWAPIHSAAS 90
            +++    L+++       + + LL              +   V          + +AA 
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD 299

Query: 91  IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
                ++++L  K  +V    + G         K    +  + ++  A + ++ +
Sbjct: 300 PSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSR 354

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (305), Expect = 7e-34
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 12/119 (10%)

Query: 41  RNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           ++   +T LH     G  + E+++IL+ +   A+   A D+    P+  A    N   ++
Sbjct: 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLG--ASP-TAKDKADETPLMRAMEFRNREALD 190

Query: 99  MLL-----SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           +++          ++  N  G + LH+A    W  +    +  G  +N +D      L+
Sbjct: 191 LMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLY 249

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  116 bits (294), Expect = 2e-32
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D++   +HVAA  G  + V  L+      +     +  G   +H A   G V   + L
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETG--VSP-TIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
            S G   +L +  G+  +H A       +V  L+    +  
Sbjct: 73  ASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERG 111

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  114 bits (289), Expect = 1e-31
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 27/169 (15%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKS---LSLRNDDDRTLLHVAASCG 56
                 KDK     L +A E  +      +      KS   L   N    + LH A    
Sbjct: 165 SPT--AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN 222

Query: 57  HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND---- 112
             +V    + +    +V N  D E   P++ +     V + + LL K     ++      
Sbjct: 223 WEDVAMRFVEMG--IDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN 279

Query: 113 ---------GGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
                         +  AA     ++++LL  +  ++            
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAV 328

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  103 bits (260), Expect = 2e-27
 Identities = 21/71 (29%), Positives = 28/71 (39%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
               D+E    IH AA  G    V  L+  G    ++N  G TALH A   G +   + L
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 134 ISRGAKINSKD 144
            S G   +   
Sbjct: 73  ASVGEVHSLWH 83

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 98.0 bits (245), Expect = 2e-25
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 19/111 (17%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
             +  +H+A      ++V  L+             E G  P           + E     
Sbjct: 83  HGQKPIHLAVMANKTDLVVALVE---------GAKERGQMPESLLNECDEREVNE----- 128

Query: 104 GADVNLKNDGGRTALHYAASKGW--LKIVELLISRGAKINSKDKACW--LH 150
               ++K+  G+TALH+    G   L+++++L+  GA   +KDKA    L 
Sbjct: 129 -IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLM 178

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 93.4 bits (233), Expect = 2e-23
 Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 3/81 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                   +  AA     EV+++L        V       G              +  M 
Sbjct: 286 DRVVWLDFVPAAADPSKQEVLQLLQEKL--DEV-VRSLNTGAGGAVKRKKKAAPAVKRMK 342

Query: 101 LSKGADVNLKNDGGRTALHYA 121
           L+  A V  ++     +   +
Sbjct: 343 LAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 69.1 bits (170), Expect = 8e-15
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 99  MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LH 150
           M      +    +D     +H AA KG    V  LI  G     +++     LH
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALH 58

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  120 bits (302), Expect = 1e-34
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEM 99
            +++ RT L   A  G  + V +L      A++ +  D   G   +H AA      +VE 
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAG--ADL-DHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHS 151
           L+  GAD+ ++++ G TAL  A            +  G +I  +     L  
Sbjct: 130 LVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG 181

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  111 bits (280), Expect = 2e-31
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             +      +    GH         +  +A+V      E   P  +AA   +   +  LL
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYI--AADV----VSEYETPWWTAARKADEQALSQLL 65

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            +  DV+  ++ GRTAL + A  G  K V LL   GA ++ +D 
Sbjct: 66  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 108

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  103 bits (260), Expect = 2e-28
 Identities = 27/131 (20%), Positives = 41/131 (31%), Gaps = 25/131 (19%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
                T LH+AA    PEVVE L+ +   A++    DE G   +  A  I   T     +
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELG--ADI-EVEDERGLTALELAREILKTTPKGNPM 164

Query: 102 SKGADVNLKN---------------------DG-GRTALHYAASKGWLKIVELLISRGAK 139
             G  + L+                       G G+   +    K       +     A+
Sbjct: 165 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224

Query: 140 INSKDKACWLH 150
             +KD    L 
Sbjct: 225 DVAKDYEDGLE 235

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 75.3 bits (186), Expect = 2e-17
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132
           + +    EG          G+           ADV  +     T    AA K   + +  
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQ 63

Query: 133 LISRGAKINSKDKACW--LH 150
           L+     +++ D+     L 
Sbjct: 64  LLE-DRDVDAVDENGRTALL 82

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 72.6 bits (179), Expect = 2e-16
 Identities = 9/104 (8%), Positives = 23/104 (22%), Gaps = 21/104 (20%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----VDESANV---------------VNAVDEEG 81
            ++   T L +A            +     +     +               +     +G
Sbjct: 140 EDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKG 199

Query: 82  WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG 125
               +            +     A+   K+      L YA ++ 
Sbjct: 200 KDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAES 241

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  118 bits (298), Expect = 3e-34
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              +  + ++A S    E+ E +L+    +      D++    +H A S G+  IVE LL
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADK--SLA-TRTDQDSRTALHWACSAGHTEIVEFLL 60

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
             G  VN K+D G + LH AAS G  +IV+ L+ +GA +N+ ++   
Sbjct: 61  QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC 107

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  102 bits (255), Expect = 7e-28
 Identities = 50/108 (46%), Positives = 62/108 (57%), Gaps = 3/108 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + D RT LH A S GH E+VE LL +     V N  D+ GW+P+H AAS G   IV+ L
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLG--VPV-NDKDDAGWSPLHIAASAGXDEIVKAL 92

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
           L KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    
Sbjct: 93  LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA 140

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 91.1 bits (226), Expect = 2e-23
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 11/149 (7%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPE 59
            ++   KD      L  AA  G     K+L  +     ++  N +  T LH AAS    E
Sbjct: 65  PVN--DKDDAGWSPLHIAASAGXDEIVKALLVKG--AHVNAVNQNGCTPLHYAASKNRHE 120

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
           +  +LL    +    +A D      +H AA+ GN+ +V +LL   A  N+++  G T LH
Sbjct: 121 IAVMLLEGGAN---PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177

Query: 120 YAASKGWLKIVELLISRGAKINSKDKACW 148
            A  +  ++  + L+++GA I  ++K   
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEK 206

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 87.2 bits (216), Expect = 5e-22
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 7/128 (5%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  AA          L +     +   ++  D T +H AA+ G+ ++V ILL    S   
Sbjct: 110 LHYAASKNRHEIAVMLLEGG--ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS--- 164

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
            N  D EG  P+H A     V   + L+++GA + ++N   +T L  A   G L ++   
Sbjct: 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222

Query: 134 ISRGAKIN 141
           ++ G + +
Sbjct: 223 LAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 19/108 (17%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 2   DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           + D         + +AA  G+      L   +   S ++++ +  T LH+A      E  
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYK--ASTNIQDTEGNTPLHLACDEERVEEA 188

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL 109
           + L++   S   +   ++E   P+  A   G + ++   L++G + ++
Sbjct: 189 KFLVTQGAS---IYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 4/36 (11%), Positives = 12/36 (33%)

Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
                    + A S    ++ E +++  +     D+
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQ 38

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  121 bits (307), Expect = 4e-34
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                RT LH AA   +  +V+ L+  ++ +N  +  DE+G  PI  AA  G + +V  L
Sbjct: 275 EKYKGRTALHYAAQVSNMPIVKYLVG-EKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYL 332

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           + +GA V   +    TA   A +     IV++      + 
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  120 bits (304), Expect = 8e-34
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 18/153 (11%)

Query: 9   IKDKD----LFKAAETGDSSTFKSL-SKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           I +K     L +AA   D      + +  +L   +   + +  T L + A     + V  
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253

Query: 64  ---LLSVDESANV-------VNAVDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKND 112
              L+     A V        ++   +G   +H AA + N+ IV+ L+  KG++ + +++
Sbjct: 254 AKLLVEKG--AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 311

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            G+T +  AA +G +++V  LI +GA + + D 
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA 344

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  120 bits (303), Expect = 1e-33
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS------VDESANVVNAVDEEGWAPIHSAASIGNV 94
               +RT+LH  AS    E  E L+       +   A+V NA+D +   P+  A      
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRR 179

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS---RGAKINSKDK 145
            +V  L+  GAD  + N   R+ALH AA+     ++  +++       I   D+
Sbjct: 180 RLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  114 bits (288), Expect = 2e-31
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 19/153 (12%)

Query: 10  KDKD----LFKAAETGDSSTFKSLSKQQLLKSLSL------RNDDDRTLLHVAASCGHPE 59
             +     L   A    +   + L   +  + ++        + D+ T L +A       
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK---GADVNLKNDGGRT 116
           +V  L+     A+     ++   + +H AA+  +  ++  +L+      D+   +  G T
Sbjct: 181 LVAYLMKAG--ADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT 237

Query: 117 ALHYAA---SKGWLKIVELLISRGAKINSKDKA 146
           AL   A    +  +   +LL+ +GAK++    A
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  108 bits (272), Expect = 4e-29
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 13/114 (11%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
                           G+  + +   +      +    + E    +H+ A+ G+  I E 
Sbjct: 56  ELQHYSLYPNPQGYGNGNDFLGDFNHTNL---QIPTEPEPESPIKLHTEAA-GSYAITEP 111

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI--------SRGAKINSKDK 145
           +  +  ++       RT LH+ AS    +  E LI        + GA +N+ D 
Sbjct: 112 ITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC 164

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 93.9 bits (234), Expect = 9e-24
 Identities = 14/103 (13%), Positives = 23/103 (22%), Gaps = 13/103 (12%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
               +  L  A+  G+ +               N +      P       GN  + +   
Sbjct: 34  ITSSQHSLLEASYDGYIKRQR------------NELQHYSLYPNPQGYGNGNDFLGDFNH 81

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           +               LH  A  G   I E +      I    
Sbjct: 82  TNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPR 123

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 63.4 bits (155), Expect = 8e-13
 Identities = 9/84 (10%), Positives = 18/84 (21%), Gaps = 11/84 (13%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           +         +  A+  G +             N                G   + +   
Sbjct: 31  HQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDFLGDFNH 81

Query: 135 SRGAKINSKDKACW--LHSIAPGS 156
           +        +      LH+ A GS
Sbjct: 82  TNLQIPTEPEPESPIKLHTEAAGS 105

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  107 bits (270), Expect = 2e-31
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
            +S  H      L+     +++      +    +  AA  G    V +L++ GADV  K+
Sbjct: 1   GSSHHHHHHSSGLVPRG--SHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAAKD 54

Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
             G T LH AA  G L++V+LL+  GA + ++DK   
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK 91

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 98.4 bits (246), Expect = 1e-27
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             D    L  AA  G  + V IL++    A+V  A D+ G  P+H AA  G++ +V++LL
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANG--ADV-AAKDKNGSTPLHLAARNGHLEVVKLLL 77

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
             GADV  ++  G+TA   +   G   + E+L
Sbjct: 78  EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 53.3 bits (129), Expect = 4e-10
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ +  T LH+AA  GH EVV++LL     A+ V A D+ G      +   GN  + E+L
Sbjct: 53  KDKNGSTPLHLAARNGHLEVVKLLLEAG--AD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  108 bits (271), Expect = 1e-30
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 16/118 (13%)

Query: 41  RNDDDRTLLHVAASCGH------PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94
           R  +  TL       G        E+ +I L  ++ A++  A+ +     +        V
Sbjct: 71  RTKEGTTLFFPLFQGGGNDITGTTELCKIFL--EKGADI-TALYKPYKIVVFKNIFNYFV 127

Query: 95  TIVEM-------LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
              EM           G  + +K+  G TAL +         ++++     K N K+ 
Sbjct: 128 DENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  102 bits (255), Expect = 3e-28
 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 6/108 (5%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
            +   +  AA  G  E    L                 +  + +        I   L++K
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 104 GADVNLKNDGGRTALHYAASKG------WLKIVELLISRGAKINSKDK 145
           GAD+  +   G T        G        ++ ++ + +GA I +  K
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK 112

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 14/85 (16%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKS-----LSLRNDDDRTLLHVAAS 54
           DI      K     +FK          + +   +L+ S     L +++    T L     
Sbjct: 106 DIT--ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163

Query: 55  CGHPEVVEILLSVDESANVVNAVDE 79
           C  P  ++++   D      N  + 
Sbjct: 164 CQKPIALKMME--DYIKK-YNLKEN 185

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  107 bits (268), Expect = 2e-29
 Identities = 34/175 (19%), Positives = 57/175 (32%), Gaps = 35/175 (20%)

Query: 14  LFKAAETGDSSTFKSL------SKQQLLKSLSLRNDDDRTLLHVAA---SCGHPEVVEIL 64
           LF     G       L      + + L  S        +T L  A      G    +  L
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 65  LSVDESANV--------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG--- 113
           L +D+ +                +G + +H A    ++  V++L+  GADV+L+  G   
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125

Query: 114 ----------GRTALHYAASKGWLKIVELLISRG---AKINSKDKACW--LHSIA 153
                     G   L  AA      +V  L+      A + + D      LH++ 
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  101 bits (254), Expect = 2e-27
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 16/118 (13%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI---------- 91
                  L +AA     +VV  LL        + A D  G   +H+   I          
Sbjct: 133 FYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSAL 192

Query: 92  ------GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
                 G + +   L        + N  G T L  AA +G ++I   ++ R     + 
Sbjct: 193 VIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 84.5 bits (209), Expect = 7e-21
 Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 19/123 (15%)

Query: 45  DRTLLHVAASCGHPEVVEILL-----SVDESANVVNAVDEEGWAPIHSAA---SIGNVTI 96
           DR  L    S G PE +  LL     +     +        G   +  A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 97  VEMLLSKG-----------ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +  LL              A    +   G +ALH A  K  L+ V+LL+  GA ++ +  
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 146 ACW 148
             +
Sbjct: 122 GRF 124

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 62.5 bits (152), Expect = 1e-12
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 10/82 (12%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N  + + L +    G  ++   L             + +G  P+  AA  G + I   +
Sbjct: 184 DNSPENSALVIHMYDGLLQMGARLCP--TVQLE-EISNHQGLTPLKLAAKEGKIEIFRHI 240

Query: 101 LSKGADVNLKNDGGRTALHYAA 122
           L +             A H+  
Sbjct: 241 LQREFSGA-------AAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 6   DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
           D + ++  L      G       L      +   + N    T L +AA  G  E+   +L
Sbjct: 184 DNSPENSALVIHMYDGLLQMGARLCPTV--QLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241

Query: 66  SVDESANVVNAVD 78
             + S    +   
Sbjct: 242 QREFSGAAAHHHH 254

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  103 bits (259), Expect = 4e-28
 Identities = 37/170 (21%), Positives = 50/170 (29%), Gaps = 38/170 (22%)

Query: 12  KDLFKAAETGDSSTFKSLSKQQLLKSL--------SLRNDDDRTLLHVAA---SCGHPEV 60
             LF     G     + L     L +                +T L  A    S G  + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLS--FLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 61  VEILLSVDESANV--------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
           + ILL + E               V   G   +H A        VE+L+ KGADV+ +  
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 113 G--------------GRTALHYAASKGWLKIVELLISRG---AKINSKDK 145
           G              G   L  AA      IV  L   G   A +  +D 
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDS 174

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 99.9 bits (249), Expect = 1e-26
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN---------VTI 96
              L +AA    P +V  L         +   D  G   +H+  +I +           +
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200

Query: 97  VEMLLSKGADVN-------LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            ++LL K A +        L N+ G + L  AA  G + I + +I R     +   
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 88.7 bits (220), Expect = 2e-22
 Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 23/129 (17%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----VDESAN-------VVNAVDEEGWAPIHSAA 89
                +T LH+A        VE+L+     V   A                G  P+  AA
Sbjct: 89  VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA 148

Query: 90  SIGNVTIVEMLLSKG---ADVNLKNDGGRTALHYAA---------SKGWLKIVELLISRG 137
                 IV  L   G   AD+  ++  G T LH            +K   K+ +LL+ + 
Sbjct: 149 CTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208

Query: 138 AKINSKDKA 146
           AK+      
Sbjct: 209 AKLFPDTNL 217

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 86.0 bits (213), Expect = 2e-21
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 25/128 (19%)

Query: 45  DRTLLHVAASCG----HPEVVEILLSVDESANVVNAVDEE----GWAPIHSAA---SIGN 93
           +R +L    S G       ++  LL+      +    +      G   +  A    S G 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLT--HKKRL-TDEEFREPSTGKTCLPKALLNLSAGR 61

Query: 94  VTIVEMLLSKGAD-----------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
              + +LL                       G+TALH A  +     VELL+ +GA +++
Sbjct: 62  NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA 121

Query: 143 KDKACWLH 150
           + +  +  
Sbjct: 122 QARGRFFQ 129

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  102 bits (256), Expect = 2e-27
 Identities = 40/187 (21%), Positives = 65/187 (34%), Gaps = 42/187 (22%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDD-------RTLLHVA---A 53
             D+      +F A    +    +SL    L +S     D +       +T L  A    
Sbjct: 11  LYDRRS----IFDAVAQSNCQELESL-LPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNL 65

Query: 54  SCGHPEVVEILLSVDESANV--------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
             G  + + +LL V    +               +G   +H A    N+T+V +L+  GA
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 106 DVNLKNDG--------------GRTALHYAASKGWLKIVELLISRG---AKINSKDKACW 148
           DV    +G              G   L  AA    L IV+ L+      A I+++D    
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN 185

Query: 149 --LHSIA 153
             LH++ 
Sbjct: 186 TVLHALV 192

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 92.9 bits (231), Expect = 7e-24
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 16/112 (14%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM------ 99
              L +AA      +V+ LL        ++A D  G   +H+   + + T+         
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 100 ----------LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
                     L        + N  G T L  AAS G + ++  ++ R     
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 90.6 bits (225), Expect = 5e-23
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 19/128 (14%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDES-----ANVVNAVDEEGWAPIHSAASI---GN 93
              DR  +  A +  + + +E LL   +       +      E G   +  A      G 
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 94  VTIVEMLLSKGAD-----------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
              + +LL                       G+TALH A  +  + +V LL+  GA + +
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 143 KDKACWLH 150
                +  
Sbjct: 130 AANGDFFK 137

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 84.1 bits (208), Expect = 1e-20
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 23/126 (18%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----VDESAN-------VVNAVDEEGWAPIHSAA 89
                +T LH+A    +  +V +L+     V  +AN               G  P+  AA
Sbjct: 97  SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA 156

Query: 90  SIGNVTIVEMLLSKG---ADVNLKNDGGRTALHYAASKG---------WLKIVELLISRG 137
               + IV+ LL      AD++ ++  G T LH                  +   ++  G
Sbjct: 157 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG 216

Query: 138 AKINSK 143
           AK++  
Sbjct: 217 AKLHPT 222

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 72.5 bits (178), Expect = 3e-16
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 21/126 (16%)

Query: 14  LFKAAETGDSSTFKSL-SKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL------- 65
           L  AA T   +  K L         +S R+    T+LH         V            
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE 211

Query: 66  ------SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
                  +  +  +    + +G  P+  AAS G + ++  +L +               H
Sbjct: 212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRH 264

Query: 120 YAASKG 125
            AA   
Sbjct: 265 AAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 11/82 (13%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLL-------SKGADVNLK-NDGGRTALHYA---AS 123
                     I  A +  N   +E LL        +  D   K  + G+T L  A     
Sbjct: 7   KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH 66

Query: 124 KGWLKIVELLISRGAKINSKDK 145
            G    + LL+    K +S  +
Sbjct: 67  NGQNDTIALLLDVARKTDSLKQ 88

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 28/106 (26%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSL--------------SLRNDDDRT 47
           D + +D      L    E  D++   +     +   +               + N    T
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235

Query: 48  LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN 93
            L +AAS G   V+  +L  +   +             H+AA   +
Sbjct: 236 PLALAASSGKIGVLAYILQRE--IH--------EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 7/52 (13%)

Query: 102 SKGADVNLKNDGGRTALHYAASKG-------WLKIVELLISRGAKINSKDKA 146
           S  A         R ++  A ++         L  ++    R      KD  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPE 52

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 89.7 bits (222), Expect = 3e-22
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              ++   HV+      EV +   +     N+   VDE G  P+H   SI N+ +V+ L+
Sbjct: 94  GSSNQQQQHVSFDSLLQEVNDAFPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 102 SKGADVNLKNDGGRTALHYAASKG----WLKIVELLISRGAKINSKDKACW--LHSIA 153
             G++    ++ G + L  A              LL      +  +D      LH I 
Sbjct: 152 KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII 209

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 81.6 bits (201), Expect = 3e-19
 Identities = 22/87 (25%), Positives = 41/87 (47%)

Query: 36  KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT 95
           + +    ++  +  +         ++E L      AN++NA D  G   ++ AA +GN++
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 297

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAA 122
           IV+ LL  GAD  + N  G   + + A
Sbjct: 298 IVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 78.9 bits (194), Expect = 2e-18
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSK--QQLLKSLSLRNDDDRTLLHVAASC----GHP 58
             D      L KA ++ ++    +       L   L L +  +RT+LH         G  
Sbjct: 159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 218

Query: 59  EVVEILLS------VDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK---GADVNL 109
              +  L       V +    + +   E  +  +        +I+E L  K      +N 
Sbjct: 219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 278

Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           ++  G T L+ AA  G + IV+ L+  GA     +K
Sbjct: 279 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 9/95 (9%), Positives = 28/95 (29%), Gaps = 1/95 (1%)

Query: 50  HVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL 109
           H   S      ++I+ ++       N    +  A +          +   L +  ++ N 
Sbjct: 32  HDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNS 91

Query: 110 KNDGGRTALHYAASKGWLK-IVELLISRGAKINSK 143
           +         + +    L+ + +   +    +N  
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIP 126

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 79.7 bits (196), Expect = 8e-19
 Identities = 21/98 (21%), Positives = 41/98 (41%)

Query: 37  SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTI 96
            L+  ++ D T LH+A        + I+  + +++  ++    +G   +H      N   
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220

Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           +++LL   A + + N+ G T L  A         ELL 
Sbjct: 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 78  DEEGWAPIHSAASIGN---VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
            E     +H A    +   + IV+ L+    +++ +   G TALHY       + ++LL+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 135 SRGAKINSKDKA 146
              A I   +++
Sbjct: 226 RGKASIEIANES 237

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 75.4 bits (185), Expect = 6e-17
 Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 11/155 (7%)

Query: 2   DMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH 57
             D    +   +       AAE G       L +    + +++   ++     +AA  GH
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175

Query: 58  PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA 117
             V+  L  +  +        E  +A   +A   G+  ++  LL     +          
Sbjct: 176 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI----- 230

Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKACWLHSI 152
             +    G   +   +     ++     A  L + 
Sbjct: 231 --HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNP 263

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 75.0 bits (184), Expect = 8e-17
 Identities = 17/142 (11%), Positives = 34/142 (23%), Gaps = 2/142 (1%)

Query: 5   IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
           I   + +          + S      K+ +   L    + ++    +     H       
Sbjct: 21  IPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQ 80

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK 124
           L     A+      E              +  + +LL+    V +       A   AA  
Sbjct: 81  LW--SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 138

Query: 125 GWLKIVELLISRGAKINSKDKA 146
           G L ++  L             
Sbjct: 139 GHLHVLNRLCELAPTEIMAMIQ 160

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.4 bits (154), Expect = 9e-13
 Identities = 10/97 (10%), Positives = 29/97 (29%), Gaps = 8/97 (8%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANV-----VNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +L          +++ +  +     +        +  +    +  A  +GN     +LL
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           S  + + L         +   + G L +  + +    
Sbjct: 340 SIPSVLALTKANN---YYINETGGRLDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.9 bits (150), Expect = 3e-12
 Identities = 11/121 (9%), Positives = 31/121 (25%), Gaps = 20/121 (16%)

Query: 33  QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG 92
             +     R  +      ++   G  ++V              +   +G+  + +     
Sbjct: 242 PFIARHVNRLKEMHDAFKLSNPDGVFDLVT------------KSECLQGFYMLRNLIRRN 289

Query: 93  NVTIVEML--------LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           +  +++ +        +   A            L  A   G      LL+S  + +    
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK 349

Query: 145 K 145
            
Sbjct: 350 A 350

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.5 bits (110), Expect = 7e-07
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 28  SLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           S+   + L   +    D   LL +A   G+     +LLS+     +  A         + 
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA------NNYYI 355

Query: 88  AASIGNVTIVEMLLSKGADVN 108
             + G + +  + L      +
Sbjct: 356 NETGGRLDLRAVALEHHHHHH 376

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 13/145 (8%), Positives = 30/145 (20%), Gaps = 38/145 (26%)

Query: 29  LSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88
                   +  ++ ++       A   GH  V+  LL       +  A            
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP--VMLAYAEIH--------E 232

Query: 89  ASIGNVTIVEMLLSKGADVNLKND--------------------GGRTALHYAASKGWLK 128
              G   +   +      +   +D                     G   L     +    
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 292

