Citrus Sinensis ID: 031608

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHccccccccccccccccccccccccEEEEcccccccccccccEEEEEccccccccEEEEEEcccccHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEHcccccHHHHHHHccccHHccccccEcccccEEEEEcccccEEEEcccccccccccEEEEEEccccccccEEEEEccccHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHcHHHHHHHHHHccccEEEEEEcccccHHHHHcccEEEEEEc
Coil and Loop (DISEMBL)
MTALAAKSSILYQELHRRegkqqfqqpwssgsssclllqknsaffwvdtasrsksarrdvrvealwpdlsrptsvelepindsdhLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDlvkrgnisvsiqi
Flexible Loop (DISEMBL)
mtalaakssilYQELHRREGKqqfqqpwssgssSCLLLQKNSAFFWVDTasrsksarrdvrvealwpdlsrptsvelepinDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNkvskdlvkrgnisvsiqi
Low Complexity Region (SEG)
MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI
Disordered region (IsUnstruct)
**********************************CLLLQKNSAFFWVDTA*********VRVEALWPD***************DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRG********
Disordered Region (DISOPRED)
*******SSILYQELHRR******************LLQKNS*****************************PTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI
Disordered Region (DISEMBL)
MTALAAKSSILYQELH****************SSCLLLQKNSAFFWVDT*********DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI
Disordered Region (DISPRO)
*TALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
Q9FG36	210	Thioredoxin-like 3-1, chl	no	no	0.916	0.680	0.503	2e-35
Q6Z7L3	193	Thioredoxin-like 3-1, chl	no	no	0.570	0.461	0.576	4e-23
Q8VZT6	192	Thioredoxin-like 3-2, chl	no	no	0.512	0.416	0.587	8e-23
P34723	106	Thioredoxin OS=Penicilliu	no	no	0.358	0.528	0.350	1e-05
Q8IFW4	157	Thioredoxin-T OS=Drosophi	yes	no	0.448	0.445	0.315	0.0001
O48737	179	Thioredoxin M1, chloropla	no	no	0.506	0.441	0.303	0.0002
Q9SEU8	186	Thioredoxin M2, chloropla	no	no	0.5	0.419	0.295	0.0002
Q9SEU6	193	Thioredoxin M4, chloropla	no	no	0.506	0.409	0.289	0.0002
P52230	110	Thioredoxin OS=Streptomyc	no	no	0.423	0.6	0.289	0.0003
A2YIW7	122	Thioredoxin H-type OS=Ory	N/A	no	0.435	0.557	0.285	0.0005

>sp|Q9FG36|TRL31_ARATH Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 108/155 (69%), Gaps = 12/155 (7%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSAR--- 57
           M ALA+   +L ++ H   G ++ +Q W   S   L L+K   F  V   S  K  R   
Sbjct: 26  MAALASNPQMLTRQAH---GNKK-EQLWRKES---LNLEKKCGFC-VSVYSNEKLGRSHM 77

Query: 58  -RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLK 116
            ++ R++A W ++++PT++E+EPIN+ + LD +L  A++LSQPI+I+WMASWCRKCIYLK
Sbjct: 78  EKEWRLKAFWSNIAQPTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLK 137

Query: 117 PKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           PKLEKLAAE++ + KFYYVDVNKV + LVKRGNIS
Sbjct: 138 PKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNIS 172

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z7L3|TRL31_ORYSJ Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774100 PE=2 SV=2

 Score =  107 bits (266), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 70/92 (76%), Gaps = 3/92 (3%)

Query: 60  VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL 119
           +R EA + D+S+P  VE+E I+  + LD  L  + E  QPI+IDWMASWCRKCIYLKP+L
Sbjct: 67  LRAEAYFWDVSKP--VEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRL 124

Query: 120 EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           EK+A EF   ++FY+VDVNKV + +VKRGNI+
Sbjct: 125 EKIAGEF-PGVRFYFVDVNKVPQTVVKRGNIT 155

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VZT6|TRL32_ARATH Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1

 Score =  105 bits (263), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 59/80 (73%)

Query: 72  PTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLK 131
           P SVEL PI    H DQ++  AQ+L + ++I WMA+WCRKCIYLKPKLEKLAAEF  +L+
Sbjct: 73  PVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLR 132

Query: 132 FYYVDVNKVSKDLVKRGNIS 151
           FY+VDVN V   LV R  ++
Sbjct: 133 FYHVDVNAVPYRLVSRAGVT 152

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Arabidopsis thaliana (taxid: 3702)

>sp|P34723|THIO_PENCH Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 92  RAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRG 148
           +  + + P+++D+ A+WC  C  + P LEKL +E  T ++FY VDV+++S+     G
Sbjct: 15  KVTDATGPVVVDFHATWCGPCKAIAPALEKL-SETHTGIQFYKVDVDELSEVAASNG 70

Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions.

Penicillium chrysogenum (taxid: 5076)

>sp|Q8IFW4|THIOT_DROME Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 79  PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138
           P+ + D LDQ L+ A++  + ++ID+ A WC  C  + PKL++LA E+  ++    V+V+
Sbjct: 4   PVRNKDDLDQQLILAED--KLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVD 61

Query: 139 KVSKDLVKRGNIS 151
           + ++D+    N++
Sbjct: 62  E-NEDITVEYNVN 73

Probably participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions. Its tissue specificity suggests a regulatory role in the germline.

Drosophila melanogaster (taxid: 7227)

>sp|O48737|TRXM1_ARATH Thioredoxin M1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 51  SRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCR 110
           SR    RR V  EA      + T+  +  +NDS   D ++L+A E   P+ +D+ A WC 
Sbjct: 56  SRVSRLRRGVICEA------QDTATGIPVVNDS-TWDSLVLKADE---PVFVDFWAPWCG 105

Query: 111 KCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
            C  + P + +LA ++  + KFY ++ ++
Sbjct: 106 PCKMIDPIVNELAQKYAGQFKFYKLNTDE 134

Thiol-disulfide oxidoreductase involved in the redox regulation of enzymes of both reductive pentose phosphate pathway (Calvin-Benson cycle) and oxidative pentose phosphate pathway. Under reducing conditions, activates the glyceraldehyde-3-phosphate dehydrogenase and the phosphoribulokinase, and inhibits. the glucose-6-phosphate dehydrogenase. Activates NADP-malate dehydrogenase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEU8|TRXM2_ARATH Thioredoxin M2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 52  RSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRK 111
           R    RR V  EA      + T+ +++ +NDS   D ++L+A   + P+++D+ A WC  
Sbjct: 63  RVSRLRRAVVCEA------QETTTDIQVVNDST-WDSLVLKA---TGPVVVDFWAPWCGP 112

Query: 112 CIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           C  + P +  LA  +  K+KFY ++ ++
Sbjct: 113 CKMIDPLVNDLAQHYTGKIKFYKLNTDE 140

Thiol-disulfide oxidoreductase that may participate in various redox reactions. May activate NADP-malate dehydrogenase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEU6|TRXM4_ARATH Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 74  SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFY 133
           +VE+  ++DS+   ++L    E   P+L+++ A WC  C  + P +++LA +F  K KFY
Sbjct: 85  AVEVPNLSDSEWQTKVL----ESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFY 140

Query: 134 YVDVNKVSKDLVKRGNISVSIQI 156
            ++ ++      + G  SV   I
Sbjct: 141 KINTDESPNTANRYGIRSVPTVI 163

Thiol-disulfide oxidoreductase involved in the redox regulation of enzyme of the oxidative pentose phosphate pathway. Under reducing conditions, inhibits the glucose-6-phosphate dehydrogenase.

Arabidopsis thaliana (taxid: 3702)

>sp|P52230|THIO_STRCO Thioredoxin OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=trxA PE=1 SV=4

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  +Q +L+     +P+L+D+ A+WC  C  + P LE +AAE+  K++   +++++    
Sbjct: 11  DSFEQDVLKND---KPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGT 67

Query: 144 LVKRGNISV 152
             K G +S+
Sbjct: 68  AAKYGVMSI 76

Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions.

Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)

>sp|A2YIW7|TRXH_ORYSI Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1

 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 81  NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140
           ++ D  D  + +A+E  + ++ID+ ASWC  C ++ P   + A +F   + F  VDV+++
Sbjct: 12  HNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDEL 70

Query: 141 SKDLVKRGNI 150
            K++ ++ N+
Sbjct: 71  -KEVAEKYNV 79

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The H form is known to activate a number of cytosolic enzymes.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
255587723	190	electron transporter, putative [Ricinus	0.974	0.8	0.662	7e-50
224138110	194	predicted protein [Populus trichocarpa]	0.961	0.773	0.611	4e-46
359482166	179	PREDICTED: thioredoxin-like 3-1, chlorop	0.935	0.815	0.577	2e-43
225441487	185	PREDICTED: thioredoxin-like 3-1, chlorop	0.929	0.783	0.581	2e-43
388500344	176	unknown [Medicago truncatula]	0.948	0.840	0.598	2e-42
357509991	171	Thioredoxin-like protein [Medicago trunc	0.948	0.865	0.598	2e-42
357509989	181	Thioredoxin-like protein [Medicago trunc	0.955	0.823	0.594	2e-42
388496236	176	unknown [Medicago truncatula]	0.948	0.840	0.598	2e-42
357509993	187	Thioredoxin-like protein [Medicago trunc	0.948	0.791	0.598	3e-42
356572120	182	PREDICTED: thioredoxin-like 3-1, chlorop	0.961	0.824	0.555	1e-40

>gi|255587723|ref|XP_002534371.1| electron transporter, putative [Ricinus communis] gi|223525411|gb|EEF28009.1| electron transporter, putative [Ricinus communis]

 Score =  201 bits (512), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 104/157 (66%), Positives = 127/157 (80%), Gaps = 5/157 (3%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQ-KNSAFFWV----DTASRSKS 55
           M++LAA S ILY+E++ +  +QQ  Q WSS  S CLLLQ +NS  + +     T S  K 
Sbjct: 1   MSSLAANSHILYREVYNQRDQQQQHQLWSSSGSCCLLLQQRNSGCYNLFDCKKTRSFKKI 60

Query: 56  ARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYL 115
           ++RD+RVEA WPD++RPTS+E+EPINDSD LDQILL+AQELSQP+LIDWMA+WCRKCIYL
Sbjct: 61  SKRDLRVEAFWPDMTRPTSIEMEPINDSDQLDQILLKAQELSQPVLIDWMAAWCRKCIYL 120

Query: 116 KPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISV 152
           KPKLEKLA EFDTK+K Y VDVNKVS+ LVKRGNIS+
Sbjct: 121 KPKLEKLAFEFDTKIKIYSVDVNKVSQSLVKRGNISL 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138110|ref|XP_002322732.1| predicted protein [Populus trichocarpa] gi|222867362|gb|EEF04493.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 96/157 (61%), Positives = 120/157 (76%), Gaps = 7/157 (4%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGS-SSCLLLQKNSAFF--WVDTASRS---K 54
           M+ LAA   +LY+E+      QQ QQ WS G   S LLL + ++F   W D  ++    K
Sbjct: 1   MSVLAANPHVLYREVQYHNKDQQ-QQLWSGGGVGSSLLLSQRTSFGCSWFDGRNKDLCKK 59

Query: 55  SARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIY 114
           +++RD++V A WP ++RPTSVE+EPI+DS HLD+ILL+A ELSQPI+IDWMASWCRKCIY
Sbjct: 60  NSKRDLKVAASWPGMTRPTSVEMEPIDDSHHLDKILLQAHELSQPIIIDWMASWCRKCIY 119

Query: 115 LKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           LKPKLEKLAAE+DTK+KFY VDVNKV + LVKRGNIS
Sbjct: 120 LKPKLEKLAAEYDTKIKFYCVDVNKVPQALVKRGNIS 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482166|ref|XP_003632721.1| PREDICTED: thioredoxin-like 3-1, chloroplastic isoform 2 [Vitis vinifera]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/154 (57%), Positives = 112/154 (72%), Gaps = 8/154 (5%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDT--ASRSKSARR 58
           M+ LAA + I+Y+E+  R+ + Q      SG  SCL   ++  F  VD       K+ +R
Sbjct: 1   MSILAANTHIVYREVLLRDPQNQL-----SGGGSCLFWSRSPGFG-VDGRRGEWRKTKKR 54

Query: 59  DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK 118
           D RVEA WPD++RP  +E++PI D D LDQIL RAQEL QPI+IDWMA+WCRKCIYLKPK
Sbjct: 55  DFRVEAFWPDMTRPNVIEMQPIKDCDQLDQILARAQELPQPIIIDWMAAWCRKCIYLKPK 114

Query: 119 LEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISV 152
           LEKLAAE+DTK+KFY VDVN VS+ LVKRGNI++
Sbjct: 115 LEKLAAEYDTKIKFYSVDVNNVSQALVKRGNITL 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441487|ref|XP_002275794.1| PREDICTED: thioredoxin-like 3-1, chloroplastic isoform 1 [Vitis vinifera]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/153 (58%), Positives = 111/153 (72%), Gaps = 8/153 (5%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDT--ASRSKSARR 58
           M+ LAA + I+Y+E+  R+ + Q      SG  SCL   ++  F  VD       K+ +R
Sbjct: 1   MSILAANTHIVYREVLLRDPQNQL-----SGGGSCLFWSRSPGFG-VDGRRGEWRKTKKR 54

Query: 59  DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK 118
           D RVEA WPD++RP  +E++PI D D LDQIL RAQEL QPI+IDWMA+WCRKCIYLKPK
Sbjct: 55  DFRVEAFWPDMTRPNVIEMQPIKDCDQLDQILARAQELPQPIIIDWMAAWCRKCIYLKPK 114

Query: 119 LEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           LEKLAAE+DTK+KFY VDVN VS+ LVKRGNI+
Sbjct: 115 LEKLAAEYDTKIKFYSVDVNNVSQALVKRGNIT 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500344|gb|AFK38238.1| unknown [Medicago truncatula]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 115/152 (75%), Gaps = 4/152 (2%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARR-D 59
           M+ +   S  LY+E++ R+ +Q   Q ++SG  S  LL + S F  +    + K  RR +
Sbjct: 1   MSIIGTYSHFLYKEVYHRD-EQCIPQCFASGRDS--LLCRKSCFGNIIGIEKQKKIRRKN 57

Query: 60  VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL 119
           +RVEA+WPDLSRP+SVE+E I+DS+ LDQIL+ AQ+ S+PILIDWMA+WCRKCIYLKPKL
Sbjct: 58  LRVEAMWPDLSRPSSVEMEAIHDSEQLDQILVHAQQNSEPILIDWMAAWCRKCIYLKPKL 117

Query: 120 EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           EKLAAEFDTK KFYYVDVNKV + LVKRG IS
Sbjct: 118 EKLAAEFDTKAKFYYVDVNKVPQTLVKRGKIS 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509991|ref|XP_003625284.1| Thioredoxin-like protein [Medicago truncatula] gi|355500299|gb|AES81502.1| Thioredoxin-like protein [Medicago truncatula]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 115/152 (75%), Gaps = 4/152 (2%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARR-D 59
           M+ +   S  LY+E++ R+ +Q   Q ++SG  S  LL + S F  +    + K  RR +
Sbjct: 1   MSIIGTYSHFLYKEVYHRD-EQCIPQCFASGRDS--LLCRKSCFGNIIRIEKQKKIRRKN 57

Query: 60  VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL 119
           +RVEA+WPDLSRP+SVE+E I+DS+ LDQIL+ AQ+ S+PILIDWMA+WCRKCIYLKPKL
Sbjct: 58  LRVEAMWPDLSRPSSVEMEAIHDSEQLDQILVHAQQNSEPILIDWMAAWCRKCIYLKPKL 117

Query: 120 EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           EKLAAEFDTK KFYYVDVNKV + LVKRG IS
Sbjct: 118 EKLAAEFDTKAKFYYVDVNKVPQTLVKRGKIS 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509989|ref|XP_003625283.1| Thioredoxin-like protein [Medicago truncatula] gi|217071534|gb|ACJ84127.1| unknown [Medicago truncatula] gi|355500298|gb|AES81501.1| Thioredoxin-like protein [Medicago truncatula]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/153 (59%), Positives = 116/153 (75%), Gaps = 4/153 (2%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARR-D 59
           M+ +   S  LY+E++ R+ +Q   Q ++SG  S  LL + S F  +    + K  RR +
Sbjct: 1   MSIIGTYSHFLYKEVYHRD-EQCIPQCFASGRDS--LLCRKSCFGNIIRIEKQKKIRRKN 57

Query: 60  VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL 119
           +RVEA+WPDLSRP+SVE+E I+DS+ LDQIL+ AQ+ S+PILIDWMA+WCRKCIYLKPKL
Sbjct: 58  LRVEAMWPDLSRPSSVEMEAIHDSEQLDQILVHAQQNSEPILIDWMAAWCRKCIYLKPKL 117

Query: 120 EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISV 152
           EKLAAEFDTK KFYYVDVNKV + LVKRG IS+
Sbjct: 118 EKLAAEFDTKAKFYYVDVNKVPQTLVKRGKISL 150

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496236|gb|AFK36184.1| unknown [Medicago truncatula]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 115/152 (75%), Gaps = 4/152 (2%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARR-D 59
           M+ +   S  LY+E++ R+ +Q   Q ++SG  S  LL + S F  +    + K  RR +
Sbjct: 1   MSIIGTYSHFLYKEVYHRD-EQCIPQCFASGRDS--LLCRKSCFGNIIRIEKQKKIRRKN 57

Query: 60  VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL 119
           +RVEA+WPDLSRP+SVE+E I+DS+ LDQIL+ AQ+ S+PILIDWMA+WCRKCIYLKPKL
Sbjct: 58  LRVEAMWPDLSRPSSVEMEAIHDSEQLDQILVHAQQNSEPILIDWMAAWCRKCIYLKPKL 117

Query: 120 EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           EKLAAEFDTK KFYYVDVNKV + LVKRG IS
Sbjct: 118 EKLAAEFDTKAKFYYVDVNKVPQTLVKRGKIS 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509993|ref|XP_003625285.1| Thioredoxin-like protein [Medicago truncatula] gi|355500300|gb|AES81503.1| Thioredoxin-like protein [Medicago truncatula]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 115/152 (75%), Gaps = 4/152 (2%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARR-D 59
           M+ +   S  LY+E++ R+ +Q   Q ++SG  S  LL + S F  +    + K  RR +
Sbjct: 1   MSIIGTYSHFLYKEVYHRD-EQCIPQCFASGRDS--LLCRKSCFGNIIRIEKQKKIRRKN 57

Query: 60  VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL 119
           +RVEA+WPDLSRP+SVE+E I+DS+ LDQIL+ AQ+ S+PILIDWMA+WCRKCIYLKPKL
Sbjct: 58  LRVEAMWPDLSRPSSVEMEAIHDSEQLDQILVHAQQNSEPILIDWMAAWCRKCIYLKPKL 117

Query: 120 EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           EKLAAEFDTK KFYYVDVNKV + LVKRG IS
Sbjct: 118 EKLAAEFDTKAKFYYVDVNKVPQTLVKRGKIS 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572120|ref|XP_003554218.1| PREDICTED: thioredoxin-like 3-1, chloroplastic-like isoform 1 [Glycine max]

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 109/153 (71%), Gaps = 3/153 (1%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDT-ASRSKSARRD 59
           M+ + A S  LY E+++++  QQ  Q   SG       + +    WV +  S  K  RR+
Sbjct: 1   MSVIGAYSHFLYGEVYQKD--QQCPQYLVSGRGYLFSHKSSCGSIWVGSRKSEGKIKRRN 58

Query: 60  VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL 119
           +RVEA+WPDLSRP  +E+E I+DS+ LDQIL+ AQ+ SQPILIDWMA+WCRKCIYLKPKL
Sbjct: 59  LRVEAMWPDLSRPNELEMEEISDSEQLDQILVHAQQNSQPILIDWMATWCRKCIYLKPKL 118

Query: 120 EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISV 152
           EKLA E+  K KFY+VDVNKV + LVKRGNIS+
Sbjct: 119 EKLAPEYHNKAKFYFVDVNKVPQTLVKRGNISL 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2170174	214	WCRKC1 "WCRKC thioredoxin 1" [	0.923	0.672	0.506	1.7e-34
TAIR|locus:2146693	192	WCRKC2 "WCRKC thioredoxin 2" [	0.512	0.416	0.587	1.9e-21
FB|FBgn0029752	157	TrxT "Thioredoxin T" [Drosophi	0.448	0.445	0.315	6.1e-07
WB|WBGene00021548	107	trx-4 [Caenorhabditis elegans	0.371	0.542	0.366	6.1e-07
UNIPROTKB|Q0D840	122	TRXH "Thioredoxin H1" [Oryza s	0.435	0.557	0.285	1.5e-05
TAIR|locus:2102043	126	AT3G53220 [Arabidopsis thalian	0.403	0.5	0.363	1.9e-05
TAIR|locus:2128756	186	ATHM2 [Arabidopsis thaliana (t	0.423	0.354	0.285	2.8e-05
SGD|S000003441	104	TRX2 "Cytoplasmic thioredoxin	0.429	0.644	0.277	3e-05
CGD|CAL0000819	103	TRX1 [Candida albicans (taxid:	0.378	0.572	0.328	6.3e-05
UNIPROTKB|Q5ACN1	103	TRX1 "Thioredoxin" [Candida al	0.378	0.572	0.328	6.3e-05

TAIR|locus:2170174 WCRKC1 "WCRKC thioredoxin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 79/156 (50%), Positives = 109/156 (69%)

Query:     1 MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSAR--- 57
             M ALA+   +L ++ H   G ++ +Q W   S   L L+K   F  V   S  K  R   
Sbjct:    26 MAALASNPQMLTRQAH---GNKK-EQLWRKES---LNLEKKCGFC-VSVYSNEKLGRSHM 77

Query:    58 -RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLK 116
              ++ R++A W ++++PT++E+EPIN+ + LD +L  A++LSQPI+I+WMASWCRKCIYLK
Sbjct:    78 EKEWRLKAFWSNIAQPTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLK 137

Query:   117 PKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISV 152
             PKLEKLAAE++ + KFYYVDVNKV + LVKRGNISV
Sbjct:   138 PKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISV 173

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2146693 WCRKC2 "WCRKC thioredoxin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 47/80 (58%), Positives = 59/80 (73%)

Query:    72 PTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLK 131
             P SVEL PI    H DQ++  AQ+L + ++I WMA+WCRKCIYLKPKLEKLAAEF  +L+
Sbjct:    73 PVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLR 132

Query:   132 FYYVDVNKVSKDLVKRGNIS 151
             FY+VDVN V   LV R  ++
Sbjct:   133 FYHVDVNAVPYRLVSRAGVT 152

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

FB|FBgn0029752 TrxT "Thioredoxin T" [Drosophila melanogaster (taxid:7227)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 23/73 (31%), Positives = 46/73 (63%)

Query:    79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138
             P+ + D LDQ L+ A++  + ++ID+ A WC  C  + PKL++LA E+  ++    V+V+
Sbjct:     4 PVRNKDDLDQQLILAED--KLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVD 61

Query:   139 KVSKDLVKRGNIS 151
             + ++D+    N++
Sbjct:    62 E-NEDITVEYNVN 73

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=NAS

GO:0000806 "Y chromosome" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=NAS

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006457 "protein folding" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

WB|WBGene00021548 trx-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query:    80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
             I D D    I   A++ +QP+++ + ASWC  C  +KP++E+LAAE   +L    +DV++
Sbjct:     5 IKDDDEFKTIF--AEKKTQPVILFFTASWCGPCQMIKPRVEELAAEHKDRLSILKIDVDE 62

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q0D840 TRXH "Thioredoxin H1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 20/70 (28%), Positives = 42/70 (60%)

Query:    81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140
             ++ D  D  + +A+E  + ++ID+ ASWC  C ++ P   + A +F   + F  VDV+++
Sbjct:    12 HNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDEL 70

Query:   141 SKDLVKRGNI 150
              K++ ++ N+
Sbjct:    71 -KEVAEKYNV 79

GO:0004857 "enzyme inhibitor activity" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IDA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA;TAS

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

TAIR|locus:2102043 AT3G53220 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query:    74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFY 133
             +V++ P ND   L  IL   +    P +I++ ASWC  C  + P   KL+  F +KLKF 
Sbjct:    22 NVKIAP-NDQSFLT-ILDDIKSSKSPAVINYGASWCGVCSQILPAFRKLSNSF-SKLKFV 78

Query:   134 YVDVNK 139
             Y D+++
Sbjct:    79 YADIDE 84

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2128756 ATHM2 [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 20/70 (28%), Positives = 43/70 (61%)

Query:    70 SRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
             ++ T+ +++ +NDS   D ++L+A   + P+++D+ A WC  C  + P +  LA  +  K
Sbjct:    75 AQETTTDIQVVNDSTW-DSLVLKA---TGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGK 130

Query:   130 LKFYYVDVNK 139
             +KFY ++ ++
Sbjct:   131 IKFYKLNTDE 140

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IGI

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

SGD|S000003441 TRX2 "Cytoplasmic thioredoxin isoenzyme" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 20/72 (27%), Positives = 40/72 (55%)

Query:    80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
             +  +   D  L    +L   +++D+ A+WC  C  + P +EK A ++ +   FY +DV++
Sbjct:     5 LKSASEYDSALASGDKL---VVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDE 60

Query:   140 VSKDLVKRGNIS 151
             VS D+ ++  +S
Sbjct:    61 VS-DVAQKAEVS 71

GO:0000324 "fungal-type vacuole" evidence=IPI

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0080058 "protein deglutathionylation" evidence=IGI;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000011 "vacuole inheritance" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

GO:0045454 "cell redox homeostasis" evidence=IEA;TAS

GO:0042144 "vacuole fusion, non-autophagic" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0000103 "sulfate assimilation" evidence=IGI

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

CGD|CAL0000819 TRX1 [Candida albicans (taxid:5476)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query:    88 QILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR 147
             Q LL+   L   +++D+ A+WC  C  + P LEK   E+ + +KF  +DV+++   L + 
Sbjct:    12 QTLLKENNL---VIVDFFATWCGPCKMIAPLLEKFQNEY-SNIKFLKIDVDQLGS-LAQE 66

Query:   148 GNIS 151
              N+S
Sbjct:    67 YNVS 70

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900429 "negative regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0000324 "fungal-type vacuole" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0034614 "cellular response to reactive oxygen species" evidence=IEA

GO:0006275 "regulation of DNA replication" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0080058 "protein deglutathionylation" evidence=IEA

GO:0000011 "vacuole inheritance" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q5ACN1 TRX1 "Thioredoxin" [Candida albicans SC5314 (taxid:237561)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query:    88 QILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR 147
             Q LL+   L   +++D+ A+WC  C  + P LEK   E+ + +KF  +DV+++   L + 
Sbjct:    12 QTLLKENNL---VIVDFFATWCGPCKMIAPLLEKFQNEY-SNIKFLKIDVDQLGS-LAQE 66

Query:   148 GNIS 151
              N+S
Sbjct:    67 YNVS 70

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900429 "negative regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00160522	hypothetical protein (194 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.7034.1	SubName- Full=Putative uncharacterized protein; (145 aa)			•						0.503
	PtrTrxh5	SubName- Full=Putative uncharacterized protein; (140 aa)			•						0.479
	PtrTrxh3	SubName- Full=Putative uncharacterized protein; (140 aa)			•						0.461
	estExt_fgenesh4_pm.C_LG_VII0364	hypothetical protein (260 aa)			•				•		0.438
	gw1.125.218.1	hypothetical protein (127 aa)			•						0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	9e-11
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	2e-08
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	4e-08
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	1e-07
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	5e-06
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	3e-05
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	1e-04
PRK00293	571	PRK00293, dipZ, thiol:disulfide interchange protei	7e-04
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	0.001
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	0.002
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	0.002
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	0.002
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	0.002
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	0.002
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	0.004

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 54.9 bits (133), Expect = 9e-11
 Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           ++P+++D+ A WC  C  + P LE+LA E+  K+KF  VDV++ + +L +   + 
Sbjct: 10  AKPVVVDFWAPWCGPCKAIAPVLEELAEEYP-KVKFVKVDVDE-NPELAEEYGVR 62

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
            +P+L+D+ A WC  C  L P+ EKLA E+   +KF  VD ++ + DL     + 
Sbjct: 18  DKPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVDADE-NPDLASEYGVR 71

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 48.7 bits (115), Expect = 4e-08
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 72  PTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLK 131
            T+   E ++ +      L       +P+L+D+ A WC  C    P LE+LA E+   ++
Sbjct: 12  ATAASFEELDGAPLSLSELK-----GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVE 66

Query: 132 FYYVDVNKVSKDLVKR 147
              V+V+  + DL   
Sbjct: 67  VVAVNVDDENPDLAAE 82

Length = 127

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK 142
           P+L+D+ A WC  C  + P LE+LA E++ K+KF  ++V++   
Sbjct: 16  PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD 59

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 42.6 bits (100), Expect = 5e-06
 Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           +++D+ A WC  C  + P  E+ + E+ TK+ F  VDV+++S ++ ++ NI+
Sbjct: 21  VIVDFYAEWCGPCKRIAPFYEECSKEY-TKMVFVKVDVDELS-EVAEKENIT 70

Length = 98

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           + +++  +Q ++++     P+L+D+ A WC  C  L P LEKLAAE+  K K   V+ + 
Sbjct: 28  VTEAN-FEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA 85

Length = 304

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 78  EPIN-DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136
           E IN   + LD++L    +   P++ID+ A WC  C    P  E +AAE   K++F  V+
Sbjct: 36  EVINATGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVN 91

Length = 139

>gnl|CDD|234717 PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 72  PTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKC 112
              +  + I     LDQ L  A+   +P+++D  A WC  C
Sbjct: 449 QAHLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVAC 489

Length = 571

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           D  D  +L+A       L+D+ A WC  C  + P L+++A E+  KL    +++++
Sbjct: 11  DSFDTDVLKADGAI---LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 63

Length = 109

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 95  ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           E  + IL+ + +  C  C  LKP L K+  EFD  + F  +D+++
Sbjct: 11  ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE 55

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGNIS 151
           S+ +L+++ A WC  C  L P+ EKLA E     K     V+   + DL     + 
Sbjct: 15  SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVR 70

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 87  DQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
             +    Q    P+++D+ A        L P LE+LA E+  +     V+ 
Sbjct: 5   QVLQESTQ---VPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNC 52

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 75  VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKF 132
           VEL   N    +           + +L+++ A WC  C  L P+ EKLAA F  +  +  
Sbjct: 3   VELTDSNFDKVVGDD-------KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVI 55

Query: 133 YYVDVNKVSKDLVKRGNIS 151
             VD ++ +KDL K+  +S
Sbjct: 56  AKVDADEANKDLAKKYGVS 74

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136
           L+++ A WC  C  LKP+  K A E D  ++   VD
Sbjct: 22  LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVD 57

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 82  DSDHL-DQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYY--VDVN 138
           D  HL D+   +  +  + +L+ + A WC  C  +KP+  K A E     K     VD  
Sbjct: 1   DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT 60

Query: 139 KVSKDLVK-RGNIS 151
           K   D +K   N+ 
Sbjct: 61  KPEHDALKEEYNVK 74

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.81
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.81
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.79
PHA02278	103	thioredoxin-like protein	99.77
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.77
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.76
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.76
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.75
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.75
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.74
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.73
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.73
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.7
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.7
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.7
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.69
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.68
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.68
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.68
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.67
PTZ00051	98	thioredoxin; Provisional	99.66
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.65
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.65
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.65
PRK09381	109	trxA thioredoxin; Provisional	99.65
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.64
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.64
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.64
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.64
PRK10996	139	thioredoxin 2; Provisional	99.62
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.62
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.61
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.61
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.6
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.6
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.59
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.59
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.58
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.58
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.58
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.57
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.56
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.56
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.55
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.55
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.54
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.52
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.5
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.48
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.45
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.42
PLN02309	457	5'-adenylylsulfate reductase	99.42
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.39
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.39
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.39
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.39
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.39
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.37
PHA02125	75	thioredoxin-like protein	99.37
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.37
PTZ00102	477	disulphide isomerase; Provisional	99.35
PTZ00102	477	disulphide isomerase; Provisional	99.35
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.34
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.31
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.3
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.3
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.28
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.28
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.27
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.27
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.27
PTZ00062	204	glutaredoxin; Provisional	99.26
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.26
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.26
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.26
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.22
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.22
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.2
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.18
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.16
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.15
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.15
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.12
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.11
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.11
PTZ00056	199	glutathione peroxidase; Provisional	99.1
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.08
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.07
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.05
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.03
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.03
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.01
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.01
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.0
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.98
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.97
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.97
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.97
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.97
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.92
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.9
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.89
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.88
PLN02412	167	probable glutathione peroxidase	98.87
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.87
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.85
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.84
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.8
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.74
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.73
smart00594	122	UAS UAS domain.	98.72
PTZ00256	183	glutathione peroxidase; Provisional	98.69
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.68
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.66
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.64
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.58
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.58
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.57
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.55
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.54
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.52
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.51
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.49
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.45
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.44
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.44
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.4
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.39
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.38
PRK13191	215	putative peroxiredoxin; Provisional	98.34
PRK15000	200	peroxidase; Provisional	98.32
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.31
PRK13190	202	putative peroxiredoxin; Provisional	98.3
PRK13599	215	putative peroxiredoxin; Provisional	98.29
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.28
PTZ00137	261	2-Cys peroxiredoxin; Provisional	98.22
PRK13189	222	peroxiredoxin; Provisional	98.2
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.19
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	98.14
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.07
PTZ00253	199	tryparedoxin peroxidase; Provisional	98.03
PF13728	215	TraF: F plasmid transfer operon protein	98.01
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	97.99
PRK11200	85	grxA glutaredoxin 1; Provisional	97.92
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	97.86
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.81
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.78
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.7
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.66
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.6
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.59
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.53
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	97.52
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.51
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	97.51
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.46
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	97.45
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.34
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	97.34
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	97.26
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.23
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.23
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	97.17
KOG1672	211	consensus ATP binding protein [Posttranslational m	97.16
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	97.15
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.14
PRK10329	81	glutaredoxin-like protein; Provisional	97.05
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	97.03
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	97.01
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	97.01
PHA03050	108	glutaredoxin; Provisional	96.99
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.95
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.78
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	96.73
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	96.73
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	96.72
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	96.69
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	96.68
COG1331	667	Highly conserved protein containing a thioredoxin	96.37
COG2143	182	Thioredoxin-related protein [Posttranslational mod	96.32
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	96.31
PRK10638	83	glutaredoxin 3; Provisional	96.3
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	96.3
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	96.28
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	96.27
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.26
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.11
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	95.67
PRK10824	115	glutaredoxin-4; Provisional	95.38
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	95.16
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	94.99
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	94.97
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	94.82
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	94.8
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	94.38
PTZ00062	204	glutaredoxin; Provisional	94.31
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	94.02
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	93.92
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	93.74
KOG3170	240	consensus Conserved phosducin-like protein [Signal	93.54
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	93.03
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	92.91
PHA03075	123	glutaredoxin-like protein; Provisional	92.26
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	91.69
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	91.6
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	91.53
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	89.21
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	89.2
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	88.98
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	88.06
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	87.94
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	87.76
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	86.92
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	85.07
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	84.58
PRK12559	131	transcriptional regulator Spx; Provisional	82.63
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	82.52
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	82.43
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	80.67
COG3019	149	Predicted metal-binding protein [General function	80.56
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	80.55

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=4.5e-20  Score=134.92  Aligned_cols=76  Identities=28%  Similarity=0.524  Sum_probs=69.9

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ...+.+.++|++.+.   +++.||+|+|||+||+||+.+.|.+++++++|.+.+.|++||.|++++++.+|+|.++|+-
T Consensus        44 ~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtv  119 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTV  119 (150)
T ss_pred             cccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEE
Confidence            445667778888886   6899999999999999999999999999999998999999999999999999999999974

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.81  E-value=1e-19  Score=128.59  Aligned_cols=72  Identities=19%  Similarity=0.283  Sum_probs=64.4

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI  156 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~  156 (156)
                      .++|++.+..  +.++++||+|||+|||||+.+.|.++++++++++.+.|++||+|++++++.+|+|.++|+.+
T Consensus         2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~   73 (114)
T cd02954           2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVM   73 (114)
T ss_pred             HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence            3567777753  36889999999999999999999999999999877899999999999999999999999753

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=2.6e-19  Score=125.12  Aligned_cols=73  Identities=26%  Similarity=0.505  Sum_probs=63.9

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI  156 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~  156 (156)
                      ..+++.....+...+++++|+|||+|||||+.+.|.+++|+.+|++ +.|++||+|+.++++++++|.++|+++
T Consensus         7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~   79 (106)
T KOG0907|consen    7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFV   79 (106)
T ss_pred             hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEE
Confidence            3355555554445679999999999999999999999999999997 999999999999999999999999863

>PHA02278 thioredoxin-like protein

Probab=99.77  E-value=1.6e-18  Score=120.59  Aligned_cols=72  Identities=17%  Similarity=0.226  Sum_probs=63.2

Q ss_pred             CChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC----HHHHHHhCCccceecC
Q 031608           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV----SKDLVKRGNISVSIQI  156 (156)
Q Consensus        81 ~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~----~~l~~~~~i~sv~~~~  156 (156)
                      ++.++|++.+    ..+++++|+|||+|||||+.+.|.++++++++..++.|+++|+|.+    ++++++|+|.++|+.|
T Consensus         2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i   77 (103)
T PHA02278          2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI   77 (103)
T ss_pred             CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence            3567888888    4799999999999999999999999999988655578999999975    7899999999999864

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.77  E-value=2.6e-18  Score=118.94  Aligned_cols=72  Identities=14%  Similarity=0.252  Sum_probs=63.7

Q ss_pred             ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH---HHHHHhCCccceecC
Q 031608           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNISVSIQI  156 (156)
Q Consensus        82 ~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~---~l~~~~~i~sv~~~~  156 (156)
                      +.++|++++..  ..++++||+|||+||++|+.+.|.|++++++++ ++.|+.||+|+++   +++++|+|.++|+.+
T Consensus         2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~   76 (103)
T cd02985           2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN-DVVFLLVNGDENDSTMELCRREKIIEVPHFL   76 (103)
T ss_pred             CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CCEEEEEECCCChHHHHHHHHcCCCcCCEEE
Confidence            45788999864  358999999999999999999999999999994 6999999999874   899999999999753

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.76  E-value=2.9e-18  Score=120.74  Aligned_cols=72  Identities=18%  Similarity=0.212  Sum_probs=64.8

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI  156 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~  156 (156)
                      .+++++.+..  ..+++|+|+|+|+|||||+.+.|.|+++++++++.+.|++||+|+.++++++|+|.++|+++
T Consensus         2 ~~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfv   73 (114)
T cd02986           2 KKEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTI   73 (114)
T ss_pred             HHHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEE
Confidence            3567788765  36999999999999999999999999999999855999999999999999999999999864

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.76  E-value=5.4e-18  Score=116.33  Aligned_cols=74  Identities=15%  Similarity=0.266  Sum_probs=66.7

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ++.++ .++|++.+    ..+++++|+|||+||++|+.+.|.|+++++++++.+.|++||++++++++++++|.++|+.
T Consensus         3 ~~~l~-~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   76 (101)
T cd03003           3 IVTLD-RGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSL   76 (101)
T ss_pred             eEEcC-HhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEE
Confidence            45554 66899988    4679999999999999999999999999999987899999999999999999999999864

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.75  E-value=4.3e-18  Score=124.51  Aligned_cols=75  Identities=19%  Similarity=0.282  Sum_probs=67.2

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccce
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVS  153 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~  153 (156)
                      +..+.+..+|++.+..  ..+++++|+|||+||+||+.+.|.|+++++++++.+.|++||+|++++++.+|+|.+.+
T Consensus         5 l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~   79 (142)
T PLN00410          5 LPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPC   79 (142)
T ss_pred             HhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCC
Confidence            3456788899999964  46899999999999999999999999999999877899999999999999999999554

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.75  E-value=1e-17  Score=118.33  Aligned_cols=78  Identities=10%  Similarity=0.122  Sum_probs=65.9

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHH-HHhCCcccee
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDL-VKRGNISVSI  154 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~-~~~~i~sv~~  154 (156)
                      ++.+++ .++|++++.- ...+++++|+|||+||++|+.++|.++++++++.+.+.|++||++++++++ ++|+|.++|+
T Consensus        10 ~v~~l~-~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT   87 (113)
T cd03006          10 PVLDFY-KGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV   87 (113)
T ss_pred             CeEEec-hhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence            456665 4578876210 057999999999999999999999999999999877999999999999999 5899999986


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        88 l   88 (113)
T cd03006          88 I   88 (113)
T ss_pred             E
Confidence            4

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.74  E-value=1.3e-17  Score=114.79  Aligned_cols=74  Identities=24%  Similarity=0.418  Sum_probs=66.3

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+++ .++|++.+.   ..+++++|+|||+||++|+.+.|.++++++++.+.+.|++||++++++++++++|.++|+.
T Consensus         4 ~~l~-~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~   77 (104)
T cd03004           4 ITLT-PEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTI   77 (104)
T ss_pred             eEcC-HHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEE
Confidence            4454 668998875   4678999999999999999999999999999987799999999999999999999999874

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.73  E-value=2e-17  Score=114.20  Aligned_cols=72  Identities=17%  Similarity=0.337  Sum_probs=65.2

Q ss_pred             ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCccceec
Q 031608           79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .|.+.++|++++    +++++++|+|||+||++|+.+.|.++++++++++ .+.|+.+|+| +++++++|+|.++|+.
T Consensus         3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~   75 (102)
T cd02948           3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTF   75 (102)
T ss_pred             EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEE
Confidence            467888999988    4699999999999999999999999999999975 4889999999 8899999999999975

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.73  E-value=2.3e-17  Score=111.90  Aligned_cols=69  Identities=20%  Similarity=0.309  Sum_probs=62.2

Q ss_pred             hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +|++.+.+  ..+++++|+|||+||++|+.+.|.++++++.+++.+.+++||++++++++++|+|.++|+.
T Consensus         2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~   70 (96)
T cd02956           2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTV   70 (96)
T ss_pred             ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEE
Confidence            56777753  3488999999999999999999999999999987799999999999999999999999875

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.70  E-value=6e-17  Score=111.78  Aligned_cols=68  Identities=13%  Similarity=0.257  Sum_probs=59.5

Q ss_pred             hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC-CCHHHHHHhCCccceec
Q 031608           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d-~~~~l~~~~~i~sv~~~  155 (156)
                      .+.++++.  ..|++++|+|||+||++|+.+.|.|+++++++++ +.+++||.+ ++++++++|+|.++|+.
T Consensus         8 ~~~~~~~~--~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~   76 (100)
T cd02999           8 IALDLMAF--NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTI   76 (100)
T ss_pred             HHHHHHHh--cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEE
Confidence            34444433  6799999999999999999999999999999974 899999998 89999999999999874

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=5e-17  Score=130.31  Aligned_cols=76  Identities=29%  Similarity=0.563  Sum_probs=67.4

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ++.++ ..+|.+.+.+. ...+||||+||||||+||+.+.|.+++++.+|.+++.+++||||+++.++..|||.|+|+
T Consensus        25 I~dvT-~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPt  100 (304)
T COG3118          25 IKDVT-EANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPT  100 (304)
T ss_pred             ceech-HhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCe
Confidence            66776 45787777542 345699999999999999999999999999999999999999999999999999999986

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.70  E-value=1.1e-16  Score=112.82  Aligned_cols=76  Identities=18%  Similarity=0.201  Sum_probs=69.2

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..|.+.++|.+.+.    ++++++|.||++||++|+.+.|.++++++++++ +.|++||++++++++++|+|.++|+.
T Consensus         5 ~v~~i~~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~   79 (113)
T cd02989           5 KYREVSDEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTV   79 (113)
T ss_pred             CeEEeCCHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEE
Confidence            4677888789999994    578999999999999999999999999999875 99999999999999999999999975


Q ss_pred             C
Q 031608          156 I  156 (156)
Q Consensus       156 ~  156 (156)
                      +
T Consensus        80 l   80 (113)
T cd02989          80 I   80 (113)
T ss_pred             E
Confidence            3

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.69  E-value=1.8e-16  Score=110.11  Aligned_cols=74  Identities=26%  Similarity=0.403  Sum_probs=64.3

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc------CCeEEEEEECCCCHHHHHHhCCc
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD------TKLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~------~~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      +++++ .++|++++    ..+++++|.|||+||++|+++.|.++++++.+.      +++.+++||++++++++++|+|.
T Consensus         3 v~~l~-~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~   77 (108)
T cd02996           3 IVSLT-SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRIN   77 (108)
T ss_pred             eEEcC-HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCC
Confidence            45554 66899988    468899999999999999999999999988753      24899999999999999999999


Q ss_pred             cceec
Q 031608          151 SVSIQ  155 (156)
Q Consensus       151 sv~~~  155 (156)
                      ++|+-
T Consensus        78 ~~Ptl   82 (108)
T cd02996          78 KYPTL   82 (108)
T ss_pred             cCCEE
Confidence            99964

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.68  E-value=2.5e-16  Score=116.63  Aligned_cols=78  Identities=17%  Similarity=0.399  Sum_probs=67.0

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCcc--
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNIS--  151 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~s--  151 (156)
                      ..+++++ .++|++.+..  ..+++++|+|||+||++|+.+.|.++++++++.+ ++.|++||++++++++++|+|.+  
T Consensus        28 ~~v~~l~-~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~  104 (152)
T cd02962          28 EHIKYFT-PKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSP  104 (152)
T ss_pred             CccEEcC-HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecC
Confidence            3456665 5689998853  3467999999999999999999999999999874 59999999999999999999988  


Q ss_pred             ----ceec
Q 031608          152 ----VSIQ  155 (156)
Q Consensus       152 ----v~~~  155 (156)
                          +|+.
T Consensus       105 ~v~~~PT~  112 (152)
T cd02962         105 LSKQLPTI  112 (152)
T ss_pred             CcCCCCEE
Confidence                7764

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.68  E-value=2.7e-16  Score=108.72  Aligned_cols=74  Identities=23%  Similarity=0.405  Sum_probs=65.7

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~~~i~sv~~~  155 (156)
                      .+++ .++|++.+.   +.+++++|.|||+||++|+.+.|.++++++.+.+.+.|+.+|+++  +++++.+|+|.++|+.
T Consensus         3 ~~l~-~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~   78 (109)
T cd03002           3 YELT-PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTL   78 (109)
T ss_pred             EEcc-hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEE
Confidence            4454 558998886   568899999999999999999999999999998779999999998  8999999999999864

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=5.1e-17  Score=127.26  Aligned_cols=78  Identities=22%  Similarity=0.417  Sum_probs=72.1

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .++.|+++.+|+..+..  ..+|.++|+|+|+|||||++++|.|+.++.+|+ +.+|++||+|++..++..+||.++|++
T Consensus         2 ~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTF   78 (288)
T KOG0908|consen    2 PVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTF   78 (288)
T ss_pred             CeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceE
Confidence            46788899999999975  568999999999999999999999999999998 489999999999999999999999987


Q ss_pred             C
Q 031608          156 I  156 (156)
Q Consensus       156 ~  156 (156)
                      |
T Consensus        79 i   79 (288)
T KOG0908|consen   79 I   79 (288)
T ss_pred             E
Confidence            6

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.67  E-value=3.1e-16  Score=106.55  Aligned_cols=71  Identities=31%  Similarity=0.569  Sum_probs=65.3

Q ss_pred             ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        82 ~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +.++|++.+.   .++++++|.||++||++|+.+.|.|+++++.+++++.|+.||++++++++++|+|.++|+.
T Consensus         5 t~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~   75 (103)
T PF00085_consen    5 TDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTI   75 (103)
T ss_dssp             STTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEE
T ss_pred             CHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEE
Confidence            4668999995   3489999999999999999999999999999987899999999999999999999999874

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PTZ00051 thioredoxin; Provisional

Probab=99.66  E-value=6e-16  Score=105.14  Aligned_cols=74  Identities=22%  Similarity=0.464  Sum_probs=67.2

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..+++.+++++++    ..+++++|+||++||++|+.+.|.++++++++++ +.|+.+|++++.+++++|++.++|+.
T Consensus         2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~   75 (98)
T PTZ00051          2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTF   75 (98)
T ss_pred             eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEE
Confidence            45678888999988    4689999999999999999999999999998874 99999999999999999999999874

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.65  E-value=3.8e-16  Score=109.68  Aligned_cols=76  Identities=17%  Similarity=0.246  Sum_probs=65.0

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+.+|++ ++|.+.+... ..+++++|+|||+||++|+.+.|.++++++++++ +.|++||++++ +++++|+|.++|+.
T Consensus         5 ~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~   80 (113)
T cd02957           5 EVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTL   80 (113)
T ss_pred             eEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEE
Confidence            3566776 7888888520 1148999999999999999999999999999974 89999999988 99999999999975

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.65  E-value=8.4e-16  Score=105.16  Aligned_cols=72  Identities=19%  Similarity=0.314  Sum_probs=62.5

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +++++ .++|++++     .++ ++|+|||+||++|+.+.|.|+++++.+.+ ++.++.+|++++++++++|+|.++|+.
T Consensus         3 v~~l~-~~~f~~~~-----~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~   75 (101)
T cd02994           3 VVELT-DSNWTLVL-----EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTI   75 (101)
T ss_pred             eEEcC-hhhHHHHh-----CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEE
Confidence            45565 66899887     244 78999999999999999999999988764 599999999999999999999999874

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.65  E-value=7e-16  Score=110.06  Aligned_cols=75  Identities=21%  Similarity=0.127  Sum_probs=66.4

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChh--HH--hhhHHHHHHHHHh--cCCeEEEEEECCCCHHHHHHhCCc
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRK--CI--YLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~--Ck--~~~p~l~~la~~~--~~~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      +..++ .++|++.+.   +++.++|++|||+||+|  |+  .+.|.+.+++.++  .+++.|++||+|++++++++|||.
T Consensus        11 v~~lt-~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~   86 (120)
T cd03065          11 VIDLN-EKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD   86 (120)
T ss_pred             eeeCC-hhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence            44554 579999987   57889999999999987  99  8899999999988  767999999999999999999999


Q ss_pred             cceec
Q 031608          151 SVSIQ  155 (156)
Q Consensus       151 sv~~~  155 (156)
                      ++|+-
T Consensus        87 ~iPTl   91 (120)
T cd03065          87 EEDSI   91 (120)
T ss_pred             cccEE
Confidence            99974

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PRK09381 trxA thioredoxin; Provisional

Probab=99.65  E-value=1e-15  Score=106.22  Aligned_cols=76  Identities=25%  Similarity=0.515  Sum_probs=66.9

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .++.+.. ++|++.+.   ..+++++|+||++||++|+.+.|.++++++.+.+++.++.+|++..+.++++|++.++|+.
T Consensus         4 ~v~~~~~-~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   79 (109)
T PRK09381          4 KIIHLTD-DSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL   79 (109)
T ss_pred             cceeeCh-hhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence            4667754 57876654   4689999999999999999999999999999987899999999999999999999999864

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.64  E-value=4.2e-16  Score=109.28  Aligned_cols=72  Identities=19%  Similarity=0.380  Sum_probs=61.7

Q ss_pred             ChhhHHHH-HHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCccceec
Q 031608           82 DSDHLDQI-LLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        82 ~~~~~~~~-l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +.++|++. +..  ..+++++|+|||+||++|+.+.|.++++++++++ ++.+++||++.+++++++++|.++|+.
T Consensus        10 ~~~~~~~~~~~~--~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~   83 (111)
T cd02963          10 TFSQYENEIVPK--SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAI   83 (111)
T ss_pred             eHHHHHHhhccc--cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEE
Confidence            34566543 321  3689999999999999999999999999999975 599999999999999999999999964

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.64  E-value=6.1e-16  Score=108.75  Aligned_cols=71  Identities=13%  Similarity=0.123  Sum_probs=64.9

Q ss_pred             ChhhHHHHHHHhhcCCCcEEEEEeCCC--ChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031608           82 DSDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI  156 (156)
Q Consensus        82 ~~~~~~~~l~~a~~~~k~vlV~F~A~W--C~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~  156 (156)
                      +..+|++.+    ..+.+++|+|||+|  ||+|+.+.|.|++++++|++.+.|++||++++++++.+|+|.++|+.|
T Consensus        16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli   88 (111)
T cd02965          16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL   88 (111)
T ss_pred             ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence            356888888    46899999999997  999999999999999999988999999999999999999999999854

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.64  E-value=1.2e-15  Score=104.09  Aligned_cols=74  Identities=20%  Similarity=0.346  Sum_probs=65.2

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+++ ..+|++.+.   +.+++++|.|||+||++|+.+.|.|.++++++.+.+.|+.+|++++++++++++|.++|+-
T Consensus         3 ~~l~-~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~   76 (103)
T cd03001           3 VELT-DSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTI   76 (103)
T ss_pred             EEcC-HHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEE
Confidence            4454 568888875   4577799999999999999999999999999887799999999999999999999999863

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.64  E-value=1.4e-15  Score=103.02  Aligned_cols=71  Identities=17%  Similarity=0.330  Sum_probs=63.3

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .++|++++..  ..+++++|+|||+||++|+.+.|.|+++++++..++.++++|.+++++++.+|++.++|+.
T Consensus         2 ~~~~~~~~~~--~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~   72 (97)
T cd02984           2 EEEFEELLKS--DASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTF   72 (97)
T ss_pred             HHHHHHHHhh--CCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEE
Confidence            4678888864  2269999999999999999999999999999655799999999999999999999999875

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PRK10996 thioredoxin 2; Provisional

Probab=99.62  E-value=2.1e-15  Score=109.87  Aligned_cols=70  Identities=27%  Similarity=0.485  Sum_probs=64.8

Q ss_pred             ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        82 ~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +.++|++++    +++++++|+|||+||++|+.+.|.|+++++++.+++.|+++|++++++++++|+|.++|+.
T Consensus        41 ~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptl  110 (139)
T PRK10996         41 TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTI  110 (139)
T ss_pred             CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence            466899888    4689999999999999999999999999999887899999999999999999999999975

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.62  E-value=1.9e-15  Score=103.06  Aligned_cols=72  Identities=21%  Similarity=0.378  Sum_probs=62.8

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCcccee
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..++ .++|++.+.    ++ +++|+|||+||++|+.+.|.++++++++.+   ++.++.+|++++++++++|+|.++|+
T Consensus         3 ~~l~-~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt   76 (102)
T cd03005           3 LELT-EDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPT   76 (102)
T ss_pred             eECC-HHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCE
Confidence            3454 568999984    34 599999999999999999999999999865   69999999999999999999999986


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        77 ~   77 (102)
T cd03005          77 L   77 (102)
T ss_pred             E
Confidence            4

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.61  E-value=2.3e-15  Score=103.86  Aligned_cols=68  Identities=21%  Similarity=0.363  Sum_probs=59.7

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCccceecC
Q 031608           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISVSIQI  156 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~sv~~~~  156 (156)
                      ++|+++.     .+++++|.|||+||++|+.+.|.|+++++++.+   ++.++.+|++..++++++++|.++|+.+
T Consensus         7 ~~~~~~~-----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~   77 (104)
T cd03000           7 DSFKDVR-----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIK   77 (104)
T ss_pred             hhhhhhc-----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEE
Confidence            5677643     478999999999999999999999999998842   4899999999999999999999999753

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.61  E-value=2.7e-15  Score=106.88  Aligned_cols=76  Identities=18%  Similarity=0.356  Sum_probs=65.6

Q ss_pred             ecCChhhHHHHHHHhhcCCCcEEEEEeC-------CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC-------CHHHH
Q 031608           79 PINDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-------VSKDL  144 (156)
Q Consensus        79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A-------~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~-------~~~l~  144 (156)
                      .+.+.++|.+.+..  ..+++++|+|||       +||++|+.+.|.++++++++++++.|++||+++       +.+++
T Consensus         5 ~~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~   82 (119)
T cd02952           5 AVRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR   82 (119)
T ss_pred             cccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence            35667788888863  347999999999       999999999999999999998679999999976       46899


Q ss_pred             HHhCCc-cceecC
Q 031608          145 VKRGNI-SVSIQI  156 (156)
Q Consensus       145 ~~~~i~-sv~~~~  156 (156)
                      .+++|. ++|+.+
T Consensus        83 ~~~~I~~~iPT~~   95 (119)
T cd02952          83 TDPKLTTGVPTLL   95 (119)
T ss_pred             hccCcccCCCEEE
Confidence            999998 998753

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.60  E-value=6.8e-15  Score=100.46  Aligned_cols=73  Identities=21%  Similarity=0.326  Sum_probs=63.7

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc--CCeEEEEEECCC--CHHHHHHhCCccce
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNK--VSKDLVKRGNISVS  153 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d~--~~~l~~~~~i~sv~  153 (156)
                      ..++ .++|++.+.    .+++++|+|||+||++|+++.|.++++++.+.  +.+.++.+|+++  ++.++.+++|.++|
T Consensus         3 ~~l~-~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P   77 (104)
T cd02997           3 VHLT-DEDFRKFLK----KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFP   77 (104)
T ss_pred             EEec-hHhHHHHHh----hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcccc
Confidence            4454 558888884    57899999999999999999999999999886  468999999988  99999999999998


Q ss_pred             ec
Q 031608          154 IQ  155 (156)
Q Consensus       154 ~~  155 (156)
                      +.
T Consensus        78 t~   79 (104)
T cd02997          78 TF   79 (104)
T ss_pred             EE
Confidence            64

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.60  E-value=3.8e-15  Score=108.98  Aligned_cols=68  Identities=18%  Similarity=0.445  Sum_probs=59.4

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC--HHHHHHhCCccceec
Q 031608           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV--SKDLVKRGNISVSIQ  155 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~--~~l~~~~~i~sv~~~  155 (156)
                      .++++.+    ..++++||+|||+||++|+.+.|.++++++++.+++.|+.||++..  .+++++|+|.++|+.
T Consensus        11 ~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~   80 (142)
T cd02950          11 TPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHF   80 (142)
T ss_pred             CCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEE
Confidence            4666666    4799999999999999999999999999999987788998888764  688999999999874

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.59  E-value=7.1e-15  Score=100.28  Aligned_cols=74  Identities=24%  Similarity=0.450  Sum_probs=64.4

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc--CCeEEEEEECCC-CHHHHHHhCCcccee
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNK-VSKDLVKRGNISVSI  154 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d~-~~~l~~~~~i~sv~~  154 (156)
                      ..++ .++|++.+.   ..+++++|.|||+||++|+.+.|.++++++.+.  +++.++.+|+++ +++++++++|.++|.
T Consensus         3 ~~l~-~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~   78 (105)
T cd02998           3 VELT-DSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPT   78 (105)
T ss_pred             EEcc-hhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCE
Confidence            3454 458888775   457799999999999999999999999999986  469999999999 999999999999986


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        79 ~   79 (105)
T cd02998          79 L   79 (105)
T ss_pred             E
Confidence            4

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.59  E-value=1.1e-14  Score=101.54  Aligned_cols=77  Identities=14%  Similarity=0.233  Sum_probs=63.4

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC-CHHHHHH-hCCccce
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK-VSKDLVK-RGNISVS  153 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~-~~~l~~~-~~i~sv~  153 (156)
                      +++++ .++|+.++.. .+.+++++|+|||+||++|+++.|.++++++.+.+ ++.++.||++. ...++.+ +++.++|
T Consensus         3 v~~~~-~~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~P   80 (109)
T cd02993           3 VVTLS-RAEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFP   80 (109)
T ss_pred             ceecc-HHHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCC
Confidence            44554 5588888742 14689999999999999999999999999999976 49999999997 5777764 8999888


Q ss_pred             ec
Q 031608          154 IQ  155 (156)
Q Consensus       154 ~~  155 (156)
                      +.
T Consensus        81 ti   82 (109)
T cd02993          81 TI   82 (109)
T ss_pred             EE
Confidence            64

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.58  E-value=7.4e-15  Score=115.02  Aligned_cols=79  Identities=15%  Similarity=0.344  Sum_probs=67.8

Q ss_pred             ceEecCChhhHHHHHHHhh-cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           76 ELEPINDSDHLDQILLRAQ-ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~-~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      .+.+++ .++|++++.... ..+++++|+|||+||++|+.+.|.++++++++++.+.|+.+|++++++++++|+|.++|+
T Consensus        31 ~Vv~Lt-~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT  109 (224)
T PTZ00443         31 ALVLLN-DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT  109 (224)
T ss_pred             CcEECC-HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence            356664 669999885310 136899999999999999999999999999998779999999999999999999999987


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus       110 l  110 (224)
T PTZ00443        110 L  110 (224)
T ss_pred             E
Confidence            4

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.58  E-value=8.3e-15  Score=110.80  Aligned_cols=80  Identities=11%  Similarity=0.144  Sum_probs=67.5

Q ss_pred             ccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccce
Q 031608           74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVS  153 (156)
Q Consensus        74 ~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~  153 (156)
                      ...+.+|++.++|.+.+... ..+.+|||.|||+||++|+.+.|.|++++++|+ .+.|++||++++ +++.+|+|.++|
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vP  137 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALP  137 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCC
Confidence            34577888757888888531 123599999999999999999999999999997 599999999987 899999999999


Q ss_pred             ecC
Q 031608          154 IQI  156 (156)
Q Consensus       154 ~~~  156 (156)
                      +.+
T Consensus       138 Tll  140 (175)
T cd02987         138 ALL  140 (175)
T ss_pred             EEE
Confidence            753

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.58  E-value=6.8e-15  Score=101.35  Aligned_cols=68  Identities=21%  Similarity=0.408  Sum_probs=58.8

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCC----CHHHHHHhCCccceec
Q 031608           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNK----VSKDLVKRGNISVSIQ  155 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~----~~~l~~~~~i~sv~~~  155 (156)
                      +.|++.+    .++++++|.|||+||++|+.+.|.+   +++++.+.+++.++.+|+++    .++++++|+|.++|+.
T Consensus         2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti   76 (104)
T cd02953           2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTY   76 (104)
T ss_pred             HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEE
Confidence            3566666    5799999999999999999999988   67888887679999999976    5789999999999864

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>TIGR01068 thioredoxin thioredoxin

Probab=99.57  E-value=1.7e-14  Score=97.47  Aligned_cols=70  Identities=30%  Similarity=0.610  Sum_probs=63.0

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .++|.+.+.   ..+++++|.||++||++|+.+.|.++++++++++++.|+.+|++++++++++|+|.++|..
T Consensus         3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~   72 (101)
T TIGR01068         3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTL   72 (101)
T ss_pred             HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEE
Confidence            457888775   3577999999999999999999999999999887799999999999999999999999864

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.56  E-value=2e-14  Score=101.32  Aligned_cols=75  Identities=20%  Similarity=0.352  Sum_probs=63.1

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECC--CCHHHHHHhCCcc
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVN--KVSKDLVKRGNIS  151 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d--~~~~l~~~~~i~s  151 (156)
                      +++++ .++|++.+.   +.+++++|+|||+||++|+.+.|.|+++++.+.+   .+.|+.+|++  .+++++++|+|.+
T Consensus         3 v~~l~-~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~   78 (114)
T cd02992           3 VIVLD-AASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG   78 (114)
T ss_pred             eEECC-HHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC
Confidence            34554 668999986   4568999999999999999999999999998753   4899999985  4778999999999


Q ss_pred             ceec
Q 031608          152 VSIQ  155 (156)
Q Consensus       152 v~~~  155 (156)
                      +|+.
T Consensus        79 ~Pt~   82 (114)
T cd02992          79 YPTL   82 (114)
T ss_pred             CCEE
Confidence            9864

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.56  E-value=2.5e-14  Score=97.61  Aligned_cols=68  Identities=25%  Similarity=0.408  Sum_probs=61.4

Q ss_pred             hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .++..+.   ..+++++|.||++||++|+.+.|.++++++++++++.++.+|+++.++++.+++|.++|+.
T Consensus         4 ~~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~   71 (97)
T cd02949           4 ALRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTV   71 (97)
T ss_pred             hHHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEE
Confidence            3556665   5799999999999999999999999999999987799999999999999999999999864

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.55  E-value=2.5e-14  Score=97.05  Aligned_cols=69  Identities=25%  Similarity=0.466  Sum_probs=62.7

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHhCCccceec
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .++|++++    ..+++++|.||++||++|+.+.|.++++++.+.+  ++.++.+|++++++++++|+|.++|..
T Consensus         3 ~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~   73 (102)
T TIGR01126         3 ASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTI   73 (102)
T ss_pred             hhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEE
Confidence            45788888    4699999999999999999999999999999876  599999999999999999999999853

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.55  E-value=2.4e-14  Score=97.61  Aligned_cols=72  Identities=18%  Similarity=0.378  Sum_probs=61.6

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHhCCcccee
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..++ .++|++.+.   ..+++++|+|||+||++|+.+.|.++++++.+.+  ++.++.+|++.+ +++..+++.++|+
T Consensus         3 ~~l~-~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt   76 (104)
T cd02995           3 KVVV-GKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPT   76 (104)
T ss_pred             EEEc-hhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCE
Confidence            4454 558888886   4579999999999999999999999999999875  599999999987 5788899888875

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.54  E-value=3.5e-14  Score=100.00  Aligned_cols=60  Identities=22%  Similarity=0.197  Sum_probs=55.3

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .++..++|.|||+||++|+.++|.++++++.+ +++.|..+|.+++++++.+|+|.++|+.
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~   79 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTT   79 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEE
Confidence            45778999999999999999999999999887 4699999999999999999999999975

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.52  E-value=6.7e-14  Score=93.79  Aligned_cols=69  Identities=29%  Similarity=0.488  Sum_probs=62.3

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHh--cCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~--~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..+|.+.+.    ++++++|.||++||++|+.+.|.++++++.+  .+++.|+.+|+++++.++++++|.++|..
T Consensus         5 ~~~~~~~i~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~   75 (101)
T cd02961           5 DDNFDELVK----DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTI   75 (101)
T ss_pred             HHHHHHHHh----CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEE
Confidence            458888884    5679999999999999999999999999999  46799999999999999999999998864

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.50  E-value=8.9e-14  Score=98.81  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=52.5

Q ss_pred             cCC-CcEEEEEeCCCChhHHhhhHHHH---HHHHHhcCCeEEEEEECCCC-------------HHHHHHhCCccceec
Q 031608           95 ELS-QPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVNKV-------------SKDLVKRGNISVSIQ  155 (156)
Q Consensus        95 ~~~-k~vlV~F~A~WC~~Ck~~~p~l~---~la~~~~~~v~~~~vd~d~~-------------~~l~~~~~i~sv~~~  155 (156)
                      .++ ++++|+|||+||++|++++|.+.   .+.+.+.+++.++.+|++..             .+++.+|+|.++|+.
T Consensus        11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~   88 (125)
T cd02951          11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV   88 (125)
T ss_pred             HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence            578 99999999999999999999884   56666655689999999864             688999999999874

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.48  E-value=9.4e-14  Score=98.49  Aligned_cols=71  Identities=17%  Similarity=0.304  Sum_probs=54.2

Q ss_pred             hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH-HHHHHhCCcc--ceec
Q 031608           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNIS--VSIQ  155 (156)
Q Consensus        85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~-~l~~~~~i~s--v~~~  155 (156)
                      ++++.++.|+..+++++|+|||+||++|+.+.|.+.+.......+..|+.||++.++ .....|++.+  +|+.
T Consensus         7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~   80 (117)
T cd02959           7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRI   80 (117)
T ss_pred             eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceE
Confidence            577777777788999999999999999999999999976654333456667776543 3456787765  6654

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.45  E-value=3.4e-13  Score=115.20  Aligned_cols=78  Identities=14%  Similarity=0.187  Sum_probs=64.3

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCH-HHH-HHhCCccc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS-KDL-VKRGNISV  152 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~-~l~-~~~~i~sv  152 (156)
                      .++.++ .++|++++.. .+.++++||+|||+||++|+.+.|.|+++++++.+ ++.|++||+|.+. +++ ++|+|.++
T Consensus       352 ~Vv~L~-~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~  429 (463)
T TIGR00424       352 NVVSLS-RPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF  429 (463)
T ss_pred             CeEECC-HHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence            455655 5689999841 15799999999999999999999999999999975 4899999998754 454 68999999


Q ss_pred             eec
Q 031608          153 SIQ  155 (156)
Q Consensus       153 ~~~  155 (156)
                      |+.
T Consensus       430 PTi  432 (463)
T TIGR00424       430 PTI  432 (463)
T ss_pred             ceE
Confidence            875

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=2.5e-13  Score=116.13  Aligned_cols=75  Identities=23%  Similarity=0.391  Sum_probs=66.1

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCcc
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNIS  151 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~s  151 (156)
                      ..+..+ +.++|++.+    ..+..++|.||||||+||++++|.++++++.+..   .+.+++||++.+.++|.+|+|..
T Consensus        25 ~~Vl~L-t~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~g   99 (493)
T KOG0190|consen   25 EDVLVL-TKDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRG   99 (493)
T ss_pred             cceEEE-ecccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCC
Confidence            345555 467999999    5789999999999999999999999999998854   68999999999999999999998


Q ss_pred             cee
Q 031608          152 VSI  154 (156)
Q Consensus       152 v~~  154 (156)
                      +|+
T Consensus       100 yPT  102 (493)
T KOG0190|consen  100 YPT  102 (493)
T ss_pred             CCe
Confidence            875

>PLN02309 5'-adenylylsulfate reductase

Probab=99.42  E-value=1.1e-12  Score=112.11  Aligned_cols=78  Identities=15%  Similarity=0.240  Sum_probs=66.2

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC-CCHHHHH-HhCCccc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN-KVSKDLV-KRGNISV  152 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d-~~~~l~~-~~~i~sv  152 (156)
                      .++.++ .++|++++... ..++++||+|||+||++|+.+.|.|+++++++.+ ++.|++||++ ++.+++. +|+|.++
T Consensus       346 ~Vv~Lt-~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~  423 (457)
T PLN02309        346 NVVALS-RAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF  423 (457)
T ss_pred             CcEECC-HHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence            455654 66899887421 4689999999999999999999999999999865 5999999999 7888886 5999999


Q ss_pred             eec
Q 031608          153 SIQ  155 (156)
Q Consensus       153 ~~~  155 (156)
                      |+.
T Consensus       424 PTi  426 (457)
T PLN02309        424 PTI  426 (457)
T ss_pred             eEE
Confidence            875

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.39  E-value=8e-13  Score=101.36  Aligned_cols=77  Identities=14%  Similarity=0.153  Sum_probs=60.9

Q ss_pred             ccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccce
Q 031608           74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVS  153 (156)
Q Consensus        74 ~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~  153 (156)
                      ...+.+|+. ++|...+..+ ..+.+|||.||++||++|+.+.|.|++++.+|+ .+.|++||+++.   +..|++.++|
T Consensus        81 ~G~v~eis~-~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lP  154 (192)
T cd02988          81 FGEVYEISK-PDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLP  154 (192)
T ss_pred             CCeEEEeCH-HHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCC
Confidence            345777864 4666554321 224689999999999999999999999999997 499999999864   5789999998


Q ss_pred             ecC
Q 031608          154 IQI  156 (156)
Q Consensus       154 ~~~  156 (156)
                      +.|
T Consensus       155 Tll  157 (192)
T cd02988         155 TIL  157 (192)
T ss_pred             EEE
Confidence            753

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.39  E-value=1.3e-12  Score=110.22  Aligned_cols=74  Identities=24%  Similarity=0.432  Sum_probs=64.5

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCccce
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISVS  153 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~sv~  153 (156)
                      +..+ +.++|++++.    .+++++|.|||+||++|+.+.|.+.++++.+.+   ++.|+.||++++++++++++|.++|
T Consensus         3 v~~l-~~~~~~~~i~----~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   77 (462)
T TIGR01130         3 VLVL-TKDNFDDFIK----SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYP   77 (462)
T ss_pred             ceEC-CHHHHHHHHh----cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcccc
Confidence            3444 4668999984    688999999999999999999999999887753   4999999999999999999999988


Q ss_pred             ec
Q 031608          154 IQ  155 (156)
Q Consensus       154 ~~  155 (156)
                      +.
T Consensus        78 t~   79 (462)
T TIGR01130        78 TL   79 (462)
T ss_pred             EE
Confidence            63

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.39  E-value=1.5e-12  Score=93.05  Aligned_cols=72  Identities=17%  Similarity=0.153  Sum_probs=55.6

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH-----------HHHH
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-----------KDLV  145 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~-----------~l~~  145 (156)
                      ..+|+ .++|.+.+    .+++.++|.|+++|||+|+.+.|.|++++++.  ++.++.||++.++           ++..
T Consensus         8 ~~~it-~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~   80 (122)
T TIGR01295         8 LEVTT-VVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRS   80 (122)
T ss_pred             ceecC-HHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHH
Confidence            34454 56888888    46899999999999999999999999999983  4779999988543           4456


Q ss_pred             HhCC----ccceec
Q 031608          146 KRGN----ISVSIQ  155 (156)
Q Consensus       146 ~~~i----~sv~~~  155 (156)
                      +|++    .++|+.
T Consensus        81 ~~~i~~~i~~~PT~   94 (122)
T TIGR01295        81 RFGIPTSFMGTPTF   94 (122)
T ss_pred             HcCCcccCCCCCEE
Confidence            6654    447764

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.39  E-value=1.2e-12  Score=85.84  Aligned_cols=57  Identities=18%  Similarity=0.308  Sum_probs=52.2

Q ss_pred             EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031608          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI  156 (156)
Q Consensus       100 vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~  156 (156)
                      .+..||++||++|+.+.|.+++++++++..+.++.||+++++++++++|+.++|+.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~   58 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIV   58 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEE
Confidence            367799999999999999999999998767999999999999999999999998753

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.39  E-value=2e-12  Score=84.81  Aligned_cols=66  Identities=30%  Similarity=0.583  Sum_probs=58.4

Q ss_pred             hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +|++.+.    .+++++|.||++||++|+.+.|.++++++. .+++.++.+|++++++++.++++.++|+-
T Consensus         2 ~~~~~~~----~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~   67 (93)
T cd02947           2 EFEELIK----SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTF   67 (93)
T ss_pred             chHHHHh----cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEE
Confidence            4666663    469999999999999999999999999988 44699999999999999999999998863

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.37  E-value=2.8e-12  Score=112.47  Aligned_cols=79  Identities=19%  Similarity=0.341  Sum_probs=68.2

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCC----CHHHHHHhC
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNK----VSKDLVKRG  148 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~----~~~l~~~~~  148 (156)
                      ...++.+.+++++.++.++.+||+++|+|||+||++|+.++|..   +++.++++ ++.++++|+++    +.+++++|+
T Consensus       453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~  531 (571)
T PRK00293        453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYN  531 (571)
T ss_pred             CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcC
Confidence            46778888999999988777899999999999999999999875   67777776 58999999975    368899999


Q ss_pred             Cccceec
Q 031608          149 NISVSIQ  155 (156)
Q Consensus       149 i~sv~~~  155 (156)
                      +.++|+.
T Consensus       532 v~g~Pt~  538 (571)
T PRK00293        532 VLGLPTI  538 (571)
T ss_pred             CCCCCEE
Confidence            9999874

>PHA02125 thioredoxin-like protein

Probab=99.37  E-value=1.5e-12  Score=85.17  Aligned_cols=50  Identities=22%  Similarity=0.406  Sum_probs=44.8

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI  156 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~  156 (156)
                      ++.|||+||++|+.+.|.|+++.      +.++.||.+++++++++|+|.++|+.+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~   51 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV   51 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence            78999999999999999998652      468999999999999999999999864

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.37  E-value=1.9e-12  Score=95.28  Aligned_cols=47  Identities=19%  Similarity=0.399  Sum_probs=40.6

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--------CeEEEEEECCCCHH
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--------KLKFYYVDVNKVSK  142 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--------~v~~~~vd~d~~~~  142 (156)
                      .||+++|+|||+||++|++++|.|.++++++.+        ++.++.|+.|+..+
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~   78 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQ   78 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHH
Confidence            589999999999999999999999998876542        48999999986543

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.35  E-value=3e-12  Score=109.05  Aligned_cols=74  Identities=18%  Similarity=0.360  Sum_probs=64.5

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc---CCeEEEEEECCCCHHHHHHhCCccce
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISVS  153 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~---~~v~~~~vd~d~~~~l~~~~~i~sv~  153 (156)
                      +..++ .++|++++.    .++.++|+|||+||++|+++.|.++++++.+.   .++.|+.||++++.+++++|+|.++|
T Consensus        34 v~~l~-~~~f~~~i~----~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~P  108 (477)
T PTZ00102         34 VTVLT-DSTFDKFIT----ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYP  108 (477)
T ss_pred             cEEcc-hhhHHHHHh----cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCccc
Confidence            45554 668999884    68899999999999999999999999987764   35999999999999999999999998


Q ss_pred             ec
Q 031608          154 IQ  155 (156)
Q Consensus       154 ~~  155 (156)
                      +.
T Consensus       109 t~  110 (477)
T PTZ00102        109 TI  110 (477)
T ss_pred             EE
Confidence            64

>PTZ00102 disulphide isomerase; Provisional

Probab=99.35  E-value=3e-12  Score=108.98  Aligned_cols=75  Identities=13%  Similarity=0.352  Sum_probs=65.0

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHhCCcccee
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      +..+. .++|++++.   ..+++++|+|||+||++|+.+.|.|+++++.+.+  .+.++++|++.+...+.++++.++|+
T Consensus       359 v~~l~-~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt  434 (477)
T PTZ00102        359 VKVVV-GNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPT  434 (477)
T ss_pred             eEEec-ccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCe
Confidence            44554 568888865   5799999999999999999999999999998864  58999999999999999999999886


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      -
T Consensus       435 ~  435 (477)
T PTZ00102        435 I  435 (477)
T ss_pred             E
Confidence            4

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.34  E-value=2.9e-12  Score=87.48  Aligned_cols=59  Identities=20%  Similarity=0.325  Sum_probs=55.8

Q ss_pred             CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc--cceec
Q 031608           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI--SVSIQ  155 (156)
Q Consensus        97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~--sv~~~  155 (156)
                      ++++++.|+++||++|+.+.|.++++++++.+++.|+.||++++++++..+|+.  ++|.-
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~   72 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVI   72 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEE
Confidence            799999999999999999999999999999888999999999999999999999  77753

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.31  E-value=7.5e-12  Score=89.81  Aligned_cols=45  Identities=20%  Similarity=0.521  Sum_probs=39.9

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKV  140 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~  140 (156)
                      .||+++|+|||+||++|+.+.|.++++++++.+   ++.++.|+++..
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~   63 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS   63 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence            589999999999999999999999999988764   488888888764

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.30  E-value=1.2e-11  Score=83.48  Aligned_cols=46  Identities=28%  Similarity=0.710  Sum_probs=40.4

Q ss_pred             CCcEEEEEeCCCChhHHhhhHHHHHHHHHhc--CCeEEEEEECCCCHH
Q 031608           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSK  142 (156)
Q Consensus        97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d~~~~  142 (156)
                      ||+++|+|||+||++|+.+.|.+.++.++++  +++.|+.|+.|+..+
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~   48 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEE   48 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHH
Confidence            6899999999999999999999999999999  579999999987643

...

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.30  E-value=6.9e-12  Score=79.70  Aligned_cols=54  Identities=15%  Similarity=0.155  Sum_probs=49.3

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ++.|+++||++|+.+.|.++++++.++ ++.+..+|+++++++++++|+.++|+-
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti   56 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAI   56 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEE
Confidence            678999999999999999999987654 599999999999999999999999874

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.28  E-value=2e-11  Score=92.69  Aligned_cols=44  Identities=20%  Similarity=0.493  Sum_probs=38.2

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK  142 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~  142 (156)
                      .|++++|+|||+||++|++++|.+.++.++   ++.++.|+.+++++
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~  110 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQ  110 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHH
Confidence            599999999999999999999999998653   48899999876544

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=5.9e-12  Score=107.73  Aligned_cols=62  Identities=23%  Similarity=0.550  Sum_probs=53.7

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHH
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSK  142 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~  142 (156)
                      ++.+. ..+|++++.   ..+|-|||.|||||||||+++.|++++|++.|.+  ++.++++|.+.|.-
T Consensus       368 VkvvV-gknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~  431 (493)
T KOG0190|consen  368 VKVVV-GKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV  431 (493)
T ss_pred             eEEEe-ecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC
Confidence            44444 558999986   6899999999999999999999999999999975  69999999987653

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.27  E-value=1.9e-11  Score=87.73  Aligned_cols=65  Identities=18%  Similarity=0.198  Sum_probs=50.7

Q ss_pred             HHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCCCHHHHHH--------hCCccceec
Q 031608           91 LRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKDLVK--------RGNISVSIQ  155 (156)
Q Consensus        91 ~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l~~~--------~~i~sv~~~  155 (156)
                      ..|+..+|+|+|+|+|+||++|+.+.+..   .++++.+..++.++++|.++.+++++.        ||+.++|+-
T Consensus         9 ~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~   84 (124)
T cd02955           9 EKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN   84 (124)
T ss_pred             HHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence            34447899999999999999999998743   456666655799999999998887663        366666653

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.27  E-value=6.3e-12  Score=87.34  Aligned_cols=58  Identities=19%  Similarity=0.258  Sum_probs=45.5

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC---CCCHHHHHHhCCccce
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV---NKVSKDLVKRGNISVS  153 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~---d~~~~l~~~~~i~sv~  153 (156)
                      +|++++|+||++||++|+.+.|.++++++++.+++.++.+.-   ++..+.++++++..++
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p   80 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFP   80 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCc
Confidence            389999999999999999999999999988866677776632   2344567777776544

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.27  E-value=2e-11  Score=86.57  Aligned_cols=41  Identities=29%  Similarity=0.536  Sum_probs=36.1

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      .|++++|+|||+||++|+.+.|.++++.++++  +.++.|+.+
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~   64 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYK   64 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECC
Confidence            58999999999999999999999999988763  778887753

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PTZ00062 glutaredoxin; Provisional

Probab=99.26  E-value=1.3e-11  Score=95.47  Aligned_cols=64  Identities=16%  Similarity=0.189  Sum_probs=55.3

Q ss_pred             CChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031608           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI  156 (156)
Q Consensus        81 ~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~  156 (156)
                      .+.+++++++.   .+...+++.|||+||++|+.+.|.+.+++++|++ +.|+.||.+        |+|.+||+++
T Consensus         4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv   67 (204)
T PTZ00062          4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFE   67 (204)
T ss_pred             CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEE
Confidence            45678888884   2337789999999999999999999999999974 999999987        9999999764

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.26  E-value=1.2e-11  Score=81.22  Aligned_cols=52  Identities=15%  Similarity=0.258  Sum_probs=45.0

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .|+|||+||++|+.+.|.+++++++++..+.++.+|   +.+.+.+||+.++|+.
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti   53 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGV   53 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEE
Confidence            388999999999999999999999998778887777   3555888999999874

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.26  E-value=1.9e-11  Score=87.28  Aligned_cols=60  Identities=15%  Similarity=0.309  Sum_probs=48.9

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCC------------------------HHHHHHhC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKV------------------------SKDLVKRG  148 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~------------------------~~l~~~~~  148 (156)
                      .|+++||+|||+||++|+.+.|.+.++++++.+   ++.++.|++|..                        ..+++.|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            589999999999999999999999999888752   578888888754                        34566788


Q ss_pred             Cccceec
Q 031608          149 NISVSIQ  155 (156)
Q Consensus       149 i~sv~~~  155 (156)
                      +..+|..
T Consensus        97 v~~~P~~  103 (131)
T cd03009          97 IEGIPTL  103 (131)
T ss_pred             CCCCCEE
Confidence            8777753

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.26  E-value=1.9e-11  Score=86.63  Aligned_cols=68  Identities=9%  Similarity=-0.011  Sum_probs=56.1

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeC--CCCh---hHHhhhHHHHHHHHHhcCCeEEEEEECC-----CCHHHHHHh
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMA--SWCR---KCIYLKPKLEKLAAEFDTKLKFYYVDVN-----KVSKDLVKR  147 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A--~WC~---~Ck~~~p~l~~la~~~~~~v~~~~vd~d-----~~~~l~~~~  147 (156)
                      +.+ +.++|++++    ..++.+||.|||  |||+   +|+.++|.+.+.+.    .+.+++||++     ++.+++++|
T Consensus         4 v~L-~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y   74 (116)
T cd03007           4 VDL-DTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERY   74 (116)
T ss_pred             eEC-ChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHh
Confidence            444 466999999    468999999999  9999   88888888777654    3899999994     578899999


Q ss_pred             CCc--ccee
Q 031608          148 GNI--SVSI  154 (156)
Q Consensus       148 ~i~--sv~~  154 (156)
                      +|.  .+|+
T Consensus        75 ~I~~~gyPT   83 (116)
T cd03007          75 KLDKESYPV   83 (116)
T ss_pred             CCCcCCCCE
Confidence            999  7775

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.22  E-value=2.6e-11  Score=89.89  Aligned_cols=42  Identities=21%  Similarity=0.447  Sum_probs=36.4

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      .++..+|+|||+||++|++++|.+++++++++  +.++.|++|+
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~   90 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDG   90 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCC
Confidence            47778999999999999999999999999985  6677777764

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.22  E-value=6e-11  Score=92.08  Aligned_cols=58  Identities=22%  Similarity=0.241  Sum_probs=51.0

Q ss_pred             CCc-EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           97 SQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        97 ~k~-vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .++ +++.|||+||++|+.+.|.+++++.+++ ++.+..+|.+++++++.+|+|.++|+-
T Consensus       132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl  190 (215)
T TIGR02187       132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKI  190 (215)
T ss_pred             CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEE
Confidence            445 4555999999999999999999998854 699999999999999999999999974

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.20  E-value=2.8e-11  Score=104.83  Aligned_cols=60  Identities=20%  Similarity=0.226  Sum_probs=49.9

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC----------------------------CCCHHHHHH
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV----------------------------NKVSKDLVK  146 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~----------------------------d~~~~l~~~  146 (156)
                      .||++||+|||+||++|+.++|.|++++++++. ++.|+.|+.                            |.+.++++.
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~  134 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS  134 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence            589999999999999999999999999998863 477766643                            445678888


Q ss_pred             hCCccceec
Q 031608          147 RGNISVSIQ  155 (156)
Q Consensus       147 ~~i~sv~~~  155 (156)
                      |+|.++|+.
T Consensus       135 fgV~giPTt  143 (521)
T PRK14018        135 LNISVYPSW  143 (521)
T ss_pred             cCCCCcCeE
Confidence            888888865

>TIGR02740 TraF-like TraF-like protein

Probab=99.18  E-value=9.1e-11  Score=94.40  Aligned_cols=59  Identities=15%  Similarity=0.164  Sum_probs=50.9

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC-----------CHHHHHHhCCccceec
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-----------VSKDLVKRGNISVSIQ  155 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~-----------~~~l~~~~~i~sv~~~  155 (156)
                      -.++++||+|||+||++|+.++|.+++++++|+  +.++.|++|.           +..+++++||.++|..
T Consensus       164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl  233 (271)
T TIGR02740       164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAV  233 (271)
T ss_pred             hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeE
Confidence            358999999999999999999999999999986  6777777764           3578899999998864

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.16  E-value=1.9e-11  Score=98.78  Aligned_cols=59  Identities=19%  Similarity=0.366  Sum_probs=53.7

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCcccee
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      +...++|+||||||+||+++.|+|.++.-++++   .+.+.++|++..+.++.++||..+|+
T Consensus        42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPT  103 (468)
T KOG4277|consen   42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPT  103 (468)
T ss_pred             cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCce
Confidence            578899999999999999999999999777654   58999999999999999999998875

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.15  E-value=6e-11  Score=78.65  Aligned_cols=60  Identities=22%  Similarity=0.540  Sum_probs=48.9

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCCCHHH
Q 031608           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKD  143 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l  143 (156)
                      .++++.+..|+..+|+++|+|+|+||++|+.+...+   .++.+.+..++.++.+|.++....
T Consensus         4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~   66 (82)
T PF13899_consen    4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPN   66 (82)
T ss_dssp             SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHH
T ss_pred             hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChh
Confidence            367888888888999999999999999999998877   455554445799999999875543

...

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.15  E-value=2.5e-10  Score=85.74  Aligned_cols=69  Identities=23%  Similarity=0.393  Sum_probs=49.1

Q ss_pred             cchhccccCCCCCCCccce-EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           59 DVRVEALWPDLSRPTSVEL-EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~-~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      ...++...|+|.++....- ..+. ...+        ..+++++|+|||+||++|+.+.|.+++++++   ++.++.|+.
T Consensus        33 ~~~vG~~ap~f~l~~~~G~~~~~~-~~~~--------~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~  100 (173)
T TIGR00385        33 SALIGKPVPAFPLAALREPLQAYT-PEAF--------IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDY  100 (173)
T ss_pred             chhcCCCCCCccccccCCCCcccC-HHHh--------cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEEC
Confidence            3456677888887754321 1221 1111        3689999999999999999999999998763   478888887


Q ss_pred             CC
Q 031608          138 NK  139 (156)
Q Consensus       138 d~  139 (156)
                      ++
T Consensus       101 ~~  102 (173)
T TIGR00385       101 KD  102 (173)
T ss_pred             CC
Confidence            54

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.14  E-value=7.7e-11  Score=99.37  Aligned_cols=73  Identities=19%  Similarity=0.405  Sum_probs=60.2

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCccce
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISVS  153 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~sv~  153 (156)
                      +..+. ..+|++++.   ..+++++|.|||+||++|+.+.|.++++++.+.+   ++.|+.+|++.+. +.. +++.++|
T Consensus       348 v~~l~-~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~P  421 (462)
T TIGR01130       348 VKVLV-GKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFP  421 (462)
T ss_pred             cEEee-CcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccC
Confidence            44444 558888875   5689999999999999999999999999999986   6999999998764 333 8888887


Q ss_pred             ec
Q 031608          154 IQ  155 (156)
Q Consensus       154 ~~  155 (156)
                      ..
T Consensus       422 t~  423 (462)
T TIGR01130       422 TI  423 (462)
T ss_pred             EE
Confidence            53

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.12  E-value=1.6e-10  Score=107.58  Aligned_cols=60  Identities=17%  Similarity=0.233  Sum_probs=49.2

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC---C------------------------CCHHHHHHh
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV---N------------------------KVSKDLVKR  147 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~---d------------------------~~~~l~~~~  147 (156)
                      .||++||+|||+||++|+.+.|.|++++++|++ ++.++.|..   |                        ...+++++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            599999999999999999999999999999976 488888852   2                        234566778


Q ss_pred             CCccceec
Q 031608          148 GNISVSIQ  155 (156)
Q Consensus       148 ~i~sv~~~  155 (156)
                      +|.++|+.
T Consensus       499 ~V~~iPt~  506 (1057)
T PLN02919        499 GVSSWPTF  506 (1057)
T ss_pred             CCCccceE
Confidence            88877764

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.11  E-value=1.1e-10  Score=94.27  Aligned_cols=68  Identities=29%  Similarity=0.455  Sum_probs=60.2

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHh----c-CCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF----D-TKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~----~-~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      .++++.++    .++..++|+|||+||+-.+.++|+|++.+..+    + +++++++|||+.+.+++.+|.|..+|+
T Consensus         3 ~~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPT   75 (375)
T KOG0912|consen    3 SENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPT   75 (375)
T ss_pred             cccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCce
Confidence            45778888    46999999999999999999999999988765    4 369999999999999999999998775

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.11  E-value=2.3e-10  Score=88.83  Aligned_cols=60  Identities=22%  Similarity=0.277  Sum_probs=49.6

Q ss_pred             CCcEEEEEeC---CCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCccceecC
Q 031608           97 SQPILIDWMA---SWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSIQI  156 (156)
Q Consensus        97 ~k~vlV~F~A---~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~~~  156 (156)
                      +...++.|++   +||++|+.+.|.+++++++++. .+.++.+|.+++++++++|+|.++|+.+
T Consensus        19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~   82 (215)
T TIGR02187        19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTI   82 (215)
T ss_pred             CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEE
Confidence            3444666887   9999999999999999999864 2556777777999999999999999753

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.10  E-value=1.9e-10  Score=88.57  Aligned_cols=43  Identities=16%  Similarity=0.207  Sum_probs=39.7

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .|+++||+|||+||++|+.+.|.|.+++++|.+ ++.++.|+++
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~   81 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS   81 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence            589999999999999999999999999999975 5999999874

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2.2e-10  Score=95.95  Aligned_cols=61  Identities=28%  Similarity=0.455  Sum_probs=57.7

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..+++++|.|||+||++|+.+.|.+++++..+.+.+.++.||++.+.+++.+|+|.+.|+.
T Consensus        45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl  105 (383)
T KOG0191|consen   45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTL  105 (383)
T ss_pred             ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEE
Confidence            5799999999999999999999999999999987899999999999999999999998864

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.07  E-value=6e-11  Score=102.21  Aligned_cols=82  Identities=18%  Similarity=0.360  Sum_probs=65.6

Q ss_pred             CCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECC--CCHH
Q 031608           68 DLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVN--KVSK  142 (156)
Q Consensus        68 ~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d--~~~~  142 (156)
                      ....|. .++..+ +.++|+..+.   .+.+-.+|.||++|||+|++++|.|++++++...   -+.+..|||.  .|..
T Consensus        33 tLy~~~-D~ii~L-d~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~  107 (606)
T KOG1731|consen   33 TLYSPD-DPIIEL-DVDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVK  107 (606)
T ss_pred             cccCCC-CCeEEe-ehhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhh
Confidence            445554 345555 4779999986   3446789999999999999999999999998753   4789999994  4889


Q ss_pred             HHHHhCCcccee
Q 031608          143 DLVKRGNISVSI  154 (156)
Q Consensus       143 l~~~~~i~sv~~  154 (156)
                      +|++|+|+..|.
T Consensus       108 lCRef~V~~~Pt  119 (606)
T KOG1731|consen  108 LCREFSVSGYPT  119 (606)
T ss_pred             hHhhcCCCCCce
Confidence            999999998764

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.05  E-value=3.9e-10  Score=81.67  Aligned_cols=47  Identities=21%  Similarity=0.511  Sum_probs=42.1

Q ss_pred             CCCcEEEEEeCC-CChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHH
Q 031608           96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSK  142 (156)
Q Consensus        96 ~~k~vlV~F~A~-WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~  142 (156)
                      .||+++|+||++ |||+|+...|.+.++++.|.+ ++.++.|..+.++.
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~   75 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP   75 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH
Confidence            699999999999 999999999999999988765 59999999887654

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.03  E-value=1.1e-09  Score=74.18  Aligned_cols=59  Identities=15%  Similarity=0.201  Sum_probs=53.2

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..-+.-|+++||++|....+.++++++.++ ++.+..+|.++.++++.+|||.++|..
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~   69 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAI   69 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEE
Confidence            35557788899999999999999999998876 599999999999999999999999875

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.03  E-value=1e-09  Score=83.69  Aligned_cols=66  Identities=20%  Similarity=0.284  Sum_probs=45.0

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEE
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD  136 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd  136 (156)
                      ..++...|++.+++..+ ..+...+    ..    ..|++++|+|||+||++|+.+.|.+.++.++++  +.++.++
T Consensus        46 ~~vG~~aP~f~l~d~~G-~~v~l~~----~~----~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is  111 (189)
T TIGR02661        46 PDVGDAAPIFNLPDFDG-EPVRIGG----SI----APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMIS  111 (189)
T ss_pred             CCCCCcCCCcEecCCCC-CEEeccc----hh----cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEe
Confidence            45566777887765422 2232111    00    358999999999999999999999999987654  3444444

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.01  E-value=9.1e-10  Score=79.50  Aligned_cols=60  Identities=12%  Similarity=0.142  Sum_probs=46.9

Q ss_pred             ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECC
Q 031608           79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d  138 (156)
                      .|....++++.++.|+..+|+++|+|+++||++|+++...+   .++.+....++..+.++.+
T Consensus         5 ~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d   67 (130)
T cd02960           5 DIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHE   67 (130)
T ss_pred             cccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEec
Confidence            35555689999999989999999999999999999998775   4444444435777777765

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=7.8e-10  Score=92.63  Aligned_cols=133  Identities=14%  Similarity=0.139  Sum_probs=86.6

Q ss_pred             hcccccccCCccCCCCCccccccCC-ceEEEeCCCccccccccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcC
Q 031608           18 REGKQQFQQPWSSGSSSCLLLQKNS-AFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQEL   96 (156)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~   96 (156)
                      +++-...+..|.+.|+|++.+-+.. ....+.+....+................... .++... +.++|+..+.   ..
T Consensus        87 ~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l-~~~~~~~~~~---~~  161 (383)
T KOG0191|consen   87 CDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKLVE-GEVFEL-TKDNFDETVK---DS  161 (383)
T ss_pred             chhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHHHHHHHHHHhhccccccccC-CceEEc-cccchhhhhh---cc
Confidence            3343445667899999999766555 2233333211111111111111111111111 123344 4567887775   46


Q ss_pred             CCcEEEEEeCCCChhHHhhhHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..++|.||||||++|+.++|.+++++..+.  ..+.++.+|++....++.+++|.+.|+.
T Consensus       162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~  222 (383)
T KOG0191|consen  162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTL  222 (383)
T ss_pred             CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceE
Confidence            8889999999999999999999999999885  4699999999999999999999988763

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.00  E-value=1.5e-09  Score=73.66  Aligned_cols=59  Identities=25%  Similarity=0.441  Sum_probs=50.2

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc-CCeEEEEEECCCC-----------------------HHHHHHhCCcc
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV-----------------------SKDLVKRGNIS  151 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~-~~v~~~~vd~d~~-----------------------~~l~~~~~i~s  151 (156)
                      .+++++|.||++||++|+...+.+.++.+++. .++.++.|+++..                       ..+.+.|++.+
T Consensus        18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (116)
T cd02966          18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG   97 (116)
T ss_pred             CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence            48999999999999999999999999999985 3599999999886                       56677777766


Q ss_pred             cee
Q 031608          152 VSI  154 (156)
Q Consensus       152 v~~  154 (156)
                      +|.
T Consensus        98 ~P~  100 (116)
T cd02966          98 LPT  100 (116)
T ss_pred             cce
Confidence            553

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.98  E-value=2.1e-09  Score=79.75  Aligned_cols=45  Identities=16%  Similarity=0.555  Sum_probs=40.2

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV  140 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~  140 (156)
                      .+++++|+||++||++|+...|.+.++++++.+ ++.++.|++++.
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~  105 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDET  105 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            589999999999999999999999999999975 488999998643

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.97  E-value=1.7e-09  Score=79.50  Aligned_cols=42  Identities=24%  Similarity=0.177  Sum_probs=38.5

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .||+++|+|||+||+ |+.+.|.|++++++|.+ ++.++.|+++
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            489999999999999 99999999999999974 6999999874

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.97  E-value=1.8e-09  Score=72.36  Aligned_cols=58  Identities=29%  Similarity=0.561  Sum_probs=51.7

Q ss_pred             CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC-CCHHHHHHhC--Ccccee
Q 031608           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRG--NISVSI  154 (156)
Q Consensus        97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d-~~~~l~~~~~--i~sv~~  154 (156)
                      +++++++||++||++|+.+.|.+.++++++...+.++.+|.. ..+++...++  +..++.
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~   92 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPT   92 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCe
Confidence            789999999999999999999999999999766899999997 7889888888  666553

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.97  E-value=1.4e-09  Score=85.85  Aligned_cols=43  Identities=21%  Similarity=0.201  Sum_probs=39.8

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .|+++||+|||+||++|+.+.|.|.+++++|.+ ++.++.|+++
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d  141 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN  141 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence            489999999999999999999999999999975 5999999975

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.97  E-value=1.9e-09  Score=76.58  Aligned_cols=42  Identities=21%  Similarity=0.408  Sum_probs=38.6

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV  137 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~  137 (156)
                      .|++++|+|||+||++|+...|.|+++++++.+ ++.++.|+.
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~   64 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS   64 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence            489999999999999999999999999999975 589999876

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.92  E-value=3.1e-09  Score=78.08  Aligned_cols=42  Identities=17%  Similarity=0.077  Sum_probs=39.1

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV  137 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~  137 (156)
                      .||++||+|||+||++|+...|.+.+++++|++ ++.++.|++
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~   63 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC   63 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence            589999999999999999999999999999975 699999996

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.90  E-value=1e-09  Score=75.97  Aligned_cols=62  Identities=16%  Similarity=0.343  Sum_probs=46.0

Q ss_pred             hcCCCcEEEEEeCCCChhHHhhhHHHHHH---HHHhcCCeEEEEEECCCC--------------------HHHHHHhCCc
Q 031608           94 QELSQPILIDWMASWCRKCIYLKPKLEKL---AAEFDTKLKFYYVDVNKV--------------------SKDLVKRGNI  150 (156)
Q Consensus        94 ~~~~k~vlV~F~A~WC~~Ck~~~p~l~~l---a~~~~~~v~~~~vd~d~~--------------------~~l~~~~~i~  150 (156)
                      +.++++++|.||++||+.|+++.+.+.+.   ...+.+++.++.++++..                    .++++.+||.
T Consensus         2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~   81 (112)
T PF13098_consen    2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN   81 (112)
T ss_dssp             ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred             CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence            36799999999999999999999999854   444444688999998753                    3578889988


Q ss_pred             cceec
Q 031608          151 SVSIQ  155 (156)
Q Consensus       151 sv~~~  155 (156)
                      +.|+.
T Consensus        82 gtPt~   86 (112)
T PF13098_consen   82 GTPTI   86 (112)
T ss_dssp             SSSEE
T ss_pred             ccCEE
Confidence            88764

...

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.89  E-value=4.6e-09  Score=73.74  Aligned_cols=57  Identities=19%  Similarity=0.432  Sum_probs=43.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC---------------------CCCHHHHHHhCCcccee
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV---------------------NKVSKDLVKRGNISVSI  154 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~---------------------d~~~~l~~~~~i~sv~~  154 (156)
                      .+++++|+||++||++|+.+.|.+.++++++.  +..+.+|-                     |.+.++++.|++.++|+
T Consensus        19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~   96 (123)
T cd03011          19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA   96 (123)
T ss_pred             CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence            57999999999999999999999999987743  33333322                     23456778888887775

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.88  E-value=2.9e-09  Score=81.19  Aligned_cols=45  Identities=7%  Similarity=0.047  Sum_probs=38.4

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEE------EEEECCCCHHH
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKF------YYVDVNKVSKD  143 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~------~~vd~d~~~~l  143 (156)
                      .||+.+|+|||+||++|+.++|.+++++.+   ++.+      +.||.|+...-
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~  108 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVG  108 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhh
Confidence            699999999999999999999999999653   4677      88998875433

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PLN02412 probable glutathione peroxidase

Probab=98.87  E-value=4.2e-09  Score=78.82  Aligned_cols=43  Identities=19%  Similarity=0.146  Sum_probs=39.8

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .||++||+|||+||++|+.+.|.|.++.++|.+ ++.++.|+++
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~   71 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN   71 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence            489999999999999999999999999999975 5999999975

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.87  E-value=8.8e-09  Score=72.12  Aligned_cols=71  Identities=11%  Similarity=0.039  Sum_probs=58.8

Q ss_pred             hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECC--CCHHHHHHhCCccceec
Q 031608           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVN--KVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d--~~~~l~~~~~i~sv~~~  155 (156)
                      .|++.+..|+..+|+++|+|+++||++|+.+....   +++.+.+..++.++.+|++  +..+++..|++.++|+-
T Consensus         5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~   80 (114)
T cd02958           5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI   80 (114)
T ss_pred             CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence            67888888888999999999999999999997643   5566666557889999997  46688999999998864

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.85  E-value=9.6e-09  Score=76.81  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=58.8

Q ss_pred             ccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCC-ChhHHhhhHHHHHHHHHhcCCeEEEEEE
Q 031608           58 RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVD  136 (156)
Q Consensus        58 r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~W-C~~Ck~~~p~l~~la~~~~~~v~~~~vd  136 (156)
                      .....+...|++.++.. ....+... ++         .||+++|+||++| |++|..+.|.|.++++++. ++.++.|+
T Consensus        16 ~~~~~G~~~P~f~l~~~-~g~~v~l~-~~---------~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs   83 (167)
T PRK00522         16 SLPQVGDKAPDFTLVAN-DLSDVSLA-DF---------AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCIS   83 (167)
T ss_pred             CCCCCCCCCCCeEEEcC-CCcEEehH-Hh---------CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEe
Confidence            34456777788877653 22334322 23         4899999999999 9999999999999999985 69999999


Q ss_pred             CCCC---HHHHHHhCCc
Q 031608          137 VNKV---SKDLVKRGNI  150 (156)
Q Consensus       137 ~d~~---~~l~~~~~i~  150 (156)
                      .|..   .+.++++++.
T Consensus        84 ~D~~~~~~~f~~~~~~~  100 (167)
T PRK00522         84 ADLPFAQKRFCGAEGLE  100 (167)
T ss_pred             CCCHHHHHHHHHhCCCC
Confidence            8753   3445555553

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.84  E-value=5.2e-09  Score=79.54  Aligned_cols=37  Identities=19%  Similarity=0.528  Sum_probs=33.1

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      +|+|||+||++|+++.|.+++++++|+  +.++.|++|+
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~  109 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDG  109 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCC
Confidence            778999999999999999999999985  7888888764

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.80  E-value=1.6e-08  Score=72.98  Aligned_cols=44  Identities=16%  Similarity=0.177  Sum_probs=39.7

Q ss_pred             CCCcEEEEEeCCC-ChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031608           96 LSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV  140 (156)
Q Consensus        96 ~~k~vlV~F~A~W-C~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~  140 (156)
                      .||+++|+||++| |++|+...|.|.++++++. ++.++.|+.|..
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~   69 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLP   69 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCH
Confidence            4899999999999 6999999999999999986 699999998763

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.74  E-value=2.1e-08  Score=87.20  Aligned_cols=75  Identities=23%  Similarity=0.418  Sum_probs=58.4

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHH---HHHHHhcCCeEEEEEECCCC----HHHHHHhCCc
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVNKV----SKDLVKRGNI  150 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~---~la~~~~~~v~~~~vd~d~~----~~l~~~~~i~  150 (156)
                      ..+.+..++++.+++  +.+|||++||||+||-.||.+++..-   +...+.. ++++.++|.+++    .++.++|++.
T Consensus       457 q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~  533 (569)
T COG4232         457 QPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVF  533 (569)
T ss_pred             hccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCC
Confidence            556666689999975  44569999999999999999999863   3344444 599999999753    3667899999


Q ss_pred             cceec
Q 031608          151 SVSIQ  155 (156)
Q Consensus       151 sv~~~  155 (156)
                      ++|+-
T Consensus       534 G~P~~  538 (569)
T COG4232         534 GVPTY  538 (569)
T ss_pred             CCCEE
Confidence            98864

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.73  E-value=3.4e-08  Score=69.08  Aligned_cols=68  Identities=16%  Similarity=0.356  Sum_probs=52.5

Q ss_pred             ccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCC-CChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC
Q 031608           63 EALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV  140 (156)
Q Consensus        63 ~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~-WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~  140 (156)
                      |..+|++.+++.. ...++. +++         .|++++|.||++ ||++|+...+.+.++.++++. ++.++.|+.+..
T Consensus         2 G~~~P~f~l~~~~-g~~~~l-~~l---------~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~   70 (124)
T PF00578_consen    2 GDKAPDFTLTDSD-GKTVSL-SDL---------KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP   70 (124)
T ss_dssp             TSBGGCEEEETTT-SEEEEG-GGG---------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred             cCCCCCcEeECCC-CCEEEH-HHH---------CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence            4566777666543 233432 233         489999999999 999999999999999999875 699999999764


Q ss_pred             H
Q 031608          141 S  141 (156)
Q Consensus       141 ~  141 (156)
                      .
T Consensus        71 ~   71 (124)
T PF00578_consen   71 E   71 (124)
T ss_dssp             H
T ss_pred             c
Confidence            4

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>smart00594 UAS UAS domain

Probab=98.72  E-value=7.6e-08  Score=68.44  Aligned_cols=72  Identities=11%  Similarity=0.039  Sum_probs=58.5

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCC--CHHHHHHhCCccceec
Q 031608           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNISVSIQ  155 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~--~~~l~~~~~i~sv~~~  155 (156)
                      ..+++.+..|+..+|+++|+|+++||++|+.+....   .++.+.+..++.+..+|++.  ..+++..|++.++|+-
T Consensus        14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~   90 (122)
T smart00594       14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYV   90 (122)
T ss_pred             CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEE
Confidence            378888888888999999999999999999997654   44555555568998999864  5678999999998863

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.69  E-value=4.2e-08  Score=74.35  Aligned_cols=43  Identities=14%  Similarity=0.149  Sum_probs=36.7

Q ss_pred             CCCcE-EEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           96 LSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~v-lV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .||++ |+.+||+||++|+.++|.|++++++|.+ ++.++.|+++
T Consensus        39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~   83 (183)
T PTZ00256         39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN   83 (183)
T ss_pred             CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence            48865 4556999999999999999999999975 5999999874

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.68  E-value=8.6e-08  Score=69.00  Aligned_cols=47  Identities=21%  Similarity=0.289  Sum_probs=37.7

Q ss_pred             CCcEEEE-EeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHH
Q 031608           97 SQPILID-WMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKD  143 (156)
Q Consensus        97 ~k~vlV~-F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l  143 (156)
                      +++++|. ||++||++|+...|.|.++.+++.+ ++.++.|+.+.....
T Consensus        23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~   71 (149)
T cd02970          23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKL   71 (149)
T ss_pred             CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHH
Confidence            4555555 5699999999999999999999853 699999998865443

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>TIGR03137 AhpC peroxiredoxin

Probab=98.66  E-value=6.8e-08  Score=73.50  Aligned_cols=70  Identities=13%  Similarity=0.139  Sum_probs=52.2

Q ss_pred             hhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031608           61 RVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD  136 (156)
Q Consensus        61 ~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd  136 (156)
                      .++...|+|.+++.  .....+.. .+|         .||++||+|| ++||++|..+.|.|.++.+++.+ ++.++.|+
T Consensus         3 ~~G~~aP~f~l~~~~~g~~~~~sl-~d~---------~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS   72 (187)
T TIGR03137         3 LINTEIKPFKATAYHNGEFVEVTD-EDV---------KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVS   72 (187)
T ss_pred             ccCCcCCCcEeeeccCCceeEecH-HHH---------CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence            34566778877752  12223432 233         5899999999 99999999999999999998863 68899998


Q ss_pred             CCCC
Q 031608          137 VNKV  140 (156)
Q Consensus       137 ~d~~  140 (156)
                      .|..
T Consensus        73 ~D~~   76 (187)
T TIGR03137        73 TDTH   76 (187)
T ss_pred             CCCH
Confidence            8763

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.64  E-value=1.8e-07  Score=69.70  Aligned_cols=44  Identities=14%  Similarity=0.369  Sum_probs=40.2

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~  139 (156)
                      .++++||.||++||+.|..+.|.+.++.+++.+ ++.|+.|+.|.
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~   68 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSND   68 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCc
Confidence            589999999999999999999999999999974 69999998864

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.58  E-value=1.2e-07  Score=68.68  Aligned_cols=44  Identities=11%  Similarity=0.243  Sum_probs=38.6

Q ss_pred             C-CcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC
Q 031608           97 S-QPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV  140 (156)
Q Consensus        97 ~-k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~  140 (156)
                      | ++++|.|| ++||+.|....|.++++.+++.+ ++.++.|+.+..
T Consensus        27 g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~   73 (149)
T cd03018          27 GRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSP   73 (149)
T ss_pred             CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCH
Confidence            5 88888887 99999999999999999999964 699999988753

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=7.3e-08  Score=74.79  Aligned_cols=74  Identities=23%  Similarity=0.376  Sum_probs=64.9

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCcc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNIS  151 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~s  151 (156)
                      ..+..+..+.+++.+.+  +..+.++|.|+|.|.+.|+...|.+.+++.+|.. .+.|++||+...++.+.+|+|..
T Consensus       125 ~ikyf~~~q~~deel~r--nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~  199 (265)
T KOG0914|consen  125 TIKYFTNMQLEDEELDR--NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISL  199 (265)
T ss_pred             heeeecchhhHHHHhcc--CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeecc
Confidence            45666667778888865  6678899999999999999999999999999975 59999999999999999999874

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.57  E-value=1.7e-07  Score=67.16  Aligned_cols=44  Identities=14%  Similarity=0.401  Sum_probs=39.2

Q ss_pred             CCCcEEEEEeCCCChh-HHhhhHHHHHHHHHhcC----CeEEEEEECCC
Q 031608           96 LSQPILIDWMASWCRK-CIYLKPKLEKLAAEFDT----KLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~-Ck~~~p~l~~la~~~~~----~v~~~~vd~d~  139 (156)
                      .|++++|.||++||++ |....|.+.++.+++.+    ++.++.|+.|.
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~   69 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP   69 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence            4899999999999998 99999999999998864    39999998864

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.55  E-value=2.5e-07  Score=55.22  Aligned_cols=54  Identities=31%  Similarity=0.471  Sum_probs=43.9

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHH---HhCCccceec
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV---KRGNISVSIQ  155 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~---~~~i~sv~~~  155 (156)
                      ++.||++||++|+.+.+.+.++ +....++.+..+|++...+...   .+++.++|..
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~   57 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTL   57 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEE
Confidence            4789999999999999999998 4444469999999998776654   6787777753

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.54  E-value=1.9e-07  Score=69.88  Aligned_cols=45  Identities=9%  Similarity=0.066  Sum_probs=40.4

Q ss_pred             CCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC
Q 031608           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV  140 (156)
Q Consensus        96 ~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~  140 (156)
                      .|+++||+|| ++||++|....|.|.++++++.+ ++.++.|+.|..
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~   74 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH   74 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH
Confidence            4899999999 89999999999999999999964 689999998764

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.52  E-value=2.5e-07  Score=70.55  Aligned_cols=42  Identities=19%  Similarity=0.162  Sum_probs=38.0

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .||++||.|||+||+.|+ ..|.|++++++|.+ ++.++.+.++
T Consensus        24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence            589999999999999997 58999999999975 6999999885

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.51  E-value=1.7e-07  Score=69.46  Aligned_cols=45  Identities=18%  Similarity=0.477  Sum_probs=39.7

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCC---eEEEEEECCCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK---LKFYYVDVNKV  140 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~---v~~~~vd~d~~  140 (156)
                      .||.|.+.|.|.||+|||.+-|++.+++++..++   +.++-|+.|.+
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~   79 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRD   79 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCC
Confidence            5899999999999999999999999999888654   88888888764

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.49  E-value=4.1e-07  Score=57.50  Aligned_cols=49  Identities=27%  Similarity=0.389  Sum_probs=39.3

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHhCCccceec
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----DLVKRGNISVSIQ  155 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~----l~~~~~i~sv~~~  155 (156)
                      +..|+++||++|++..+.|++.      ++.+..+|++++++    +.+.+|+.++|+-
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~   54 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVI   54 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEE
Confidence            4679999999999999888652      47888999987665    4566899998864

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.45  E-value=4.1e-07  Score=59.52  Aligned_cols=52  Identities=19%  Similarity=0.199  Sum_probs=40.1

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH-----HHHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK-----DLVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~-----l~~~~~i~sv~~  154 (156)
                      ++.|+++||++|+.+.+.++++.  .++.+.++.+|.+++.+     +.+.+|+.++|+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~   57 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPN   57 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCe
Confidence            46799999999999999999986  33347888888875543     555568878775

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.44  E-value=3.9e-07  Score=68.13  Aligned_cols=61  Identities=18%  Similarity=0.300  Sum_probs=44.0

Q ss_pred             HHHHHHhhcCCCcEEEEEeCCCChhHHhhhHH-H--HHHHHHhcCCeEEEEEECCCCHHHHHHh
Q 031608           87 DQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSKDLVKR  147 (156)
Q Consensus        87 ~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~-l--~~la~~~~~~v~~~~vd~d~~~~l~~~~  147 (156)
                      ++.++.|+.++|+++|+++++||..|+.|... |  .++++.++.++.-++||.++.|++...|
T Consensus        27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y   90 (163)
T PF03190_consen   27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIY   90 (163)
T ss_dssp             HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHH
Confidence            45555556789999999999999999999853 3  5566666656899999999999998877

; PDB: 3IRA_A.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.44  E-value=6.1e-07  Score=57.64  Aligned_cols=49  Identities=24%  Similarity=0.522  Sum_probs=37.8

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHh-----CCccceec
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR-----GNISVSIQ  155 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~-----~i~sv~~~  155 (156)
                      ++.||++||++|+++++.|.++.      +.+-.+|++++++....+     ++.++|+-
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i   55 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV   55 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE
Confidence            56799999999999999987653      456678888777665553     78888763

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.40  E-value=6.6e-07  Score=65.43  Aligned_cols=71  Identities=15%  Similarity=0.225  Sum_probs=50.6

Q ss_pred             hhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCC-CChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        61 ~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~-WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      ..+...|++..+...+ ..+. ..++         .|+++||+||++ ||+.|....+.+.++.+++.+ ++.++.|+.|
T Consensus         5 ~~g~~~p~f~l~~~~G-~~~~-l~~~---------~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d   73 (154)
T PRK09437          5 KAGDIAPKFSLPDQDG-EQVS-LTDF---------QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD   73 (154)
T ss_pred             CCCCcCCCcEeeCCCC-CEEe-HHHh---------CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3455666776655322 2332 2222         589999999986 678899999999999998864 5999999987


Q ss_pred             CCHH
Q 031608          139 KVSK  142 (156)
Q Consensus       139 ~~~~  142 (156)
                      ...+
T Consensus        74 ~~~~   77 (154)
T PRK09437         74 KPEK   77 (154)
T ss_pred             CHHH
Confidence            6433

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.39  E-value=1.5e-06  Score=61.88  Aligned_cols=75  Identities=16%  Similarity=0.398  Sum_probs=50.3

Q ss_pred             CChhhHHHHHHHhhcCCCcEEEEEeC-------CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH------HHHH--
Q 031608           81 NDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS------KDLV--  145 (156)
Q Consensus        81 ~~~~~~~~~l~~a~~~~k~vlV~F~A-------~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~------~l~~--  145 (156)
                      ...++|.+.+.....++++++|.|++       +|||.|+...|.+++.-...+.+..|+.|.+.+-+      .--+  
T Consensus         3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~   82 (119)
T PF06110_consen    3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD   82 (119)
T ss_dssp             ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred             cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence            34567888887555678999999986       59999999999999988877767899999885422      1223  


Q ss_pred             -HhCCccceec
Q 031608          146 -KRGNISVSIQ  155 (156)
Q Consensus       146 -~~~i~sv~~~  155 (156)
                       ++++.+||+-
T Consensus        83 p~~~l~~IPTL   93 (119)
T PF06110_consen   83 PDLKLKGIPTL   93 (119)
T ss_dssp             -CC---SSSEE
T ss_pred             ceeeeeecceE
Confidence             3788888763

; PDB: 1V9W_A 1WOU_A.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.38  E-value=6.1e-07  Score=68.56  Aligned_cols=70  Identities=9%  Similarity=0.071  Sum_probs=52.3

Q ss_pred             hhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031608           61 RVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD  136 (156)
Q Consensus        61 ~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd  136 (156)
                      .++..+|+|..+..  .....++. .++         .||++++.|| ++||+.|..+.+.|.++.+++.+ ++.++.|+
T Consensus         3 ~~~~~~p~f~~~~~~~g~~~~v~L-~d~---------~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS   72 (187)
T PRK10382          3 LINTKIKPFKNQAFKNGEFIEVTE-KDT---------EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVS   72 (187)
T ss_pred             ccCCcCCCcEEEEEeCCcceEEEH-HHh---------CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            45666777776654  22333321 122         5889999999 99999999999999999999964 68999999


Q ss_pred             CCCC
Q 031608          137 VNKV  140 (156)
Q Consensus       137 ~d~~  140 (156)
                      .|..
T Consensus        73 ~D~~   76 (187)
T PRK10382         73 TDTH   76 (187)
T ss_pred             CCCH
Confidence            8763

>PRK13191 putative peroxiredoxin; Provisional

Probab=98.34  E-value=9.9e-07  Score=68.76  Aligned_cols=72  Identities=13%  Similarity=0.117  Sum_probs=53.0

Q ss_pred             cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEE-EEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILI-DWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD  136 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV-~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd  136 (156)
                      ...++..+|+|..++...  .+...+.+         .||+++| .||++||+.|..+.+.|.++++++.. ++.++.|+
T Consensus         6 ~~~iG~~aPdF~l~~~~G--~~~l~~~~---------~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS   74 (215)
T PRK13191          6 IPLIGEKFPEMEVITTHG--KIKLPDDY---------KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLS   74 (215)
T ss_pred             cccCCCcCCCCEeecCCC--CEEcHHHh---------CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence            345677788887775432  22222222         4777665 88999999999999999999999963 69999999


Q ss_pred             CCCCH
Q 031608          137 VNKVS  141 (156)
Q Consensus       137 ~d~~~  141 (156)
                      +|...
T Consensus        75 ~Ds~~   79 (215)
T PRK13191         75 VDSNI   79 (215)
T ss_pred             CCCHH
Confidence            98643

>PRK15000 peroxidase; Provisional

Probab=98.32  E-value=1.1e-06  Score=67.68  Aligned_cols=73  Identities=14%  Similarity=0.137  Sum_probs=51.8

Q ss_pred             hccccCCCCCCCccc-eEecCChhhHHHHHHHhhcCCCcEEEEEeC-CCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           62 VEALWPDLSRPTSVE-LEPINDSDHLDQILLRAQELSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        62 ~~~~~~~~~~p~~~~-~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A-~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      ++..+|+|..++... ...+. .-++.+..     .|+++++.||+ +||+.|..+.|.|.++++++.. ++.++.|++|
T Consensus         4 vg~~aPdF~~~~~~~~g~~~~-~~~l~~~~-----~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D   77 (200)
T PRK15000          4 VTRQAPDFTAAAVLGSGEIVD-KFNFKQHT-----NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD   77 (200)
T ss_pred             CCCcCCCCEeecccCCCceee-eeeHHHHh-----CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence            566677776664311 11111 11332222     58999999999 5999999999999999999974 6999999998


Q ss_pred             CC
Q 031608          139 KV  140 (156)
Q Consensus       139 ~~  140 (156)
                      ..
T Consensus        78 ~~   79 (200)
T PRK15000         78 SE   79 (200)
T ss_pred             CH
Confidence            53

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.31  E-value=1.5e-06  Score=62.15  Aligned_cols=46  Identities=15%  Similarity=0.196  Sum_probs=39.8

Q ss_pred             CCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCH
Q 031608           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS  141 (156)
Q Consensus        96 ~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~  141 (156)
                      .|++++|.|| +.||+.|....|.+.++.+++.+ ++.++.|..+...
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~   69 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVE   69 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence            4899999999 58999999999999999988864 5899999887543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.30  E-value=1.3e-06  Score=67.38  Aligned_cols=68  Identities=15%  Similarity=0.252  Sum_probs=49.4

Q ss_pred             hhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEE-EEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILI-DWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        61 ~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV-~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .++..+|+|..+....  .+. ..++         .|+++++ .||++||+.|..+.+.|.++++++.+ ++.++.|++|
T Consensus         3 ~vG~~aP~F~~~~~~g--~v~-l~d~---------~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D   70 (202)
T PRK13190          3 KLGQKAPDFTVNTTKG--PID-LSKY---------KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD   70 (202)
T ss_pred             CCCCCCCCcEEecCCC--cEe-HHHh---------CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3456667777665322  222 1122         4776665 68999999999999999999999864 6899999998


Q ss_pred             CC
Q 031608          139 KV  140 (156)
Q Consensus       139 ~~  140 (156)
                      ..
T Consensus        71 ~~   72 (202)
T PRK13190         71 SI   72 (202)
T ss_pred             CH
Confidence            63

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.29  E-value=1.7e-06  Score=67.43  Aligned_cols=69  Identities=13%  Similarity=0.173  Sum_probs=51.3

Q ss_pred             hhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcE-EEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        61 ~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~v-lV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      +++..+|+|..++... . +...+++         .|+++ |+.|||+||+.|..+.+.|.++++++.. ++.++.|++|
T Consensus         3 ~~Gd~aPdF~l~t~~G-~-~~~~~~~---------~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D   71 (215)
T PRK13599          3 LLGEKFPSMEVVTTQG-V-KRLPEDY---------AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD   71 (215)
T ss_pred             CCCCCCCCCEeECCCC-c-EecHHHH---------CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4566778887765432 1 2222233         47764 6799999999999999999999999964 6999999998


Q ss_pred             CC
Q 031608          139 KV  140 (156)
Q Consensus       139 ~~  140 (156)
                      ..
T Consensus        72 ~~   73 (215)
T PRK13599         72 QV   73 (215)
T ss_pred             CH
Confidence            74

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.28  E-value=2e-06  Score=61.35  Aligned_cols=45  Identities=16%  Similarity=0.179  Sum_probs=39.6

Q ss_pred             CCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhc-CCeEEEEEECCCC
Q 031608           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV  140 (156)
Q Consensus        96 ~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~-~~v~~~~vd~d~~  140 (156)
                      .|++++|.|| +.||+.|....|.+.++++++. .++.|+.|..+..
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~   67 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP   67 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence            4899999999 7899999999999999999984 3689999998753

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=98.22  E-value=3e-06  Score=67.91  Aligned_cols=75  Identities=16%  Similarity=0.147  Sum_probs=53.4

Q ss_pred             ccccchhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeE
Q 031608           56 ARRDVRVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLK  131 (156)
Q Consensus        56 ~~r~~~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~  131 (156)
                      ..+...++..+|+|.++..  .....+.    +.+..     .|+++|+.|| ++||++|..+.|.|.++++++.+ ++.
T Consensus        64 ~~~~~~vGd~aPdF~l~~~~~g~~~~vs----Lsd~~-----kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~  134 (261)
T PTZ00137         64 TVTSSLVGKLMPSFKGTALLNDDLVQFN----SSDYF-----KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVK  134 (261)
T ss_pred             ccccccCCCCCCCCEeecccCCCceEEe----HHHHc-----CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCE
Confidence            3444567777777776542  1112232    22222     4778888887 99999999999999999999964 589


Q ss_pred             EEEEECCC
Q 031608          132 FYYVDVNK  139 (156)
Q Consensus       132 ~~~vd~d~  139 (156)
                      ++.|++|.
T Consensus       135 VigIS~Ds  142 (261)
T PTZ00137        135 VLGVSVDS  142 (261)
T ss_pred             EEEEECCC
Confidence            99999986

>PRK13189 peroxiredoxin; Provisional

Probab=98.20  E-value=2.7e-06  Score=66.62  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=51.9

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcE-EEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV  137 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~v-lV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~  137 (156)
                      +.++..+|+|..++...  .+...+.+         .|+++ |+.||++||+.|..+.+.|.++++++.. ++.++.|++
T Consensus         9 ~~vG~~aPdF~~~~~~g--~~~l~d~~---------~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~   77 (222)
T PRK13189          9 PLIGDKFPEFEVKTTHG--PIKLPDDY---------KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSI   77 (222)
T ss_pred             ccCCCcCCCcEeEcCCC--CEeeHHHh---------CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence            45677888888776432  12222222         47754 5588999999999999999999999964 689999999


Q ss_pred             CCCH
Q 031608          138 NKVS  141 (156)
Q Consensus       138 d~~~  141 (156)
                      |...
T Consensus        78 D~~~   81 (222)
T PRK13189         78 DQVF   81 (222)
T ss_pred             CCHH
Confidence            8643

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=7.9e-06  Score=57.88  Aligned_cols=58  Identities=19%  Similarity=0.458  Sum_probs=48.2

Q ss_pred             CChhhHHHHHHHhhcCCCcEEEEEeC--------CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608           81 NDSDHLDQILLRAQELSQPILIDWMA--------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus        81 ~~~~~~~~~l~~a~~~~k~vlV~F~A--------~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      ...+.|++.++.. .+++.++|.|++        ||||.|.+..|.+.+..+..+.++.|+.|++.+
T Consensus        10 ~g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~   75 (128)
T KOG3425|consen   10 PGYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN   75 (128)
T ss_pred             chHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC
Confidence            4456777777653 356779999997        799999999999999998888789999999965

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=98.14  E-value=4.5e-06  Score=64.29  Aligned_cols=43  Identities=28%  Similarity=0.347  Sum_probs=37.1

Q ss_pred             Cc-EEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC
Q 031608           98 QP-ILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV  140 (156)
Q Consensus        98 k~-vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~  140 (156)
                      ++ +|+.||++||+.|..+.+.|.++++++.+ ++.++.|++|..
T Consensus        26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~   70 (203)
T cd03016          26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSV   70 (203)
T ss_pred             CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence            54 45689999999999999999999999964 699999998863

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.07  E-value=5.9e-06  Score=59.58  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=42.1

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHh---CCccceecC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR---GNISVSIQI  156 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~---~i~sv~~~~  156 (156)
                      ..+..++-|..+|||.|...-|.+.++++..+ ++.+-.+..|+++++..+|   |..+||+.|
T Consensus        40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I  102 (129)
T PF14595_consen   40 QKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFI  102 (129)
T ss_dssp             -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEE
T ss_pred             CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEE
Confidence            45667888999999999999999999999865 5787778888888887665   677887754

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=98.03  E-value=1.1e-05  Score=61.88  Aligned_cols=72  Identities=6%  Similarity=0.096  Sum_probs=52.1

Q ss_pred             chhccccCCCCCCCc---cceEecCChhhHHHHHHHhhcCCCcEEEEEeC-CCChhHHhhhHHHHHHHHHhcC-CeEEEE
Q 031608           60 VRVEALWPDLSRPTS---VELEPINDSDHLDQILLRAQELSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFDT-KLKFYY  134 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~---~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A-~WC~~Ck~~~p~l~~la~~~~~-~v~~~~  134 (156)
                      ..++..+|+|..++.   .....+. ..++         .|++++|.||+ +||+.|..+.+.|.++++++.+ ++.++.
T Consensus         6 ~~~G~~aPdF~~~~~~~~~~~~~v~-l~d~---------~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~   75 (199)
T PTZ00253          6 AKINHPAPSFEEVALMPNGSFKKIS-LSSY---------KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLA   75 (199)
T ss_pred             cccCCcCCCCEeeccccCCCCcEEe-HHHH---------CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE
Confidence            345667777775442   1222332 1223         48999999995 8899999999999999999974 699999


Q ss_pred             EECCCCH
Q 031608          135 VDVNKVS  141 (156)
Q Consensus       135 vd~d~~~  141 (156)
                      |++|...
T Consensus        76 IS~d~~~   82 (199)
T PTZ00253         76 CSMDSEY   82 (199)
T ss_pred             EeCCCHH
Confidence            9998643

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.01  E-value=3.4e-05  Score=60.17  Aligned_cols=65  Identities=17%  Similarity=0.187  Sum_probs=53.4

Q ss_pred             HHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC-----------CCHHHHHHhCCcccee
Q 031608           86 LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-----------KVSKDLVKRGNISVSI  154 (156)
Q Consensus        86 ~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d-----------~~~~l~~~~~i~sv~~  154 (156)
                      -++++..  ..++.-|+.||.+.|+.|..+.|++..++++|+  +.++.|++|           .+..+++++||..+|.
T Consensus       111 ~~~~l~~--la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pa  186 (215)
T PF13728_consen  111 RDKALKQ--LAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPA  186 (215)
T ss_pred             HHHHHHH--HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCE
Confidence            3444444  347888999999999999999999999999995  788888887           4688999999987764

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=4.2e-06  Score=65.14  Aligned_cols=71  Identities=11%  Similarity=0.152  Sum_probs=60.9

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..+....+|  ..    ..++.+++.|||+||.+|+.+.-.+..+++... ++.+++.+.+..++++..+.+..++..
T Consensus         4 ~~i~~~~~f--~~----~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-~~~~~k~~a~~~~eis~~~~v~~vp~~   74 (227)
T KOG0911|consen    4 QFIVFQEQF--LD----QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-NAQFLKLEAEEFPEISNLIAVEAVPYF   74 (227)
T ss_pred             eeehhHHHH--HH----hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-hheeeeehhhhhhHHHHHHHHhcCcee
Confidence            445556666  22    368999999999999999999999999999884 699999999999999999999888764

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.92  E-value=4e-05  Score=50.74  Aligned_cols=54  Identities=24%  Similarity=0.337  Sum_probs=41.4

Q ss_pred             EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH----HHHHHhC--Ccccee
Q 031608          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----KDLVKRG--NISVSI  154 (156)
Q Consensus       100 vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~----~l~~~~~--i~sv~~  154 (156)
                      -++.|+.+||+.|++....|+++..++. ++.+..+|++.++    ++....+  +.++|+
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~   61 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQ   61 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCE
Confidence            4678999999999999999999987764 5889999998653    4444344  366664

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.86  E-value=2.2e-06  Score=67.20  Aligned_cols=71  Identities=25%  Similarity=0.361  Sum_probs=57.2

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCcccee
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      .+.| +.+++..++.     |. .+|.|+|+|||.|+.+.|.++..+.--.+ +|.+.+||+..++-+.-+|-++.+++
T Consensus        26 ~~~~-~eenw~~~l~-----ge-wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLpt   97 (248)
T KOG0913|consen   26 LTRI-DEENWKELLT-----GE-WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPT   97 (248)
T ss_pred             eEEe-cccchhhhhc-----hH-HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecce
Confidence            4444 4668888882     44 68999999999999999999998865444 69999999999998888887776654

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.81  E-value=8e-05  Score=46.67  Aligned_cols=48  Identities=25%  Similarity=0.312  Sum_probs=35.5

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHh----CCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR----GNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~----~i~sv~~  154 (156)
                      ++.|+++||++|+.+.+.+.+.      ++.+..+|++.+++....+    ++.++|+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~   53 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPV   53 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCE
Confidence            5779999999999998888762      3677788888766555444    5666664

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.78  E-value=0.00012  Score=52.98  Aligned_cols=68  Identities=12%  Similarity=0.037  Sum_probs=54.8

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEeC--CCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCccceec
Q 031608           84 DHLDQILLRAQELSQPILIDWMA--SWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~A--~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ++++..+.    .+...++.|-.  .-++.+-...-++++++++|++ ++.|++||+|++++++.+|||.++|+.
T Consensus        25 ~~~~~~~~----~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTL   95 (132)
T PRK11509         25 SRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPAT   95 (132)
T ss_pred             ccHHHHHh----CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEE
Confidence            56777774    34444554443  4578899999999999999984 599999999999999999999999975

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.70  E-value=0.0001  Score=47.86  Aligned_cols=50  Identities=20%  Similarity=0.233  Sum_probs=37.5

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH-----HHHHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-----KDLVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~-----~l~~~~~i~sv~~  154 (156)
                      ++.|+++|||+|+...+.|+++..    .+.++.+|.+++.     .+.+..|..++|+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~   56 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPN   56 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCe
Confidence            477999999999999999999755    3567788877652     2334457777764

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.66  E-value=0.0002  Score=46.52  Aligned_cols=50  Identities=24%  Similarity=0.343  Sum_probs=40.1

Q ss_pred             EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus       102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      |.+++++|+.|..+...+++++..++  +.+--+|..+.+++ .+|||.++|.
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPa   52 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPA   52 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSE
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCE
Confidence            34468889999999999999999884  66766777666676 9999999985

...