Query: 129 IVELL--------ISRGAKINSKDK 145
           +++ +        I   A   +   
Sbjct: 293 LLDDIRFLLSIPGIKALAPTATIPG 317

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 72.3 bits (177), Expect = 5e-16
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              +  +LH+A    +   + ++  + ++   ++A   +G   +H AA       +++LL
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
              A V   N+ G TAL  A  K   +  ELL    A+  
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEELL--EQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 78  DEEGWAPIHSAASIGNVT---IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
                  +H A  + N     +V+ ++  G  ++ K   G TALHYAA       ++LL+
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 135 SRGAKINSKDKA 146
              A + + ++A
Sbjct: 247 KGRALVGTVNEA 258

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           L  +  D  T LH AA    P+ +++LL     A  V  V+E G   +  A    +    
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLK--GRAL-VGTVNEAGETALDIARKKHHKECE 275

Query: 98  EML 100
           E+L
Sbjct: 276 ELL 278

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 70.2 bits (171), Expect = 4e-15
 Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 3/128 (2%)

Query: 6   DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
                      +       T           +      D+ T L  A +       E LL
Sbjct: 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL 255

Query: 66  SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG 125
              ++   VN  D  G  P+H A  +G+  +  + L +GAD+  ++  GR  L  A    
Sbjct: 256 ---QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312

Query: 126 WLKIVELL 133
              IV LL
Sbjct: 313 NADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 62.1 bits (150), Expect = 3e-12
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 1/105 (0%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                  L   +        +   L+     N VN   ++   P+  A +  ++   E L
Sbjct: 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNG-GQDNATPLIQATAANSLLACEFL 254

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA+VN  +  GR  LH+A   G   +  L + RGA + ++D 
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 59.5 bits (144), Expect = 3e-11
 Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASI---GNVTIV 97
            + + L     +     V+E   +  +    +   D        +H A  +    ++ +V
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
           + ++  G  ++ K   G TALHYAA       ++LL+   A + + ++A
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA 239

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 10/97 (10%)

Query: 42  NDDDRTLLHVA---ASCGHPEVVEILL--SVDESANVVNAVDEEGWAPIHSAASIGNVTI 96
              +  +LH+A   A+     +V+ ++          ++A   +G   +H AA       
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGH-----LDAKAADGNTALHYAALYNQPDC 222

Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +++LL   A V   N+ G TAL  A  K   +  ELL
Sbjct: 223 LKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.98
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.98
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.98
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.98
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.98
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.98
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.83
1gp8_A	40	Protein (scaffolding protein); coat protein-bindin	80.41

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.3e-35  Score=183.29  Aligned_cols=137  Identities=43%  Similarity=0.618  Sum_probs=125.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhc
Q 031607           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (156)
Q Consensus        12 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~   91 (156)
                      +.|+.|++.|+.++|+.|++.+  ++++.+|..|+||||+|+..++.+++++|++.+.+   ++.++..|.||||+|+..
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~G--advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad---~~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENG--ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc---hhhhccCCCCHHHHHHHc
Confidence            4789999999999999999987  78888999999999999999999999999988877   777888999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        92 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+|||+.
T Consensus        81 g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~  142 (169)
T 4gpm_A           81 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL  142 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999874

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-35  Score=194.87  Aligned_cols=148  Identities=30%  Similarity=0.369  Sum_probs=142.2

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      |+|..+..|.||||.|+..|+.+++++|++.+  .+++.++..|.||+++|+..++.+++++|++.+.+   ++.++..|
T Consensus        78 dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~--a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~---~n~~d~~g  152 (269)
T 4b93_B           78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKHG--ANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK---PNKKDLSG  152 (269)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTC
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC--CCcCccCCCCCCccccccccChHHHHHHHHHCCCC---CCCCCCCC
Confidence            68889999999999999999999999999988  78888999999999999999999999999999887   77889999


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      .||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||..
T Consensus       153 ~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  225 (269)
T 4b93_B          153 NTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA  225 (269)
T ss_dssp             CCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999975

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.1e-34  Score=180.18  Aligned_cols=136  Identities=38%  Similarity=0.556  Sum_probs=125.9

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      |+|..+..|.|||+.|+..++.++++.|++.+  .+++.++..|+||||+|+..|+.+++++|++.+.+   ++.++..|
T Consensus        29 dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g--ad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad---vn~~d~~G  103 (169)
T 4gpm_A           29 DVNASDSDGRTPLHHAAENGHKEVVKLLISKG--ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDG  103 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc--cchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCC---CCCCCCCC
Confidence            78999999999999999999999999999988  78899999999999999999999999999999988   78889999


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCc
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS  142 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~  142 (156)
                      +||||+|+..++.+++++|++.|++++.+|..|.|||++|+..|+.+++++|+++|++++-
T Consensus       104 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          104 RTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            9999999999999999999999999999999999999999999999999999999999864

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=9.3e-34  Score=180.62  Aligned_cols=146  Identities=25%  Similarity=0.280  Sum_probs=139.2

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      +|.++..|.||||.|+..|+.+++++|++.+  .+++..+..|+||||+|+..++.+++++|++.+.+   ++..+..|.
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~  102 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN---VNTKDFSGK  102 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTSC
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCC
Confidence            5678899999999999999999999999988  67888899999999999999999999999999877   777888999


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||++.
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  173 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS  173 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999975

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=4.8e-33  Score=173.37  Aligned_cols=145  Identities=33%  Similarity=0.389  Sum_probs=135.2

Q ss_pred             ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (156)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+..+.++|+.|++.|+.+.+++|++.+ +.+.+..+..|+||||+|+..++.+++++|++.+.+   ++.++..|.|||
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L   79 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD---VHAKDKGGLVPL   79 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC---CCccCCCCCCHH
Confidence            4677899999999999999999999975 467777788899999999999999999999999887   778888999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      |+|+..++.+++++|++.|++++.++..|.|||++|+..++.+++++|+++|++++.+|..|.||++..
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a  148 (165)
T 3twr_A           80 HNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV  148 (165)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGS
T ss_pred             HHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhH
Confidence            999999999999999999999999999999999999999999999999999999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1.4e-32  Score=171.62  Aligned_cols=140  Identities=25%  Similarity=0.284  Sum_probs=133.1

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (156)
                      .|.||||.|+..|+.+.+++|++.+  .+++.++..|+||||+|+..|+.+++++|++.+.+   ++..+..|.||||+|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A   76 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQE--NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD---PQLLGKGRESALSLA   76 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCcCCCCCcHHHHH
Confidence            4688999999999999999999987  67888999999999999999999999999999877   677788999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      +..++.+++++|++.|++++.++..|.|||++|+..++.+++++|+++|++++.++..|.||++.
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  141 (167)
T 3v31_A           77 CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL  141 (167)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999975

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1.8e-32  Score=171.44  Aligned_cols=143  Identities=38%  Similarity=0.509  Sum_probs=133.7

Q ss_pred             ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (156)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l   85 (156)
                      +...+.++++.|++.|+.+++++|++.+  .+++.++..|.||||+|+..|+.+++++|++.+.+   ++..+..|.|||
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L   84 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD---VNAVDHAGMTPL   84 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHH
Confidence            3456789999999999999999999987  78888999999999999999999999999999877   677888999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      |+|+..++.+++++|++.|++++.++..|.|||++|+..++.+++++|+++|++++.+|..|.||++.
T Consensus        85 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  152 (169)
T 2y1l_E           85 RLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI  152 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999974

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.2e-32  Score=177.82  Aligned_cols=148  Identities=26%  Similarity=0.297  Sum_probs=112.8

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      +++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++..+..|
T Consensus        65 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g  139 (231)
T 3aji_A           65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKG--AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYD  139 (231)
T ss_dssp             CSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCC
Confidence            45566666777777777777777777777766  56666677777777777777777777777776665   55667777


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      .||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++.+|..|.||++..
T Consensus       140 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  212 (231)
T 3aji_A          140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA  212 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHS
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888888887754

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=3.5e-32  Score=171.59  Aligned_cols=142  Identities=27%  Similarity=0.340  Sum_probs=132.3

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (156)
                      .+.++|+.|+..|+.+.+++|++.+ +.+++..+..|+||||+|+..++.+++++|++.+.+   ++.++..|.||||+|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR---INVMNRGDDTPLHLA   79 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCCHHHHH
Confidence            4678999999999999999999985 467888999999999999999999999999999877   777888999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      +..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||++..
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A  145 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA  145 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGS
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.5e-32  Score=180.10  Aligned_cols=152  Identities=27%  Similarity=0.309  Sum_probs=140.2

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccc---ccccccc
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESA---NVVNAVD   78 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~---~~~~~~~   78 (156)
                      ++|..+..|.||||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..++.+++++|+..+...   ...+..+
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  114 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  114 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccC
Confidence            57888899999999999999999999999987  788889999999999999999999999999987642   2245677


Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcC-CCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      ..|.||||+|+..++.+++++|++.|++++.++. .|.||||+|+..|+.+++++|+++|++++.+|..|.|||+...
T Consensus       115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  192 (236)
T 1ikn_D          115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW  192 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHH
Confidence            8899999999999999999999999999999997 8999999999999999999999999999999999999998753

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.9e-32  Score=176.53  Aligned_cols=147  Identities=26%  Similarity=0.279  Sum_probs=121.6

Q ss_pred             ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (156)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+..|.||||.|+..|+.+++++|++.+.+.+++..+..|.||||+|+..++.+++++|++.+.+   ++.++..|.|||
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L  144 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPL  144 (228)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC---ccccCCCCCCHH
Confidence            55677888888888888888888888764456777777888888888888888888888887766   667778888888


Q ss_pred             HHHHhcCCHHHHHHHHHcC-CCCccCcCCCCcHHHHHHHCCCHHHHHHHH-HcCCCCCcccccccccccCCC
Q 031607           86 HSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLI-SRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      |+|+..++.+++++|++.| .+++.++..|.|||++|+..++.+++++|+ ++|++++.+|..|.||++...
T Consensus       145 ~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred             HHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence            8888888888888888888 888888888888888888888888888888 788888888888888888653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=5.4e-32  Score=166.74  Aligned_cols=138  Identities=35%  Similarity=0.445  Sum_probs=129.3

Q ss_pred             CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHH
Q 031607           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (156)
Q Consensus        10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~   89 (156)
                      ..++|+.|++.|+.+.+++|++.+  .+++ .+..|.||||+|+..|+.+++++|++.+.+   ++.++..|.||||+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g--~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~   75 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS---RDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcC--CCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHH
Confidence            468999999999999999999998  3444 588899999999999999999999998877   6778889999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++.+|..|.||++.
T Consensus        76 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  139 (153)
T 1awc_B           76 SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDI  139 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999975

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.2e-32  Score=173.09  Aligned_cols=148  Identities=26%  Similarity=0.281  Sum_probs=136.5

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      +++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+...  ++..+..|
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~g  106 (201)
T 3hra_A           31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG--ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD--LNKHNRYG  106 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTS
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcc--cccccCCC
Confidence            67888899999999999999999999999987  788889999999999999999999999999654321  67788899


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcC-CCCccCcCCCCcHHHHHHHCCC-----HHHHHHHHHcCCCCCcccccccccccC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGW-----LKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .||||+|+..++.+++++|++.| .+++.++..|.||||+|+..+.     .+++++|+++|++++.+|..|.||||.
T Consensus       107 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  184 (201)
T 3hra_A          107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY  184 (201)
T ss_dssp             CCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHH
Confidence            99999999999999999999998 8999999999999999999998     899999999999999999999999985

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1e-31  Score=181.39  Aligned_cols=152  Identities=24%  Similarity=0.306  Sum_probs=137.6

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccc------
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVN------   75 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~------   75 (156)
                      |+|..+..|.||||.|+..|+.+++++|++.+  .+++..+..|+||||+|+..|+.+++++|++.+.+....+      
T Consensus        65 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  142 (299)
T 1s70_B           65 DINYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP  142 (299)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH
Confidence            67888899999999999999999999999987  7888899999999999999999999999999876532211      


Q ss_pred             ---------------------------------------------------cccCCCchHHHHHHhcCCHHHHHHHHHcC
Q 031607           76 ---------------------------------------------------AVDEEGWAPIHSAASIGNVTIVEMLLSKG  104 (156)
Q Consensus        76 ---------------------------------------------------~~~~~~~~~l~~a~~~~~~~~~~~l~~~~  104 (156)
                                                                         ..+..|.||||+|+..++.+++++|++.|
T Consensus       143 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  222 (299)
T 1s70_B          143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR  222 (299)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             HHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence                                                               02346889999999999999999999999


Q ss_pred             CCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607          105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus       105 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      ++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||++...
T Consensus       223 ~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~  273 (299)
T 1s70_B          223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD  273 (299)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999763

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=5.4e-32  Score=169.65  Aligned_cols=139  Identities=23%  Similarity=0.298  Sum_probs=91.1

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHh
Q 031607           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (156)
Q Consensus        11 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~   90 (156)
                      .+|||.|+..|+++.+++|++.+ ...++.++..|+||||+|+..|+.+++++|++.+.+   ++..+..|.||||+|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---PHILAKERESALSLAST   78 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---chhhcccCCCHHHHHHH
Confidence            35666666666666666666665 233555666666666666666666666666666655   45556666666666666


Q ss_pred             cCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.|||+.
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  141 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDL  141 (172)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            666666666666666666666666666666666666666666666666666666666666653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.3e-32  Score=182.21  Aligned_cols=114  Identities=28%  Similarity=0.335  Sum_probs=67.0

Q ss_pred             cCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccC-CCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcH
Q 031607           39 SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE-EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA  117 (156)
Q Consensus        39 ~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  117 (156)
                      +..+..|.||||+|+..|+.+++++|++.+.+   ++..+. .|.||||+|+..++.+++++|++.|++++.++..|.||
T Consensus       152 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp  228 (282)
T 1oy3_D          152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP  228 (282)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCH
Confidence            33444555555555555566666666655554   344443 36777777777777777777777777777777777777


Q ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607          118 LHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus       118 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      |++|+..++.+++++|+++|++++.+|..|.||++.+.
T Consensus       229 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~  266 (282)
T 1oy3_D          229 LGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG  266 (282)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTCCCCCCC-----------
T ss_pred             HHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence            77777777777777777777777777777777776543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.5e-32  Score=179.59  Aligned_cols=147  Identities=27%  Similarity=0.338  Sum_probs=94.5

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      ++..+..|.||||.|+..|+.+++++|++.+ ..+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|.
T Consensus        83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~  158 (253)
T 1yyh_A           83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGK  158 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHST-TSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC---TTCBCTTSC
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC---CCCcCCCCC
Confidence            4444555555555555555555555555544 124445555555566666655555666666555544   455566677


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ||||+|+..++.+++++|++.|++++.++..|.|||++|+..|+.+++++|+++|++++.+|..|.||++.
T Consensus       159 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~  229 (253)
T 1yyh_A          159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI  229 (253)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=5e-32  Score=169.79  Aligned_cols=143  Identities=22%  Similarity=0.268  Sum_probs=130.1

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      ++..+..|.||||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..++.+++++|++.+.+   ++.++..|.
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~  103 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEWG--ADPHILAKERESALSLASTGGYTDIVGLLLERDVD---INIYDWNGG  103 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCCCCCCC
Confidence            5777889999999999999999999999988  78888999999999999999999999999999887   777889999


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccc
Q 031607           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLH  150 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~  150 (156)
                      ||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++++++..++..|.||
T Consensus       104 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999887

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=100.00  E-value=8.2e-33  Score=170.98  Aligned_cols=145  Identities=21%  Similarity=0.250  Sum_probs=118.4

Q ss_pred             ccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCch
Q 031607            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (156)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~   83 (156)
                      +..+..+.++||.|+..|+.+++++|++.+  .+++.++..|+||||+|+ .++.+++++|++.+.+   ++.++..|.|
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~---~~~~d~~g~t   79 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE---PNCADPATLT   79 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC---CCCCCTTTCC
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC---CCCcCCCCCc
Confidence            455678999999999999999999999987  788889999999999985 8999999999999877   7788889999


Q ss_pred             -HHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           84 -PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        84 -~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                       |||+|+..++.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|++++.++..|.||...+
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           80 RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence             99999999999999999999999999999999999999999999999999999999999999999997643

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=2.3e-31  Score=173.88  Aligned_cols=149  Identities=21%  Similarity=0.198  Sum_probs=119.5

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhh---ccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccccc
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKS---LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD   78 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~---~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~   78 (156)
                      |++..+..|.||||.|+..|+.+++++|++.+....   .+.++..|.||||+|+..|+.+++++|++.+.+   ++..+
T Consensus        29 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~  105 (232)
T 2rfa_A           29 EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS---VSARA  105 (232)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCC
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCC---CCccc
Confidence            567778888888888888888888888888773211   155667888888888888888888888888776   33333


Q ss_pred             -------------CCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHH----HHHHHcCCCC-
Q 031607           79 -------------EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV----ELLISRGAKI-  140 (156)
Q Consensus        79 -------------~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~----~~Ll~~g~~~-  140 (156)
                                   ..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.+++    ++|+++|++. 
T Consensus       106 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             CSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             CCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence                         3688888888888888888888888888888888888888888888888877    8888888877 


Q ss_pred             -----CcccccccccccC
Q 031607          141 -----NSKDKACWLHSIA  153 (156)
Q Consensus       141 -----~~~~~~~~t~l~~  153 (156)
                           +.+|..|.||||.
T Consensus       186 ~~~~~~~~~~~g~tpl~~  203 (232)
T 2rfa_A          186 LKSLELVPNNQGLTPFKL  203 (232)
T ss_dssp             SCCGGGCCCTTSCCHHHH
T ss_pred             hhhhhccCCCCCCCHHHH
Confidence                 4788888888874

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.98  E-value=3e-32  Score=164.92  Aligned_cols=132  Identities=23%  Similarity=0.275  Sum_probs=126.0

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCC-
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-   80 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~-   80 (156)
                      |++..+..+.||||.|+..|+.+++++|++.+  .+++.++..|+||||+|+. ++.+++++|++.+.+   ++.++.. 
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~~   77 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAG--ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---PNCADPAT   77 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC---SSCCBTTT
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcC--CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC---CCCcCCCC
Confidence            68889999999999999999999999999987  7888899999999999999 999999999999887   7778888 


Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCC
Q 031607           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK  139 (156)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~  139 (156)
                      |.||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999985

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.98  E-value=1.5e-31  Score=174.61  Aligned_cols=146  Identities=32%  Similarity=0.358  Sum_probs=134.1

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      ++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..++.+++++|++.+.+   ++..+..|.
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~  107 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH---VNAVNQNGC  107 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSC
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC--CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC---CCCCCCCCC
Confidence            4566788999999999999999999999987  67888899999999999999999999999998877   677788999


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ||||+|+..++.+++++|++.|.+++.++..|.||+++|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus       108 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  178 (231)
T 3aji_A          108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL  178 (231)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.98  E-value=3.2e-31  Score=173.90  Aligned_cols=150  Identities=27%  Similarity=0.343  Sum_probs=103.2

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhh--hhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccccc-C
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL--KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-E   79 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~--~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~-~   79 (156)
                      ++..+..|.+|||.|+..|+.+++++|++.+..  .+++..+..|.||||+|+..++.+++++|++.+.+   ++..+ .
T Consensus        72 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~  148 (241)
T 1k1a_A           72 PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD---IDAVDIK  148 (241)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTT
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC---ccccccc
Confidence            344455555555555555555555555555411  13444555666666666666666666666666554   44444 5


Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus        80 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      .|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||++...
T Consensus       149 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  224 (241)
T 1k1a_A          149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  224 (241)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            6778888888888888888888888888888888888888888888888888888888888888888888887653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.98  E-value=2.3e-31  Score=174.37  Aligned_cols=147  Identities=32%  Similarity=0.453  Sum_probs=98.3

Q ss_pred             CCcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCC
Q 031607            1 MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (156)
Q Consensus         1 ~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (156)
                      +|++..+..|.||||.|+..|+.+++++|++++  .+++..+..|.||||+|+..|+.+++++|++.+..   ++..+..
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~   76 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL---VDPKDAE   76 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---CCCCCTT
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcC--CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCC
Confidence            456667777777777777777777777777766  56666677777777777777777777777766655   4445556


Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcC-CCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccccc
Q 031607           81 GWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSI  152 (156)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (156)
                      |.||||+|+..++.+++++|++.+ .+++.++..|.||+++|+..++.+++++|+++|++++.++..|.||||
T Consensus        77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  149 (237)
T 3b7b_A           77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLH  149 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHH
Confidence            666666666666666666666665 555555556666666666666666666666666666666666666655

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.98  E-value=2.1e-31  Score=173.08  Aligned_cols=142  Identities=25%  Similarity=0.314  Sum_probs=85.6

Q ss_pred             cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (156)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +..|.||||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..++.+++++|++.+...  .+..+..|.||||
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~   97 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPLI   97 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC--TTCCCTTCCCHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCcHHH
Confidence            455666666666666666666666665  455556666666666666666666666666554311  3444555556666


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccccc
Q 031607           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSI  152 (156)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (156)
                      +|+..++.+++++|++.|++++.++..|.|||++|+..++.+++++|+++|++++.+|..|.||||
T Consensus        98 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  163 (223)
T 2f8y_A           98 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF  163 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             HHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHH
Confidence            666666666666666555555555555556666666655566666666556555555555555554

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.98  E-value=1.1e-31  Score=179.70  Aligned_cols=149  Identities=25%  Similarity=0.312  Sum_probs=113.2

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccc-----------
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESA-----------   71 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~-----------   71 (156)
                      ++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..++.+++++|++.+...           
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ  115 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhc
Confidence            4555666667777777777777777777665  566666666777777777777777777776654321           


Q ss_pred             ---------------------------------cccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcC-CCCcH
Q 031607           72 ---------------------------------NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTA  117 (156)
Q Consensus        72 ---------------------------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~  117 (156)
                                                       ..++.++..|.||||+|+..++.+++++|++.|++++.++. .|.||
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tp  195 (282)
T 1oy3_D          116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP  195 (282)
T ss_dssp             ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred             ccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCH
Confidence                                             01334566788899999999999999999999998888875 48899


Q ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          118 LHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       118 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus       196 L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~  231 (282)
T 1oy3_D          196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS  231 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHH
Confidence            999999999999999999999999999999999875

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=1.5e-31  Score=174.77  Aligned_cols=144  Identities=28%  Similarity=0.310  Sum_probs=131.2

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc--cccccCCCchHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--VNAVDEEGWAPIH   86 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~--~~~~~~~~~~~l~   86 (156)
                      .|.||||.|++.|+.+++++|++.. +.+++.++..|+||||+|+..|+.+++++|++.+.....  .+..+..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            5889999999999999999999982 378889999999999999999999999999998876321  1456778999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCccCcC-------------CCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           87 SAASIGNVTIVEMLLSKGADVNLKND-------------GGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~~-------------~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      +|+..++.+++++|++.|++++.++.             .|.||||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  160 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI  160 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            99999999999999999999888765             69999999999999999999999999999999999999985

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.98  E-value=1.7e-31  Score=174.96  Aligned_cols=148  Identities=26%  Similarity=0.281  Sum_probs=103.1

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      ++..+..|.+||+.|+..|+.+++++|++.+ +.+++..+..|.||||+|+..++.+++++|++.+.+   ++.++..|.
T Consensus        70 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~  145 (237)
T 3b7b_A           70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG-QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD---INIRDNEEN  145 (237)
T ss_dssp             CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT-CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSC
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCccCCCCC
Confidence            4445555666666666666666666666654 234555566666666666666666666666666655   555666777


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      ||||+|+..++.+++++|++.|++++.++..|.|||++|+..++.+++++|+++|++++.+|..|.|||+..
T Consensus       146 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  217 (237)
T 3b7b_A          146 ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA  217 (237)
T ss_dssp             CHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHS
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            777777777777777777777777777777777788888777777777888777877777777787777653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.98  E-value=4.1e-31  Score=171.74  Aligned_cols=148  Identities=27%  Similarity=0.346  Sum_probs=139.4

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      +++..+..|.||||.|+..|+.+++++|++.+ ..+++..+..|.||||+|+..++.+++++|++.+.+   ++..+..|
T Consensus        50 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g  125 (223)
T 2f8y_A           50 DANIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLG  125 (223)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT-TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTS
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC---CcCcCCCC
Confidence            57778889999999999999999999999987 347788899999999999999999999999998877   77788899


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++.+|..|.||++.
T Consensus       126 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  197 (223)
T 2f8y_A          126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI  197 (223)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999874

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=8.4e-32  Score=184.33  Aligned_cols=149  Identities=18%  Similarity=0.133  Sum_probs=134.4

Q ss_pred             Cccc-ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCC---hHHHHHHHhhc-cccccccc
Q 031607            2 DMDI-DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH---PEVVEILLSVD-ESANVVNA   76 (156)
Q Consensus         2 ~~~~-~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~---~~~~~~ll~~~-~~~~~~~~   76 (156)
                      |+|. .+..|.||||.|+..|+.++|++|++++  ++++.++..|+||||+|+..|+   .++++.|++.+ .+   ++.
T Consensus       122 dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G--ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~---~~~  196 (327)
T 1sw6_A          122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC---LIL  196 (327)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG---GGE
T ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc---ccC
Confidence            6788 7899999999999999999999999998  7889999999999999999998   67777777765 33   678