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.60  E-value=0.00032  Score=49.59  Aligned_cols=68  Identities=15%  Similarity=0.101  Sum_probs=54.2

Q ss_pred             hHHHHHHHhhcCCCcEEEEEeCC----CChhHHhhh--HHHHHHHHHhcCCeEEEEEECCC--CHHHHHHhCCccceec
Q 031608           85 HLDQILLRAQELSQPILIDWMAS----WCRKCIYLK--PKLEKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNISVSIQ  155 (156)
Q Consensus        85 ~~~~~l~~a~~~~k~vlV~F~A~----WC~~Ck~~~--p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~~~i~sv~~~  155 (156)
                      .+++.+..|+.++|+++|+++++    ||..|+...  |.+.+..   +.++.+.+.|++.  ..+++..+++.+.|+-
T Consensus         5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l---n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~   80 (116)
T cd02991           5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI---NTRMLFWACSVAKPEGYRVSQALRERTYPFL   80 (116)
T ss_pred             cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH---HcCEEEEEEecCChHHHHHHHHhCCCCCCEE
Confidence            57788888888999999999999    999997763  5555544   3468999999975  4578889999998873

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.59  E-value=0.00017  Score=48.05  Aligned_cols=53  Identities=25%  Similarity=0.343  Sum_probs=39.6

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH----HHHHHhCC--cccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----KDLVKRGN--ISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~----~l~~~~~i--~sv~~  154 (156)
                      ++.|+.+|||.|++.+..|+++..++. ++.+..+|++...    ++.+..|-  .+||+
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~   60 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQ   60 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCe
Confidence            577999999999999999999876654 3778888887532    45555553  67764

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.53  E-value=0.00037  Score=42.94  Aligned_cols=48  Identities=19%  Similarity=0.262  Sum_probs=36.0

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHH----hCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK----RGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~----~~i~sv~~  154 (156)
                      ++.|+.+||++|++.+..|++.      ++.+-.+|+++.++..+.    .|..++|+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~   52 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQ   52 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCE
Confidence            4679999999999999988442      378888888876544332    38888775

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.52  E-value=0.00032  Score=43.59  Aligned_cols=48  Identities=23%  Similarity=0.256  Sum_probs=35.3

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHH----HhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV----KRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~----~~~i~sv~~  154 (156)
                      ++.|+++||++|+...+.|.+..      +.+..+|++++++...    ..+..++|+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~   53 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQ   53 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCE
Confidence            46789999999999999998763      6677888887664433    345556653

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.51  E-value=0.00035  Score=45.69  Aligned_cols=52  Identities=13%  Similarity=0.167  Sum_probs=37.5

Q ss_pred             CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC---HHHHHHhCCcccee
Q 031608           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISVSI  154 (156)
Q Consensus        97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~---~~l~~~~~i~sv~~  154 (156)
                      .+.-++.|+.+||+.|++.+..|++.      ++.+..+|+++.   .++....|..++|+
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~   60 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQ   60 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCe
Confidence            44456779999999999999999753      366777888665   34444467777775

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=97.51  E-value=0.00068  Score=47.21  Aligned_cols=72  Identities=22%  Similarity=0.333  Sum_probs=50.7

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC----CHHHHHHhCCcc
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK----VSKDLVKRGNIS  151 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~----~~~l~~~~~i~s  151 (156)
                      ..|++.+++++++..  ...++++|.=.++.||-.......|++.....++.+.++.+|+-+    ...+++++||.=
T Consensus         2 ~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H   77 (105)
T PF11009_consen    2 KPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH   77 (105)
T ss_dssp             -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT---
T ss_pred             CccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc
Confidence            467889999999975  458898888899999999999999999998887669999999976    457788999863

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.46  E-value=0.00063  Score=54.48  Aligned_cols=57  Identities=12%  Similarity=0.086  Sum_probs=48.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC-----------HHHHHHhCCcccee
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-----------SKDLVKRGNISVSI  154 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~-----------~~l~~~~~i~sv~~  154 (156)
                      .++.-|+.||.+-|+.|.++.|+++.++++|+  +.++.|++|-.           ...++++|+..+|.
T Consensus       149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pa  216 (256)
T TIGR02739       149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPA  216 (256)
T ss_pred             HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCce
Confidence            46789999999999999999999999999986  77888877753           55788999987663

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.45  E-value=0.0014  Score=47.26  Aligned_cols=70  Identities=21%  Similarity=0.322  Sum_probs=58.9

Q ss_pred             ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031608           79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus        79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      .+.+.-+.++++..  ...+.++|-|.-+|=+.|-++...+.+.+++..+-..++-||+++.|+..+-|.+.
T Consensus         4 ~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~   73 (133)
T PF02966_consen    4 HLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY   73 (133)
T ss_dssp             EE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-
T ss_pred             ccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC
Confidence            45667788888875  68999999999999999999999999999999876899999999999988888776

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.34  E-value=0.00062  Score=43.57  Aligned_cols=47  Identities=17%  Similarity=0.304  Sum_probs=36.9

Q ss_pred             EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHh---CCcccee
Q 031608          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR---GNISVSI  154 (156)
Q Consensus       102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~---~i~sv~~  154 (156)
                      ..|+.++|+.|++.+..|++.      ++.+-.+|++++++....+   |..+||+
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~   51 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPV   51 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCE
Confidence            468899999999999998752      4788889998877666555   7777775

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=97.34  E-value=0.0006  Score=48.79  Aligned_cols=41  Identities=22%  Similarity=0.438  Sum_probs=34.0

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      +++++|+.|+.++||+|+.+.|.++++..+++ ++.++..+.
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~   44 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKEF   44 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEEeC
Confidence            47889999999999999999999999887776 455555554

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0011  Score=49.43  Aligned_cols=81  Identities=19%  Similarity=0.251  Sum_probs=60.8

Q ss_pred             cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD  136 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd  136 (156)
                      .+.++..+|+|.+|.... ..|... ++         .|++||+.|| ..|+|-|-.++-.|.+...++.. ++.+++|.
T Consensus         3 ~l~~G~~aPdF~Lp~~~g-~~v~Ls-d~---------~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS   71 (157)
T COG1225           3 MLKVGDKAPDFELPDQDG-ETVSLS-DL---------RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGIS   71 (157)
T ss_pred             cCCCCCcCCCeEeecCCC-CEEehH-Hh---------cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            356788899999997643 223322 33         5889999999 79999999999999999988875 68999999


Q ss_pred             CCC---CHHHHHHhCCc
Q 031608          137 VNK---VSKDLVKRGNI  150 (156)
Q Consensus       137 ~d~---~~~l~~~~~i~  150 (156)
                      .|.   ....+++++..
T Consensus        72 ~Ds~~~~~~F~~k~~L~   88 (157)
T COG1225          72 PDSPKSHKKFAEKHGLT   88 (157)
T ss_pred             CCCHHHHHHHHHHhCCC
Confidence            886   33445555544

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.23  E-value=0.0013  Score=57.93  Aligned_cols=58  Identities=17%  Similarity=0.250  Sum_probs=51.0

Q ss_pred             CCCcEEEEE-eCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           96 LSQPILIDW-MASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        96 ~~k~vlV~F-~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      -++++-|.+ .+++|+.|......+++++.+.+ ++..--+|..+.++++.+|+|++||.
T Consensus       474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~  532 (555)
T TIGR03143       474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPA  532 (555)
T ss_pred             cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCE
Confidence            467765554 79999999999999999998876 59999999999999999999999985

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.23  E-value=0.00077  Score=43.66  Aligned_cols=48  Identities=17%  Similarity=0.227  Sum_probs=34.7

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHH----hCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK----RGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~----~~i~sv~~  154 (156)
                      ++.|+.+||+.|++....|++.      ++.+-.+|++.+++..++    .|..++|+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~   52 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQ   52 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCE
Confidence            3568899999999999999863      356677788776655443    36666664

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>KOG3414 consensus Component of the U4/U6

Probab=97.17  E-value=0.0024  Score=45.87  Aligned_cols=71  Identities=17%  Similarity=0.304  Sum_probs=60.1

Q ss_pred             cCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccc
Q 031608           80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISV  152 (156)
Q Consensus        80 i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv  152 (156)
                      +.+..+.++.+..  ...+.++|-|.-+|=|.|..+...+.+.++...+-+.++-||+++.++..+-|++...
T Consensus         8 L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p   78 (142)
T KOG3414|consen    8 LHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDP   78 (142)
T ss_pred             cccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCC
Confidence            4556677777764  5689999999999999999999999999999886578888999999999888877643

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.16  E-value=0.001  Score=51.05  Aligned_cols=75  Identities=16%  Similarity=0.159  Sum_probs=64.8

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ....+|.+..+|=+.+.    ....|++-||-+--..|+.+..+|+.||+.+-+ ..|++||+...|=++.+++|.-+|+
T Consensus        66 G~y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~  140 (211)
T KOG1672|consen   66 GEYEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPT  140 (211)
T ss_pred             ceEEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeee
Confidence            45677776666666663    578899999999999999999999999999985 8999999999999999999988876

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=97.15  E-value=0.0011  Score=48.87  Aligned_cols=78  Identities=18%  Similarity=0.244  Sum_probs=50.2

Q ss_pred             ccccCCCCCCCcc--ceEecCChhhHHHHHHHhhcCCCcEEE-EEeCCCChhHHhh-hHHHHHHHHHhcC-Ce-EEEEEE
Q 031608           63 EALWPDLSRPTSV--ELEPINDSDHLDQILLRAQELSQPILI-DWMASWCRKCIYL-KPKLEKLAAEFDT-KL-KFYYVD  136 (156)
Q Consensus        63 ~~~~~~~~~p~~~--~~~~i~~~~~~~~~l~~a~~~~k~vlV-~F~A~WC~~Ck~~-~p~l~~la~~~~~-~v-~~~~vd  136 (156)
                      +..+|+|.++...  ....+.    +.+.+     .|++++| .|.+.||+.|-.+ .+.|.+..+++.. ++ .++.|.
T Consensus         2 G~~aPdF~l~~~~~~~g~~v~----L~~~~-----~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS   72 (155)
T cd03013           2 GDKLPNVTLFEYVPGPPNPVN----LSELF-----KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVS   72 (155)
T ss_pred             CCcCCCeEeeeeccCCCceee----HHHHh-----CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEE
Confidence            4456777776532  122332    33322     3555554 4559999999999 9999999988863 56 588888


Q ss_pred             CCC---CHHHHHHhCC
Q 031608          137 VNK---VSKDLVKRGN  149 (156)
Q Consensus       137 ~d~---~~~l~~~~~i  149 (156)
                      .|.   ..+.++++++
T Consensus        73 ~D~~~~~~~~~~~~~~   88 (155)
T cd03013          73 VNDPFVMKAWGKALGA   88 (155)
T ss_pred             CCCHHHHHHHHHhhCC
Confidence            876   3345556665

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.14  E-value=0.0023  Score=51.02  Aligned_cols=56  Identities=11%  Similarity=-0.020  Sum_probs=45.1

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC-----------CHHHHHHhCCccce
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-----------VSKDLVKRGNISVS  153 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~-----------~~~l~~~~~i~sv~  153 (156)
                      .++.-|+.||.+-|+.|.++.|+++.++++|+  +.++.|++|-           +...+.++||..+|
T Consensus       142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~P  208 (248)
T PRK13703        142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFP  208 (248)
T ss_pred             HhcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccc
Confidence            36688999999999999999999999999987  6777776653           23456778887665

>PRK10329 glutaredoxin-like protein; Provisional

Probab=97.05  E-value=0.0027  Score=41.91  Aligned_cols=48  Identities=17%  Similarity=0.338  Sum_probs=36.4

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHH---HhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV---KRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~---~~~i~sv~~  154 (156)
                      ++.|+.+||+.|++.+..|++.      ++.|-.+|++++++.+.   ..|..++|+
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~~------gI~~~~idi~~~~~~~~~~~~~g~~~vPv   53 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMESR------GFDFEMINVDRVPEAAETLRAQGFRQLPV   53 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCCCcCE
Confidence            5678999999999999888552      48888999988776443   346667765

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=97.03  E-value=0.00092  Score=53.81  Aligned_cols=77  Identities=14%  Similarity=0.196  Sum_probs=55.0

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..+.+|.+.++|-+.+... ..+..|||.||-+-++.|..+...|..||.+|+. +.|++|.....+ +..+|.+..+|+
T Consensus       125 G~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPt  201 (265)
T PF02114_consen  125 GEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPT  201 (265)
T ss_dssp             -SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred             ceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCE
Confidence            4567887767777776421 2355799999999999999999999999999995 999999987765 566777766664

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=97.01  E-value=0.0015  Score=44.75  Aligned_cols=48  Identities=17%  Similarity=0.125  Sum_probs=31.5

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH---H----HHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---D----LVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~---l----~~~~~i~sv~~  154 (156)
                      ++.|..+|||.|++.+..|.+..      +.+-.+|+++.++   +    .+..|..++|+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~   64 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPA   64 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCe
Confidence            55699999999999999887652      4455666665432   2    22235667664

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.01  E-value=0.0034  Score=39.95  Aligned_cols=48  Identities=19%  Similarity=0.250  Sum_probs=34.8

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHH----hCCc-ccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK----RGNI-SVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~----~~i~-sv~~  154 (156)
                      ++.|+.+||+.|.+.+..|++.      ++.+-.+|++.+++..++    .|.. ++|+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~   54 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQ   54 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCE
Confidence            4678999999999999888763      367778888876655443    4554 6653

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PHA03050 glutaredoxin; Provisional

Probab=96.99  E-value=0.002  Score=44.97  Aligned_cols=51  Identities=16%  Similarity=0.130  Sum_probs=33.2

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC---CH----HHHHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VS----KDLVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~---~~----~l~~~~~i~sv~~  154 (156)
                      ++.|..+|||.|++.+..|++..-+++   .+-.+|+++   ..    ++.+.-|..+||+
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~   72 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPR   72 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCE
Confidence            566999999999999999988744332   344455543   32    2334446667664

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.95  E-value=0.0033  Score=54.73  Aligned_cols=57  Identities=12%  Similarity=0.195  Sum_probs=50.9

Q ss_pred             CCc-EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           97 SQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        97 ~k~-vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      +++ -+--|.++.||.|......+++++...+ +|.+-.+|..++++++.+|++.+||.
T Consensus       115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~  172 (517)
T PRK15317        115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPT  172 (517)
T ss_pred             CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCE
Confidence            444 4778999999999999999999998766 69999999999999999999999985

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.78  E-value=0.0051  Score=39.25  Aligned_cols=48  Identities=13%  Similarity=0.218  Sum_probs=34.9

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----DLVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~----l~~~~~i~sv~~  154 (156)
                      ++.|+.+||+.|++....|++.      ++.+-.+|+++.++    +.+..+..++|+
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~   54 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQ   54 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCE
Confidence            4568999999999999888863      36777888887664    444445555554

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.73  E-value=0.0031  Score=46.52  Aligned_cols=42  Identities=26%  Similarity=0.521  Sum_probs=36.6

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      ++++.|+.|+...||+|+.+.+.+.++.+++++++.+..+.+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~   55 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV   55 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence            478999999999999999999999999998877777766554

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=96.73  E-value=0.0084  Score=43.38  Aligned_cols=46  Identities=22%  Similarity=0.377  Sum_probs=38.9

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHh--cCCeEEEEEECCCCH
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVS  141 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~--~~~v~~~~vd~d~~~  141 (156)
                      +.+++|+.|+..-||+|+++.+.+.++.+++  ++++.|+..++-...
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~   58 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDK   58 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSH
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccc
Confidence            4788999999999999999999999999998  667999999885433

...

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=96.72  E-value=0.0057  Score=38.86  Aligned_cols=48  Identities=15%  Similarity=0.182  Sum_probs=34.3

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH---HHHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~---l~~~~~i~sv~~  154 (156)
                      ++.|..+||+.|.+.+..|++.      ++.+..+|++++.+   +....|..++|+
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~   53 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQ   53 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCe
Confidence            5679999999999998888752      36677778876542   223347777775

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=96.69  E-value=0.0094  Score=40.63  Aligned_cols=58  Identities=12%  Similarity=0.145  Sum_probs=37.1

Q ss_pred             hHHHHHHHhhcCCCcEEEEEe----CCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHH----HhCCccce
Q 031608           85 HLDQILLRAQELSQPILIDWM----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV----KRGNISVS  153 (156)
Q Consensus        85 ~~~~~l~~a~~~~k~vlV~F~----A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~----~~~i~sv~  153 (156)
                      .+++++    + ..+|+|.-.    ++|||.|++....|.+.      ++.+..+|+++++++..    ..|..++|
T Consensus         4 ~v~~~i----~-~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP   69 (97)
T TIGR00365         4 RIKEQI----K-ENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIP   69 (97)
T ss_pred             HHHHHh----c-cCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCC
Confidence            455566    2 345555433    38999999999888774      36677889877665433    23444554

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.68  E-value=0.0042  Score=40.81  Aligned_cols=51  Identities=27%  Similarity=0.399  Sum_probs=43.1

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      |+.|+.+.|+-|......++++....+  +.+-.||+++++++..+|+. .||+
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPV   52 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPV   52 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSE
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCE
Confidence            678999999999999999999766544  89999999999999999995 5554

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0061  Score=54.52  Aligned_cols=62  Identities=18%  Similarity=0.153  Sum_probs=49.2

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCCCHHHHHHhC
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKDLVKRG  148 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l~~~~~  148 (156)
                      .+.|.+.-    ..+|||++.+..+||-.|..|...=   .++|+.++.+++-++||-++-|++-+-|.
T Consensus        33 ~eAf~~A~----~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym   97 (667)
T COG1331          33 EEAFAKAK----EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYM   97 (667)
T ss_pred             HHHHHHHH----HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHH
Confidence            44565554    6799999999999999999997553   56677777679999999999888766553

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.013  Score=43.76  Aligned_cols=62  Identities=16%  Similarity=0.264  Sum_probs=50.1

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCC----------------CHHHHHHhCCccceec
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNK----------------VSKDLVKRGNISVSIQ  155 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~----------------~~~l~~~~~i~sv~~~  155 (156)
                      .+++..++.|-.+-|.-|-+++..+   +++.+.+.+++.++.+|+..                ..+++++|+++|-|..
T Consensus        40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf  119 (182)
T COG2143          40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF  119 (182)
T ss_pred             ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence            5799999999999999999998776   45555566668888888743                2489999999998875


Q ss_pred             C
Q 031608          156 I  156 (156)
Q Consensus       156 ~  156 (156)
                      +
T Consensus       120 v  120 (182)
T COG2143         120 V  120 (182)
T ss_pred             E
Confidence            3

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=96.31  E-value=0.0062  Score=46.86  Aligned_cols=43  Identities=12%  Similarity=0.402  Sum_probs=36.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d  138 (156)
                      .+++.||.|+.--||+|+.+.|.+   +.+.+.+++++.++.+.+.
T Consensus        36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~   81 (207)
T PRK10954         36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVE   81 (207)
T ss_pred             CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEeccc
Confidence            367889999999999999999976   8888888877777777653

>PRK10638 glutaredoxin 3; Provisional

Probab=96.30  E-value=0.014  Score=38.20  Aligned_cols=48  Identities=15%  Similarity=0.248  Sum_probs=34.2

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD----LVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~~~i~sv~~  154 (156)
                      ++.|..+||+.|++..-.|++.      ++.+..+|++++++.    .+..|..++|+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~   55 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQ   55 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCE
Confidence            5568899999999999888864      356667788766543    33446666664

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=96.30  E-value=0.032  Score=41.08  Aligned_cols=72  Identities=19%  Similarity=0.359  Sum_probs=59.2

Q ss_pred             eEecCChhhHHHHHHHhhcCCCc-EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc--cce
Q 031608           77 LEPINDSDHLDQILLRAQELSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI--SVS  153 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~-vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~--sv~  153 (156)
                      +.+++ .+++..+.    ..+++ +++.|...-......+...++++++++.+++.|+.+|++..++++..+|+.  .+|
T Consensus        79 v~~~t-~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P  153 (184)
T PF13848_consen   79 VPELT-PENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLP  153 (184)
T ss_dssp             CEEES-TTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSS
T ss_pred             ccccc-hhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCC
Confidence            34554 55888888    45655 777777777888899999999999999988999999999999999999997  444

...

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.012  Score=38.72  Aligned_cols=48  Identities=17%  Similarity=0.277  Sum_probs=34.4

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH-----HHHHHh-CCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-----KDLVKR-GNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~-----~l~~~~-~i~sv~~  154 (156)
                      ++.|.-+|||.|++.+..|.+.      ++.+..+|+++.+     +.+++- |.++||+
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~   56 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQ   56 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCE
Confidence            5668999999999999888832      4677777776544     334444 6778775

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=96.27  E-value=0.014  Score=39.04  Aligned_cols=52  Identities=12%  Similarity=0.095  Sum_probs=33.7

Q ss_pred             CCcEEEEEeC----CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHH----hCCcccee
Q 031608           97 SQPILIDWMA----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK----RGNISVSI  154 (156)
Q Consensus        97 ~k~vlV~F~A----~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~----~~i~sv~~  154 (156)
                      +.+|+|.-..    +||+.|++.+..|++..      +.+..+|+++++++.+.    .|..++|+
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~   66 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQ   66 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCE
Confidence            4555553322    79999999999887752      56777787766654332    35556553

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.26  E-value=0.01  Score=38.60  Aligned_cols=37  Identities=24%  Similarity=0.565  Sum_probs=30.4

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      ++.|+.+.||+|..+.+.++++.....+++.+....+
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~   37 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF   37 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence            4679999999999999999999866666677766655

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.11  E-value=0.023  Score=49.46  Aligned_cols=57  Identities=12%  Similarity=0.172  Sum_probs=50.5

Q ss_pred             CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      +..-+--|.++-||.|......+.+++...+ +|..-.+|...+++++.+|++.+||.
T Consensus       117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~  173 (515)
T TIGR03140       117 GPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPA  173 (515)
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCE
Confidence            3445778999999999999999999998876 58888899999999999999999985

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=95.67  E-value=0.092  Score=34.79  Aligned_cols=63  Identities=11%  Similarity=0.122  Sum_probs=47.7

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      ..|.+.+++++++    ..+++++|-|+.+++.   .+...|.++|..+.+.+.|+.++   +++++.++++.
T Consensus         2 ~~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~   64 (97)
T cd02981           2 KELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK   64 (97)
T ss_pred             eecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC
Confidence            3567777888877    4689999999999998   57788999999987667887665   45566555543

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PRK10824 glutaredoxin-4; Provisional

Probab=95.38  E-value=0.061  Score=38.02  Aligned_cols=49  Identities=20%  Similarity=0.352  Sum_probs=31.6

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEeC-----CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHH
Q 031608           84 DHLDQILLRAQELSQPILIDWMA-----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDL  144 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~A-----~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~  144 (156)
                      +..++++.     ..+|+| |..     ||||.|++....|.++.      +.+..+|+++++++.
T Consensus         6 ~~v~~~I~-----~~~Vvv-f~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~   59 (115)
T PRK10824          6 EKIQRQIA-----ENPILL-YMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIR   59 (115)
T ss_pred             HHHHHHHh-----cCCEEE-EECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHH
Confidence            34556662     455554 444     59999999999888763      445556776665543

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=95.16  E-value=0.046  Score=46.59  Aligned_cols=36  Identities=14%  Similarity=0.204  Sum_probs=29.4

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK  142 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~  142 (156)
                      |+.|..+|||+|++.+..|.+.      ++.+-.+|+++.+.
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~   39 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVK   39 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChh
Confidence            5679999999999999888774      37788888887663

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=94.99  E-value=0.23  Score=34.47  Aligned_cols=68  Identities=18%  Similarity=0.125  Sum_probs=51.9

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHhCCc
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNI  150 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~~~i~  150 (156)
                      ..|.+..+|.+++.    ....|+|.|..+-= .--.....+.++|+...+.-.++.|||.+  ...+|.++.+.
T Consensus         4 e~i~d~KdfKKLLR----Tr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~   73 (112)
T cd03067           4 EDISDHKDFKKLLR----TRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVD   73 (112)
T ss_pred             ccccchHHHHHHHh----hcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccC
Confidence            45777889999994    56778887776543 33344557888888888767899999976  77899999887

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=94.97  E-value=0.028  Score=44.48  Aligned_cols=45  Identities=13%  Similarity=0.359  Sum_probs=39.4

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      ..++|+|++|.+--|||=..-.+.|++++++|.+.+.|+-|-+.+
T Consensus       100 ~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~E  144 (237)
T PF00837_consen  100 KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEE  144 (237)
T ss_pred             cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhh
Confidence            579999999999999999999999999999998766677776643

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=94.82  E-value=0.064  Score=40.74  Aligned_cols=26  Identities=15%  Similarity=0.298  Sum_probs=24.1

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHH
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEK  121 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~  121 (156)
                      +++..++.|+.+.||+|+++.+.+.+
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP  101 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh
Confidence            47899999999999999999999987

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=94.80  E-value=0.33  Score=34.79  Aligned_cols=72  Identities=15%  Similarity=0.217  Sum_probs=53.8

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCC--CCh-hH-HhhhHHHHHHHHHhcCC-eEEEEEECCCCHHHHHHhCCc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMAS--WCR-KC-IYLKPKLEKLAAEFDTK-LKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~--WC~-~C-k~~~p~l~~la~~~~~~-v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      +++++++.+.+++.-    .+++..+|-|.-.  -|. .+ ......+.++|+.|.++ +.|+.+|.++...+++.||+.
T Consensus         3 ~~~~l~~~~~~~~~C----~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~   78 (130)
T cd02983           3 EIIELTSEDVFEETC----EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIG   78 (130)
T ss_pred             ceEEecCHHHHHhhc----cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCC
Confidence            567888777776665    2356666766432  122 23 35578899999999988 999999999999999999986


Q ss_pred             c
Q 031608          151 S  151 (156)
Q Consensus       151 s  151 (156)
                      .
T Consensus        79 ~   79 (130)
T cd02983          79 G   79 (130)
T ss_pred             c
Confidence            4

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=94.38  E-value=0.19  Score=34.90  Aligned_cols=47  Identities=17%  Similarity=0.305  Sum_probs=33.1

Q ss_pred             hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH
Q 031608           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS  141 (156)
Q Consensus        85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~  141 (156)
                      ..++++.     ..+ +|.|.-+||+.|++++..|.+    ++.+..++.+|-+.+.
T Consensus         6 ~v~~~i~-----~~~-VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g   52 (104)
T KOG1752|consen    6 KVRKMIS-----ENP-VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDG   52 (104)
T ss_pred             HHHHHhh-----cCC-EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCc
Confidence            4556662     344 345999999999998888877    4445678888876543

>PTZ00062 glutaredoxin; Provisional

Probab=94.31  E-value=0.16  Score=39.36  Aligned_cols=50  Identities=12%  Similarity=0.206  Sum_probs=33.2

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEe----CCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHH
Q 031608           84 DHLDQILLRAQELSQPILIDWM----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDL  144 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~----A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~  144 (156)
                      +-+++++    + ..+|+|.--    +||||.|++....|.+.      ++.+..+|+++.+++.
T Consensus       104 ~~v~~li----~-~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~  157 (204)
T PTZ00062        104 EKIERLI----R-NHKILLFMKGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLR  157 (204)
T ss_pred             HHHHHHH----h-cCCEEEEEccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHH
Confidence            3455555    2 455544332    37999999998888864      3677788887766543

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=94.02  E-value=0.39  Score=33.37  Aligned_cols=63  Identities=19%  Similarity=0.193  Sum_probs=48.5

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHH---hcCCeEEEEEECCCCHHHHHHhCCcc
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE---FDTKLKFYYVDVNKVSKDLVKRGNIS  151 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~---~~~~v~~~~vd~d~~~~l~~~~~i~s  151 (156)
                      .++...+.    ..+.+..+.|+  -=..=..+.+.+.+++++   +.+++.|+.+|.++....++-+|+..
T Consensus         6 ~e~~~~~~----~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~   71 (111)
T cd03072           6 FENAEELT----EEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTP   71 (111)
T ss_pred             cccHHHHh----cCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCH
Confidence            34555666    45667666677  222346788999999999   98889999999999888899999886

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=93.92  E-value=0.29  Score=43.10  Aligned_cols=70  Identities=16%  Similarity=0.078  Sum_probs=54.7

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+++++.+..  -.+...|+.|+.+-|..|..+...++++++ +.+++.+...|..++.+++++|++..+|..
T Consensus       354 ~~~l~~~~~~--l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~  423 (555)
T TIGR03143       354 RQQLVGIFGR--LENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTV  423 (555)
T ss_pred             HHHHHHHHHh--cCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEE
Confidence            3456666653  234446778888899999999999999985 556788988999889999999999877653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.74  E-value=0.29  Score=40.32  Aligned_cols=77  Identities=17%  Similarity=0.308  Sum_probs=61.6

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeC----CCChhHHhhhHHHHHHHHHhc------C--CeEEEEEECCCCHHH
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMA----SWCRKCIYLKPKLEKLAAEFD------T--KLKFYYVDVNKVSKD  143 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A----~WC~~Ck~~~p~l~~la~~~~------~--~v~~~~vd~d~~~~l  143 (156)
                      .+..++ .+.|.+++. +.-.+-.++|.|.|    .-|.-|+.+...+.-++..+.      +  ++-|..||.++.+++
T Consensus        41 ~VI~~n-~d~~~~~v~-~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~  118 (331)
T KOG2603|consen   41 GVIRMN-DDKFSKFVR-PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV  118 (331)
T ss_pred             CeEEec-Ccchhhhcc-CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence            466666 458888886 22345668888987    469999999999999987652      2  589999999999999


Q ss_pred             HHHhCCcccee
Q 031608          144 LVKRGNISVSI  154 (156)
Q Consensus       144 ~~~~~i~sv~~  154 (156)
                      .+.++..++|.
T Consensus       119 Fq~l~ln~~P~  129 (331)
T KOG2603|consen  119 FQQLNLNNVPH  129 (331)
T ss_pred             HHHhcccCCCe
Confidence            99999998875

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=93.54  E-value=0.35  Score=37.60  Aligned_cols=62  Identities=19%  Similarity=0.301  Sum_probs=51.5

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      .++.+|+..+...++...  ..|-+|+|..|...-+.|+-+...|+.++.+|+. +.|+++-.+.
T Consensus        91 G~V~~ISg~dyv~EVT~A--s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~  152 (240)
T KOG3170|consen   91 GEVFPISGPDYVKEVTKA--SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATT  152 (240)
T ss_pred             cceeeccchHHHHHHHhc--cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccccc
Confidence            457778877666666654  5689999999999999999999999999999995 8898886543

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=93.03  E-value=0.44  Score=33.21  Aligned_cols=42  Identities=26%  Similarity=0.347  Sum_probs=36.4

Q ss_pred             hhHHhhhHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHhCCcc
Q 031608          110 RKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNIS  151 (156)
Q Consensus       110 ~~Ck~~~p~l~~la~~~~-~~v~~~~vd~d~~~~l~~~~~i~s  151 (156)
                      ..=..+...+.++|+.++ +++.|+.+|.++....++.+|+..
T Consensus        31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~   73 (111)
T cd03073          31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDF   73 (111)
T ss_pred             hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCc
Confidence            444678899999999999 699999999999888888899874

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=92.91  E-value=0.26  Score=38.78  Aligned_cols=40  Identities=13%  Similarity=0.275  Sum_probs=30.9

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      .+++.+++.|+-+-||.|+++++.++++.+.   ++.+..+..
T Consensus       105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~  144 (232)
T PRK10877        105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAF  144 (232)
T ss_pred             CCCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEec
Confidence            3578899999999999999999999887541   355555433

>PHA03075 glutaredoxin-like protein; Provisional

Probab=92.26  E-value=0.27  Score=34.85  Aligned_cols=30  Identities=27%  Similarity=0.509  Sum_probs=26.6

Q ss_pred             CcEEEEEeCCCChhHHhhhHHHHHHHHHhc
Q 031608           98 QPILIDWMASWCRKCIYLKPKLEKLAAEFD  127 (156)
Q Consensus        98 k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~  127 (156)
                      |.++|.|.-|.|+-|......+.++..+|+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~   31 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEYD   31 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence            568999999999999999999988887764

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=91.69  E-value=0.77  Score=34.35  Aligned_cols=52  Identities=17%  Similarity=0.330  Sum_probs=38.4

Q ss_pred             CCCcEEEEEeCCCC-hhHHhhhHHHHHHHHHhc---CCeEEEEEECCC---CHHHHHHh
Q 031608           96 LSQPILIDWMASWC-RKCIYLKPKLEKLAAEFD---TKLKFYYVDVNK---VSKDLVKR  147 (156)
Q Consensus        96 ~~k~vlV~F~A~WC-~~Ck~~~p~l~~la~~~~---~~v~~~~vd~d~---~~~l~~~~  147 (156)
                      .||++||.|.-+-| ..|-.....+.++.+.++   .++.++.|.+|.   .++.+++|
T Consensus        51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y  109 (174)
T PF02630_consen   51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY  109 (174)
T ss_dssp             TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred             CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence            69999999999999 579988888877776654   257777777763   56666665

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=91.60  E-value=0.23  Score=33.87  Aligned_cols=32  Identities=16%  Similarity=0.183  Sum_probs=24.2

Q ss_pred             EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus       102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      ..|+.++|+.|++....|++.      ++.+-.+|+.+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~   33 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLK   33 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHHc------CCCcEEEeecc
Confidence            468899999999998777763      35666677654

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=91.53  E-value=0.46  Score=37.81  Aligned_cols=39  Identities=10%  Similarity=0.122  Sum_probs=30.5

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEE
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD  136 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd  136 (156)
                      +++.+|+.|+-+-||.|+++.+.+.++.+.  ++|.+..+-
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip  154 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHIL  154 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEe
Confidence            567889999999999999999998887653  235555554

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=89.21  E-value=1  Score=31.34  Aligned_cols=34  Identities=15%  Similarity=0.344  Sum_probs=26.0

Q ss_pred             EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH
Q 031608          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS  141 (156)
Q Consensus       102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~  141 (156)
                      ..|+.++|+.|++....|++-      ++.+-.+|+.+.+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~   35 (117)
T TIGR01617         2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG   35 (117)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence            357899999999998887762      3677778876644

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=89.20  E-value=1.1  Score=32.89  Aligned_cols=38  Identities=24%  Similarity=0.263  Sum_probs=28.7

Q ss_pred             EEEEeCC------CChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHH
Q 031608          101 LIDWMAS------WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDL  144 (156)
Q Consensus       101 lV~F~A~------WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~  144 (156)
                      +|.|+++      +|+.|++.+..|+++      +|.+-.+|++.+++..
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~   45 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFR   45 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHH
Confidence            3456777      999999999888764      3778889997765443

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=88.98  E-value=0.96  Score=32.39  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=25.6

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS  141 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~  141 (156)
                      +..|+.+||+.|++....|++-      ++.+-.+|+.+.+
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~   36 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP   36 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence            4568899999999988766553      3667777776543

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=88.06  E-value=0.83  Score=31.63  Aligned_cols=33  Identities=15%  Similarity=0.231  Sum_probs=24.8

Q ss_pred             EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031608          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV  140 (156)
Q Consensus       102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~  140 (156)
                      ..|+.++|+.|++....|++-      ++.|-.+|+.++
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~   34 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEE   34 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHHc------CCceEEecccCC
Confidence            458899999999998777763      366777777543

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=87.94  E-value=0.84  Score=35.14  Aligned_cols=70  Identities=17%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             chhccccCCCCCCCc-cc--eEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEE
Q 031608           60 VRVEALWPDLSRPTS-VE--LEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYY  134 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~-~~--~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~  134 (156)
                      .+++..+|+|..++. .+  ..+|+..+.          .+|++++.|| ++.-+-|=-+...|.+.++++.. ++.+++
T Consensus         3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~----------~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVig   72 (194)
T COG0450           3 SLIGKKAPDFTANAVLGGEIFEEITLSDY----------YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIG   72 (194)
T ss_pred             cccCCcCCCcEEEEEecCceeeEEechhh----------cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEE
Confidence            355677777776654 11  234543322          2688888888 78888888899999998888864 699999


Q ss_pred             EECCC
Q 031608          135 VDVNK  139 (156)
Q Consensus       135 vd~d~  139 (156)
                      +.+|.
T Consensus        73 vS~Ds   77 (194)
T COG0450          73 VSTDS   77 (194)
T ss_pred             EecCc
Confidence            99986

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=87.76  E-value=0.77  Score=31.64  Aligned_cols=32  Identities=16%  Similarity=0.157  Sum_probs=24.0

Q ss_pred             EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus       102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      ..|+.+||+.|++....|++-      ++.+-.+|+.+
T Consensus         2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~   33 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRK   33 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc------CCCeEEEeccc
Confidence            468899999999988777663      35666677654

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=86.92  E-value=1.5  Score=32.83  Aligned_cols=34  Identities=26%  Similarity=0.652  Sum_probs=26.0

Q ss_pred             EEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEE
Q 031608          103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD  136 (156)
Q Consensus       103 ~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd  136 (156)
                      .|.-|+|+.|-...|.+.++..+++..+.+-.|=
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~   35 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIP   35 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEE
Confidence            4889999999999999999999998766555443

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=85.07  E-value=1.4  Score=30.67  Aligned_cols=72  Identities=14%  Similarity=0.102  Sum_probs=49.5

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCC---ChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccce
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASW---CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVS  153 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~W---C~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~  153 (156)
                      ...++ .++++.++.    .+...++ |++.-   ++.+....=++-++.+.+++.+..+.++-....++..+||+.+.|
T Consensus        11 ~~~vd-~~~ld~~l~----~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~P   84 (107)
T PF07449_consen   11 WPRVD-ADTLDAFLA----APGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWP   84 (107)
T ss_dssp             EEEE--CCCHHHHHH----CCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSS
T ss_pred             Ceeec-hhhHHHHHh----CCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCC
Confidence            33444 557888885    3444444 55544   455666667888998899887888888877789999999998776


Q ss_pred             e
Q 031608          154 I  154 (156)
Q Consensus       154 ~  154 (156)
                      .
T Consensus        85 a   85 (107)
T PF07449_consen   85 A   85 (107)
T ss_dssp             E
T ss_pred             e
Confidence            4

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=84.58  E-value=3.3  Score=31.99  Aligned_cols=54  Identities=20%  Similarity=0.297  Sum_probs=40.8

Q ss_pred             CCCcEEEEEeCCCCh-hHHhhhHHHHHHHHHhc----CC--eEEEEEECC-CCHHHHHHhCC
Q 031608           96 LSQPILIDWMASWCR-KCIYLKPKLEKLAAEFD----TK--LKFYYVDVN-KVSKDLVKRGN  149 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~-~Ck~~~p~l~~la~~~~----~~--v~~~~vd~d-~~~~l~~~~~i  149 (156)
                      .|++++|.|.=+.|| -|-.+...+..+.++..    .+  +.++.||-+ +.++.+++|+.
T Consensus        66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~  127 (207)
T COG1999          66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE  127 (207)
T ss_pred             CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence            599999999988886 69998888888877765    23  455555543 46888888865

>PRK12559 transcriptional regulator Spx; Provisional

Probab=82.63  E-value=2.5  Score=30.31  Aligned_cols=33  Identities=15%  Similarity=0.327  Sum_probs=23.8

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      +..|+.++|+.|++....|++-      ++.+-.+|+.+
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~   34 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVS   34 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeC
Confidence            4568899999999988666653      35566666654

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=82.52  E-value=3.5  Score=28.60  Aligned_cols=33  Identities=21%  Similarity=0.255  Sum_probs=24.2

Q ss_pred             EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031608          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV  140 (156)
Q Consensus       102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~  140 (156)
                      ..|+.++|+.|++....|++.      ++.+-.+|+.++
T Consensus         3 ~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~   35 (115)
T cd03032           3 KLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ   35 (115)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence            457889999999988887763      356666776543

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=82.43  E-value=2.7  Score=26.07  Aligned_cols=48  Identities=13%  Similarity=0.111  Sum_probs=29.7

Q ss_pred             EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC-CHHHHHHhCCccce
Q 031608          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-VSKDLVKRGNISVS  153 (156)
Q Consensus       102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~-~~~l~~~~~i~sv~  153 (156)
                      +.|+.+||+.|.+..-.+++..-    .+.++.+|... .++..+....-.||
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP   50 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVP   50 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCC
Confidence            34789999999998777766432    25566666543 34554444444444

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=80.67  E-value=18  Score=25.91  Aligned_cols=68  Identities=12%  Similarity=0.092  Sum_probs=47.0

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHH-HHhc--CCeEEEEEECC-----CCHHHHHHhC
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLA-AEFD--TKLKFYYVDVN-----KVSKDLVKRG  148 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la-~~~~--~~v~~~~vd~d-----~~~~l~~~~~  148 (156)
                      .+.+.+ -+|++++.    ..+.+||.|=...  |=-.-+-.|.+++ +...  +++-++.|-+.     +|.+++++|+
T Consensus         6 ~v~LD~-~tFdKvi~----kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~   78 (126)
T PF07912_consen    6 CVPLDE-LTFDKVIP----KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYK   78 (126)
T ss_dssp             SEEEST-THHHHHGG----GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT
T ss_pred             eeeccc-eehhheec----cCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhC
Confidence            345554 48999994    5899999996554  4455567778888 4432  36888888774     3899999999


Q ss_pred             Ccc
Q 031608          149 NIS  151 (156)
Q Consensus       149 i~s  151 (156)
                      +..
T Consensus        79 i~k   81 (126)
T PF07912_consen   79 IDK   81 (126)
T ss_dssp             -SC
T ss_pred             CCc
Confidence            953

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=80.56  E-value=4.5  Score=29.66  Aligned_cols=45  Identities=9%  Similarity=0.121  Sum_probs=35.3

Q ss_pred             EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031608          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus       100 vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      -++.|+.|.||-|......++.      .++.+-.+..++...+-+++||.
T Consensus        27 ~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp   71 (149)
T COG3019          27 EMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIP   71 (149)
T ss_pred             eEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCC
Confidence            4677899999999998887772      14777777788888888888885

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=80.55  E-value=3.1  Score=33.00  Aligned_cols=44  Identities=18%  Similarity=0.471  Sum_probs=37.5

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc----CCeEEEEEECC
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD----TKLKFYYVDVN  138 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~----~~v~~~~vd~d  138 (156)
                      ..|+++||-+--.+|..|..-+..|+.|..++.    .+|.|+.||--
T Consensus        24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~   71 (238)
T PF04592_consen   24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ   71 (238)
T ss_pred             cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence            469999999999999999999999988886663    26999999964

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
3vfi_A	104	Crystal Structure Of A Metagenomic Thioredoxin Leng		2e-05
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		3e-05
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		5e-05
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		1e-04
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		2e-04
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		2e-04
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		3e-04
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		3e-04
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		5e-04
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		5e-04
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		5e-04
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		6e-04
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		6e-04
1ep7_A	112	Crystal Structure Of Wt Thioredoxin H From Chlamydo		8e-04
1faa_A	124	Crystal Structure Of Thioredoxin F From Spinach Chl		8e-04
1f9m_A	112	Crystal Structure Of Thioredoxin F From Spinach Chl		9e-04

>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin Length = 104

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 77  LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136
           L  ++DSD      L  ++   PI+I +  SWC+ C  +KP  E++A++ +  ++F Y+D
Sbjct: 1   LRSLSDSD----FQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMD 56
Query: 137 VNKVSKDLVK 146
                K + +
Sbjct: 57  AEDAEKTMAE 66

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  +Q +L+     +P+L+D+ A+WC  C  + P LE +AAE+  K++   +++++    
Sbjct: 13  DSFEQDVLKND---KPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGT 69
Query: 144 LVKRGNISV 152
             K G +S+
Sbjct: 70  AAKYGVMSI 78

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 81  NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140
           ++ D  D  + +A+E  + ++ID+ ASWC  C ++ P   + A +F   + F  VDV+++
Sbjct: 20  HNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDEL 78
Query: 141 SKDLVKRGNI 150
            K++ ++ N+
Sbjct: 79  -KEVAEKYNV 87

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 95  ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           E  +P ++D+ A WC  C  + P L++LA E+D ++  Y VD  K
Sbjct: 36  EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEK 80

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           +++D+ A+WC  C  + P +EK A ++ +   FY +DV++VS D+ ++  +S
Sbjct: 29  VVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDEVS-DVAQKAEVS 78

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           +++D+ A+WC  C  + P +EK A ++ +   FY +DV++VS D+ ++  +S
Sbjct: 22  VVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDEVS-DVAQKAEVS 71

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +P ++D+ A WC  C  + P LE+L+ E+  K+  Y V+V+K
Sbjct: 52  KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDK 93

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +P ++D+ A WC  C  + P LE+L+ E+  K+  Y V+V+K
Sbjct: 52  KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDK 93

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138
           ++P+L+D+ A+WC  C  + P LE++A E  T L    +DV+
Sbjct: 30  NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD 71

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138
           ++P+L+D+ A+WC  C  + P LE++A E  T L    +DV+
Sbjct: 25  NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD 66

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138
           P+++D+ A WC  C  L P+LEK+ A+   K+    VD++
Sbjct: 33  PVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDID 72

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 76  ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
           E++ +NDS   + +L    E   P+++D+ A WC  C  + P +++LA E+  K+  Y +
Sbjct: 1   EVQDVNDSSWKEFVL----ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKL 56
Query: 136 DVNK 139
           + ++
Sbjct: 57  NTDE 60

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 75  VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLK 131
           +E   +ND D    ++L   E S P+L+D+ A WC  C  + P ++++A E+  KLK
Sbjct: 1   MEAGAVND-DTFKNVVL---ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLK 53

>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas Reinhardtii Length = 112

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 87  DQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKF 132
           D  L + +E  +PI++D+ A+WC  C  + P  E L+ ++  K+ F
Sbjct: 14  DAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIF 59

>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Long Form) Length = 124

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISV 152
           +P+++D    WC  C  + PK EKLA E+   + F  +D N+ +K L K   I V
Sbjct: 38  KPVVLDMFTQWCGPCKAMAPKYEKLAEEY-LDVIFLKLDCNQENKTLAKELGIRV 91

>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Short Form) Length = 112

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISV 152
           +P+++D    WC  C  + PK EKLA E+   + F  +D N+ +K L K   I V
Sbjct: 26  KPVVLDMFTQWCGPCKAMAPKYEKLAEEY-LDVIFLKLDCNQENKTLAKELGIRV 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	5e-13
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	8e-12
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	1e-11
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	3e-11
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	7e-11
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	1e-10
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	1e-10
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	4e-10
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	5e-10
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	5e-10
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	6e-10
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	3e-09
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	3e-09
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	3e-09
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	6e-09
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	6e-09
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	7e-09
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	8e-09
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	9e-09
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	1e-08
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	1e-08
2l57_A	126	Uncharacterized protein; structural genomics, unkn	1e-08
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	2e-08
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	2e-08
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	2e-08
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	4e-08
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	9e-08
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	2e-07
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	4e-07
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	5e-07
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	5e-07
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	7e-07
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	8e-07
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	1e-06
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	1e-06
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	1e-06
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	1e-06
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	2e-06
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	3e-06
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	3e-06
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	4e-06
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	4e-06
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	4e-06
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	5e-06
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	5e-06
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	6e-06
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	7e-06
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	7e-06
2kuc_A	130	Putative disulphide-isomerase; structural genomics	8e-06
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	8e-06
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	9e-06
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	9e-06
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	1e-05
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	1e-05
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	1e-05
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	1e-05
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	1e-05
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	1e-05
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	2e-05
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	2e-05
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	2e-05
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-05
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-05
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	6e-05
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	8e-04
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	2e-05
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	3e-05
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	4e-05
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	4e-05
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	4e-05
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	1e-04
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	1e-04
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	3e-04
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	5e-04
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	5e-04
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	6e-04
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	7e-04
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	8e-04
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	9e-04

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 60.8 bits (148), Expect = 5e-13
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           I+     D  L + +E  +PI++D+ A+WC  C  + P  E L+ ++  K+ F  VDV
Sbjct: 7   IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDV 64

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 57.8 bits (140), Expect = 8e-12
 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
            ++ D  D  + +A+E  + ++ID+ ASWC  C ++ P   + A +F     F  VDV++
Sbjct: 19  CHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA-VFLKVDVDE 77

Query: 140 VSKDLVKRGNIS 151
           + K++ ++ N+ 
Sbjct: 78  L-KEVAEKYNVE 88

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 57.3 bits (139), Expect = 1e-11
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
            +     D  +   ++  + ++ID+ ASWC  C  + P   + A +F     F  VDV++
Sbjct: 11  CHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGA-IFLKVDVDE 69

Query: 140 VSKDLVKRGNIS 151
           + KD+ +  N+ 
Sbjct: 70  L-KDVAEAYNVE 80

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 56.2 bits (136), Expect = 3e-11
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
            +  +  ++ L +A E    +++D+ ASWC  C ++ P    LA +    + F  VD ++
Sbjct: 21  CHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDE 79

Query: 140 VSKDLVKRGNIS 151
           + K +     I 
Sbjct: 80  L-KSVASDWAIQ 90

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 55.5 bits (134), Expect = 7e-11
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           ++  +     +  A    + ++ID+ ASWC  C  + P    LA +F     F  VDV++
Sbjct: 17  VHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNA-VFLKVDVDE 75

Query: 140 VSKDLVKRGNIS 151
           + K + ++ ++ 
Sbjct: 76  L-KPIAEQFSVE 86

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 54.6 bits (132), Expect = 1e-10
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           + D   LD  L +A    + +++D+ A+WC  C  + PKL +L+ +F   +    VDV++
Sbjct: 5   VKDKADLDGQLTKASG--KLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 62

Query: 140 VSKDLVKRGNIS 151
             +D+    NIS
Sbjct: 63  -CEDIAMEYNIS 73

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 55.2 bits (133), Expect = 1e-10
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           I   +  DQ L  A    + +L ++ A WC     + P   +L+  +   L F  +DV++
Sbjct: 29  ITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDE 87

Query: 140 VSKDLVKRGNIS 151
           +  D      I 
Sbjct: 88  L-SDFSASWEIK 98

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 53.1 bits (128), Expect = 4e-10
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           I       + L  A +  + +++D+ A+WC  C  +KP    L+ ++ + + F  VDV+ 
Sbjct: 5   IESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61

Query: 140 VSKDLVKRGNIS 151
             +D+     + 
Sbjct: 62  C-QDVASESEVK 72

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 52.7 bits (127), Expect = 5e-10
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
            +  D   +   + +   + I++D+ ASWC  C  + P   +LA +F   + F  VDV
Sbjct: 9   CHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDV 65

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 52.7 bits (127), Expect = 5e-10
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           I       + L  A +  + +++D+ A+WC     +KP    L+ ++ + + F  VDV+ 
Sbjct: 16  IESKTAFQEALDAAGD--KLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDD 72

Query: 140 VSKDLVKRGNIS 151
             +D+     + 
Sbjct: 73  C-QDVASECEVK 83

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 52.7 bits (127), Expect = 6e-10
 Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 78  EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
                 + L   +    E  Q +L+      C  C  +  K+  +   ++  ++   + +
Sbjct: 3   NTFKTIEELATYI----EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILL 57

Query: 138 NK 139
             
Sbjct: 58  QD 59

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +         L  A    +  ++ +    C  C+ + P    ++ ++  +  F  VDV++
Sbjct: 6   VGSDPDFQPELSGAGS--RLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQ 62

Query: 140 VSKDLVKRGNIS 151
             +      NIS
Sbjct: 63  C-QGTAATNNIS 73

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 51.9 bits (124), Expect = 3e-09
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 74  SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFY 133
           S  L  +     +DQ +    E  + +++ +       C+ L   L K +++       Y
Sbjct: 2   SFLLPKLTSKKEVDQAIKSTAE--KVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIY 59

Query: 134 YVDVNKV 140
            VDV++ 
Sbjct: 60  LVDVDQT 66

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 50.7 bits (122), Expect = 3e-09
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           +  +  L++++   +   + I++D+ A WC  C  + PK+E LA E   +++F  VDV
Sbjct: 4   LATAADLEKLINENKG--RLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDV 58

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 50.0 bits (120), Expect = 6e-09
 Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +     L+ +L + +   + +++D+ A+WC  C  + P  ++L+ ++D    F  VDV+K
Sbjct: 18  LKQDGDLESLLEQHKN--KLVVVDFFATWCGPCKTIAPLFKELSEKYD--AIFVKVDVDK 73

Query: 140 VSKDLVKRGNIS 151
             ++  ++ NIS
Sbjct: 74  -LEETARKYNIS 84

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 50.1 bits (120), Expect = 6e-09
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           +   +    I+          +  + A WC  C  ++  +EK+A EF   +KF  VD 
Sbjct: 24  VYSVEQFRNIM----SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDA 76

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 50.0 bits (120), Expect = 7e-09
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +      D I+      ++ +++D+ A WC  C  + P  E+ +  +  K+ F  VDV++
Sbjct: 13  VTSQAEFDSII----SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDE 67

Query: 140 VSKDLVKRGNIS 151
           V  ++ ++ NI+
Sbjct: 68  V-SEVTEKENIT 78

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 49.6 bits (119), Expect = 8e-09
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +N       I+  A +  +P+++D    WC     + PK EKLA E+     F  +D N+
Sbjct: 10  VNKDT-FWPIVKAAGD--KPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDV-IFLKLDCNQ 65

Query: 140 VSKDLVKRGNIS 151
            +K L K   I 
Sbjct: 66  ENKTLAKELGIR 77

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 50.1 bits (120), Expect = 9e-09
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           + ++  L+Q+    Q     I+I + A WC+ C  +K   +     +   +    +DV+ 
Sbjct: 25  LKNTGSLNQVFSSTQN--SSIVIKFGAVWCKPCNKIKEYFKNQLNYYY--VTLVDIDVDI 80

Query: 140 VSKDLVKRGNIS 151
               L  + NI 
Sbjct: 81  H-PKLNDQHNIK 91

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +N       I+  A +  +P+++D    WC  C  + PK EKLA E+     F  +D N+
Sbjct: 23  VNKDT-FWPIVKAAGD--KPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDV-IFLKLDCNQ 78

Query: 140 VSKDLVKRGNIS 151
            +K L K   I 
Sbjct: 79  ENKTLAKELGIR 90

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           + +      ++    + +  ++ID+ A+WC  C  ++P L KL   +   ++F   DV
Sbjct: 17  LTNLTEFRNLI----KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAY-PDVRFVKCDV 69

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 49.4 bits (118), Expect = 1e-08
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 69  LSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128
           L     +  + IN  ++L+       +   P +I +    C  C+ ++ +L  ++ E + 
Sbjct: 3   LEGIKQINFQSINVVENLE-----EAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG 57

Query: 129 KLKFYYVDVNK 139
           K   YY  + +
Sbjct: 58  KFNIYYARLEE 68

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 8/58 (13%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           +  +   +++L    +    +++ + A W  +C  +   + +LA E   ++ F  ++ 
Sbjct: 17  VGSAGQFEELLRLKAK--SLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEA 71

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
              +   D  +       + +++D+ A+WC  C  + P +EK + ++  +  FY +DV
Sbjct: 11  FKTASEFDSAI----AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDV 63

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDV 137
           IND +     L       + I++ +  SW   C  LK   E ++ E  ++ + F  +D 
Sbjct: 5   INDQEQFTY-LTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDA 62

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 48.1 bits (115), Expect = 4e-08
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDV 137
           I+  D   Q+        + ++ID+ A+WC  C  + P  EK++      K+ FY VDV
Sbjct: 20  ISSYDQFKQVT----GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDV 74

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 47.0 bits (112), Expect = 9e-08
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 76  ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
           EL  I+ + +++++    +++   ++I    S    C+ +   L  LA +F  + KF   
Sbjct: 4   ELREISGNQYVNEVTNAEEDV--WVIIHLYRSSIPMCLLVNQHLSLLARKF-PETKFVKA 60

Query: 136 DVNKVSKDLVKRG 148
            VN   +      
Sbjct: 61  IVNSCIQHYHDNC 73

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 9/42 (21%), Positives = 21/42 (50%)

Query: 96  LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           +S+  +  + +  C  C   K  +E++A E    ++  Y++V
Sbjct: 1   MSKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINV 42

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
                 L++I     E    +L+D+ A+WC  C  L   L  +A      + F  VDV
Sbjct: 10  GTHEALLNRIK----EAPGLVLVDFFATWCGPCQRLGQILPSIAEANK-DVTFIKVDV 62

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
            +P ++D+ A WC  C  + P L++LA E+D ++  Y VD 
Sbjct: 38  DKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDT 78

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
            +  L+ +    C  C  + P LE+L   ++    FYYVDV
Sbjct: 22  GKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDV 62

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 44.8 bits (106), Expect = 7e-07
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 76  ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
           EL  I+ + +++++    ++L   ++I    S    C+ +   L  LA +F  + KF   
Sbjct: 11  ELREISGNQYVNEVTNAEKDL--WVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFVKA 67

Query: 136 DVNKVSKDL 144
            VN   +  
Sbjct: 68  IVNSCIEHY 76

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 44.8 bits (106), Expect = 8e-07
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
            +P ++D+ A WC  C  + P LE+L+ E+  K+  Y V+V
Sbjct: 51  DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNV 91

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 82  DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           +  +L Q+L ++     P+L  + +   + C+ L P LE LAA+++ +     +D 
Sbjct: 13  NESNLQQVLEQSMT--TPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDC 66

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           I D       ++ +     P+++D+ A WC  C  L P+LEK+ A+   K+    VD+
Sbjct: 17  IQDGPDFQDRVVNS---ETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDI 71

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 13/62 (20%), Positives = 23/62 (37%)

Query: 86  LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV 145
           L+     A     P+++    SWC  C  LKPK  +     +    F  V++    +   
Sbjct: 35  LEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKD 94

Query: 146 KR 147
           + 
Sbjct: 95  ED 96

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 96  LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
            S   L+D+ A+ C  C  + P LE+LAA+++ K     +DV
Sbjct: 18  ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDV 59

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 94  QELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYY--VDVNKVSKD 143
           Q L    ++   +  C  C    P+L + + E D  +  +     + +    
Sbjct: 28  QLLQGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELS 79

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           +   L+D+ A WC  C  + P LE+LA +   +LK   V+V
Sbjct: 50  APLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNV 90

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 73  TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKF 132
           T +    I   D L+Q L+ A+   +P+++D  A WC  C   +                
Sbjct: 9   THLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADT 66

Query: 133 YYVDVN 138
             +  N
Sbjct: 67  VLLQAN 72

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 42.3 bits (100), Expect = 4e-06
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           ++ +L+D  A WC  C   +P  +K+A ++  K  F  ++V
Sbjct: 21  NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNV 61

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVN 138
            ND   +D+ L R + +    ++++ A+W   C    P    L+ +++ T L F  VDV 
Sbjct: 12  FNDKT-IDEELERDKRV--TWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVG 68

Query: 139 K 139
           +
Sbjct: 69  R 69

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
             P++ID+ A WC  C    P   + AAE   K++F  V+ 
Sbjct: 55  DLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNT 95

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 42.4 bits (100), Expect = 5e-06
 Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
            N S+ ++ +       +  I++ + A WC+ C     +++KL   +  ++    VD+
Sbjct: 29  QNGSNIINGVN----MKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDL 82

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
              +L D+ A WC     + P LE+L  E   KLK   +DV
Sbjct: 17  EGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDV 57

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 41.9 bits (99), Expect = 6e-06
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
              +L+D+ A WC  C  + P LE++A E++ KL    +DV
Sbjct: 18  HPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDV 58

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 4/72 (5%)

Query: 67  PDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126
               R  +   +P+  S  +D  + R  +    IL+        +       + +L  EF
Sbjct: 9   ALWQRLLTRGWQPVEAST-VDDWIKRVGD--GVILLSSDPRRTPEVSDNPVMIAELLREF 65

Query: 127 -DTKLKFYYVDV 137
                +    D+
Sbjct: 66  PQFDWQVAVADL 77

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 42.4 bits (100), Expect = 7e-06
 Identities = 8/41 (19%), Positives = 22/41 (53%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
            +P+++ + +  C  C  ++P  E+ A E+ +   F  +++
Sbjct: 24  KKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINI 64

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL--EKLAAEFDTKLKFYYVDV 137
             +     + L RA+   + + +D   +WC  C  L   +  + L A++  +  F  + +
Sbjct: 11  FRELS-FPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR-HFVNLKM 68

Query: 138 N 138
           +
Sbjct: 69  D 69

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 42.5 bits (100), Expect = 8e-06
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
             P+L+D+ A WC  C  + P+ +  AA    +++   +D 
Sbjct: 64  DLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDT 104

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 41.5 bits (98), Expect = 9e-06
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
             P+++D+ A WC  C  + P +++LA E+  K+  Y ++ 
Sbjct: 18  EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNT 58

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 41.6 bits (98), Expect = 9e-06
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
               ++D+ A WC  C    P+ E LA     K++   VD 
Sbjct: 21  KTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDC 61

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
             P+L+D+ A+WC  C  + P LE+ A     K+    ++V
Sbjct: 17  DGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNV 57

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
            +P+L+D+ A WC  C  + P +E+LA E++ K+K   V+V
Sbjct: 19  DKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNV 59

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           S P+L+D+ A WC  C  + P ++++A E+  KLK   ++ 
Sbjct: 19  SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNT 59

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 66  WPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE 125
           W  ++         + D+     +L      ++P+L+D+ A+WC  C  + P LE++A E
Sbjct: 3   WGSMTDSEKSATIKVTDASFATDVL----SSNKPVLVDFWATWCGPCKMVAPVLEEIATE 58

Query: 126 FDTKLKFYYVDV 137
             T L    +DV
Sbjct: 59  RATDLTVAKLDV 70

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
               ++ +  + C  C  ++  L+K  A    ++    VD 
Sbjct: 19  LSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDS 58

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 27/41 (65%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
            +P+L+D+ A+WC  C  + P LE +AAE+  K++   +++
Sbjct: 23  DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNI 63

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
            QP+L+ + ASWC  C  + P +   A  +  +LK   +++
Sbjct: 25  EQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 65

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
              IL+D+ A WC     + P L+++A E+  KL    +++
Sbjct: 40  DGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNI 80

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
              IL+D+ A WC  C  + P L+++A E+  KL    +++
Sbjct: 20  DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
            +P L+D+ A W      L P+L K +     +LK   +D     + L    NI 
Sbjct: 455 KEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTI-HEGLCNMYNIQ 508

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 7/105 (6%)

Query: 47  VDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMA 106
                      RD      W     P +     +      +++L    +     ++D+ A
Sbjct: 631 AYQYHSYNGWNRDAYSLRSWGLGFLPQASI--DLTPQTFNEKVL----QGKTHWVVDFYA 684

Query: 107 SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
            W        P+ E LA     K++   VD         ++  I 
Sbjct: 685 PWSGPSQNFAPEFELLARMIKGKVRAGKVDCQA-YPQTCQKAGIK 728

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 68  DLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127
           DL  P+ V L P   ++ + Q     ++  +  ++D+ + W      L P+ +++A    
Sbjct: 539 DLRNPSVVSLTPSTFNELVKQ-----RKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT 593

Query: 128 TKLKFYYVDVNKVSKDLVKRGNIS 151
             +    VD  +       + N+ 
Sbjct: 594 GLINVGSVDCGQ-YHSFCTQENVQ 616

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 37.8 bits (87), Expect = 8e-04
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           +   +++ +        L P   + A E D  L+   V+     + L +   ++
Sbjct: 134 ELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGD-DRMLCRMKGVN 186

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           S  +L+D+ A WC  C  + P L ++  EF  K+    V++
Sbjct: 20  SGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNI 60

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
            +  ++D+ A WC  C+ L P +E+LA ++  ++ F  ++ 
Sbjct: 16  HEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNS 55

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 82  DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141
             D+ +  +      +  +L+++ A WC     L P+ E  A      +    VD    +
Sbjct: 7   TDDNFESRISDTGS-AGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTA-N 64

Query: 142 KDLVKRGNIS 151
            +   +  +S
Sbjct: 65  TNTCNKYGVS 74

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
              IL+D+ A WC  C  + P L+++A E+  KL    +++
Sbjct: 30  DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 70

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 106 ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           +  C  C      +++   EF  K+    +D+
Sbjct: 10  SPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDI 41

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 78  EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLE--KLAAEFDTKLKFYYV 135
           E  +    + + L   +   +P L+ + A+WC  C  L   L   K  A      +   +
Sbjct: 10  EHADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKI 69

Query: 136 DVNKVSKD 143
           DV    ++
Sbjct: 70  DVGNFDRN 77

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 9/69 (13%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 86  LDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKV-S 141
             + L  AQ   + +++ + +  C  C  +   +     ++   + +     V V+    
Sbjct: 8   YPEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEG 67

Query: 142 KDLVKRGNI 150
           ++L +R  +
Sbjct: 68  QELARRYRV 76

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVD--VNKVSKDLVK 146
            + +L+ + A WC  C  L P  ++LA  +    + +    +D   N V   +++
Sbjct: 376 KKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIE 430

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNIS 151
             +L ++ A WC  C  + P+  K A    +  +    +D  + ++DL    NI 
Sbjct: 32  DLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE-NQDLCMEHNIP 85

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNIS 151
             L+++ A WC  C  L     K A   D  ++   V+ +    K L  + +++
Sbjct: 37  TSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVN 90

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} Length = 151

 Score = 37.0 bits (85), Expect = 6e-04
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 86  LDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSK 142
            ++ L  AQ+  +P+++      C+    LK      E++      K     +      K
Sbjct: 33  YEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDK 92

Query: 143 DLVKRGN 149
           +L   G 
Sbjct: 93  NLSPDGQ 99

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVD--VNKVSKDLVK 146
            + + +++ A WC  C  L P  +KL   +     +    +D   N+V    V 
Sbjct: 267 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVH 320

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVDVNKVSKDLVKRGNIS 151
              +L+++ A WC  C    P+ EK+A      D  +    +D    +  L  R ++S
Sbjct: 32  KDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS-ASVLASRFDVS 88

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVDVNKVSKDLVKRGNIS 151
             IL+++ A WC  C  L P+ EK A E       +    VD      DL KR ++S
Sbjct: 148 DIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA-ETDLAKRFDVS 203

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.86
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.86
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.78
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.77
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.77
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.76
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.76
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.75
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.74
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.74
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.74
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.74
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.74
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.73
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.73
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.73
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.73
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.72
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.72
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.72
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.71
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.71
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.71
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.71
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.71
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.71
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.71
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.7
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.7
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.7
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.7
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.7
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.7
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.69
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.69
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.69
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.69
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.69
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.69
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.68
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.68
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.68
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.68
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.68
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.68
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.68
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.68
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.67
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.67
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.67
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.67
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.67
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.67
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.67
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.67
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.67
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.66
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.66
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.66
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.66
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.66
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.66
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.66
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.65
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.65
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.65
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.64
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.64
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.64
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.63
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.63
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.63
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.63
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.62
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.62
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.61
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.61
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.61
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.6
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.6
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.6
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.59
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.59
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.59
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.58
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.57
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.56
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.56
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.55
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.55
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.55
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.55
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.54
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.53
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.53
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.53
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.52
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.52
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.52
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.26
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.51
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.51
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.5
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.5
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.24
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.49
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.48
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.48
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.48
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.48
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.48
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.47
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.46
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.46
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.46
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.46
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.45
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.45
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.45
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.44
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.44
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.44
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.43
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.43
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.42
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.42
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.41
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.4
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.4
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.4
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.4
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.4
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.39
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.39
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.38
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.38
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.38
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.37
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.37
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.36
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.35
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.34
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.34
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.34
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.33
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.33
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.33
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.31
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.31
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.31
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.31
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.29
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.29
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.28
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.28
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.27
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.27
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.26
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.25
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.25
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.89
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.24
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.24
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.23
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.22
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.21
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.21
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.21
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.2
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.19
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.19
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.19
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.19
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.19
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.81
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.17
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.17
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.16
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.16
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.16
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.15
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.15
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.1
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.1
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.09
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.09
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.09
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.09
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.08
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.07
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.07
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.07
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.07
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.02
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.99
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.98
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.97
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.97
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.97
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.96
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.96
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.95
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.95
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.94
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	98.94
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	98.93
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.92
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.92
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.91
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.91
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.9
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.9
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.89
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.89
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.88
3me7_A	170	Putative uncharacterized protein; electron transfe	98.86
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.86
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.85
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	98.83
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.82
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.81
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.81
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.79
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.79
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.78
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.77
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.77
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.74
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.74
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	98.7
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.67
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.66
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.66
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.65
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.62
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.61
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.58
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.57
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.57
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.52
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.48
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.44
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.43
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.41
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.38
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	98.34
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.33
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	98.32
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.31
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	98.26
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.21
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	98.2
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.19
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.18
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	98.08
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	98.06
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.05
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	97.99
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.99
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	97.96
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	97.96
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	97.94
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	97.93
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.93
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.93
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.92
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	97.89
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.87
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	97.87
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.81
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	97.79
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	97.79
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.58
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	97.47
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	97.36
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	97.35
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.33
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	97.31
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	97.28
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	97.19
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	97.03
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	96.79
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	96.78
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	96.77
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	96.66
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	96.62
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	96.59
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	96.53
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	96.47
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	96.29
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	96.27
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	96.09
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	95.96
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	95.96
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	95.95
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	95.82
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	95.8
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	95.25
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	94.73
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	94.49
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	94.44
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	94.29
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.34
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	93.13
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	92.77
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	92.75
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	91.41
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	91.13
3l78_A	120	Regulatory protein SPX; transcription, transcripti	90.6
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	90.57
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	90.55
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	90.32
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	89.93
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	89.38
3fz4_A	120	Putative arsenate reductase; APC61768, structural	88.9
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	87.84
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	87.1
3gkx_A	120	Putative ARSC family related protein; ARSC family	84.68
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	81.78
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	81.06

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.86  E-value=2.6e-21  Score=133.42  Aligned_cols=77  Identities=22%  Similarity=0.455  Sum_probs=69.9

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI  156 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~  156 (156)
                      +..|.+.++|++.+..  ..+++++|+|||+||+||+.+.|.++++++.+++ +.|++||++++++++++|+|.++|+.+
T Consensus         2 V~~i~~~~~f~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~~~~l~~~~~V~~~PT~~   78 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNE--AGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD-VVFLKVDVDECEDIAQDNQIACMPTFL   78 (105)
T ss_dssp             CEECCSHHHHHHHHHH--TTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEETTTCHHHHHHTTCCBSSEEE
T ss_pred             eEEeCCHHHHHHHHHh--cCCCEEEEEEECCCCCCccCCCcchhhhhhccCC-eEEEEEecccCHHHHHHcCCCeecEEE
Confidence            3568888999999975  4579999999999999999999999999999874 999999999999999999999999753

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.86  E-value=8.4e-22  Score=145.32  Aligned_cols=78  Identities=18%  Similarity=0.219  Sum_probs=71.3

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI  156 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~  156 (156)
                      +..+.+.++|++.+..  ..+++|||+|||+|||||+.+.|.|+++++++++++.|++||+|++++++.+|+|.++|+.+
T Consensus        23 v~~l~t~~~f~~~v~~--~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~  100 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVN--EDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVM  100 (160)
T ss_dssp             CEECCSHHHHHHHHHH--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEE
T ss_pred             hhccCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence            5678889999988852  36899999999999999999999999999999877999999999999999999999999863

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.78  E-value=2.8e-19  Score=129.23  Aligned_cols=76  Identities=11%  Similarity=0.072  Sum_probs=67.7

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCC--hhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWC--RKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC--~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ...++ .++|++.+.   ..++++||+|||+||  +||+.+.|++++++++|.+++.|++||+|++++++.+|||.++|+
T Consensus        17 ~~~vt-~~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPT   92 (137)
T 2qsi_A           17 PTLVD-EATVDDFIA---HSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPS   92 (137)
T ss_dssp             CEEEC-TTTHHHHHH---TSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSE
T ss_pred             CcccC-HhHHHHHHh---cCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCE
Confidence            45665 468999885   345599999999999  999999999999999998889999999999999999999999997


Q ss_pred             cC
Q 031608          155 QI  156 (156)
Q Consensus       155 ~~  156 (156)
                      .|
T Consensus        93 li   94 (137)
T 2qsi_A           93 LA   94 (137)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.77  E-value=7.8e-19  Score=127.57  Aligned_cols=77  Identities=14%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..+.+.++|++.+..  ..++++||+|||+||++|+.+.|.++++++++++.+.|+.||++++++++++|+|.++|+.
T Consensus         5 l~~i~~~~~~~~~i~~--~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~   81 (149)
T 3gix_A            5 LPKLTSKKEVDQAIKS--TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPST   81 (149)
T ss_dssp             CCEECSHHHHHHHHHH--CCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEE
T ss_pred             eeecCCHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeE
Confidence            4556778899998853  4689999999999999999999999999999987799999999999999999999999975

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.77  E-value=3.6e-18  Score=115.92  Aligned_cols=77  Identities=13%  Similarity=0.295  Sum_probs=70.1

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..+.+.++|++.+..  ..+++++|+|||+||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++|+.
T Consensus         2 ~v~~i~~~~~~~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~   78 (107)
T 1gh2_A            2 GVKPVGSDPDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQGTAATNNISATPTF   78 (107)
T ss_dssp             CEEEECSGGGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             ceEEecCHHHHHHHHHh--CCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHhcCCCcccEE
Confidence            46788888999999963  368999999999999999999999999999995 599999999999999999999999974

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.76  E-value=5.9e-18  Score=118.81  Aligned_cols=80  Identities=19%  Similarity=0.388  Sum_probs=73.3

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..+..+.+.++|++.+..+...+++++|+|||+||++|+.+.|.|++++++++ ++.|+.||++++++++++|+|.++|+
T Consensus        16 ~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt   94 (124)
T 1xfl_A           16 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAMPT   94 (124)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             CcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHHcCCCccCE
Confidence            45788888999999998665579999999999999999999999999999997 69999999999999999999999987


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        95 ~   95 (124)
T 1xfl_A           95 F   95 (124)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.76  E-value=5.3e-18  Score=115.50  Aligned_cols=80  Identities=26%  Similarity=0.510  Sum_probs=71.8

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..+++.++|++.+..+...+++++|.||++||++|+.+.|.|+++++++++++.|+.||++++++++++|+|.++|+.
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   82 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF   82 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEE
Confidence            46788888999999975333389999999999999999999999999999986799999999999999999999999874

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.75  E-value=2.8e-18  Score=118.96  Aligned_cols=75  Identities=19%  Similarity=0.352  Sum_probs=68.2

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ....+.++|++++..  ..+++++|+|||+||++|+.+.|.++++++++++ +.|+.||++++++++++|+|.++|+.
T Consensus        14 ~~~~t~~~f~~~l~~--~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~   88 (116)
T 3qfa_C           14 KQIESKTAFQEALDA--AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKSMPTF   88 (116)
T ss_dssp             BCCCCHHHHHHHHHH--HTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             cCCCCHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCccccEE
Confidence            445678899999964  3799999999999999999999999999999986 99999999999999999999999874

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.74  E-value=4.2e-19  Score=120.50  Aligned_cols=74  Identities=9%  Similarity=0.133  Sum_probs=52.7

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      |..|++.++|++++    .++++++|+|||+||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++|+.
T Consensus         2 m~~i~~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~   75 (105)
T 4euy_A            2 MNTFKTIEELATYI----EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIAGRYAVFTGPTV   75 (105)
T ss_dssp             --------CCSSST----TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC---------CCCCEE
T ss_pred             ccccCCHHHHHHHH----hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCCHHHHHhcCCCCCCEE
Confidence            45677777888777    479999999999999999999999999999996 699999999999999999999999974

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.74  E-value=2.3e-18  Score=124.16  Aligned_cols=77  Identities=18%  Similarity=0.266  Sum_probs=68.3

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..+.+.++|++.+..  ..+++++|+|||+||++|+.+.|.++++++++.+++.|+.||++++++++++|+|.++|+.
T Consensus         5 l~~i~~~~~~~~~v~~--~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~   81 (142)
T 1qgv_A            5 LPHLHNGWQVDQAILS--EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTV   81 (142)
T ss_dssp             SCBCCSHHHHHHHHHT--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEE
T ss_pred             HhccCCHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEE
Confidence            3456778899887742  2589999999999999999999999999999977799999999999999999999999874

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.74  E-value=6.3e-19  Score=127.77  Aligned_cols=75  Identities=12%  Similarity=0.077  Sum_probs=67.6

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCC--ChhHHhhhHHHHHHHHHhcCC-eEEEEEECCCCHHHHHHhCCccce
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFDTK-LKFYYVDVNKVSKDLVKRGNISVS  153 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~W--C~~Ck~~~p~l~~la~~~~~~-v~~~~vd~d~~~~l~~~~~i~sv~  153 (156)
                      +..+ +.++|++.+.    +++++||+|||+|  ||||+.+.|.+++++++|.++ +.|++||+|++++++.+|||+++|
T Consensus        19 ~~~~-t~~~F~~~v~----~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIP   93 (140)
T 2qgv_A           19 WTPV-SESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFP   93 (140)
T ss_dssp             CEEC-CHHHHHHHHH----TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSS
T ss_pred             CccC-CHHHHHHHHh----CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCC
Confidence            3455 4679999983    5789999999999  999999999999999999888 999999999999999999999999


Q ss_pred             ecC
Q 031608          154 IQI  156 (156)
Q Consensus       154 ~~~  156 (156)
                      +.|
T Consensus        94 Tli   96 (140)
T 2qgv_A           94 ATL   96 (140)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            753

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.74  E-value=8.4e-18  Score=117.84  Aligned_cols=76  Identities=9%  Similarity=0.204  Sum_probs=66.2

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc-----CCeEEEEEECCCCHHHHHHhCCc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-----TKLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~-----~~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      .+..++ .++|++.+.   ..+++++|+|||+||++|+.+.|.|+++++.+.     +++.|+.||++++++++++|+|.
T Consensus        16 ~v~~l~-~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~   91 (127)
T 3h79_A           16 RVVELT-DETFDSIVM---DPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVS   91 (127)
T ss_dssp             CCEECC-TTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCC
T ss_pred             ceEECC-hhhHHHHHh---CCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCc
Confidence            456665 568998884   358999999999999999999999999998753     46999999999999999999999


Q ss_pred             cceec
Q 031608          151 SVSIQ  155 (156)
Q Consensus       151 sv~~~  155 (156)
                      ++|+.
T Consensus        92 ~~Pt~   96 (127)
T 3h79_A           92 GFPTM   96 (127)
T ss_dssp             SSSEE
T ss_pred             cCCEE
Confidence            99864

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.74  E-value=1.8e-17  Score=111.47  Aligned_cols=76  Identities=20%  Similarity=0.413  Sum_probs=69.6

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..|++.++|++.+..  ..+++++|.|||+||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|.++|+.
T Consensus         2 v~~i~~~~~~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~   77 (105)
T 3m9j_A            2 VKQIESKTAFQEALDA--AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASESEVKSMPTF   77 (105)
T ss_dssp             CEECCSHHHHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCHHHHHHTTCCBSSEE
T ss_pred             eEEcCCHHHHHHHHHh--cCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhHHHHHHcCCCcCcEE
Confidence            4578889999999964  3699999999999999999999999999999985 99999999999999999999999875

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.73  E-value=1.9e-17  Score=114.64  Aligned_cols=79  Identities=22%  Similarity=0.386  Sum_probs=71.1

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ....+.+.++|++.+..+...+++++|+||++||++|+.+.|.|+++++++++ +.|+.||++++++++++|+|.++|+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~   91 (122)
T 2vlu_A           13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPTF   91 (122)
T ss_dssp             CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCHHHHHHcCCCcccEE
Confidence            45667778899999975445799999999999999999999999999999986 99999999999999999999999874

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.73  E-value=9.4e-18  Score=116.16  Aligned_cols=76  Identities=17%  Similarity=0.443  Sum_probs=69.8

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..+..+++.++|++++.    ++++++|+|||+||++|+.+.|.++++++++++ +.|+.||++++++++++|+|.++|+
T Consensus        12 ~~~~~~~~~~~~~~~~~----~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt   86 (114)
T 2oe3_A           12 TSITKLTNLTEFRNLIK----QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESPDIAKECEVTAMPT   86 (114)
T ss_dssp             GGSCBCCSHHHHHHHHH----HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSBSE
T ss_pred             hheeecCCHHHHHHHHh----CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCcccE
Confidence            35677888999999884    589999999999999999999999999999986 9999999999999999999999987


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        87 ~   87 (114)
T 2oe3_A           87 F   87 (114)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.73  E-value=2.1e-17  Score=117.19  Aligned_cols=80  Identities=20%  Similarity=0.304  Sum_probs=72.3

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..+..+.+.++|++.+..+...+++++|+|||+||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++|+
T Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt  102 (139)
T 3d22_A           24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDELSDFSASWEIKATPT  102 (139)
T ss_dssp             TTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCEESE
T ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcccHHHHHHcCCCcccE
Confidence            35788888899999987654568999999999999999999999999999986 59999999999999999999999987


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus       103 ~  103 (139)
T 3d22_A          103 F  103 (139)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.73  E-value=1.9e-17  Score=113.38  Aligned_cols=73  Identities=19%  Similarity=0.518  Sum_probs=66.8

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ....+.++|++++    ..+++++|+|||+||++|+.+.|.++++++++++ +.|+.||++++++++++|+|.++|+.
T Consensus         9 ~~~~~~~~f~~~~----~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~~~~~l~~~~~v~~~Pt~   81 (109)
T 3f3q_A            9 TQFKTASEFDSAI----AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDELGDVAQKNEVSAMPTL   81 (109)
T ss_dssp             EECCSHHHHHHHT----TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cCCCCHHHHHHHH----hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCCccCEE
Confidence            4456788999998    5699999999999999999999999999999975 99999999999999999999999875

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.72  E-value=2.8e-17  Score=111.50  Aligned_cols=76  Identities=24%  Similarity=0.469  Sum_probs=68.3

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..+ +.++|++.+.   ..+++++|.|||+||++|+.+.|.++++++++++++.|+.||++++++++++|+|.++|+.
T Consensus         5 ~v~~l-~~~~~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~   80 (111)
T 3gnj_A            5 SLEKL-DTNTFEQLIY---DEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQI   80 (111)
T ss_dssp             CSEEC-CHHHHHHHHT---TSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEE
T ss_pred             cceec-CHHHHHHHHH---hcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEE
Confidence            45566 5778999884   3689999999999999999999999999999987799999999999999999999999864

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.72  E-value=2.2e-17  Score=112.76  Aligned_cols=78  Identities=19%  Similarity=0.269  Sum_probs=65.7

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~-~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..+++.++|++++.. ...+++++|+|||+||++|+.+.|.++++++++. +++.|+.||++++++++++|+|.++|+.
T Consensus         2 v~~i~~~~~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   80 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTT-AAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYF   80 (112)
T ss_dssp             EEEECCHHHHHHHHTT-TTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccCCHHHHHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEE
Confidence            4677877899999842 1248999999999999999999999999999852 3599999999999999999999999975

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.72  E-value=1.1e-17  Score=132.00  Aligned_cols=77  Identities=22%  Similarity=0.408  Sum_probs=68.5

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .++.++ .++|++++..  ..+++|+|+|||+||+||+.+.|.++++++++++++.|++||++++++++.+|+|.++|+.
T Consensus         8 ~v~~~~-~~~f~~~~~~--~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   84 (287)
T 3qou_A            8 NIVNIN-ESNLQQVLEQ--SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTV   84 (287)
T ss_dssp             TEEECC-TTTHHHHHTT--TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEE
T ss_pred             ccEECC-HHHHHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeE
Confidence            456665 5689998842  2489999999999999999999999999999987899999999999999999999999975

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.71  E-value=4.7e-17  Score=111.56  Aligned_cols=79  Identities=19%  Similarity=0.384  Sum_probs=72.2

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..+.+.++|++.+..+...+++++|.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|++.++|+.
T Consensus         7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~   85 (118)
T 2vm1_A            7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELKDVAEAYNVEAMPTF   85 (118)
T ss_dssp             CEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSBSEE
T ss_pred             ceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCHHHHHHcCCCcCcEE
Confidence            4678888999999997655568999999999999999999999999999987 599999999999999999999999875

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.71  E-value=7.4e-17  Score=108.42  Aligned_cols=77  Identities=23%  Similarity=0.475  Sum_probs=69.2

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..+++.++|++.+..  ..+++++|.||++||++|+.+.|.++++++++++++.++.+|++++++++++|++.++|+.
T Consensus         2 v~~l~~~~~~~~~l~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~   78 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTF   78 (106)
T ss_dssp             EEECCSHHHHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ceecCCHHHHHHHHHh--cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEE
Confidence            4567776899999863  3789999999999999999999999999999966799999999999999999999999874

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.71  E-value=5.8e-17  Score=110.28  Aligned_cols=79  Identities=20%  Similarity=0.408  Sum_probs=72.4

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..+.+.++|++.+..+...+++++|.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|++.++|+.
T Consensus         5 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt~   83 (113)
T 1ti3_A            5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAMPTF   83 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHHHHHHHHCSSTTEE
T ss_pred             ceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccHHHHHhCCCCcccEE
Confidence            4778888999999998665579999999999999999999999999999987 599999999999999999999999874

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.71  E-value=3.1e-17  Score=123.27  Aligned_cols=77  Identities=14%  Similarity=0.113  Sum_probs=67.0

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeC-------CCChhHHhhhHHHHHHHHHhc-----CCeEEEEEECCCCHHH
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFD-----TKLKFYYVDVNKVSKD  143 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A-------~WC~~Ck~~~p~l~~la~~~~-----~~v~~~~vd~d~~~~l  143 (156)
                      .++.++ .++|++++..  ..+.++||+|||       +||++|+.+.|.|+++++++.     +++.|++||+|+++++
T Consensus        19 ~vi~lt-~~nF~~~v~~--~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~l   95 (178)
T 3ga4_A           19 GVITVT-ADNYPLLSRG--VPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQL   95 (178)
T ss_dssp             SEEECC-TTTHHHHTTC--CTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHH
T ss_pred             CCEECC-HHHHHHHHcc--cCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHH
Confidence            467775 5589998741  236689999999       499999999999999999987     6899999999999999


Q ss_pred             HHHhCCccceec
Q 031608          144 LVKRGNISVSIQ  155 (156)
Q Consensus       144 ~~~~~i~sv~~~  155 (156)
                      +++|||+++|+-
T Consensus        96 a~~~~I~siPtl  107 (178)
T 3ga4_A           96 VKDLKLQNVPHL  107 (178)
T ss_dssp             HHHTTCCSSCEE
T ss_pred             HHHcCCCCCCEE
Confidence            999999999974

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.71  E-value=4.4e-17  Score=114.82  Aligned_cols=74  Identities=22%  Similarity=0.363  Sum_probs=68.1

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..+++.++|++++    ..++++||+|||+||++|+.+.|.|++++++++ ++.|+.||++++++++++|+|.++|+.
T Consensus        21 v~~l~~~~~f~~~~----~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~   94 (125)
T 1r26_A           21 VVDVYSVEQFRNIM----SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTF   94 (125)
T ss_dssp             CEEECCHHHHHHHH----HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             eEECCCHHHHHHHH----ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHcCCCcccEE
Confidence            57788768999998    479999999999999999999999999999986 599999999999999999999999974

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.71  E-value=5.7e-17  Score=111.77  Aligned_cols=75  Identities=21%  Similarity=0.486  Sum_probs=68.3

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..+++.++|++.+..  ..+++++|+|||+||++|+.+.|.++++++++  ++.++.||++++++++++|+|.++|+.
T Consensus        15 v~~l~~~~~~~~~l~~--~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~   89 (117)
T 2xc2_A           15 LIELKQDGDLESLLEQ--HKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLEETARKYNISAMPTF   89 (117)
T ss_dssp             EEECCSTTHHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             eEEeCCHHHHHHHHHh--CCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccHHHHHHcCCCccceE
Confidence            6788877899999863  37899999999999999999999999999988  599999999999999999999999874

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.71  E-value=4e-17  Score=110.07  Aligned_cols=73  Identities=21%  Similarity=0.428  Sum_probs=66.4

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..+ +.++|++++.    ++++++|+|||+||++|+.+.|.++++++.+++++.|+.+|++++++++++|+|.++|+.
T Consensus         7 ~~l-~~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~   79 (109)
T 3tco_A            7 LVL-TEENFDEVIR----NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTT   79 (109)
T ss_dssp             EEC-CTTTHHHHHH----HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             EEe-cHHHHHHHHh----cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEE
Confidence            344 5678999985    489999999999999999999999999999987899999999999999999999999874

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.70  E-value=8e-17  Score=108.40  Aligned_cols=73  Identities=22%  Similarity=0.489  Sum_probs=65.2

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..++ .++|++++    ..+++++|.||++||++|+.+.|.++++++++++++.++.+|++++++++++|+|.++|+.
T Consensus         3 ~~l~-~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~   75 (105)
T 1nsw_A            3 MTLT-DANFQQAI----QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL   75 (105)
T ss_dssp             EEEC-TTTHHHHH----SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             eecc-HHhHHHHH----hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEE
Confidence            4555 45788777    5789999999999999999999999999999987799999999999999999999999874

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.70  E-value=9.1e-17  Score=107.62  Aligned_cols=76  Identities=24%  Similarity=0.504  Sum_probs=68.3

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..+++.++|++.+..  ..+++++|.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|++.++|+.
T Consensus         1 v~~i~~~~~~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~   76 (104)
T 2vim_A            1 MRVLATAADLEKLINE--NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAKYSVTAMPTF   76 (104)
T ss_dssp             CEECCSHHHHHHHHHT--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CeecCCHHHHHHHHHh--cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCHHHHHHcCCccccEE
Confidence            3567777899999953  368999999999999999999999999999987 699999999999999999999999874

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.70  E-value=8.3e-17  Score=116.61  Aligned_cols=78  Identities=17%  Similarity=0.347  Sum_probs=70.3

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..+..+++.++|++++..  ..++++||+|||+||++|+.+.|.|++++++++ ++.|+.||++++++++++|+|.++|+
T Consensus        12 ~~v~~l~~~~~~~~~~~~--~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt   88 (153)
T 2wz9_A           12 AAVEEVGSAGQFEELLRL--KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEISSVPT   88 (153)
T ss_dssp             CCSEEECSHHHHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             CCeEEcCCHHHHHHHHHh--cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECCCCHHHHHHcCCCCCCE
Confidence            457888888899999963  238999999999999999999999999999986 59999999999999999999999987


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        89 ~   89 (153)
T 2wz9_A           89 F   89 (153)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.70  E-value=9.1e-17  Score=111.66  Aligned_cols=75  Identities=25%  Similarity=0.396  Sum_probs=66.5

Q ss_pred             eEecC-ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPIN-DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~-~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..+. +.++|++.+.   +++++++|+|||+||++|+.+.|.|+++++++ +++.|+.||++++++++++|+|.++|+.
T Consensus         5 v~~~~g~~~~~~~~~~---~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~   80 (118)
T 2f51_A            5 IVHFNGTHEALLNRIK---EAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGNAADAYGVSSIPAL   80 (118)
T ss_dssp             SEEECSCHHHHHHHHH---HCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ceEecCCHHHHHHHHH---hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCHHHHHhcCCCCCCEE
Confidence            45665 6778886554   46899999999999999999999999999998 5699999999999999999999999875

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.70  E-value=5.6e-17  Score=113.42  Aligned_cols=76  Identities=17%  Similarity=0.329  Sum_probs=67.3

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..++ .++|++.+.   ..+++++|+|||+||++|+.+.|.++++++++++.+.|+.||++++++++++|+|.++|+.
T Consensus        18 ~v~~l~-~~~f~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   93 (130)
T 2dml_A           18 DVIELT-PSNFNREVI---QSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTI   93 (130)
T ss_dssp             SSEECC-TTTHHHHTT---TCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEE
T ss_pred             CcEECC-HHHHHHHHh---cCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEE
Confidence            456665 468888654   4689999999999999999999999999999987799999999999999999999999874

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.70  E-value=9.8e-17  Score=111.28  Aligned_cols=76  Identities=24%  Similarity=0.450  Sum_probs=67.8

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ...+.+.++|++.+.   ..++++||+||++||++|+.+.|.|+++++++.+++.|+.||++++++++++|+|.++|+.
T Consensus        14 ~~~~~~~~~f~~~v~---~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~   89 (119)
T 1w4v_A           14 TFNIQDGPDFQDRVV---NSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV   89 (119)
T ss_dssp             EEECCSHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             EEEecChhhHHHHHH---cCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEE
Confidence            455566788988764   4689999999999999999999999999999977799999999999999999999999874

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.69  E-value=7.7e-17  Score=114.35  Aligned_cols=79  Identities=23%  Similarity=0.417  Sum_probs=67.7

Q ss_pred             ceEecCChhhHHHHHHHhhc--------CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHh
Q 031608           76 ELEPINDSDHLDQILLRAQE--------LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR  147 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~--------~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~  147 (156)
                      .+..++ .++|++.+.....        .++++||+|||+||++|+.+.|.++++++++++++.|+.||++++++++++|
T Consensus        23 ~v~~l~-~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  101 (141)
T 3hxs_A           23 GTIHLT-RAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDF  101 (141)
T ss_dssp             CCEECC-HHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHT
T ss_pred             Cccccc-HHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHHc
Confidence            456664 6688888742100        4899999999999999999999999999999878999999999999999999


Q ss_pred             CCccceec
Q 031608          148 GNISVSIQ  155 (156)
Q Consensus       148 ~i~sv~~~  155 (156)
                      +|.++|+.
T Consensus       102 ~v~~~Pt~  109 (141)
T 3hxs_A          102 GIQSIPTI  109 (141)
T ss_dssp             TCCSSSEE
T ss_pred             CCCCcCEE
Confidence            99999874

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.69  E-value=2.6e-17  Score=116.97  Aligned_cols=76  Identities=16%  Similarity=0.284  Sum_probs=67.5

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..+++.++|++++..  ..++++||+|||+||++|+.+.|.|+++++++  ++.|+.||++++++++++|+|.++|+.
T Consensus        21 ~v~~l~~~~~~~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~   96 (133)
T 3cxg_A           21 IYIELKNTGSLNQVFSS--TQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPKLNDQHNIKALPTF   96 (133)
T ss_dssp             EEEECCCTTHHHHHHTC---CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cEEEecChhHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchHHHHHhcCCCCCCEE
Confidence            46788888899999853  34789999999999999999999999998877  499999999999999999999999875

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.69  E-value=1.4e-16  Score=108.74  Aligned_cols=77  Identities=25%  Similarity=0.381  Sum_probs=66.9

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC-CCHHHHHHhCCccce
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGNISVS  153 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d-~~~~l~~~~~i~sv~  153 (156)
                      ..+..+++ ++|++.+..  ..+++++|+|||+||++|+.+.|.++++++++++ +.|+.||++ ++++++++|+|.++|
T Consensus         5 ~~v~~l~~-~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~v~~~P   80 (111)
T 2pu9_C            5 GKVTEVNK-DTFWPIVKA--AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVP   80 (111)
T ss_dssp             TSEEEECT-TTHHHHHTT--CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSBSS
T ss_pred             CccEEech-HHHHHHHHh--cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecCcchHHHHHHcCCCeee
Confidence            34667764 689888842  2589999999999999999999999999999984 999999998 799999999999998


Q ss_pred             ec
Q 031608          154 IQ  155 (156)
Q Consensus       154 ~~  155 (156)
                      +.
T Consensus        81 t~   82 (111)
T 2pu9_C           81 TF   82 (111)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.69  E-value=1.1e-16  Score=108.09  Aligned_cols=75  Identities=27%  Similarity=0.563  Sum_probs=66.1

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..++ .++|++.+.   ..+++++|.||++||++|+.+.|.++++++++++++.++.+|++++++++++|+|.++|+.
T Consensus         3 v~~l~-~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~   77 (107)
T 1dby_A            3 AGAVN-DDTFKNVVL---ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTI   77 (107)
T ss_dssp             CEEEC-HHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEE
T ss_pred             cEecc-HHHHHHHHh---cCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEE
Confidence            34454 567887664   4689999999999999999999999999999987799999999999999999999999874

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.69  E-value=7.2e-17  Score=111.72  Aligned_cols=75  Identities=20%  Similarity=0.339  Sum_probs=65.6

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..++ .++|++.+.   ..+++++|+|||+||++|+.+.|.++++++.+++++.|+.||++++++++++|+|.++|+.
T Consensus         5 v~~l~-~~~f~~~~~---~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   79 (122)
T 3aps_A            5 SIDLT-PQTFNEKVL---QGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSV   79 (122)
T ss_dssp             SEECC-HHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             hhcCC-HHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceE
Confidence            45565 567755443   5789999999999999999999999999999987799999999999999999999999874

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.69  E-value=4.9e-17  Score=113.26  Aligned_cols=81  Identities=23%  Similarity=0.409  Sum_probs=72.8

Q ss_pred             CCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCC-eEEEEEECCCCHHHHHHhCC
Q 031608           71 RPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK-LKFYYVDVNKVSKDLVKRGN  149 (156)
Q Consensus        71 ~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~-v~~~~vd~d~~~~l~~~~~i  149 (156)
                      .+....+..|++.++|++++    ..+++++|.||++||++|+.+.|.++++++.+++. +.|+.||++++++++++|+|
T Consensus        11 ~~~~~~~~~i~~~~~f~~~l----~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v   86 (121)
T 2j23_A           11 LVPRGSVQVISSYDQFKQVT----GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGI   86 (121)
T ss_dssp             CCCCCCEEECCSHHHHHHHH----SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTC
T ss_pred             ccCCcceEEcCCHHHHHHHH----cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCC
Confidence            34445688999999999999    57999999999999999999999999999988754 99999999999999999999


Q ss_pred             ccceec
Q 031608          150 ISVSIQ  155 (156)
Q Consensus       150 ~sv~~~  155 (156)
                      .++|+.
T Consensus        87 ~~~Pt~   92 (121)
T 2j23_A           87 RAMPTF   92 (121)
T ss_dssp             CSSSEE
T ss_pred             CcccEE
Confidence            999875

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.68  E-value=8.3e-17  Score=113.91  Aligned_cols=75  Identities=19%  Similarity=0.374  Sum_probs=67.0

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCC---eEEEEEECCCCHHHHHHhCCccc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK---LKFYYVDVNKVSKDLVKRGNISV  152 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~---v~~~~vd~d~~~~l~~~~~i~sv  152 (156)
                      .+..++ .++|++++    ..++++||+|||+||++|+.+.|.|+++++++.+.   +.|+.||++++.+++++|+|.++
T Consensus        18 ~v~~l~-~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~   92 (140)
T 2dj1_A           18 GVWVLN-DGNFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGY   92 (140)
T ss_dssp             TEEECC-TTTHHHHH----TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSS
T ss_pred             CCEEcC-hHhHHHHH----hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCcc
Confidence            466664 66899888    46899999999999999999999999999998754   99999999999999999999999


Q ss_pred             eec
Q 031608          153 SIQ  155 (156)
Q Consensus       153 ~~~  155 (156)
                      |+.
T Consensus        93 Pt~   95 (140)
T 2dj1_A           93 PTI   95 (140)
T ss_dssp             SEE
T ss_pred             CeE
Confidence            874

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.68  E-value=1.5e-16  Score=106.86  Aligned_cols=74  Identities=24%  Similarity=0.412  Sum_probs=66.6

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..++ .++|++.+     .+++++|+|||+||++|+.+.|.++++++++++++.++.+|++++++++++|+|.++|+.
T Consensus         4 ~v~~l~-~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~   77 (106)
T 3die_A            4 AIVKVT-DADFDSKV-----ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTL   77 (106)
T ss_dssp             CCEECC-TTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEE
T ss_pred             ceEECC-HHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEE
Confidence            355664 56888887     589999999999999999999999999999987799999999999999999999999874

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.68  E-value=1.2e-16  Score=108.11  Aligned_cols=75  Identities=24%  Similarity=0.498  Sum_probs=66.0

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..++ .++|++.+.   ..+++++|+||++||++|+.+.|.++++++++++++.++.+|++++++++++|+|.++|+.
T Consensus         4 v~~l~-~~~f~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~   78 (108)
T 2trx_A            4 IIHLT-DDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL   78 (108)
T ss_dssp             EEECC-TTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEE
T ss_pred             ceecc-hhhHHHHHH---hcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEE
Confidence            45565 457876653   4789999999999999999999999999999987799999999999999999999999874

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=9.4e-17  Score=113.94  Aligned_cols=77  Identities=18%  Similarity=0.364  Sum_probs=67.0

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCc----
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNI----  150 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~----  150 (156)
                      .+..++ .++|++.+..  ..+++++|+|||+||++|+.+.|.|+++++++.+ ++.|+.||++++++++++|+|.    
T Consensus         8 ~v~~l~-~~~f~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~   84 (137)
T 2dj0_A            8 YIKYFN-DKTIDEELER--DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPL   84 (137)
T ss_dssp             CCEECC-TTHHHHHHHH--STTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSS
T ss_pred             eEEEcc-HhhHHHHHhc--CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCC
Confidence            355565 5689998864  4556999999999999999999999999999975 7999999999999999999998    


Q ss_pred             --cceec
Q 031608          151 --SVSIQ  155 (156)
Q Consensus       151 --sv~~~  155 (156)
                        ++|+.
T Consensus        85 ~~~~Pt~   91 (137)
T 2dj0_A           85 TKQLPTL   91 (137)
T ss_dssp             SSCSSEE
T ss_pred             cCCCCEE
Confidence              88864

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.68  E-value=1.3e-16  Score=108.67  Aligned_cols=75  Identities=29%  Similarity=0.639  Sum_probs=65.2

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..+++ ++|++.+.   ..+++++|+|||+||++|+.+.|.++++++++++++.++.+|++++++++++|+|.++|+.
T Consensus         7 v~~l~~-~~~~~~~~---~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~   81 (112)
T 1t00_A            7 LKHVTD-DSFEQDVL---KNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTL   81 (112)
T ss_dssp             CEEECT-TTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             EEecch-hhHHHHHh---hCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEE
Confidence            455654 46766553   4689999999999999999999999999999977799999999999999999999999874

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=1.3e-16  Score=111.72  Aligned_cols=76  Identities=21%  Similarity=0.391  Sum_probs=66.8

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc----CCeEEEEEECCCCHHHHHHhCCcc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD----TKLKFYYVDVNKVSKDLVKRGNIS  151 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~----~~v~~~~vd~d~~~~l~~~~~i~s  151 (156)
                      .+..++ .++|++.+.   ..++++||+|||+||++|+.+.|.++++++++.    +++.|+.||++++++++++|+|.+
T Consensus         8 ~v~~l~-~~~~~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~   83 (133)
T 1x5d_A            8 DVIELT-DDSFDKNVL---DSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRG   83 (133)
T ss_dssp             SCEECC-TTHHHHHTT---TSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCS
T ss_pred             cCEEcC-HhhHHHHHh---cCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCe
Confidence            456665 458888764   468999999999999999999999999999987    679999999999999999999999


Q ss_pred             ceec
Q 031608          152 VSIQ  155 (156)
Q Consensus       152 v~~~  155 (156)
                      +|+.
T Consensus        84 ~Pt~   87 (133)
T 1x5d_A           84 FPTI   87 (133)
T ss_dssp             SSEE
T ss_pred             eCeE
Confidence            9874

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.68  E-value=5.1e-17  Score=114.34  Aligned_cols=75  Identities=19%  Similarity=0.333  Sum_probs=67.2

Q ss_pred             CChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHH--HHHHHhcCCeEEEEEEC---CCCHHHHHHhCC---ccc
Q 031608           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLE--KLAAEFDTKLKFYYVDV---NKVSKDLVKRGN---ISV  152 (156)
Q Consensus        81 ~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~--~la~~~~~~v~~~~vd~---d~~~~l~~~~~i---~sv  152 (156)
                      .+.+++++.+..+...++++||+|||+||++|+.+.|.|+  ++++.+.+++.++.||+   +++++++++|+|   .++
T Consensus        13 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~   92 (133)
T 3fk8_A           13 DAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGI   92 (133)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCS
T ss_pred             ChHhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCcc
Confidence            4456788888776678999999999999999999999999  99998866799999999   899999999999   998


Q ss_pred             eec
Q 031608          153 SIQ  155 (156)
Q Consensus       153 ~~~  155 (156)
                      |+.
T Consensus        93 Pt~   95 (133)
T 3fk8_A           93 PAV   95 (133)
T ss_dssp             SEE
T ss_pred             ceE
Confidence            875

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.68  E-value=1.8e-16  Score=109.21  Aligned_cols=77  Identities=25%  Similarity=0.447  Sum_probs=66.6

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..+..+++ ++|++.+.   ..+++++|.||++||++|+.+.|.++++++++++++.|+.||++++++++++|+|.++|+
T Consensus        12 ~~v~~l~~-~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt   87 (121)
T 2i1u_A           12 SATIKVTD-ASFATDVL---SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPT   87 (121)
T ss_dssp             CCSEECCT-TTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             ccceecCH-HHHHHHHH---hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCE
Confidence            34566664 46765543   468999999999999999999999999999998779999999999999999999999987


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        88 ~   88 (121)
T 2i1u_A           88 L   88 (121)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.67  E-value=1.4e-16  Score=109.18  Aligned_cols=73  Identities=25%  Similarity=0.404  Sum_probs=65.3

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..++ .++|++.+     .+++++|+|||+||++|+.+.|.++++++++++++.|+.||++++++++++|+|.++|+.
T Consensus         3 v~~l~-~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~   75 (112)
T 2voc_A            3 IVKAT-DQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTL   75 (112)
T ss_dssp             CEECC-TTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEE
T ss_pred             eEEec-HHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEE
Confidence            34555 45788887     489999999999999999999999999999987799999999999999999999999874

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.67  E-value=5.9e-17  Score=113.99  Aligned_cols=75  Identities=21%  Similarity=0.249  Sum_probs=60.7

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+.+|+ .++|.+.+..+ ..+++++|+|||+||++|+.+.|.|++++++|+ ++.|++||+++.   +.+|+|.++|+.
T Consensus         4 ~v~~it-~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d~~---~~~~~v~~~PT~   77 (118)
T 3evi_A            4 ELREIS-GNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVNSC---IQHYHDNCLPTI   77 (118)
T ss_dssp             SCEECC-GGGHHHHTTTC-CTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGGGT---STTCCGGGCSEE
T ss_pred             ceEEeC-HHHHHHHHHhc-CCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HHHCCCCCCCEE
Confidence            356674 56777766420 113499999999999999999999999999997 499999999986   588999999975


Q ss_pred             C
Q 031608          156 I  156 (156)
Q Consensus       156 ~  156 (156)
                      +
T Consensus        78 ~   78 (118)
T 3evi_A           78 F   78 (118)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.67  E-value=2.2e-16  Score=113.30  Aligned_cols=75  Identities=25%  Similarity=0.422  Sum_probs=67.5

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..++ .++|++.+    ..+++++|+|||+||++|+.+.|.|+++++++.+++.|+.||++++++++++|+|.++|+.
T Consensus        39 ~v~~l~-~~~~~~~~----~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~  113 (148)
T 3p2a_A           39 EVINAT-AETLDKLL----QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTI  113 (148)
T ss_dssp             CCEECC-TTTHHHHT----TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CceecC-HHHHHHHH----hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEE
Confidence            345554 56898888    5799999999999999999999999999999987899999999999999999999999874

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.67  E-value=4.3e-16  Score=110.50  Aligned_cols=79  Identities=24%  Similarity=0.438  Sum_probs=67.2

Q ss_pred             ceEecCChhhHHHHHHHhh--------cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHh
Q 031608           76 ELEPINDSDHLDQILLRAQ--------ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR  147 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~--------~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~  147 (156)
                      .+..++ .++|++.+....        ..+++++|+|||+||++|+.+.|.|+++++++++++.|+.||++++++++++|
T Consensus        10 ~v~~l~-~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~   88 (136)
T 2l5l_A           10 KVIHLT-KAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAF   88 (136)
T ss_dssp             SEEEEC-HHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHT
T ss_pred             ceEEec-chHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHc
Confidence            456665 568888773210        14789999999999999999999999999999877999999999999999999


Q ss_pred             CCccceec
Q 031608          148 GNISVSIQ  155 (156)
Q Consensus       148 ~i~sv~~~  155 (156)
                      +|.++|+.
T Consensus        89 ~v~~~Pt~   96 (136)
T 2l5l_A           89 GIRSIPSI   96 (136)
T ss_dssp             TCCSSCEE
T ss_pred             CCCCCCEE
Confidence            99999874

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.67  E-value=1.6e-16  Score=115.82  Aligned_cols=74  Identities=18%  Similarity=0.360  Sum_probs=67.0

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ...++ .++|++.+    ..++++||+|||+||++|+.+.|.|+++++++.+++.|++||++++++++++|+|.++|+.
T Consensus        49 ~~~l~-~~~f~~~~----~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  122 (155)
T 2ppt_A           49 VAGID-PAILARAE----RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAF  122 (155)
T ss_dssp             EEECC-HHHHHHHT----TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEE
T ss_pred             CccCC-HHHHHHHH----hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEE
Confidence            45554 67888888    4789999999999999999999999999999987799999999999999999999999874

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.67  E-value=4.5e-16  Score=108.09  Aligned_cols=76  Identities=26%  Similarity=0.449  Sum_probs=66.4

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC-CCHHHHHHhCCcccee
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGNISVSI  154 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d-~~~~l~~~~~i~sv~~  154 (156)
                      .+..++ .++|++.+..  ..+++++|+|||+||++|+.+.|.++++++++++ +.++.+|++ ++++++++|+|.++|+
T Consensus        19 ~v~~l~-~~~~~~~~~~--~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~~v~~~Pt   94 (124)
T 1faa_A           19 KVTEVN-KDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPT   94 (124)
T ss_dssp             SEEEEC-TTTHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSSSE
T ss_pred             ceEEec-chhHHHHHHh--cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecCcchHHHHHHcCCCeeeE
Confidence            456665 4588888853  3689999999999999999999999999999874 999999998 6899999999999997


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        95 ~   95 (124)
T 1faa_A           95 F   95 (124)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.67  E-value=1.9e-16  Score=112.99  Aligned_cols=76  Identities=14%  Similarity=0.259  Sum_probs=66.9

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..++ .++|++.+.   ..++++||+|||+||++|+.+.|.|+++++.+++++.|+.||++++++++++|+|.++|+.
T Consensus         7 ~v~~l~-~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~   82 (140)
T 3hz4_A            7 SIIEFE-DMTWSQQVE---DSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTF   82 (140)
T ss_dssp             TEEEEC-HHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEE
T ss_pred             ceEEcc-hHhHHHHHH---hCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEE
Confidence            456665 567874443   5699999999999999999999999999999987899999999999999999999999874

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.67  E-value=1.2e-16  Score=122.46  Aligned_cols=76  Identities=24%  Similarity=0.494  Sum_probs=67.1

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ....+ +.++|++.+.   .++++++|+|||+||++|+.+.|.|+++++++++++.|+.||++++++++++|+|.++|+.
T Consensus        13 ~~~~l-t~~~f~~~v~---~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~   88 (222)
T 3dxb_A           13 KIIHL-TDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL   88 (222)
T ss_dssp             CCEEC-CTTTHHHHHT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEE
T ss_pred             CceeC-CHHHHHHHHH---hcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEE
Confidence            34444 5668888653   5799999999999999999999999999999987799999999999999999999999975

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.67  E-value=2.6e-16  Score=107.72  Aligned_cols=73  Identities=25%  Similarity=0.494  Sum_probs=66.2

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ....+.++|++++.    .+++++|+|||+||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++|+.
T Consensus        11 ~~~~~~~~f~~~~~----~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~   83 (112)
T 1syr_A           11 KIVTSQAEFDSIIS----QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTF   83 (112)
T ss_dssp             EEECSHHHHHHHHH----HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             EEECCHHHHHHHHc----cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCCHHHHHHcCCCcccEE
Confidence            34556889999994    58999999999999999999999999999987 499999999999999999999999864

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.66  E-value=3.4e-16  Score=104.95  Aligned_cols=74  Identities=22%  Similarity=0.533  Sum_probs=65.2

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..++ .++|++.+.   ..+++++|.||++||++|+.+.|.++++++++++++.++.+|++++++++++|++.++|+.
T Consensus         3 ~~~~-~~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~   76 (105)
T 1fb6_A            3 QDVN-DSSWKEFVL---ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTV   76 (105)
T ss_dssp             EECC-TTTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             eech-hhhHHHHHh---cCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEE
Confidence            3444 457887664   4689999999999999999999999999999987799999999999999999999999874

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.66  E-value=3.6e-16  Score=105.15  Aligned_cols=74  Identities=26%  Similarity=0.491  Sum_probs=65.8

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..++ .++|++++.    .+++++|.||++||++|+.+.|.++++++.+++++.++.+|++++++++++|++.++|+.
T Consensus         3 v~~l~-~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~   76 (109)
T 2yzu_A            3 PIEVT-DQNFDETLG----QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTV   76 (109)
T ss_dssp             CEECC-TTTHHHHHH----HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ceEcc-HhHHHHHhc----CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEE
Confidence            34554 558887774    589999999999999999999999999999987799999999999999999999999874

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.66  E-value=2.9e-16  Score=106.29  Aligned_cols=74  Identities=19%  Similarity=0.294  Sum_probs=65.2

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc---CCeEEEEEECCCCHHHHHHhCCccc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISV  152 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~---~~v~~~~vd~d~~~~l~~~~~i~sv  152 (156)
                      .+..++ .++|++.+.     +++++|+|||+||++|+.+.|.++++++.+.   .++.++.+|++++++++++|+|.++
T Consensus         6 ~v~~l~-~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   79 (111)
T 3uvt_A            6 TVLALT-ENNFDDTIA-----EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGY   79 (111)
T ss_dssp             CSEECC-TTTHHHHHH-----SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSS
T ss_pred             cceEcC-hhhHHHHhc-----CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcc
Confidence            455564 668999984     7899999999999999999999999998875   3599999999999999999999999


Q ss_pred             eec
Q 031608          153 SIQ  155 (156)
Q Consensus       153 ~~~  155 (156)
                      |+.
T Consensus        80 Pt~   82 (111)
T 3uvt_A           80 PTL   82 (111)
T ss_dssp             SEE
T ss_pred             cEE
Confidence            864

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.66  E-value=3.2e-16  Score=119.89  Aligned_cols=124  Identities=17%  Similarity=0.244  Sum_probs=86.9

Q ss_pred             cCCccCCCCCccccccCCceEEEeCCCccccccccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEE
Q 031608           25 QQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDW  104 (156)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F  104 (156)
                      ...|.+.|+|++.+-+.+...-+.|..........+..... +. ..+....... .+.++|++++.    .+++++|+|
T Consensus        82 ~~~~~v~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~----~~~~~~v~f  154 (241)
T 3idv_A           82 ASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQ-PD-WTPPPEVTLV-LTKENFDEVVN----DADIILVEF  154 (241)
T ss_dssp             HHHTTCCSSSEEEEEETTEEEECCSCSCHHHHHHHHHHHHS-TT-CCCCCCSSEE-CCTTTHHHHHH----HCSEEEEEE
T ss_pred             HHhcCCCcCCEEEEEcCCCcccccCcccHHHHHHHHhhccC-cc-ccccccccee-ccHHHHHHhhc----cCCeEEEEE
Confidence            34578889999987766554434333222222222221111 11 1122222333 45678999984    478999999


Q ss_pred             eCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCccceec
Q 031608          105 MASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus       105 ~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ||+||++|+.+.|.++++++++.+   ++.|+.||++++++++++|+|.++|+.
T Consensus       155 ~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~  208 (241)
T 3idv_A          155 YAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTL  208 (241)
T ss_dssp             ECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEE
Confidence            999999999999999999999864   399999999999999999999999864

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.66  E-value=1.8e-16  Score=110.74  Aligned_cols=75  Identities=12%  Similarity=0.114  Sum_probs=66.8

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHhCCc-
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----DLVKRGNI-  150 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~----l~~~~~i~-  150 (156)
                      .+..|++.++|++++.    .+++++|+|+|+|||+|+.+.|.|++++++ + ++.|++||++++.+    ++.++||. 
T Consensus         7 ~~~~i~s~e~f~~ii~----~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~-~v~~~~vdVde~r~~Sn~IA~~~~V~h   80 (112)
T 3iv4_A            7 VAIKLSSIDQFEQVIE----ENKYVFVLKHSETCPISANAYDQFNKFLYE-R-DMDGYYLIVQQERDLSDYIAKKTNVKH   80 (112)
T ss_dssp             CEEECCSHHHHHHHHH----HCSEEEEEEECTTCHHHHHHHHHHHHHHHH-H-TCCEEEEEGGGGHHHHHHHHHHHTCCC
T ss_pred             ceeecCCHHHHHHHHh----cCCCEEEEEECCcCHhHHHHHHHHHHHhcc-C-CceEEEEEeecCchhhHHHHHHhCCcc
Confidence            5788999999999995    489999999999999999999999999985 3 59999999999866    89999999 


Q ss_pred             cceecC
Q 031608          151 SVSIQI  156 (156)
Q Consensus       151 sv~~~~  156 (156)
                      ..|+.|
T Consensus        81 ~sPq~i   86 (112)
T 3iv4_A           81 ESPQAF   86 (112)
T ss_dssp             CSSEEE
T ss_pred             CCCeEE
Confidence            488653

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.66  E-value=3.9e-16  Score=104.98  Aligned_cols=75  Identities=23%  Similarity=0.414  Sum_probs=65.9

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..++ .++|++.+.   ..+++++|.||++||++|+.+.|.++++++++++++.|+.+|++++++++++|+|.++|+.
T Consensus         4 v~~l~-~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~   78 (107)
T 2i4a_A            4 TLAVS-DSSFDQDVL---KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTL   78 (107)
T ss_dssp             EEECC-TTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEE
T ss_pred             eeecc-hhhhhHHHH---hCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEE
Confidence            45555 457876653   4789999999999999999999999999999987799999999999999999999999864

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.66  E-value=1.7e-16  Score=111.44  Aligned_cols=61  Identities=20%  Similarity=0.373  Sum_probs=57.9

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..+++++|+|||+||++|+.+.|.++++++++++++.++.||++++++++++|+|.++|+.
T Consensus        40 ~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~  100 (128)
T 3ul3_B           40 MKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTI  100 (128)
T ss_dssp             SCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEE
T ss_pred             ccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEE
Confidence            4799999999999999999999999999999987799999999999999999999999875

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.65  E-value=3e-16  Score=109.74  Aligned_cols=79  Identities=14%  Similarity=0.275  Sum_probs=69.4

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCC-------CChhHHhhhHHHHHHHHHhcCCeEEEEEEC-------CCCH
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMAS-------WCRKCIYLKPKLEKLAAEFDTKLKFYYVDV-------NKVS  141 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~-------WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~-------d~~~  141 (156)
                      +.+.+.+.++|++.+..  ..+++++|+|||+       ||++|+.+.|.++++++++++++.|+.||+       +.++
T Consensus         5 ~~v~~~~~~~~~~~~~~--~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~   82 (123)
T 1wou_A            5 EEVSVSGFEEFHRAVEQ--HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNN   82 (123)
T ss_dssp             EEEEEESHHHHHHHHHT--TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTC
T ss_pred             eeEEeccHHHHHHHHHH--hCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhH
Confidence            34566778899999863  2589999999999       999999999999999999977799999999       7899


Q ss_pred             HHHHHhCCccceecC
Q 031608          142 KDLVKRGNISVSIQI  156 (156)
Q Consensus       142 ~l~~~~~i~sv~~~~  156 (156)
                      +++++|+|.++|+.+
T Consensus        83 ~~~~~~~i~~~Pt~~   97 (123)
T 1wou_A           83 DFRKNLKVTAVPTLL   97 (123)
T ss_dssp             HHHHHHCCCSSSEEE
T ss_pred             HHHHHCCCCeeCEEE
Confidence            999999999999753

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=5.8e-16  Score=107.93  Aligned_cols=73  Identities=19%  Similarity=0.321  Sum_probs=63.9

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCcccee
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      .+..++ .++|++++      ++.++|+|||+||++|+.+.|.++++++++++ ++.|+.||++++++++++|+|.++|+
T Consensus         8 ~v~~l~-~~~f~~~~------~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   80 (126)
T 1x5e_A            8 NVRVIT-DENWRELL------EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPT   80 (126)
T ss_dssp             SEEECC-TTTHHHHT------SSEEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             ccEEec-HHHHHHHh------CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCE
Confidence            466664 56898877      23499999999999999999999999999875 69999999999999999999999987


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        81 ~   81 (126)
T 1x5e_A           81 I   81 (126)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.65  E-value=6.5e-16  Score=105.16  Aligned_cols=75  Identities=21%  Similarity=0.441  Sum_probs=66.8

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..++ .++|++.+.   ..+++++|.||++||++|+.+.|.++++++.+++++.|+.+|++++++++++|+|.++|+.
T Consensus         9 v~~l~-~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~   83 (115)
T 1thx_A            9 VITIT-DAEFESEVL---KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPAL   83 (115)
T ss_dssp             EEECC-GGGHHHHTT---TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEE
T ss_pred             eEEee-ccchhhHhh---cCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEE
Confidence            56664 568887763   4789999999999999999999999999999987799999999999999999999999874

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.64  E-value=3.1e-16  Score=110.67  Aligned_cols=75  Identities=23%  Similarity=0.449  Sum_probs=66.3

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..++ .++|++.+.   ..+++++|+|||+||++|+.+.|.++++++++++++.|+.||++++++++++|+|.++|+.
T Consensus        24 v~~l~-~~~f~~~~~---~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~   98 (128)
T 2o8v_B           24 IIHLT-DDSFDTDVL---KADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL   98 (128)
T ss_dssp             SEEEC-TTTHHHHTT---TCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEE
T ss_pred             cEecC-hhhHHHHHH---hcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEE
Confidence            55665 557876653   5789999999999999999999999999999987799999999999999999999999874

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.64  E-value=1.2e-16  Score=111.38  Aligned_cols=80  Identities=24%  Similarity=0.477  Sum_probs=72.2

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..+++.++|++.+..+...+++++|.||++||++|+.+.|.|++++++++ ++.|+.||++++++++++|+|.++|+.
T Consensus        15 ~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt~   93 (130)
T 1wmj_A           15 VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELKEVAEKYNVEAMPTF   93 (130)
T ss_dssp             SSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSGGGHHHHTCCSSCCC
T ss_pred             ceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchHHHHHHcCCCccceE
Confidence            4667777889999998665679999999999999999999999999999987 599999999999999999999999975


Q ss_pred             C
Q 031608          156 I  156 (156)
Q Consensus       156 ~  156 (156)
                      +
T Consensus        94 ~   94 (130)
T 1wmj_A           94 L   94 (130)
T ss_dssp             C
T ss_pred             E
Confidence            3

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.64  E-value=8.2e-16  Score=102.39  Aligned_cols=71  Identities=23%  Similarity=0.515  Sum_probs=64.1

Q ss_pred             ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .++ .++|++.+.    .+++++|.||++||++|+.+.|.++++++.+++ +.++.+|++++++++++|++.++|+.
T Consensus         3 ~l~-~~~~~~~~~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~   73 (104)
T 2e0q_A            3 HLD-SKNFDSFLA----SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPDIAARYGVMSLPTV   73 (104)
T ss_dssp             ECC-TTTHHHHHH----HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSCEE
T ss_pred             ecC-HHHHHHHHh----cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCHHHHHhCCccccCEE
Confidence            344 568988884    589999999999999999999999999999986 99999999999999999999999874

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.63  E-value=8.1e-16  Score=119.08  Aligned_cols=76  Identities=20%  Similarity=0.326  Sum_probs=66.8

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEEC--CCCHHHHHHhCCc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDV--NKVSKDLVKRGNI  150 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~--d~~~~l~~~~~i~  150 (156)
                      .+..++ .++|++.+.   ..+++++|+|||+||++|+.+.|.|+++++++++   ++.|+.||+  +++++++++|+|.
T Consensus        13 ~v~~l~-~~~f~~~i~---~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~   88 (244)
T 3q6o_A           13 PLTLLQ-ADTVRGAVL---GSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIP   88 (244)
T ss_dssp             SSEEEC-TTTHHHHHS---SCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCC
T ss_pred             CceeCC-hhhHHHHHh---hCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCC
Confidence            466666 458888774   4679999999999999999999999999999986   799999999  6799999999999


Q ss_pred             cceec
Q 031608          151 SVSIQ  155 (156)
Q Consensus       151 sv~~~  155 (156)
                      ++|+.
T Consensus        89 ~~Pt~   93 (244)
T 3q6o_A           89 GFPTV   93 (244)
T ss_dssp             SSSEE
T ss_pred             ccCEE
Confidence            99874

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.63  E-value=2.3e-16  Score=108.05  Aligned_cols=72  Identities=15%  Similarity=0.201  Sum_probs=62.9

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..+.+.++| +.+    ..+++++|+|||+||++|+.+.|.++++++.++ ++.|+.+|++++++++++|+|.++|+.
T Consensus         5 ~~~~~~~~f-~~~----~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~   76 (110)
T 2l6c_A            5 RDITTEAGM-AHF----EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPELMKELGFERVPTL   76 (110)
T ss_dssp             SBCGGGCSH-HHH----TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCHHHHHHTTCCSSCEE
T ss_pred             eecCCHHHH-HHH----HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCHHHHHHcCCcccCEE
Confidence            344556678 555    368999999999999999999999999999887 599999999999999999999999874

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.1e-15  Score=122.61  Aligned_cols=77  Identities=17%  Similarity=0.312  Sum_probs=68.1

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC--CCHHHHHHhCCccc
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN--KVSKDLVKRGNISV  152 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d--~~~~l~~~~~i~sv  152 (156)
                      ..+++++ .++|++++.   ..++++||+|||+||++|+.+.|.|+++++++++.+.++.||+|  ++++++++|+|.++
T Consensus        17 ~~vv~lt-~~~f~~~i~---~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~   92 (298)
T 3ed3_A           17 PHISELT-PKSFDKAIH---NTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGF   92 (298)
T ss_dssp             TTCEECC-HHHHHHHHT---SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBS
T ss_pred             CCeEEeC-HHHHHHHHH---hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCcc
Confidence            3466665 679999984   46899999999999999999999999999999877999999998  68999999999999


Q ss_pred             eec
Q 031608          153 SIQ  155 (156)
Q Consensus       153 ~~~  155 (156)
                      |+.
T Consensus        93 Pt~   95 (298)
T 3ed3_A           93 PTL   95 (298)
T ss_dssp             SEE
T ss_pred             ceE
Confidence            864

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.63  E-value=7.9e-16  Score=117.65  Aligned_cols=75  Identities=19%  Similarity=0.367  Sum_probs=67.1

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCC---eEEEEEECCCCHHHHHHhCCccc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK---LKFYYVDVNKVSKDLVKRGNISV  152 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~---v~~~~vd~d~~~~l~~~~~i~sv  152 (156)
                      .+..++ .++|++++    ..+++++|+|||+||++|+.+.|.|+++++++++.   +.++.||++++++++++|+|.++
T Consensus        16 ~v~~l~-~~~~~~~~----~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   90 (241)
T 3idv_A           16 GVLVLN-DANFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGY   90 (241)
T ss_dssp             TEEEEC-TTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSS
T ss_pred             CcEEec-ccCHHHHH----hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcC
Confidence            456665 56899988    56999999999999999999999999999998754   99999999999999999999999


Q ss_pred             eec
Q 031608          153 SIQ  155 (156)
Q Consensus       153 ~~~  155 (156)
                      |+.
T Consensus        91 Pt~   93 (241)
T 3idv_A           91 PTI   93 (241)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            874

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.62  E-value=1.7e-15  Score=115.00  Aligned_cols=75  Identities=17%  Similarity=0.236  Sum_probs=67.5

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..++ .++|+..+.    .++++||+|||+||++|+.+.|.|+++++++++++.|+.||++++++++++|+|.++|+.
T Consensus        98 ~v~~l~-~~~f~~~~~----~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~  172 (210)
T 3apq_A           98 EIITLE-RREFDAAVN----SGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSL  172 (210)
T ss_dssp             TSEECC-HHHHHHHHH----HSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ceEEec-HHHHHHHHc----cCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeE
Confidence            455554 668998884    589999999999999999999999999999987899999999999999999999999875

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.62  E-value=1.1e-15  Score=108.24  Aligned_cols=77  Identities=17%  Similarity=0.345  Sum_probs=67.0

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEEC----CCCHHHHHHhC
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDV----NKVSKDLVKRG  148 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~----d~~~~l~~~~~  148 (156)
                      .+..+.+.++++..+..  ..++++||+|||+||++|+.+.|.+   .++++.+++ +.++.||+    +++.+++++|+
T Consensus        12 ~f~~~~~~~~~~~~l~~--~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~   88 (134)
T 2fwh_A           12 NFTQIKTVDELNQALVE--AKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLN   88 (134)
T ss_dssp             CCEECCSHHHHHHHHHH--HTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTT
T ss_pred             CcEEecCHHHHHHHHHH--hcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcC
Confidence            45667888899988865  3489999999999999999999999   999998875 99999999    45778999999


Q ss_pred             Cccceec
Q 031608          149 NISVSIQ  155 (156)
Q Consensus       149 i~sv~~~  155 (156)
                      |.++|+.
T Consensus        89 v~~~Pt~   95 (134)
T 2fwh_A           89 VLGLPTI   95 (134)
T ss_dssp             CCSSSEE
T ss_pred             CCCCCEE
Confidence            9999864

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=7.4e-16  Score=109.72  Aligned_cols=75  Identities=21%  Similarity=0.206  Sum_probs=63.5

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..+..| +.++|++.+..+ ..++++||+|||+||++|+.+.|.|++++++++ ++.|+.||+++++   ++|+|.++|+
T Consensus        10 g~v~~i-~~~~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~~---~~~~i~~~Pt   83 (135)
T 2dbc_A           10 GELREI-SGNQYVNEVTNA-EKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSCI---EHYHDNCLPT   83 (135)
T ss_dssp             CSCEEC-CHHHHHHHTTTC-CSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSSC---SSCCSSCCSE
T ss_pred             CceEEc-CHHHHHHHHHhc-CCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcCc---ccCCCCCCCE
Confidence            456778 678999888531 234799999999999999999999999999987 5999999999876   6899999987


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        84 ~   84 (135)
T 2dbc_A           84 I   84 (135)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=1e-16  Score=112.45  Aligned_cols=76  Identities=17%  Similarity=0.360  Sum_probs=64.9

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHhCCccce
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSKDLVKRGNISVS  153 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d~~~~l~~~~~i~sv~  153 (156)
                      .+..++ .++|++.+.   ..+++++|+|||+||++|+.+.|.|+++++++.  +++.|+.||+++++.++++|+|.++|
T Consensus         8 ~v~~l~-~~~~~~~~~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P   83 (133)
T 2dj3_A            8 PVKVVV-GKTFDAIVM---DPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFP   83 (133)
T ss_dssp             SSEECC-TTTCCCCCT---CTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSS
T ss_pred             ceEEEc-CCCHHHHhc---cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCC
Confidence            455565 456776663   358999999999999999999999999999997  46999999999999999999999998


Q ss_pred             ec
Q 031608          154 IQ  155 (156)
Q Consensus       154 ~~  155 (156)
                      +.
T Consensus        84 t~   85 (133)
T 2dj3_A           84 TI   85 (133)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.61  E-value=6.4e-16  Score=109.72  Aligned_cols=71  Identities=17%  Similarity=0.213  Sum_probs=62.9

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC---------CCCHHHHHH
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV---------NKVSKDLVK  146 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~---------d~~~~l~~~  146 (156)
                      .+..+ +.++|++.+.     + +++|+|||+||++|+.+.|.+++++++++  +.|+.||+         +++++++++
T Consensus        17 ~v~~l-~~~~~~~~~~-----~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~   87 (135)
T 3emx_A           17 RLIYI-TPEEFRQLLQ-----G-DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNK   87 (135)
T ss_dssp             EEEEC-CHHHHHHHHT-----S-SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ceeec-CHHHHHHHhC-----C-cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHH
Confidence            35566 5679999883     3 99999999999999999999999999886  89999999         888999999