Q ss_pred             ccCCCchHHHHHHh----cCCHHHHHHHHHcCC---------------------------------------------CC
Q 031607           77 VDEEGWAPIHSAAS----IGNVTIVEMLLSKGA---------------------------------------------DV  107 (156)
Q Consensus        77 ~~~~~~~~l~~a~~----~~~~~~~~~l~~~~~---------------------------------------------~~  107 (156)
                      ++..|.||||+|+.    .++.+++++|++.+.                                             ++
T Consensus       197 ~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~  276 (327)
T 1sw6_A          197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML  276 (327)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCC
Confidence            89999999999999    899999999987632                                             47


Q ss_pred             ccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607          108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus       108 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      +.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||...
T Consensus       277 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  324 (327)
T 1sw6_A          277 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  324 (327)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            788889999999999999999999999999999999999999999753

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=7.1e-31  Score=172.25  Aligned_cols=150  Identities=23%  Similarity=0.314  Sum_probs=122.7

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccc-ccccccCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN-VVNAVDEE   80 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~-~~~~~~~~   80 (156)
                      +++..+..|.||||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..++.+++++|++.+.... .++..+..
T Consensus        38 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  115 (241)
T 1k1a_A           38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG--ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD  115 (241)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTT
T ss_pred             CCCcccccCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcC
Confidence            46667777888888888888888888888876  6677777788888888888888888888887765210 15566778


Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCCCccCc-CCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      |.||||+|+..++.+++++|++.|++++.++ ..|.|||++|+..++.+++++|+++|++++.++..|.||||.
T Consensus       116 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  189 (241)
T 1k1a_A          116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS  189 (241)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            8889999998899999999998888888877 678899999999999999999999999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.3e-31  Score=166.29  Aligned_cols=139  Identities=30%  Similarity=0.413  Sum_probs=128.4

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (156)
                      ...++|+.|+..|+.+.+++|++.+  .+++.++..|+||||+|+. ++.+++++|++.+.+   ++.++..|.||||+|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN---PDLKDRTGFAVIHDA   77 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC---CCCCCCCCCCHHHHH
Confidence            4678999999999999999999987  6788889999999999999 999999999998877   677888999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCC-CCcccccccccccC
Q 031607           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKACWLHSIA  153 (156)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~  153 (156)
                      +..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++ ++.++..|.||||.
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~  143 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL  143 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHH
Confidence            999999999999999999999999999999999999999999999999998 68999999999975

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=2.1e-31  Score=176.39  Aligned_cols=144  Identities=25%  Similarity=0.307  Sum_probs=135.8

Q ss_pred             ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (156)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+..|.||||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..++.+++++|++.+...  ++..+..|.|||
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L  128 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPL  128 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC--TTCCCTTCCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--ccccCCCCCcHH
Confidence            4778999999999999999999999987  788889999999999999999999999999887621  677788999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      |+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus       129 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~  196 (253)
T 1yyh_A          129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL  196 (253)
T ss_dssp             HHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999985

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=5.6e-31  Score=171.54  Aligned_cols=148  Identities=26%  Similarity=0.300  Sum_probs=127.1

Q ss_pred             cccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccC-CCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCch
Q 031607            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (156)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~-~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~   83 (156)
                      ..+..|.||||.|+..|+.+++++|++.+...+++. .+..|+||||+|+..|+.+++++|++.+.... ++..+..|.|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t  109 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVT  109 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCC
Confidence            467788999999999999999999999874455555 77889999999999999999999998872211 6677888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC-CCCCcccccccccccC
Q 031607           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKACWLHSIA  153 (156)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~  153 (156)
                      |||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||.
T Consensus       110 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~  180 (228)
T 2dzn_A          110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH  180 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHH
T ss_pred             HHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999998 9999999999999874

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.2e-31  Score=179.61  Aligned_cols=147  Identities=22%  Similarity=0.280  Sum_probs=137.3

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHH-----HcCChHHHHHHHhhcccccccccc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAA-----SCGHPEVVEILLSVDESANVVNAV   77 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~-----~~~~~~~~~~ll~~~~~~~~~~~~   77 (156)
                      +|..+..|.||||.|+..|+.+++++|++.+ ..+++..+..|+||||+|+     ..++.+++++|+..+..   .+..
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~---~~~~  179 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSG-VCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI---NAKA  179 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTS-CCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT---TCCC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC---cccc
Confidence            6788999999999999999999999999988 2378889999999999999     56789999999998866   5667


Q ss_pred             cCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHH-cCCCCCcccccccccccC
Q 031607           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACWLHSIA  153 (156)
Q Consensus        78 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~  153 (156)
                      +..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||.
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~  256 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMV  256 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHH
Confidence            8889999999999999999999999999999999999999999999999999999999 899999999999999985

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.7e-31  Score=176.00  Aligned_cols=147  Identities=18%  Similarity=0.173  Sum_probs=132.5

Q ss_pred             Cccc----ccccCcHHHHHHHhc---CCHHHHHHHHHHHhhhhcc-----------CCCCCCchHHHHHHHcCChHHHHH
Q 031607            2 DMDI----DQTIKDKDLFKAAET---GDSSTFKSLSKQQLLKSLS-----------LRNDDDRTLLHVAASCGHPEVVEI   63 (156)
Q Consensus         2 ~~~~----~~~~~~~~l~~a~~~---~~~~~v~~ll~~~~~~~~~-----------~~~~~g~~~l~~A~~~~~~~~~~~   63 (156)
                      |++.    .+..|.||||.|+..   |+.+++++|++.+  .+.+           .+|..|.||||+|+..|+.+++++
T Consensus        31 ~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g--~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~  108 (256)
T 2etb_A           31 YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID--KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKL  108 (256)
T ss_dssp             CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH--HHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHH
T ss_pred             CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC--CcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHH
Confidence            4565    788999999999999   9999999999998  3333           234679999999999999999999


Q ss_pred             HHhhcccccccccccCC-------------CchHHHHHHhcCCHHHHHHHHH---cCCCCccCcCCCCcHHHHHHH--CC
Q 031607           64 LLSVDESANVVNAVDEE-------------GWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAAS--KG  125 (156)
Q Consensus        64 ll~~~~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~l~~a~~--~~  125 (156)
                      |++.+.+   ++.++..             |.||||+|+..++.+++++|++   .|++++.++..|.||||+|+.  .+
T Consensus       109 Ll~~ga~---~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~  185 (256)
T 2etb_A          109 LVENGAD---VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN  185 (256)
T ss_dssp             HHHTTCC---TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred             HHHcCCC---CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccC
Confidence            9999887   5555554             9999999999999999999999   999999999999999999999  78


Q ss_pred             CHH-------HHHHHHHcCCCC-------CcccccccccccC
Q 031607          126 WLK-------IVELLISRGAKI-------NSKDKACWLHSIA  153 (156)
Q Consensus       126 ~~~-------~~~~Ll~~g~~~-------~~~~~~~~t~l~~  153 (156)
                      +.+       ++++|+++|+++       +.+|..|.||||.
T Consensus       186 ~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~  227 (256)
T 2etb_A          186 SPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL  227 (256)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHH
T ss_pred             CchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHH
Confidence            888       999999999999       8999999999985

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=5.7e-31  Score=162.53  Aligned_cols=138  Identities=26%  Similarity=0.348  Sum_probs=130.1

Q ss_pred             CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHH
Q 031607           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (156)
Q Consensus        10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~   89 (156)
                      +.++|+.|+..|+.+.+++|++. .+.+++..+..|+||||+ +..|+.+++++|++.+.+   ++.++..|.||||+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~   76 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS---PNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHH
Confidence            46899999999999999999998 356888899999999999 999999999999999877   7778899999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ ++++.+|..|.|||+.
T Consensus        77 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~  139 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLEL  139 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHH
T ss_pred             HcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999 9999999999999975

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.6e-31  Score=174.65  Aligned_cols=146  Identities=23%  Similarity=0.289  Sum_probs=135.5

Q ss_pred             ccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCch
Q 031607            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (156)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~   83 (156)
                      +..+..+.++|+.|+..|+.+++++|++.+  .+++.++..|+||||+|+..|+.+++++|++.+.+   ++.++..|.|
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t   89 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSIVDFLITAGAN---VNSPDSHGWT   89 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCC
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCC
Confidence            345667889999999999999999999987  68888999999999999999999999999999887   7788899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccCc-CCCCcHHHHH--HHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           84 PIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYA--ASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      |||+|+..++.+++++|++.|++++.++ ..|.|||++|  +..++.+++++|+++|++++.+|..|.||++..
T Consensus        90 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~  163 (229)
T 2vge_A           90 PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY  163 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCB
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHH
Confidence            9999999999999999999999999986 5999999999  999999999999999999999999999998854

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=3.2e-30  Score=173.45  Aligned_cols=150  Identities=23%  Similarity=0.178  Sum_probs=99.8

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccc---------
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN---------   72 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~---------   72 (156)
                      |++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+..         
T Consensus        84 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L  161 (285)
T 3d9h_A           84 AVNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI  161 (285)
T ss_dssp             CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHH
T ss_pred             CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHH
Confidence            34455555555555555555555555555554  4444455555555555555555555555544433211         


Q ss_pred             --------------------ccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHH
Q 031607           73 --------------------VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL  132 (156)
Q Consensus        73 --------------------~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  132 (156)
                                          .++.++..|.||||+|+..++.+++++|++.|++++. +..|.|||++|+..++.+++++
T Consensus       162 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~  240 (285)
T 3d9h_A          162 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACL  240 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHH
Confidence                                0455667778888888888888888888888877774 6677888888888888888888


Q ss_pred             HHHcCCCCCcccccccccccCC
Q 031607          133 LISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       133 Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      |+++|++++.+|..|.|||+..
T Consensus       241 Ll~~gad~~~~d~~g~t~l~~A  262 (285)
T 3d9h_A          241 LMDFGADTQAKNAEGKRPVELV  262 (285)
T ss_dssp             HHHTTCCTTCCCTTSCCGGGGS
T ss_pred             HHHCCCCCCCcCCCCCCHHHHh
Confidence            8888888888888888888765

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=174.28  Aligned_cols=145  Identities=26%  Similarity=0.306  Sum_probs=128.4

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      ++.++..|.||||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..|+.+++++|++.+.+   ++.++..|.
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~  126 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ---VNGVTADWH  126 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT--CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SSCCCTTCC
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC---CCCCCCCCC
Confidence            4557788999999999999999999999987  67888899999999999999999999999999877   677788899


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      |||++|+..++.+++++|++.|++++..+ .|.|||++|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~  196 (285)
T 3d9h_A          127 TPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL  196 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHH
T ss_pred             CHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            99999999999999999999888877544 47888888888888888888888888888888888888874

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=1.9e-30  Score=183.50  Aligned_cols=147  Identities=31%  Similarity=0.397  Sum_probs=127.8

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      +++..+..|.|||+.|+..|+.+++++|++++  .+.+..+..|.||||+|+..|+.+++++|++.+..   ++.++..|
T Consensus       237 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g  311 (437)
T 1n11_A          237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMG  311 (437)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCSSC
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc---CCCCCCCC
Confidence            45666777888888888888888888888876  66777788888888888888888888888888776   67778889


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .||||+|+..++.+++++|++.|++++.++..|.|||++|+..|+.+++++|+++|++++.+|..|.||++.
T Consensus       312 ~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~  383 (437)
T 1n11_A          312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI  383 (437)
T ss_dssp             CCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=4.8e-30  Score=176.26  Aligned_cols=150  Identities=27%  Similarity=0.275  Sum_probs=94.7

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc--------
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--------   73 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~--------   73 (156)
                      |++..+..|.||||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..++.+++++|++.+.+...        
T Consensus        83 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~  160 (351)
T 3utm_A           83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHG--ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA  160 (351)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCccCCCCCcHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcc
Confidence            45555666666666666666666666666665  55556666666666666666666666666665443210        


Q ss_pred             -------------------------------------------------------------------------------c
Q 031607           74 -------------------------------------------------------------------------------V   74 (156)
Q Consensus        74 -------------------------------------------------------------------------------~   74 (156)
                                                                                                     +
T Consensus       161 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~  240 (351)
T 3utm_A          161 VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV  240 (351)
T ss_dssp             HHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT
T ss_pred             hHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc
Confidence                                                                                           2


Q ss_pred             ccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        75 ~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      +.++..|.||||+|+..++.+++++|++.|++++.++..|.|||++|+..|+.+++++|+++|++++.+|..|.||++.
T Consensus       241 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~  319 (351)
T 3utm_A          241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM  319 (351)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhh
Confidence            2344556666666666666666666666666666666666666666666666666666666666666666666666653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=1.9e-30  Score=179.75  Aligned_cols=149  Identities=19%  Similarity=0.221  Sum_probs=94.8

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc---------
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV---------   73 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~---------   73 (156)
                      .+..+..|.|+||.|+..|++++|++|++.+  .+++.++..|.||||+|+..|+.+++++|++.+.....         
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~   90 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHL   90 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHH
Confidence            4445555666666666666666666666655  45555566666666666666666666666655442111         


Q ss_pred             -----------------------ccc-----------------ccCCCchHHHHHHhcC--CHHHHHHHHHcCCCCccCc
Q 031607           74 -----------------------VNA-----------------VDEEGWAPIHSAASIG--NVTIVEMLLSKGADVNLKN  111 (156)
Q Consensus        74 -----------------------~~~-----------------~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~~~~~~~  111 (156)
                                             .+.                 .+..|.||||+|+..+  +.+++++|++.|++++.++
T Consensus        91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d  170 (364)
T 3ljn_A           91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD  170 (364)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC
T ss_pred             HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC
Confidence                                   111                 4556777777777777  7777777777777777777


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHcCCC-----CCcccccccccccC
Q 031607          112 DGGRTALHYAASKGWLKIVELLISRGAK-----INSKDKACWLHSIA  153 (156)
Q Consensus       112 ~~~~~~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~~~t~l~~  153 (156)
                      ..|.|||++|+..|+.+++++|+++|++     ++.++..|.||||.
T Consensus       171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~  217 (364)
T 3ljn_A          171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW  217 (364)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHH
Confidence            7777777777777777777777777776     77777777777764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=6.9e-30  Score=175.48  Aligned_cols=147  Identities=32%  Similarity=0.357  Sum_probs=125.0

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      +++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..|+.+++++|++.+.+   ++..+..|
T Consensus        50 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~---~~~~~~~g  124 (351)
T 3utm_A           50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---VNAMDLWQ  124 (351)
T ss_dssp             TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTC
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCC
Confidence            56778889999999999999999999999987  78888999999999999999999999999999877   67778889


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCC------------------------------------------------------
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADV------------------------------------------------------  107 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~------------------------------------------------------  107 (156)
                      .||||+|+..++.+++++|++.|+++                                                      
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN  204 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence            99999999988888888887765543                                                      


Q ss_pred             ------------------------------------ccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccc
Q 031607          108 ------------------------------------NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHS  151 (156)
Q Consensus       108 ------------------------------------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (156)
                                                          +.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus       205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L  284 (351)
T 3utm_A          205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL  284 (351)
T ss_dssp             CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence                                                34455677788888888888888888888888888888888887


Q ss_pred             cC
Q 031607          152 IA  153 (156)
Q Consensus       152 ~~  153 (156)
                      |.
T Consensus       285 ~~  286 (351)
T 3utm_A          285 HR  286 (351)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.97  E-value=1.3e-29  Score=151.00  Aligned_cols=126  Identities=41%  Similarity=0.606  Sum_probs=119.5

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (156)
                      .|.|+|+.|+..|+.+++++|++.+  .+++..+..|.||||+|+..++.+++++|++.+.+   ++.++..|.||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCcHHHHH
Confidence            4789999999999999999999987  67888899999999999999999999999998877   677888999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCC
Q 031607           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK  139 (156)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~  139 (156)
                      +..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++
T Consensus        76 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           76 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999999985

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.1e-30  Score=171.73  Aligned_cols=143  Identities=23%  Similarity=0.278  Sum_probs=125.9

Q ss_pred             cCcHHHHHHHhcCCHHHH----HHHHHHHhhhhccC----CCCCCchHHHHHHHc---CChHHHHHHHhhcccccccc--
Q 031607            9 IKDKDLFKAAETGDSSTF----KSLSKQQLLKSLSL----RNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVN--   75 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v----~~ll~~~~~~~~~~----~~~~g~~~l~~A~~~---~~~~~~~~ll~~~~~~~~~~--   75 (156)
                      +|.|+||.|+..|+.+.|    ++|++.+  .+++.    ++..|+||||+|+..   |+.+++++|++.+.......  
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g--~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS--KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcC--CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            588999999999999855    5555565  67776    799999999999999   99999999999877632111  


Q ss_pred             ------cccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCC-------------CCcHHHHHHHCCCHHHHHHHHH-
Q 031607           76 ------AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLIS-  135 (156)
Q Consensus        76 ------~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~Ll~-  135 (156)
                            ..+..|.||||+|+..++.+++++|++.|++++.++..             |.||||+|+..|+.+++++|++ 
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                  23467999999999999999999999999999998876             9999999999999999999999 


Q ss_pred             --cCCCCCcccccccccccC
Q 031607          136 --RGAKINSKDKACWLHSIA  153 (156)
Q Consensus       136 --~g~~~~~~~~~~~t~l~~  153 (156)
                        +|++++.+|..|+||||.
T Consensus       159 ~~~ga~~n~~d~~g~TpLh~  178 (256)
T 2etb_A          159 PHQPASLEATDSLGNTVLHA  178 (256)
T ss_dssp             SSCCCCTTCCCTTSCCHHHH
T ss_pred             cccCCCcCccCCCCCCHHHH
Confidence              999999999999999985

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=1.7e-30  Score=180.00  Aligned_cols=110  Identities=20%  Similarity=0.342  Sum_probs=100.8

Q ss_pred             CCCCCchHHHHHHHcC--ChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCC-----CccCcCC
Q 031607           41 RNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD-----VNLKNDG  113 (156)
Q Consensus        41 ~~~~g~~~l~~A~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~-----~~~~~~~  113 (156)
                      .+..|.||||+|+..|  +.+++++|++.+.+   ++.++..|.||||+|+..++.+++++|++.|++     ++.++..
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~  210 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGAS---PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ  210 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC
Confidence            5667899999999999  89999999998877   677888999999999999999999999999888     8999999


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          114 GRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       114 ~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus       211 g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~  250 (364)
T 3ljn_A          211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYL  250 (364)
T ss_dssp             CCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            9999999999999999999999999999999999999975

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=5.1e-30  Score=164.14  Aligned_cols=143  Identities=23%  Similarity=0.300  Sum_probs=132.8

Q ss_pred             cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (156)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +..+.++|+.|+..|+.+.+++++..+ +.+++..+..|+||||+|+..|+.+++++|++.+.+   ++..+..|.||||
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~   77 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD---INLQNSISDSPYL   77 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHH
Confidence            356889999999999999999999987 357888999999999999999999999999999887   6778889999999


Q ss_pred             HHHhcCCHHHHHHHHH-cCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC-CCCCcccccccccccC
Q 031607           87 SAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKACWLHSIA  153 (156)
Q Consensus        87 ~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~  153 (156)
                      +|+..++.+++++|++ .+.+++.++..|.|||++|+..++.+++++|+++| ++++.++..|.||||.
T Consensus        78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~  146 (201)
T 3hra_A           78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE  146 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHH
T ss_pred             HHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHH
Confidence            9999999999999994 57789999999999999999999999999999999 9999999999999985

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.97  E-value=7.5e-30  Score=154.31  Aligned_cols=127  Identities=34%  Similarity=0.494  Sum_probs=118.2

Q ss_pred             ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (156)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l   85 (156)
                      ....+.++||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..++.+++++|++.+.+   ++.++..|.|||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L   84 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD---VNAVDAIGFTPL   84 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHH
Confidence            3456899999999999999999999987  78888999999999999999999999999999877   777888999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC
Q 031607           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (156)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g  137 (156)
                      |+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|
T Consensus        85 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           85 HLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999876

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.3e-30  Score=173.06  Aligned_cols=143  Identities=24%  Similarity=0.202  Sum_probs=128.4

Q ss_pred             ccCcHHHHHHH---hcCCHHHHHHHHHHHhh---------hhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccc
Q 031607            8 TIKDKDLFKAA---ETGDSSTFKSLSKQQLL---------KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVN   75 (156)
Q Consensus         8 ~~~~~~l~~a~---~~~~~~~v~~ll~~~~~---------~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~   75 (156)
                      ..|.||||.|+   ..|+.+++++|++.+..         ..+...+..|+||||+|+..|+.+++++|++.+.+   ++
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~  120 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD---VH  120 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC---TT
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC---cC
Confidence            66999999999   77999999999998732         22444566899999999999999999999999887   55


Q ss_pred             ccc--------------CCCchHHHHHHhcCCHHHHHHHHH---cCCCCccCcCCCCcHHHHHHHCCC---------HHH
Q 031607           76 AVD--------------EEGWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAASKGW---------LKI  129 (156)
Q Consensus        76 ~~~--------------~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~l~~a~~~~~---------~~~  129 (156)
                      ..+              ..|.||||+|+..++.+++++|++   .|++++.+|..|.||||+|+..++         .++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~  200 (260)
T 3jxi_A          121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM  200 (260)
T ss_dssp             CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred             ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence            555              579999999999999999999999   899999999999999999998877         799


Q ss_pred             HHHHHHcCCCC-------CcccccccccccC
Q 031607          130 VELLISRGAKI-------NSKDKACWLHSIA  153 (156)
Q Consensus       130 ~~~Ll~~g~~~-------~~~~~~~~t~l~~  153 (156)
                      +++|+++|+++       +.+|..|.||||.
T Consensus       201 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~  231 (260)
T 3jxi_A          201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMM  231 (260)
T ss_dssp             HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred             HHHHHHhCcccccccchhhcccCCCCCHHHH
Confidence            99999999999       6799999999985

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=3e-30  Score=173.60  Aligned_cols=144  Identities=17%  Similarity=0.135  Sum_probs=104.1

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      +++..+..|.||||.|+..|+.+++++|++.+  .+++..  +|+||||+|+..|+.+++++|++.+.+   ++.++..|
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g   95 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAG--ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLD---DSQFDDKG   95 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCC
Confidence            46677778888888888888888888888876  555554  377888888888888888888877766   55667777


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCC-CcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG-RTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .||||+|+..++.+++++|++.|++++.++..| .|||++|+..|+.+++++|+++|++.... ..|.||||.
T Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~  167 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHI  167 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHH
Confidence            788888887778888887777777777777766 57777777776666666666666655222 266666653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=5.5e-30  Score=158.93  Aligned_cols=132  Identities=27%  Similarity=0.376  Sum_probs=123.0

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      +++..+..|.||||.|+. |+.+++++|++.+  .+++.++..|+||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        30 ~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g  103 (162)
T 1ihb_A           30 NVNAQNGFGRTALQVMKL-GNPEIARRLLLRG--ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD---VNIEDNEG  103 (162)
T ss_dssp             CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CccccCccCccHHHHHHc-CcHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCC
Confidence            577888999999999999 9999999999987  78888999999999999999999999999999877   77888999


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCC-CccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGAD-VNLKNDGGRTALHYAASKGWLKIVELLISRGAK  139 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~  139 (156)
                      .||||+|+..++.+++++|++.|++ ++.++..|.||+++|+..++.+++++|+++|++
T Consensus       104 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999999987 589999999999999999999999999999985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=2e-29  Score=157.64  Aligned_cols=131  Identities=34%  Similarity=0.446  Sum_probs=123.8

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      |+|..+..|.|+||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g  113 (169)
T 2y1l_E           39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG--ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEG  113 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCC
Confidence            67888899999999999999999999999987  78888999999999999999999999999999887   77788899


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g  137 (156)
                      .||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|++.|
T Consensus       114 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=3.7e-30  Score=162.33  Aligned_cols=141  Identities=28%  Similarity=0.315  Sum_probs=132.6

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      +++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g  105 (179)
T 3f6q_A           31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRG--ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD---INAVNEHG  105 (179)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             cccccCCCCCCHHHHHHHcCcHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCC
Confidence            57788899999999999999999999999997  78888999999999999999999999999999887   77888999


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccc
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC  147 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~  147 (156)
                      .||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++..+..+
T Consensus       106 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          106 NVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            999999999999999999999999999999999999999999999999999999999998766443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=173.62  Aligned_cols=146  Identities=24%  Similarity=0.344  Sum_probs=112.3

Q ss_pred             cccccccCcHHHHHHHhcCCHH-HHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            3 MDIDQTIKDKDLFKAAETGDSS-TFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~-~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      ++..+..+.+||+.|+..+..+ .++.|++.+  .+++.+|.+|+||||+|+..|+.+++++|+..+.+   ++..+..|
T Consensus        45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~---~~~~~~~g  119 (269)
T 4b93_B           45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASG--LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN---AGARNADQ  119 (269)
T ss_dssp             ------------------------------CC--CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC---TTCCCTTC
T ss_pred             ccccCccCCCHHHHHHHhCCHHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC---cCccCCCC
Confidence            3455677899999999988765 678888887  78899999999999999999999999999999887   67788899


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .||++.|+..++.+++++|++.|++++.+|..|.|||++|+..|+.+++++|+++|++++.++..|.||||.
T Consensus       120 ~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~  191 (269)
T 4b93_B          120 AVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHE  191 (269)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred             CCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999985