Q ss_pred             hCCccceec
Q 031608          147 RGNISVSIQ  155 (156)
Q Consensus       147 ~~i~sv~~~  155 (156)
                      |+|.++|+.
T Consensus        88 ~~v~~~Pt~   96 (135)
T 3emx_A           88 AGVEGTPTL   96 (135)
T ss_dssp             HTCCSSSEE
T ss_pred             cCCceeCeE
Confidence            999999975

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.60  E-value=6.6e-16  Score=113.34  Aligned_cols=75  Identities=16%  Similarity=0.246  Sum_probs=60.6

Q ss_pred             CChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCCCHHH--------------
Q 031608           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKD--------------  143 (156)
Q Consensus        81 ~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l--------------  143 (156)
                      .+..+|++.+..+...||++||+|||+||++|+.+.+.+   .++.+.+.+++.++.||+++..++              
T Consensus        31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~  110 (172)
T 3f9u_A           31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERT  110 (172)
T ss_dssp             CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEE
T ss_pred             cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhh
Confidence            456688888887778899999999999999999985444   555555544699999999987755              


Q ss_pred             ------------HHHhCCccceec
Q 031608          144 ------------LVKRGNISVSIQ  155 (156)
Q Consensus       144 ------------~~~~~i~sv~~~  155 (156)
                                  +.+|+|.++|+.
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~Pt~  134 (172)
T 3f9u_A          111 LRTVGDKWSYLQRVKFGANAQPFY  134 (172)
T ss_dssp             EEEHHHHHHHHHHHHHSCCCSSEE
T ss_pred             hhhhhhhhhHHHHHHcCCCCcceE
Confidence                        789999999874

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.60  E-value=6.5e-16  Score=105.57  Aligned_cols=75  Identities=19%  Similarity=0.383  Sum_probs=65.7

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc---CCeEEEEEECCCCHHHHHHhCCccc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISV  152 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~---~~v~~~~vd~d~~~~l~~~~~i~sv  152 (156)
                      .+..++ .++|++++.    .+++++|.|||+||++|+.+.|.++++++.+.   .++.++.+|++++++++++|+|.++
T Consensus         8 ~v~~l~-~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~   82 (120)
T 1mek_A            8 HVLVLR-KSNFAEALA----AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY   82 (120)
T ss_dssp             TEEECC-TTTHHHHHH----HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSS
T ss_pred             CcEEec-hhhHHHHHc----cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcc
Confidence            355554 568998884    58999999999999999999999999999886   3599999999999999999999999


Q ss_pred             eec
Q 031608          153 SIQ  155 (156)
Q Consensus       153 ~~~  155 (156)
                      |+.
T Consensus        83 Pt~   85 (120)
T 1mek_A           83 PTI   85 (120)
T ss_dssp             SEE
T ss_pred             cEE
Confidence            864

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.60  E-value=6e-16  Score=114.90  Aligned_cols=60  Identities=15%  Similarity=0.215  Sum_probs=55.1

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhC---Cccceec
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRG---NISVSIQ  155 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~---i~sv~~~  155 (156)
                      ..+++++|+|||+|||||+.+.|.++++++.++ ++.|+.||+|++++++.+|+   +.++|+.
T Consensus        52 ~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~  114 (167)
T 1z6n_A           52 IERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLV  114 (167)
T ss_dssp             CCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEE
T ss_pred             hCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCCCHHHHHHHHHcCCCCcCeE
Confidence            358999999999999999999999999999886 59999999999999999997   9999874

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.59  E-value=2.2e-15  Score=124.02  Aligned_cols=75  Identities=21%  Similarity=0.402  Sum_probs=64.3

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHh------cCCeEEEEEECCCCHHHHHHhCC
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF------DTKLKFYYVDVNKVSKDLVKRGN  149 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~------~~~v~~~~vd~d~~~~l~~~~~i  149 (156)
                      .+..++ .++|++++.    .+++++|+|||+||++|+.+.|.|+++++.+      .+++.|++||++++++++++|+|
T Consensus         6 ~v~~l~-~~~f~~~~~----~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v   80 (382)
T 2r2j_A            6 EITSLD-TENIDEILN----NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRI   80 (382)
T ss_dssp             --CBCC-TTTHHHHHH----HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTC
T ss_pred             ceEECC-HHHHHHHHh----cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCC
Confidence            345554 568999884    5899999999999999999999999999988      33599999999999999999999


Q ss_pred             ccceec
Q 031608          150 ISVSIQ  155 (156)
Q Consensus       150 ~sv~~~  155 (156)
                      .++|+-
T Consensus        81 ~~~Pt~   86 (382)
T 2r2j_A           81 SKYPTL   86 (382)
T ss_dssp             CEESEE
T ss_pred             CcCCEE
Confidence            999863

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.59  E-value=8.4e-16  Score=106.10  Aligned_cols=72  Identities=14%  Similarity=0.094  Sum_probs=57.6

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC------CHHHHHHhCCc
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK------VSKDLVKRGNI  150 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~------~~~l~~~~~i~  150 (156)
                      +..+ +.++|++.+.    ++++++|+|||+||++|+.+.|.+++++++++..+.  .+|++.      .++++++|+|.
T Consensus        14 ~~~~-~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~i~   86 (118)
T 1zma_A           14 LEVT-TVVRAQEALD----KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIY--FINSEEPSQLNDLQAFRSRYGIP   86 (118)
T ss_dssp             SEEC-CHHHHHHHHH----TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCE--EEETTCGGGHHHHHHHHHHHTCC
T ss_pred             hhcC-CHHHHHHHHh----CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEE--EEECCCcCcHHHHHHHHHHcCCC
Confidence            3444 5678888884    689999999999999999999999999998874444  455543      35788999999


Q ss_pred             cceec
Q 031608          151 SVSIQ  155 (156)
Q Consensus       151 sv~~~  155 (156)
                      ++|+.
T Consensus        87 ~~Pt~   91 (118)
T 1zma_A           87 TVPGF   91 (118)
T ss_dssp             SSCEE
T ss_pred             CCCeE
Confidence            99874

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.59  E-value=1.9e-15  Score=105.29  Aligned_cols=61  Identities=20%  Similarity=0.297  Sum_probs=57.0

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEE--CCCCHHHHHHhCCccceec
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD--VNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd--~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..+++++|+|||+||++|+.+.|.++++++++.+++.|+.||  ++++++++++|+|.++|+.
T Consensus        24 ~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~   86 (126)
T 2l57_A           24 KEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTT   86 (126)
T ss_dssp             CSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEE
T ss_pred             hCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEE
Confidence            468999999999999999999999999999997679999999  9999999999999999874

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.58  E-value=3.9e-15  Score=105.72  Aligned_cols=75  Identities=25%  Similarity=0.395  Sum_probs=55.4

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..++ .++|++.+.   ..++ ++|+||++||++|+.+.|.|+++++++++++.|+.||++++++++++|+|.++|+.
T Consensus        34 ~v~~l~-~~~~~~~~~---~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~  108 (140)
T 1v98_A           34 WVVEAD-EKGFAQEVA---GAPL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTL  108 (140)
T ss_dssp             -------------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccCC-HHHHHHHHH---cCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEE
Confidence            345554 557888774   3445 99999999999999999999999999987799999999999999999999999874

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.57  E-value=1e-14  Score=123.58  Aligned_cols=76  Identities=13%  Similarity=0.334  Sum_probs=68.1

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCccce
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVS  153 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~  153 (156)
                      ..+..++ .++|++++    ..+++++|+|||+||++|+.+.|.|+++++.+.+ ++.|++||++++++++++|+|.++|
T Consensus        14 ~~v~~l~-~~~f~~~~----~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P   88 (504)
T 2b5e_A           14 SAVVKLA-TDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFP   88 (504)
T ss_dssp             SSCEECC-TTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCcEECC-HHHHHHHH----hcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCC
Confidence            3466665 56899998    5689999999999999999999999999999987 4999999999999999999999998


Q ss_pred             ec
Q 031608          154 IQ  155 (156)
Q Consensus       154 ~~  155 (156)
                      +-
T Consensus        89 t~   90 (504)
T 2b5e_A           89 SL   90 (504)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.56  E-value=9.1e-16  Score=107.60  Aligned_cols=75  Identities=24%  Similarity=0.498  Sum_probs=59.9

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCCh--------------hHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCR--------------KCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK  142 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~--------------~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~  142 (156)
                      +..++ .++|++.+.   .++++++|+|||+||+              +|+.+.|.++++++++++++.+++||++++++
T Consensus         5 v~~l~-~~~f~~~~~---~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~   80 (123)
T 1oaz_A            5 IIHLT-DDSFDTDVL---KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG   80 (123)
T ss_dssp             CEECC-STTHHHHTT---SCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTT
T ss_pred             cEecC-hhhHHHHHH---hCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHH
Confidence            45554 557876653   5799999999999999              99999999999999998779999999999999


Q ss_pred             HHHHhCCccceec
Q 031608          143 DLVKRGNISVSIQ  155 (156)
Q Consensus       143 l~~~~~i~sv~~~  155 (156)
                      ++++|+|.++|+.
T Consensus        81 l~~~~~v~~~Pt~   93 (123)
T 1oaz_A           81 TAPKYGIRGIPTL   93 (123)
T ss_dssp             TGGGGTCCBSSEE
T ss_pred             HHHHcCCCccCEE
Confidence            9999999999874

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.56  E-value=1.7e-15  Score=104.35  Aligned_cols=73  Identities=22%  Similarity=0.409  Sum_probs=59.9

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-----CeEEEEEECCCCHHHHHHhCCc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-----KLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-----~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      .+..++ .++|++.+.   ..+++++|+|||+||++|+.+.|.|+++++++++     ++.|+.||+++++ +++  +|.
T Consensus         8 ~v~~l~-~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~   80 (121)
T 2djj_A            8 PVTVVV-AKNYNEIVL---DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQ   80 (121)
T ss_dssp             SSEECC-TTTTTTSSS---CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCS
T ss_pred             CeEEec-ccCHHHHhh---cCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccC
Confidence            355565 457777653   4689999999999999999999999999999976     7999999999876 444  888


Q ss_pred             cceec
Q 031608          151 SVSIQ  155 (156)
Q Consensus       151 sv~~~  155 (156)
                      ++|+.
T Consensus        81 ~~Pt~   85 (121)
T 2djj_A           81 GFPTI   85 (121)
T ss_dssp             SSSEE
T ss_pred             cCCeE
Confidence            88764

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.55  E-value=1.3e-14  Score=110.86  Aligned_cols=119  Identities=8%  Similarity=0.043  Sum_probs=80.2

Q ss_pred             ccCCccCCCCCccccccCCce-EEEeCCCccccccccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcE-E
Q 031608           24 FQQPWSSGSSSCLLLQKNSAF-FWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPI-L  101 (156)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~v-l  101 (156)
                      ....|.+.|+|++.+-+.+.. .-|.|..........+......   .    .....+ +.++|+.++    ..++++ +
T Consensus        73 l~~~~~v~~~Ptl~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~---~----~~~~~l-~~~~~~~~~----~~~~~~~~  140 (229)
T 2ywm_A           73 ETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHV---S----QRKPQL-SEKTLELLQ----VVDIPIEI  140 (229)
T ss_dssp             HHHHTTCCBSSEEEEESSSCCCEEEESCCCTTHHHHHHHHHHHH---H----TTCCSC-CHHHHHHHT----TCCSCEEE
T ss_pred             HHHHcCCCcCcEEEEECCCcccceecCCccHHHHHHHHHHHHhc---c----CCccCC-CHHHHHHHH----hcCCCeEE
Confidence            344577888899887654322 3344432222111111110000   0    011223 456788776    345555 8


Q ss_pred             EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus       102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      |+|||+||++|+.+.|.+++++++++ ++.++.||++++++++++|+|.++|+.
T Consensus       141 v~F~a~wC~~C~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~  193 (229)
T 2ywm_A          141 WVFVTTSCGYCPSAAVMAWDFALAND-YITSKVIDASENQDLAEQFQVVGVPKI  193 (229)
T ss_dssp             EEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEEGGGCHHHHHHTTCCSSSEE
T ss_pred             EEEECCCCcchHHHHHHHHHHHHHCC-CeEEEEEECCCCHHHHHHcCCcccCEE
Confidence            89999999999999999999999985 699999999999999999999999874

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.55  E-value=2.3e-15  Score=97.47  Aligned_cols=58  Identities=17%  Similarity=0.310  Sum_probs=54.6

Q ss_pred             CcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        98 k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+++|.||++||++|+.+.|.++++++++++++.++.+|++++++++++||+.++|+.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   60 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTI   60 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEE
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEE
Confidence            5789999999999999999999999999987799999999999999999999999874

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.55  E-value=4.5e-15  Score=116.52  Aligned_cols=78  Identities=13%  Similarity=0.143  Sum_probs=67.8

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..+..|.+.++|.+++..+ ..+++|||+|||+||++|+.+.|.|.+++++|++ +.|++||+++ ++++.+|+|.++|+
T Consensus       112 G~V~ei~s~~~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~-~~l~~~~~I~~~PT  188 (245)
T 1a0r_P          112 GFVYELESGEQFLETIEKE-QKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASN-TGAGDRFSSDVLPT  188 (245)
T ss_dssp             CSEEECCSHHHHHHHHHSS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHH-HCCTTSSCTTTCSE
T ss_pred             CeEEEeCCHHHHHHHHHHh-cCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCc-HHHHHHCCCCCCCE
Confidence            4577887788999998521 2489999999999999999999999999999985 9999999987 77889999999997


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus       189 l  189 (245)
T 1a0r_P          189 L  189 (245)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.55  E-value=2.3e-15  Score=97.50  Aligned_cols=57  Identities=14%  Similarity=0.216  Sum_probs=53.6

Q ss_pred             cEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           99 PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        99 ~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..+|.|||+||++|+.+.|.++++++++++++.++.+|++++++++++||+.++|+.
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   59 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAI   59 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEE
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEE
Confidence            468999999999999999999999999987799999999999999999999999874

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.54  E-value=4e-15  Score=111.22  Aligned_cols=70  Identities=14%  Similarity=0.200  Sum_probs=57.6

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHH-H--HHHHHHhcCCeEEEEEECCCCHHHHHHh--------CCcc
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSKDLVKR--------GNIS  151 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~-l--~~la~~~~~~v~~~~vd~d~~~~l~~~~--------~i~s  151 (156)
                      .+.|+...    ..+|+|||+|||+||++|+.+.|. |  .++++.+.+++.+++||.++.++++..|        |+.+
T Consensus        29 ~ea~~~A~----~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g  104 (173)
T 3ira_A           29 EEAFEKAR----KENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGG  104 (173)
T ss_dssp             HHHHHHHH----HHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHH----HhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCC
Confidence            34555554    569999999999999999999993 3  5677766656999999999999999988        9999


Q ss_pred             ceecC
Q 031608          152 VSIQI  156 (156)
Q Consensus       152 v~~~~  156 (156)
                      +|+.+
T Consensus       105 ~Pt~v  109 (173)
T 3ira_A          105 WPLNI  109 (173)
T ss_dssp             SSEEE
T ss_pred             Cccee
Confidence            98753

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.53  E-value=2.2e-14  Score=120.67  Aligned_cols=74  Identities=18%  Similarity=0.316  Sum_probs=66.1

Q ss_pred             eEecCChhhHHHHHHHhhcCC---CcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccce
Q 031608           77 LEPINDSDHLDQILLRAQELS---QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVS  153 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~---k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~  153 (156)
                      +..++ .++|++++.    .+   ++++|+|||+||++|+.+.|.|+++++.+++.+.|+.||++++++++++|||.++|
T Consensus         3 v~~l~-~~~f~~~i~----~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P   77 (481)
T 3f8u_A            3 VLELT-DDNFESRIS----DTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYP   77 (481)
T ss_dssp             CEEEC-TTTHHHHTT----CCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEES
T ss_pred             eEEec-HHHHHHHHH----hCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCC
Confidence            45554 568999983    45   99999999999999999999999999999877999999999999999999999998


Q ss_pred             ec
Q 031608          154 IQ  155 (156)
Q Consensus       154 ~~  155 (156)
                      +-
T Consensus        78 tl   79 (481)
T 3f8u_A           78 TL   79 (481)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=5.8e-15  Score=103.04  Aligned_cols=73  Identities=18%  Similarity=0.272  Sum_probs=61.3

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECC--CCHHHHHHhCCccceec
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVN--KVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d--~~~~l~~~~~i~sv~~~  155 (156)
                      ..+|++.+..+...++++||+|||+||++|+.+.|.+   +++.+.+..++.++.||++  .+.+++++|+|.++|+.
T Consensus        13 ~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~   90 (130)
T 2kuc_A           13 ELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTL   90 (130)
T ss_dssp             CCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEE
T ss_pred             cCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEE
Confidence            3467777765445689999999999999999999999   7777766556899999998  57899999999999874

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.53  E-value=3.2e-15  Score=108.04  Aligned_cols=73  Identities=10%  Similarity=0.018  Sum_probs=53.8

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCC--ChhHHhhhHHHHHHHHHhcCCeE--EEEEECCCCHHHHHHhCCccc
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFDTKLK--FYYVDVNKVSKDLVKRGNISV  152 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~W--C~~Ck~~~p~l~~la~~~~~~v~--~~~vd~d~~~~l~~~~~i~sv  152 (156)
                      +..+++ ++|++++.    .++.++|.||++|  |++|+.+.|.|++++++| +++.  |++||+|++++++.+|+|.++
T Consensus        19 ~~~l~~-~~f~~~i~----~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~~la~~~~V~~i   92 (142)
T 2es7_A           19 WQPVEA-STVDDWIK----RVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEAIGDRFNVRRF   92 (142)
T ss_dssp             CEECCC-C------------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHHHHHHTTTCCSS
T ss_pred             Cccccc-ccHHHHHH----hCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCHHHHHhcCCCcC
Confidence            455654 68999984    4667899999988  999999999999999999 6788  999999999999999999999


Q ss_pred             eec
Q 031608          153 SIQ  155 (156)
Q Consensus       153 ~~~  155 (156)
                      |+.
T Consensus        93 PT~   95 (142)
T 2es7_A           93 PAT   95 (142)
T ss_dssp             SEE
T ss_pred             CeE
Confidence            975

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.52  E-value=8.9e-15  Score=124.19  Aligned_cols=77  Identities=12%  Similarity=0.081  Sum_probs=66.3

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--------CeEEEEEECCCCHHHHHHh
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--------KLKFYYVDVNKVSKDLVKR  147 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--------~v~~~~vd~d~~~~l~~~~  147 (156)
                      .+..++ .++|++++..  ..++++||+|||+||++|+.+.|.|+++++++.+        .+.|++||++++++++++|
T Consensus        24 ~V~~Lt-~~~F~~~l~~--~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y  100 (470)
T 3qcp_A           24 SVVDLS-GDDFSRVHRV--APLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKY  100 (470)
T ss_dssp             TEEECS-CSCGGGTCTT--GGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHT
T ss_pred             CcEECC-HHHHHHHHHh--CCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHc
Confidence            456665 4588888742  3458999999999999999999999999999862        4999999999999999999


Q ss_pred             CCccceec
Q 031608          148 GNISVSIQ  155 (156)
Q Consensus       148 ~i~sv~~~  155 (156)
                      +|.++|+.
T Consensus       101 ~V~~~PTl  108 (470)
T 3qcp_A          101 DINFVPRL  108 (470)
T ss_dssp             TCCSSCEE
T ss_pred             CCCccCeE
Confidence            99999975

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.52  E-value=2.7e-14  Score=122.64  Aligned_cols=76  Identities=20%  Similarity=0.330  Sum_probs=66.3

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECC--CCHHHHHHhCCc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVN--KVSKDLVKRGNI  150 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d--~~~~l~~~~~i~  150 (156)
                      .+..++ .++|++.+.   ..+++++|+|||+||++|+.+.|.|+++++++.+   ++.|+.||++  ++++++++|+|.
T Consensus        13 ~V~~Lt-~~~f~~~v~---~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~   88 (519)
T 3t58_A           13 PLTLLD-ADSVRPTVL---GSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIA   88 (519)
T ss_dssp             SSEEEC-TTTHHHHHS---SCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCC
T ss_pred             CcEECC-hHHHHHHHH---hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCc
Confidence            466665 558888774   4679999999999999999999999999999976   6999999995  489999999999


Q ss_pred             cceec
Q 031608          151 SVSIQ  155 (156)
Q Consensus       151 sv~~~  155 (156)
                      ++|+.
T Consensus        89 ~~PTl   93 (519)
T 3t58_A           89 GFPTV   93 (519)
T ss_dssp             SBSEE
T ss_pred             ccCEE
Confidence            99874

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.52  E-value=2.6e-14  Score=108.62  Aligned_cols=70  Identities=14%  Similarity=0.123  Sum_probs=61.1

Q ss_pred             ChhhHHHHHHHhhcCCCcE-EEEEeCCCChhHHhhhHHHHHHHHHhc----CCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           82 DSDHLDQILLRAQELSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFD----TKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        82 ~~~~~~~~l~~a~~~~k~v-lV~F~A~WC~~Ck~~~p~l~~la~~~~----~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +.+.++.+.    ..++++ +|+|||+||++|+.+.|.+++++++++    +++.++.||++++++++++|+|.++|+.
T Consensus       122 ~~~~~~~~~----~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~  196 (226)
T 1a8l_A          122 MDETKQAIR----NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKI  196 (226)
T ss_dssp             CHHHHHHHT----TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEE
T ss_pred             CHHHHHHHH----hcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeE
Confidence            455676665    355666 999999999999999999999999987    4799999999999999999999999874

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.26  E-value=1.3e-15  Score=101.67  Aligned_cols=74  Identities=27%  Similarity=0.582  Sum_probs=63.2

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..++ .+++++.+.   ..+++++|.||++||++|+.+.|.++++++++++++.++.+|++++++++++|++.++|+.
T Consensus         4 ~~l~-~~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~   77 (106)
T 2yj7_A            4 IEVT-DENFEQEVL---KSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTL   77 (106)
Confidence            3444 345665443   4689999999999999999999999999999986799999999999999999999998864

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.51  E-value=1.2e-14  Score=111.91  Aligned_cols=78  Identities=15%  Similarity=0.172  Sum_probs=67.8

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..+..|.+.++|.+++... ..+++|||.|||+||++|+.+.|.|+++++.|+ ++.|++||++ +++++.+|+|.++|+
T Consensus        99 g~v~~i~~~~~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~-~~~l~~~~~i~~~PT  175 (217)
T 2trc_P           99 GFVYELETGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS-NTGAGDRFSSDVLPT  175 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH-HHTCSTTSCGGGCSE
T ss_pred             CeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC-cHHHHHHCCCCCCCE
Confidence            4567887788999998631 235899999999999999999999999999997 5999999999 888999999999987


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus       176 l  176 (217)
T 2trc_P          176 L  176 (217)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.51  E-value=4e-14  Score=115.02  Aligned_cols=74  Identities=18%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHH-------HHHHHHHhcC-CeEEEEEECCCCHHHHHHh
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK-------LEKLAAEFDT-KLKFYYVDVNKVSKDLVKR  147 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~-------l~~la~~~~~-~v~~~~vd~d~~~~l~~~~  147 (156)
                      .+..++ .++|++++    .++++++|+|||+||+ |+.++|.       ++++++.+.+ ++.|++||++++++++++|
T Consensus        12 ~v~~l~-~~~f~~~i----~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~   85 (350)
T 1sji_A           12 RVVSLT-EKNFKQVL----KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKL   85 (350)
T ss_dssp             CCEEEC-HHHHHHHH----TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHH
T ss_pred             ccEECC-HHHHHHHH----hhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhc
Confidence            355664 67899998    4689999999999999 9999999       9999999875 5999999999999999999


Q ss_pred             CCccceec
Q 031608          148 GNISVSIQ  155 (156)
Q Consensus       148 ~i~sv~~~  155 (156)
                      +|.++|+-
T Consensus        86 ~v~~~Pt~   93 (350)
T 1sji_A           86 GFDEEGSL   93 (350)
T ss_dssp             TCCSTTEE
T ss_pred             CCCccceE
Confidence            99999863

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.50  E-value=1.6e-14  Score=104.73  Aligned_cols=72  Identities=14%  Similarity=0.248  Sum_probs=60.2

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCCCH-----------HHHHHhC
Q 031608           84 DHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS-----------KDLVKRG  148 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~~~-----------~l~~~~~  148 (156)
                      +++++.+..+...|++++|+|| |+||++|+.+.|.+   .++.+.++.++.++.||+++.+           +++++|+
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~  113 (154)
T 2ju5_A           34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYK  113 (154)
T ss_dssp             ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcC
Confidence            3566666655567999999999 99999999999999   7887666456999999998754           8899999


Q ss_pred             Cccceec
Q 031608          149 NISVSIQ  155 (156)
Q Consensus       149 i~sv~~~  155 (156)
                      |.++|+.
T Consensus       114 v~~~Pt~  120 (154)
T 2ju5_A          114 VTGFPEL  120 (154)
T ss_dssp             CCSSSEE
T ss_pred             CCCCCEE
Confidence            9999874

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.50  E-value=6.8e-14  Score=114.83  Aligned_cols=75  Identities=13%  Similarity=0.045  Sum_probs=63.6

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhh------HHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhC
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLK------PKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRG  148 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~------p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~  148 (156)
                      .+..++ .++|++++.    .+++++|+|||+||+||+...      |.++++++.+.+ ++.|++||+++++++|++|+
T Consensus        14 ~v~~lt-~~~f~~~i~----~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~   88 (367)
T 3us3_A           14 RVINVN-AKNYKNVFK----KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLG   88 (367)
T ss_dssp             CCEECC-TTTHHHHHH----HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHT
T ss_pred             ccEECC-HHHHHHHHh----hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcC
Confidence            355664 668999994    489999999999999974433      789999998875 59999999999999999999


Q ss_pred             Cccceec
Q 031608          149 NISVSIQ  155 (156)
Q Consensus       149 i~sv~~~  155 (156)
                      |.++|+-
T Consensus        89 V~~~PTl   95 (367)
T 3us3_A           89 LTEEDSI   95 (367)
T ss_dssp             CCSTTEE
T ss_pred             CCcCceE
Confidence            9999863

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.24  E-value=2e-15  Score=105.56  Aligned_cols=62  Identities=6%  Similarity=0.135  Sum_probs=55.7

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECC--CCHHHHHHhCCccceecC
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVN--KVSKDLVKRGNISVSIQI  156 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d--~~~~l~~~~~i~sv~~~~  156 (156)
                      ..++++||+|||+||++|+.+.|.+   +++++.+++++.++.||++  ++.+++++|+|.++|+.+
T Consensus        17 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~   83 (130)
T 2lst_A           17 AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFV   83 (130)
Confidence            5789999999999999999999999   9999888767999999994  678999999999998753

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.49  E-value=3.8e-14  Score=103.77  Aligned_cols=84  Identities=13%  Similarity=0.213  Sum_probs=65.9

Q ss_pred             chhccccCCC-CCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEE
Q 031608           60 VRVEALWPDL-SRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVD  136 (156)
Q Consensus        60 ~~~~~~~~~~-~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd  136 (156)
                      ..++..+|++ .+....+  .+... ++         .||++||+|||+||++|+.+.|.|+++++++++  ++.++.|+
T Consensus        22 ~~vG~~~P~f~~l~~~~g--~v~l~-~~---------~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~   89 (165)
T 3s9f_A           22 SGVAKHLGEALKLRKQAD--TADMD-SL---------SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILAS   89 (165)
T ss_dssp             CHHHHHHHHTSCEEETTE--EECSG-GG---------TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEE
T ss_pred             hhhcccCCcceeeecCCC--cccHH-Hc---------CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            3456666666 4544332  44433 33         589999999999999999999999999999975  69999999


Q ss_pred             CCCC------------------------HHHHHHhCCccceec
Q 031608          137 VNKV------------------------SKDLVKRGNISVSIQ  155 (156)
Q Consensus       137 ~d~~------------------------~~l~~~~~i~sv~~~  155 (156)
                      +|+.                        .++++.|+|.++|+.
T Consensus        90 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~  132 (165)
T 3s9f_A           90 WDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTL  132 (165)
T ss_dssp             CCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEE
T ss_pred             cCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCCCCCEE
Confidence            9877                        678889999888864

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.48  E-value=1.9e-14  Score=105.29  Aligned_cols=77  Identities=16%  Similarity=0.174  Sum_probs=57.4

Q ss_pred             ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHH--HhcCCeEEEEEECC-CCHHHHHHhCCccceec
Q 031608           79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAA--EFDTKLKFYYVDVN-KVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~--~~~~~v~~~~vd~d-~~~~l~~~~~i~sv~~~  155 (156)
                      .|....++++.+..|...+++|||+|||+||++|+.+.|.+.+..+  ++.+ ..|+.||+| +..+++.++++.++|+.
T Consensus        26 ~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~-~~fv~V~vD~e~~~~~~~~~v~~~PT~  104 (151)
T 3ph9_A           26 DITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ-NKFIMLNLMHETTDKNLSPDGQYVPRI  104 (151)
T ss_dssp             TSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH-HTCEEEEESSCCSCGGGCTTCCCSSEE
T ss_pred             CCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh-cCeEEEEecCCchhhHhhcCCCCCCEE
Confidence            3555567888887777789999999999999999999999976422  2211 245566664 45567888999999875


Q ss_pred             C
Q 031608          156 I  156 (156)
Q Consensus       156 ~  156 (156)
                      +
T Consensus       105 ~  105 (151)
T 3ph9_A          105 M  105 (151)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.48  E-value=3.3e-14  Score=100.84  Aligned_cols=72  Identities=11%  Similarity=0.109  Sum_probs=64.2

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcc--ceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--VSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~s--v~~~  155 (156)
                      .++ +.++|++++    ..+.+++|+|||+ |++|+.+.|.|++++++|.+++.|++||++++++++..|||.+  +|+-
T Consensus         9 ~~~-t~~~f~~~~----~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl   82 (133)
T 2djk_A            9 GEI-GPETYSDYM----SAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             EEC-CHHHHHHHH----HTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             ecc-ChHHHHHHh----cCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEE
Confidence            445 466898887    4688999999999 8999999999999999998889999999999999999999999  8753

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.48  E-value=1.8e-13  Score=96.72  Aligned_cols=82  Identities=15%  Similarity=0.275  Sum_probs=63.0

Q ss_pred             hccccCCC-CCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc--CCeEEEEEECC
Q 031608           62 VEALWPDL-SRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVN  138 (156)
Q Consensus        62 ~~~~~~~~-~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d  138 (156)
                      .+..+|++ .+....+  .+... ++         .|+++||+|||+||++|+.+.|.+.+++++++  .++.++.|++|
T Consensus         4 ~g~~~p~~~~l~~~~g--~~~l~-~~---------~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d   71 (144)
T 1o73_A            4 LAKYLPGATNLLSKSG--EVSLG-SL---------VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWD   71 (144)
T ss_dssp             GGGTSCTTCCBBCTTS--CBCSG-GG---------TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC
T ss_pred             hhhhCccceEeecCCC--cCcHH-Hh---------CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCC
Confidence            34556665 5555433  44433 22         58999999999999999999999999999997  46999999998


Q ss_pred             CC------------------------HHHHHHhCCccceec
Q 031608          139 KV------------------------SKDLVKRGNISVSIQ  155 (156)
Q Consensus       139 ~~------------------------~~l~~~~~i~sv~~~  155 (156)
                      ..                        .+++++|+|.++|+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~  112 (144)
T 1o73_A           72 ENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTL  112 (144)
T ss_dssp             SSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEE
T ss_pred             CCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCCCCCEE
Confidence            64                        367888999888763

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.48  E-value=7.3e-15  Score=101.10  Aligned_cols=54  Identities=20%  Similarity=0.250  Sum_probs=46.5

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC------CCHHHHHHhCCccceec
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN------KVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d------~~~~l~~~~~i~sv~~~  155 (156)
                      .+++++|+|||+||++|+.++|.|++++++++      .||++      ++++++++|+|.++|+.
T Consensus        11 ~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~V~~~PT~   70 (106)
T 3kp8_A           11 LRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTW   70 (106)
T ss_dssp             HHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTTCCSSSEE
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcCCeEeCEE
Confidence            47888999999999999999999999987664      34554      68899999999999974

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.48  E-value=1.3e-13  Score=122.40  Aligned_cols=118  Identities=14%  Similarity=0.149  Sum_probs=83.8

Q ss_pred             CCccCCCCCccccccCCc-----eEEEeCCCccccccccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcE
Q 031608           26 QPWSSGSSSCLLLQKNSA-----FFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPI  100 (156)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~v  100 (156)
                      ..+.+.|+|++.+-+...     ...|.|..      +.......|.....++  .+..++ .++|++.+.   ..++++
T Consensus       611 ~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~------~~~~~l~~fi~~~~~~--~v~~l~-~~~~~~~~~---~~~~~v  678 (780)
T 3apo_A          611 TQENVQRYPEIRFYPQKSSKAYQYHSYNGWN------RDAYSLRSWGLGFLPQ--ASIDLT-PQTFNEKVL---QGKTHW  678 (780)
T ss_dssp             HHTTCCSSSEEEEECCCSSSCCSCEECCCSC------CSHHHHHHHHHTTSCC--CSEEEC-HHHHHHHTT---TCSSCE
T ss_pred             HHcCCCCCCeEEEEcCCCcCccchhhcCCCC------CCHHHHHHHHhhhccc--ccccCC-HHHHHHHHh---cCCCeE
Confidence            346777888887644422     23344311      1222222222222232  245554 567876553   468999


Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +|+|||+||++|+.+.|.++++++++.+++.|+.||++++++++++|+|.++|+.
T Consensus       679 ~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~  733 (780)
T 3apo_A          679 VVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSV  733 (780)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEE
Confidence            9999999999999999999999999977899999999999999999999999874

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.47  E-value=1e-13  Score=99.22  Aligned_cols=84  Identities=15%  Similarity=0.193  Sum_probs=65.0

Q ss_pred             hhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031608           61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK  139 (156)
Q Consensus        61 ~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~  139 (156)
                      .++...|++.+++.. ...+... ++         .|++++|+|||+||++|+.+.|.+.++++++++ ++.++.|++++
T Consensus         4 ~~g~~~p~f~l~~~~-G~~~~l~-~~---------~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~   72 (152)
T 2lrn_A            4 ATGSVAPAITGIDLK-GNSVSLN-DF---------KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDR   72 (152)
T ss_dssp             CTTEECCCCEEECSS-SCEEESG-GG---------TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCS
T ss_pred             cCCCcCCCceeEcCC-CCEEeHH-Hc---------CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccC
Confidence            455666777665532 2333322 22         589999999999999999999999999999976 49999999987


Q ss_pred             -------------------------CHHHHHHhCCccceec
Q 031608          140 -------------------------VSKDLVKRGNISVSIQ  155 (156)
Q Consensus       140 -------------------------~~~l~~~~~i~sv~~~  155 (156)
                                               +.++++.|+|.++|..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~  113 (152)
T 2lrn_A           73 REEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHI  113 (152)
T ss_dssp             CHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSCEE
T ss_pred             CHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCCcCCeE
Confidence                                     4678889999888763

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.46  E-value=7.5e-14  Score=98.49  Aligned_cols=85  Identities=11%  Similarity=0.102  Sum_probs=67.5

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      +.++..+|++.+.+. ....+... ++         .|+++||+||++||++|+.+.|.+.++++++++ ++.++.|+++
T Consensus         5 ~~~G~~~p~~~l~~~-~g~~~~l~-~~---------~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d   73 (148)
T 3hcz_A            5 LLLGKKAPNLYMTDT-TGTYRYLY-DV---------QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIE   73 (148)
T ss_dssp             CCTTSBCCCCCCBCT-TSCBCCGG-GC---------CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             cCCCCcCCceEEecC-CCCEEEhH-Hc---------CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEec
Confidence            456777788877664 22333322 22         589999999999999999999999999999976 4999999999


Q ss_pred             CCHH-------------------------HHHHhCCccceec
Q 031608          139 KVSK-------------------------DLVKRGNISVSIQ  155 (156)
Q Consensus       139 ~~~~-------------------------l~~~~~i~sv~~~  155 (156)
                      +.++                         +++.|++.++|..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~  115 (148)
T 3hcz_A           74 RKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVL  115 (148)
T ss_dssp             SSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEE
T ss_pred             CCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCcCCCCEE
Confidence            8777                         8888998888753

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.46  E-value=1.7e-13  Score=97.12  Aligned_cols=71  Identities=13%  Similarity=0.159  Sum_probs=54.0

Q ss_pred             cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV  137 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~  137 (156)
                      .+.++..+|++.+ +. ....+... ++         .||++||+|||+||++|+.+.|.+.+++++|++ ++.++.|++
T Consensus         6 ~l~~G~~~P~f~l-~~-~g~~~~l~-~~---------~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~   73 (143)
T 4fo5_A            6 GVNPGDLAPRIEF-LG-NDAKASFH-NQ---------LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISM   73 (143)
T ss_dssp             SSSTTSBCCCCCC-------CCCSC-CS---------SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEEC
T ss_pred             ccCCcccCCceEE-cC-CCCEEEHH-Hh---------CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEc
Confidence            4566778888887 43 33344333 22         589999999999999999999999999999974 599999999


Q ss_pred             CCCH
Q 031608          138 NKVS  141 (156)
Q Consensus       138 d~~~  141 (156)
                      |..+
T Consensus        74 d~~~   77 (143)
T 4fo5_A           74 DEKE   77 (143)
T ss_dssp             CSCH
T ss_pred             cCCH
Confidence            8644

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.46  E-value=6.6e-15  Score=108.18  Aligned_cols=61  Identities=18%  Similarity=0.287  Sum_probs=51.2

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH-HHHHhCC--ccceec
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK-DLVKRGN--ISVSIQ  155 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~-l~~~~~i--~sv~~~  155 (156)
                      ..++++||+|||+||++|+.+.|.|+++++.+..++.|+.||++++++ ++..+++  .++|+.
T Consensus        44 ~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~  107 (164)
T 1sen_A           44 ASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRI  107 (164)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEE
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeE
Confidence            569999999999999999999999999877665457888899887776 7788888  667764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.46  E-value=1.1e-13  Score=88.13  Aligned_cols=53  Identities=13%  Similarity=0.263  Sum_probs=48.7

Q ss_pred             EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus       100 vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..|+|||+||++|+.+.|.++++++++++++.++.+|   +++++++|||.++|+.
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~   54 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGL   54 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCE
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEE
Confidence            4689999999999999999999999998779999998   8899999999999875

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.45  E-value=1.2e-13  Score=97.39  Aligned_cols=87  Identities=17%  Similarity=0.319  Sum_probs=65.9

Q ss_pred             cchhccccCCCCCCCccceEecCCh-hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHh-cC-CeEEEEE
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDS-DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DT-KLKFYYV  135 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~-~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~-~~-~v~~~~v  135 (156)
                      .+.++..+|++...+.. ...+... +++         .|+++||+||++||++|+.+.|.+.++++++ .+ ++.++.|
T Consensus         4 ~~~~g~~~p~~~l~~~~-g~~~~l~~~~~---------~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v   73 (148)
T 3fkf_A            4 KVTVGKSAPYFSLPNEK-GEKLSRSAERF---------RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGI   73 (148)
T ss_dssp             -CCTTSBCCCCCEEBTT-SCEECTTSTTT---------TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEE
T ss_pred             cccCCCcCCCeEeeCCC-CCEEecccccc---------CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEE
Confidence            35567777777766542 2233222 022         5899999999999999999999999999999 65 4999999


Q ss_pred             ECCCCH-------------------------HHHHHhCCccceec
Q 031608          136 DVNKVS-------------------------KDLVKRGNISVSIQ  155 (156)
Q Consensus       136 d~d~~~-------------------------~l~~~~~i~sv~~~  155 (156)
                      +++..+                         ++++.|++.++|+.
T Consensus        74 ~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~  118 (148)
T 3fkf_A           74 SLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTN  118 (148)
T ss_dssp             ECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEE
T ss_pred             ECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCcCEE
Confidence            998744                         78889999888763

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.45  E-value=1.5e-13  Score=97.72  Aligned_cols=60  Identities=15%  Similarity=0.267  Sum_probs=52.9

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc--CCeEEEEEECCCC------------------------HHHHHHhCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKV------------------------SKDLVKRGN  149 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d~~------------------------~~l~~~~~i  149 (156)
                      .|+++||+|||+||++|+.+.|.+++++++++  .++.++.|++|+.                        .+++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            58999999999999999999999999999997  3699999999864                        467888999


Q ss_pred             ccceec
Q 031608          150 ISVSIQ  155 (156)
Q Consensus       150 ~sv~~~  155 (156)
                      .++|+.
T Consensus       107 ~~~Pt~  112 (146)
T 1o8x_A          107 ESIPTL  112 (146)
T ss_dssp             CSSSEE
T ss_pred             CCCCEE
Confidence            888753

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.45  E-value=1.3e-13  Score=115.92  Aligned_cols=74  Identities=18%  Similarity=0.388  Sum_probs=64.3

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHhCCcccee
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      +..+. .++|++++.   ..+++++|+|||+||++|+.+.|.++++++.+.+  ++.++++|++.+ +++.+|+|.++|+
T Consensus       354 v~~~~-~~~~~~~~~---~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt  428 (481)
T 3f8u_A          354 VKVVV-AENFDEIVN---NENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPT  428 (481)
T ss_dssp             SEEEC-TTTHHHHHT---CTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSE
T ss_pred             eEEec-ccCHHHHhh---cCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCE
Confidence            44444 568988884   4589999999999999999999999999999976  699999999988 8889999999986


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      -
T Consensus       429 ~  429 (481)
T 3f8u_A          429 I  429 (481)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.44  E-value=2.6e-13  Score=105.69  Aligned_cols=60  Identities=17%  Similarity=0.042  Sum_probs=55.0

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc----CCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD----TKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~----~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+++++++|||+||++|+.+.|.+++++..+.    +++.+..||++++++++++|+|.++|+-
T Consensus       137 ~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~  200 (243)
T 2hls_A          137 KGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSI  200 (243)
T ss_dssp             CSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeE
Confidence            57788999999999999999999999999882    4699999999999999999999999974

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.44  E-value=1.7e-13  Score=96.53  Aligned_cols=60  Identities=17%  Similarity=0.234  Sum_probs=53.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC---------------------------CCCHHHHHHhC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV---------------------------NKVSKDLVKRG  148 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~---------------------------d~~~~l~~~~~  148 (156)
                      .|++++|.||++||++|+.+.|.++++++++++++.|+.|++                           +.+.++++.|+
T Consensus        28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  107 (148)
T 2b5x_A           28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE  107 (148)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred             CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhC
Confidence            589999999999999999999999999999986699999995                           44568899999


Q ss_pred             Cccceec
Q 031608          149 NISVSIQ  155 (156)
Q Consensus       149 i~sv~~~  155 (156)
                      +.++|+.
T Consensus       108 v~~~P~~  114 (148)
T 2b5x_A          108 NEYVPAY  114 (148)
T ss_dssp             CCCSSEE
T ss_pred             CCCCCEE
Confidence            9988764

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.44  E-value=1.8e-13  Score=96.89  Aligned_cols=73  Identities=11%  Similarity=0.048  Sum_probs=54.8

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHH---HHHHhcC-CeEEEEE
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEK---LAAEFDT-KLKFYYV  135 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~---la~~~~~-~v~~~~v  135 (156)
                      ..++..+|++.++...+ ..+... ++         .|+++||+|||+||++|+.+.|.+.+   +++++.+ ++.++.|
T Consensus         5 ~~~G~~ap~f~l~~~~g-~~~~l~-~~---------~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i   73 (142)
T 3eur_A            5 NRLGTKALNFTYTLDSG-VKGTLY-QF---------PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSI   73 (142)
T ss_dssp             TCTTSBCCCCEEEETTS-CEEETT-TC---------CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEE
T ss_pred             hcCCCccCCcEEEcCCC-CEeeHH-Hc---------CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEE
Confidence            35566777776655322 222212 22         58999999999999999999999999   9998854 6999999


Q ss_pred             ECCCCHHH
Q 031608          136 DVNKVSKD  143 (156)
Q Consensus       136 d~d~~~~l  143 (156)
                      +.++..+.
T Consensus        74 ~~d~~~~~   81 (142)
T 3eur_A           74 YPDEELDE   81 (142)
T ss_dssp             ECSSCHHH
T ss_pred             EcCCCHHH
Confidence            99887554

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.43  E-value=1.8e-13  Score=121.45  Aligned_cols=75  Identities=15%  Similarity=0.161  Sum_probs=60.2

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+..+ +.++|++++    .++++++|+|||+||++|+.+.|.|+++++++.+.+.|++||++++++++++|+|.++|+-
T Consensus       117 ~v~~l-~~~~f~~~i----~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~  191 (780)
T 3apo_A          117 EIITL-ERREFDAAV----NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSL  191 (780)
T ss_dssp             TEEEC-CHHHHHHHH----TSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEE
T ss_pred             ceeee-chHhHHhhh----cCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeE
Confidence            45555 577999999    5799999999999999999999999999999987799999999999999999999999863

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.43  E-value=3.8e-13  Score=95.26  Aligned_cols=60  Identities=12%  Similarity=0.205  Sum_probs=53.0

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc--CCeEEEEEECCCC------------------------HHHHHHhCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKV------------------------SKDLVKRGN  149 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d~~------------------------~~l~~~~~i  149 (156)
                      .|+++||+|||+||++|+.+.|.+++++++++  .++.++.|++++.                        .+++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence            58999999999999999999999999999997  3799999999864                        467888999


Q ss_pred             ccceec
Q 031608          150 ISVSIQ  155 (156)
Q Consensus       150 ~sv~~~  155 (156)
                      .++|..
T Consensus       107 ~~~P~~  112 (144)
T 1i5g_A          107 KSIPTL  112 (144)
T ss_dssp             CSSSEE
T ss_pred             CCCCEE
Confidence            888753

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.42  E-value=3.9e-13  Score=96.80  Aligned_cols=82  Identities=12%  Similarity=0.079  Sum_probs=61.9

Q ss_pred             hccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC
Q 031608           62 VEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV  140 (156)
Q Consensus        62 ~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~  140 (156)
                      .+..+|++.+++.. ...+... ++         .|+++||+|||+||++|+.+.|.+.++++++++ ++.++.|++|..
T Consensus        11 ~g~~~p~f~l~~~~-G~~~~l~-~~---------~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~   79 (152)
T 2lrt_A           11 KEASIIDIQLKDLK-GNTRSLT-DL---------KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGD   79 (152)
T ss_dssp             CTTCSCCCCEEBTT-SCEECTT-TG---------GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCC
T ss_pred             cCCCCCCeEEEcCC-CCEEeHH-Hh---------CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCC
Confidence            34556666665432 2333322 22         489999999999999999999999999999976 499999999987


Q ss_pred             HH-----------------------HHHHhCCcccee
Q 031608          141 SK-----------------------DLVKRGNISVSI  154 (156)
Q Consensus       141 ~~-----------------------l~~~~~i~sv~~  154 (156)
                      .+                       +++.|++.++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~  116 (152)
T 2lrt_A           80 EHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPS  116 (152)
T ss_dssp             HHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSCSE
T ss_pred             HHHHHHHHhCCCceEEECCCCcchHHHHHcCcccCce
Confidence            65                       667777777664

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.42  E-value=1.4e-13  Score=97.02  Aligned_cols=71  Identities=11%  Similarity=0.137  Sum_probs=53.5

Q ss_pred             hccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHH---HHHHhcC-CeEEEEEEC
Q 031608           62 VEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEK---LAAEFDT-KLKFYYVDV  137 (156)
Q Consensus        62 ~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~---la~~~~~-~v~~~~vd~  137 (156)
                      +|..+|++.++... ...+... ++         .|+++||+|||+||++|+.+.|.+.+   +.+++++ ++.++.|++
T Consensus         3 ~G~~~p~f~l~~~~-g~~~~l~-~~---------~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~   71 (142)
T 3ewl_A            3 AGMKAADFTYVTVH-GDNSRMS-RL---------KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYP   71 (142)
T ss_dssp             TTSBCCCCEEECTT-CCEEEGG-GC---------CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEEC
T ss_pred             CCCcCCCCEEECCC-CCEEEhh-hc---------CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEe
Confidence            45666777666542 2233222 22         58999999999999999999999988   8888864 599999999


Q ss_pred             CCCHHH
Q 031608          138 NKVSKD  143 (156)
Q Consensus       138 d~~~~l  143 (156)
                      |+.++.
T Consensus        72 d~~~~~   77 (142)
T 3ewl_A           72 DENREE   77 (142)
T ss_dssp             SSCHHH
T ss_pred             cCCHHH
Confidence            977665

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.41  E-value=6.7e-13  Score=95.64  Aligned_cols=86  Identities=26%  Similarity=0.374  Sum_probs=67.5

Q ss_pred             ccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc-CCeEEEEEE
Q 031608           58 RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVD  136 (156)
Q Consensus        58 r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~-~~v~~~~vd  136 (156)
                      ..+.++...|++..+... ...+... ++         .|+++||+||++||++|+.+.|.+.+++++++ .++.++.|+
T Consensus        13 ~~~~~G~~~p~f~l~~~~-g~~~~l~-~~---------~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~   81 (158)
T 3hdc_A           13 PLVRTGALAPNFKLPTLS-GENKSLA-QY---------RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVN   81 (158)
T ss_dssp             CCCCTTSBCCCCEEECTT-SCEEESG-GG---------TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred             cccCCCCcCCCceeEcCC-CCEEehH-Hh---------CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEe
Confidence            345566777777665542 2333222 22         58999999999999999999999999999997 469999999


Q ss_pred             CCC-------------------CHHHHHHhCCcccee
Q 031608          137 VNK-------------------VSKDLVKRGNISVSI  154 (156)
Q Consensus       137 ~d~-------------------~~~l~~~~~i~sv~~  154 (156)
                      .+.                   ..++++.|++.++|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  118 (158)
T 3hdc_A           82 VEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPD  118 (158)
T ss_dssp             CSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcce
Confidence            987                   678999999998886

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.40  E-value=7.3e-13  Score=94.52  Aligned_cols=86  Identities=15%  Similarity=0.220  Sum_probs=66.2

Q ss_pred             cchhccccCCCCCCCccceEecCCh-hhHHHHHHHhhcCCCcEEEEEeCCCChh--HHhhhHHHHHHHHHh-cC-CeEEE
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDS-DHLDQILLRAQELSQPILIDWMASWCRK--CIYLKPKLEKLAAEF-DT-KLKFY  133 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~-~~~~~~l~~a~~~~k~vlV~F~A~WC~~--Ck~~~p~l~~la~~~-~~-~v~~~  133 (156)
                      .+.++..+|++.++... ...+... +++         .|+++||+|||+||++  |+.+.|.+.+++++| .+ ++.++
T Consensus         4 ~l~~G~~~p~f~l~~~~-g~~~~l~~~~~---------~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v   73 (150)
T 3fw2_A            4 KSEIGKYAPFFSLPNAK-GEKITRSSDAF---------KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGML   73 (150)
T ss_dssp             TTSTTSBCCCCCEEBTT-CCEECTTSTTT---------TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEE
T ss_pred             cccCCCcCCccEeECCC-CCEEecchhhh---------CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEE
Confidence            35667778888776642 2333322 022         5899999999999999  999999999999999 55 49999


Q ss_pred             EEECCCCH-------------------------HHHHHhCCcccee
Q 031608          134 YVDVNKVS-------------------------KDLVKRGNISVSI  154 (156)
Q Consensus       134 ~vd~d~~~-------------------------~l~~~~~i~sv~~  154 (156)
                      .|++|+.+                         ++++.|++.++|.
T Consensus        74 ~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~  119 (150)
T 3fw2_A           74 GISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPA  119 (150)
T ss_dssp             EEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSE
T ss_pred             EEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCe
Confidence            99998765                         6777888887765

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.40  E-value=3.3e-13  Score=109.49  Aligned_cols=73  Identities=14%  Similarity=0.380  Sum_probs=62.6

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHhCCcccee
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      +..++ .++|++++.   ..+++++|+|||+||++|+.+.|.|+++++.+++  ++.++.+|++.+.  +.+|+|.++|+
T Consensus       251 v~~l~-~~~f~~~~~---~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt  324 (361)
T 3uem_A          251 VKVLV-GKNFEDVAF---DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPT  324 (361)
T ss_dssp             SEEEC-TTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSE
T ss_pred             cEEee-cCchhhhcc---cCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCe
Confidence            45554 558888874   4689999999999999999999999999999976  4999999998877  67899999886


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      -
T Consensus       325 ~  325 (361)
T 3uem_A          325 L  325 (361)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.40  E-value=7.1e-13  Score=92.14  Aligned_cols=59  Identities=15%  Similarity=0.213  Sum_probs=53.8

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC----------------------CHHHHHHhCCccce
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK----------------------VSKDLVKRGNISVS  153 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~----------------------~~~l~~~~~i~sv~  153 (156)
                      .|++++|.||++||++|+.+.|.+++++++++ ++.++.|++++                      +.+++++|++.++|
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  101 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQP  101 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSS
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCC
Confidence            58999999999999999999999999999998 79999999987                      67888899998887


Q ss_pred             ec
Q 031608          154 IQ  155 (156)
Q Consensus       154 ~~  155 (156)
                      +.
T Consensus       102 ~~  103 (136)
T 1lu4_A          102 AF  103 (136)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.40  E-value=7.2e-13  Score=95.29  Aligned_cols=52  Identities=15%  Similarity=0.454  Sum_probs=47.9

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHh
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKR  147 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~  147 (156)
                      .|+++||+||++||++|+.+.|.+.++++++++ ++.++.|++++.++.+++|
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~   85 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNY   85 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH
Confidence            589999999999999999999999999999986 4999999999988777777

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.40  E-value=3.8e-13  Score=96.38  Aligned_cols=43  Identities=21%  Similarity=0.356  Sum_probs=39.4

Q ss_pred             CCCcEEEEEeCCCChhHHhh-hHHHHHHHHHhcC-CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYL-KPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~-~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .||++||+|||+||++|+.+ .|.+.+++++|++ ++.|+.|+++
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~   71 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTV   71 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECC
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEec
Confidence            58999999999999999996 9999999999984 6999999964

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.39  E-value=9.2e-13  Score=103.54  Aligned_cols=71  Identities=6%  Similarity=-0.033  Sum_probs=61.7

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEe--CCCChhHHhhhHHHHHHHHHhc---CCeEEEEEECCC-----CHHHHH
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWM--ASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNK-----VSKDLV  145 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~--A~WC~~Ck~~~p~l~~la~~~~---~~v~~~~vd~d~-----~~~l~~  145 (156)
                      .++.++ .++|++++    ..++++||+||  ||||+    +.|.|+++++++.   +++.|++||+++     +++++.
T Consensus        17 ~v~~Lt-~~nF~~vi----~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~   87 (248)
T 2c0g_A           17 GCVDLD-ELSFEKTV----ERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGD   87 (248)
T ss_dssp             TCEECC-TTTHHHHH----TTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHH
T ss_pred             CcEECC-HHHHHHHH----hcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHH
Confidence            345554 56899987    46899999999  99999    9999999999983   469999999998     899999


Q ss_pred             HhCCc--cceec
Q 031608          146 KRGNI--SVSIQ  155 (156)
Q Consensus       146 ~~~i~--sv~~~  155 (156)
                      +|+|.  ++|+.
T Consensus        88 ~~~V~~~~~PTl   99 (248)
T 2c0g_A           88 RYKVDDKNFPSI   99 (248)
T ss_dssp             HTTCCTTSCCEE
T ss_pred             HhCCCcCCCCeE
Confidence            99999  99874

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.39  E-value=6.3e-13  Score=94.50  Aligned_cols=59  Identities=17%  Similarity=0.389  Sum_probs=52.7

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCH----------------------HHHHHhCCccc
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS----------------------KDLVKRGNISV  152 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~----------------------~l~~~~~i~sv  152 (156)
                      .|+++||.||++||++|+.+.|.+.++++++++ ++.++.|+++..+                      ++++.|++.++
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            589999999999999999999999999999976 4999999998766                      67778898888


Q ss_pred             ee
Q 031608          153 SI  154 (156)
Q Consensus       153 ~~  154 (156)
                      |.
T Consensus       107 P~  108 (152)
T 3gl3_A          107 PT  108 (152)
T ss_dssp             SE
T ss_pred             Ce
Confidence            76

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.38  E-value=7.5e-13  Score=94.31  Aligned_cols=59  Identities=14%  Similarity=0.332  Sum_probs=52.6

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC----------------------HHHHHHhCCccc
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV----------------------SKDLVKRGNISV  152 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~----------------------~~l~~~~~i~sv  152 (156)
                      .|+++||+||++||++|+.+.|.+.++++++++ ++.++.|++++.                      .++++.|++.++
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            589999999999999999999999999999975 599999999764                      478888999888


Q ss_pred             ee
Q 031608          153 SI  154 (156)
Q Consensus       153 ~~  154 (156)
                      |+
T Consensus       105 P~  106 (151)
T 2f9s_A          105 PT  106 (151)
T ss_dssp             CE
T ss_pred             Ce
Confidence            76

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.38  E-value=9.6e-13  Score=92.26  Aligned_cols=60  Identities=15%  Similarity=0.336  Sum_probs=53.6

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc-CCeEEEEEECCC-------------------------CHHHHHHhCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK-------------------------VSKDLVKRGN  149 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~-~~v~~~~vd~d~-------------------------~~~l~~~~~i  149 (156)
                      .++++||+||++||++|+.+.|.+.+++++++ .++.++.|+++.                         +.++++.|++
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            48999999999999999999999999999997 469999999954                         6688999999


Q ss_pred             ccceec
Q 031608          150 ISVSIQ  155 (156)
Q Consensus       150 ~sv~~~  155 (156)
                      .++|..
T Consensus       113 ~~~P~~  118 (145)
T 3erw_A          113 ITIPTS  118 (145)
T ss_dssp             CEESEE
T ss_pred             CccCeE
Confidence            988863

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.38  E-value=5e-13  Score=95.81  Aligned_cols=42  Identities=12%  Similarity=0.328  Sum_probs=38.9

Q ss_pred             CCCcEEEEEeCCCChhHHh-hhHHHHHHHHHhcC-CeEEEEEEC
Q 031608           96 LSQPILIDWMASWCRKCIY-LKPKLEKLAAEFDT-KLKFYYVDV  137 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~-~~p~l~~la~~~~~-~v~~~~vd~  137 (156)
                      .||++||+|||+||++|+. +.|.+++++++|++ ++.++.|++
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~   72 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHS   72 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEEC
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEec
Confidence            5899999999999999999 59999999999986 499999996

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.37  E-value=1e-12  Score=93.47  Aligned_cols=60  Identities=20%  Similarity=0.291  Sum_probs=53.4

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCH-----------------------HHHHHhCCcc
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS-----------------------KDLVKRGNIS  151 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~-----------------------~l~~~~~i~s  151 (156)
                      .|+++||.||++||++|+.+.|.+.++++++++ ++.++.|+++...                       ++++.|++.+
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            589999999999999999999999999999976 5999999998865                       6788899888


Q ss_pred             ceec
Q 031608          152 VSIQ  155 (156)
Q Consensus       152 v~~~  155 (156)
                      +|..
T Consensus       109 ~P~~  112 (152)
T 2lja_A          109 IPRF  112 (152)
T ss_dssp             SCCE
T ss_pred             CCEE
Confidence            7753

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.37  E-value=4.6e-13  Score=101.67  Aligned_cols=72  Identities=17%  Similarity=0.213  Sum_probs=60.1

Q ss_pred             CChhhHHHHH-HHhhcCCCcEEEEEeCC-CChhHHhhhHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHhCCccceec
Q 031608           81 NDSDHLDQIL-LRAQELSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNISVSIQ  155 (156)
Q Consensus        81 ~~~~~~~~~l-~~a~~~~k~vlV~F~A~-WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~~~i~sv~~~  155 (156)
                      .+.+++++++ ..  ..+..+++.|||+ ||++|+.+.|.++++++. .+++.|+.||+++  +++++++|||.++|+.
T Consensus         7 ~~~~~~~~~~~~~--~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~   82 (226)
T 1a8l_A            7 ADKKVIKEEFFSK--MVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPAT   82 (226)
T ss_dssp             HHHHHHHHHTGGG--CCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEE
T ss_pred             HHHHHHHHHHHHh--cCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceE
Confidence            3455677766 32  3456678999999 999999999999999865 4479999999999  9999999999999864

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.36  E-value=1.6e-12  Score=92.89  Aligned_cols=44  Identities=14%  Similarity=0.348  Sum_probs=40.6

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~  139 (156)
                      .|+++||+|||+||++|+.+.|.++++++++.+ ++.++.|++|+
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~   67 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDT   67 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCC
Confidence            589999999999999999999999999999854 69999999974

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.35  E-value=1.1e-12  Score=95.17  Aligned_cols=86  Identities=15%  Similarity=0.221  Sum_probs=61.3

Q ss_pred             ccccchhccccCCCCCCCcc-ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEE
Q 031608           56 ARRDVRVEALWPDLSRPTSV-ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYY  134 (156)
Q Consensus        56 ~~r~~~~~~~~~~~~~p~~~-~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~  134 (156)
                      ....+.++...|++.+++.. ....+. .+.+        ..|+++||+||++||++|+.+.|.+++++++   ++.++.
T Consensus        18 ~~~~~~~G~~~P~f~l~~~~~~g~~~~-~~~~--------~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~   85 (168)
T 2b1k_A           18 NLESALIGKPVPKFRLESLDNPGQFYQ-ADVL--------TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVG   85 (168)
T ss_dssp             -CCCTTTTSBCCCCEEEESSSTTCEEE-GGGG--------CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEE
T ss_pred             cccccccCCcCCCeEeecccCCCcEee-hhHh--------cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEE
Confidence            33455677777777665431 112221 1111        3699999999999999999999999999876   488888


Q ss_pred             EEC-----------------------CCCHHHHHHhCCccce
Q 031608          135 VDV-----------------------NKVSKDLVKRGNISVS  153 (156)
Q Consensus       135 vd~-----------------------d~~~~l~~~~~i~sv~  153 (156)
                      |++                       +.+.+++++|+|.++|
T Consensus        86 v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  127 (168)
T 2b1k_A           86 MNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP  127 (168)
T ss_dssp             EEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSS
T ss_pred             EECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccccC
Confidence            884                       4456788888988887

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.34  E-value=8.7e-13  Score=97.33  Aligned_cols=87  Identities=17%  Similarity=0.379  Sum_probs=63.3

Q ss_pred             ccccccchhccccCCCCCCCccc-eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEE
Q 031608           54 KSARRDVRVEALWPDLSRPTSVE-LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKF  132 (156)
Q Consensus        54 ~~~~r~~~~~~~~~~~~~p~~~~-~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~  132 (156)
                      ......+.++..+|++.++.... ...+... ++         .|+++||+||++||++|+.+.|.+++++++   ++.+
T Consensus        24 ~~~~~~~~~G~~~P~f~l~~~~g~~~~~~l~-~~---------~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~v   90 (176)
T 3kh7_A           24 PSELPSALIGKPFPAFDLPSVQDPARRLTEA-DL---------KGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVI   90 (176)
T ss_dssp             GGGSTTTTTTSBCCCCEEEBSSCTTSEEEGG-GG---------CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEE
T ss_pred             cccccccccCCcCCCcEecccCCCCceecHH-Hh---------CCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEE
Confidence            34455677788888887765432 1223212 22         589999999999999999999999999886   4899


Q ss_pred             EEEECCC-----------------------CHHHHHHhCCccce
Q 031608          133 YYVDVNK-----------------------VSKDLVKRGNISVS  153 (156)
Q Consensus       133 ~~vd~d~-----------------------~~~l~~~~~i~sv~  153 (156)
                      +.|++++                       +.++++.|++.++|
T Consensus        91 v~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  134 (176)
T 3kh7_A           91 YGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAP  134 (176)
T ss_dssp             EEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSC
T ss_pred             EEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCC
Confidence            9998643                       44566777777766

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.34  E-value=2.9e-12  Score=88.67  Aligned_cols=59  Identities=20%  Similarity=0.304  Sum_probs=52.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC-----------------------CHHHHHHhCCccc
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-----------------------VSKDLVKRGNISV  152 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~-----------------------~~~l~~~~~i~sv  152 (156)
                      .|++++|.||++||++|+.+.|.+++++++++ ++.++.|++++                       +.+++++|++.++
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~  102 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCC
Confidence            58999999999999999999999999999998 79999999854                       5678888888888


Q ss_pred             eec
Q 031608          153 SIQ  155 (156)
Q Consensus       153 ~~~  155 (156)
                      |..
T Consensus       103 P~~  105 (136)
T 1zzo_A          103 PAY  105 (136)
T ss_dssp             SEE
T ss_pred             ceE
Confidence            753

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.34  E-value=2.8e-12  Score=91.30  Aligned_cols=59  Identities=19%  Similarity=0.398  Sum_probs=52.4

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC-----------------------HHHHHHhCCcc
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV-----------------------SKDLVKRGNIS  151 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~-----------------------~~l~~~~~i~s  151 (156)
                      .|+++||.||++||++|+.+.|.+.++++++++ ++.++.|+++..                       ..+++.|++.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            589999999999999999999999999999986 699999999875                       33778899988


Q ss_pred             cee
Q 031608          152 VSI  154 (156)
Q Consensus       152 v~~  154 (156)
                      +|.
T Consensus       107 ~P~  109 (154)
T 3kcm_A          107 VPE  109 (154)
T ss_dssp             BCE
T ss_pred             CCe
Confidence            873

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.33  E-value=1.9e-12  Score=92.32  Aligned_cols=82  Identities=21%  Similarity=0.365  Sum_probs=63.6

Q ss_pred             cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC-
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV-  137 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~-  137 (156)
                      .+..+..+|++.++... ...+... ++         . +++||+||++||++|+.+.|.+.++++++  ++.++.|++ 
T Consensus         4 ~l~~g~~~p~f~l~~~~-g~~~~l~-~~---------~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d   69 (154)
T 3ia1_A            4 AVKPGEPLPDFLLLDPK-GQPVTPA-TV---------S-KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISRE   69 (154)
T ss_dssp             CCCSBEECCCCCEECTT-SCEECTT-TS---------C-SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECC
T ss_pred             cCCCCCcCCceEEECCC-CCEechH-Hc---------C-CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCC
Confidence            35567777777776542 2334322 23         4 99999999999999999999999999999  589999999 


Q ss_pred             --------------------------CCCHHHHHHhCCcccee
Q 031608          138 --------------------------NKVSKDLVKRGNISVSI  154 (156)
Q Consensus       138 --------------------------d~~~~l~~~~~i~sv~~  154 (156)
                                                +...++++.|++.++|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~  112 (154)
T 3ia1_A           70 PRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPW  112 (154)
T ss_dssp             TTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCE
T ss_pred             CcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCcccE
Confidence                                      35677788888888775