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=8.6e-30  Score=180.10  Aligned_cols=146  Identities=30%  Similarity=0.354  Sum_probs=86.7

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      +++..+..|.||||.|+..|++++|++|++++  .+++.++..|.||||+|+..|+.+++++|++.+.+   ++.++..|
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g   80 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRG--ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---VNAKAKDD   80 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTT--CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC---SSCCCTTS
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCC
Confidence            34555666666666666666666666666665  45556666666666666666666666666666555   45555666


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccccc
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSI  152 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (156)
                      .||||+|+..|+.+++++|++.|++++.++..|.|||++|+..|+.+++++|++++++.+..+..|.||||
T Consensus        81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~  151 (437)
T 1n11_A           81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH  151 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHH
Confidence            66666666666666666666666666666655666666666666666656655555555555555555554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=7.9e-30  Score=170.42  Aligned_cols=145  Identities=22%  Similarity=0.245  Sum_probs=128.9

Q ss_pred             ccccCcHHHHHHHhc---CCHHHHHHHHHHHhhh-----hccC----CCCCCchHHHHHHHcCChHHHHHHHhhcccccc
Q 031607            6 DQTIKDKDLFKAAET---GDSSTFKSLSKQQLLK-----SLSL----RNDDDRTLLHVAASCGHPEVVEILLSVDESANV   73 (156)
Q Consensus         6 ~~~~~~~~l~~a~~~---~~~~~v~~ll~~~~~~-----~~~~----~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~   73 (156)
                      .+..|.||||.|+..   |+.+++++|++.+...     .++.    .+..|+||||+|+..|+.+++++|++.+.+   
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~---  126 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD---  126 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC---
Confidence            467899999999987   9999999999997321     0222    567899999999999999999999999887   


Q ss_pred             cccccC--------------CCchHHHHHHhcCCHHHHHHHHH---cCCCCccCcCCCCcHHHHHHHCCC---------H
Q 031607           74 VNAVDE--------------EGWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAASKGW---------L  127 (156)
Q Consensus        74 ~~~~~~--------------~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~l~~a~~~~~---------~  127 (156)
                      ++.++.              .|.||||+|+..++.+++++|++   .|++++.++..|.||||+|+..++         .
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~  206 (273)
T 2pnn_A          127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT  206 (273)
T ss_dssp             TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred             cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHH
Confidence            555554              79999999999999999999999   899999999999999999999888         7


Q ss_pred             HHHHHHHHcCCCCC-------cccccccccccC
Q 031607          128 KIVELLISRGAKIN-------SKDKACWLHSIA  153 (156)
Q Consensus       128 ~~~~~Ll~~g~~~~-------~~~~~~~t~l~~  153 (156)
                      +++++|+++|++++       .+|..|+||||.
T Consensus       207 ~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~  239 (273)
T 2pnn_A          207 SMYNEILILGAKLHPTLKLEEITNRKGLTPLAL  239 (273)
T ss_dssp             HHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred             HHHHHHHHhhhhcccccccccccCCCCCCHHHH
Confidence            99999999999997       499999999985

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=3.3e-30  Score=169.40  Aligned_cols=142  Identities=20%  Similarity=0.220  Sum_probs=96.9

Q ss_pred             cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (156)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ...|.|||+.|++.++.+.++.|++++  .+++. +..|.||||+|+..|+.+++++|++.+.+   ++.++..|.||||
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g--~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~t~L~   75 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHG--MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD---PSLPNDEGITALH   75 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS---CCCCCTTSCCHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccC--CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHH
Confidence            456889999999999999999999988  45554 46789999999999999999999988876   6778889999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccc-ccccCC
Q 031607           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW-LHSIAP  154 (156)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~-t~l~~~  154 (156)
                      +|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|. ||||..
T Consensus        76 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B           76 NAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC  144 (239)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998877 998865

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=1.4e-29  Score=170.96  Aligned_cols=141  Identities=34%  Similarity=0.503  Sum_probs=129.9

Q ss_pred             ccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHH
Q 031607            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (156)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~   87 (156)
                      ..+.++|+.|+..|+++.|++|++.+  .+++..+..|.||||+||..|+.+++++|++.+.+   ++..+..|.||||+
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~  112 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLHA  112 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHH
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHH
Confidence            45789999999999999999999988  77888899999999999999999999999999887   77788899999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccCcC-------------------------------------------------------
Q 031607           88 AASIGNVTIVEMLLSKGADVNLKND-------------------------------------------------------  112 (156)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~~~~-------------------------------------------------------  112 (156)
                      |+..++.+++++|++.|++++.++.                                                       
T Consensus       113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            9999999999999999988766543                                                       


Q ss_pred             -----CCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          113 -----GGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       113 -----~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                           .|.||||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~  238 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHA  238 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred             hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence                 46788999999999999999999999999999999999985

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=2e-29  Score=157.21  Aligned_cols=135  Identities=24%  Similarity=0.306  Sum_probs=127.0

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      +++..+..|.||||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g  102 (167)
T 3v31_A           28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG--ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD---VNEYDWNG  102 (167)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTS
T ss_pred             CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---CCcCCCCC
Confidence            56788899999999999999999999999987  78888899999999999999999999999999887   77788999


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN  141 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~  141 (156)
                      .||||+|+..++.+++++|++.|++++.++..|.||+++|+..|+.+++++|++++.++.
T Consensus       103 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999876654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=4.4e-29  Score=163.36  Aligned_cols=148  Identities=24%  Similarity=0.293  Sum_probs=131.6

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      |++..+..+.++|+.|+..|+.+.+++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+...  ....+..|
T Consensus         1 h~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~~   76 (240)
T 3eu9_A            1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV--DQLGGDLN   76 (240)
T ss_dssp             -CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCBTTTT
T ss_pred             CccccccccchHHHHHHHcCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc--hhhcCCcC
Confidence            45667788999999999999999999999987  678888899999999999999999999999988763  22344568


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .|||++|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++.++..|.||||.
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  148 (240)
T 3eu9_A           77 STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW  148 (240)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=1.8e-29  Score=165.44  Aligned_cols=150  Identities=23%  Similarity=0.224  Sum_probs=136.8

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhh----hhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccc
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL----KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAV   77 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~----~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~   77 (156)
                      |++..+..|.||||.|+..|+.+++++|++.+..    ..++..+..|.||||+|+..|+.+++++|++.+.+   ++.+
T Consensus        70 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~  146 (236)
T 1ikn_D           70 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQ  146 (236)
T ss_dssp             CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCC
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCC
Confidence            5778889999999999999999999999998731    22567788999999999999999999999999887   6777


Q ss_pred             cC-CCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCC--cccccccccccCC
Q 031607           78 DE-EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN--SKDKACWLHSIAP  154 (156)
Q Consensus        78 ~~-~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~--~~~~~~~t~l~~~  154 (156)
                      +. .|.||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++..  .++..+.||....
T Consensus       147 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhh
Confidence            76 89999999999999999999999999999999999999999999999999999999999876  8889999987653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=9.5e-30  Score=170.03  Aligned_cols=151  Identities=24%  Similarity=0.292  Sum_probs=127.9

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhh--hhcc----CCCCCCchHHHHHHHc---CChHHHHHHHhhcccccc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL--KSLS----LRNDDDRTLLHVAASC---GHPEVVEILLSVDESANV   73 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~--~~~~----~~~~~g~~~l~~A~~~---~~~~~~~~ll~~~~~~~~   73 (156)
                      .+..+..|.++||.|++.|++++|+.|++.+..  .+++    ..+..|+||||+|+..   |+.+++++|++.+.....
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            345678899999999999999999999987532  2222    3478999999999987   999999999998754211


Q ss_pred             --------cccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcC--------------CCCcHHHHHHHCCCHHHHH
Q 031607           74 --------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND--------------GGRTALHYAASKGWLKIVE  131 (156)
Q Consensus        74 --------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~  131 (156)
                              ....+..|.||||+|+..++.+++++|++.|++++.++.              .|.||||+|+..|+.++++
T Consensus        86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (273)
T 2pnn_A           86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK  165 (273)
T ss_dssp             HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred             hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence                    122566899999999999999999999999999999887              7999999999999999999


Q ss_pred             HHHH---cCCCCCcccccccccccC
Q 031607          132 LLIS---RGAKINSKDKACWLHSIA  153 (156)
Q Consensus       132 ~Ll~---~g~~~~~~~~~~~t~l~~  153 (156)
                      +|++   +|++++.+|..|+||||.
T Consensus       166 ~Ll~~~~~gad~~~~d~~g~tpLh~  190 (273)
T 2pnn_A          166 FLLQNSWQPADISARDSVGNTVLHA  190 (273)
T ss_dssp             HHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred             HHHhcccCCCCceeeCCCCCcHHHH
Confidence            9999   999999999999999985

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=6.4e-29  Score=166.22  Aligned_cols=141  Identities=28%  Similarity=0.401  Sum_probs=79.3

Q ss_pred             cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (156)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +..|.||||.|+..|+.+++++|++.+  .+++.++..|.||||+|+..|+.+++++|++.+.+   ++..+..|.|||+
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~  110 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFM  110 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTCCBHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCcccCCHHH
Confidence            444556666666666666666666655  44555555566666666666666666666655544   4444555555555


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCccC----------cCCCCcHHHHHHHCCCHHHHHHHHHc-CCCCCccccccccccc
Q 031607           87 SAASIGNVTIVEMLLSKGADVNLK----------NDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKACWLHSI  152 (156)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~  152 (156)
                      +|+..++.+++++|++.|++++.+          +..|.|||++|+..++.+++++|+++ |++++.++..|.||||
T Consensus       111 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~  187 (285)
T 1wdy_A          111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI  187 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH
T ss_pred             HHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHH
Confidence            555555555555555555555444          34455555555555555555555554 5555555555555554

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=6.7e-29  Score=158.09  Aligned_cols=131  Identities=21%  Similarity=0.239  Sum_probs=124.1

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      +++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g  134 (192)
T 2rfm_A           60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG--SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEG  134 (192)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTC
T ss_pred             ccccccccCccHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCC
Confidence            56778889999999999999999999999998  78888999999999999999999999999999887   77888999


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g  137 (156)
                      .||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|
T Consensus       135 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999865

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=6.3e-30  Score=172.06  Aligned_cols=139  Identities=18%  Similarity=0.158  Sum_probs=116.4

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC-chHHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIHS   87 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~~~l~~   87 (156)
                      .|.||||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..|+.+++++|++.+.+   ++..+..| .||||+
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~~t~L~~  135 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFSG--LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYH  135 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG---GGGCSSSGGGSHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCccCCCCCCCHHHH
Confidence            5788999999999999999998887  67778888889999999999999999999888777   66777778 789999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccc-ccC
Q 031607           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLH-SIA  153 (156)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~-l~~  153 (156)
                      |+..++.+++++|++.|.+.... ..|.||||+|+..|+.+++++|+++|++++.++..|.|| ||.
T Consensus       136 A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~  201 (285)
T 3kea_A          136 AVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKL  201 (285)
T ss_dssp             HHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHH
T ss_pred             HHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHH
Confidence            98888999999888887765322 267888999998888899999988888888888888887 663

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=1.4e-28  Score=164.62  Aligned_cols=144  Identities=31%  Similarity=0.364  Sum_probs=75.6

Q ss_pred             ccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCC----------CCCCchHHHHHHHcCChHHHHHHHhh-ccccc
Q 031607            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLR----------NDDDRTLLHVAASCGHPEVVEILLSV-DESAN   72 (156)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~----------~~~g~~~l~~A~~~~~~~~~~~ll~~-~~~~~   72 (156)
                      +..+..|.|||+.|+..|+.+++++|++.+  .+++..          +..|.||||+|+..++.+++++|++. +.+  
T Consensus        99 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--  174 (285)
T 1wdy_A           99 NECDFYGFTAFMEAAVYGKVKALKFLYKRG--ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD--  174 (285)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC--
T ss_pred             CccCcccCCHHHHHHHhCCHHHHHHHHHhC--CCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC--
Confidence            333444444444444444444444444443  222222          33444455555555555555555443 333  


Q ss_pred             ccccccCCCchHHHHHHhcCC----HHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHH-cCCCCCcccccc
Q 031607           73 VVNAVDEEGWAPIHSAASIGN----VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKAC  147 (156)
Q Consensus        73 ~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~  147 (156)
                       ++..+..|.||+|+|+..++    .+++++|++.|++++.++..|.||||+|+..++.+++++|++ .|++++.+|..|
T Consensus       175 -~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g  253 (285)
T 1wdy_A          175 -VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG  253 (285)
T ss_dssp             -TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTS
T ss_pred             -CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCC
Confidence             34445555555555555555    555555555555555555566666666666666666666666 566666666666


Q ss_pred             ccccc
Q 031607          148 WLHSI  152 (156)
Q Consensus       148 ~t~l~  152 (156)
                      .||||
T Consensus       254 ~t~l~  258 (285)
T 1wdy_A          254 KTALL  258 (285)
T ss_dssp             CCHHH
T ss_pred             CcHHH
Confidence            66655

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=5.2e-29  Score=173.20  Aligned_cols=149  Identities=19%  Similarity=0.275  Sum_probs=98.0

Q ss_pred             cccccCcHHHHHHHhcCCHHHHHHHHHHHh-hhhccCCCCCCchHHHHHHHcC---ChHHHHHHHhhcccccc-----cc
Q 031607            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQL-LKSLSLRNDDDRTLLHVAASCG---HPEVVEILLSVDESANV-----VN   75 (156)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~-~~~~~~~~~~g~~~l~~A~~~~---~~~~~~~ll~~~~~~~~-----~~   75 (156)
                      ..+..|.||||.|+..|+.+++++|++.+. ..+++..+..|.||||+|+..+   +.+++++|++.+.+...     .+
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  273 (373)
T 2fo1_E          194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  273 (373)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccC
Confidence            333344444444444444444444444320 1344444555555555555554   45555555555544221     11


Q ss_pred             cccCCCchHHHHHHhcCCHHHHHHHHHcC-CCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           76 AVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        76 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ..+..|.||||+|+..++.+++++|++.+ ++++.++..|.|||++|+..|+.+++++|+++|++++.+|..|.|||+.
T Consensus       274 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~  352 (373)
T 2fo1_E          274 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL  352 (373)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHH
T ss_pred             cccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHH
Confidence            24557888888888888888888888775 8888888888899999999999999999999999999999999998874

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=3e-29  Score=174.43  Aligned_cols=150  Identities=23%  Similarity=0.290  Sum_probs=136.3

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      |+|..+..|.||||.|+..|+.++|++|++.+  ++++.++..|.||||+|+..|+.+++++|++.+.....++..+..|
T Consensus       158 ~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g--a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g  235 (373)
T 2fo1_E          158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAG--ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  235 (373)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCC--CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCC
Confidence            67888999999999999999999999999988  7888999999999999999999999999998762111267788999


Q ss_pred             chHHHHHHhcC---CHHHHHHHHHcCCCCcc--------CcCCCCcHHHHHHHCCCHHHHHHHHHcC-CCCCcccccccc
Q 031607           82 WAPIHSAASIG---NVTIVEMLLSKGADVNL--------KNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKACWL  149 (156)
Q Consensus        82 ~~~l~~a~~~~---~~~~~~~l~~~~~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t  149 (156)
                      .|+||+|+..+   +.+++++|++.|++++.        ++..|.||||+|+..|+.+++++|++++ ++++.+|..|.|
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~T  315 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT  315 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCC
Confidence            99999999987   89999999999998876        5668999999999999999999999886 999999999999


Q ss_pred             cccC
Q 031607          150 HSIA  153 (156)
Q Consensus       150 ~l~~  153 (156)
                      |||.
T Consensus       316 pL~~  319 (373)
T 2fo1_E          316 PIML  319 (373)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9985

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=3.6e-29  Score=155.79  Aligned_cols=131  Identities=30%  Similarity=0.351  Sum_probs=120.5

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      +++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g  108 (165)
T 3twr_A           34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV---VNVADLWK  108 (165)
T ss_dssp             TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTC
T ss_pred             CccccccCCCCHHHHHHHcChHHHHHHHHhcC--CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC---CCCcCCCC
Confidence            35566677889999999999999999999988  78888999999999999999999999999999887   77788999


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA  138 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~  138 (156)
                      .||||+|+..++.+++++|++.|++++.++..|.||+++|.. ++.+++++|+++|+
T Consensus       109 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          109 FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            999999999999999999999999999999999999999877 89999999999885

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.7e-29  Score=165.99  Aligned_cols=145  Identities=26%  Similarity=0.294  Sum_probs=125.6

Q ss_pred             cccCcHHHHHHHhcCCHHHHHHHHH----HHhhhhccCCC----CCCchHHHHHH---HcCChHHHHHHHhhcccccc--
Q 031607            7 QTIKDKDLFKAAETGDSSTFKSLSK----QQLLKSLSLRN----DDDRTLLHVAA---SCGHPEVVEILLSVDESANV--   73 (156)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~v~~ll~----~~~~~~~~~~~----~~g~~~l~~A~---~~~~~~~~~~ll~~~~~~~~--   73 (156)
                      +.++.++||.|++.|+.+.++.|++    .+  .+++..+    ..|+||||+|+   ..|+.+++++|++.+.....  
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~--~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHK--KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence            4678999999999999997777766    54  4555443    67999999999   67999999999998754211  


Q ss_pred             ------cccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCc--------------CCCCcHHHHHHHCCCHHHHHHH
Q 031607           74 ------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN--------------DGGRTALHYAASKGWLKIVELL  133 (156)
Q Consensus        74 ------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~L  133 (156)
                            ....+..|.||||+|+..++.+++++|++.|++++.++              ..|.||||+|+..|+.+++++|
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  159 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL  159 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence                  33445689999999999999999999999999999988              5799999999999999999999


Q ss_pred             HH---cCCCCCcccccccccccC
Q 031607          134 IS---RGAKINSKDKACWLHSIA  153 (156)
Q Consensus       134 l~---~g~~~~~~~~~~~t~l~~  153 (156)
                      ++   +|++++.+|..|+||||.
T Consensus       160 l~~~~~ga~~~~~d~~g~TpLh~  182 (260)
T 3jxi_A          160 TENGHKQADLRRQDSRGNTVLHA  182 (260)
T ss_dssp             HHCSSCCCCTTCCCTTSCCHHHH
T ss_pred             HhccccCCCCcccCCCCCcHHHH
Confidence            99   999999999999999985

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=3.1e-28  Score=150.22  Aligned_cols=128  Identities=24%  Similarity=0.335  Sum_probs=121.0

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      +++..+..|.||||. +..|+.+++++|++.+  .+++.++..|.||||+|+..|+.+++++|++.+.+   ++.++..|
T Consensus        28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g  101 (156)
T 1bd8_A           28 HPDALNRFGKTALQV-MMFGSTAIALELLKQG--ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD---VNVPDGTG  101 (156)
T ss_dssp             CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTS
T ss_pred             CccccCCCCCcHHHH-HHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCC
Confidence            678888999999999 9999999999999987  78889999999999999999999999999999877   77788899


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHc
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR  136 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  136 (156)
                      .||||+|+..++.+++++|++. ++++.++..|.||+++|+..|+.+++++|+++
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          102 ALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999999999 99999999999999999999999999999875

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=5.6e-28  Score=148.74  Aligned_cols=123  Identities=33%  Similarity=0.389  Sum_probs=116.4

Q ss_pred             ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (156)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+..|.||||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..++.+++++|++.+.+   ++.++..|.|||
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L  104 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAG--VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTAL  104 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCC---CCCCCCCCCCHH
Confidence            4667999999999999999999999987  77888999999999999999999999999999877   777889999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHH
Q 031607           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL  133 (156)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  133 (156)
                      |+|+..++.+++++|++.|++++.++..|.||+++|+..|+.+++++|
T Consensus       105 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          105 HWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999999999999999999999999999999999987

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=6e-29  Score=163.40  Aligned_cols=139  Identities=27%  Similarity=0.398  Sum_probs=125.9

Q ss_pred             ccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHH
Q 031607            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (156)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~   87 (156)
                      ..+.++||.|+..|+.+++++|++.+  .+++.+|..|+||||+|+..|+.+++++|++.+.+   ++.++..|.||||+
T Consensus        35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpL~~  109 (239)
T 1ycs_B           35 PLPLALLLDSSLEGEFDLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHC  109 (239)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTSTT--SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTCCCHHHH
T ss_pred             chhhHHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHH
Confidence            56789999999999999999999988  68899999999999999999999999999999887   78889999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccCcCCCC-cHHHHH--HHCCCHHHHHHHHHcCCCCCcccccccccc
Q 031607           88 AASIGNVTIVEMLLSKGADVNLKNDGGR-TALHYA--ASKGWLKIVELLISRGAKINSKDKACWLHS  151 (156)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (156)
                      |+..++.+++++|+++|++++.++..+. ||+++|  +..|+.+++++|+++|++++..+..+.+++
T Consensus       110 A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al  176 (239)
T 1ycs_B          110 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL  176 (239)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEES
T ss_pred             HHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEE
Confidence            9999999999999999999999998777 999999  778999999999999999988765544433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.96  E-value=3.1e-29  Score=162.98  Aligned_cols=140  Identities=24%  Similarity=0.295  Sum_probs=114.7

Q ss_pred             cccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhh-cccccccccccCCCch
Q 031607            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV-DESANVVNAVDEEGWA   83 (156)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~   83 (156)
                      ..+..|.|+||.|+..|+.+++++|++.+  .+++.++..|+||||+||..|+.+++++|++. +.+   ++.++..|.|
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~d~~g~t  142 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE---LNQQNKLGDT  142 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC---CCCCCTTSCC
T ss_pred             ccccccccccccccccCcHHHHHHHHhCC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC---ccccCCCCCC
Confidence            34567899999999999999999999987  78888999999999999999999999999988 666   7788999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccc
Q 031607           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWL  149 (156)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t  149 (156)
                      |||+|+..++.+++++|++.|++++.++..|.||+++|+..+..++++.|++.|+.....+..++.
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~l  208 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYL  208 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhhc
Confidence            999999999999999999999999999999999999999999999999999999999888877653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=5.3e-28  Score=158.22  Aligned_cols=147  Identities=27%  Similarity=0.304  Sum_probs=85.8

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccC-CCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~-~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (156)
                      |++..+..|.+||+.|+..|+.+++++|++.+  .+.+. .+..|.||||+|+..++.+++++|++.+.+   ++..+..
T Consensus        34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~  108 (240)
T 3eu9_A           34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKG--AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD---PSLIDGE  108 (240)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTT
T ss_pred             CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC--CcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC---CcccCCC
Confidence            34445555555555555555555555555554  22221 223355555555555555555555555444   3334444


Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcC----------------------------------CCCccCcC-CCCcHHHHHHHCC
Q 031607           81 GWAPIHSAASIGNVTIVEMLLSKG----------------------------------ADVNLKND-GGRTALHYAASKG  125 (156)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~l~~~~----------------------------------~~~~~~~~-~~~~~l~~a~~~~  125 (156)
                      |.|||+.|+..++.+++++|++.|                                  ++++..+. .|.|||++|+..+
T Consensus       109 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~  188 (240)
T 3eu9_A          109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG  188 (240)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcC
Confidence            555555555555555555555544                                  44444444 5667777777778


Q ss_pred             CHHHHHHHHHcCCCCCcccccccccccC
Q 031607          126 WLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       126 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      +.+++++|+++|++++.++..|.||++.
T Consensus       189 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  216 (240)
T 3eu9_A          189 NTTVISLLLEAGANVDAQNIKGESALDL  216 (240)
T ss_dssp             CHHHHHHHHHHTCCTTCBCTTSCBHHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            8888888888888888888888888764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=2.1e-29  Score=159.76  Aligned_cols=137  Identities=15%  Similarity=0.143  Sum_probs=115.8

Q ss_pred             CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCC-CCCchHHHHHHHcCCh----HHHHHHHhhcccccccccccCCCchH
Q 031607           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHP----EVVEILLSVDESANVVNAVDEEGWAP   84 (156)
Q Consensus        10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~-~~g~~~l~~A~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~~   84 (156)
                      +.++|+.|++.|+++.++.++..+    .+..+ ..|+||||+|+..++.    +++++|++.|.+   ++.++..|+||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~----~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad---vn~~d~~g~Tp   78 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG----YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD---IKSRTKEGTTL   78 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS----SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC---SSCCCTTCCCT
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC----cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC---CCCCCCCCCcH
Confidence            456899999999999998888765    34444 6799999999998875    489999998888   77888899999


Q ss_pred             HHHHHhcCC------HHHHHHHHHcCCCCccCcCCCC-cHHHHHHHCC-----CHHHHHHHHH-cCCCCCcccccccccc
Q 031607           85 IHSAASIGN------VTIVEMLLSKGADVNLKNDGGR-TALHYAASKG-----WLKIVELLIS-RGAKINSKDKACWLHS  151 (156)
Q Consensus        85 l~~a~~~~~------~~~~~~l~~~~~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~Ll~-~g~~~~~~~~~~~t~l  151 (156)
                      ||+|+..++      .+++++|++.|++++.+|..|. ||||+|+..+     ..+++++|++ +|++++.+|..|.|||
T Consensus        79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL  158 (186)
T 3t8k_A           79 FFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL  158 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence            999998876      5789999999999999999999 9999999854     3468899999 8999999999999998