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.33  E-value=2.4e-12  Score=95.22  Aligned_cols=84  Identities=14%  Similarity=0.120  Sum_probs=62.5

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC-
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-  138 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d-  138 (156)
                      +.++...|++.+.+.. ...+... ++         .|+++||+|||+||++|+.+.|.++++++++.+++.++.|+++ 
T Consensus         7 ~~~g~~~p~f~l~~~~-G~~~~l~-~~---------~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~   75 (188)
T 2cvb_A            7 LPLESPLIDAELPDPR-GGRYRLS-QF---------HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINAND   75 (188)
T ss_dssp             CCTTCBCCCCEEECTT-SCEEEGG-GC---------CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCC
T ss_pred             CCCCCCCCCceeecCC-CCEEeHH-Hh---------CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCc
Confidence            3445566666655432 2223212 22         5899999999999999999999999999999866999999983 


Q ss_pred             ----------------------------CCHHHHHHhCCcccee
Q 031608          139 ----------------------------KVSKDLVKRGNISVSI  154 (156)
Q Consensus       139 ----------------------------~~~~l~~~~~i~sv~~  154 (156)
                                                  .+.++++.|++.++|.
T Consensus        76 ~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  119 (188)
T 2cvb_A           76 YEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPE  119 (188)
T ss_dssp             TTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCEESE
T ss_pred             cccccccCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCCCe
Confidence                                        3557788888887774

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.33  E-value=1.7e-12  Score=109.92  Aligned_cols=74  Identities=16%  Similarity=0.286  Sum_probs=61.5

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc-C--CeEEEEEECCCCHHHHHHhCCccc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-T--KLKFYYVDVNKVSKDLVKRGNISV  152 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~-~--~v~~~~vd~d~~~~l~~~~~i~sv  152 (156)
                      .+..++ .++|++.+.   ..++++||+|||+||++|+.+.|.++++++.+. +  ++.++++|++.+... . |+|.++
T Consensus       359 ~v~~l~-~~~f~~~v~---~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~  432 (504)
T 2b5e_A          359 SVFQLV-GKNHDEIVN---DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGY  432 (504)
T ss_dssp             SEEEEC-TTTHHHHHH---CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSS
T ss_pred             cceecc-cccHHHhhc---cCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceec
Confidence            355565 558888875   568999999999999999999999999999886 2  699999999877644 3 999998


Q ss_pred             eec
Q 031608          153 SIQ  155 (156)
Q Consensus       153 ~~~  155 (156)
                      |+.
T Consensus       433 Pt~  435 (504)
T 2b5e_A          433 PTI  435 (504)
T ss_dssp             SEE
T ss_pred             CeE
Confidence            864

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.31  E-value=2.9e-12  Score=91.24  Aligned_cols=85  Identities=16%  Similarity=0.300  Sum_probs=59.5

Q ss_pred             ccchhccccCCCCCCCccce-------EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCe
Q 031608           58 RDVRVEALWPDLSRPTSVEL-------EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKL  130 (156)
Q Consensus        58 r~~~~~~~~~~~~~p~~~~~-------~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v  130 (156)
                      ....++...|++..++..+.       ..+... ++         .|++++|+||++||++|+.+.|.+++++++  +++
T Consensus         6 ~~~~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~-~~---------~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v   73 (156)
T 1kng_A            6 PSALIGRPAPQTALPPLEGLQADNVQVPGLDPA-AF---------KGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRF   73 (156)
T ss_dssp             ------CBCCCCCBCCCTTCEETTEECCCBCGG-GG---------TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTS
T ss_pred             hhHHhCCCCCCceeeeccCcccccccCceechH-Hh---------CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCe
Confidence            34556777788877665321       333322 22         589999999999999999999999999876  458


Q ss_pred             EEEEEECCC-----------------------CHHHHHHhCCcccee
Q 031608          131 KFYYVDVNK-----------------------VSKDLVKRGNISVSI  154 (156)
Q Consensus       131 ~~~~vd~d~-----------------------~~~l~~~~~i~sv~~  154 (156)
                      .++.|++++                       ..++++.|++.++|.
T Consensus        74 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  120 (156)
T 1kng_A           74 QLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE  120 (156)
T ss_dssp             EEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred             EEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccCe
Confidence            999988754                       446778888888873

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.31  E-value=3.2e-12  Score=94.12  Aligned_cols=52  Identities=13%  Similarity=0.257  Sum_probs=45.9

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCC-e------EEEEEECCC-CHHHHHHh
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK-L------KFYYVDVNK-VSKDLVKR  147 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~-v------~~~~vd~d~-~~~l~~~~  147 (156)
                      .||++||+||++||++|+.+.|.|.+++++|++. +      .|+.|++++ .++.+++|
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~  117 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDF  117 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHH
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHH
Confidence            5899999999999999999999999999998753 8      999999998 77777766

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.31  E-value=5.3e-12  Score=96.35  Aligned_cols=86  Identities=13%  Similarity=0.245  Sum_probs=66.8

Q ss_pred             ccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCc-EEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEE
Q 031608           58 RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYV  135 (156)
Q Consensus        58 r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~-vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~v  135 (156)
                      ..+.++..+|+|.++.. ....+... ++         .|++ +||+|||+||++|+.+.|.|++++++|.+ ++.|+.|
T Consensus        30 ~~l~~G~~aP~f~l~~~-~G~~v~l~-~~---------~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~V   98 (218)
T 3u5r_E           30 NSITLGTRAADFVLPDA-GGNLFTLA-EF---------KDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAI   98 (218)
T ss_dssp             CCCCTTCBCCCCCEECT-TCCEECGG-GG---------TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEE
T ss_pred             CcCCCCCcCCCcEeECC-CCCEEeHH-Hh---------CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence            34667788888887764 33344322 33         4785 99999999999999999999999999976 4999999


Q ss_pred             ECC-----------------------------CCHHHHHHhCCcccee
Q 031608          136 DVN-----------------------------KVSKDLVKRGNISVSI  154 (156)
Q Consensus       136 d~d-----------------------------~~~~l~~~~~i~sv~~  154 (156)
                      +++                             ...++++.|++..+|.
T Consensus        99 s~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~  146 (218)
T 3u5r_E           99 NSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAACTPD  146 (218)
T ss_dssp             ECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCCEESE
T ss_pred             ECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCCCCCe
Confidence            994                             3567888888887765

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.31  E-value=5.2e-12  Score=91.28  Aligned_cols=67  Identities=21%  Similarity=0.417  Sum_probs=52.2

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      ..++...|++.+... ....+... ++         .|+++||+||++||++|+.+.|.+.+++++++ ++.|+.|+++
T Consensus        11 ~~~g~~~p~~~l~~~-~g~~~~l~-~~---------~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d   77 (165)
T 3ha9_A           11 EEVLEREASFSLTTI-DGEVISLN-NV---------GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFW   77 (165)
T ss_dssp             HHHHHHHHCCCEEBT-TSCEECGG-GC---------CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECC
T ss_pred             ccccCcCCCCEeecC-CCCEeeHH-Hh---------CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEec
Confidence            345566677766553 22334322 22         58999999999999999999999999999998 7999999998

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.29  E-value=5.9e-12  Score=86.84  Aligned_cols=60  Identities=23%  Similarity=0.355  Sum_probs=51.7

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC----------------------------CCCHHHHHHh
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV----------------------------NKVSKDLVKR  147 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~----------------------------d~~~~l~~~~  147 (156)
                      .|+++||+||++||++|+.+.|.++++++++++++.++.++.                            +.+.++++.|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            589999999999999999999999999999877899999953                            3355788888


Q ss_pred             CCccceec
Q 031608          148 GNISVSIQ  155 (156)
Q Consensus       148 ~i~sv~~~  155 (156)
                      ++.++|..
T Consensus       101 ~v~~~P~~  108 (138)
T 4evm_A          101 GVRSYPTQ  108 (138)
T ss_dssp             TCCSSSEE
T ss_pred             CcccCCeE
Confidence            98887753

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.29  E-value=4.6e-12  Score=87.68  Aligned_cols=55  Identities=11%  Similarity=0.108  Sum_probs=50.0

Q ss_pred             CcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        98 k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+.|+.||++||++|+.++|.|++++++++  +.+..+|++++++++.+||+. +|+-
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d~~l~~~ygv~-VP~l   83 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEHLTRLYNDR-VPVL   83 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTCHHHHHHSTTS-CSEE
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCCHHHHHHhCCC-CceE
Confidence            367999999999999999999999998875  899999999999999999986 8863

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.28  E-value=4.7e-12  Score=96.46  Aligned_cols=72  Identities=17%  Similarity=0.184  Sum_probs=59.4

Q ss_pred             ChhhHHHHHHHhhcCCCcEEEEEe-----CCCChhHHhhhHHHHHHHHHh--cCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           82 DSDHLDQILLRAQELSQPILIDWM-----ASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        82 ~~~~~~~~l~~a~~~~k~vlV~F~-----A~WC~~Ck~~~p~l~~la~~~--~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      +.+++++++..  ...++++|.||     ++||++|+.+.|.++++++++  .+++.+++||++++++++++|||.++|+
T Consensus         7 ~~~~l~~~~~~--~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt   84 (229)
T 2ywm_A            7 VRMQLKELAQK--EFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPT   84 (229)
T ss_dssp             HHHHHHHHHHH--HCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSE
T ss_pred             HHHHHHHHHHH--hccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcE
Confidence            34577777721  24566666666     999999999999999998888  5679999999999999999999999986


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        85 l   85 (229)
T 2ywm_A           85 I   85 (229)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.28  E-value=3e-12  Score=85.25  Aligned_cols=49  Identities=18%  Similarity=0.149  Sum_probs=43.3

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ++.|||+||++|+.++|.|++++.++     +.+||++++++++.+||+. +|+-
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~~~l~~~~g~~-vPtl   51 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDDAALESAYGLR-VPVL   51 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTCHHHHHHHTTT-CSEE
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCCHHHHHHhCCC-cCeE
Confidence            78899999999999999999876542     6889999999999999997 8863

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.27  E-value=3.9e-12  Score=94.62  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=54.1

Q ss_pred             cccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEE
Q 031608           57 RRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYV  135 (156)
Q Consensus        57 ~r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~v  135 (156)
                      ++.......+|+|.+++. ....+... ++         .||++||+|||+||++|+.+.|.|.+++++|++ ++.++.|
T Consensus        17 ~~~~~~~~~~p~f~l~d~-~G~~~~l~-~~---------~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~i   85 (187)
T 3dwv_A           17 RKKMSAASSIFDFEVLDA-DHKPYNLV-QH---------KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAF   85 (187)
T ss_dssp             ---CTTCCSGGGSCCBBT-TSCBCCGG-GG---------TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEE
T ss_pred             hhhhcCCCccCCeEEEcC-CCCEeeHH-Hh---------CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEE
Confidence            344555667788887764 33344322 33         589999999999999999999999999999976 4999999


Q ss_pred             ECC
Q 031608          136 DVN  138 (156)
Q Consensus       136 d~d  138 (156)
                      ++|
T Consensus        86 s~d   88 (187)
T 3dwv_A           86 PSN   88 (187)
T ss_dssp             EBC
T ss_pred             ECc
Confidence            987

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.27  E-value=6.3e-12  Score=92.78  Aligned_cols=69  Identities=13%  Similarity=0.032  Sum_probs=51.8

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      -..+..+|+|.++... ...+... ++         .||++||+|||+||++|+.+.|.|.+++++|++ ++.++.|+++
T Consensus        12 ~~~~~~~p~f~l~d~~-G~~v~l~-~~---------~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d   80 (180)
T 3kij_A           12 KPKINSFYAFEVKDAK-GRTVSLE-KY---------KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCN   80 (180)
T ss_dssp             CCCCCCGGGCEEEBTT-SCEEEGG-GG---------TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECC
T ss_pred             cCCcCcccceEEecCC-CCEecHH-Hc---------CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence            3445556666665532 2333322 23         589999999999999999999999999999986 4999999876


Q ss_pred             C
Q 031608          139 K  139 (156)
Q Consensus       139 ~  139 (156)
                      .
T Consensus        81 ~   81 (180)
T 3kij_A           81 Q   81 (180)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.26  E-value=5.9e-12  Score=90.48  Aligned_cols=61  Identities=20%  Similarity=0.256  Sum_probs=48.7

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc-CCeEEEEEEC----------------------------CCCHHHHH
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDV----------------------------NKVSKDLV  145 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~-~~v~~~~vd~----------------------------d~~~~l~~  145 (156)
                      ..|+++||+|||+||++|+.+.|.|++++++|. .++.++.|++                            +.+.++++
T Consensus        36 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  115 (164)
T 2h30_A           36 KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQ  115 (164)
T ss_dssp             CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred             hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHH
Confidence            368999999999999999999999999998874 2477776664                            33567778


Q ss_pred             HhCCccceec
Q 031608          146 KRGNISVSIQ  155 (156)
Q Consensus       146 ~~~i~sv~~~  155 (156)
                      +|+|.++|+.
T Consensus       116 ~~~v~~~P~~  125 (164)
T 2h30_A          116 NLNISVYPSW  125 (164)
T ss_dssp             HTTCCSSSEE
T ss_pred             HcCCCccceE
Confidence            8888777753

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.25  E-value=2.2e-11  Score=89.71  Aligned_cols=55  Identities=16%  Similarity=0.414  Sum_probs=48.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc-CCeEEEEEECCCC-----HHHHHHhCCc
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV-----SKDLVKRGNI  150 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~-~~v~~~~vd~d~~-----~~l~~~~~i~  150 (156)
                      .||++||+||++||++|+.+.|.+++++++++ .++.++.|+++..     .+.++++++.
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~  119 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLT  119 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCC
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCC
Confidence            58999999999999999999999999999997 4699999999865     4667777774

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.25  E-value=7.7e-12  Score=92.75  Aligned_cols=59  Identities=14%  Similarity=0.201  Sum_probs=50.6

Q ss_pred             CCC-cEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC-----------------------------CCHHHH
Q 031608           96 LSQ-PILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN-----------------------------KVSKDL  144 (156)
Q Consensus        96 ~~k-~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d-----------------------------~~~~l~  144 (156)
                      .|+ ++||+|||+||++|+.+.|.+.++++++.+ ++.++.|++|                             .+.+++
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  123 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVA  123 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHH
Confidence            477 499999999999999999999999999975 4999999984                             355778


Q ss_pred             HHhCCcccee
Q 031608          145 VKRGNISVSI  154 (156)
Q Consensus       145 ~~~~i~sv~~  154 (156)
                      +.|++.++|.
T Consensus       124 ~~~~v~~~P~  133 (196)
T 2ywi_A          124 KAYDAACTPD  133 (196)
T ss_dssp             HHHTCCEESE
T ss_pred             HHhCCCCCCe
Confidence            8888887764

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.89  E-value=6.3e-13  Score=93.46  Aligned_cols=60  Identities=18%  Similarity=0.355  Sum_probs=50.6

Q ss_pred             CCC-cEEEEEeCCCChhHHhhhHHHHHHHHHhc---CCeEEEEEECCCCH-------------------------HHHHH
Q 031608           96 LSQ-PILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVS-------------------------KDLVK  146 (156)
Q Consensus        96 ~~k-~vlV~F~A~WC~~Ck~~~p~l~~la~~~~---~~v~~~~vd~d~~~-------------------------~l~~~  146 (156)
                      .|+ +++|+|||+||++|+.+.|.++++++++.   .++.++.|++++.+                         +++++
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            377 99999999999999999999999999883   36889999887653                         67888


Q ss_pred             hCCccceec
Q 031608          147 RGNISVSIQ  155 (156)
Q Consensus       147 ~~i~sv~~~  155 (156)
                      |+|.++|..
T Consensus       104 ~~v~~~P~~  112 (143)
T 2lus_A          104 YGITGIPAL  112 (143)
Confidence            888887753

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.24  E-value=8.5e-12  Score=92.23  Aligned_cols=71  Identities=13%  Similarity=0.070  Sum_probs=50.8

Q ss_pred             ccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031608           58 RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD  136 (156)
Q Consensus        58 r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd  136 (156)
                      ..+.++...|++.++... ...+... ++         .|+++||+|||+||++|+.+.|.|+++++++.+ ++.++.|+
T Consensus        21 ~~~~~g~~~p~f~l~~~~-G~~~~l~-~~---------~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs   89 (181)
T 2p31_A           21 QSMQQEQDFYDFKAVNIR-GKLVSLE-KY---------RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFP   89 (181)
T ss_dssp             ------CCGGGCEEEBTT-SCEEEGG-GG---------TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             CcCCcCCccCceEeecCC-CCEecHH-Hc---------CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEE
Confidence            345566677777666532 2333222 23         589999999999999999999999999999975 49999999


Q ss_pred             CCC
Q 031608          137 VNK  139 (156)
Q Consensus       137 ~d~  139 (156)
                      +|+
T Consensus        90 ~d~   92 (181)
T 2p31_A           90 CNQ   92 (181)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            873

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.24  E-value=9.5e-12  Score=89.81  Aligned_cols=69  Identities=10%  Similarity=-0.015  Sum_probs=51.1

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      ...+...|++.++... ...+... ++         .|+++||+|||+||++|+.+.|.+.++++++.+ ++.++.|++|
T Consensus         5 ~~~g~~~p~f~l~~~~-G~~~~l~-~~---------~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d   73 (169)
T 2v1m_A            5 HKSWNSIYEFTVKDIN-GVDVSLE-KY---------RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCN   73 (169)
T ss_dssp             --CCCSGGGCEEEBTT-SCEEEGG-GG---------TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             ccCCcccccceeecCC-CCCccHH-Hc---------CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECC
Confidence            4455666666665432 2233222 22         589999999999999999999999999999975 5999999986


Q ss_pred             C
Q 031608          139 K  139 (156)
Q Consensus       139 ~  139 (156)
                      +
T Consensus        74 ~   74 (169)
T 2v1m_A           74 Q   74 (169)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.23  E-value=4e-12  Score=82.32  Aligned_cols=55  Identities=11%  Similarity=0.111  Sum_probs=45.0

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC-CCHHHHHHhCCccceec
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGNISVSIQ  155 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d-~~~~l~~~~~i~sv~~~  155 (156)
                      ++.||++||++|+.+.|.+++++++++..+.++.||.+ +.+++++++|+.++|+-
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~   59 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPAL   59 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEE
Confidence            67799999999999999999998776534555555554 57899999999999874

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.22  E-value=3.2e-11  Score=94.23  Aligned_cols=71  Identities=13%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeC--CCChhHHhhhHHHHHHHHHhc--CCeEEEEEECC-----CCHHHHHH
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMA--SWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVN-----KVSKDLVK  146 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A--~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d-----~~~~l~~~  146 (156)
                      .+..++ .++|++++    ..++++||+|||  |||+    +.|.|+++++.+.  +++.|++||++     ++++++++
T Consensus         6 ~v~~Lt-~~nF~~~i----~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~   76 (240)
T 2qc7_A            6 GALPLD-TVTFYKVI----PKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEK   76 (240)
T ss_dssp             TCEECC-TTHHHHHG----GGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHH
T ss_pred             CceECC-HHHHHHHH----cCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHH
Confidence            345555 56899988    458899999999  9999    9999999999985  36999999955     48999999


Q ss_pred             hCCc--cceec
Q 031608          147 RGNI--SVSIQ  155 (156)
Q Consensus       147 ~~i~--sv~~~  155 (156)
                      |+|.  ++|+.
T Consensus        77 ~~V~~~~~PTl   87 (240)
T 2qc7_A           77 YKLDKESYPVF   87 (240)
T ss_dssp             TTCCGGGCSEE
T ss_pred             cCCCCCCCCEE
Confidence            9999  99874

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.21  E-value=1.6e-11  Score=88.87  Aligned_cols=80  Identities=11%  Similarity=-0.019  Sum_probs=59.5

Q ss_pred             hhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCc-EEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC
Q 031608           61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQP-ILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV  137 (156)
Q Consensus        61 ~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~-vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~  137 (156)
                      .++..+|++.++.. ....+... ++         .|++ +||+|| |+||++|+.+.|.|.++++++++ ++.++.|+.
T Consensus         3 ~~G~~~P~f~l~~~-~G~~~~l~-~~---------~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~   71 (161)
T 3drn_A            3 KVGDKAPLFEGIAD-NGEKISLS-DY---------IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSS   71 (161)
T ss_dssp             CTTSBCCCCEEEET-TSCEEEGG-GT---------TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEES
T ss_pred             CCCCcCCCeEeecC-CCCEEEHH-Hh---------cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            45666777766653 22333222 23         4787 999999 99999999999999999999975 599999999


Q ss_pred             C---------------------CCHHHHHHhCCcc
Q 031608          138 N---------------------KVSKDLVKRGNIS  151 (156)
Q Consensus       138 d---------------------~~~~l~~~~~i~s  151 (156)
                      |                     ...++++.||+..
T Consensus        72 d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (161)
T 3drn_A           72 DDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKG  106 (161)
T ss_dssp             CCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCC
Confidence            8                     3456677777765

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.21  E-value=1.5e-11  Score=84.23  Aligned_cols=53  Identities=23%  Similarity=0.300  Sum_probs=42.8

Q ss_pred             CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC-----HHHHHHhCCcccee
Q 031608           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-----SKDLVKRGNISVSI  154 (156)
Q Consensus        97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~-----~~l~~~~~i~sv~~  154 (156)
                      ++++++ ||++||++|+.+.|.|+++..+    +.++.||.+..     .++++++|+.++|+
T Consensus        19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~~----~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt   76 (116)
T 2e7p_A           19 SAPVVV-FSKTYCGYCNRVKQLLTQVGAS----YKVVELDELSDGSQLQSALAHWTGRGTVPN   76 (116)
T ss_dssp             SSSEEE-EECTTCHHHHHHHHHHHHHTCC----CEEEEGGGSTTHHHHHHHHHHHHSCCSSCE
T ss_pred             CCCEEE-EECCCChhHHHHHHHHHHcCCC----eEEEEccCCCChHHHHHHHHHHhCCCCcCE
Confidence            566666 9999999999999999988543    56666666665     57899999999986

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.21  E-value=1.6e-11  Score=93.37  Aligned_cols=43  Identities=16%  Similarity=0.141  Sum_probs=40.1

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .|+++||+|||+||++|+.+.|.|++++++|.+ ++.++.|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            589999999999999999999999999999975 4999999986

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.20  E-value=2e-11  Score=88.14  Aligned_cols=43  Identities=19%  Similarity=0.197  Sum_probs=40.2

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .||++||+|||+||++|+.+.|.+.++++++.+ ++.++.|++|
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d   74 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCN   74 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECC
Confidence            589999999999999999999999999999976 4999999986

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.19  E-value=3.6e-11  Score=89.49  Aligned_cols=68  Identities=16%  Similarity=0.094  Sum_probs=51.6

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      +..+..+|++.+++.. ...+... ++         .|+++||+|||+||++|+.+.|.|.++++++.+ ++.++.|++|
T Consensus        22 ~~~~~~~p~f~l~~~~-G~~~~l~-~~---------~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   90 (190)
T 2vup_A           22 MSAASSIFDFEVLDAD-HKPYNLV-QH---------KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCN   90 (190)
T ss_dssp             --CCCSGGGSCCBBTT-SSBCCGG-GG---------TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             CCCCCcccCeEEEcCC-CCEEEHH-Hc---------CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcC
Confidence            4445566777776542 2333322 33         589999999999999999999999999999975 4999999987

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.19  E-value=3.9e-11  Score=98.49  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=51.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC---------------------------CHHHHHHh
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK---------------------------VSKDLVKR  147 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~---------------------------~~~l~~~~  147 (156)
                      .||++||+|||+||++|+.+.|.|++++++|++ ++.++.|++++                           +.+++++|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            589999999999999999999999999999976 59999998753                           35678888


Q ss_pred             CCcccee
Q 031608          148 GNISVSI  154 (156)
Q Consensus       148 ~i~sv~~  154 (156)
                      +|..+|.
T Consensus       161 gV~~~Pt  167 (352)
T 2hyx_A          161 RNRYWPA  167 (352)
T ss_dssp             TCCEESE
T ss_pred             CCCccCE
Confidence            8887775

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.19  E-value=3.6e-12  Score=89.39  Aligned_cols=61  Identities=7%  Similarity=-0.008  Sum_probs=45.1

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHh--cCCeEEEEEECCCC--HHHHHHhCCccceecC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKV--SKDLVKRGNISVSIQI  156 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~--~~~v~~~~vd~d~~--~~l~~~~~i~sv~~~~  156 (156)
                      +...+||+|||+||++|+.+.|.+....+..  ...+.++.||++++  ++++.+++|.++|+.|
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i   81 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFV   81 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEE
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEE
Confidence            4678999999999999999987654332211  00267899999875  5889999999998764

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.19  E-value=3.5e-11  Score=85.48  Aligned_cols=60  Identities=17%  Similarity=0.226  Sum_probs=51.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC-----------------------CCCHHHHHHhCCcc
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV-----------------------NKVSKDLVKRGNIS  151 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~-----------------------d~~~~l~~~~~i~s  151 (156)
                      .|+++||.||++||++|+.+.|.+.++++++++ ++.++.|+.                       +.+.++++.|++.+
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            589999999999999999999999999999975 488888774                       34667888899888


Q ss_pred             ceec
Q 031608          152 VSIQ  155 (156)
Q Consensus       152 v~~~  155 (156)
                      +|..
T Consensus       107 ~P~~  110 (153)
T 2l5o_A          107 YPTS  110 (153)
T ss_dssp             SSEE
T ss_pred             cCeE
Confidence            7753

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.19  E-value=2.8e-11  Score=94.15  Aligned_cols=76  Identities=16%  Similarity=0.090  Sum_probs=64.5

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCC--ChhHHhhhHHHHHHHHHhc---CC--eEEEEEECCCCHHHHHHhCC
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFD---TK--LKFYYVDVNKVSKDLVKRGN  149 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~W--C~~Ck~~~p~l~~la~~~~---~~--v~~~~vd~d~~~~l~~~~~i  149 (156)
                      +....+.++|++++.   .-+++++|.||++|  |++|+.+.|.++++++.++   ++  +.|+.+|++++++++.+|||
T Consensus         8 ~~~~~~~~ql~~~~~---~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv   84 (243)
T 2hls_A            8 DLSEDFRRELRETLA---EMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKV   84 (243)
T ss_dssp             CCCHHHHHHHHHHHT---TCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTC
T ss_pred             hCCHHHHHHHHHHHH---hCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCC
Confidence            344556678888885   45789999999999  9999999999999998853   22  99999999999999999999


Q ss_pred             ccceec
Q 031608          150 ISVSIQ  155 (156)
Q Consensus       150 ~sv~~~  155 (156)
                      .++|+.
T Consensus        85 ~~~Pt~   90 (243)
T 2hls_A           85 ERVPTV   90 (243)
T ss_dssp             CSSSEE
T ss_pred             CcCCEE
Confidence            998864

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.81  E-value=1.9e-12  Score=93.05  Aligned_cols=53  Identities=17%  Similarity=0.390  Sum_probs=44.6

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHH-HHHHhc--CCeEEEEEECCCCHHHHHHhC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEK-LAAEFD--TKLKFYYVDVNKVSKDLVKRG  148 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~-la~~~~--~~v~~~~vd~d~~~~l~~~~~  148 (156)
                      .|++++|+|||+||++|+.+.|.+.+ +.+++.  .++.++.|++++.++.+++|.
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~   87 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFA   87 (159)
Confidence            48999999999999999999999998 888776  369999999987665554443

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.17  E-value=6.8e-11  Score=100.99  Aligned_cols=70  Identities=16%  Similarity=0.180  Sum_probs=59.9

Q ss_pred             ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        82 ~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +.+.++.+..   ..++..++.|||+||++|+.+.|.+++++.+++ ++.+..+|.+++++++.+|+|.++|+-
T Consensus       105 ~~~~~~~i~~---~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~~~vd~~~~~~~~~~~~i~svPt~  174 (521)
T 1hyu_A          105 AQSLLEQIRD---IDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQNEITERNVMGVPAV  174 (521)
T ss_dssp             CHHHHHHHHH---CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CHHHHHHHHh---cCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEEEEEechhhHHHHHHhCCCccCEE
Confidence            3445555532   356778999999999999999999999999887 699999999999999999999999974

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.17  E-value=3.8e-11  Score=88.65  Aligned_cols=70  Identities=19%  Similarity=0.124  Sum_probs=53.2

Q ss_pred             ccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031608           58 RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD  136 (156)
Q Consensus        58 r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd  136 (156)
                      ....++..+|++.++... ...+... ++         .||++||+|||+||++|+.+.|.|.+++++|.+ ++.++.|+
T Consensus        19 ~~~~~g~~~p~f~l~~~~-G~~~~l~-~~---------~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs   87 (183)
T 2obi_A           19 DDWRCARSMHEFSAKDID-GHMVNLD-KY---------RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFP   87 (183)
T ss_dssp             CCGGGCCSGGGCEEEBTT-SCEEEGG-GG---------TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             cCCcccCcccceEEEcCC-CCEeeHH-Hc---------CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEE
Confidence            344566677777665532 2333222 23         589999999999999999999999999999975 59999999


Q ss_pred             CC
Q 031608          137 VN  138 (156)
Q Consensus       137 ~d  138 (156)
                      +|
T Consensus        88 ~d   89 (183)
T 2obi_A           88 CN   89 (183)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.16  E-value=3.9e-11  Score=87.82  Aligned_cols=73  Identities=10%  Similarity=0.018  Sum_probs=58.7

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCC--CHHHHHHhCCccceec
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNISVSIQ  155 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~--~~~l~~~~~i~sv~~~  155 (156)
                      ..++++.++.|+..+|+++|+||++||..|+.|....   .++++.+..++.++++|+++  ...++++|++.+.|+.
T Consensus        28 ~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~  105 (153)
T 2dlx_A           28 KGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYV  105 (153)
T ss_dssp             CSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEE
T ss_pred             ccCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEE
Confidence            3478888888878899999999999999999997654   44544443469999999976  4567899999988864

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.16  E-value=5.2e-11  Score=88.26  Aligned_cols=70  Identities=16%  Similarity=0.069  Sum_probs=53.4

Q ss_pred             ccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031608           58 RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD  136 (156)
Q Consensus        58 r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd  136 (156)
                      ....++...|++.+++.. ...+... ++         .|+++||+|||+||++|+.+.|.|.++++++.+ ++.++.|+
T Consensus        21 ~~~~~g~~~p~f~l~~~~-G~~v~l~-~~---------~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is   89 (185)
T 2gs3_A           21 QSMRCARSMHEFSAKDID-GHMVNLD-KY---------RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFP   89 (185)
T ss_dssp             GGGGGCCCGGGCEEEBTT-SCEEEGG-GG---------TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             hhccCCCCcCCceeEcCC-CCEeeHH-Hc---------CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEE
Confidence            345566677777666532 2333322 23         589999999999999999999999999999975 59999999


Q ss_pred             CC
Q 031608          137 VN  138 (156)
Q Consensus       137 ~d  138 (156)
                      +|
T Consensus        90 ~d   91 (185)
T 2gs3_A           90 CN   91 (185)
T ss_dssp             CC
T ss_pred             Cc
Confidence            86

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.16  E-value=5.8e-11  Score=85.84  Aligned_cols=66  Identities=14%  Similarity=0.248  Sum_probs=50.7

Q ss_pred             hccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChh-HHhhhHHHHHHHHHhcC----CeEEEEEE
Q 031608           62 VEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRK-CIYLKPKLEKLAAEFDT----KLKFYYVD  136 (156)
Q Consensus        62 ~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~-Ck~~~p~l~~la~~~~~----~v~~~~vd  136 (156)
                      .+...|++.+++...  .+... ++         .||++||+||++||++ |+.+.|.+.++++++.+    ++.++.|+
T Consensus        12 ~G~~~p~f~l~~~~g--~~~l~-~~---------~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is   79 (172)
T 2k6v_A           12 LNPKPVDFALEGPQG--PVRLS-QF---------QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVS   79 (172)
T ss_dssp             EEEEECCCEEECSSS--EEEGG-GS---------TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEE
T ss_pred             cCCCCCCeEEEcCCC--CCcHH-Hh---------CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEE
Confidence            345566776665433  34322 22         5899999999999998 99999999999998873    69999999


Q ss_pred             CCC
Q 031608          137 VNK  139 (156)
Q Consensus       137 ~d~  139 (156)
                      +|.
T Consensus        80 ~d~   82 (172)
T 2k6v_A           80 VDP   82 (172)
T ss_dssp             SCT
T ss_pred             ECC
Confidence            874

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.15  E-value=4.4e-11  Score=85.93  Aligned_cols=69  Identities=14%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCC-cEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQ-PILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD  136 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k-~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd  136 (156)
                      +.++...|++.+.... ...+... ++         .|+ ++||+|| |+||++|+.+.|.+.++++++.+ ++.++.|+
T Consensus         9 ~~~G~~~p~f~l~~~~-G~~~~l~-~~---------~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is   77 (160)
T 1xvw_A            9 LNVGATAPDFTLRDQN-QQLVTLR-GY---------RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAIS   77 (160)
T ss_dssp             CCTTSBCCCCEEECTT-SCEEEGG-GG---------TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEE
T ss_pred             CCCCCCCCCeEeEcCC-CCEEeHH-Hh---------cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEe
Confidence            4556666777665432 2233222 23         476 9999998 99999999999999999999964 69999999


Q ss_pred             CCC
Q 031608          137 VNK  139 (156)
Q Consensus       137 ~d~  139 (156)
                      +|.
T Consensus        78 ~d~   80 (160)
T 1xvw_A           78 VGP   80 (160)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            874

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.15  E-value=3.6e-11  Score=87.77  Aligned_cols=42  Identities=21%  Similarity=0.172  Sum_probs=38.7

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .||++||+|||+||++|+ +.|.|.++++++.+ ++.++.|++|
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d   73 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCN   73 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECc
Confidence            589999999999999999 99999999999975 4999999875

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.10  E-value=1.8e-10  Score=83.24  Aligned_cols=44  Identities=16%  Similarity=0.294  Sum_probs=39.9

Q ss_pred             CCCcEEEEEeCCCChh-HHhhhHHHHHHHHHhc-----CCeEEEEEECCC
Q 031608           96 LSQPILIDWMASWCRK-CIYLKPKLEKLAAEFD-----TKLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~-Ck~~~p~l~~la~~~~-----~~v~~~~vd~d~  139 (156)
                      .|+++||+||++||++ |+.+.|.++++++++.     +++.++.|++|.
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~   74 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDP   74 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCS
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECC
Confidence            5899999999999998 9999999999999984     369999999873

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.10  E-value=1.1e-10  Score=83.85  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=40.0

Q ss_pred             CCCcEEEEEeCCCChh-HHhhhHHHHHHHHHhcC-----CeEEEEEECCC
Q 031608           96 LSQPILIDWMASWCRK-CIYLKPKLEKLAAEFDT-----KLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~-Ck~~~p~l~~la~~~~~-----~v~~~~vd~d~  139 (156)
                      .|+++||+||++||++ |+.+.|.+.++++++++     ++.++.|++|.
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~   71 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDP   71 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCT
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCC
Confidence            5899999999999998 99999999999998853     69999999875

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.09  E-value=8.6e-11  Score=87.76  Aligned_cols=44  Identities=14%  Similarity=0.189  Sum_probs=40.7

Q ss_pred             CCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031608           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~  139 (156)
                      .|+++||+|| |+||++|+.+.|.|.++++++.+ ++.++.|++|.
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~   89 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDS   89 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSC
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4899999999 99999999999999999999975 59999999975

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.09  E-value=6.7e-11  Score=87.58  Aligned_cols=44  Identities=16%  Similarity=0.211  Sum_probs=40.5

Q ss_pred             CCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031608           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~  139 (156)
                      .|+++||+|| |+||++|+.+.|.|.++++++.+ ++.++.|++|.
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~   75 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDT   75 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            4899999999 99999999999999999999874 59999999975

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.09  E-value=5.2e-11  Score=80.74  Aligned_cols=54  Identities=17%  Similarity=0.235  Sum_probs=47.8

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC--CCHHHHHHhCCcccee
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN--KVSKDLVKRGNISVSI  154 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d--~~~~l~~~~~i~sv~~  154 (156)
                      ...+.++.|+++||++|+.++|.|++++.    ++.|..+|++  ++++++.+|| .++|+
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~----~i~~~~vdi~~~~~~el~~~~g-~~vP~   69 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD----RFILQEVDITLPENSTWYERYK-FDIPV   69 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS----SSEEEEEETTSSTTHHHHHHSS-SSCSE
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh----CCeEEEEECCCcchHHHHHHHC-CCCCE
Confidence            46778999999999999999999988653    3899999998  7899999999 99986

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.09  E-value=8.6e-12  Score=100.10  Aligned_cols=62  Identities=16%  Similarity=0.115  Sum_probs=47.4

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEE---C-CCCHHHHHHhCCccceec
Q 031608           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD---V-NKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd---~-d~~~~l~~~~~i~sv~~~  155 (156)
                      ..+.+.+.      +..+|+|||+|||||++++|.+++++++++    .+.+|   . +++++++++++|.++|+.
T Consensus       190 ~~la~~l~------~~~vV~F~A~WC~~Ck~l~p~le~lA~~l~----~Vd~d~~d~~~~~~~la~~~gI~~vPT~  255 (291)
T 3kp9_A          190 VGLAAHLR------QIGGTMYGAYWCPHCQDQKELFGAAFDQVP----YVECSPNGPGTPQAQECTEAGITSYPTW  255 (291)
T ss_dssp             HHHHHHHH------HTTCEEEECTTCHHHHHHHHHHGGGGGGSC----EEESCSSCSSSCCCHHHHTTTCCSTTEE
T ss_pred             HHHHHHhC------CCCEEEEECCCCHHHHHHHHHHHHHHHHcC----EEEEeecCchhhHHHHHHHcCCcccCeE
Confidence            35666663      334799999999999999999999987653    33344   2 237899999999999973

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.08  E-value=5.5e-11  Score=88.93  Aligned_cols=44  Identities=9%  Similarity=0.160  Sum_probs=40.4

Q ss_pred             CCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031608           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~  139 (156)
                      .|+++||+|| |+||++|+.+.|.|.++++++.+ ++.++.|+.|.
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~   77 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDS   77 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            5899999999 99999999999999999999864 59999999875

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.07  E-value=9e-11  Score=76.00  Aligned_cols=54  Identities=28%  Similarity=0.344  Sum_probs=47.0

Q ss_pred             EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC----HHHHHHhC--Ccccee
Q 031608          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV----SKDLVKRG--NISVSI  154 (156)
Q Consensus       100 vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~----~~l~~~~~--i~sv~~  154 (156)
                      -++.|+++||++|+.+.|.|++++.+++ ++.+..+|++++    .++++++|  +.++|+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~   61 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERD-DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQ   61 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHS-SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCE
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCC-CceEEEEecccChHHHHHHHHHhCCCCceeCe
Confidence            3678999999999999999999998876 499999999754    48888999  899886

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.07  E-value=1.2e-10  Score=84.41  Aligned_cols=68  Identities=10%  Similarity=0.168  Sum_probs=52.3

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCCh-hHHhhhHHHHHHHHHhcC---CeEEEEE
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCR-KCIYLKPKLEKLAAEFDT---KLKFYYV  135 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~-~Ck~~~p~l~~la~~~~~---~v~~~~v  135 (156)
                      +.++..+|++.++... ...+... ++         .|+++||+||++||+ +|+...|.+.++.+++.+   ++.++.|
T Consensus         7 l~~g~~~p~f~l~~~~-G~~~~l~-~~---------~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~i   75 (174)
T 1xzo_A            7 DPLNYEVEPFTFQNQD-GKNVSLE-SL---------KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISF   75 (174)
T ss_dssp             SCCCEECCCCEEECTT-SCEEETG-GG---------TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CccccccCCcEEEcCC-CCEEehh-hc---------CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEE
Confidence            4556677777766542 2333322 23         589999999999999 999999999999988864   3999999


Q ss_pred             ECC
Q 031608          136 DVN  138 (156)
Q Consensus       136 d~d  138 (156)
                      ++|
T Consensus        76 s~d   78 (174)
T 1xzo_A           76 SVD   78 (174)
T ss_dssp             ESC
T ss_pred             EeC
Confidence            997

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.07  E-value=1.6e-10  Score=86.82  Aligned_cols=70  Identities=7%  Similarity=0.064  Sum_probs=53.5

Q ss_pred             chhccccCCCCCCCcc-ce--EecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEE
Q 031608           60 VRVEALWPDLSRPTSV-EL--EPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYY  134 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~-~~--~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~  134 (156)
                      +.++..+|+|.++... +.  ..++.. ++         .|+++||+|| ++||++|+.+.|.|.+++++|.+ ++.++.
T Consensus         6 ~~~G~~aP~f~l~~~~~~g~~~~v~l~-~~---------~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~   75 (202)
T 1uul_A            6 AEDLHPAPDFNETALMPNGTFKKVALT-SY---------KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLA   75 (202)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEGG-GG---------TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEE
T ss_pred             ccCCCcCCCcEeeeeecCCCccEEEHH-Hh---------CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            4566777777766431 11  334322 33         4899999999 99999999999999999999965 699999


Q ss_pred             EECCC
Q 031608          135 VDVNK  139 (156)
Q Consensus       135 vd~d~  139 (156)
                      |++|.
T Consensus        76 Is~D~   80 (202)
T 1uul_A           76 CSMDS   80 (202)
T ss_dssp             EESSC
T ss_pred             EeCCC
Confidence            99975

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.02  E-value=2e-10  Score=83.23  Aligned_cols=68  Identities=21%  Similarity=0.297  Sum_probs=51.0

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCC-ChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~W-C~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      +.++...|++.++.. ....+.    +.++      .|++++|+||++| |++|+.+.|.+.++++++ .++.++.|+.|
T Consensus        18 ~~~G~~~p~f~l~~~-~G~~~~----l~~~------~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d   85 (167)
T 2jsy_A           18 VKVGDQAPDFTVLTN-SLEEKS----LADM------KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISAD   85 (167)
T ss_dssp             CCTTSCCCCCEEEBT-TCCEEE----HHHH------TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECS
T ss_pred             cCCCCcCCceEEECC-CCCEee----HHHh------CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            445666666665543 222332    2222      4899999999999 999999999999999999 67999999987


Q ss_pred             C
Q 031608          139 K  139 (156)
Q Consensus       139 ~  139 (156)
                      .
T Consensus        86 ~   86 (167)
T 2jsy_A           86 L   86 (167)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.99  E-value=3.4e-10  Score=86.63  Aligned_cols=72  Identities=8%  Similarity=0.084  Sum_probs=55.0

Q ss_pred             ccchhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEeC-CCChhHHhhhHHHHHHHHHhcC-CeEEE
Q 031608           58 RDVRVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFDT-KLKFY  133 (156)
Q Consensus        58 r~~~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A-~WC~~Ck~~~p~l~~la~~~~~-~v~~~  133 (156)
                      ..+.++..+|+|.++..  .....++.. ++         .||++||+||+ +||++|+.+.|.|.+++++|.+ ++.|+
T Consensus        38 ~~l~~G~~aP~f~l~~~~d~~G~~v~l~-~~---------~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv  107 (222)
T 3ztl_A           38 MVLLPNRPAPEFKGQAVINGEFKEICLK-DY---------RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVI  107 (222)
T ss_dssp             --CCSSEECCCCEEEEEETTEEEEEEGG-GG---------TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEE
T ss_pred             ccccCCCCCCCeEEecccCCCCcEEeHH-Hh---------CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEE
Confidence            35667788888887742  122344322 33         58999999997 9999999999999999999975 59999


Q ss_pred             EEECCC
Q 031608          134 YVDVNK  139 (156)
Q Consensus       134 ~vd~d~  139 (156)
                      .|++|.
T Consensus       108 ~Is~D~  113 (222)
T 3ztl_A          108 ACSTDS  113 (222)
T ss_dssp             EEESSC
T ss_pred             EEECCC
Confidence            999985

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.98  E-value=4.7e-10  Score=85.78  Aligned_cols=71  Identities=14%  Similarity=0.138  Sum_probs=53.9

Q ss_pred             cchhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEE
Q 031608           59 DVRVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYY  134 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~  134 (156)
                      .+.++..+|+|.++..  .....+... ++         .|+++||+|| ++||++|+.+.|.|.+++++|.+ ++.++.
T Consensus        26 ~l~~G~~aP~f~l~~~~~~~g~~v~l~-d~---------~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~   95 (220)
T 1zye_A           26 APAVTQHAPYFKGTAVVSGEFKEISLD-DF---------KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVA   95 (220)
T ss_dssp             -CCTTSBCCCCEEEEECSSSEEEEEGG-GG---------TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred             cccCCCCCCCcEEEeeeCCCCcEEEHH-Hh---------CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            4566777888877632  123344322 33         4899999999 99999999999999999999953 699999


Q ss_pred             EECCC
Q 031608          135 VDVNK  139 (156)
Q Consensus       135 vd~d~  139 (156)
                      |++|.
T Consensus        96 Is~D~  100 (220)
T 1zye_A           96 VSVDS  100 (220)
T ss_dssp             EESSC
T ss_pred             EECCC
Confidence            99875

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.97  E-value=6.2e-10  Score=84.79  Aligned_cols=71  Identities=13%  Similarity=0.117  Sum_probs=53.4

Q ss_pred             chhccccCCCCCCCcc-ce--EecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhc-CCeEEEE
Q 031608           60 VRVEALWPDLSRPTSV-EL--EPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYY  134 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~-~~--~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~-~~v~~~~  134 (156)
                      +.++..+|+|.++... ..  ..+...+ +        ..|+++||+|| |+||++|+.+.|.|.+++++|. .++.++.
T Consensus        21 l~~G~~aP~f~l~~~~~~G~~~~v~l~d-~--------~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~   91 (213)
T 2i81_A           21 TYVGKEAPFFKAEAVFGDNSFGEVNLTQ-F--------IGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLG   91 (213)
T ss_dssp             CCBTSBCCCCEEEEECTTSCEEEEEGGG-G--------TTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEE
T ss_pred             ccCCCcCCCeEeeccccCCceeEEeHHH-H--------cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            4566777777766531 12  3343222 1        15899999999 9999999999999999999996 3699999


Q ss_pred             EECCC
Q 031608          135 VDVNK  139 (156)
Q Consensus       135 vd~d~  139 (156)
                      |++|.
T Consensus        92 Is~D~   96 (213)
T 2i81_A           92 CSVDS   96 (213)
T ss_dssp             EESSC
T ss_pred             EeCCC
Confidence            99875

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.97  E-value=8.6e-10  Score=79.41  Aligned_cols=69  Identities=13%  Similarity=0.006  Sum_probs=54.0

Q ss_pred             chhccccCCCC--CCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeC-CCChhHHhhhHHHHHHHHHhcC-CeEEEEE
Q 031608           60 VRVEALWPDLS--RPTSVELEPINDSDHLDQILLRAQELSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFDT-KLKFYYV  135 (156)
Q Consensus        60 ~~~~~~~~~~~--~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A-~WC~~Ck~~~p~l~~la~~~~~-~v~~~~v  135 (156)
                      +.++..+|+|.  ++.. ....++.. ++         .|++++|+||+ +||++|+...|.+.++.++|.+ ++.++.|
T Consensus         7 l~~G~~~P~f~~~l~~~-~G~~~~l~-~~---------~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~v   75 (163)
T 3gkn_A            7 AVLELPAATFDLPLSLS-GGTQTTLR-AH---------AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGV   75 (163)
T ss_dssp             CCCCCCGGGGGCCEECS-TTCEECSG-GG---------TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccCCcCCCccccccCC-CCCEEEHH-Hh---------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            55677778887  6553 23444433 33         58899999998 9999999999999999999864 5999999


Q ss_pred             ECCC
Q 031608          136 DVNK  139 (156)
Q Consensus       136 d~d~  139 (156)
                      +.|.
T Consensus        76 s~d~   79 (163)
T 3gkn_A           76 SRDS   79 (163)
T ss_dssp             ESSC
T ss_pred             eCCC
Confidence            9984

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.97  E-value=1.4e-09  Score=83.48  Aligned_cols=42  Identities=24%  Similarity=0.334  Sum_probs=38.8

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .||++||+|||+||++|+ +.|.|++++++|.+ ++.++.|+++
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            599999999999999999 99999999999965 5999999976

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.96  E-value=4.4e-10  Score=83.56  Aligned_cols=44  Identities=14%  Similarity=0.183  Sum_probs=40.2

Q ss_pred             CCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhc-CCeEEEEEECCC
Q 031608           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~-~~v~~~~vd~d~  139 (156)
                      .|+++||+|| |+||++|+.+.|.|.+++++|. .++.++.|+.|.
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~   75 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDS   75 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence            5899999999 9999999999999999999985 369999999875

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.96  E-value=7.8e-10  Score=81.25  Aligned_cols=67  Identities=15%  Similarity=0.197  Sum_probs=50.6

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCC-ChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~W-C~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      +.++..+|++.++.. ....+... ++         .|+++||+||++| |++|+.+.|.|.+++++  .++.++.|+.|
T Consensus        18 l~~G~~~P~f~l~~~-~G~~v~l~-~~---------~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D   84 (175)
T 1xvq_A           18 PAVGSPAPAFTLTGG-DLGVISSD-QF---------RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKD   84 (175)
T ss_dssp             CCTTSBCCCCEEECT-TSCEEEGG-GG---------TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCcCCcCCCeEEECC-CCCEEeHH-Hc---------CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECC
Confidence            455666777766653 22333322 23         4899999999999 99999999999999988  46999999997


Q ss_pred             C
Q 031608          139 K  139 (156)
Q Consensus       139 ~  139 (156)
                      .
T Consensus        85 ~   85 (175)
T 1xvq_A           85 L   85 (175)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.95  E-value=1.3e-10  Score=84.36  Aligned_cols=69  Identities=20%  Similarity=0.357  Sum_probs=48.8

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV  137 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~  137 (156)
                      +.+|..+|+|.++.. ....+... ++         .||+++|+|| |+||++|+.+.|.+.++++++.+ ++.++.|+.
T Consensus         4 l~vG~~aPdF~l~~~-~G~~~~l~-d~---------~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~   72 (157)
T 4g2e_A            4 VEIGELAPDFELPDT-ELKKVKLS-AL---------KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISV   72 (157)
T ss_dssp             CCTTSBCCCCEEEBT-TSCEEEGG-GG---------TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEES
T ss_pred             CCCCCCCcCeEeECC-CCCEEeHH-HH---------CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecc
Confidence            567888899988764 33344322 33         5899999999 99999999999999999888864 689999998


Q ss_pred             CC
Q 031608          138 NK  139 (156)
Q Consensus       138 d~  139 (156)
                      |.
T Consensus        73 d~   74 (157)
T 4g2e_A           73 DP   74 (157)
T ss_dssp             SC
T ss_pred             cc
Confidence            75

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.95  E-value=1.4e-09  Score=88.04  Aligned_cols=74  Identities=11%  Similarity=0.091  Sum_probs=62.5

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC--CCHHHHHHhCCcc--c
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN--KVSKDLVKRGNIS--V  152 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d--~~~~l~~~~~i~s--v  152 (156)
                      +.+++ .+++.+++.   ...++++|.||++||++|+.+.|.|+++++++.+++.|+.+|++  +++++++.||+.+  +
T Consensus       119 v~~~~-~~~~~~~~~---~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~  194 (361)
T 3uem_A          119 VIEFT-EQTAPKIFG---GEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEEC  194 (361)
T ss_dssp             EEECS-TTTHHHHHS---CSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTC
T ss_pred             ceecC-cccHHHHhc---CCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCC
Confidence            34444 567888874   23467789999999999999999999999999988999999999  6999999999987  6


Q ss_pred             ee
Q 031608          153 SI  154 (156)
Q Consensus       153 ~~  154 (156)
                      |.
T Consensus       195 P~  196 (361)
T 3uem_A          195 PA  196 (361)
T ss_dssp             SE
T ss_pred             cc
Confidence            64

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.94  E-value=9.1e-10  Score=84.78  Aligned_cols=81  Identities=12%  Similarity=0.167  Sum_probs=56.7

Q ss_pred             hhccccCCCCCCCccceE--ecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHH-hhhHHHHHHHHHhcC-Ce-EEEE
Q 031608           61 RVEALWPDLSRPTSVELE--PINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCI-YLKPKLEKLAAEFDT-KL-KFYY  134 (156)
Q Consensus        61 ~~~~~~~~~~~p~~~~~~--~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck-~~~p~l~~la~~~~~-~v-~~~~  134 (156)
                      .++..+|+|.++...+..  .+    .+.+.+     .||++||+|| |+||++|+ .+.|.|.++++++.+ ++ .++.
T Consensus         4 ~~G~~aP~f~l~~~~~g~~~~v----~l~~~~-----~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~   74 (241)
T 1nm3_A            4 MEGKKVPQVTFRTRQGDKWVDV----TTSELF-----DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILV   74 (241)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEE----EHHHHH-----TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCCCCCeEEEcccCCCceee----cHHHHh-----CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
Confidence            356667777766531111  33    233322     4899999999 99999999 999999999998864 69 9999


Q ss_pred             EECCCC---HHHHHHhCCc
Q 031608          135 VDVNKV---SKDLVKRGNI  150 (156)
Q Consensus       135 vd~d~~---~~l~~~~~i~  150 (156)
                      |+.|..   .+.++++++.
T Consensus        75 is~d~~~~~~~~~~~~~~~   93 (241)
T 1nm3_A           75 VSVNDTFVMNAWKEDEKSE   93 (241)
T ss_dssp             EESSCHHHHHHHHHHTTCT
T ss_pred             EEcCCHHHHHHHHHhcCCC
Confidence            999763   2334555553

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=98.94  E-value=6.4e-10  Score=81.92  Aligned_cols=80  Identities=11%  Similarity=0.133  Sum_probs=55.0

Q ss_pred             hhccccCCCCCCCcc---ce-----EecCChhhHHHHHHHhhcCCC-cEEEEEeCCCChhHHhh-hHHHHHHHHHhcC-C
Q 031608           61 RVEALWPDLSRPTSV---EL-----EPINDSDHLDQILLRAQELSQ-PILIDWMASWCRKCIYL-KPKLEKLAAEFDT-K  129 (156)
Q Consensus        61 ~~~~~~~~~~~p~~~---~~-----~~i~~~~~~~~~l~~a~~~~k-~vlV~F~A~WC~~Ck~~-~p~l~~la~~~~~-~  129 (156)
                      .++..+|+|.++...   ..     ..+    .+.+++     .|+ ++|++|||+||++|+.+ .|.|.++++++.+ +
T Consensus         8 ~~g~~aP~f~l~~~~~~~~G~~~~~~~v----~l~~~~-----~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g   78 (171)
T 2pwj_A            8 DILSAASNVSLQKARTWDEGVESKFSTT----PVNDIF-----KDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKG   78 (171)
T ss_dssp             --CCCSSSBCCCSCEECCCSSCTTCCCE----EHHHHH-----TTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTT
T ss_pred             cccCcCCCeEEecccccccCCccCcceE----EHHHHh-----CCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence            345577888887641   11     223    233332     364 67889999999999999 9999999988853 5


Q ss_pred             eE-EEEEECCCC---HHHHHHhCC
Q 031608          130 LK-FYYVDVNKV---SKDLVKRGN  149 (156)
Q Consensus       130 v~-~~~vd~d~~---~~l~~~~~i  149 (156)
                      +. ++.|+.++.   ...++++++
T Consensus        79 ~~~vv~Is~d~~~~~~~~~~~~~~  102 (171)
T 2pwj_A           79 VDSVICVAINDPYTVNAWAEKIQA  102 (171)
T ss_dssp             CSEEEEEESSCHHHHHHHHHHTTC
T ss_pred             CCEEEEEeCCCHHHHHHHHHHhCC
Confidence            88 999999753   334556665

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=98.93  E-value=8.4e-10  Score=82.63  Aligned_cols=82  Identities=11%  Similarity=0.136  Sum_probs=57.4

Q ss_pred             chhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCc-EEEEEeCCCChhHHh-hhHHHHHHHHHhcC-CeE-EE
Q 031608           60 VRVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQP-ILIDWMASWCRKCIY-LKPKLEKLAAEFDT-KLK-FY  133 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~-vlV~F~A~WC~~Ck~-~~p~l~~la~~~~~-~v~-~~  133 (156)
                      +.++..+|+|.++..  .....+.    +.+.+     .|++ +|+.||++||++|+. +.|.|.+++++|.+ ++. ++
T Consensus        26 l~vG~~aPdf~l~~~~~~G~~~v~----L~d~~-----~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv   96 (184)
T 3uma_A           26 IAVGDKLPNATFKEKTADGPVEVT----TELLF-----KGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIA   96 (184)
T ss_dssp             CCTTCBCCCCEEEEEETTEEEEEE----HHHHH-----TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEE
T ss_pred             CCCCCCCCCcEeecccCCCceEEe----HHHHh-----CCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEE
Confidence            667788888887764  2224443    33322     4675 555667999999999 79999999999864 588 99


Q ss_pred             EEECCCC---HHHHHHhCCc
Q 031608          134 YVDVNKV---SKDLVKRGNI  150 (156)
Q Consensus       134 ~vd~d~~---~~l~~~~~i~  150 (156)
                      .|+.|+.   .+.++++++.
T Consensus        97 ~Is~d~~~~~~~f~~~~~~~  116 (184)
T 3uma_A           97 VVAVNDLHVMGAWATHSGGM  116 (184)
T ss_dssp             EEESSCHHHHHHHHHHHTCT
T ss_pred             EEECCCHHHHHHHHHHhCCC
Confidence            9999863   3445556654

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.92  E-value=1.5e-09  Score=81.49  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=38.5

Q ss_pred             CCCcEEEEEeCCCChh-HHhhhHHHHHHHHHhc----CCeEEEEEECCC
Q 031608           96 LSQPILIDWMASWCRK-CIYLKPKLEKLAAEFD----TKLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~-Ck~~~p~l~~la~~~~----~~v~~~~vd~d~  139 (156)
                      .|+++||+||++||++ |+.+.|.|.++.+++.    +++.++.|++|.
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~   88 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDP   88 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCT
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCC
Confidence            5899999999999998 9999999999877664    368999999873

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.92  E-value=1e-09  Score=83.41  Aligned_cols=73  Identities=8%  Similarity=-0.004  Sum_probs=54.9

Q ss_pred             cchhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEE
Q 031608           59 DVRVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYY  134 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~  134 (156)
                      .+.++..+|+|.++..  .....+... ++         .||++||+|| |+||++|..+.|.|.+++++|.+ ++.++.
T Consensus        18 ~~~~G~~aP~f~l~~~~~~~g~~v~l~-d~---------~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~   87 (211)
T 2pn8_A           18 LYFQSMPAPYWEGTAVIDGEFKELKLT-DY---------RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVA   87 (211)
T ss_dssp             -CCSSCBCCCCEEEEEETTEEEEEEGG-GG---------TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEE
T ss_pred             cCCCCCcCCCeEeecccCCCCcEEEHH-Hh---------CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            4556777788877642  122344322 33         5899999999 99999999999999999999964 699999


Q ss_pred             EECCCCH
Q 031608          135 VDVNKVS  141 (156)
Q Consensus       135 vd~d~~~  141 (156)
                      |++|...
T Consensus        88 Is~D~~~   94 (211)
T 2pn8_A           88 CSVDSQF   94 (211)
T ss_dssp             EESSCHH
T ss_pred             EECCCHH
Confidence            9997643

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.91  E-value=1.3e-09  Score=78.93  Aligned_cols=78  Identities=12%  Similarity=0.033  Sum_probs=57.4

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeC-CCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A-~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      +.++..+|++.++.. ....++.. ++         .||++||+||+ +||++|..+.|.|.++++++ .++.++.|+.|
T Consensus        16 ~~~G~~~P~f~l~~~-~G~~v~l~-~~---------~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d   83 (163)
T 1psq_A           16 LQVGDKALDFSLTTT-DLSKKSLA-DF---------DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMD   83 (163)
T ss_dssp             CCTTSBCCCCEEECT-TSCEEEGG-GG---------TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESS
T ss_pred             CCCCCCCCCEEEEcC-CCcEeeHH-Hh---------CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECC
Confidence            455667777776654 22333322 23         58999999995 99999999999999999988 67999999998


Q ss_pred             CCH---HHHHHhCC
Q 031608          139 KVS---KDLVKRGN  149 (156)
Q Consensus       139 ~~~---~l~~~~~i  149 (156)
                      ...   +.++++++
T Consensus        84 ~~~~~~~~~~~~~~   97 (163)
T 1psq_A           84 LPFAQKRWCGAEGL   97 (163)
T ss_dssp             CHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhcCC
Confidence            643   23455665

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.91  E-value=2e-09  Score=78.15  Aligned_cols=54  Identities=11%  Similarity=0.131  Sum_probs=44.0

Q ss_pred             CCCcEEEEEe-CCCChhHH-hhhHHHHHHHHHhc-CCeE-EEEEECCCCH---HHHHHhCC
Q 031608           96 LSQPILIDWM-ASWCRKCI-YLKPKLEKLAAEFD-TKLK-FYYVDVNKVS---KDLVKRGN  149 (156)
Q Consensus        96 ~~k~vlV~F~-A~WC~~Ck-~~~p~l~~la~~~~-~~v~-~~~vd~d~~~---~l~~~~~i  149 (156)
                      .||+++|+|| ++||++|. .+.|.|.++++++. .++. ++.|+.|...   +.++++++
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~   94 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPE   94 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCC
Confidence            5899999999 89999999 89999999999886 3688 9999987532   33445554

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.90  E-value=1.3e-09  Score=79.29  Aligned_cols=70  Identities=10%  Similarity=0.068  Sum_probs=53.6

Q ss_pred             cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      .+.++..+|++.++... ...+... ++         .||++||+|| ++||++|..+.|.|.++++++ .++.++.|+.
T Consensus        16 ~~~~G~~~P~f~l~~~~-G~~v~l~-~~---------~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~   83 (165)
T 1q98_A           16 FPQVGEIVENFILVGND-LADVALN-DF---------ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISA   83 (165)
T ss_dssp             CCCTTCBCCCCEEECTT-SCEEEGG-GG---------TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEES
T ss_pred             cCCCCCCCCCeEEECCC-CCEEehH-Hh---------CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeC
Confidence            34566777787776542 2333322 23         5899999999 899999999999999999999 6799999998


Q ss_pred             CCC
Q 031608          138 NKV  140 (156)
Q Consensus       138 d~~  140 (156)
                      |..
T Consensus        84 d~~   86 (165)
T 1q98_A           84 DLP   86 (165)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            753

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.90  E-value=2.7e-09  Score=81.21  Aligned_cols=42  Identities=19%  Similarity=0.081  Sum_probs=38.5

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .||++||+|||+||++| .+.|.|.+++++|.+ ++.++.|+++
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence            59999999999999999 789999999999975 5999999976

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.89  E-value=1.6e-09  Score=79.67  Aligned_cols=79  Identities=9%  Similarity=0.047  Sum_probs=55.6

Q ss_pred             hhccccCCCCCC-CccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHh-hhHHHHHHHHHhcC-Ce-EEEEE
Q 031608           61 RVEALWPDLSRP-TSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIY-LKPKLEKLAAEFDT-KL-KFYYV  135 (156)
Q Consensus        61 ~~~~~~~~~~~p-~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~-~~p~l~~la~~~~~-~v-~~~~v  135 (156)
                      .++..+|+|.++ .. ....+    .+.+++     .|++++|+|| |+||++|+. +.|.|.++++++.+ ++ .++.|
T Consensus         4 ~~G~~aP~f~l~~~~-~G~~v----~L~d~~-----~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~I   73 (167)
T 2wfc_A            4 KEGDKLPAVTVFGAT-PNDKV----NMAELF-----AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACM   73 (167)
T ss_dssp             CTTCBCCCCEEESSS-TTCEE----EHHHHT-----TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEE
T ss_pred             CCCCcCCCcEeecCC-CCcEE----eHHHHh-----CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence            456667777766 43 22233    233332     4888999886 999999999 99999999988853 69 99999


Q ss_pred             ECCCCH---HHHHHhCC
Q 031608          136 DVNKVS---KDLVKRGN  149 (156)
Q Consensus       136 d~d~~~---~l~~~~~i  149 (156)
                      +.|...   +.++++++
T Consensus        74 s~d~~~~~~~~~~~~~~   90 (167)
T 2wfc_A           74 AVNDSFVMDAWGKAHGA   90 (167)
T ss_dssp             ESSCHHHHHHHHHHTTC
T ss_pred             eCCCHHHHHHHHHhcCC
Confidence            997632   34555555

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.89  E-value=8.2e-11  Score=86.20  Aligned_cols=72  Identities=18%  Similarity=0.387  Sum_probs=56.3

Q ss_pred             cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD  136 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd  136 (156)
                      -+.+|..+|+|.+++. ....+    .+.++.    ..||++++.|| |+||++|..+.|.|.++.+++.+ ++.++.|+
T Consensus         4 ml~vG~~aPdF~l~~~-~G~~v----~Lsd~~----~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is   74 (164)
T 4gqc_A            4 LVELGEKAPDFTLPNQ-DFEPV----NLYEVL----KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAIS   74 (164)
T ss_dssp             CCCTTSBCCCCEEEBT-TSCEE----EHHHHH----HTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEE
T ss_pred             cccCCCCCcCcEeECC-CCCEE----EHHHHh----cCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEec
Confidence            3567888999988764 23333    344444    36899999998 99999999999999999888865 59999999


Q ss_pred             CCC
Q 031608          137 VNK  139 (156)
Q Consensus       137 ~d~  139 (156)
                      .|.
T Consensus        75 ~d~   77 (164)
T 4gqc_A           75 VDS   77 (164)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            875

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.88  E-value=1.1e-09  Score=84.13  Aligned_cols=72  Identities=10%  Similarity=0.053  Sum_probs=53.8

Q ss_pred             chhccccCCCCCCCcc-ce--EecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhc-CCeEEEE
Q 031608           60 VRVEALWPDLSRPTSV-EL--EPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYY  134 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~-~~--~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~-~~v~~~~  134 (156)
                      +.++..+|+|.++... ..  ..+...+ +        ..||++||+|| |+||++|+.+.|.|.+++++|. .++.++.
T Consensus        25 l~~G~~aP~F~l~~~~~~G~~~~v~L~d-~--------~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~   95 (221)
T 2c0d_A           25 SLVTKKAYNFTAQGLNKNNEIINVDLSS-F--------IGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLG   95 (221)
T ss_dssp             -CTTSBCCCCEEEEECTTSCEEEEEGGG-G--------TTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEE
T ss_pred             CCCCCCCCCeEEeccccCCCccEEeHHH-H--------cCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEE
Confidence            5567777888776531 12  3343222 2        15899999999 9999999999999999999985 3699999


Q ss_pred             EECCCC
Q 031608          135 VDVNKV  140 (156)
Q Consensus       135 vd~d~~  140 (156)
                      |++|..
T Consensus        96 Is~D~~  101 (221)
T 2c0d_A           96 ISVDSV  101 (221)
T ss_dssp             EESSCH
T ss_pred             EeCCCH
Confidence            999763