Q ss_pred             cC
Q 031607          152 IA  153 (156)
Q Consensus       152 ~~  153 (156)
                      |.
T Consensus       159 ~~  160 (186)
T 3t8k_A          159 EF  160 (186)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=3.9e-29  Score=151.28  Aligned_cols=127  Identities=28%  Similarity=0.340  Sum_probs=74.7

Q ss_pred             cccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchH
Q 031607            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP   84 (156)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~   84 (156)
                      .++..|.|+||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..++.+++++|++.+.+   ++.++..|.||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~   79 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---VNTTGYQNDSP   79 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCGGGCCH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---ccCcCCCCCCH
Confidence            34555666666666666666666666654  45555566666666666666666666666655554   44555556666


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHc
Q 031607           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR  136 (156)
Q Consensus        85 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  136 (156)
                      ||+|+..++.+++++|++.|++++.++..|.||+++|+..+..+++++|.+.
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            6666666666666666666666666666666666666655555555554443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.95  E-value=1.5e-27  Score=163.62  Aligned_cols=142  Identities=30%  Similarity=0.436  Sum_probs=117.2

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCC-CCchHHHHHHHcCChHHHHHHHhhcccccc--------------
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRND-DDRTLLHVAASCGHPEVVEILLSVDESANV--------------   73 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~-~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~--------------   73 (156)
                      .+.|+|+.|++.|++++|++|+++|  ++++.++. .|+||||+||..|+.+++++|++++.....              
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~G--advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~  101 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI  101 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence            4688999999999999999999988  77777764 589999999999999999999988765321              


Q ss_pred             ----------------cccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccC----------cCCCCcHHHHHHHCCCH
Q 031607           74 ----------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK----------NDGGRTALHYAASKGWL  127 (156)
Q Consensus        74 ----------------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~l~~a~~~~~~  127 (156)
                                      ++.++..|.||+++|+..++.++++++++.|++++.+          +..|.|||++|+..|+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~  181 (337)
T 4g8k_A          102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  181 (337)
T ss_dssp             HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred             cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence                            3456677888999999999999999888888776543          33577899999998888


Q ss_pred             HHHHHHHH-cCCCCCccccccccccc
Q 031607          128 KIVELLIS-RGAKINSKDKACWLHSI  152 (156)
Q Consensus       128 ~~~~~Ll~-~g~~~~~~~~~~~t~l~  152 (156)
                      +++++|++ .|++++.++..|.||++
T Consensus       182 ~~v~~LL~~~gad~n~~d~~g~t~l~  207 (337)
T 4g8k_A          182 EVLKILLDEMGADVNACDNMGRNALI  207 (337)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHhccCCCcCccCCCCCcHHH
Confidence            88888886 48888888888888875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=2e-27  Score=143.73  Aligned_cols=115  Identities=34%  Similarity=0.444  Sum_probs=108.2

Q ss_pred             hccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCc
Q 031607           37 SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT  116 (156)
Q Consensus        37 ~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~  116 (156)
                      +. .++..|+||||+|+..|+.+++++|++.+.+   ++.++..|.||||+|+..++.+++++|++.|++++.++..|.|
T Consensus         3 d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t   78 (137)
T 3c5r_A            3 DP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS   78 (137)
T ss_dssp             -C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred             CC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence            44 6788999999999999999999999999877   6778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607          117 ALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus       117 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      |||+|+..++.+++++|+++|++++.+|..|.||++...
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  117 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD  117 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            999999999999999999999999999999999999753

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.95  E-value=3.2e-27  Score=159.94  Aligned_cols=135  Identities=20%  Similarity=0.199  Sum_probs=122.4

Q ss_pred             CcHHHHHHHhcCCHHHHHHHHHHHhhhhccC------CCCCCchHHHHHHHc---CChHHHHHHHhhcccccccccccCC
Q 031607           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSL------RNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVNAVDEE   80 (156)
Q Consensus        10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~------~~~~g~~~l~~A~~~---~~~~~~~~ll~~~~~~~~~~~~~~~   80 (156)
                      ..++|+.|+..|+++.+++|++.+  .+++.      .+..|+||||+|+..   ++.+++++|+.++.+   ++.++..
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---vn~~d~~  225 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAAD  225 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTT--CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC---TTCCCTT
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcC--CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC---CCCCCCC
Confidence            457899999999999999999887  56665      588999999999997   899999999999887   7788999


Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      |.||||+|+..++.+++++|+++|++++.+|..|.|||++|+..++.+++++|+++|++      .|.||||...
T Consensus       226 G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~  294 (301)
T 2b0o_E          226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDY  294 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC---
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999876      5889999753

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=3.3e-28  Score=154.29  Aligned_cols=137  Identities=15%  Similarity=0.183  Sum_probs=120.4

Q ss_pred             ccccc-ccCcHHHHHHHhcCCH----HHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCC------hHHHHHHHhhcccc
Q 031607            3 MDIDQ-TIKDKDLFKAAETGDS----STFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH------PEVVEILLSVDESA   71 (156)
Q Consensus         3 ~~~~~-~~~~~~l~~a~~~~~~----~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~------~~~~~~ll~~~~~~   71 (156)
                      ++..+ ..|.||||.|+..|+.    +++++|+++|  ++++.++..|+||||+|+..++      .+++++|++.|.+ 
T Consensus        30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G--advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-  106 (186)
T 3t8k_A           30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG--ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-  106 (186)
T ss_dssp             SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT--CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-
T ss_pred             cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-
Confidence            34444 6799999999999985    4899999988  8999999999999999999987      5789999999988 


Q ss_pred             cccccccCCCc-hHHHHHHhcC-----CHHHHHHHHH-cCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccc
Q 031607           72 NVVNAVDEEGW-APIHSAASIG-----NVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD  144 (156)
Q Consensus        72 ~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  144 (156)
                        ++.+|..|. ||||+|+..+     +.+++++|++ .|++++.+|..|.|||++|+..++.+++++|.+.....+.++
T Consensus       107 --in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          107 --ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             --SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             --CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence              888899999 9999999844     4568999999 899999999999999999999999999999998765555544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.95  E-value=2.2e-27  Score=141.14  Aligned_cols=111  Identities=33%  Similarity=0.479  Sum_probs=84.1

Q ss_pred             cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (156)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +..+.++||.|+..|+.+.+++|++.+  .+++.++..|+||||+|+..++.+++++|++.+.+   ++.++..|.||||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~tpL~   78 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLL   78 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTT--CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcC--CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHH
Confidence            345677888888888888888888776  56677777788888888888888888888877666   5666777788888


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHH
Q 031607           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (156)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~  122 (156)
                      +|+..++.+++++|++.|++++.++..|.||+++|.
T Consensus        79 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           79 SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            888888888888888777777777777888888773

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=2.1e-27  Score=143.50  Aligned_cols=114  Identities=26%  Similarity=0.333  Sum_probs=108.5

Q ss_pred             hhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCC-C
Q 031607           36 KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-G  114 (156)
Q Consensus        36 ~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~  114 (156)
                      .+++..+..|.||||+|+..|+.+++++|++.+.+   ++.++..|.||||+|+. ++.+++++|++.|++++.++.. |
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g   78 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD---PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATL   78 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC---cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCC
Confidence            46788899999999999999999999999999877   77788999999999999 9999999999999999999999 9


Q ss_pred             CcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          115 RTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       115 ~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .||||+|+..++.+++++|+++|++++.+|..|.||||.
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~  117 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL  117 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence            999999999999999999999999999999999999985

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=8.2e-27  Score=156.24  Aligned_cols=131  Identities=27%  Similarity=0.346  Sum_probs=123.1

Q ss_pred             CcccccccCcHHHHHHH-----hcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccc
Q 031607            2 DMDIDQTIKDKDLFKAA-----ETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA   76 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~-----~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~   76 (156)
                      +++..+..|.|||+.|+     ..++.++++.|++.+  ...+..+..|+||||+|+..|+.+++++|++.+.+   ++.
T Consensus       137 ~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g--~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad---~n~  211 (276)
T 4hbd_A          137 KVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG--NINAKASQAGQTALMLAVSHGRVDVVKALLACEAD---VNV  211 (276)
T ss_dssp             CTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHS--CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTC
T ss_pred             cCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCC
Confidence            67888999999999999     778999999999988  67777888999999999999999999999999888   778


Q ss_pred             ccCCCchHHHHHHhcCCHHHHHHHHH-cCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC
Q 031607           77 VDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (156)
Q Consensus        77 ~~~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g  137 (156)
                      ++..|.||||+|+..++.+++++|++ .|++++.+|..|.|||++|+..|+.+++++|+++.
T Consensus       212 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          212 QDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            89999999999999999999999999 79999999999999999999999999999999874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=1.5e-26  Score=137.54  Aligned_cols=111  Identities=31%  Similarity=0.327  Sum_probs=103.3

Q ss_pred             CCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHH
Q 031607           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (156)
Q Consensus        42 ~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a  121 (156)
                      +..|.+|||+|+..|+.+++++|++.+.+   ++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED---VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC---TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC---cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            45688999999999999999999998877   777888999999999999999999999999999999999999999999


Q ss_pred             HHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607          122 ASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus       122 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      +..++.+++++|+++|++++.+|..|.||++...
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            9999999999999999999999999999998653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=5.1e-26  Score=156.06  Aligned_cols=147  Identities=30%  Similarity=0.355  Sum_probs=99.8

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccC----------CCCCCchHHHHHHHcCChHHHHHHHhh-ccc
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSL----------RNDDDRTLLHVAASCGHPEVVEILLSV-DES   70 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~----------~~~~g~~~l~~A~~~~~~~~~~~ll~~-~~~   70 (156)
                      +++..+..|.||++.|+..|+.++++++++.+  ++++.          .+..|.||||+|+..|+.+++++|+.. +.+
T Consensus       117 ~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~g--a~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad  194 (337)
T 4g8k_A          117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRG--ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD  194 (337)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC
T ss_pred             hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcC--CCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC
Confidence            56677778888888888888888888888876  33322          344578888888888888888888854 444


Q ss_pred             ccccccccCCCchHHHHHHhcCC----HHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHc-CCCCCcccc
Q 031607           71 ANVVNAVDEEGWAPIHSAASIGN----VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDK  145 (156)
Q Consensus        71 ~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~  145 (156)
                         ++.++..|.++++.++..+.    ..++++|++.|++++.++..|.||||+|+..++.+++++|++. |++++.+|.
T Consensus       195 ---~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~  271 (337)
T 4g8k_A          195 ---VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS  271 (337)
T ss_dssp             ---TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCT
T ss_pred             ---cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCC
Confidence               55556666666665554322    2355666666666666666666666666666666666666653 666666666


Q ss_pred             cccccccC
Q 031607          146 ACWLHSIA  153 (156)
Q Consensus       146 ~~~t~l~~  153 (156)
                      .|+||||.
T Consensus       272 ~G~TpL~~  279 (337)
T 4g8k_A          272 DGKTALLL  279 (337)
T ss_dssp             TSCBHHHH
T ss_pred             CCCCHHHH
Confidence            66666653

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.94  E-value=4.1e-26  Score=157.99  Aligned_cols=143  Identities=23%  Similarity=0.251  Sum_probs=117.3

Q ss_pred             cccCcHHHHHHHhc-CCHHHHHHHHHHHhhhhccCCC--CCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCch
Q 031607            7 QTIKDKDLFKAAET-GDSSTFKSLSKQQLLKSLSLRN--DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (156)
Q Consensus         7 ~~~~~~~l~~a~~~-~~~~~v~~ll~~~~~~~~~~~~--~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~   83 (156)
                      ...+.++||.|+.. |++++++.|++.+  .+++..+  ..|.||||+|+..++.+++++|++++.+   ++.++..|.|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~G--advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad---vn~~d~~G~T  270 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHG--ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN---VNQADSAGRG  270 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTT--CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCC
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcC--CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCCCCCCCC
Confidence            44567899999999 9999999999988  6777777  8899999999999999999999999887   7788999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC---CCCCcccccccccccCC
Q 031607           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG---AKINSKDKACWLHSIAP  154 (156)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g---~~~~~~~~~~~t~l~~~  154 (156)
                      |||+|+..++.+++++|+++|++++.+|..|.|||++|+..++.+++++|+..+   .+....+..+.|++...
T Consensus       271 pLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~  344 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF  344 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------
T ss_pred             HHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999875   34445566777777643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=3.6e-26  Score=144.58  Aligned_cols=112  Identities=24%  Similarity=0.374  Sum_probs=103.0

Q ss_pred             cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccccc-CCCchHH
Q 031607            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPI   85 (156)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~l   85 (156)
                      +..|.||||.|+..|+.++++.|++ +  .+++.++..|+||||+|+..|+.+++++|++.+.+   ++.++ ..|.|||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~g~tpL  114 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTAL  114 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCSSSSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCCHH
Confidence            4578899999999999999999999 5  68888999999999999999999999999999887   66666 8899999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHC
Q 031607           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK  124 (156)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~  124 (156)
                      |+|+..++.+++++|+++|++++.++..|.||+++|+..
T Consensus       115 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI  153 (183)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh
Confidence            999999999999999999999999999999999999875

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=1.7e-26  Score=152.18  Aligned_cols=127  Identities=24%  Similarity=0.366  Sum_probs=115.5

Q ss_pred             cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccccc-CCCchHH
Q 031607            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPI   85 (156)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~l   85 (156)
                      +..|.||||.|+..|+.++++.|++ +  .+++.++..|+||||+||..|+.+++++|++.+.+   ++.++ ..|.|||
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~g~t~L  115 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTAL  115 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-T--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCSSSCCCHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-C--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCcCCCCCCCCHH
Confidence            3468999999999999999999999 5  68889999999999999999999999999999887   66666 7899999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHH----------------HCCCHHHHHHHHHcCCC
Q 031607           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA----------------SKGWLKIVELLISRGAK  139 (156)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~----------------~~~~~~~~~~Ll~~g~~  139 (156)
                      |+|+..++.+++++|++.|++++.++..|.||+++|+                ..|+.+++++|++++.+
T Consensus       116 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          116 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            9999999999999999999999999999999998888                56788999999987544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.93  E-value=2.8e-25  Score=148.94  Aligned_cols=129  Identities=21%  Similarity=0.235  Sum_probs=117.4

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhh----ccCCCCCCchHHHHHHHc---CChHHHHHHHhhcccccccccccCCC
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKS----LSLRNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~----~~~~~~~g~~~l~~A~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      ...++|+.|+..|+++.++.+++.+....    ++..+..|+||||+|+..   ++.+++++|++.+.+   ++.++..|
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~---in~~d~~g  205 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKG  205 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---TTCCCTTC
T ss_pred             hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC---ccccCCCC
Confidence            34679999999999999999999883222    455578899999999999   899999999999988   78889999


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI  140 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~  140 (156)
                      .||||+|+..++.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++.
T Consensus       206 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          206 STALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999998754

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.3e-25  Score=135.56  Aligned_cols=109  Identities=39%  Similarity=0.472  Sum_probs=103.2

Q ss_pred             CCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHH
Q 031607           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (156)
Q Consensus        42 ~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a  121 (156)
                      ...+.||||+|+..|+.+++++|++.+.+   ++.++..|.|+||+|+..++.+++++|++.|++++.++..|.||||+|
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            45689999999999999999999999877   777889999999999999999999999999999999999999999999


Q ss_pred             HHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          122 ASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       122 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      +..++.+++++|+++|++++.+|..|.||||.
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~  119 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI  119 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHH
Confidence            99999999999999999999999999999985

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.1e-25  Score=145.72  Aligned_cols=126  Identities=27%  Similarity=0.236  Sum_probs=106.2

Q ss_pred             HHHHHHHHhhhh-ccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcC
Q 031607           26 FKSLSKQQLLKS-LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG  104 (156)
Q Consensus        26 v~~ll~~~~~~~-~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~  104 (156)
                      ++.|++++.... .+..+..|.||||+|+..|+.+++++|++.+.+   ++.++..|.||||+|+..++.+++++|++.|
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g   77 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND---PSQPNEEGITALHNAICGANYSIVDFLITAG   77 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            356777762211 233456788999999999999999999999887   7778999999999999999999999999999


Q ss_pred             CCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccc-ccccccccCC
Q 031607          105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KACWLHSIAP  154 (156)
Q Consensus       105 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~~  154 (156)
                      ++++.++..|.|||++|+..|+.+++++|+++|++++.++ ..|+||||..
T Consensus        78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  128 (229)
T 2vge_A           78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKC  128 (229)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence            9999999999999999999999999999999999999987 6999999975

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.93  E-value=7.4e-25  Score=124.06  Aligned_cols=93  Identities=49%  Similarity=0.757  Sum_probs=82.4

Q ss_pred             CCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHH
Q 031607           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (156)
Q Consensus        44 ~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~  123 (156)
                      +|+||||+|+..|+.+++++|++.+.+   ++.++..|.||||+|+..++.+++++|++.|++++.++..|.||+++|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            478999999999999999999988877   67788889999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHcCCC
Q 031607          124 KGWLKIVELLISRGAK  139 (156)
Q Consensus       124 ~~~~~~~~~Ll~~g~~  139 (156)
                      .++.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            9999999999998874

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=6.4e-25  Score=130.51  Aligned_cols=107  Identities=47%  Similarity=0.689  Sum_probs=102.1

Q ss_pred             CCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHH
Q 031607           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (156)
Q Consensus        44 ~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~  123 (156)
                      +|+||||+|+..|+.+++++|++.+.+   ++..+..|.|+||+|+..++.+++++|++.|++++.++..|.||+++|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence            489999999999999999999999877   67778899999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          124 KGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       124 ~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .++.+++++|+++|++++.+|..|.||++.
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~  107 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHL  107 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            999999999999999999999999999975

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.93  E-value=8.8e-26  Score=132.62  Aligned_cols=109  Identities=41%  Similarity=0.568  Sum_probs=99.4

Q ss_pred             CCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHH
Q 031607           40 LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH  119 (156)
Q Consensus        40 ~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~  119 (156)
                      .+|..|+||||+||..++.+++++|++.+.+   ++.++..|.||||+|+..++.+++++|++.|++++.++..|.|||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC---SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            4688999999999999999999999998877   6778889999999999999999999999999999999999999999


Q ss_pred             HHHHCCCHHHHHHHHHcCCCCCcccccccccc
Q 031607          120 YAASKGWLKIVELLISRGAKINSKDKACWLHS  151 (156)
Q Consensus       120 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (156)
                      +|+..++.+++++|+++|++++.++..|.+|-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999999998874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=2.9e-25  Score=137.03  Aligned_cols=111  Identities=28%  Similarity=0.361  Sum_probs=101.9

Q ss_pred             cCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCc-H
Q 031607           39 SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT-A  117 (156)
Q Consensus        39 ~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~  117 (156)
                      ...+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||+|+ .++.+++++|++.|++++.++..|.| |
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP   81 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC---TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            34577899999999999999999999998877   7778889999999985 89999999999999999999999999 9


Q ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          118 LHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       118 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~  117 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL  117 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            999999999999999999999999999999999985

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=9.8e-25  Score=137.96  Aligned_cols=108  Identities=31%  Similarity=0.386  Sum_probs=101.7

Q ss_pred             CCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCc-CCCCcHHHH
Q 031607           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHY  120 (156)
Q Consensus        42 ~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~  120 (156)
                      +..|.||||+|+..|+.+++++|++ +.+   ++.++..|.||||+|+..++.+++++|++.|++++.++ ..|.||||+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            3468999999999999999999998 665   77889999999999999999999999999999999888 889999999


Q ss_pred             HHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          121 AASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       121 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      |+..|+.+++++|+++|++++.+|..|.||||.
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~  149 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIEVEDERGLTALEL  149 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHH
Confidence            999999999999999999999999999999975

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=6.8e-25  Score=142.50  Aligned_cols=112  Identities=31%  Similarity=0.371  Sum_probs=105.4

Q ss_pred             CCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHc-CCCCccCcCCCCcHHH
Q 031607           41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALH  119 (156)
Q Consensus        41 ~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~  119 (156)
                      .+..|.||||+||..|+.+++++|++.+.+   ++.++..|.|+||+|+..++.+++++|++. |++++.++..|.||||
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG---VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH  145 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence            356789999999999999999999998877   777889999999999999999999999998 9999999999999999


Q ss_pred             HHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607          120 YAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus       120 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      +|+..|+.+++++|+++|++++.+|..|.|||+...
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  181 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT  181 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhc
Confidence            999999999999999999999999999999998653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=2.7e-24  Score=141.65  Aligned_cols=107  Identities=32%  Similarity=0.396  Sum_probs=101.1

Q ss_pred             CCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCc-CCCCcHHHHH
Q 031607           43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYA  121 (156)
Q Consensus        43 ~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a  121 (156)
                      ..|.||||+|+..|+.+++++|+. +.+   ++.++..|.||||+|+..++.+++++|++.|++++.++ ..|.||||+|
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            468999999999999999999998 665   77889999999999999999999999999999999988 7899999999


Q ss_pred             HHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          122 ASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       122 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      +..|+.+++++|+++|++++.+|..|.||||.
T Consensus       119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~  150 (244)
T 3ui2_A          119 AGYVRPEVVEALVELGADIEVEDERGLTALEL  150 (244)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            99999999999999999999999999999985

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=2e-23  Score=118.16  Aligned_cols=93  Identities=37%  Similarity=0.516  Sum_probs=86.1

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (156)
                      .|.||||.|+..|+.+++++|++.+  .+++.+|..|+||||+|+..++.+++++|++.+.+   ++.++..|.||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHH
Confidence            3789999999999999999999987  78889999999999999999999999999999887   778889999999999


Q ss_pred             HhcCCHHHHHHHHHcCCC
Q 031607           89 ASIGNVTIVEMLLSKGAD  106 (156)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~  106 (156)
                      +..++.+++++|++.|++
T Consensus        76 ~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           76 ARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHTTCHHHHHHHHHTTCC
T ss_pred             HHcCCHHHHHHHHHcCCC
Confidence            999999999999998863

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=1.6e-25  Score=155.44  Aligned_cols=139  Identities=18%  Similarity=0.195  Sum_probs=111.3

Q ss_pred             ccCcHHHHHHHhcCCHHHHHHHHHHHhhh-hccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLK-SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (156)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~-~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+.||||.|++.|+.++|++|++.+.+. .....+..|.||||+|+..|+.+++++|++++.+....+..... .||||
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh  168 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR  168 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred             CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence            34579999999999999999999987311 11234556889999999999999999999998542111112222 89999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCcc--CcCCCCcHHHHHH-HCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           87 SAASIGNVTIVEMLLSKGADVNL--KNDGGRTALHYAA-SKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      +|+..|+.+++++|++.|++++.  .+..|.|||++|+ ..|+.+++++|+++|+       .|.||++..
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~A  232 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHE  232 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCT
T ss_pred             HHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHH
Confidence            99999999999999999998776  7888999999999 9999999999999774       378888764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.90  E-value=8.3e-25  Score=149.68  Aligned_cols=118  Identities=19%  Similarity=0.117  Sum_probs=102.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhhhccC-CCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcC
Q 031607           14 LFKAAETGDSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (156)
Q Consensus        14 l~~a~~~~~~~~v~~ll~~~~~~~~~~-~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~   92 (156)
                      .+.|+..+..++++.|++.+  .+++. ++..|+||||+||..|+.+++++|++.+.+   ++.++..|.||||+|+..+
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g--~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad---~n~~d~~g~TpLh~A~~~g  175 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN---RLYGDNMGESCLVKAVKSV  175 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSC--CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTBCCTTCCCHHHHHHHSS
T ss_pred             hHHHHHhhHHHHHHHHHhcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhc
Confidence            46677667677777777776  78888 899999999999999999999999999987   7788999999999999998


Q ss_pred             C---HHHHHHHHHcC-CCCccCcCCCCcHHHHHHH----CCCHHHHHHHHHc
Q 031607           93 N---VTIVEMLLSKG-ADVNLKNDGGRTALHYAAS----KGWLKIVELLISR  136 (156)
Q Consensus        93 ~---~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~----~~~~~~~~~Ll~~  136 (156)
                      +   .++++.|++.+ .+++.++..|.||||+|+.    .|+.+++++|++.
T Consensus       176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence            8   67778888775 6789999999999999999    8999999999987

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=5.1e-24  Score=125.05  Aligned_cols=109  Identities=34%  Similarity=0.461  Sum_probs=99.9

Q ss_pred             cccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchH
Q 031607            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP   84 (156)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+..|.|+||.|+..|+.+++++|++.+  .+++.++..|+||||+|+..++.+++++|++.+.+   ++.++..|.||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~tp   78 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKG--ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTP   78 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTT--CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---TTCCCTTCCCT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCH
Confidence            56789999999999999999999999987  77888999999999999999999999999999877   77788899999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHH
Q 031607           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL  118 (156)
Q Consensus        85 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  118 (156)
                      |++|+..++.+++++|++.|++++.++..+.+|-
T Consensus        79 l~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           79 EHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             THHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999999998888774

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=3.8e-21  Score=130.19  Aligned_cols=107  Identities=19%  Similarity=0.204  Sum_probs=98.5

Q ss_pred             CCchHHHHHHHcCChHHHHHHHhhccccccccc------ccCCCchHHHHHHhc---CCHHHHHHHHHcCCCCccCcCCC
Q 031607           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNA------VDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGG  114 (156)
Q Consensus        44 ~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~  114 (156)
                      ...++|+.|+..++.+.++.|+..+.+   ++.      .+..|.||||+|+..   ++.+++++|++.|++++.+|..|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d---~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G  226 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQD---FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG  226 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCC---TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCc---ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCC
Confidence            345779999999999999999988877   444      578899999999987   89999999999999999999999


Q ss_pred             CcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          115 RTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       115 ~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .||||+|+..|+.+++++|+++|++++.+|..|.|||+.
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~  265 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI  265 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            999999999999999999999999999999999999985

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=1.1e-21  Score=135.78  Aligned_cols=110  Identities=25%  Similarity=0.306  Sum_probs=101.6

Q ss_pred             CCCCCchHHHHHHHc-CChHHHHHHHhhccccccccccc--CCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcH
Q 031607           41 RNDDDRTLLHVAASC-GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA  117 (156)
Q Consensus        41 ~~~~g~~~l~~A~~~-~~~~~~~~ll~~~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  117 (156)
                      ....+.++||.|+.. ++.+++++|+..+.+   ++..+  ..|.||||+|+..++.+++++|++.|++++.+|..|.||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad---vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~Tp  271 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGAD---VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGP  271 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCC---TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCC---CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            344567899999999 999999999999887   56666  789999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          118 LHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       118 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus       272 Lh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~  307 (368)
T 3jue_A          272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI  307 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHH
Confidence            999999999999999999999999999999999985

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.86  E-value=3.7e-21  Score=138.23  Aligned_cols=108  Identities=19%  Similarity=0.181  Sum_probs=99.1

Q ss_pred             CCCchHHHHHHHcCChHHHHHHHhhcccccccccc------cCCCchHHHHHHh---cCCHHHHHHHHHcCCCCccCcCC
Q 031607           43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAV------DEEGWAPIHSAAS---IGNVTIVEMLLSKGADVNLKNDG  113 (156)
Q Consensus        43 ~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~------~~~~~~~l~~a~~---~~~~~~~~~l~~~~~~~~~~~~~  113 (156)
                      ....+.||.|+..|+.+.++.|+..+.+   ++..      +..|.||||+|+.   .++.+++++|++.|++++.+|..
T Consensus       130 ~~~~~~L~~A~~~g~~~~v~~ll~~g~~---~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~  206 (497)
T 3lvq_E          130 TPEPQRLWTAICNRDLLSVLEAFANGQD---FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD  206 (497)
T ss_dssp             C-CHHHHHHHHHHTCHHHHHHHHHTTCC---SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSS
T ss_pred             cccHHHHHHHHhccCHHHHHHHHhhccc---ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCC
Confidence            3445789999999999999999999887   4444      7789999999966   89999999999999999999999


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          114 GRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       114 ~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus       207 g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~  246 (497)
T 3lvq_E          207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI  246 (497)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            9999999999999999999999999999999999999985

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.85  E-value=8.4e-24  Score=146.87  Aligned_cols=128  Identities=16%  Similarity=0.147  Sum_probs=107.9

Q ss_pred             ccccCcHHHHHHHhcCCHHHHHHHHHHHhh---hhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccc--ccCC
Q 031607            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLL---KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA--VDEE   80 (156)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~---~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~--~~~~   80 (156)
                      .+..+.+|||.|+..|+.++|++|++.+..   .+++  +.+ +||||+|+..|+.+++++|++++.+   ++.  .+..
T Consensus       124 ~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~--~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~---~~~~~~d~~  197 (376)
T 2aja_A          124 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ--AEN-YHAFRLAAENGHLHVLNRLCELAPT---EATAMIQAE  197 (376)
T ss_dssp             -CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS--HHH-HHHHHHHHHTTCHHHHHHHHHSCGG---GHHHHHHHH
T ss_pred             hccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccC--CCC-CCHHHHHHHCCCHHHHHHHHHcCCc---cchhccCCC
Confidence            344678899999999999999999998832   2333  223 9999999999999999999999876   444  6778


Q ss_pred             CchHHHHHH-hcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccc
Q 031607           81 GWAPIHSAA-SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA  146 (156)
Q Consensus        81 ~~~~l~~a~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  146 (156)
                      |.||||+|+ ..|+.+++++|++.|.       .+.||+++|+..|+.+++++|+++|++++..+..
T Consensus       198 g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~  257 (376)
T 2aja_A          198 NYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA  257 (376)
T ss_dssp             HHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHH
Confidence            999999999 9999999999998753       2679999999999999999999999888665543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.85  E-value=8.1e-21  Score=110.57  Aligned_cols=93  Identities=33%  Similarity=0.448  Sum_probs=78.3

Q ss_pred             ccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcH
Q 031607           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA  117 (156)
Q Consensus        38 ~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  117 (156)
                      ....+.+|.|+||+|+..|+.+++++|++.+.+   ++.++..|.|+||+|+..++.+++++|++.|++++.++..|.||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp   93 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD---VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA   93 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence            344577889999999999999999999988776   67778889999999999999999999999999999888899999


Q ss_pred             HHHHHHCCCHHHHHHH
Q 031607          118 LHYAASKGWLKIVELL  133 (156)
Q Consensus       118 l~~a~~~~~~~~~~~L  133 (156)
                      +++|+..++.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999988876

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=1.9e-20  Score=125.51  Aligned_cols=108  Identities=17%  Similarity=0.121  Sum_probs=98.2

Q ss_pred             chHHHHHHHcCChHHHHHHHhhcccccc---cccccCCCchHHHHHHhc---CCHHHHHHHHHcCCCCccCcCCCCcHHH
Q 031607           46 RTLLHVAASCGHPEVVEILLSVDESANV---VNAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTALH  119 (156)
Q Consensus        46 ~~~l~~A~~~~~~~~~~~ll~~~~~~~~---~~~~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~l~  119 (156)
                      .++|+.|+..++.+.+..++..+.+...   ++..+..|.||||+|+..   ++.+++++|++.|++++.+|..|.||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            4689999999999999999988766321   234477899999999999   8999999999999999999999999999


Q ss_pred             HHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          120 YAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       120 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      +|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~  244 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDI  244 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHH
Confidence            9999999999999999999999999999999985

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.83  E-value=3.9e-20  Score=107.63  Aligned_cols=92  Identities=28%  Similarity=0.381  Sum_probs=82.8

Q ss_pred             ccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCch
Q 031607            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (156)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~   83 (156)
                      ...+..|.++||.|+..|+.+++++|++.+  .+++.+|..|+||||+|+..++.+++++|+..+.+   ++.++..|.|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t   92 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGKT   92 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCC
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccccCCCc
Confidence            345677899999999999999999999987  78888999999999999999999999999999877   7778899999


Q ss_pred             HHHHHHhcCCHHHHHHH
Q 031607           84 PIHSAASIGNVTIVEML  100 (156)
Q Consensus        84 ~l~~a~~~~~~~~~~~l  100 (156)
                      ||++|+..++.+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999876

>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A

Probab=80.41  E-value=2.5  Score=18.78  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=16.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHH
Q 031607           12 KDLFKAAETGDSSTFKSLSKQ   32 (156)
Q Consensus        12 ~~l~~a~~~~~~~~v~~ll~~   32 (156)
                      .-++.||..|+.+.++.|-.+
T Consensus        15 QqiyvA~seGd~etv~~Le~Q   35 (40)
T 1gp8_A           15 KQMDAAASKGDVETYRKLKAK   35 (40)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHH
Confidence            467889999999999877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-25
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-22
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-20
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-19
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-19
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-18
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-15
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-15
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-13
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-12
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	9e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	5e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-08
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	6e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	1e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (241), Expect = 3e-25
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LHVA+  GH  +V+ LL     A+  N  + +   P+H AA  G+  + + LL   A 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ--RGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
           VN K    +T LH AA  G   +V+LL+   A  N    A  
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH 100

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 4e-21
 Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 36/177 (20%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
              + +      L  AA  G +   K L + +    ++ +  DD+T LH AA  GH  +V
Sbjct: 25  SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA--KVNAKAKDDQTPLHCAARIGHTNMV 82

Query: 62  EILLS------------------------------VDESANVVNAVDEEGWAPIHSAASI 91
           ++LL                               + E       + ++G+ P+H AA  
Sbjct: 83  KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 142

Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
           G V + E+LL + A  N     G T LH A     L IV+LL+ RG   +S     +
Sbjct: 143 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY 199

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 7e-21
 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 35/165 (21%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  AA+ G +     L  +Q   + +L N    T LH+ A  GH  V ++L+      + 
Sbjct: 235 LHLAAQEGHAEMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 292

Query: 74  V------------------------------NAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
                                          NA  + G++P+H AA  G+  IV +LL  
Sbjct: 293 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 352

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELL---ISRGAKINSKDK 145
           GA  N  +  G T L  A   G++ + ++L       + +   DK
Sbjct: 353 GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 397

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (208), Expect = 1e-20
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           P+H A+ +G++ IV+ LL +GA  N+ N    T LH AA  G  ++ + L+   AK+N+K
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 144 DKACW--LHSIA 153
            K     LH  A
Sbjct: 63  AKDDQTPLHCAA 74

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (206), Expect = 2e-20
 Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 38/165 (23%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  A+  G     K+L ++    S ++ N    T LH+AA  GH EV + LL     A  
Sbjct: 4   LHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLL--QNKAK- 58

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSK------------------------------ 103
           VNA  ++   P+H AA IG+  +V++LL                                
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 104 ---GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
               A        G T LH AA  G +++ ELL+ R A  N+  K
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 163

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 1e-16
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LHVAA  G   V E+LL  D      NA  + G  P+H A    N+ IV++L
Sbjct: 128 MTKKGFTPLHVAAKYGKVRVAELLLERDAH---PNAAGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LHSIA 153
           L +G   +     G T LH AA +  +++   L+  G   N++       LH  A
Sbjct: 185 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 239

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 1e-15
 Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 9/152 (5%)

Query: 1   MDMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           ++ D       K+    L  A    +    K L  +    S      +  T LH+AA   
Sbjct: 152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG--GSPHSPAWNGYTPLHIAAKQN 209

Query: 57  HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116
             EV   LL         NA   +G  P+H AA  G+  +V +LLSK A+ NL N  G T
Sbjct: 210 QVEVARSLLQYG---GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDKACW 148
            LH  A +G + + ++LI  G  +++  +  +
Sbjct: 267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGY 298

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 4e-13
 Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 36/137 (26%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +    T LH+AA  GH E+V +   +       N  ++ G  P+H  A  G+V + ++L+
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVAL---LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 284

Query: 102 SKGADVNLKNDGGRTALHYAASKGW---------------------------------LK 128
             G  V+     G T LH A+  G                                    
Sbjct: 285 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 344

Query: 129 IVELLISRGAKINSKDK 145
           IV LL+  GA  N    
Sbjct: 345 IVTLLLKNGASPNEVSS 361

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 1   MDMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           +    D   K K     L +AA+ G +     L K     S +  + D  T L +A   G
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA--SPNEVSSDGTTPLAIAKRLG 374

Query: 57  HPEVVEILLSVDESANVVNAVDEEG 81
           +  V ++L  V +  + V   D+  
Sbjct: 375 YISVTDVLKVVTDETSFVLVSDKHR 399

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.6 bits (234), Expect = 7e-25
 Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 38/140 (27%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANV---------------------------- 73
                T L  AA  GH EV++ILL  +  A+V                            
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLD-EMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203

Query: 74  --------VNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASK 124
                   VN   E G  P+  A    ++ +V+ LL +   ++N  +  G+TAL  A   
Sbjct: 204 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL 263

Query: 125 GWLKIVELLISRGAKINSKD 144
              KI ELL  RGA  +  D
Sbjct: 264 KLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 2e-12
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGA 138
           E    +  A    +V +V+ LL  GA+VN +  +GG T LH A       IVELL+  GA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 139 KINSKDKACWLH 150
               + K     
Sbjct: 64  DPVLRKKNGATP 75

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 2e-11
 Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 44/179 (24%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDD-RTLLHVAASCGHPEVVEILLSV----- 67
           L KA +  D    + L +     +++ + ++   T LH A      ++VE+LL       
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGA--NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 68  -------------------------DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
                                          VN  D  G+     AA  G V  ++ L  
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 103 KGADVNLKN----------DGGRTALHYAASKGWLKIVELLISR-GAKINSKDKACWLH 150
           +GA+VNL+            GG TAL  AA KG ++++++L+   GA +N+ D      
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 1e-10
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           +D  LL  A      ++V+ LL  +  ANV    +E GW P+H+A  +    IVE+LL  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLL--EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
           GAD  L+   G T    AA  G +K+++L +S+GA +N  D   +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF 106

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 8e-10
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 12/119 (10%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLS-------VDESANVVNAVDEEGWAPIHSAASIGNV 94
           +    T    AA  G  + ++ L           ++      + + G   +  AA  G+V
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 95  TIVEMLLSK-GADVNLKNDGGR----TALHYAASKGWLKIVELLISRGAKINSKDKACW 148
            ++++LL + GADVN  ++ GR     AL  +       I  LL+  GA +N + +   
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 1   MDMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           +D   D  ++ +     L  A E       + L +Q+ +  ++  + D +T L +A    
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI-EINDTDSDGKTALLLAVELK 264

Query: 57  HPEVVEILLSVDESANVVNAVD 78
             ++ E+L      A+  +  D
Sbjct: 265 LKKIAELLCKRG--AS-TDCGD 283

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 88.8 bits (219), Expect = 2e-22
 Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 2/120 (1%)

Query: 31  KQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS 90
            +QL      +      +  VAA  G    ++ L  +  S  +V  +  E +     AA 
Sbjct: 76  AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 135

Query: 91  IGNVTIVEMLLSKGADVNLKN--DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
            G++ ++  L        +         A   AA  G L ++  L        +      
Sbjct: 136 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 195

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.1 bits (155), Expect = 2e-13
 Identities = 13/100 (13%), Positives = 22/100 (22%), Gaps = 14/100 (14%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  +      ++   G  ++V                       +        +  +  L
Sbjct: 248 RLKEMHDAFKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFL 298

Query: 101 LSKGADVNLKNDG-----GRTALHYAASKGWLKIVELLIS 135
           LS      L             L  A   G      LL+S
Sbjct: 299 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 53.7 bits (128), Expect = 7e-10
 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 7/138 (5%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
              AAE G       L +    + +++   ++     +AA  GH  V+  L  +  +   
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
                E  +A   +A   G+  ++  LL     +         A  +    G   +   +
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIHEFEYGEKYVNPFI 242

Query: 134 ISRGAKINSKDKACWLHS 151
                ++     A  L +
Sbjct: 243 ARHVNRLKEMHDAFKLSN 260

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 16/124 (12%)

Query: 39  SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           ++ N ++   L +        + +  +S   +   +  +  +    I    +     + +
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFIS--ANELSLMTLSYKEAIHIFLPGTKNMEQVRQ 63

Query: 99  MLLSKGADVNL-----------KNDGGRTALHYAASKG---WLKIVELLISRGAKINSKD 144
           +L    A  N            K          AA  G    L  + LL++    +    
Sbjct: 64  LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ 123

Query: 145 KACW 148
              +
Sbjct: 124 AENY 127

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 36  KSLSLRNDDDRTLLHVAASCGHPEVVEILLSV--DESANVVNAVDEEGWAPIHSAASIGN 93
           KS  L+       L         + +  LLS+   ++      +  +    +  A  +GN
Sbjct: 270 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 329

Query: 94  VTIVEMLLS 102
                +LLS
Sbjct: 330 QGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 45.7 bits (107), Expect = 5e-07
 Identities = 11/110 (10%), Positives = 19/110 (17%), Gaps = 13/110 (11%)

Query: 36  KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT 95
             L                 G   V   +              +E       +   G   
Sbjct: 214 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIA-------RHVNRLKEMHDAFKLSNPDGVFD 266

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +V           L+       L     +  L  +  L+S          
Sbjct: 267 LVT------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT 310

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRND---DDRTLLHVAASCGHPEVVEILLSVDE 69
           L +  +       + L     +K+L+       D   LL +A   G+     +LLS+  
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 341

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.0 bits (201), Expect = 5e-20
 Identities = 22/85 (25%), Positives = 40/85 (47%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           +    ++  +  +         ++E L      AN++NA D  G   ++ AA +GN++IV
Sbjct: 216 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV 275

Query: 98  EMLLSKGADVNLKNDGGRTALHYAA 122
           + LL  GAD  + N  G   + + A
Sbjct: 276 DALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.6 bits (174), Expect = 3e-16
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 13/125 (10%)

Query: 34  LLKSLSLRNDDDRTLLHVAASCGHPEV----------VEILLSVDESANVVNAVDEEGWA 83
           L   L L +  +RT+LH                    + +   V +    + +   E  +
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 84  PIHSAASIGNVTIVEMLLSK---GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
             +        +I+E L  K      +N ++  G T L+ AA  G + IV+ L+  GA  
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 285

Query: 141 NSKDK 145
              +K
Sbjct: 286 FIANK 290

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.0 bits (149), Expect = 1e-12
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 8/156 (5%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           D +Q +K +   +     +     +          S     ++   HV+      EV + 
Sbjct: 32  DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 91

Query: 64  LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123
             +     N+   VDE G  P+H   SI N+ +V+ L+  G++    ++ G + L  A  
Sbjct: 92  FPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 149

Query: 124 KGWLK----IVELLISRGAKINSKDKACW--LHSIA 153
                       LL      +  +D      LH I 
Sbjct: 150 SVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII 185

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.2 bits (196), Expect = 2e-19
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                RT LH AA   +  +V+    V E  +  +  DE+G  PI  AA  G + +V  L
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKY--LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           + +GA V   +    TA   A +     IV++  
Sbjct: 241 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.3 bits (147), Expect = 1e-12
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL------ 133
           E    +H+ A+ G+  I E +  +  ++       RT LH+ AS    +  E L      
Sbjct: 1   ESPIKLHTEAA-GSYAITEPITRESVNIIDPRHN-RTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 134 --ISRGAKINSKDKACW 148
             I+ GA +N+ D    
Sbjct: 59  ECIAAGADVNAMDCDEN 75

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.0 bits (141), Expect = 1e-11
 Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVEL 132
            ++   +G   +H AA + N+ IV+ L+  KG++ + +++ G+T +  AA +G +++V  
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 133 LISRGAKINSKDK 145
           LI +GA + + D 
Sbjct: 240 LIQQGASVEAVDA 252

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 1e-07
 Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 28/87 (32%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              +RT+LH  AS    E  E L+                                +  +
Sbjct: 30  PRHNRTVLHWIASNSSAEKSEDLIV----------------------------HEAKECI 61

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLK 128
           + GADVN  +    T L  A      +
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
           +  AA+ G       L +Q    S+   +  D T   +A +  H  +V+I  
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGA--SVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 79.4 bits (194), Expect = 4e-19
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LHVAA+ G+ EV+++L+        VN  D +GW P+H+AA  G      +L
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           +    D+   N  G+TA   A       I+  L     K N
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADE----DILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.1 bits (170), Expect = 1e-15
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
                + G   +H AA+ G   ++++L+    DVN+K+  G T LH AA  G  +   +L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 134 ISRGAKINSKDK 145
           +     + + +K
Sbjct: 252 VENLCDMEAVNK 263

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.4 bits (137), Expect = 4e-11
 Identities = 27/72 (37%), Positives = 36/72 (50%)

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
           V  +  A   +A S G+   V  LL +GAD+N  N  G TALH A     + +V+ L+  
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 137 GAKINSKDKACW 148
           GA IN  D   W
Sbjct: 96  GANINQPDNEGW 107

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.6 bits (114), Expect = 5e-08
 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             DD  +   A S G  E V  LL     A+ +N  + +G   +H A    NV +V+ L+
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLE--RGAD-INYANVDGLTALHQACIDDNVDMVKFLV 93

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLH 150
             GA++N  ++ G   LH AAS G+L I E LIS+GA + + +      
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.5 bits (184), Expect = 7e-18
 Identities = 28/112 (25%), Positives = 44/112 (39%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +D  T LH+A    H   ++ LL        ++  ++ G   +H AA +G  + VE L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153
           + GA V +   GG TALH A          +L+             +L    
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 2e-16
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 82  WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
             P+H A      +++E+LL  GAD   +  GGRT L  A  +    +  LL + GA   
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (159), Expect = 2e-14
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---VNLKNDGGRTALHYAASKGWL 127
           V   V E+G   +H A    +   ++ LL   A    ++L+ND G+TALH AA  G  
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 3e-10
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT LH+A       V+E+LL     A+   A    G  P+ SA    N  +  +L + GA
Sbjct: 193 RTPLHLAVEAQAASVLELLLK--AGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 106 DVNLKNDG 113
                 DG
Sbjct: 250 PEP--EDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 24/158 (15%), Positives = 43/158 (27%), Gaps = 22/158 (13%)

Query: 10  KDKD----LFKAAETGDSSTFKSL-SKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
             +D    L  A           L       + L L+ND  +T LH+AA  G    VE  
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK- 63

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL--------------K 110
             +  +   V   +  G   +H A  +   T   +LL                       
Sbjct: 64  --LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
           +     A   +      +          ++ +++    
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 9e-07
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAK---INSKDKACW--LH 150
             + G TALH A        ++ L+   A    ++ ++      LH
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALH 50

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLS 66
            + R    RT L  A    +P +  +L +
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRA 246

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 2e-16
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N +  T LH AAS    E+  +LL     AN  +A D      +H AA+ GN+ ++ +L
Sbjct: 99  VNQNGCTPLHYAASKNRHEIAVMLLE--GGANP-DAKDHYEATAMHRAAAKGNLKMIHIL 155

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L   A  N+++  G T LH A  +  ++  +LL+S+GA I  ++K
Sbjct: 156 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK 200

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 2e-15
 Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 35/137 (25%)

Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT--------- 95
              ++   A  G  E ++  +  D+S  +    D++    +H A S G+           
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLG 60

Query: 96  ------------------------IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
                                   IV+ LL KGA VN  N  G T LHYAASK   +I  
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 132 LLISRGAKINSKDKACW 148
           +L+  GA  ++KD    
Sbjct: 121 MLLEGGANPDAKDHYEA 137

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (163), Expect = 5e-15
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           L  A       +V++L    +    VNA    G + +HSA+  G + +V  L+  GAD +
Sbjct: 148 LIHAVENNSLSMVQLL---LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 204

Query: 109 LKNDGGRTALHYAASKGWLKIV 130
           LKN    T L  A S+  + I+
Sbjct: 205 LKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 5e-11
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 79  EEGWAPIHSAASIGNVTIVEMLLS----KGADVNLKNDGGRTALHYAASKGW 126
           E+G  P+H A   GN+  V  L++     G ++++ N+  +T LH A     
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 7e-10
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 1/107 (0%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +D  T LH+A   G+   V  L+++ +     ++  +     P+H A      ++V +L+
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
           + GA     +  G+TA H A        +  L+   A      +A  
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 107

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 9e-09
 Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N D  T LHVA +    E V++LL  +  A++     + G +P+  A    ++++V++LL
Sbjct: 107 NYDGLTALHVAVNTECQETVQLLL--ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 164

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GA+VN +   G +ALH A+ +G L +V  L+  GA  + K+ 
Sbjct: 165 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 208

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (162), Expect = 8e-15
 Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++  ++  LH AAS G  +++E+        + VN  D++GW P+  A + G+     +L
Sbjct: 134 KDKFNQIPLHRAASVGSLKLIEL--LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 191

Query: 101 LSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           + K GA+ +L ++ G  A   A ++   ++ +  ++   
Sbjct: 192 VEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 1e-11
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 84  PIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
           P+H A        V+ LL SK + +  K+  GR  LH++ S    +I   L+S+   +N 
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 143 KDKACWLH 150
            D      
Sbjct: 63  DDYPDDSG 70

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 1e-08
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
           LH A        V+ LL      +++   D++G  P+H + S     I   LLSK 
Sbjct: 4   LHQACMENEFFKVQELL--HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 5e-08
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++    T L  A + GH +   +L+     A   + VD +G      A    N  + +  
Sbjct: 168 QDKQGWTPLFHALAEGHGDAAVLLVE-KYGAEY-DLVDNKGAKAEDVAL---NEQVKKFF 222

Query: 101 LSKGAD 106
           L+   D
Sbjct: 223 LNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 2e-05
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 116 TALHYAASKGWLKIV-ELLISRGAKINSKDKACW--LH 150
             LH A  +     V ELL S+ + +  KD+     LH
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLH 39

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-05
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 78  DEEGWAPIHSAASIGNVTIVEMLLSKGAD-VNLKNDGGRTALHYAASKGWLKIVELLISR 136
           D+    P+H AAS+G++ ++E+L   G   VN ++  G T L +A ++G      LL+ +
Sbjct: 135 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 194