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.86  E-value=3.1e-09  Score=77.83  Aligned_cols=66  Identities=17%  Similarity=0.298  Sum_probs=49.3

Q ss_pred             hccccC-CCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCCh-hHHhhhHHHHHHHHHhc---CCeEEEEEE
Q 031608           62 VEALWP-DLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCR-KCIYLKPKLEKLAAEFD---TKLKFYYVD  136 (156)
Q Consensus        62 ~~~~~~-~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~-~Ck~~~p~l~~la~~~~---~~v~~~~vd  136 (156)
                      ++..+| +|.++.. ....+... ++         .||++||+||++||+ .|..+.|.+.++.+++.   .++.++.|+
T Consensus         3 ~G~~~P~~f~l~d~-~G~~v~l~-~~---------~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is   71 (170)
T 3me7_A            3 LGTYVPGDITLVDS-YGNEFQLK-NL---------KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFT   71 (170)
T ss_dssp             TTCBCCTTCEEEET-TCCEEEGG-GG---------TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEE
T ss_pred             CCCcCCCCeEEEcC-CcCEEchH-Hh---------CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEE
Confidence            455666 6666543 22333322 33         489999999999997 69999999999999985   358999998


Q ss_pred             CC
Q 031608          137 VN  138 (156)
Q Consensus       137 ~d  138 (156)
                      +|
T Consensus        72 ~d   73 (170)
T 3me7_A           72 FD   73 (170)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.86  E-value=1.9e-09  Score=78.63  Aligned_cols=78  Identities=12%  Similarity=-0.021  Sum_probs=55.7

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      +.++...|++.++.. ....++.. ++         .|++++|+|| ++||++|..+.|.+.++.+++ .++.++.|+.|
T Consensus        21 l~~g~~~P~f~l~~~-~G~~~~l~-~~---------~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d   88 (171)
T 2yzh_A           21 LKVGDRAPEAVVVTK-DLQEKIVG-GA---------KDVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMD   88 (171)
T ss_dssp             CCTTSBCCCEEEEET-TSCEEEES-SC---------CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESS
T ss_pred             CCCCCcCCceEEECC-CCCEeeHH-Hh---------CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCC
Confidence            445666666665543 12222212 22         5899999999 899999999999999999988 67999999998


Q ss_pred             CCH---HHHHHhCC
Q 031608          139 KVS---KDLVKRGN  149 (156)
Q Consensus       139 ~~~---~l~~~~~i  149 (156)
                      ...   +.++++++
T Consensus        89 ~~~~~~~~~~~~~~  102 (171)
T 2yzh_A           89 LPFAQKRFCESFNI  102 (171)
T ss_dssp             CHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHcCC
Confidence            643   33455655

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.85  E-value=1.1e-09  Score=82.96  Aligned_cols=45  Identities=16%  Similarity=0.428  Sum_probs=41.6

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKV  140 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~~  140 (156)
                      .++++||+||+.|||||+.+.|.+   +++++++++++.|.+++++.+
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            468999999999999999999999   999999988899999999864

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=98.83  E-value=3.5e-09  Score=78.50  Aligned_cols=86  Identities=10%  Similarity=0.106  Sum_probs=57.1

Q ss_pred             cccccchhccccCCCCCC-CccceEecCChhhHHHHHHHhhcCCCcEEE-EEeCCCChhHH-hhhHHHHHHHHHhcC-Ce
Q 031608           55 SARRDVRVEALWPDLSRP-TSVELEPINDSDHLDQILLRAQELSQPILI-DWMASWCRKCI-YLKPKLEKLAAEFDT-KL  130 (156)
Q Consensus        55 ~~~r~~~~~~~~~~~~~p-~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV-~F~A~WC~~Ck-~~~p~l~~la~~~~~-~v  130 (156)
                      +......++..+|+|.++ .. ....+.    +.+.+     .|++++| +|||+||++|. .+.|.|.+++++|.+ ++
T Consensus        10 ~~~~~~~vG~~aPdf~l~~~~-~g~~v~----L~d~~-----~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv   79 (173)
T 3mng_A           10 HGSAPIKVGDAIPAVEVFEGE-PGNKVN----LAELF-----KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGV   79 (173)
T ss_dssp             ---CCCCTTCBCCCCEEECSS-TTCEEE----HHHHT-----TTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTC
T ss_pred             CCCCCCCCCCCCCCeEeeeCC-CCCEEE----hHHHh-----CCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence            455667788889999887 43 233342    32322     4776555 55699999999 599999999999864 58


Q ss_pred             EEEE-EECCCC---HHHHHHhCCc
Q 031608          131 KFYY-VDVNKV---SKDLVKRGNI  150 (156)
Q Consensus       131 ~~~~-vd~d~~---~~l~~~~~i~  150 (156)
                      .++. |+.|..   .+.++++++.
T Consensus        80 ~vv~~iS~D~~~~~~~f~~~~~~~  103 (173)
T 3mng_A           80 QVVACLSVNDAFVTGEWGRAHKAE  103 (173)
T ss_dssp             CEEEEEESSCHHHHHHHHHHTTCT
T ss_pred             EEEEEEcCCCHHHHHHHHHHhCCC
Confidence            8886 888752   3445555553

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.82  E-value=4e-09  Score=78.37  Aligned_cols=45  Identities=7%  Similarity=-0.006  Sum_probs=40.2

Q ss_pred             CCCcEEEEEeC-CCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC
Q 031608           96 LSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV  140 (156)
Q Consensus        96 ~~k~vlV~F~A-~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~  140 (156)
                      .||++||+||+ +||++|+.+.|.|.++++++.+ ++.++.|+.|..
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~   75 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTH   75 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCH
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence            48999999995 9999999999999999998864 699999999863

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.81  E-value=5.3e-09  Score=77.17  Aligned_cols=68  Identities=9%  Similarity=-0.044  Sum_probs=53.0

Q ss_pred             hhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        61 ~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .++..+|+|.++.. ....+... +|         .||++||+|| ++||++|....|.|.+++++|.+ ++.++.|+.|
T Consensus        26 ~ig~~aP~f~l~~~-~G~~v~l~-d~---------~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D   94 (179)
T 3ixr_A           26 TLNHSLLNHPLMLS-GSTCKTLS-DY---------TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRD   94 (179)
T ss_dssp             BCCHHHHHCCEEEG-GGEEECGG-GG---------TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESC
T ss_pred             ccCCcCCCeeEECC-CCCEEeHH-HH---------CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            33444788887764 33455433 33         5889999998 99999999999999999999965 5999999987


Q ss_pred             C
Q 031608          139 K  139 (156)
Q Consensus       139 ~  139 (156)
                      .
T Consensus        95 ~   95 (179)
T 3ixr_A           95 S   95 (179)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.81  E-value=5.8e-09  Score=75.70  Aligned_cols=79  Identities=11%  Similarity=0.064  Sum_probs=57.9

Q ss_pred             ccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcCCeEEEEEE
Q 031608           58 RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD  136 (156)
Q Consensus        58 r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd  136 (156)
                      ..+.++..+|+|.++... ...+... ++         .||+++|+|| ++||++|....|.|.+++++  .++.++.|+
T Consensus        18 ~~l~~G~~aP~f~l~~~~-G~~~~l~-~~---------~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~~~~vv~is   84 (166)
T 3p7x_A           18 QQINEGDFAPDFTVLDND-LNQVTLA-DY---------AGKKKLISVVPSIDTGVCDQQTRKFNSDASK--EEGIVLTIS   84 (166)
T ss_dssp             CCCCTTSBCCCCEEECTT-SCEEEGG-GG---------TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT--TTSEEEEEE
T ss_pred             ccCCCCCCCCCeEEEcCC-CCEEeHH-Hh---------CCCcEEEEEECCCCCCccHHHHHHHHHHhhc--CCCEEEEEE
Confidence            345667788888877642 2333322 33         5899999999 78999999999999999877  469999999


Q ss_pred             CCCCH---HHHHHhCC
Q 031608          137 VNKVS---KDLVKRGN  149 (156)
Q Consensus       137 ~d~~~---~l~~~~~i  149 (156)
                      .|...   +.++++++
T Consensus        85 ~d~~~~~~~~~~~~~~  100 (166)
T 3p7x_A           85 ADLPFAQKRWCASAGL  100 (166)
T ss_dssp             SSCHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHcCC
Confidence            88643   33556665

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.79  E-value=8.7e-09  Score=75.63  Aligned_cols=74  Identities=15%  Similarity=0.262  Sum_probs=52.4

Q ss_pred             hccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCCh-hHHhhhHHHHHHHHHhc---CCeEEEEEEC
Q 031608           62 VEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCR-KCIYLKPKLEKLAAEFD---TKLKFYYVDV  137 (156)
Q Consensus        62 ~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~-~Ck~~~p~l~~la~~~~---~~v~~~~vd~  137 (156)
                      ++.+.|+|.++.. ....++ ..+|         .||++||+||++||+ +|....+.+.++.+.++   .++.++.|++
T Consensus         8 ~~~~~PdF~L~d~-~G~~v~-l~d~---------~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isv   76 (170)
T 4hde_A            8 LNWDLETFQFTNQ-DGKPFG-TKDL---------KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSV   76 (170)
T ss_dssp             CCBCCCCCEEECT-TSCEEE-HHHH---------TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred             CCCcCCCcEEECC-CCCEEe-HHHh---------CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeec
Confidence            3556677777664 334443 2234         599999999999996 79999999988877663   3588888888


Q ss_pred             C---CCHHHHHH
Q 031608          138 N---KVSKDLVK  146 (156)
Q Consensus       138 d---~~~~l~~~  146 (156)
                      |   +.++.+++
T Consensus        77 Dp~~Dtp~~l~~   88 (170)
T 4hde_A           77 DPDLDKPENLKA   88 (170)
T ss_dssp             CTTTCCHHHHHH
T ss_pred             CcccccHHHHHH
Confidence            6   34554443

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.79  E-value=6.5e-09  Score=74.73  Aligned_cols=70  Identities=13%  Similarity=0.110  Sum_probs=49.7

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV  137 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~  137 (156)
                      +.++..+|++.+++.. ...+    .+.++.    ..++++||+|| ++||++|+.+.|.|.++++++.+ + .++.|+.
T Consensus         7 ~~~G~~~P~f~l~~~~-G~~v----~l~~~~----gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~   76 (159)
T 2a4v_A            7 LEIGDPIPDLSLLNED-NDSI----SLKKIT----ENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSA   76 (159)
T ss_dssp             CCTTCBCCSCEEECTT-SCEE----EHHHHH----HHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             CCCCCCCCCeEEECCC-CCEE----eHHHHh----CCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeC
Confidence            4556677777666532 2233    233333    12348999987 99999999999999999999874 5 8888888


Q ss_pred             CC
Q 031608          138 NK  139 (156)
Q Consensus       138 d~  139 (156)
                      |.
T Consensus        77 d~   78 (159)
T 2a4v_A           77 DS   78 (159)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.78  E-value=8.8e-09  Score=79.96  Aligned_cols=73  Identities=10%  Similarity=0.100  Sum_probs=56.4

Q ss_pred             cchhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEeC-CCChhHHhhhHHHHHHHHHhcC-CeEEEE
Q 031608           59 DVRVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFDT-KLKFYY  134 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A-~WC~~Ck~~~p~l~~la~~~~~-~v~~~~  134 (156)
                      .+.++..+|+|.+++.  .+...+... +|         .||++||+||+ +||++|..+.|.|.+++++|.+ ++.++.
T Consensus        47 ~l~vG~~aPdF~l~~~~d~~G~~vsLs-d~---------~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~  116 (240)
T 3qpm_A           47 KAKISKPAPQWEGTAVINGEFKELKLS-DY---------RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVA  116 (240)
T ss_dssp             SCCTTSBCCCCEEEEEETTEEEEEEGG-GG---------TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred             cCCCCCCCCCcEeeeeeCCCCcEEEHH-Hh---------CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEE
Confidence            4567888888887643  122344323 33         58999999999 9999999999999999999974 699999


Q ss_pred             EECCCCH
Q 031608          135 VDVNKVS  141 (156)
Q Consensus       135 vd~d~~~  141 (156)
                      |++|...
T Consensus       117 Is~D~~~  123 (240)
T 3qpm_A          117 CSVDSQF  123 (240)
T ss_dssp             EESSCHH
T ss_pred             EECCCHH
Confidence            9998643

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.77  E-value=5.8e-09  Score=70.18  Aligned_cols=52  Identities=15%  Similarity=0.192  Sum_probs=40.0

Q ss_pred             EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC-------HHHHHHhCCcccee
Q 031608          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-------SKDLVKRGNISVSI  154 (156)
Q Consensus       100 vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~-------~~l~~~~~i~sv~~  154 (156)
                      .++.|+++|||+|+++.|.|+++...+++   +..+|++.+       .++.+.+|+.++|+
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~~---~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~   71 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEGL---LEFVDITATSDTNEIQDYLQQLTGARTVPR   71 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTTS---EEEEEGGGSTTHHHHHHHHHHHHSCCCSCE
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCCc---cEEEEccCCCCHHHHHHHHHHHhCCCCcCe
Confidence            36679999999999999999987655442   555676654       35778899999986

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.77  E-value=6e-09  Score=78.57  Aligned_cols=71  Identities=11%  Similarity=0.069  Sum_probs=54.6

Q ss_pred             cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      .+.++..+|+|.+++.. ...+... ++         .||+++|+|| ++||++|..+.|.|.++++++ .++.++.|+.
T Consensus        51 ~l~~G~~aPdf~l~d~~-G~~v~L~-d~---------~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~~v~vv~Is~  118 (200)
T 3zrd_A           51 LPQIGDKAKDFTLVAKD-LSDVALS-SF---------AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-ENTVVLCISS  118 (200)
T ss_dssp             CCCTTCBCCCCEEECTT-SCEEEGG-GG---------TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-TTEEEEEEES
T ss_pred             cCCCCCCCCCeEEECCC-CCEEcHH-Hh---------CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-CCCEEEEEEC
Confidence            45667777888776642 2333322 33         5899999999 789999999999999999999 5699999999


Q ss_pred             CCCH
Q 031608          138 NKVS  141 (156)
Q Consensus       138 d~~~  141 (156)
                      |...
T Consensus       119 D~~~  122 (200)
T 3zrd_A          119 DLPF  122 (200)
T ss_dssp             SCHH
T ss_pred             CCHH
Confidence            8543

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.74  E-value=1.1e-08  Score=74.55  Aligned_cols=41  Identities=10%  Similarity=0.250  Sum_probs=35.7

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      +++++|+.||.+|||+|+.+.|.++++.+++++ +.++..++
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~   61 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREW   61 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEEC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeC
Confidence            578999999999999999999999999998875 66666663

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.74  E-value=1.6e-08  Score=64.74  Aligned_cols=48  Identities=17%  Similarity=0.342  Sum_probs=39.9

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHH---HhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV---KRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~---~~~i~sv~~  154 (156)
                      ++.|+++||++|+++.+.|++.      ++.+..+|+++++++.+   ++|+.++|+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~   53 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPV   53 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCE
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhCCCccCE
Confidence            6779999999999999998863      37788899998876654   589999886

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=98.70  E-value=2.7e-08  Score=76.43  Aligned_cols=70  Identities=21%  Similarity=0.354  Sum_probs=52.5

Q ss_pred             cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCC--cEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEE
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQ--PILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYV  135 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k--~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~v  135 (156)
                      .+.++..+|+|.+++...  .++    +.+..      |+  .+|+.|||+||++|..+.|.|.+++++|.+ ++.++.|
T Consensus         4 ~l~~G~~aP~F~l~~~~G--~v~----l~d~~------Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~I   71 (224)
T 1prx_A            4 GLLLGDVAPNFEANTTVG--RIR----FHDFL------GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIAL   71 (224)
T ss_dssp             -CCTTCBCCCCEEEETTE--EEE----HHHHH------TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEE
T ss_pred             cCCCcCCCCCcEEecCCC--CEE----HHHHc------CCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            456677788887765433  342    33333      55  567777999999999999999999999965 6999999


Q ss_pred             ECCCC
Q 031608          136 DVNKV  140 (156)
Q Consensus       136 d~d~~  140 (156)
                      ++|..
T Consensus        72 S~D~~   76 (224)
T 1prx_A           72 SIDSV   76 (224)
T ss_dssp             ESSCH
T ss_pred             cCCCH
Confidence            99864

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.67  E-value=3.8e-08  Score=61.74  Aligned_cols=49  Identities=16%  Similarity=0.291  Sum_probs=41.0

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHH---HhCCccceec
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV---KRGNISVSIQ  155 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~---~~~i~sv~~~  155 (156)
                      ++.|+++||++|++..+.++++      ++.+..+|+++++++..   ++|+.++|+-
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l   54 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVV   54 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEE
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcCCCccCEE
Confidence            5779999999999999999864      37788899998877665   7999998863

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.66  E-value=1.8e-08  Score=76.75  Aligned_cols=38  Identities=13%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEE
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD  136 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd  136 (156)
                      +++++|+.||++|||+|++++|.++++.+.   ++.++.+.
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~  122 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLA  122 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEE
Confidence            578999999999999999999999998763   35555543

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.66  E-value=1.7e-08  Score=79.19  Aligned_cols=73  Identities=8%  Similarity=0.071  Sum_probs=55.8

Q ss_pred             cchhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEE
Q 031608           59 DVRVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYY  134 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~  134 (156)
                      .+.++..+|+|.++..  .+...+... +|         .||++||+|| ++||++|..+.|.|.+++++|.+ ++.++.
T Consensus        61 ~l~vG~~aPdF~l~~l~d~~G~~vsLs-d~---------kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~  130 (254)
T 3tjj_A           61 KAKISKPAPYWEGTAVIDGEFKELKLT-DY---------RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVA  130 (254)
T ss_dssp             CCCTTSBCCCCEEEEEETTEEEEEEGG-GG---------TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEE
T ss_pred             ccCCCCCCCCcEeeeecCCCCcEEeHH-HH---------CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEE
Confidence            4556777888876643  123344322 33         5899999999 99999999999999999999964 699999


Q ss_pred             EECCCCH
Q 031608          135 VDVNKVS  141 (156)
Q Consensus       135 vd~d~~~  141 (156)
                      |++|...
T Consensus       131 IS~D~~~  137 (254)
T 3tjj_A          131 CSVDSQF  137 (254)
T ss_dssp             EESSCHH
T ss_pred             EcCCCHH
Confidence            9998643

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=5.8e-08  Score=68.49  Aligned_cols=61  Identities=11%  Similarity=0.285  Sum_probs=44.8

Q ss_pred             ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC---HH----HHHHhCCcccee
Q 031608           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SK----DLVKRGNISVSI  154 (156)
Q Consensus        82 ~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~---~~----l~~~~~i~sv~~  154 (156)
                      ..+.+++++.    .+ .++| |+++||++|+++.+.|+++.      +.+..+|++..   ++    +++.+|+.++|+
T Consensus        16 ~~~~~~~~i~----~~-~vvv-f~~~~Cp~C~~~~~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~   83 (130)
T 2cq9_A           16 PVNQIQETIS----DN-CVVI-FSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPR   83 (130)
T ss_dssp             HHHHHHHHHH----HS-SEEE-EECSSCSHHHHHHHHHHHHT------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSE
T ss_pred             HHHHHHHHHc----CC-cEEE-EEcCCChHHHHHHHHHHHcC------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCE
Confidence            3456777774    23 4444 99999999999999998863      45566777655   43    778899999986

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.62  E-value=2.3e-08  Score=78.42  Aligned_cols=70  Identities=14%  Similarity=0.230  Sum_probs=51.9

Q ss_pred             chhccccCCCCCCCccceEecCChhhH-HHHHHHhhcCCCc-EEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHL-DQILLRAQELSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD  136 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~-~~~l~~a~~~~k~-vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd  136 (156)
                      +.++..+|+|.+++..+  .++    + .+.+    ..|++ ||++|||+||++|..+.|.|.+++++|.+ ++.++.|+
T Consensus         5 ~~iG~~aPdF~l~~~~G--~v~----l~~d~l----~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS   74 (249)
T 3a2v_A            5 PLIGERFPEMEVTTDHG--VIK----LPDHYV----SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLS   74 (249)
T ss_dssp             CCTTSBCCCEEEEETTE--EEE----ETHHHH----TTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEE
T ss_pred             CCCCCCCCCeEEEcCCC--CEe----cHHHHh----hCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence            35667777777665433  332    2 3333    25786 56688999999999999999999999864 69999999


Q ss_pred             CCC
Q 031608          137 VNK  139 (156)
Q Consensus       137 ~d~  139 (156)
                      +|.
T Consensus        75 ~Ds   77 (249)
T 3a2v_A           75 VDS   77 (249)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            975

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.61  E-value=6.8e-08  Score=71.74  Aligned_cols=44  Identities=16%  Similarity=0.295  Sum_probs=40.7

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      .++++|+.||++|||+|+.+.|.++++.+++++++.|..++++-
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~~   67 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIAF   67 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCS
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEeccc
Confidence            47899999999999999999999999999998789999999863

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.58  E-value=1.5e-08  Score=69.76  Aligned_cols=54  Identities=15%  Similarity=0.124  Sum_probs=41.5

Q ss_pred             CcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH-------HHHHHhCCcccee
Q 031608           98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-------KDLVKRGNISVSI  154 (156)
Q Consensus        98 k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~-------~l~~~~~i~sv~~  154 (156)
                      ...++.|+++|||+|+++.+.|+++...++ +  +..+|++.++       ++++.+|+.++|+
T Consensus        18 ~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~-~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~   78 (114)
T 2hze_A           18 NNKVTIFVKYTCPFCRNALDILNKFSFKRG-A--YEIVDIKEFKPENELRDYFEQITGGKTVPR   78 (114)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHTTSCBCTT-S--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCE
T ss_pred             cCCEEEEEeCCChhHHHHHHHHHHcCCCcC-c--eEEEEccCCCChHHHHHHHHHHhCCCCcCE
Confidence            445777999999999999999887532221 1  7778887664       7788899999985

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.57  E-value=1.2e-07  Score=68.42  Aligned_cols=62  Identities=11%  Similarity=0.279  Sum_probs=45.4

Q ss_pred             CChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC---HH----HHHHhCCccce
Q 031608           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SK----DLVKRGNISVS  153 (156)
Q Consensus        81 ~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~---~~----l~~~~~i~sv~  153 (156)
                      ...+.+++++.    .+ .++| |+++||++|+++.+.|+++.      +.+..+|++..   ++    +++.+|+.++|
T Consensus        37 ~~~~~~~~~i~----~~-~Vvv-f~~~~Cp~C~~~k~~L~~~~------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP  104 (146)
T 2ht9_A           37 APVNQIQETIS----DN-CVVI-FSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVP  104 (146)
T ss_dssp             CCHHHHHHHHH----HC-SEEE-EECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSC
T ss_pred             HHHHHHHHHhc----CC-CEEE-EECCCChhHHHHHHHHHHcC------CCeEEEECccCcCCHHHHHHHHHHhCCCCcC
Confidence            34567888774    23 4444 99999999999999998863      44556677644   43    77889999998


Q ss_pred             e
Q 031608          154 I  154 (156)
Q Consensus       154 ~  154 (156)
                      +
T Consensus       105 ~  105 (146)
T 2ht9_A          105 R  105 (146)
T ss_dssp             E
T ss_pred             e
Confidence            6

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.57  E-value=6.5e-08  Score=74.92  Aligned_cols=69  Identities=9%  Similarity=0.205  Sum_probs=52.4

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCC-cEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQ-PILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD  136 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k-~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd  136 (156)
                      +.++..+|+|.+++...  .+    .+.+..      |+ ++|+.|| |+||++|..+.|.|.++++++.+ ++.++.|+
T Consensus         3 l~iG~~aPdF~l~~~~G--~v----~l~d~~------Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS   70 (233)
T 2v2g_A            3 ITLGEVFPNFEADSTIG--KL----KFHDWL------GNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALS   70 (233)
T ss_dssp             CCTTCBCCCCEEEETTC--CE----EHHHHH------CSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEE
T ss_pred             CCCCCCCCCcEEecCCC--CE----EHHHHC------CCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence            34566777777665433  33    233333      55 8999998 99999999999999999998864 69999999


Q ss_pred             CCCC
Q 031608          137 VNKV  140 (156)
Q Consensus       137 ~d~~  140 (156)
                      +|..
T Consensus        71 ~D~~   74 (233)
T 2v2g_A           71 CDNV   74 (233)
T ss_dssp             SSCH
T ss_pred             CCCH
Confidence            9864

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.52  E-value=9.8e-08  Score=73.07  Aligned_cols=69  Identities=17%  Similarity=0.258  Sum_probs=50.8

Q ss_pred             chhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCC--cEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEE
Q 031608           60 VRVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQ--PILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYY  134 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k--~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~  134 (156)
                      +.++..+|+|.+++.  ..  .++    +.+.      .|+  .+|+.|||+||++|..+.|.|.+++++|.+ ++.++.
T Consensus         3 l~iG~~aP~F~l~~~~~~G--~v~----l~d~------~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~   70 (220)
T 1xcc_A            3 YHLGATFPNFTAKASGIDG--DFE----LYKY------IENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIG   70 (220)
T ss_dssp             CCTTCBCCCCEECBTTCSS--CEE----HHHH------TTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEE
T ss_pred             CCCCCCCCCcEeecccCCC--cEe----HHHH------cCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence            346677788877654  32  332    2222      366  555666999999999999999999999965 699999


Q ss_pred             EECCCC
Q 031608          135 VDVNKV  140 (156)
Q Consensus       135 vd~d~~  140 (156)
                      |++|..
T Consensus        71 vS~D~~   76 (220)
T 1xcc_A           71 FSCNSK   76 (220)
T ss_dssp             EESSCH
T ss_pred             EeCCCH
Confidence            999863

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.48  E-value=1.9e-07  Score=69.80  Aligned_cols=45  Identities=20%  Similarity=0.380  Sum_probs=41.1

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV  140 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~  140 (156)
                      .++++||.|++.|||+|+.+.|.++++.+++++++.|..++++-.
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~~~   67 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQ   67 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEECCCS
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecCCCC
Confidence            478999999999999999999999999999988899999998643

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.44  E-value=2.1e-07  Score=70.61  Aligned_cols=37  Identities=16%  Similarity=0.354  Sum_probs=30.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEE
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV  135 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~v  135 (156)
                      +++++|+.||++|||+|++++|.++++.+.   ++.+..+
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~---~v~v~~~  121 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL---GITVRYL  121 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEE
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC---CcEEEEE
Confidence            578899999999999999999999997652   3555544

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.43  E-value=9.2e-08  Score=66.40  Aligned_cols=63  Identities=16%  Similarity=0.275  Sum_probs=45.5

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhh-hHHHHHHHHHhcCCeEEEEEECCCCH-------HHHHHhCCcccee
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYL-KPKLEKLAAEFDTKLKFYYVDVNKVS-------KDLVKRGNISVSI  154 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~-~p~l~~la~~~~~~v~~~~vd~d~~~-------~l~~~~~i~sv~~  154 (156)
                      .+.+++++.    ..+  ++.|+++|||+|++. .+.|+++..   ..+.+..+|++.++       ++.+.+|+.++|+
T Consensus        15 ~~~~~~~i~----~~~--Vvvf~~~~Cp~C~~alk~~L~~~~~---~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~   85 (118)
T 3c1r_A           15 IKHVKDLIA----ENE--IFVASKTYCPYCHAALNTLFEKLKV---PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPN   85 (118)
T ss_dssp             HHHHHHHHH----HSS--EEEEECSSCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCE
T ss_pred             HHHHHHHHc----cCc--EEEEEcCCCcCHHHHHHHHHHHcCC---CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCE
Confidence            345666663    233  555999999999999 888876541   23778888887653       5778899999985

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.41  E-value=6.1e-07  Score=60.65  Aligned_cols=59  Identities=8%  Similarity=0.116  Sum_probs=43.2

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEeC-----CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHhCCcccee
Q 031608           84 DHLDQILLRAQELSQPILIDWMA-----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD----LVKRGNISVSI  154 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~A-----~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~~~i~sv~~  154 (156)
                      +.+++++    ..+ +|+| |++     +|||+|++..+.|+++      ++.+..+|+++++++    ...+|+.++|+
T Consensus         8 ~~~~~~i----~~~-~vvv-f~~g~~~~~~C~~C~~~~~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~   75 (105)
T 2yan_A            8 ERLKVLT----NKA-SVML-FMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKAYSNWPTYPQ   75 (105)
T ss_dssp             HHHHHHH----TSS-SEEE-EESBCSSSBCTTHHHHHHHHHHHH------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCE
T ss_pred             HHHHHHh----ccC-CEEE-EEecCCCCCCCccHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHHHCCCCCCe
Confidence            3455555    333 4555 777     9999999999999876      267888999887764    44578888875

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.38  E-value=6e-07  Score=66.37  Aligned_cols=43  Identities=9%  Similarity=0.257  Sum_probs=39.2

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      +++++|+.||+.|||+|+.+.|.+.++.+++++++.|..+.+.
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~   66 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPAL   66 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehh
Confidence            4789999999999999999999999999999878888888774

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=98.34  E-value=4.1e-07  Score=70.25  Aligned_cols=78  Identities=13%  Similarity=0.060  Sum_probs=56.2

Q ss_pred             ccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCC-ChhHH-----hhhHHHHHHHHHhcCCeE
Q 031608           58 RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASW-CRKCI-----YLKPKLEKLAAEFDTKLK  131 (156)
Q Consensus        58 r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~W-C~~Ck-----~~~p~l~~la~~~~~~v~  131 (156)
                      ..+.++..+|+|.++.. ....+... +|         .|+++||+||++| |++|.     .+.|.|.++   + .++.
T Consensus        20 ~~l~vG~~APdFtL~d~-~G~~vsLs-d~---------~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~-~gv~   84 (224)
T 3keb_A           20 DFPRKGDYLPSFMLVDD-QKHDAALE-SF---------SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W-PHLK   84 (224)
T ss_dssp             CCCCTTCBCCCCEEEET-TSCEEEGG-GG---------TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C-TTSE
T ss_pred             CcCCCCCCCCCeEEECC-CCCEEeHH-Hh---------CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c-CCCE
Confidence            34667888889988754 23344323 23         5899999999999 99999     888888877   5 4589


Q ss_pred             EEEEECCCC---HHHHHHhCCc
Q 031608          132 FYYVDVNKV---SKDLVKRGNI  150 (156)
Q Consensus       132 ~~~vd~d~~---~~l~~~~~i~  150 (156)
                      ++.|+.|..   ...++++++.
T Consensus        85 VvgIS~Ds~~~~~~f~~~~gl~  106 (224)
T 3keb_A           85 LIVITVDSPSSLARARHEHGLP  106 (224)
T ss_dssp             EEEEESSCHHHHHHHHHHHCCT
T ss_pred             EEEEECCCHHHHHHHHHHcCCC
Confidence            999998752   3445566663

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.33  E-value=3e-07  Score=68.49  Aligned_cols=44  Identities=9%  Similarity=0.372  Sum_probs=38.4

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~  139 (156)
                      .++++||.|++.|||+|+.+.|.+   +++.+.+++++.|+.+++.-
T Consensus        13 ~~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   59 (189)
T 3l9v_A           13 VDAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSL   59 (189)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSS
T ss_pred             CCCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechh
Confidence            357899999999999999999987   68888888779999998864

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=98.32  E-value=1.4e-06  Score=58.70  Aligned_cols=52  Identities=13%  Similarity=0.112  Sum_probs=41.0

Q ss_pred             CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHh-----CCcccee
Q 031608           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR-----GNISVSI  154 (156)
Q Consensus        97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~-----~i~sv~~  154 (156)
                      .+.-++.|+++||+.|++.++.|+++      ++.+..+|++.+++...++     |..++|+
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~------~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~   70 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRK------GVEFQEYCIDGDNEAREAMAARANGKRSLPQ   70 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHH------TCCCEEEECTTCHHHHHHHHHHTTTCCCSCE
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHC------CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCE
Confidence            44456679999999999999999875      3667889998887665544     8888875

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.31  E-value=4.7e-07  Score=59.04  Aligned_cols=49  Identities=16%  Similarity=0.249  Sum_probs=40.2

Q ss_pred             EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC--CCHHHHHHh-CCcccee
Q 031608          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN--KVSKDLVKR-GNISVSI  154 (156)
Q Consensus       100 vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d--~~~~l~~~~-~i~sv~~  154 (156)
                      .++.|+++||++|++..+.|++.      ++.+..+|++  ..+++.+.+ ++.++|+
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~------~i~~~~vdv~~~~~~~l~~~~~~~~~vP~   58 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK------GVKYTDIDASTSLRQEMVQRANGRNTFPQ   58 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH------TCCEEEECSCHHHHHHHHHHHHSSCCSCE
T ss_pred             eEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCHHHHHHHHHHhCCCCCcCE
Confidence            36779999999999999999875      2567788888  556778888 9999886

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=98.26  E-value=1.4e-06  Score=66.93  Aligned_cols=70  Identities=6%  Similarity=0.152  Sum_probs=57.5

Q ss_pred             chhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEE
Q 031608           60 VRVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYV  135 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~v  135 (156)
                      +.++..+|+|.++..  ....++... +|         .||++|+.|| ++||+.|..+.+.|.+.+.++.. ++.++.|
T Consensus        23 ~~VG~~APdF~l~a~~d~~~~~vsLs-d~---------~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigi   92 (216)
T 3sbc_A           23 AQVQKQAPTFKKTAVVDGVFDEVSLD-KY---------KGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFA   92 (216)
T ss_dssp             CCTTSBCCCCCEEEEETTEEEEECGG-GG---------TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred             hhcCCcCCCCCCcceECCCCcEEehH-Hh---------CCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEe
Confidence            578899999998743  234566544 34         5899999999 99999999999999999999864 6999999


Q ss_pred             ECCC
Q 031608          136 DVNK  139 (156)
Q Consensus       136 d~d~  139 (156)
                      ++|.
T Consensus        93 S~Ds   96 (216)
T 3sbc_A           93 STDS   96 (216)
T ss_dssp             ESSC
T ss_pred             ecCc
Confidence            9986

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=98.21  E-value=2.3e-06  Score=55.84  Aligned_cols=49  Identities=16%  Similarity=0.211  Sum_probs=38.6

Q ss_pred             EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHhCCcccee
Q 031608          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD----LVKRGNISVSI  154 (156)
Q Consensus       100 vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~~~i~sv~~  154 (156)
                      .++.|+++||++|++..+.+++.      ++.+..+|++++++.    .+.+++.++|+
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~   59 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK------GAEFNEIDASATPELRAEMQERSGRNTFPQ   59 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT------TCCCEEEESTTSHHHHHHHHHHHTSSCCCE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCE
Confidence            36779999999999999988864      367888899876544    44788888885

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=98.20  E-value=2e-06  Score=58.61  Aligned_cols=60  Identities=13%  Similarity=0.361  Sum_probs=40.5

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC----HH----HHHHhCCcccee
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV----SK----DLVKRGNISVSI  154 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~----~~----l~~~~~i~sv~~  154 (156)
                      .+.+++++.    .++  ++.|+++|||+|++..+.|+++.      +.+..+|++..    ++    +.+..|+.++|+
T Consensus         9 ~~~~~~~i~----~~~--v~vy~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~   76 (113)
T 3rhb_A            9 EESIRKTVT----ENT--VVIYSKTWCSYCTEVKTLFKRLG------VQPLVVELDQLGPQGPQLQKVLERLTGQHTVPN   76 (113)
T ss_dssp             HHHHHHHHH----HSS--EEEEECTTCHHHHHHHHHHHHTT------CCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCE
T ss_pred             HHHHHHHHh----cCC--EEEEECCCChhHHHHHHHHHHcC------CCCeEEEeecCCCChHHHHHHHHHHhCCCCcCE
Confidence            345555553    344  56699999999999999998752      44556677642    33    344468888875

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.19  E-value=2.2e-06  Score=66.27  Aligned_cols=40  Identities=13%  Similarity=0.191  Sum_probs=33.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      +++.+|+.|+.+|||+|+++.|.++++.+.  ++|.+..+++
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~  135 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLV  135 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEEC
Confidence            467799999999999999999999998765  3577776655

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.18  E-value=3e-06  Score=53.85  Aligned_cols=48  Identities=15%  Similarity=0.217  Sum_probs=37.6

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----DLVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~----l~~~~~i~sv~~  154 (156)
                      ++.|+++||++|++..+.+++.      ++.+..+|++++++    +.+.+++.++|+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~   54 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQ   54 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCE
T ss_pred             EEEEECCCChhHHHHHHHHHHC------CCCcEEEECCCCHHHHHHHHHHhCCCCcCE
Confidence            5679999999999999999874      26677788876543    456788888886

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=98.08  E-value=2.5e-06  Score=63.36  Aligned_cols=40  Identities=13%  Similarity=0.177  Sum_probs=36.4

Q ss_pred             CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      ++++||.|+..|||+|+++.|.++++.+++  ++.|..+.+.
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~--~v~~~~~p~~   61 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA--GTDIGKMHIT   61 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH--TSCCEEEECC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh--CCeEEEEecc
Confidence            689999999999999999999999999998  4788888875

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=98.06  E-value=3e-06  Score=58.19  Aligned_cols=60  Identities=13%  Similarity=0.187  Sum_probs=41.5

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC--C-----HHHHHHhCCcccee
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--V-----SKDLVKRGNISVSI  154 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~--~-----~~l~~~~~i~sv~~  154 (156)
                      .+.+++++.    .++ | +.|+++|||.|++.++.|+++      ++.+-.+|++.  +     ..+.+..|..++|+
T Consensus         7 ~~~~~~~i~----~~~-v-~vy~~~~Cp~C~~ak~~L~~~------~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~   73 (114)
T 3h8q_A            7 RRHLVGLIE----RSR-V-VIFSKSYCPHSTRVKELFSSL------GVECNVLELDQVDDGARVQEVLSEITNQKTVPN   73 (114)
T ss_dssp             HHHHHHHHH----HCS-E-EEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCE
T ss_pred             HHHHHHHhc----cCC-E-EEEEcCCCCcHHHHHHHHHHc------CCCcEEEEecCCCChHHHHHHHHHHhCCCccCE
Confidence            456777773    344 3 339999999999999999875      25566677764  3     23456678888875

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.05  E-value=4e-06  Score=61.89  Aligned_cols=43  Identities=16%  Similarity=0.318  Sum_probs=38.9

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      +++++|+.||..|||+|+.+.|.+.++.+++++++.|..+.+.
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~   63 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVV   63 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEeccc
Confidence            4788999999999999999999999999999877888888874

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=97.99  E-value=5.3e-05  Score=57.51  Aligned_cols=69  Identities=14%  Similarity=-0.007  Sum_probs=56.5

Q ss_pred             eEecCChhhHHHHHHHhhcCCCc-EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHhCCc
Q 031608           77 LEPINDSDHLDQILLRAQELSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNI  150 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~-vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~~~i~  150 (156)
                      +.++ +.+++.+++.    .+.+ +++.|..+||++|..+.+.|+++++++.+++.|+.+|.++  +..++..+|+.
T Consensus       115 v~e~-t~~n~~~~~~----~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~  186 (227)
T 4f9z_D          115 VTEY-NPVTVIGLFN----SVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLK  186 (227)
T ss_dssp             EEEC-CHHHHHHHHH----SSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCC
T ss_pred             eeec-CcccHHHHhc----cCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCC
Confidence            4455 4668888874    4544 4456778899999999999999999999889999999974  77889999997

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.99  E-value=4.7e-06  Score=54.36  Aligned_cols=48  Identities=19%  Similarity=0.252  Sum_probs=36.4

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC-----CC----HHHHHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-----KV----SKDLVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d-----~~----~~l~~~~~i~sv~~  154 (156)
                      ++.|+++||++|++..+.|+++.      +.+-.+|++     +.    +++.+.+++.++|+
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~g------i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~   70 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREG------VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPV   70 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCE
T ss_pred             EEEEECCCChHHHHHHHHHHHcC------CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCE
Confidence            56699999999999999998863      344456665     23    56677889998886

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=97.96  E-value=4e-05  Score=53.69  Aligned_cols=64  Identities=14%  Similarity=0.133  Sum_probs=54.6

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      ....|++.+++++++.    .+++++|-|+++||++|   .+.|.++|+.+ +.+.|+.++   +++++.++++.
T Consensus        22 ~~~~i~s~~e~e~fi~----~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d~~F~~t~---~~~v~~~~~v~   85 (124)
T 2l4c_A           22 EPTWLTDVPAAMEFIA----ATEVAVIGFFQDLEIPA---VPILHSMVQKF-PGVSFGIST---DSEVLTHYNIT   85 (124)
T ss_dssp             CCEECCSHHHHHHHHH----TSSEEEEEECSCTTSTH---HHHHHHHHHHC-TTSEEEEEC---CHHHHHHTTCC
T ss_pred             cceEcCCHHHHHHHHh----cCCCEEEEEECCCCChh---HHHHHHHHHhC-CCceEEEEC---hHHHHHHcCCC
Confidence            4566888899999994    68899999999999999   67899999999 568888774   37899999987

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=97.96  E-value=1.8e-05  Score=58.84  Aligned_cols=54  Identities=11%  Similarity=0.177  Sum_probs=41.7

Q ss_pred             CCCc-EEEEEeCCCChhHHh-hhHHHHHHHHHhcC-Ce-EEEEEECCC---CHHHHHHhCC
Q 031608           96 LSQP-ILIDWMASWCRKCIY-LKPKLEKLAAEFDT-KL-KFYYVDVNK---VSKDLVKRGN  149 (156)
Q Consensus        96 ~~k~-vlV~F~A~WC~~Ck~-~~p~l~~la~~~~~-~v-~~~~vd~d~---~~~l~~~~~i  149 (156)
                      .||+ ||+.|++.|||.|.. +.|.|.+.++++.. ++ .++.|..|.   ....++++++
T Consensus        46 ~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l  106 (176)
T 4f82_A           46 AGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHT  106 (176)
T ss_dssp             TTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTC
T ss_pred             CCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence            3664 566788999999999 99999999999864 58 899999986   2344455554

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=97.94  E-value=2.1e-06  Score=60.50  Aligned_cols=64  Identities=13%  Similarity=0.209  Sum_probs=43.6

Q ss_pred             ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhh-hHHHHHHHHHhcCCeEEEEEECCCC-------HHHHHHhCCccce
Q 031608           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYL-KPKLEKLAAEFDTKLKFYYVDVNKV-------SKDLVKRGNISVS  153 (156)
Q Consensus        82 ~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~-~p~l~~la~~~~~~v~~~~vd~d~~-------~~l~~~~~i~sv~  153 (156)
                      ..+.+++++.    .++  ++.|+++|||.|++. ++.|+++...   .+.+..+|++..       .++.+.+|..+||
T Consensus        26 ~~~~v~~~i~----~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~~---~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP   96 (129)
T 3ctg_A           26 TVAHVKDLIG----QKE--VFVAAKTYCPYCKATLSTLFQELNVP---KSKALVLELDEMSNGSEIQDALEEISGQKTVP   96 (129)
T ss_dssp             HHHHHHHHHH----HSS--EEEEECTTCHHHHHHHHHHHTTSCCC---GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHc----CCC--EEEEECCCCCchHHHHHHHHHhcCcc---CCCcEEEEccccCCHHHHHHHHHHHhCCCCCC
Confidence            3456666664    233  567999999999999 8888775421   144555565533       3577788998888


Q ss_pred             e
Q 031608          154 I  154 (156)
Q Consensus       154 ~  154 (156)
                      +
T Consensus        97 ~   97 (129)
T 3ctg_A           97 N   97 (129)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=97.93  E-value=1.1e-05  Score=61.97  Aligned_cols=70  Identities=9%  Similarity=0.180  Sum_probs=57.1

Q ss_pred             cchhccccCCCC----CCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEE
Q 031608           59 DVRVEALWPDLS----RPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKF  132 (156)
Q Consensus        59 ~~~~~~~~~~~~----~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~  132 (156)
                      .+.++..+|+|.    +|. .+..++... +|         .||++|+.|| ++||+.|..+...|.+.+.+|.. ++.+
T Consensus        25 ~~~vG~~APdF~~~a~l~d-~~g~~vsLs-d~---------~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~v   93 (219)
T 3tue_A           25 NAKINSPAPSFEEVALMPN-GSFKKISLS-SY---------KGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEV   93 (219)
T ss_dssp             CCCTTSBCCCCEEEEECTT-SCEEEEEGG-GG---------TTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEE
T ss_pred             ccccCCcCCCCcccccccC-CCCcEEehH-Hh---------CCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEE
Confidence            467899999997    443 245556533 34         5899999999 99999999999999999999975 6999


Q ss_pred             EEEECCC
Q 031608          133 YYVDVNK  139 (156)
Q Consensus       133 ~~vd~d~  139 (156)
                      ++|++|.
T Consensus        94 igiS~Ds  100 (219)
T 3tue_A           94 LACSIDS  100 (219)
T ss_dssp             EEEESSC
T ss_pred             EEeeCCc
Confidence            9999986

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.93  E-value=1.6e-05  Score=53.25  Aligned_cols=51  Identities=24%  Similarity=0.279  Sum_probs=35.1

Q ss_pred             CcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC--C---HHHH----HHhCCcccee
Q 031608           98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--V---SKDL----VKRGNISVSI  154 (156)
Q Consensus        98 k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~--~---~~l~----~~~~i~sv~~  154 (156)
                      +..++.|+++|||+|++.++.|+++.      +.+-.+|++.  .   +++.    +..|+.+||+
T Consensus        21 ~~~v~ly~~~~Cp~C~~ak~~L~~~~------i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~   80 (103)
T 3nzn_A           21 RGKVIMYGLSTCVWCKKTKKLLTDLG------VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPT   80 (103)
T ss_dssp             CSCEEEEECSSCHHHHHHHHHHHHHT------BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCE
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcC------CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCE
Confidence            34466699999999999999998863      3455566653  1   2332    2358888886

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.93  E-value=1.8e-05  Score=58.08  Aligned_cols=43  Identities=16%  Similarity=0.308  Sum_probs=38.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      +++++|+.|+..|||+|+.+.|.+.++.++++++|.+..+.+.
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~   66 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAV   66 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEECC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCcc
Confidence            4677999999999999999999999999998877888888774

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.92  E-value=2.4e-05  Score=56.72  Aligned_cols=43  Identities=16%  Similarity=0.183  Sum_probs=37.7

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHh--cCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~--~~~v~~~~vd~d  138 (156)
                      +++++|+.|+..|||+|+.+.|.+.++.++|  ++++.++..++.
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~   70 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   70 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCC
Confidence            4788999999999999999999999998888  667888887764

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.89  E-value=3.1e-05  Score=52.51  Aligned_cols=59  Identities=8%  Similarity=0.085  Sum_probs=42.5

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEeC-----CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHhCCcccee
Q 031608           84 DHLDQILLRAQELSQPILIDWMA-----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD----LVKRGNISVSI  154 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~A-----~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~~~i~sv~~  154 (156)
                      +.+++++    ..+ .|+| |+.     +||++|++.++.|+++      ++.+..+|+++++++    ....|..++|+
T Consensus         6 ~~~~~~i----~~~-~vvv-y~~g~~~~~~Cp~C~~ak~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~   73 (109)
T 1wik_A            6 SGLKVLT----NKA-SVML-FMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKTFSNWPTYPQ   73 (109)
T ss_dssp             CCHHHHH----TTS-SEEE-EESSTTTCCCSSTHHHHHHHHHHT------CSCEEEEESSSCHHHHHHHHHHHSCCSSCE
T ss_pred             HHHHHHh----ccC-CEEE-EEecCCCCCCCchHHHHHHHHHHc------CCCeEEEECCCCHHHHHHHHHHhCCCCCCE
Confidence            4577777    234 3444 666     9999999999999774      377889999887654    34467777764

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.87  E-value=1.8e-05  Score=52.78  Aligned_cols=48  Identities=27%  Similarity=0.466  Sum_probs=38.0

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHh-----CCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR-----GNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~-----~i~sv~~  154 (156)
                      |+.|+.+|||.|++.+..|++.      ++.+-.+|++++++..+.+     |..+||+
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~~------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~   58 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTAN------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPT   58 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCE
T ss_pred             EEEEcCCCCHhHHHHHHHHHhc------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCE
Confidence            5669999999999999888762      4788899999887665433     7778874

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=97.87  E-value=5.1e-06  Score=53.46  Aligned_cols=52  Identities=13%  Similarity=0.188  Sum_probs=37.1

Q ss_pred             cEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC----HHHHHHhCC-----cccee
Q 031608           99 PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV----SKDLVKRGN-----ISVSI  154 (156)
Q Consensus        99 ~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~----~~l~~~~~i-----~sv~~  154 (156)
                      ..++.|+++||++|++..+.|+++.    -.+.++.+|.++.    .++.+.+|.     .++|+
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~----i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~   64 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENN----IAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQ   64 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTT----CCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCE
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcC----CCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCE
Confidence            4577899999999999999887653    1255566666544    456677777     77775

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.81  E-value=1.8e-05  Score=59.00  Aligned_cols=43  Identities=14%  Similarity=0.433  Sum_probs=37.4

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d  138 (156)
                      .++++||.|+..|||+|+++.|.+   .++.+.+++++.|+.++..
T Consensus        20 ~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~   65 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVE   65 (191)
T ss_dssp             CSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECS
T ss_pred             CCCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEecc
Confidence            468899999999999999999987   6999999877888877764

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=97.79  E-value=9.2e-05  Score=60.25  Aligned_cols=109  Identities=13%  Similarity=0.007  Sum_probs=76.1

Q ss_pred             ccCCccCCCCCccccccCCceEEEeCCCccccccccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEE
Q 031608           24 FQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILID  103 (156)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~  103 (156)
                      ..+.|.+.|+|++++-+.+...-|.|..........+....      .   ..+..+++.+++++++.   ...++++|-
T Consensus        83 l~~~~~V~~~PTl~~f~~G~~~~y~G~~~~~~i~~~i~~~~------~---~~v~~i~~~~~~~~~~~---~~~~~~vv~  150 (367)
T 3us3_A           83 VAKKLGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDVL------E---DPVELIEGERELQAFEN---IEDEIKLIG  150 (367)
T ss_dssp             HHHHHTCCSTTEEEEEETTEEEECCSCCSHHHHHHHHHHHH------S---CSEEECCSHHHHHHHHH---CCSSCEEEE
T ss_pred             HHHHcCCCcCceEEEEECCcEEEeCCCCCHHHHHHHHHHhc------C---CCcEEcCCHHHHHHHhc---cCCCcEEEE
Confidence            34457899999999887655444554433333332222211      1   23567878889999984   256889999


Q ss_pred             EeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031608          104 WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus       104 F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      |+++||.   ...+.|.++|..+.+.+.|+.++   +.+++.+|++.
T Consensus       151 ff~~~~~---~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~v~  191 (367)
T 3us3_A          151 YFKNKDS---EHYKAFKEAAEEFHPYIPFFATF---DSKVAKKLTLK  191 (367)
T ss_dssp             ECSCTTC---HHHHHHHHHHHHHTTTSCEEEEC---CHHHHHHHTCC
T ss_pred             EECCCCc---hHHHHHHHHHHhhcCCcEEEEEC---CHHHHHHcCCC
Confidence            9999876   56788999999997778888764   56889999986

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=97.79  E-value=0.00013  Score=58.66  Aligned_cols=107  Identities=15%  Similarity=0.003  Sum_probs=73.2

Q ss_pred             CCccCCCCCccccccCCceEEEeCCCccccccccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe
Q 031608           26 QPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM  105 (156)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~  105 (156)
                      ..|.+.|+|++.+-+.+...-+.|..........+.       ...+  ..+..+++.+++++++.   ..++.++|.|+
T Consensus        83 ~~~~v~~~Pt~~~~~~g~~~~~~G~~~~~~l~~~i~-------~~~~--~~~~~l~~~~~~~~~~~---~~~~~~vv~ff  150 (350)
T 1sji_A           83 KKLGFDEEGSLYVLKGDRTIEFDGEFAADVLVEFLL-------DLIE--DPVEIINSKLEVQAFER---IEDQIKLIGFF  150 (350)
T ss_dssp             HHHTCCSTTEEEEEETTEEEEECSCCCHHHHHHHHH-------TTSS--CSEEECCSHHHHHHHHH---CCSSCEEEEEC
T ss_pred             HhcCCCccceEEEEECCcEEEecCCCCHHHHHHHHH-------HhcC--CcceeccchHHHHHHhc---cCCCcEEEEEE
Confidence            447889999998777665444544322222222211       1112  23567777889999883   14678899999


Q ss_pred             CCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031608          106 ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus       106 A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      ++||.+   ..+.|.++++.+.+.+.|+.+   .+++++.++++.
T Consensus       151 ~~~~~~---~~~~~~~~A~~~~~~~~f~~~---~~~~~~~~~~v~  189 (350)
T 1sji_A          151 KSEESE---YYKAFEEAAEHFQPYIKFFAT---FDKGVAKKLSLK  189 (350)
T ss_dssp             SCTTSH---HHHHHHHHHHHTTTTSEEEEE---CCHHHHHHHTCC
T ss_pred             CCCCcH---HHHHHHHHHHhhccCcEEEEE---CCHHHHHHcCCC
Confidence            999755   568999999999777888877   367899999987

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.58  E-value=0.00016  Score=53.67  Aligned_cols=71  Identities=10%  Similarity=0.018  Sum_probs=54.5

Q ss_pred             hhHHHHHHHh----hcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCCCH---------------
Q 031608           84 DHLDQILLRA----QELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS---------------  141 (156)
Q Consensus        84 ~~~~~~l~~a----~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~~~---------------  141 (156)
                      ..|++.+..|    +..+|+++|+++++||..|..+....   +++.+-+..++.+.+.|+++..               
T Consensus        38 gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~  117 (178)
T 2ec4_A           38 GSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGS  117 (178)
T ss_dssp             SCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCH
T ss_pred             CCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHH
Confidence            3688888888    78899999999999999999997443   4444444447999999998754               


Q ss_pred             HHH---HHhCCcccee
Q 031608          142 KDL---VKRGNISVSI  154 (156)
Q Consensus       142 ~l~---~~~~i~sv~~  154 (156)
                      .++   +.+++.++|+
T Consensus       118 ~~a~~~~~~~~~~~P~  133 (178)
T 2ec4_A          118 VVAQTIRTQKTDQFPL  133 (178)
T ss_dssp             HHHHHHHHSCSTTCSE
T ss_pred             HHHHHHhhcCCCCCCe
Confidence            333   3378888876

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=97.47  E-value=0.00016  Score=58.32  Aligned_cols=71  Identities=8%  Similarity=-0.041  Sum_probs=48.8

Q ss_pred             ccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC---
Q 031608           65 LWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---  140 (156)
Q Consensus        65 ~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~---  140 (156)
                      ..|+|++++.. ...+... +|         .||++|++|| +.||+.|..+.+.|.+   ....++.+++|+.|..   
T Consensus         3 k~p~F~l~~~~-G~~~~Ls-d~---------~Gk~vvl~F~p~~~tp~C~~e~~~~~~---~~~~~~~v~gis~D~~~~~   68 (322)
T 4eo3_A            3 RVKHFELLTDE-GKTFTHV-DL---------YGKYTILFFFPKAGTSGSTREAVEFSR---ENFEKAQVVGISRDSVEAL   68 (322)
T ss_dssp             BCCCCEEEETT-SCEEEGG-GT---------TTSEEEEEECSSTTSHHHHHHHHHHHH---SCCTTEEEEEEESCCHHHH
T ss_pred             CCCCcEEECCC-cCEEeHH-Hh---------CCCeEEEEEECCCCCCCCHHHHHHHHH---HhhCCCEEEEEeCCCHHHH
Confidence            45788887753 3444433 33         5999999999 7899999999888764   2223689999998752   


Q ss_pred             HHHHHHhCC
Q 031608          141 SKDLVKRGN  149 (156)
Q Consensus       141 ~~l~~~~~i  149 (156)
                      ...++++++
T Consensus        69 ~~f~~~~~l   77 (322)
T 4eo3_A           69 KRFKEKNDL   77 (322)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHhhCC
Confidence            234455554

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=97.36  E-value=0.00038  Score=50.78  Aligned_cols=43  Identities=12%  Similarity=0.203  Sum_probs=37.4

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHH-HHHHHHhcCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKL-EKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l-~~la~~~~~~v~~~~vd~d  138 (156)
                      ++++++|+||..+||+|..+.+.+ .++.+++++++.+..+.+.
T Consensus        16 ~~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~v~~~~~~l~   59 (195)
T 3c7m_A           16 NADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLE   59 (195)
T ss_dssp             SCTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTCEEEEEECT
T ss_pred             CCCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCCceEEEEEecC
Confidence            367789999999999999999999 9999988877888877765

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=97.35  E-value=0.00028  Score=52.46  Aligned_cols=55  Identities=15%  Similarity=0.226  Sum_probs=42.7

Q ss_pred             CCCcEEEEEe-CCCChhHH-hhhHHHHHHHHHh-cC-CeE-EEEEECCCC---HHHHHHhCCc
Q 031608           96 LSQPILIDWM-ASWCRKCI-YLKPKLEKLAAEF-DT-KLK-FYYVDVNKV---SKDLVKRGNI  150 (156)
Q Consensus        96 ~~k~vlV~F~-A~WC~~Ck-~~~p~l~~la~~~-~~-~v~-~~~vd~d~~---~~l~~~~~i~  150 (156)
                      .|+++|+.|| +.|||.|- .+.+.|.+.+.++ .. ++. ++.|..|..   ...++++++.
T Consensus        42 ~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~V~gvS~D~~~~~~~~~~~~~~~  104 (182)
T 1xiy_A           42 NNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIK  104 (182)
T ss_dssp             TTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSCHHHHHHHHHHTTCC
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC
Confidence            4778777776 89999999 8999999998888 53 574 899999873   4556666653

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.33  E-value=0.00047  Score=49.66  Aligned_cols=42  Identities=21%  Similarity=0.511  Sum_probs=37.0

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      .++++||.|+.-.||+|+.+.|.+.++.+++++++.+..+..
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~   61 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHV   61 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEEC
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEec
Confidence            478999999999999999999999999999987677766655

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=97.31  E-value=0.00042  Score=52.49  Aligned_cols=66  Identities=15%  Similarity=0.131  Sum_probs=55.4

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcc
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS  151 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~s  151 (156)
                      .+.+.+++.+++++++.    .++++||-|+++|   |..+.|.|.++|+.+. .+.|+..   .+++++.++++..
T Consensus         9 ~~~~~l~s~~~~~~~l~----~~~v~vVgff~~~---~~~~~~~f~~~A~~l~-~~~F~~t---~~~~v~~~~~v~~   74 (227)
T 4f9z_D            9 QEPTWLTDVPAAMEFIA----ATEVAVIGFFQDL---EIPAVPILHSMVQKFP-GVSFGIS---TDSEVLTHYNITG   74 (227)
T ss_dssp             CCCEECCSHHHHHHHHH----TSSEEEEEECSCS---CSTHHHHHHHHTTTCT-TSEEEEE---CCHHHHHHTTCCS
T ss_pred             CCCeeeCCHHHHHHHHh----cCCeEEEEEecCC---CchhHHHHHHHHHhCC-CceEEEE---CCHHHHHHcCCCC
Confidence            45688999999999984    6899999999999   5689999999999995 6888764   4788999999864

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=97.28  E-value=0.00023  Score=52.46  Aligned_cols=82  Identities=12%  Similarity=0.073  Sum_probs=57.5

Q ss_pred             cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeE-EEEE
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLK-FYYV  135 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~-~~~v  135 (156)
                      -..++..+|+|.++.......+...+.+         .|+++|+.|| +.|||.|-.+.+.|.+.+.++.. ++. ++.|
T Consensus        13 ~~~vGd~aPdf~l~~~g~~~~v~L~d~~---------~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigI   83 (171)
T 2xhf_A           13 PIKVGDIIPDVLVYEDVPSKSFPIHDVF---------RGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACI   83 (171)
T ss_dssp             CCCTTCBCCCCEEECSSTTCEEETHHHH---------TTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEE
T ss_pred             cccCcCCCCCeEEecCCCCcEEEhHHHh---------CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence            4567778888887743211344333222         4788888887 78999999999999998888863 575 8899


Q ss_pred             ECCCC---HHHHHHhCC
Q 031608          136 DVNKV---SKDLVKRGN  149 (156)
Q Consensus       136 d~d~~---~~l~~~~~i  149 (156)
                      .+|..   .+.++++++
T Consensus        84 S~D~~~~~~~w~~~~~~  100 (171)
T 2xhf_A           84 AVNDPFVMAAWGKTVDP  100 (171)
T ss_dssp             ESSCHHHHHHHHHHHCT
T ss_pred             eCCCHHHHHHHHHhcCC
Confidence            99863   355666665

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=97.19  E-value=0.00046  Score=48.95  Aligned_cols=60  Identities=15%  Similarity=0.146  Sum_probs=40.4

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEeC----CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHH----HhCCcccee
Q 031608           84 DHLDQILLRAQELSQPILIDWMA----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV----KRGNISVSI  154 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~A----~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~----~~~i~sv~~  154 (156)
                      +.+++++.    .+ .|+|+.++    +||+.|++.+..|.++      ++.+..+|+++++++..    ..|..++|+
T Consensus        26 ~~v~~~i~----~~-~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~------gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~   93 (135)
T 2wci_A           26 EKIQRQIA----EN-PILLYMKGSPKLPSCGFSAQAVQALAAC------GERFAYVDILQNPDIRAELPKYANWPTFPQ   93 (135)
T ss_dssp             HHHHHHHH----HC-SEEEEESBCSSSBSSHHHHHHHHHHHTT------CSCCEEEEGGGCHHHHHHHHHHHTCCSSCE
T ss_pred             HHHHHHhc----cC-CEEEEEEecCCCCCCccHHHHHHHHHHc------CCceEEEECCCCHHHHHHHHHHHCCCCcCE
Confidence            45555653    23 45554444    8999999999988764      36788889987665543    347777764

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.00071  Score=47.43  Aligned_cols=65  Identities=22%  Similarity=0.147  Sum_probs=39.3

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH----H-HHHHhCCcccee
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----K-DLVKRGNISVSI  154 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~----~-l~~~~~i~sv~~  154 (156)
                      .++|++++.    .++  ++.|+.+|||.|++.+..|.+.. .+...+..+.||.+.+.    + +.+..|..+||+
T Consensus         4 ~~~~~~ii~----~~~--Vvvysk~~Cp~C~~ak~lL~~~~-~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~   73 (127)
T 3l4n_A            4 QKEYSLILD----LSP--IIIFSKSTCSYSKGMKELLENEY-QFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPN   73 (127)
T ss_dssp             HHHHHHHHT----SCS--EEEEECTTCHHHHHHHHHHHHHE-EEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCE
T ss_pred             HHHHHHHHc----cCC--EEEEEcCCCccHHHHHHHHHHhc-ccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcce
Confidence            346778772    333  66699999999999999998741 11212344444444332    2 223347777774

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=96.79  E-value=0.0027  Score=48.19  Aligned_cols=51  Identities=18%  Similarity=0.137  Sum_probs=38.2

Q ss_pred             CcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC---HHHHHHhCCcccee
Q 031608           98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISVSI  154 (156)
Q Consensus        98 k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~---~~l~~~~~i~sv~~  154 (156)
                      ...++.|+.+||+.|++.+..|++.      ++.+-.+|++.+   .++.+.+|..++|+
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~~i~~~~~~~~l~~~~g~~~vP~  222 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQ  222 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCE
T ss_pred             cceEEEEECCCChHHHHHHHHHHHc------CCceEEEECCCchHHHHHHHHhCCCCcCE
Confidence            4457778999999999999988864      255666777653   34677788888875

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=96.78  E-value=0.0035  Score=42.32  Aligned_cols=42  Identities=12%  Similarity=0.011  Sum_probs=30.4

Q ss_pred             CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHH----HhCCcccee
Q 031608          107 SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV----KRGNISVSI  154 (156)
Q Consensus       107 ~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~----~~~i~sv~~  154 (156)
                      ||||.|++.+..|.+.      ++.+-.+|+++++++..    ..|..++|.
T Consensus        31 p~Cp~C~~ak~~L~~~------gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~   76 (109)
T 3ipz_A           31 PMCGFSNTVVQILKNL------NVPFEDVNILENEMLRQGLKEYSNWPTFPQ   76 (109)
T ss_dssp             BSSHHHHHHHHHHHHT------TCCCEEEEGGGCHHHHHHHHHHHTCSSSCE
T ss_pred             CCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHHCCCCCCe
Confidence            4999999999988874      36677788877665433    336677763

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=96.77  E-value=0.0029  Score=43.00  Aligned_cols=47  Identities=13%  Similarity=0.069  Sum_probs=33.8

Q ss_pred             EEEeC-----CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHH----hCCcccee
Q 031608          102 IDWMA-----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK----RGNISVSI  154 (156)
Q Consensus       102 V~F~A-----~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~----~~i~sv~~  154 (156)
                      |.|..     +|||.|++.+..|.+.      ++.+..+|++.++++...    .|..++|.
T Consensus        19 vlf~kg~~~~~~Cp~C~~ak~~L~~~------gi~y~~~di~~d~~~~~~l~~~~g~~tvP~   74 (111)
T 3zyw_A           19 MLFMKGTPQEPRCGFSKQMVEILHKH------NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQ   74 (111)
T ss_dssp             EEEESBCSSSBSSHHHHHHHHHHHHT------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCE
T ss_pred             EEEEecCCCCCcchhHHHHHHHHHHc------CCCeEEEECcCCHHHHHHHHHHHCCCCCCE
Confidence            44777     9999999999888763      366777898876655332    36666664

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=96.66  E-value=0.0053  Score=39.32  Aligned_cols=48  Identities=19%  Similarity=0.179  Sum_probs=34.9

Q ss_pred             EEEEeCC----CChhHHhhhHHHHHHHHHhcCCeEEEEEECC-----CCHH----HHHHhCCc-----ccee
Q 031608          101 LIDWMAS----WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-----KVSK----DLVKRGNI-----SVSI  154 (156)
Q Consensus       101 lV~F~A~----WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d-----~~~~----l~~~~~i~-----sv~~  154 (156)
                      ++.|+.+    ||+.|++.+..|++.      ++.+-.+|++     .+++    +.+..|..     ++|+
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~------gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~   67 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQ   67 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCE
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc------CCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCE
Confidence            4568899    999999999888773      3667778887     5543    45566776     6764

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=96.62  E-value=0.0021  Score=46.03  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=30.5

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      +++.+|+.|+.++||.|+++.+.++++    + ++.++..+.
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~-~v~v~~~~~   49 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM----T-DVTVYSFMM   49 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC----C-SEEEEEEEC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc----C-ceEEEEEEc
Confidence            578999999999999999999998764    3 477766654

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.011  Score=40.79  Aligned_cols=42  Identities=10%  Similarity=-0.107  Sum_probs=30.3