Query: 137 -GAKINSKDK 145
            GA+ +  D 
Sbjct: 195 YGAEYDLVDN 204

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 64.4 bits (155), Expect = 6e-14
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           ++  ++  +T LH AA+  + E V I   +       +A D++   P+  AA  G+    
Sbjct: 116 INAADNSGKTALHWAAAVNNTEAVNI---LLMHHANRDAQDDKDETPLFLAAREGSYEAS 172

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           + LL   A+  + +   R     A+ +    IV LL
Sbjct: 173 KALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.6 bits (132), Expect = 1e-10
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 96  IVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVELLISRGAKINSKDKACWLH 150
           ++  LL++GA++N   D  G T+LH AA        + L+  GA  NS+D      
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTP 59

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 2e-08
 Identities = 21/72 (29%), Positives = 34/72 (47%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +NA D  G   +H AA++ N   V +LL   A+ + ++D   T L  AA +G  +  + L
Sbjct: 116 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL 175

Query: 134 ISRGAKINSKDK 145
           +   A     D 
Sbjct: 176 LDNFANREITDH 187

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 4e-05
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 58  PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +V+  LL+  + A +   +D+ G   +H AA        + L
Sbjct: 2   AQVISDLLA--QGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 4e-04
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 37  SLSLRNDDDRTLLHVAASCGHPEVVEIL 64
           +  + +  DR    VA+   H ++V +L
Sbjct: 181 NREITDHMDRLPRDVASERLHHDIVRLL 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (152), Expect = 2e-13
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N +  T LH+A+  G+  +VE  L V   A+V       G   +H A  + N  +V +LL
Sbjct: 108 NYNGHTCLHLASIHGYLGIVE--LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 165

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GADVN     G +       +   +I + L     +      
Sbjct: 166 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 1e-08
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 80  EGWAPIHSAASIGNVT----IVEMLLSKGADVNLKNDGGRTALHYAASKGW 126
           +G + +H A           ++  +    A +N +N+  +T LH A     
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 7e-06
 Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 114 GRTALHYAASKGW----LKIVELLISRGAKINSKDKACW 148
           G + LH A         ++++  +    A +N ++    
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ 40

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 2e-04
 Identities = 4/45 (8%), Positives = 13/45 (28%), Gaps = 2/45 (4%)

Query: 39  SLRNDDDRTLLHVAASCGHPEVVEILLS--VDESANVVNAVDEEG 81
           +       +   +        + + L    ++    +  + DEE 
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 216

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 2e-13
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 33/127 (25%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-------------------------- 80
            LL  ++  G  ++V+ ++   +  ++ N                               
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 81  ----GWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTA--LHYAASKGWLKIVELL 133
               GW P+H AAS  NV + + L+  GA V        +TA        +G+ +  + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 134 ISRGAKI 140
                K+
Sbjct: 123 YGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 2e-04
 Identities = 4/35 (11%), Positives = 12/35 (34%)

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKACWLH 150
             L  ++ +G   +V+ +I      +  +      
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA 37

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.4 bits (140), Expect = 3e-12
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 5/144 (3%)

Query: 6   DQTIKDKDLFKAAETGDSSTFKSLSKQ----QLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           D   K   L +A +T D                   L+  ++ D T LH+A        +
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
            I+  + +++  ++    +G   +H      N   +++LL   A + + N+ G T L  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 122 ASKGWLKIVELLISRGA-KINSKD 144
                    ELL    + + NS  
Sbjct: 122 KRLKHEHCEELLTQALSGRFNSHV 145

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (122), Expect = 1e-09
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
               +H A    +  +VE+L+  GADV+ ++   +TA   +   G   + E+L
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 4e-05
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLH 150
           D G   L  AA  G    V +L++ GA   +        
Sbjct: 1   DLG-KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPL 38

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.3 bits (87), Expect = 8e-05
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
            +  AA  G    V +L++ GA       G
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLG 34

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (83), Expect = 3e-04
 Identities = 40/138 (28%), Positives = 55/138 (39%), Gaps = 31/138 (22%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVN---------------------------- 75
           D    L  AA  G  + V IL++                                     
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 76  -AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
            A  +    P+H AAS G+  IVE+LL  GADVN K+    TALH+A      ++VELLI
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 135 SRGAKINSKDKACW--LH 150
             GA ++++ K C     
Sbjct: 121 KYGADVHTQSKFCKTAFD 138

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (83), Expect = 3e-04
 Identities = 5/27 (18%), Positives = 14/27 (51%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEIL 64
           +  ++   +T   ++   G+ ++ EIL
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (79), Expect = 0.001
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           LH A    H EVVE+L+        V+   +        +   GN  + E+L
Sbjct: 104 LHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 3e-09
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           VN  D  G  PIH A   G+  +V  L    +D++ ++  G T L  A  +G   +V++L
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 134 IS 135
             
Sbjct: 153 QG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 9e-05
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLS 66
           L  R+    T L +A   G  ++V+IL  
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 5e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 84  PIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGW 126
            +  AA+ G+V  V  LL  +    +  N  G+TAL        
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST 48

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.001
 Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 114 GRTALHYAASKGWLKIV-ELLISRGAKINSKDKACWLH 150
               L  AA++G ++ V  LL       ++ ++     
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA 39

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 4e-08
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 30/123 (24%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANV----------------------------- 73
           +     L  AA+ G  E V  LL    + N                              
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 74  -VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132
              A       P+H AA  G +  + +L   GA +++++  GR  +  A   G   +   
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 133 LIS 135
           L +
Sbjct: 121 LRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 2e-05
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLH 150
           +     L  AA++G ++ V  L+  GA  N+ +      
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRP 39

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 6e-04
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS 66
           R+   R  + +A   GH +V   L +
Sbjct: 98  RDAWGRLPVDLAEELGHRDVARYLRA 123

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 5e-08
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKACWLH 150
             L  AA++G L+ +  L+     +N+++      
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTA 37

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-07
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           V  +N  G TA   A   G  ++V L+ + G
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-06
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
            + SAA+ G++  +  LL    +VN +N  GRTAL  
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV 40

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 4e-05
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
           V   + +G      A   G   +V ++ + G
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 5e-05
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLS 66
            RN    T   +A   G  EVV ++ +
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 5e-04
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86
          L  AA+ G  E +  LL    + N VNA +  G   + 
Sbjct: 5  LASAAARGDLEQLTSLL--QNNVN-VNAQNGFGRTALQ 39

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (85), Expect = 1e-04
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 8/123 (6%)

Query: 11  DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDES 70
           DK+   A + GD    K       +      N                  +EIL  +   
Sbjct: 3   DKEFMWALKNGDLDEVK-----DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 57

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
              +NA D+    P+ SA   G+V+ V++LLSKGAD  +K   G TAL    ++    I 
Sbjct: 58  GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQA---IK 114

Query: 131 ELL 133
            LL
Sbjct: 115 ALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.95
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.9
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.78
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.73

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.1e-31  Score=173.26  Aligned_cols=151  Identities=25%  Similarity=0.263  Sum_probs=135.3

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHh-------------------------------hhhccCCCCCCchHHH
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQL-------------------------------LKSLSLRNDDDRTLLH   50 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~-------------------------------~~~~~~~~~~g~~~l~   50 (156)
                      +++..|..|.||||.|+..|+.+++++++....                               +.+++.+|..|.||||
T Consensus        29 ~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~  108 (223)
T d1uoha_          29 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLH  108 (223)
T ss_dssp             GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             cCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhh
Confidence            467788899999999999999998888876431                               1245677889999999


Q ss_pred             HHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHH
Q 031607           51 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV  130 (156)
Q Consensus        51 ~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  130 (156)
                      +|+..++.+++++|++.+.+   ++.++..|.|++|+|+..++.+++++|...+.+++.++..|.|||+.|+..|+.+++
T Consensus       109 ~A~~~~~~e~~~~Ll~~g~d---~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v  185 (223)
T d1uoha_         109 YAASKNRHEIAVMLLEGGAN---PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA  185 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCC---CCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHH
Confidence            99999999999999998877   677888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCcccccccccccCCC
Q 031607          131 ELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus       131 ~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      ++|+++|++++.+|.+|+||||...
T Consensus       186 ~~LL~~Gad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         186 KLLVSQGASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             HHHHHTTCCSCCCCTTSCCHHHHCC
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            9999999999999999999998653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.5e-30  Score=165.44  Aligned_cols=143  Identities=27%  Similarity=0.322  Sum_probs=117.3

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc-----------------
Q 031607           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV-----------------   73 (156)
Q Consensus        11 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~-----------------   73 (156)
                      ++|||+||..|+.+.|+.|++.. +..++.+|.+|+||||+|+..|+.+++++|++.+.+...                 
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            36777777777777777777764 456777777777777777777777777777776543321                 


Q ss_pred             ---------------------------------------------------cccccCCCchHHHHHHhcCCHHHHHHHHH
Q 031607           74 ---------------------------------------------------VNAVDEEGWAPIHSAASIGNVTIVEMLLS  102 (156)
Q Consensus        74 ---------------------------------------------------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~  102 (156)
                                                                         ...++..|.|++|+|+..++.+++++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc
Confidence                                                               23456778999999999999999999999


Q ss_pred             cC-CCCccCcCCCCcHHHHHHHCCCHHHHHHHHH-cCCCCCcccccccccccCC
Q 031607          103 KG-ADVNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       103 ~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~~  154 (156)
                      .+ ..++.++..|.||||+|+..++.+++++|++ .|++++.+|..|+||||..
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A  213 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  213 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGC
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            86 6788999999999999999999999999997 5999999999999999965

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=5e-30  Score=170.95  Aligned_cols=144  Identities=22%  Similarity=0.264  Sum_probs=123.3

Q ss_pred             CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc----------------
Q 031607           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV----------------   73 (156)
Q Consensus        10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~----------------   73 (156)
                      +.|+|+.||..|+++.|++|+++|  ++++.+|.+|+||||+|+..|+.+++++|++.+.....                
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~G--advn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            457888888888888888888877  67778888888888888888888888888876543211                


Q ss_pred             --------------------------------------------------------------------------cccccC
Q 031607           74 --------------------------------------------------------------------------VNAVDE   79 (156)
Q Consensus        74 --------------------------------------------------------------------------~~~~~~   79 (156)
                                                                                                ....+.
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             ccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccC
Confidence                                                                                      122345


Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus        80 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      .|.|+|+.|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||...
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             CCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999999863

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4e-30  Score=168.53  Aligned_cols=79  Identities=28%  Similarity=0.357  Sum_probs=71.1

Q ss_pred             ccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccC-cCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        75 ~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      +.++..|.||||+|+..++.+++++|++.++..+.+ +..|.||||+|+..++.+++++|+++|++++.+|..|+||||.
T Consensus       152 n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~  231 (255)
T d1oy3d_         152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS  231 (255)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            345677899999999999999999999998877654 5679999999999999999999999999999999999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9e-29  Score=158.24  Aligned_cols=147  Identities=26%  Similarity=0.309  Sum_probs=129.7

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHH--hhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc-------------
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQ--LLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV-------------   73 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~--~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~-------------   73 (156)
                      .|+||||.|+..|++++++.|++..  .+.+++.+|..|+||||+|+..|+.+++++|++.+.....             
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            6999999999999999999998743  2367888999999999999999999999999987764322             


Q ss_pred             -------------------------------------------------------cccccCCCchHHHHHHhcCCHHHHH
Q 031607           74 -------------------------------------------------------VNAVDEEGWAPIHSAASIGNVTIVE   98 (156)
Q Consensus        74 -------------------------------------------------------~~~~~~~~~~~l~~a~~~~~~~~~~   98 (156)
                                                                             .......+.++++.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence                                                                   1122345788999999999999999


Q ss_pred             HHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607           99 MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                      ++++.+...+.++..|.||+++|+..|+.+++++|+++|++++.+|.+|.||||...
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.8e-29  Score=160.99  Aligned_cols=151  Identities=27%  Similarity=0.313  Sum_probs=135.0

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc---ccccc
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV---VNAVD   78 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~---~~~~~   78 (156)
                      ++|..+..|.||||+|+..|+.+++++|++.+  .+++.++..|.+||++|+..+..++++.++..+.....   .....
T Consensus        31 ~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g--~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  108 (221)
T d1iknd_          31 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  108 (221)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             CcccCCCCCCcccccccccccccccccccccc--ccccccccccccccccccccccccccchhhhhcccccccccccccc
Confidence            57888999999999999999999999999988  78889999999999999999999999999986544221   23345


Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHHcCCCCccCc-CCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      ..|.|+++.|+..++.+++++++..|..++..+ ..|.||+|+|++.|+.+++++|+++|++++.+|.+|+||||..
T Consensus       109 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A  185 (221)
T d1iknd_         109 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT  185 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGC
T ss_pred             cccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHH
Confidence            568899999999999999999999998887665 4689999999999999999999999999999999999999975

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.5e-29  Score=152.73  Aligned_cols=137  Identities=26%  Similarity=0.357  Sum_probs=125.7

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHh
Q 031607           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (156)
Q Consensus        11 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~   90 (156)
                      ...|+.|+..|+++.|++|++++ +.+++..|..|+||||+|+ .++.+++++|+..+.+   ++..+..+.++++.++.
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~---~~~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS---PNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhC-CCCCCccCCCCCccccccc-cccccccccccccccc---ccccccccccccccccc
Confidence            35699999999999999999975 4788899999999999986 4889999999998877   66777889999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .++.++++++++.+++++.++..|.|||++|++.|+.+++++|+ .|++++.+|.+|+||||.
T Consensus        78 ~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~  139 (156)
T d1bd8a_          78 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLEL  139 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHH
T ss_pred             cccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999887 789999999999999985

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.5e-28  Score=149.76  Aligned_cols=137  Identities=35%  Similarity=0.453  Sum_probs=125.3

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHh
Q 031607           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (156)
Q Consensus        11 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~   90 (156)
                      +|||+.|++.|+.++|++|++++  ++++ .+..|+||||+|+..++.+++..++.....   .......+.++++.++.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~g--a~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   76 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS---RDARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcC--CCcc-cccCCCcccccccccccccccccccccccc---ccccccccccccccccc
Confidence            58999999999999999999998  4554 688999999999999999999999877655   44556677889999999


Q ss_pred             cCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ..+.++++++...+++.+.++..|.|||++|+..|+.+++++|+++|++++.+|.+|+||||.
T Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~  139 (153)
T d1awcb_          77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDI  139 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=8.1e-29  Score=144.89  Aligned_cols=106  Identities=32%  Similarity=0.361  Sum_probs=85.3

Q ss_pred             chHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCC
Q 031607           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG  125 (156)
Q Consensus        46 ~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~  125 (156)
                      .|||++|++.|+.+++++|++.+.+   ++.++..|.||+|+|+..++.++++++++.|++++.++..|.||||+|+..|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d---~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED---VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC---CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc---cccccccccccccccccccccccccccccccceeeecccccccchhhhhhcC
Confidence            3678888888888888888877766   5667777888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHcCCCCCcccccccccccCC
Q 031607          126 WLKIVELLISRGAKINSKDKACWLHSIAP  154 (156)
Q Consensus       126 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~  154 (156)
                      +.+++++|+++|++++.+|..|.||||..
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            88888888888888888888888888765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-28  Score=149.47  Aligned_cols=136  Identities=31%  Similarity=0.440  Sum_probs=127.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhc
Q 031607           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (156)
Q Consensus        12 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~   91 (156)
                      ++||.|+..|++++|++|++++  .+++.+|..|+||||+|+ .++.+++++|++.+.+   ++.++..+.++++.++..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g--~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~---~~~~~~~~~~~l~~~~~~   76 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN---PDLKDRTGFAVIHDAARA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC--CCcCccCCcccccccccc-cccccccccccccccc---cccccccCcccccccccc
Confidence            7999999999999999999988  788999999999999885 7899999999999887   677788999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCC-CCCcccccccccccC
Q 031607           92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKACWLHSIA  153 (156)
Q Consensus        92 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~~~t~l~~  153 (156)
                      +..+.+++++..+..++..+..|.+|+++|+..+..+++++|+++++ +.+.+|..|+||||.
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~  139 (156)
T d1ihba_          77 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL  139 (156)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999876 889999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.8e-29  Score=146.63  Aligned_cols=121  Identities=23%  Similarity=0.296  Sum_probs=110.7

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc-hHHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHS   87 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~-~~l~~   87 (156)
                      ++.++||.|+..|++++|++|++++  .+++.++..|.||+|+|+ .|+.+++++|++.+.+   ++.++..+. +|||+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~g--ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~---~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE---PNCADPATLTRPVHD   75 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC---CCCCCTTTCCCHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcC--Cccccccccccccccccc-cccccccccccccccc---ccccccccccccccc
Confidence            4668999999999999999999987  788899999999999774 7999999999999887   666666665 69999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHH
Q 031607           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS  135 (156)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  135 (156)
                      |+..++.+++++|++.|++++.+|..|.||+++|+..|+.+++++|+.
T Consensus        76 A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          76 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=7.4e-28  Score=157.62  Aligned_cols=147  Identities=24%  Similarity=0.218  Sum_probs=127.2

Q ss_pred             ccccccCcHHHHHHHhcCCHHHHHHHHHHHhh-hhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL-KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~-~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      ++-+..|.||||.|++.|+.+++++|++.+.. ..++.++..|.||||+||..|+.+++++|++.+.+   ++.++..|.
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~---i~~~d~~g~   79 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG---VLVAERGGH   79 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTSC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc---ccccccccc
Confidence            34467899999999999999999999998732 33778899999999999999999999999999887   778889999


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCC-----------------------------------------------CccCcCCCC
Q 031607           83 APIHSAASIGNVTIVEMLLSKGAD-----------------------------------------------VNLKNDGGR  115 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~~~~~-----------------------------------------------~~~~~~~~~  115 (156)
                      |||++|+..++.+++++|++.+..                                               ++.++..|.
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            999999999999999988764321                                               123456789


Q ss_pred             cHHHHHHHCCCHHHHHHHHHcCCCCCcc-cccccccccC
Q 031607          116 TALHYAASKGWLKIVELLISRGAKINSK-DKACWLHSIA  153 (156)
Q Consensus       116 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~~~~t~l~~  153 (156)
                      ||||+|+..++.+++++|++++++.+.. +..|.||||.
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~  198 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL  198 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             ccccccccccccccccchhcccccccccccccccccccc
Confidence            9999999999999999999999999864 6789999984

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.7e-28  Score=162.03  Aligned_cols=146  Identities=16%  Similarity=0.165  Sum_probs=116.8

Q ss_pred             Ccccc-cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCC-------hHHHHHHHhhcccccc
Q 031607            2 DMDID-QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH-------PEVVEILLSVDESANV   73 (156)
Q Consensus         2 ~~~~~-~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~-------~~~~~~ll~~~~~~~~   73 (156)
                      |+|.+ |..|.||||+|+..|+.++|+.|++++  ++++.+|..|+||||+||..++       .++++++..   .   
T Consensus        98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~g--ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~---  169 (301)
T d1sw6a_          98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---C---  169 (301)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---G---
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---h---
Confidence            56665 788999999999999999999999988  7899999999999999998764       234444432   2   


Q ss_pred             cccccCCCchHHHHHHhcCC----HHH--------HHHHHHcCCC-----------------------------------
Q 031607           74 VNAVDEEGWAPIHSAASIGN----VTI--------VEMLLSKGAD-----------------------------------  106 (156)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~----~~~--------~~~l~~~~~~-----------------------------------  106 (156)
                      ....+..|+|+||.++..+.    ...        +.++...+..                                   
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence            45667889999998875432    222        2333333221                                   


Q ss_pred             --CccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607          107 --VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG  155 (156)
Q Consensus       107 --~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  155 (156)
                        ++.+|..|.||||+|++.|+.+++++|+++|++++.+|..|.|||+...
T Consensus       250 ~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         250 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             cCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence              5778889999999999999999999999999999999999999998764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-27  Score=153.12  Aligned_cols=143  Identities=34%  Similarity=0.391  Sum_probs=109.6

Q ss_pred             CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc----------------
Q 031607           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV----------------   73 (156)
Q Consensus        10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~----------------   73 (156)
                      +++.++.++..|+++.|+.++... +..++.+|..|+||||+||..|+.+++++++........                
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccc
Confidence            567899999999999999999876 578889999999999999999999888888876543211                


Q ss_pred             --------------cccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCC
Q 031607           74 --------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK  139 (156)
Q Consensus        74 --------------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~  139 (156)
                                    ++.++..|.||||+|+..++.+++++|+++|++++.++..|.+|+++|+..+..+++++|.+.+.+
T Consensus        82 ~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~  161 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS  161 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccce
Confidence                          334566667777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCcccccccccccC
Q 031607          140 INSKDKACWLHSIA  153 (156)
Q Consensus       140 ~~~~~~~~~t~l~~  153 (156)
                      ++.+|..|+||||.
T Consensus       162 i~~~d~~g~TpL~~  175 (223)
T d1uoha_         162 TNIQDTEGNTPLHL  175 (223)
T ss_dssp             SCCCCTTCCCHHHH
T ss_pred             eeeccCCCCceecc
Confidence            77777777777764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=3e-27  Score=156.19  Aligned_cols=150  Identities=22%  Similarity=0.314  Sum_probs=130.2

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccc---------
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN---------   72 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~---------   72 (156)
                      |+|..+..|.||||.|+..|+.++|++|+++|  ++++.++..|.||+++|+..++.+++.++........         
T Consensus        66 dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G--ad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  143 (277)
T d2fo1e1          66 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAG--ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  143 (277)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             CccccCCCCCeeeccccccccccccccccccc--cccccccccccccccchhhhcchhhhhhhhhccccccccccccccc
Confidence            78889999999999999999999999999998  7888999999999999999999888887764321000         


Q ss_pred             -----------------------------------ccccccCCCchHHHHHHhcCCHHHHHHHH-HcCCCCccCcCCCCc
Q 031607           73 -----------------------------------VVNAVDEEGWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRT  116 (156)
Q Consensus        73 -----------------------------------~~~~~~~~~~~~l~~a~~~~~~~~~~~l~-~~~~~~~~~~~~~~~  116 (156)
                                                         .....+..|.|+|+.++..++.+++++++ ..+.+.+.++..|.|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~t  223 (277)
T d2fo1e1         144 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT  223 (277)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             chhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCC
Confidence                                               01233456889999999999999998766 558888899999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          117 ALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       117 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      ||++|++.|+.+++++|+++|++++.+|..|.||||.
T Consensus       224 pL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~  260 (277)
T d2fo1e1         224 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL  260 (277)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHH
Confidence            9999999999999999999999999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-27  Score=141.38  Aligned_cols=122  Identities=30%  Similarity=0.433  Sum_probs=109.9

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHh
Q 031607           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (156)
Q Consensus        11 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~   90 (156)
                      .+.|+.|+..|+.++|++|++++  .+++.+|..|+||||+|+..++.+++++|++.+.+   ++.++..|+||||+|+.
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g--~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~---~~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTT--SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcC--CCccccccccccccccccccccccccccccccccc---cccccccCcccccccch
Confidence            47899999999999999999988  78999999999999999999999999999999877   77889999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccCcC-CCCcHHHHH--HHCCCHHHHHHHHHcC
Q 031607           91 IGNVTIVEMLLSKGADVNLKND-GGRTALHYA--ASKGWLKIVELLISRG  137 (156)
Q Consensus        91 ~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~a--~~~~~~~~~~~Ll~~g  137 (156)
                      .++.+++++|+++|++++..+. .+.+|+.++  ...|+.+++++|+..+
T Consensus        77 ~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          77 CNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            9999999999999999987765 577887665  4668899999998753

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2.4e-28  Score=142.85  Aligned_cols=107  Identities=36%  Similarity=0.502  Sum_probs=101.6

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHh
Q 031607           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (156)
Q Consensus        11 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~   90 (156)
                      +|||++|++.|++++|++|++++  .+++.++..|+||||+|+..++.++++++++.+.+   ++.++..|.||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g--~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d---in~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTT--CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT---TTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhh--hccccccccccccccccccccccccccccccccce---eeecccccccchhhhhh
Confidence            57999999999999999999988  78899999999999999999999999999999887   77889999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccCcCCCCcHHHHHH
Q 031607           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (156)
Q Consensus        91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~  122 (156)
                      .++.+++++|++.|++++.+|..|.||+++|.
T Consensus        78 ~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          78 EGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             cCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            99999999999999999999999999999873

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-26  Score=140.68  Aligned_cols=128  Identities=24%  Similarity=0.325  Sum_probs=118.1

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      |+|..+..|.||||.|+. |+.+++++|++.+  .+++..+..|.+|+++++..++.++++++++.+.+   ++.++..|
T Consensus        28 ~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~n~~~~~~  101 (156)
T d1bd8a_          28 HPDALNRFGKTALQVMMF-GSTAIALELLKQG--ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD---VNVPDGTG  101 (156)
T ss_dssp             CTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTS
T ss_pred             CCCccCCCCCcccccccc-ccccccccccccc--ccccccccccccccccccccccccccccccccccc---cccccCCC
Confidence            678889999999999875 8899999999987  67888888999999999999999999999999877   67788899


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHc
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR  136 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  136 (156)
                      .||||+|+..++.+++++|+ .|++++.++..|.|||++|+..|+.+++++|++|
T Consensus       102 ~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         102 ALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             Ceeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999999887 6789999999999999999999999999999986

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=2.1e-26  Score=146.63  Aligned_cols=147  Identities=25%  Similarity=0.301  Sum_probs=126.7

Q ss_pred             Cccc-ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHH--------------------
Q 031607            2 DMDI-DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEV--------------------   60 (156)
Q Consensus         2 ~~~~-~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~--------------------   60 (156)
                      |+|. .+..|.||||+||..|+.+++++|++.+  ..++.++..+.++++.++..+....                    
T Consensus        14 din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g--~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (209)
T d1ot8a_          14 ELNATMDKTGETSLHLAARFARADAAKRLLDAG--ADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGT   91 (209)
T ss_dssp             HHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCC
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhc--ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4555 4788999999999999999999999987  6777888888888888887665433                    


Q ss_pred             --------------HHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCC
Q 031607           61 --------------VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW  126 (156)
Q Consensus        61 --------------~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~  126 (156)
                                    .+.|...+.+   ++.++..|.|+++.++..+...+++.+++.+.+++.+|..|.||||+|+..|+
T Consensus        92 ~~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~  168 (209)
T d1ot8a_          92 TPLILAARLAIEGMVEDLITADAD---INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS  168 (209)
T ss_dssp             CHHHHHHHTTCTTHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             ccccccccccchhhhhhhhhhccc---ccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccH
Confidence                          3333333333   45677889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCcccccccccccC
Q 031607          127 LKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       127 ~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .+++++|+++|++++.+|..|.||||.
T Consensus       169 ~~~v~~Ll~~gad~n~~d~~g~Tpl~~  195 (209)
T d1ot8a_         169 YEASKALLDNFANREITDHMDRLPRDV  195 (209)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            999999999999999999999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.3e-26  Score=139.98  Aligned_cols=129  Identities=21%  Similarity=0.232  Sum_probs=111.4

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhh----hccCCCCCCchHHHHHHHc---CChHHHHHHHhhcccccccccccCCC
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLK----SLSLRNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~----~~~~~~~~g~~~l~~A~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      .....|+.|++.+++..+..++..+...    .....+..|+||||+|+..   +..+++++|++++.+   ++.++..|
T Consensus         5 ~~l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---in~~d~~g   81 (154)
T d1dcqa1           5 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKG   81 (154)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---TTCCCTTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC---hhhhhhhh
Confidence            3455788999999999999998876211    1222366799999999975   578999999999887   78889999


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI  140 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~  140 (156)
                      .||||+|+..++.+++++|+++|++++.+|..|.||+++|+..|+.+++++|++.++..
T Consensus        82 ~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          82 STALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999976533

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.2e-26  Score=157.39  Aligned_cols=144  Identities=31%  Similarity=0.400  Sum_probs=125.4

Q ss_pred             cccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchH
Q 031607            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP   84 (156)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+..+.++++.|+..++.+++++++...  ...+..+..|.+|++.|+..++.+++++|++.+.+   ++..+..+.|+
T Consensus       226 ~~~~~~~t~l~~a~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~---~~~~~~~~~t~  300 (408)
T d1n11a_         226 AESVQGVTPLHLAAQEGHAEMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTP  300 (408)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCSSCCCH
T ss_pred             ccCCCCCCHHHHHHHhCcHhHhhhhhccc--cccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc---ccccccccccc
Confidence            44566788899999999999988888876  56667788889999999999999999999988877   66677788899


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus        85 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      |+.++..++.++++++++.|++++.+|..|.||||.|++.|+.+++++|+++|++++.+|.+|.||||.
T Consensus       301 L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~  369 (408)
T d1n11a_         301 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI  369 (408)
T ss_dssp             HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred             chhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.8e-25  Score=135.47  Aligned_cols=130  Identities=26%  Similarity=0.386  Sum_probs=120.6

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      |+|..+..|.||||.|+ .|+.+++++|++++  .+++..+..|.++++.++..+..+.++.++..+..   .+..+..|
T Consensus        26 d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~--a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~   99 (156)
T d1ihba_          26 NVNAQNGFGRTALQVMK-LGNPEIARRLLLRG--ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD---VNIEDNEG   99 (156)
T ss_dssp             CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CcCccCCcccccccccc-cccccccccccccc--cccccccccCccccccccccccccccccccccccc---cccccccc
Confidence            78889999999999875 78999999999988  78888999999999999999999999999988877   66778899


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCC-CCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC
Q 031607           82 WAPIHSAASIGNVTIVEMLLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g  137 (156)
                      .+++++|+..++.+++++|+++++ +.+.++..|.||||+|++.++.+++++|+++|
T Consensus       100 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         100 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999999875 78999999999999999999999999999987

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-24  Score=150.52  Aligned_cols=150  Identities=29%  Similarity=0.451  Sum_probs=103.0

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc--------
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--------   73 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~--------   73 (156)
                      |+|..+..|.||||.|+..|+.+++++|+++|  ++++.++..|+||||+|+..|+.+++++|+........        
T Consensus        25 ~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g--adi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~  102 (408)
T d1n11a_          25 SPNVSNVKVETPLHMAARAGHTEVAKYLLQNK--AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP  102 (408)
T ss_dssp             CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT--CCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccch
Confidence            45556666666666666666666666666665  45566666666666666666666666666543322110        


Q ss_pred             ----------------------cccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHH
Q 031607           74 ----------------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE  131 (156)
Q Consensus        74 ----------------------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  131 (156)
                                            ....+..+.++++.|+..++.+++++|++.+.+++..+..+.+||++|+..++.++++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~  182 (408)
T d1n11a_         103 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK  182 (408)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHH
Confidence                                  1223345566666677777777777888888888888888888888888888888888


Q ss_pred             HHHHcCCCCCcccccccccccC
Q 031607          132 LLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       132 ~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      +|+++|++++..+..|+||+|.
T Consensus       183 ~Ll~~g~~~~~~~~~~~t~l~~  204 (408)
T d1n11a_         183 LLLPRGGSPHSPAWNGYTPLHI  204 (408)
T ss_dssp             HHGGGTCCSCCCCTTCCCHHHH
T ss_pred             HHHhcCCcccccCCCCCCcchh
Confidence            8888888888888888888763

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=144.21  Aligned_cols=136  Identities=26%  Similarity=0.296  Sum_probs=120.8

Q ss_pred             ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcC----ChHHHHHHHhhcccccccccccCCC
Q 031607            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG----HPEVVEILLSVDESANVVNAVDEEG   81 (156)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~----~~~~~~~ll~~~~~~~~~~~~~~~~   81 (156)
                      ....|.||||.|++.|+.+++++|+++. +.+++..+..|.++...+...+    ...++++|++++.+   ++.++..|
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~---~n~~~~~g  219 (285)
T d1wdya_         144 LRKGGATALMDAAEKGHVEVLKILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERG  219 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHTS-CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---SSCCCTTS
T ss_pred             hcccCchHHHHHHHcCCHHHHHHHHhcc-CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC---CCccCCCC
Confidence            3456889999999999999999999874 4788888999998877766543    35689999999887   67788899


Q ss_pred             chHHHHHHhcCCHHHHHHHHHc-CCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccc
Q 031607           82 WAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK  145 (156)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  145 (156)
                      .||||.|+..++.+++++|++. |++++.+|.+|.||||+|+..++.+++++|+++||+++.+|.
T Consensus       220 ~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            9999999999999999999975 899999999999999999999999999999999999999873

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.2e-25  Score=129.97  Aligned_cols=104  Identities=24%  Similarity=0.333  Sum_probs=96.3

Q ss_pred             chHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCC
Q 031607           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG  125 (156)
Q Consensus        46 ~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~  125 (156)
                      .++|+.||..|+.+++++|++++.+   ++.++..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d---~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDD---PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSS---CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCC---ccccccccccccccccccccccccccccccccccccccccCcccccccchhh
Confidence            4689999999999999999999887   7788999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCcccc-ccccccc
Q 031607          126 WLKIVELLISRGAKINSKDK-ACWLHSI  152 (156)
Q Consensus       126 ~~~~~~~Ll~~g~~~~~~~~-~~~t~l~  152 (156)
                      +.+++++|+++|++++.++. .+.||+.
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~~  106 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAAD  106 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHH
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHHH
Confidence            99999999999999998774 4777653

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.5e-24  Score=142.53  Aligned_cols=143  Identities=25%  Similarity=0.374  Sum_probs=114.6

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCC-CCCchHHHHHHHcCChHHHHHHHhhcccccc--------------
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHPEVVEILLSVDESANV--------------   73 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~-~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~--------------   73 (156)
                      .+++.|+.|++.|++++|++|+++|  .+++.++ ..|+||||+|+..|+.+++++|++.+.....              
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G--~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~   81 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCC--CCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhh
Confidence            4678999999999999999999988  6776654 5799999999999999999999876543211              


Q ss_pred             -----------------------------------------------------------cccccCCCchHHHHHHhcCCH
Q 031607           74 -----------------------------------------------------------VNAVDEEGWAPIHSAASIGNV   94 (156)
Q Consensus        74 -----------------------------------------------------------~~~~~~~~~~~l~~a~~~~~~   94 (156)
                                                                                 .......|.||||+|+..++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T d1wdya_          82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             cCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH
Confidence                                                                       011223478899999988887


Q ss_pred             HHHHHHHHc--------------------------------------CCCCccCcCCCCcHHHHHHHCCCHHHHHHHHH-
Q 031607           95 TIVEMLLSK--------------------------------------GADVNLKNDGGRTALHYAASKGWLKIVELLIS-  135 (156)
Q Consensus        95 ~~~~~l~~~--------------------------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-  135 (156)
                      +++++|++.                                      |++++.++..|.||||.|+..++.+++++|++ 
T Consensus       162 ~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            777766643                                      33445566789999999999999999999998 


Q ss_pred             cCCCCCcccccccccccC
Q 031607          136 RGAKINSKDKACWLHSIA  153 (156)
Q Consensus       136 ~g~~~~~~~~~~~t~l~~  153 (156)
                      .|++++.+|.+|.||||.
T Consensus       242 ~g~din~~d~~G~TpL~~  259 (285)
T d1wdya_         242 EHIEINDTDSDGKTALLL  259 (285)
T ss_dssp             SSCCTTCCCTTSCCHHHH
T ss_pred             CCCCCcCCCCCCCCHHHH
Confidence            599999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.5e-25  Score=130.05  Aligned_cols=106  Identities=28%  Similarity=0.374  Sum_probs=97.7

Q ss_pred             CCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCC-cHHHHHH
Q 031607           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR-TALHYAA  122 (156)
Q Consensus        44 ~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~l~~a~  122 (156)
                      .+.++||+|+..|+.+++++|++.+.+   ++.++..|.|+++.|+ .++.+++++|++.|++++.++..+. +|+|+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad---~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA   77 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCC---TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCc---cccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            356899999999999999999999887   7788899999999664 7999999999999999999988776 6999999


Q ss_pred             HCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          123 SKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       123 ~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      +.|+.+++++|+++|++++.+|..|+||||.
T Consensus        78 ~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~  108 (125)
T d1bi7b_          78 REGFLDTLVVLHRAGARLDVRDAWGRLPVDL  108 (125)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHH
T ss_pred             ccccccccccccccccccccccCCCCCHHHH
Confidence            9999999999999999999999999999985

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=3.6e-27  Score=160.84  Aligned_cols=141  Identities=16%  Similarity=0.186  Sum_probs=113.5

Q ss_pred             ccccccCcHHHHHHHhcCCHHHHHH---HHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccc--c
Q 031607            4 DIDQTIKDKDLFKAAETGDSSTFKS---LSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAV--D   78 (156)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~v~~---ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~--~   78 (156)
                      +.++..|.|+|+.|++.|+.+.++.   |++.+  ++++..+.+|+||||+||+.|+.+++++|++.+.+   ++..  +
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~--~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~---~~~~~~~  158 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSD--EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT---EIMAMIQ  158 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CC--SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT---THHHHHS
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC--CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---ccccccc
Confidence            4556688999999999999888766   56655  78899999999999999999999999999999876   4443  3


Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHHcCCCCc---cCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccc
Q 031607           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVN---LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWL  149 (156)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t  149 (156)
                      ..|.||||+|+..|+.+++++|++.|+...   ..+..+.+|++.|+..|+.+++++|+++|++++..+..+.+
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~  232 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE  232 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTT
T ss_pred             cCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHH
Confidence            468999999999999999999999987643   33345667888899999999999999999877655444333

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.8e-23  Score=126.10  Aligned_cols=123  Identities=33%  Similarity=0.389  Sum_probs=112.4

Q ss_pred             ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (156)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+..|.||||+|+..++.+.+..++...  ......+..+.++++.++...+.+++++++..+.+   .+.++..|.|||
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~g~T~L  104 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAG--VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTAL  104 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTSCCHH
T ss_pred             cccCCCcccccccccccccccccccccc--ccccccccccccccccccccccceeeecccccCCc---cccccccCchHH
Confidence            5778999999999999999999988876  44455677788999999999999999999988877   667889999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHH
Q 031607           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL  133 (156)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  133 (156)
                      |+|+..++.+++++|++.|++++.+|..|.||+++|+..|+.+++++|
T Consensus       105 ~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         105 HWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            999999999999999999999999999999999999999999999876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-24  Score=139.14  Aligned_cols=142  Identities=29%  Similarity=0.324  Sum_probs=120.5

Q ss_pred             cCcHHHHHHHhcCCHHHHHHHHHHH--hhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607            9 IKDKDLFKAAETGDSSTFKSLSKQQ--LLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (156)
Q Consensus         9 ~~~~~l~~a~~~~~~~~v~~ll~~~--~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (156)
                      .|.||||.|+..|+.+.+.++++..  .+.+++.+|.+|+||||+||..++.+++++|++.+.+   ++.++..|.+|++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d---~~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD---PELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC---SCCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccc---ccccccccccccc
Confidence            4899999999999976666554421  1267889999999999999999999999999999887   6778899999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCc------cCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccc-ccccccccC
Q 031607           87 SAASIGNVTIVEMLLSKGADVN------LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KACWLHSIA  153 (156)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~  153 (156)
                      .++..++.++++.++..+....      .....|.||++.|+..++.+++++|+..|+.++..+ .+|.||||.
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~  151 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL  151 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccc
Confidence            9999999999999998765432      233457899999999999999999999999998765 679999985

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.8e-23  Score=133.66  Aligned_cols=130  Identities=22%  Similarity=0.299  Sum_probs=115.9

Q ss_pred             cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (156)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (156)
                      ....+..+.++++.++..++.++++.|++.+  ......+..|+||||+|+..++.+++++|+..+...  ++.++..|.
T Consensus        98 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~--in~~d~~g~  173 (229)
T d1ixva_          98 LNKITNQGVTCLHLAVGKKWFEVSQFLIENG--ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA--VNWQDKQGW  173 (229)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCC--SCCCCTTSC
T ss_pred             ccccccccccccccccccchhhhhhhhhhhc--ccccccCCCCCCccchhhhccccccccccccccccc--ccccccccC
Confidence            3445567889999999999999999999987  677778999999999999999999999999876432  677889999


Q ss_pred             hHHHHHHhcCCHHHHHHHHH-cCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCC
Q 031607           83 APIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK  139 (156)
Q Consensus        83 ~~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~  139 (156)
                      ||||+|+..++.+++++|++ .|++++.+|..|.|||++|+.   .+++++|+++|+|
T Consensus       174 TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             CchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            99999999999999999996 599999999999999999974   5899999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=1.1e-23  Score=138.94  Aligned_cols=148  Identities=20%  Similarity=0.247  Sum_probs=122.1

Q ss_pred             ccccc-ccCcHHHHHHHhcCCHHHHHHHHHHHh------hhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccc
Q 031607            3 MDIDQ-TIKDKDLFKAAETGDSSTFKSLSKQQL------LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVN   75 (156)
Q Consensus         3 ~~~~~-~~~~~~l~~a~~~~~~~~v~~ll~~~~------~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~   75 (156)
                      +|..+ ..|.||||+|+..|+.++|+.|+....      +++++.+|..|+||||+|+..|+.+++++|+++|.+   ++
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad---~n  101 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---PT  101 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SC
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccc---cc
Confidence            44444 469999999999999999999876532      257889999999999999999999999999999887   77


Q ss_pred             cccCCCchHHHHHHhcCCHHHHHHHHHcCC---C--------------------------------------------Cc
Q 031607           76 AVDEEGWAPIHSAASIGNVTIVEMLLSKGA---D--------------------------------------------VN  108 (156)
Q Consensus        76 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~---~--------------------------------------------~~  108 (156)
                      .++..|.|+++.|+..++.+++.++...+.   .                                            .+
T Consensus       102 ~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (277)
T d2fo1e1         102 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  181 (277)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccc
Confidence            788999999999999999888776654310   0                                            11


Q ss_pred             cCcCCCCcHHHHHHHCCCHHHHHHHH-HcCCCCCcccccccccccC
Q 031607          109 LKNDGGRTALHYAASKGWLKIVELLI-SRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       109 ~~~~~~~~~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~~~t~l~~  153 (156)
                      ..+..|.||+++++..++.+++++++ ..+.+.+.+|..|+||||.
T Consensus       182 ~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~  227 (277)
T d2fo1e1         182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML  227 (277)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH
T ss_pred             ccccCCCCccccccccccccccccccccccccccccCCCCCCHHHH
Confidence            22345789999999999999988754 5789999999999999985

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=2e-24  Score=147.22  Aligned_cols=150  Identities=15%  Similarity=0.079  Sum_probs=113.1

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCC--CCCCchHHHHHHHcCChHHHHHHHhhcccccccccccC
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLR--NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE   79 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~--~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~   79 (156)
                      ++|..+..|.||||.|++.|+.++|++|++.+  ++++..  +.+|+||||+||..|+.+++++|++.+......+..+.
T Consensus       118 ~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g--~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~  195 (346)
T d2ajaa1         118 IVKVIQAENYQAFRLAAENGHLHVLNRLCELA--PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE  195 (346)
T ss_dssp             SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSC--TTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHH
T ss_pred             cccccCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccC
Confidence            57888899999999999999999999999988  344443  45699999999999999999999998765433344455


Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHcCCCCccCc---------------------------------C--------------
Q 031607           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKN---------------------------------D--------------  112 (156)
Q Consensus        80 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~---------------------------------~--------------  112 (156)
                      .+.|+++.|+..|+.+++++|++.|++++..+                                 .              
T Consensus       196 ~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~  275 (346)
T d2ajaa1         196 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ  275 (346)
T ss_dssp             HHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHH
T ss_pred             CCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccc
Confidence            67788888999999999999988654321100                                 0              


Q ss_pred             --CCCcHHHHHHHCCCHHHHHHHHHcCCC-----CCcccccccccccC
Q 031607          113 --GGRTALHYAASKGWLKIVELLISRGAK-----INSKDKACWLHSIA  153 (156)
Q Consensus       113 --~~~~~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~~~t~l~~  153 (156)
                        .+.++++.+...+..+++++|++.+..     ....+.+|.||||.
T Consensus       276 ~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lhl  323 (346)
T d2ajaa1         276 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL  323 (346)
T ss_dssp             HHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHH
T ss_pred             cchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHH
Confidence              012456667677888999999987754     33455678999985

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=7.8e-21  Score=120.49  Aligned_cols=121  Identities=24%  Similarity=0.260  Sum_probs=106.7

Q ss_pred             ccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHH
Q 031607            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (156)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~   87 (156)
                      ..+.+..+.+.........+.|...+  .+++.++..|+||+++++..+..++++.++..+..   ++..+..|.||||+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~L~~~~--~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~---~~~~d~~g~TpL~~  162 (209)
T d1ot8a_          88 HDGTTPLILAARLAIEGMVEDLITAD--ADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN---RDAQDDKDETPLFL  162 (209)
T ss_dssp             TTCCCHHHHHHHTTCTTHHHHHHHTT--CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHH
T ss_pred             ccccccccccccccchhhhhhhhhhc--ccccccCCCCCCcchhhcccCcceeeeeecccccc---ccccccccccccch
Confidence            34556666677777777777777665  56778889999999999999999999999998877   67788999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHH
Q 031607           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL  133 (156)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  133 (156)
                      |+..|+.+++++|++.|++++.+|..|.|||++|++.|+.+++++|
T Consensus       163 A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         163 AAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999999999999999999986

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=4.3e-21  Score=116.41  Aligned_cols=106  Identities=17%  Similarity=0.131  Sum_probs=91.4

Q ss_pred             HHHHHHHcCChHHHHHHHhhcccccc---cccccCCCchHHHHHHhc---CCHHHHHHHHHcCCCCccCcCCCCcHHHHH
Q 031607           48 LLHVAASCGHPEVVEILLSVDESANV---VNAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (156)
Q Consensus        48 ~l~~A~~~~~~~~~~~ll~~~~~~~~---~~~~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a  121 (156)
                      .|..|++.+....+..++..+.+...   ....+..|.||||+|+..   +..+++++|++.|++++.++..|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            45678889999888888877654221   223366789999999974   678999999999999999999999999999


Q ss_pred             HHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          122 ASKGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       122 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      +..|+.+++++|+++|++++.+|..|+||||.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~  120 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDI  120 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccccccccccccccCccccccCCCCCCHHHH
Confidence            99999999999999999999999999999984

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.2e-21  Score=124.72  Aligned_cols=127  Identities=27%  Similarity=0.283  Sum_probs=108.3

Q ss_pred             CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhh---------------------------------------------
Q 031607            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLK---------------------------------------------   36 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~---------------------------------------------   36 (156)
                      |+|.++..|.||||.|+..|+.++++.|++.+...                                             
T Consensus        32 ~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (228)
T d1k1aa_          32 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL  111 (228)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSC
T ss_pred             CCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhccccccccccccccccc
Confidence            67888999999999999999999999998854211                                             


Q ss_pred             ------------------------hccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcC
Q 031607           37 ------------------------SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (156)
Q Consensus        37 ------------------------~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~   92 (156)
                                              ........+.+++++|+..+...++++++..+..   ...++..|.|||++|+..+
T Consensus       112 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~---~~~~d~~g~t~L~~A~~~g  188 (228)
T d1k1aa_         112 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN---VNAQMYSGSSALHSASGRG  188 (228)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHHT
T ss_pred             cccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc---cccccccCcchHHHHHHcC
Confidence                                    0112234577888888888888999999887766   6677889999999999999


Q ss_pred             CHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHH
Q 031607           93 NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE  131 (156)
Q Consensus        93 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  131 (156)
                      +.+++++|+++|++++.+|..|.|||++|++.|+.++++
T Consensus       189 ~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         189 LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            999999999999999999999999999999999888764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.78  E-value=1.1e-18  Score=115.67  Aligned_cols=107  Identities=33%  Similarity=0.447  Sum_probs=100.5

Q ss_pred             CCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHH
Q 031607           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (156)
Q Consensus        44 ~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~  123 (156)
                      .+.|+|+.||..|+.+++++|++.|.+   ++.++..|.||||+|+..|+.+++++|++.+.+....+..+.+|++.++.
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gad---vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGAD---INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCC---TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCC---CCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccc
Confidence            356999999999999999999999987   77889999999999999999999999999999988888899999999999


Q ss_pred             CCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607          124 KGWLKIVELLISRGAKINSKDKACWLHSIA  153 (156)
Q Consensus       124 ~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  153 (156)
                      .++.++++.|+++|+..+..+..+.+|++.
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDI  145 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccchhhcccccCcccccccccCcccccc
Confidence            999999999999999999999999998764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=2.5e-18  Score=114.78  Aligned_cols=120  Identities=26%  Similarity=0.376  Sum_probs=88.6

Q ss_pred             CcccccccCcHHHHHHHhcCCH---HHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCC----hHH--------HHHHHh
Q 031607            2 DMDIDQTIKDKDLFKAAETGDS---STFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH----PEV--------VEILLS   66 (156)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~---~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~----~~~--------~~~ll~   66 (156)
                      |++..+..|.||||.|+..++.   ..+..+++.. .......|..|+||||+++..+.    ..+        +.++..
T Consensus       132 d~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l-~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~  210 (301)
T d1sw6a_         132 NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL-YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK  210 (301)
T ss_dssp             CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH-GGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCcccccHHHHhhhcccchhhhhHHHHHHHH-hhhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHh
Confidence            6788899999999999986642   2233333332 23456678889999999886543    222        233333


Q ss_pred             hcccc----------------------------------cccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcC
Q 031607           67 VDESA----------------------------------NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND  112 (156)
Q Consensus        67 ~~~~~----------------------------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~  112 (156)
                      .+...                                  ..++.+|..|+||||+|++.++.+++++|++.|++++.+|.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~  290 (301)
T d1sw6a_         211 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK  290 (301)
T ss_dssp             GGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            22211                                  01466788999999999999999999999999999999999


Q ss_pred             CCCcHHHHHH
Q 031607          113 GGRTALHYAA  122 (156)
Q Consensus       113 ~~~~~l~~a~  122 (156)
                      .|.|||++|+
T Consensus       291 ~G~Tpl~~A~  300 (301)
T d1sw6a_         291 SGLRPVDFGA  300 (301)
T ss_dssp             TSCCGGGGTC
T ss_pred             CCCCHHHHcC
Confidence            9999999885