Q ss_pred             CCChhHHhhhHHHHHHHHHhcCCeE---EEEEECCCCHHHHH----HhCCcccee
Q 031608          107 SWCRKCIYLKPKLEKLAAEFDTKLK---FYYVDVNKVSKDLV----KRGNISVSI  154 (156)
Q Consensus       107 ~WC~~Ck~~~p~l~~la~~~~~~v~---~~~vd~d~~~~l~~----~~~i~sv~~  154 (156)
                      ||||.|++.+..|.+..      +.   +..+|+++++++..    ..|..++|+
T Consensus        29 p~Cp~C~~ak~lL~~~g------v~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~   77 (121)
T 3gx8_A           29 PKCGFSRATIGLLGNQG------VDPAKFAAYNVLEDPELREGIKEFSEWPTIPQ   77 (121)
T ss_dssp             BCTTHHHHHHHHHHHHT------BCGGGEEEEECTTCHHHHHHHHHHHTCCSSCE
T ss_pred             CCCccHHHHHHHHHHcC------CCcceEEEEEecCCHHHHHHHHHHhCCCCCCe
Confidence            49999999999998852      44   77888887765533    346666664

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=96.47  E-value=0.014  Score=44.58  Aligned_cols=65  Identities=8%  Similarity=0.161  Sum_probs=53.4

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      .+..|++.+++++++    ..++.++|-|+++|   |..+.+.|.++|..+.+.+.|+.+.   +++++.++++.
T Consensus         7 ~v~~l~s~~~~~~~l----~~~~v~vvgff~~~---~~~~~~~f~~~A~~lr~~~~F~~~~---~~~v~~~~~~~   71 (252)
T 2h8l_A            7 ASVPLRTEEEFKKFI----SDKDASIVGFFDDS---FSEAHSEFLKAASNLRDNYRFAHTN---VESLVNEYDDN   71 (252)
T ss_dssp             CEEECCSHHHHHHHH----TSSSCEEEEEESCT---TSHHHHHHHHHHHHTTTTSCEEEEC---CHHHHHHHCSS
T ss_pred             CceeecCHHHHHHHh----hcCCeEEEEEECCC---CChHHHHHHHHHHhcccCcEEEEEC---hHHHHHHhCCC
Confidence            367788888999998    46788899999998   5567889999999997778888773   57788999887

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=96.29  E-value=0.0064  Score=39.53  Aligned_cols=48  Identities=13%  Similarity=0.087  Sum_probs=33.7

Q ss_pred             EEEEeCCCChhH------HhhhHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHhC--Ccccee
Q 031608          101 LIDWMASWCRKC------IYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD----LVKRG--NISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~C------k~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~~~--i~sv~~  154 (156)
                      ++.|+.+||+.|      ++....|++    .  ++.+..+|++.+++.    .+..|  ..++|+
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~----~--~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~   63 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDG----K--RIQYQLVDISQDNALRDEMRTLAGNPKATPPQ   63 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHH----T--TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHH----C--CCceEEEECCCCHHHHHHHHHHhCCCCCCCCE
Confidence            556899999999      677666654    2  377888999876543    33567  567764

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=96.27  E-value=0.0091  Score=44.51  Aligned_cols=44  Identities=18%  Similarity=0.387  Sum_probs=36.4

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHH-HHHHHHhc--CCeEEEEEECCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKL-EKLAAEFD--TKLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l-~~la~~~~--~~v~~~~vd~d~  139 (156)
                      +++++||.|+...||+|+++.+.+ ..+.+.|.  ++|.|+..++.-
T Consensus        28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~   74 (202)
T 3gha_A           28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMF   74 (202)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCc
Confidence            478899999999999999999987 66777774  469999888753

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=96.09  E-value=0.028  Score=45.56  Aligned_cols=68  Identities=13%  Similarity=0.152  Sum_probs=54.0

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCCh-hHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCR-KCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~-~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      .+++ .+++.+++    ..+.+++|.|+.++|. .|..+...+.+++.++.+++.|+.+|.++.++.+..+|+.
T Consensus       222 ~elt-~~~~~~~~----~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~id~~~~~~~~~~~gl~  290 (382)
T 2r2j_A          222 REIT-FENGEELT----EEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKT  290 (382)
T ss_dssp             EECC-HHHHHHHH----TTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEEEETTTTHHHHHHTTCC
T ss_pred             EecC-hhhHHHHh----cCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCCeeEEEEEchHHhHHHHHHcCCC
Confidence            3444 56777776    4689999999999984 4566667777777677778999999999999999999986

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=95.96  E-value=0.02  Score=45.09  Aligned_cols=54  Identities=15%  Similarity=0.097  Sum_probs=39.6

Q ss_pred             cEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC------------------CHHHHHHhCCccc--ee
Q 031608           99 PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK------------------VSKDLVKRGNISV--SI  154 (156)
Q Consensus        99 ~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~------------------~~~l~~~~~i~sv--~~  154 (156)
                      ..|..|+.++|+.|...+..|++++.+++  +....+++++                  ..++++++|..+|  |+
T Consensus        44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~~~--vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPq  117 (270)
T 2axo_A           44 GVVELFTSQGCASCPPADEALRKMIQKGD--VVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQ  117 (270)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHHTS--SEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSE
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHhhccCC--eeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCE
Confidence            57778999999999999999999987754  4333344321                  2346778899888  64

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.96  E-value=0.011  Score=39.94  Aligned_cols=38  Identities=21%  Similarity=0.183  Sum_probs=28.8

Q ss_pred             EEEEEeCCCChhHH------hhhHHHHHHHHHhcCCeEEEEEECCCCHHH
Q 031608          100 ILIDWMASWCRKCI------YLKPKLEKLAAEFDTKLKFYYVDVNKVSKD  143 (156)
Q Consensus       100 vlV~F~A~WC~~Ck------~~~p~l~~la~~~~~~v~~~~vd~d~~~~l  143 (156)
                      -|+.|+.+||+.|+      +.+..|++    +  ++.+..+|++.+++.
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~----~--gi~y~~vdI~~~~~~   52 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFLEA----N--KIEFEEVDITMSEEQ   52 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHH----T--TCCEEEEETTTCHHH
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHHHH----c--CCCEEEEECCCCHHH
Confidence            46678999999999      66666654    2  378889999887654

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=95.95  E-value=0.025  Score=43.27  Aligned_cols=66  Identities=8%  Similarity=-0.095  Sum_probs=53.7

Q ss_pred             ceEecCChhhHHHHHHHhhcC-CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcc
Q 031608           76 ELEPINDSDHLDQILLRAQEL-SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS  151 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~-~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~s  151 (156)
                      .+..|++.+++++++.    . ++.++|-|++++|   ..+.+.|.++|+.+.+.+.|+..   .+++++.++++..
T Consensus         7 ~v~~l~s~~~~~~~~~----~~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~~~~F~~t---~~~~v~~~~~v~~   73 (250)
T 3ec3_A            7 PSKEILTLKQVQEFLK----DGDDVVILGVFQGVG---DPGYLQYQDAANTLREDYKFHHT---FSTEIAKFLKVSL   73 (250)
T ss_dssp             SSEECCCHHHHHHHHH----HCSSCEEEEECSCTT---CHHHHHHHHHHHHHTTTCCEEEE---CCHHHHHHHTCCS
T ss_pred             CceecCCHHHHHHHHh----cCCCeEEEEEEcCCC---chHHHHHHHHHHhhhcCcEEEEE---CcHHHHHHcCCCC
Confidence            3577888889999884    4 7889999999985   57889999999999777888876   3678888888763

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=95.82  E-value=0.016  Score=42.60  Aligned_cols=42  Identities=12%  Similarity=0.086  Sum_probs=35.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHh-cCCeEEEEEEC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDV  137 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~-~~~v~~~~vd~  137 (156)
                      +.+.+|+.|.-.-||+|+++.+.+.++.+++ +++|.++.-+.
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~   55 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQ   55 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEc
Confidence            4678899999999999999999998877766 66788887775

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=95.80  E-value=0.019  Score=43.64  Aligned_cols=43  Identities=12%  Similarity=0.413  Sum_probs=35.4

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHH-HHHHHHHh--cCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPK-LEKLAAEF--DTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~-l~~la~~~--~~~v~~~~vd~d  138 (156)
                      +++.+|+.|+...||+|+++.|. +.++.++|  .++|.|+..+..
T Consensus        38 ~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p   83 (226)
T 3f4s_A           38 KAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFP   83 (226)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCC
Confidence            46788999999999999999996 47888888  346888877764

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=95.25  E-value=0.049  Score=39.33  Aligned_cols=43  Identities=21%  Similarity=0.464  Sum_probs=34.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHH-HHHHHHhc--CCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKL-EKLAAEFD--TKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l-~~la~~~~--~~v~~~~vd~d  138 (156)
                      ++++.|+.|+..-||+|+.+.+.+ ..+.++|.  +++.++..+..
T Consensus        10 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p   55 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLA   55 (186)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEecC
Confidence            468889999999999999999998 57777785  35777776653

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=94.73  E-value=0.086  Score=39.37  Aligned_cols=43  Identities=12%  Similarity=0.140  Sum_probs=34.5

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHH-Hh--cCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAA-EF--DTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~-~~--~~~v~~~~vd~d  138 (156)
                      +.+.+||.|.-.-||.|+++.+.+....+ +|  .++|.++..+.-
T Consensus        14 ~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~p   59 (205)
T 3gmf_A           14 AAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFV   59 (205)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEECC
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeCC
Confidence            47888999999999999999998865544 77  456888877763

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=94.49  E-value=0.089  Score=41.37  Aligned_cols=98  Identities=12%  Similarity=0.121  Sum_probs=61.7

Q ss_pred             cCCccCCCCCccccccCCce------------------EEEeCCCccccccccchhccccCCCCCCCccceEecCChhhH
Q 031608           25 QQPWSSGSSSCLLLQKNSAF------------------FWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHL   86 (156)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~~~~~i~~~~~~   86 (156)
                      ...|.+.|+|++++-+.+..                  ..|.|.       +.......|.....++  .+..+.+.+++
T Consensus        84 ~~~~~I~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~-------r~~~~i~~fl~~~~~~--~v~~i~~~~~l  154 (298)
T 3ed3_A           84 CAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGA-------RTLAPIVDFSLSRIRS--YVKKFVRIDTL  154 (298)
T ss_dssp             HHHTTCCBSSEEEEEECCCC-------------CCCEEEECCSC-------CSHHHHHHHHHTTCCC--CEEECSCGGGH
T ss_pred             HHhCCCCccceEEEEECCceeecccccccccccccccceeecCC-------cCHHHHHHHHHHhccc--ccEEcCCHHHH
Confidence            34577888898887666541                  222222       2222222332222332  35678888889


Q ss_pred             HHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608           87 DQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus        87 ~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      ++++.   ..++++++.|..     .....+.|.+++..+.+.+.|+.++-.+
T Consensus       155 ~~~l~---~~~~~~vi~fs~-----~~~~~~~f~~~A~~~~~~~~F~~v~~~~  199 (298)
T 3ed3_A          155 GSLLR---KSPKLSVVLFSK-----QDKISPVYKSIALDWLGKFDFYSISNKK  199 (298)
T ss_dssp             HHHHT---SCSSEEEEEEES-----SSSCCHHHHHHHHHTBTTEEEEEEEGGG
T ss_pred             HHHHh---cCCceEEEEEcC-----CCcchHHHHHHHHHhhcCcEEEEEcchH
Confidence            99885   235777777733     2346689999999998889999998654

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=94.44  E-value=0.21  Score=35.18  Aligned_cols=69  Identities=13%  Similarity=0.035  Sum_probs=49.8

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCC-CChhHHhhhHHHHHHHHHhcCCeEEEEEEC--CCCHHHHHHhCCcc
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDTKLKFYYVDV--NKVSKDLVKRGNIS  151 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~-WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~--d~~~~l~~~~~i~s  151 (156)
                      .++ +.++..++.    ..+.++.+.++.. --..=..+.+.++++|+++.+++.|+.+|.  +++..++..+|+..
T Consensus        17 ~e~-t~en~~~~~----~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl~~   88 (147)
T 3bj5_A           17 IEF-TEQTAPKIF----GGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKK   88 (147)
T ss_dssp             EEC-CTTTHHHHH----SSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTCCG
T ss_pred             EEe-ccccHHHHh----cCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCCCc
Confidence            344 355677776    4566665554443 333455678999999999998899999999  66778889999985

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=94.29  E-value=0.055  Score=42.64  Aligned_cols=30  Identities=23%  Similarity=0.203  Sum_probs=26.7

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHH
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAE  125 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~  125 (156)
                      +++.+++.|+-+.||.|+++.+.+++..++
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~~~l~~~l~~  175 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKELTKLRDHLKE  175 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHHHTHHHHHHH
T ss_pred             CCCeEEEEEECcCChhHHHHHHHHHHHhhC
Confidence            478999999999999999999999976654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.34  E-value=0.076  Score=45.39  Aligned_cols=59  Identities=15%  Similarity=0.164  Sum_probs=38.2

Q ss_pred             hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC---HH----HHHHhCCcccee
Q 031608           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SK----DLVKRGNISVSI  154 (156)
Q Consensus        84 ~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~---~~----l~~~~~i~sv~~  154 (156)
                      +.+++++.    ..+  ++.|+.+|||.|++.+..|.+..      +.+-.+|++..   ++    +.+..|..++|.
T Consensus         9 ~~v~~~i~----~~~--v~vy~~~~Cp~C~~~k~~L~~~~------i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~   74 (598)
T 2x8g_A            9 QWLRKTVD----SAA--VILFSKTTCPYCKKVKDVLAEAK------IKHATIELDQLSNGSAIQKCLASFSKIETVPQ   74 (598)
T ss_dssp             HHHHHHHH----HCS--EEEEECTTCHHHHHHHHHHHHTT------CCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCE
T ss_pred             HHHHHHhc----cCC--EEEEECCCChhHHHHHHHHHHCC------CCcEEEEcccCcchHHHHHHHHHHhCCceeCE
Confidence            56777774    233  55699999999999999988642      44555666532   22    233456677764

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=93.13  E-value=0.085  Score=43.17  Aligned_cols=53  Identities=13%  Similarity=0.064  Sum_probs=31.8

Q ss_pred             EEEEeCCCChhHHhhhH-HHHHHHHHhcCCeEEEEEEC-CCCH----HHHHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKP-KLEKLAAEFDTKLKFYYVDV-NKVS----KDLVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p-~l~~la~~~~~~v~~~~vd~-d~~~----~l~~~~~i~sv~~  154 (156)
                      |+.|+.+|||.|++... .|+++.-.|. .+.++.+|- ++.+    ++.+..|..+||+
T Consensus       263 VvVYsk~~CPyC~~Ak~~LL~~~gV~y~-eidVlEld~~~~~~e~~~~L~~~tG~~TVPq  321 (362)
T 2jad_A          263 IFVASKTYCPYSHAALNTLFEKLKVPRS-KVLVLQLNDMKEGADIQAALYEINGQRTVPN  321 (362)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTTCCCTT-TEEEEEGGGSTTHHHHHHHHHHHHCCCSSCE
T ss_pred             EEEEEcCCCcchHHHHHHHHHHcCCCcc-eEEEEEeccccCCHHHHHHHHHHHCCCCcCE
Confidence            44589999999999876 5665433332 244444432 2232    3344568888874

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=92.77  E-value=0.09  Score=35.86  Aligned_cols=33  Identities=15%  Similarity=0.180  Sum_probs=25.5

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      +..|+.++|+.|++....|++.      ++.+-.+|+.+
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~~------gi~y~~~di~~   39 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLEDH------GIDYTFHDYKK   39 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCEEEEEHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHc------CCcEEEEeeeC
Confidence            5568899999999999888773      35666677753

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=92.75  E-value=0.12  Score=35.88  Aligned_cols=34  Identities=15%  Similarity=0.271  Sum_probs=26.6

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV  140 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~  140 (156)
                      ++.|+.++|+.|++....|++.      ++.+-.+|++++
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~~------gi~y~~~di~~~   36 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEEH------EIPFVERNIFSE   36 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCceEEEEccCC
Confidence            5568899999999999888763      366777888654

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=91.41  E-value=0.15  Score=34.40  Aligned_cols=33  Identities=12%  Similarity=0.201  Sum_probs=25.6

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      ++.|+.++|+.|++....|++.      ++.+-.+|+.+
T Consensus         2 i~iY~~~~C~~C~kak~~L~~~------gi~~~~~di~~   34 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDEH------KVAYDFHDYKA   34 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT------TCCEEEEEHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHC------CCceEEEeecC
Confidence            4568899999999998888762      36777788754

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=91.13  E-value=0.33  Score=33.53  Aligned_cols=38  Identities=18%  Similarity=0.141  Sum_probs=26.3

Q ss_pred             EEEEEeCCCChhHH------hhhHHHHHHHHHhcCCeEEEEEECCCCHHH
Q 031608          100 ILIDWMASWCRKCI------YLKPKLEKLAAEFDTKLKFYYVDVNKVSKD  143 (156)
Q Consensus       100 vlV~F~A~WC~~Ck------~~~p~l~~la~~~~~~v~~~~vd~d~~~~l  143 (156)
                      +|+.|+++.||.|+      +.+-.|+.    .  +|.|-.+|++.+++.
T Consensus         1 ~V~vYtt~~c~~c~~kk~c~~aK~lL~~----k--gV~feEidI~~d~~~   44 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKKQQDVLGFLEA----N--KIGFEEKDIAANEEN   44 (121)
T ss_dssp             CEEEEECTTCSCHHHHHHHHHHHHHHHH----T--TCCEEEEECTTCHHH
T ss_pred             CEEEEecCCCCCccchHHHHHHHHHHHH----C--CCceEEEECCCCHHH
Confidence            46778899999994      44443333    2  488999999876543

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=90.60  E-value=0.29  Score=33.39  Aligned_cols=34  Identities=12%  Similarity=0.272  Sum_probs=26.3

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV  140 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~  140 (156)
                      +..|+.++|+.|++....|++.      ++.+-.+|+.++
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~~di~~~   35 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNRH------DVVFQEHNIMTS   35 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT------TCCEEEEETTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence            4568899999999999888752      367777888653

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=90.57  E-value=0.64  Score=35.12  Aligned_cols=65  Identities=22%  Similarity=0.292  Sum_probs=45.6

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCC-h--hHH-hhhHHHHHHHHHhcCC---eEEEEEECCCCHHHHHHhCC
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWC-R--KCI-YLKPKLEKLAAEFDTK---LKFYYVDVNKVSKDLVKRGN  149 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC-~--~Ck-~~~p~l~~la~~~~~~---v~~~~vd~d~~~~l~~~~~i  149 (156)
                      .+++ .+++.++.      +.+++|.|+..-+ .  .+. .+...+.++|+++.++   +.|+.+|.++...++..||+
T Consensus       117 ~e~t-~~n~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl  188 (252)
T 2h8l_A          117 PHMT-EDNKDLIQ------GKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGL  188 (252)
T ss_dssp             CEEC-TTTHHHHS------SSSEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTC
T ss_pred             eecc-cccHhhhc------CCCeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCC
Confidence            4454 33555542      4566666664332 1  222 4778888899999765   99999999999999999999

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=90.55  E-value=0.76  Score=34.75  Aligned_cols=68  Identities=12%  Similarity=0.272  Sum_probs=50.3

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeC-CCC---hh-HHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcc
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMA-SWC---RK-CIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS  151 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A-~WC---~~-Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~s  151 (156)
                      +.+++ .+++.++.     .++++++.|+. ++.   .. ...+...+.++++++. ++.|+.+|.++..+.++.+|+..
T Consensus       118 v~e~t-~~n~~~~~-----~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k-ki~F~~~d~~~~~~~l~~fgl~~  190 (250)
T 3ec3_A          118 VGHRK-TSNDAKRY-----SKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP-EYTFAIADEEDYATEVKDLGLSE  190 (250)
T ss_dssp             EEEEC-TTTHHHHS-----CSSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT-TSEEEEEETTTTHHHHHHTTCSS
T ss_pred             eeecC-ccchhhhh-----ccCccEEEEEecccccccchhHHHHHHHHHHHHHhhc-ceeEEEEcHHHHHHHHHHcCCCc
Confidence            44555 33555554     37787777775 443   44 4557899999999999 89999999999998898888863

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=90.32  E-value=0.61  Score=31.96  Aligned_cols=60  Identities=8%  Similarity=0.115  Sum_probs=37.9

Q ss_pred             ChhhHHHHHHHhhcCCCcEEEEEeC-----CCChhHHhhhHHHHHHHHHhcCCe-EEEEEECCCCHHHHH----HhCCcc
Q 031608           82 DSDHLDQILLRAQELSQPILIDWMA-----SWCRKCIYLKPKLEKLAAEFDTKL-KFYYVDVNKVSKDLV----KRGNIS  151 (156)
Q Consensus        82 ~~~~~~~~l~~a~~~~k~vlV~F~A-----~WC~~Ck~~~p~l~~la~~~~~~v-~~~~vd~d~~~~l~~----~~~i~s  151 (156)
                      +.+.+++++.    +++ |+| |.-     |.||.|++....|.+.      ++ .+..+|+++++++-+    .-|-.+
T Consensus         9 ~~e~i~~~i~----~~~-Vvv-F~Kgt~~~P~C~fc~~ak~lL~~~------gv~~~~~~~v~~~~~~r~~l~~~sg~~T   76 (118)
T 2wul_A            9 SAEQLDALVK----KDK-VVV-FLKGTPEQPQCGFSNAVVQILRLH------GVRDYAAYNVLDDPELRQGIKDYSNWPT   76 (118)
T ss_dssp             CHHHHHHHHH----HSS-EEE-EESBCSSSBSSHHHHHHHHHHHHT------TCCSCEEEETTSCHHHHHHHHHHHTCCS
T ss_pred             hHHHHHHHHh----cCC-EEE-EEcCCCCCCCCHHHHHHHHHHHHh------CCcCeEeecccCCHHHHHHHHHhccCCC
Confidence            3567788884    344 443 543     5799999999887653      23 467788887765533    234445


Q ss_pred             ce
Q 031608          152 VS  153 (156)
Q Consensus       152 v~  153 (156)
                      ||
T Consensus        77 vP   78 (118)
T 2wul_A           77 IP   78 (118)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=89.93  E-value=0.73  Score=31.74  Aligned_cols=36  Identities=22%  Similarity=0.487  Sum_probs=29.7

Q ss_pred             CcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        98 k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      |.++|.|.-|.|+-|......+.++..    +..+..||+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~led----eY~ilrVNI   37 (124)
T 2g2q_A            2 KNVLIIFGKPYCSICENVSDAVEELKS----EYDILHVDI   37 (124)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHTTTT----TEEEEEEEC
T ss_pred             CceEEEeCCCccHHHHHHHHHHHHhhc----cccEEEEEe
Confidence            568999999999999999988855544    566888887

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=89.38  E-value=3.9  Score=30.32  Aligned_cols=63  Identities=11%  Similarity=0.077  Sum_probs=42.2

Q ss_pred             ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        82 ~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      +..+++.++..  ...+++.+.|...-|..       ..+++..+.  ..+.+..++ +.+.+++++|||.++|.
T Consensus       144 ~~~~l~~~~~~--~~~~~~al~f~~~~~~~-------~~~~~~d~~~~~~i~v~~~~-~~~~~l~~~f~v~~~Ps  208 (244)
T 3q6o_A          144 XLEEIDGFFAR--NNEEYLALIFEXGGSYL-------AREVALDLSQHKGVAVRRVL-NTEANVVRKFGVTDFPS  208 (244)
T ss_dssp             CHHHHHTHHHH--CCCSEEEEEEECTTCCH-------HHHHHHHTTTCTTEEEEEEE-TTCHHHHHHHTCCCSSE
T ss_pred             cHHHHHHHhhc--CCCceEEEEEEECCcch-------HHHHHHHhccCCceEEEEEe-CchHHHHHHcCCCCCCe
Confidence            45688888864  55678888888765443       333444443  246665554 55789999999998875

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=88.90  E-value=0.59  Score=31.88  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=26.3

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV  140 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~  140 (156)
                      +..|+.++|+.|++....|++-      ++.+-.+|+.++
T Consensus         5 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~~di~~~   38 (120)
T 3fz4_A            5 LTFYEYPKCSTCRRAKAELDDL------AWDYDAIDIKKN   38 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCceEEEEeccC
Confidence            5568899999999999888753      366777888654

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=87.84  E-value=1.1  Score=32.67  Aligned_cols=39  Identities=28%  Similarity=0.362  Sum_probs=31.7

Q ss_pred             cEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           99 PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        99 ~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      ..|..|+-.-||.|....|.++++.+.+++++.+...-.
T Consensus         3 ~~I~~~~D~~CP~cy~~~~~l~~l~~~~~~~v~v~~~p~   41 (208)
T 3kzq_A            3 IKLYYVHDPMCSWCWGYKPTIEKLKQQLPGVIQFEYVVG   41 (208)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHSCTTSEEEEEEC
T ss_pred             eEEEEEECCCCchhhhhhHHHHHHHHhCCCCceEEEEec
Confidence            357778899999999999999999999876566655543

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=87.10  E-value=1.5  Score=37.20  Aligned_cols=63  Identities=10%  Similarity=0.040  Sum_probs=42.7

Q ss_pred             ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHhCCcccee
Q 031608           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        82 ~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      +.+++++++..  ...+++++.|...-       .+...+++.++..  ++.+. ...+.+.+++++|||.++|.
T Consensus       144 t~~~l~~~l~~--~~~~~vallF~~~~-------s~~~~~~~ldl~~~~~v~v~-~v~~~~~~l~~kfgV~~~Ps  208 (519)
T 3t58_A          144 KLNDIDGFFTR--NKADYLALVFERED-------SYLGREVTLDLSQYHAVAVR-RVLNTESDLVNKFGVTDFPS  208 (519)
T ss_dssp             CHHHHTTGGGS--CCCSEEEEEEECTT-------CCHHHHHHHHTTTCTTEEEE-EEETTCHHHHHHHTCCCSSE
T ss_pred             CHHHHHHHhcc--CCCCeEEEEecCCc-------hHHHHHHHHHhhccCCeeEE-EecCchHHHHHHcCCCCCCe
Confidence            35677777753  45678888888654       3355666666653  46664 44566789999999998774

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=84.68  E-value=0.62  Score=31.76  Aligned_cols=34  Identities=12%  Similarity=0.054  Sum_probs=26.0

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV  140 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~  140 (156)
                      +..|+.++|+.|++....|++-      ++.+-.+|+.++
T Consensus         6 i~iY~~p~C~~c~ka~~~L~~~------gi~~~~~di~~~   39 (120)
T 3gkx_A            6 TLFLQYPACSTCQKAKKWLIEN------NIEYTNRLIVDD   39 (120)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTT
T ss_pred             EEEEECCCChHHHHHHHHHHHc------CCceEEEecccC
Confidence            5568899999999999887752      366777887553

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=81.78  E-value=4.3  Score=29.34  Aligned_cols=40  Identities=20%  Similarity=0.367  Sum_probs=29.7

Q ss_pred             CcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        98 k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      ...|..|+-.-||.|....+.++++.+....++.+.....
T Consensus         7 ~~~I~~f~D~~CP~C~~~~~~~~~l~~~~~~~v~v~~~~~   46 (216)
T 2in3_A            7 KPVLWYIADPMCSWCWGFAPVIENIRQEYSAFLTVKIMPG   46 (216)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             ceeEEEEECCCCchhhcchHHHHHHHhcCCCCeEEEEeec
Confidence            4567778889999999999999999874333466665544

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=81.06  E-value=0.8  Score=32.16  Aligned_cols=33  Identities=0%  Similarity=-0.215  Sum_probs=25.2

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      +..|+.++|+.|++....|++-      ++.+-.+|+.+
T Consensus         4 itiY~~p~C~~crkak~~L~~~------gi~~~~idi~~   36 (141)
T 1s3c_A            4 ITIYHNPASGTSRNTLEMIRNS------GTEPTIILYLE   36 (141)
T ss_dssp             CEEECCTTCHHHHHHHHHHHHT------TCCCEEECTTT
T ss_pred             EEEEECCCChHHHHHHHHHHHc------CCCEEEEECCC
Confidence            3457899999999998887762      36677788765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	2e-07
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	1e-04
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	1e-04
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	2e-04
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	2e-04
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	5e-04
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	6e-04
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	6e-04
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	0.001
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	0.003

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 2e-07
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 74  SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFY 133
           S  L  +++   +DQ +L  ++  + ++I +   W   C+ +   L  +A +       Y
Sbjct: 1   SYMLPHLHNGWQVDQAILSEED--RVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIY 58

Query: 134 YVDVNKVSKDLVKRGNISVSIQI 156
            VD+ +V               +
Sbjct: 59  LVDITEVPDFNKMYELYDPCTVM 81

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 59  DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK 118
           D   +ALW    R  +    P+++S  LD  L +A +    +L+        +       
Sbjct: 4   DTPFDALW---QRMLARGWTPVSESR-LDDWLTQAPD--GVVLLSSDPKRTPEVSDNPVM 57

Query: 119 LEKLAAEFDTKLKFYYV 135
           + +L  EF        +
Sbjct: 58  IGELLREFPDYTWQVAI 74

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 23/62 (37%)

Query: 86  LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV 145
           L+     A     P+++    SWC  C  LKPK  +     +    F  V++    +   
Sbjct: 14  LEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKD 73

Query: 146 KR 147
           + 
Sbjct: 74  ED 75

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 86  LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDV 137
           +D  + R  +    IL+        +       + +L  EF     +    D+
Sbjct: 21  VDDWIKRVGD--GVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADL 71

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (84), Expect = 2e-04
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           + D    D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++
Sbjct: 7   LTDDS-FDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62

Query: 140 VSKDLVKRGNISVS 153
                 K G   + 
Sbjct: 63  NPGTAPKYGIRGIP 76

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 35.6 bits (81), Expect = 5e-04
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYY 134
           I+     D  L + +E  +PI++D+ A+WC  C  + P  E L+ ++  K+ F  
Sbjct: 7   IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 6e-04
 Identities = 9/84 (10%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKF 132
           ++  +   + + +     + I   +         SWC  C+  +P + +          F
Sbjct: 6   VSGFEEFHRAVEQHN--GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVF 63

Query: 133 YYVDVNKVSKDLVKRGNISVSIQI 156
            Y  V +         +   ++++
Sbjct: 64  IYCQVGEKPYWKDPNNDFRKNLKV 87

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 35.3 bits (80), Expect = 6e-04
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 75  VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYY 134
           +E   +ND      ++L +   S P+L+D+ A WC  C  + P ++++A E+  KLK   
Sbjct: 1   MEAGAVNDDT-FKNVVLES---SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVK 56

Query: 135 VDVN 138
           ++ +
Sbjct: 57  LNTD 60

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (78), Expect = 0.001
 Identities = 10/48 (20%), Positives = 17/48 (35%)

Query: 91  LRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138
           L A   + P+L  +  + C  C   K  L+     F  +     +  N
Sbjct: 9   LSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPEN 56

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 33.3 bits (75), Expect = 0.003
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 82  DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141
            + + ++I+L     ++ +LI++ A WC  C  L PK E+L A +    K  + D   ++
Sbjct: 8   VAKNYNEIVLDD---TKDVLIEFYAPWCGHCKALAPKYEELGALYA---KSEFKDRVVIA 61

Query: 142 KD 143
           K 
Sbjct: 62  KV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.84
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.83
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.82
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.82
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.81
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.81
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.8
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.8
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.79
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.79
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.79
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.79
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.78
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.75
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.74
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.73
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.69
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.67
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.63
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.62
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.62
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.62
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.61
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.6
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.59
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.57
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.53
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.53
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.52
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.41
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.39
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.34
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.33
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.33
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.31
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.31
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.28
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.28
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.27
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.23
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.22
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.21
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.17
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.11
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.11
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.05
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.91
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.82
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.72
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.72
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.56
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	98.54
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.49
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.48
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.47
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.46
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.33
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	98.29
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	98.28
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	98.25
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	98.23
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	98.19
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	98.13
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	98.08
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.98
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	97.88
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.79
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	97.76
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	97.45
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.33
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.32
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	97.09
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.02
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.0
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.97
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	96.89
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	96.59
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.55
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	96.53
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.48
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	96.45
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	96.38
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	96.22
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	96.13
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	95.99
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	95.66
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	95.57
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	95.36
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	95.19
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	94.62
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	93.36
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	88.2
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	87.47
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	84.72

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.84  E-value=7.7e-21  Score=130.83  Aligned_cols=81  Identities=26%  Similarity=0.495  Sum_probs=75.4

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ++..|++.++|++.+.++..++++++|+|||+||++|+.+.|.++++++++++++.|+.||++++++++++|+|.++|+.
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~   82 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF   82 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred             CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCCEE
Confidence            57889899999999987777899999999999999999999999999999987899999999999999999999999975


Q ss_pred             C
Q 031608          156 I  156 (156)
Q Consensus       156 ~  156 (156)
                      +
T Consensus        83 ~   83 (112)
T d1ep7a_          83 H   83 (112)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=2.5e-20  Score=127.71  Aligned_cols=79  Identities=23%  Similarity=0.468  Sum_probs=72.7

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+.+|.+.++|+..+..  .+|+++||+|||+||++|+.+.|.++++++++++.+.++.+|++++++++++|+|.++|+.
T Consensus         6 ~v~~i~~~~~~~~~l~~--~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt~   83 (111)
T d1xwaa_           6 MVYQVKDKADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTF   83 (111)
T ss_dssp             CEEECCSHHHHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             eEEEECCHHHHHHHHHh--cCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccEE
Confidence            45688899999999875  5789999999999999999999999999999998899999999999999999999999975


Q ss_pred             C
Q 031608          156 I  156 (156)
Q Consensus       156 ~  156 (156)
                      +
T Consensus        84 ~   84 (111)
T d1xwaa_          84 V   84 (111)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.2e-20  Score=126.89  Aligned_cols=77  Identities=18%  Similarity=0.382  Sum_probs=69.9

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI  156 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~  156 (156)
                      +.+|.+.++|++++..  ..+++++|+|||+||+||+.+.|.++++++++++ +.|+++|++++++++++|+|.++|+.+
T Consensus         2 v~~i~s~~~f~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~d~~~~~~~~~~V~~~Pt~~   78 (105)
T d2ifqa1           2 VKQIESKTAFQEALDA--AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKCMPTFQ   78 (105)
T ss_dssp             CEEECSHHHHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCBSSEEE
T ss_pred             eEEcCCHHHHHHHHHh--CCCCEEEEEEEcCCccchhhhhhhhhhhcccccc-ceeeecccccCHhHHHHcCceEEEEEE
Confidence            4678889999999975  4578999999999999999999999999999875 789999999999999999999999853

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=3.3e-20  Score=127.91  Aligned_cols=81  Identities=19%  Similarity=0.392  Sum_probs=74.7

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..+..+.+.++|++.+..+..+++++||+|||+||++|+.+.|.|+++++.+++ +.|+.+|++++++++++|+|.++|+
T Consensus         6 ~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~~~~~~l~~~~~V~~~Pt   84 (114)
T d1xfla_           6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELKSVASDWAIQAMPT   84 (114)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             CcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc-cceeEEEeeeceeeccccceeeeEE
Confidence            357888899999999988778899999999999999999999999999999975 9999999999999999999999997


Q ss_pred             cC
Q 031608          155 QI  156 (156)
Q Consensus       155 ~~  156 (156)
                      .+
T Consensus        85 ~~   86 (114)
T d1xfla_          85 FM   86 (114)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.2e-20  Score=126.92  Aligned_cols=77  Identities=13%  Similarity=0.288  Sum_probs=70.9

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ++..|.+.++|++.+..  +.+++++|+|||+||++|+.+.|.|+++++++++ +.|+++|++++++++++|+|.++|+.
T Consensus         2 ~v~~i~s~~~f~~~l~~--~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d~~~~l~~~~~v~~~Pt~   78 (107)
T d1gh2a_           2 GVKPVGSDPDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQCQGTAATNNISATPTF   78 (107)
T ss_dssp             CEEEECSGGGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             ceEEcCCHHHHHHHHHh--CCCCEEEEEEECCCCCCccccchhhhcccccccc-ccccccccccchhhhhhcCceeceEE
Confidence            57788899999999975  4588999999999999999999999999999985 99999999999999999999999975

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.81  E-value=3.5e-20  Score=127.91  Aligned_cols=75  Identities=21%  Similarity=0.360  Sum_probs=70.2

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .++++.+.++|++++    .++++++|+|||+||++|+.+.|.|++++++++ ++.|++||+|++++++++|||.++|+.
T Consensus         9 ~vi~i~s~~~~~~~~----~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~   83 (113)
T d1r26a_           9 SVVDVYSVEQFRNIM----SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTF   83 (113)
T ss_dssp             CCEEECCHHHHHHHH----HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ceEEeCCHHHHHHHH----cCCCeEEEEEECCCCccchhhceeccccccccc-cccccccccccchhhHHHccccCCCEE
Confidence            478899999999999    478999999999999999999999999999997 599999999999999999999999975

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.81  E-value=4.6e-20  Score=126.88  Aligned_cols=80  Identities=20%  Similarity=0.388  Sum_probs=74.3

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..++.+.+.+++++.+.++...++++||+|||+||++|+.+.|.|+++++++++ +.|+.+|++++++++.+|+|.++|+
T Consensus         4 g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~~~~l~~~~~I~~~Pt   82 (113)
T d1ti3a_           4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAMPT   82 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred             CcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC-ceEEeeeeeccccccccCeecccce
Confidence            357889999999999988777899999999999999999999999999999974 8999999999999999999999997


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        83 ~   83 (113)
T d1ti3a_          83 F   83 (113)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.80  E-value=5.2e-20  Score=124.72  Aligned_cols=73  Identities=22%  Similarity=0.500  Sum_probs=66.8

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+++ .++|++++    .++++++|+|||+||++|+.+.|.++++++++++++.|++||++++++++++|+|.++|+.
T Consensus         3 i~lt-~~~f~~~i----~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~   75 (105)
T d1nw2a_           3 MTLT-DANFQQAI----QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL   75 (105)
T ss_dssp             EEEC-TTTHHHHT----TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEE
T ss_pred             EEEC-HHHHHHHH----hCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEE
Confidence            4555 45899988    5789999999999999999999999999999998899999999999999999999999975

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.80  E-value=7.4e-20  Score=124.33  Aligned_cols=76  Identities=28%  Similarity=0.572  Sum_probs=68.3

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +...|+ .++|++.+.   .+++++||+|||+||++|+.+.|.+.++++++.+++.++.||+|++++++++|+|.++|+.
T Consensus         2 ~~~~i~-~~~f~~~v~---~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~   77 (107)
T d1dbya_           2 EAGAVN-DDTFKNVVL---ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTI   77 (107)
T ss_dssp             CCEEEC-HHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEE
T ss_pred             CceEec-HHHHHHHHH---hCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEE
Confidence            345665 668988875   5789999999999999999999999999999988899999999999999999999999974

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.79  E-value=1.2e-19  Score=122.57  Aligned_cols=74  Identities=23%  Similarity=0.552  Sum_probs=67.1

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+|++ ++|++++.   .++++++|+|||+||++|+.+.|.++++++++.+.+.++.||++++++++++|+|.++|+.
T Consensus         2 ~el~d-~~f~~~v~---~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~   75 (104)
T d1fb6a_           2 QDVND-SSWKEFVL---ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTV   75 (104)
T ss_dssp             EECCT-TTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             eECch-hhHHHHHH---cCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEE
Confidence            45664 57998875   5689999999999999999999999999999988899999999999999999999999975

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6e-20  Score=131.02  Aligned_cols=76  Identities=17%  Similarity=0.252  Sum_probs=69.8

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..|.+..++++++..  ..+++|||+|||+||++|+++.|.++++++++++.+.|+.||+|++++++++|+|.++|+.
T Consensus         5 ~~l~s~~~~dq~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~   80 (137)
T d1qgva_           5 PHLHNGWQVDQAILS--EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTV   80 (137)
T ss_dssp             CBCCSHHHHHHHHHT--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEE
T ss_pred             cccCCHHHHHHHHHh--CCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEE
Confidence            456788899999974  4678999999999999999999999999999998899999999999999999999999975

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.79  E-value=1.9e-19  Score=122.40  Aligned_cols=76  Identities=21%  Similarity=0.432  Sum_probs=67.9

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+++++ +++|++.+.   +++++++|+|||+||++|+.+.|.|++++.++++.+.|+.||+|++++++++|+|.++|+.
T Consensus         3 ~V~~lt-~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~   78 (108)
T d1thxa_           3 GVITIT-DAEFESEVL---KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPAL   78 (108)
T ss_dssp             SEEECC-GGGHHHHTT---TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEE
T ss_pred             CceECC-HHHHHHHHH---hCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEE
Confidence            467775 568887664   4689999999999999999999999999999988899999999999999999999999974

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2e-19  Score=122.19  Aligned_cols=76  Identities=25%  Similarity=0.515  Sum_probs=68.0

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .+.++++ ++|++.+.   .++++++|+|||+||+||+.+.|.+.+++.++.+++.++.+|++++++++.+|+|.++|+.
T Consensus         3 ~v~~lt~-~~f~~~v~---~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~   78 (108)
T d2trxa_           3 KIIHLTD-DSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL   78 (108)
T ss_dssp             TEEECCT-TTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEE
T ss_pred             CceECCH-HHHHHHHH---hCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEE
Confidence            4677764 57887654   4689999999999999999999999999999888899999999999999999999999974

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.78  E-value=2.1e-19  Score=121.43  Aligned_cols=74  Identities=23%  Similarity=0.481  Sum_probs=68.0

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +..|++.++|++++.    ++++++|+|||+||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|.++|+.
T Consensus         2 v~~i~s~~~f~~~i~----~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d~~~~~~~~~~V~~~Pt~   75 (103)
T d1syra_           2 VKIVTSQAEFDSIIS----QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVSEVTEKENITSMPTF   75 (103)
T ss_dssp             CEEECSHHHHHHHHH----HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             cEEeCCHHHHHHHHh----CCCcEEEEEeCCcccCcccccccchhhhhcccc-eEEEeeccccCcceeeeeeeecceEE
Confidence            356788999999995    589999999999999999999999999999975 78999999999999999999999974

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.75  E-value=2.4e-18  Score=118.25  Aligned_cols=76  Identities=26%  Similarity=0.450  Sum_probs=66.5

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC-CHHHHHHhCCcccee
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-VSKDLVKRGNISVSI  154 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~-~~~l~~~~~i~sv~~  154 (156)
                      .+.+++ .++|++++..  ..+++++|+|||+||++|+.+.|.|+++++++++ +.|+++|+++ +++++++|+|.++|+
T Consensus         7 ~v~~~~-~d~f~~~l~~--~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~~~~~~l~~~~~V~~~Pt   82 (112)
T d1f9ma_           7 KVTEVN-KDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPT   82 (112)
T ss_dssp             SEEEEC-TTTHHHHHHT--CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSSSE
T ss_pred             eeEEeC-HHHHHHHHHH--cCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeecccccccchhhHhheeeccCCE
Confidence            466775 5589999864  3468999999999999999999999999999985 8999999975 899999999999997


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        83 ~   83 (112)
T d1f9ma_          83 F   83 (112)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=8.1e-18  Score=116.34  Aligned_cols=79  Identities=14%  Similarity=0.355  Sum_probs=69.0

Q ss_pred             CCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCc
Q 031608           72 PTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus        72 p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      |....+++++ .++|++++    .+++.+||+|||+||++|+.+.|.|+++++.+.+ ++.|+.||++++++++.+|+|.
T Consensus         7 ~~~s~v~~lt-~~~f~~~i----~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~   81 (119)
T d2b5ea4           7 PEDSAVVKLA-TDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIP   81 (119)
T ss_dssp             CTTSSCEECC-TTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCC
T ss_pred             CCCCccEEcC-HHHHHHHH----hcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccc
Confidence            3334567775 56899998    4689999999999999999999999999999864 5999999999999999999999


Q ss_pred             cceec
Q 031608          151 SVSIQ  155 (156)
Q Consensus       151 sv~~~  155 (156)
                      ++|+.
T Consensus        82 ~~Pti   86 (119)
T d2b5ea4          82 GFPSL   86 (119)
T ss_dssp             SSSEE
T ss_pred             cCCeE
Confidence            99864

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.1e-18  Score=118.42  Aligned_cols=78  Identities=13%  Similarity=0.255  Sum_probs=68.3

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCC-------CChhHHhhhHHHHHHHHHhcCCeEEEEEECC-------CCHH
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMAS-------WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-------KVSK  142 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~-------WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d-------~~~~  142 (156)
                      .+.|.+.++|.+++..  .+|++++|+|||+       ||+||+++.|.++++++.+++++.|+.||++       .+.+
T Consensus         3 ~i~v~~~~e~~~~l~~--~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~   80 (119)
T d1woua_           3 EVSVSGFEEFHRAVEQ--HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND   80 (119)
T ss_dssp             EEEEESHHHHHHHHHT--TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCH
T ss_pred             eEEeCCHHHHHHHHHH--cCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhh
Confidence            3567788999999975  5689999999995       9999999999999999999888999999984       4667


Q ss_pred             HHHHhCCccceecC
Q 031608          143 DLVKRGNISVSIQI  156 (156)
Q Consensus       143 l~~~~~i~sv~~~~  156 (156)
                      ++.+|+|.++|+.|
T Consensus        81 l~~~~~V~~iPT~i   94 (119)
T d1woua_          81 FRKNLKVTAVPTLL   94 (119)
T ss_dssp             HHHHHCCCSSSEEE
T ss_pred             HHHhCCeEEEEEEE
Confidence            89999999999853

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.1e-18  Score=116.01  Aligned_cols=74  Identities=19%  Similarity=0.380  Sum_probs=65.4

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCccce
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISVS  153 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~sv~  153 (156)
                      +..+ +.++|++++.    +++++||+|||+||++|+.+.|.++++++.+.+   ++.++.||++++++++.+|+|.++|
T Consensus         9 V~~l-~~~~f~~~l~----~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   83 (120)
T d1meka_           9 VLVL-RKSNFAEALA----AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYP   83 (120)
T ss_dssp             EEEC-CTTTHHHHHH----HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSS
T ss_pred             eEEc-CHHHHHHHHh----cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCC
Confidence            4445 4679999985    589999999999999999999999999998853   5899999999999999999999998


Q ss_pred             ec
Q 031608          154 IQ  155 (156)
Q Consensus       154 ~~  155 (156)
                      +.
T Consensus        84 t~   85 (120)
T d1meka_          84 TI   85 (120)
T ss_dssp             EE
T ss_pred             eE
Confidence            64

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.67  E-value=1e-17  Score=109.05  Aligned_cols=59  Identities=19%  Similarity=0.317  Sum_probs=55.9

Q ss_pred             CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      +|+.|+.|||+||+||+.+.|.++++++++++.+.++.+|++++++++++|+|.++|+.
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~   60 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTI   60 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEE
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEE
Confidence            58889999999999999999999999999987899999999999999999999999975

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.63  E-value=5.4e-17  Score=105.97  Aligned_cols=56  Identities=14%  Similarity=0.231  Sum_probs=52.4

Q ss_pred             EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus       100 vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      .++.|||+||+||+++.|.++++++++++++.++.+|++++++++.+|||.++|+.
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~   59 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAI   59 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEE
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEE
Confidence            35569999999999999999999999988899999999999999999999999974

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.62  E-value=4.6e-16  Score=104.98  Aligned_cols=61  Identities=15%  Similarity=0.131  Sum_probs=52.0

Q ss_pred             cCCCcE-EEEEeCCCChhHHhhhHHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           95 ELSQPI-LIDWMASWCRKCIYLKPKLEKLAAE----FDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        95 ~~~k~v-lV~F~A~WC~~Ck~~~p~l~~la~~----~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..++++ ++.|||+|||||+++.|.+++++.+    +.+.+.+..+|++++++++++|+|.++|+-
T Consensus        12 ~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi   77 (107)
T d1a8la2          12 NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKI   77 (107)
T ss_dssp             TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEE
T ss_pred             hcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEE
Confidence            345555 5579999999999999999999765    334699999999999999999999999974

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=2.9e-17  Score=116.14  Aligned_cols=75  Identities=13%  Similarity=0.106  Sum_probs=65.9

Q ss_pred             EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCC-eEEEEEECCCCHHHHHHhCCccceec
Q 031608           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK-LKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~-v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ..+ +.++|++++..  ..+++|+|+|||+|||+|+.+.|.|+++++++++. +.+++||+|++++++++|+|.++|+.
T Consensus        20 ~~~-~~~~~d~~~~~--~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~   95 (132)
T d2hfda1          20 TPV-SESRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPAT   95 (132)
T ss_dssp             EEE-CHHHHHHHHHH--CSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEE
T ss_pred             ccc-ccccHHHHHHh--CCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeE
Confidence            344 46799998874  45678999999999999999999999999999874 78899999999999999999999975

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.62  E-value=3.9e-17  Score=113.48  Aligned_cols=73  Identities=11%  Similarity=0.033  Sum_probs=54.7

Q ss_pred             ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCccceecC
Q 031608           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSIQI  156 (156)
Q Consensus        82 ~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~~~  156 (156)
                      +..+++.++..  ..++++++.|||+|||+|+.+.|.|++++++|++ ++.++.||++++++++++|||.++|+.+
T Consensus        17 ~~~~ld~~~~~--~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~   90 (119)
T d2es7a1          17 EASTVDDWIKR--VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATL   90 (119)
T ss_dssp             CCC----------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEE
T ss_pred             cccCHHHHHHh--CCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEE
Confidence            35578888764  4578899999999999999999999999999987 6999999999999999999999999753

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.1e-15  Score=104.56  Aligned_cols=77  Identities=17%  Similarity=0.342  Sum_probs=62.9

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCC----CHHHHHHhC
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNK----VSKDLVKRG  148 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~----~~~l~~~~~  148 (156)
                      ++..|.+.++++..++.  ..||++||+|||+||++|+.+.|.+   .++.+.+. ++.++.+|++.    +.+++++|+
T Consensus         3 ~f~~i~~~~~~~~~l~~--~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~   79 (117)
T d2fwha1           3 NFTQIKTVDELNQALVE--AKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLN   79 (117)
T ss_dssp             CCEECCSHHHHHHHHHH--HTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTT
T ss_pred             CceEecCHHHHHHHHHH--cCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc-ceEEEecccccchhHHHHHHhhhe
Confidence            45678888999999876  4689999999999999999999998   55555554 47888888754    457889999


Q ss_pred             Cccceec
Q 031608          149 NISVSIQ  155 (156)
Q Consensus       149 i~sv~~~  155 (156)
                      |.++|+.
T Consensus        80 v~~~Pt~   86 (117)
T d2fwha1          80 VLGLPTI   86 (117)
T ss_dssp             CCSSSEE
T ss_pred             hhhceEE
Confidence            9999875

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.60  E-value=1.7e-15  Score=101.10  Aligned_cols=68  Identities=13%  Similarity=0.156  Sum_probs=58.0

Q ss_pred             hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031608           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ  155 (156)
Q Consensus        85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~  155 (156)
                      ++.+.+..  -.+...++.|+|+|||+|+.+.|.+++++..++ ++.+..+|++++++++.+|||.++|+-
T Consensus         5 ~~~e~ik~--l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~-~i~~~~vd~~~~~~l~~~~~I~~vPt~   72 (96)
T d1hyua4           5 SLLEQIRD--IDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQNEITERNVMGVPAV   72 (96)
T ss_dssp             HHHHHHHH--CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             HHHHHHHh--cCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC-ceEEEEEecccchHHHhhcccccccEE
Confidence            44444542  246677888999999999999999999998876 599999999999999999999999974

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=3.9e-16  Score=110.36  Aligned_cols=74  Identities=18%  Similarity=0.331  Sum_probs=60.5

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCccc
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISV  152 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~sv  152 (156)
                      .+..++ ..+|++++.   ..++++||.|||+||++|+.+.|.|+++++.+.+   .+.++.+|.+  .+++.+|+|.++
T Consensus        13 ~V~~l~-~~nf~~~v~---~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--~~~~~~~~v~~~   86 (140)
T d2b5ea1          13 SVFQLV-GKNHDEIVN---DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--ENDVRGVVIEGY   86 (140)
T ss_dssp             SEEEEC-TTTHHHHHH---CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--GCCCSSCCCSSS
T ss_pred             CcEEec-CcCHHHHHh---cCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc--chhccccccccC
Confidence            477776 558999986   5688999999999999999999999999998753   3566666654  567899999999


Q ss_pred             eec
Q 031608          153 SIQ  155 (156)
Q Consensus       153 ~~~  155 (156)
                      |+.
T Consensus        87 Ptl   89 (140)
T d2b5ea1          87 PTI   89 (140)
T ss_dssp             SEE
T ss_pred             CeE
Confidence            864

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.57  E-value=2.3e-15  Score=103.15  Aligned_cols=73  Identities=12%  Similarity=0.064  Sum_probs=60.0

Q ss_pred             ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC----HHHHHHhCCcccee
Q 031608           79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV----SKDLVKRGNISVSI  154 (156)
Q Consensus        79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~----~~l~~~~~i~sv~~  154 (156)
                      .+.+.+++++.+    .++++++|.||++||++|+.+.|.|++++++++..+.++.+|..++    .+++.+|+|.++|+
T Consensus        12 ~~~t~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PT   87 (115)
T d1zmaa1          12 EVTTVVRAQEAL----DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPG   87 (115)
T ss_dssp             EECCHHHHHHHH----HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             eeCCHHHHHHHH----hcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccE
Confidence            355678899998    4799999999999999999999999999999976666655544332    46789999999997


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        88 l   88 (115)
T d1zmaa1          88 F   88 (115)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=9.4e-15  Score=101.16  Aligned_cols=71  Identities=6%  Similarity=-0.087  Sum_probs=58.9

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc---CCeEEEEEECCC-----CHHHHHHhC
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNK-----VSKDLVKRG  148 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~---~~v~~~~vd~d~-----~~~l~~~~~  148 (156)
                      .++++ .++|++++    .+++.+||+|||+||+||+  +|.|+++++.+.   +.+.+++||+++     +++++.+|+
T Consensus         4 ~v~L~-~~nFd~~v----~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~   76 (122)
T d2c0ga2           4 CVDLD-ELSFEKTV----ERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK   76 (122)
T ss_dssp             CEECC-TTTHHHHH----TTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred             eEEcC-hHhHHHHH----hcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhh
Confidence            45565 56899999    4689999999999999999  499999998763   469999999853     689999998


Q ss_pred             C--cccee
Q 031608          149 N--ISVSI  154 (156)
Q Consensus       149 i--~sv~~  154 (156)
                      |  .++|+
T Consensus        77 i~~~~~PT   84 (122)
T d2c0ga2          77 VDDKNFPS   84 (122)
T ss_dssp             CCTTSCCE
T ss_pred             cccCCCCc
Confidence            8  46775

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.53  E-value=2e-14  Score=99.57  Aligned_cols=74  Identities=14%  Similarity=0.050  Sum_probs=60.5

Q ss_pred             ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChh------HHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhC
Q 031608           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRK------CIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRG  148 (156)
Q Consensus        76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~------Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~  148 (156)
                      .+++++ .++|++++.    +++.++|.||||||++      |..+.+.++.+++.+.+ ++.|++||++++++++++++
T Consensus        12 ~V~~L~-~~nf~~~l~----~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~   86 (124)
T d1a8ya1          12 RVINVN-AKNYKNVFK----KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLG   86 (124)
T ss_dssp             CCEECC-TTTHHHHHH----HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTT
T ss_pred             ccEECC-HHHHHHHHH----hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccc
Confidence            356666 668999995    4788999999999996      45556666777766654 59999999999999999999


Q ss_pred             Ccccee
Q 031608          149 NISVSI  154 (156)
Q Consensus       149 i~sv~~  154 (156)
                      |.++|+
T Consensus        87 I~~yPT   92 (124)
T d1a8ya1          87 LTEEDS   92 (124)
T ss_dssp             CCSTTC
T ss_pred             cccCCc
Confidence            999986

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.52  E-value=2.4e-16  Score=107.62  Aligned_cols=75  Identities=20%  Similarity=0.385  Sum_probs=56.2

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCC--eEEEEEECCCCHHHHHHhCCcccee
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK--LKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~--v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ++.++ .++|++++.   ++++++||+|||+||++|+++.|.|+++++.+.+.  ..++.++.++....+.+++|.++|+
T Consensus         4 V~~lt-~~nF~~~v~---~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt   79 (116)
T d2djja1           4 VTVVV-AKNYNEIVL---DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPT   79 (116)
T ss_dssp             SEECC-TTTTTTSSS---CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSE
T ss_pred             cEEcc-cCCHHHHHh---cCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCE
Confidence            34444 668888764   57899999999999999999999999999998642  2234444444445556789999886


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus        80 i   80 (116)
T d2djja1          80 I   80 (116)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.41  E-value=2.9e-13  Score=96.04  Aligned_cols=47  Identities=13%  Similarity=0.371  Sum_probs=42.0

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHH
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSK  142 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~  142 (156)
                      .||+++|+|||+||+||+.++|.|.++++++.+  ++.++.|+.|+..+
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~   75 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAE   75 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHH
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHH
Confidence            599999999999999999999999999999864  58899999987543

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.39  E-value=1e-12  Score=92.76  Aligned_cols=49  Identities=16%  Similarity=0.489  Sum_probs=42.9

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHHHH
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDL  144 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~  144 (156)
                      .||+++|+|||+||++|+.+.|.+.+++++|..  ++.++.|+.|+..+..
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~   77 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDF   77 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHH
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHH
Confidence            599999999999999999999999999999853  5999999998755433

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.34  E-value=1.3e-12  Score=92.01  Aligned_cols=44  Identities=18%  Similarity=0.392  Sum_probs=40.5

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      ..+|+++|+|||+||++|+.+.|.+.++++++++++.++.|+.+
T Consensus        27 ~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~   70 (143)
T d2b5xa1          27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMP   70 (143)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred             hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEee
Confidence            36899999999999999999999999999999888899999874

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.33  E-value=1e-12  Score=97.14  Aligned_cols=68  Identities=16%  Similarity=0.173  Sum_probs=54.6

Q ss_pred             cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      .+.++..+|+|.+++.. ...+... ++         .||++||+|||+||++|+.+.|.+.+++++|.+++.++.++.
T Consensus         5 ~l~vG~~aPdF~l~d~~-G~~~~Ls-d~---------kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~s   72 (187)
T d2cvba1           5 ELPLESPLIDAELPDPR-GGRYRLS-QF---------HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINA   72 (187)
T ss_dssp             CCCTTCBCCCCEEECTT-SCEEEGG-GC---------CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEEC
T ss_pred             CCCCCCccCccEeecCC-CCEEEHH-Hh---------CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeec
Confidence            35667888888887653 2333322 33         589999999999999999999999999999988899999875

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.5e-13  Score=94.85  Aligned_cols=62  Identities=21%  Similarity=0.330  Sum_probs=49.7

Q ss_pred             hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHH--hcCCeEEEEEECCCCHHHHHH
Q 031608           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE--FDTKLKFYYVDVNKVSKDLVK  146 (156)
Q Consensus        85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~--~~~~v~~~~vd~d~~~~l~~~  146 (156)
                      +|++.++.|+.+||+++|+|||+||++|+.++|.+.+..+.  ...++.++.||.++.+++...
T Consensus        13 ~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~   76 (135)
T d1sena_          13 TLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDF   76 (135)
T ss_dssp             CHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGG
T ss_pred             EHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHH
Confidence            57888888888999999999999999999999998655432  234689999998876665543

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=4.9e-13  Score=101.22  Aligned_cols=78  Identities=15%  Similarity=0.189  Sum_probs=65.7

Q ss_pred             cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      ..+.+|.+.++|.+.+..+ ..+.+|||.||++||++|+.+.|.|++++.+|++ +.|++||.++.+ +..+|+|..+|+
T Consensus        99 G~v~~i~~~~~f~~~v~~~-~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~-vkF~ki~~~~~~-~~~~~~i~~lPt  175 (217)
T d2trcp_          99 GFVYELETGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-VKFCKIRASNTG-AGDRFSSDVLPT  175 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-SEEEEEEHHHHT-CSTTSCGGGCSE
T ss_pred             CeEEEcCCHHHHHHHHHhc-CCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc-ceEEEEccccch-hHHhCCCCCCCe
Confidence            4578898888888888631 2355799999999999999999999999999985 999999998765 557899999987


Q ss_pred             c
Q 031608          155 Q  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus       176 l  176 (217)
T d2trcp_         176 L  176 (217)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.5e-12  Score=90.83  Aligned_cols=42  Identities=19%  Similarity=0.438  Sum_probs=35.1

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK  139 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~  139 (156)
                      ..||++||+|||+||+||+.++|.++++++.   ++.++.++.+.
T Consensus        18 ~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~---~~~vi~i~~~~   59 (136)
T d1z5ye1          18 TQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ---GIRVVGMNYKD   59 (136)
T ss_dssp             HSSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESC
T ss_pred             cCCCEEEEEEEcCcCCCcCccccchhhhhhh---hhhhccccccc
Confidence            4699999999999999999999999998764   35666666654

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=4.1e-12  Score=88.52  Aligned_cols=45  Identities=20%  Similarity=0.396  Sum_probs=40.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS  141 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~  141 (156)
                      .||+++|+|||+|||+|+.+.|.+++++++++ ++.++.|+.+++.
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~-~v~~v~v~~~~~~   67 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADV   67 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCH
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhc-cccccccccccch
Confidence            58999999999999999999999999998876 4889999987644

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.28  E-value=3.8e-12  Score=89.54  Aligned_cols=41  Identities=22%  Similarity=0.425  Sum_probs=34.2

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      +||++||+|||+||++|+.++|.+.++.+.++  +.++.|+.+
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~--~~~~~i~~~   70 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKR--FQLVGINYK   70 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT--SEEEEEEES
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccC--ceeEEEEee
Confidence            69999999999999999999999999977664  455555543

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=5.3e-12  Score=87.57  Aligned_cols=44  Identities=25%  Similarity=0.446  Sum_probs=39.0

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV  140 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~  140 (156)
                      .||++||+|||+||++|++++|.+.++++++++ +.++.|+.++.
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~v~v~~~d~   67 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-VTFVGVAGLDQ   67 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSC
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc-ccccccccccc
Confidence            599999999999999999999999999999875 67777877653

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.23  E-value=3.4e-12  Score=92.18  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=48.0

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGN  149 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i  149 (156)
                      .++.++++|||+|||||+++.|.++++++.++ ++.+..|+.+++++.+.+|..
T Consensus        53 ~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-~~~~~~i~~d~~~~~~~~~~~  105 (166)
T d1z6na1          53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLA  105 (166)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTT
T ss_pred             cCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-CCcEEEEECccCHHHHHHHHH
Confidence            68889999999999999999999999999987 588889999999999988844

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.22  E-value=1.5e-11  Score=86.04  Aligned_cols=45  Identities=16%  Similarity=0.412  Sum_probs=40.7

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKV  140 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~  140 (156)
                      .||+++|+|||+||++|+.+.|.+.+++++|..  ++.++.++.++.
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~   71 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEE   71 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCS
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhccccccccccccccccc
Confidence            599999999999999999999999999999854  588999998764

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.21  E-value=9.7e-12  Score=87.00  Aligned_cols=43  Identities=28%  Similarity=0.456  Sum_probs=38.1

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d  138 (156)
                      .||++||+|||+||++|+.+.|.+.++.++++. ++.++.|+.+
T Consensus        22 ~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~   65 (143)
T d2fy6a1          22 KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASP   65 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECT
T ss_pred             CCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeee
Confidence            689999999999999999999999999998864 5788888753

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.6e-11  Score=87.48  Aligned_cols=75  Identities=9%  Similarity=0.035  Sum_probs=61.5

Q ss_pred             cCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHHhCCcccee
Q 031608           80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKV--SKDLVKRGNISVSI  154 (156)
Q Consensus        80 i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~~--~~l~~~~~i~sv~~  154 (156)
                      |....+|++.+..|+..+|++||+|+++||++|+.+....   +++.+.+..++.++.+|.+..  .+++++|++.++|+
T Consensus        25 i~~~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pt  104 (147)
T d2dlxa1          25 LMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPY  104 (147)
T ss_dssp             TSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSE
T ss_pred             ccccCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeE
Confidence            4445578999988888999999999999999999997754   555555555689999999764  77899999999885

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.11  E-value=6.9e-11  Score=82.13  Aligned_cols=69  Identities=16%  Similarity=0.314  Sum_probs=52.1

Q ss_pred             ccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCH
Q 031608           63 EALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS  141 (156)
Q Consensus        63 ~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~  141 (156)
                      |..+|++..+... ...++.. ++         .|++++|.|||+||++|+.+.|.+.++.+++.+ ++.++.++.++++
T Consensus         2 G~~~P~f~l~~~~-G~~~~l~-~~---------~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~   70 (137)
T d1st9a_           2 GSDAPNFVLEDTN-GKRIELS-DL---------KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESK   70 (137)
T ss_dssp             CEECCCCEEECTT-SCEEEGG-GG---------TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCH
T ss_pred             cCcCCCeEEECCC-cCEEeHH-Hh---------CCCEEEEEEeeccccceeecccccccccccccccccccccccccchh
Confidence            4456777666542 2233222 22         589999999999999999999999999999875 5999999987755


Q ss_pred             H
Q 031608          142 K  142 (156)
Q Consensus       142 ~  142 (156)
                      +
T Consensus        71 ~   71 (137)
T d1st9a_          71 I   71 (137)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=8.7e-12  Score=83.39  Aligned_cols=57  Identities=16%  Similarity=0.141  Sum_probs=51.1

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      +...++|+.||++||++|+.+.|.|+++..+|.  +.++.+|.+++++++++|++. ||+
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--~~~v~vd~~~~~~l~~~y~~~-VPv   69 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLPENSTWYERYKFD-IPV   69 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--EEEEETTSSTTHHHHHHSSSS-CSE
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc--eEEEecccccCHHHHHHhccc-CCc
Confidence            457889999999999999999999999988776  678899999999999999986 875

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=5.5e-12  Score=86.87  Aligned_cols=71  Identities=10%  Similarity=0.070  Sum_probs=53.8

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--C-----eEEEEEECCCCHHHHHHhC-
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--K-----LKFYYVDVNKVSKDLVKRG-  148 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~-----v~~~~vd~d~~~~l~~~~~-  148 (156)
                      +++++ .++|++++    .+++.+||.|||+||.+|+  .|.++++++.+.+  +     |.+..+|++++++++.+++ 
T Consensus         6 ~v~L~-~~nFd~~i----~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~   78 (122)
T d1g7ea_           6 ALPLD-TVTFYKVI----PKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL   78 (122)
T ss_dssp             SCSCS-HHHHHHHG----GGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTC
T ss_pred             eEECC-HHhHHHHH----hhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcc
Confidence            44554 66999999    4689999999999998886  4888888888853  2     3344456677889999875 


Q ss_pred             -Ccccee
Q 031608          149 -NISVSI  154 (156)
Q Consensus       149 -i~sv~~  154 (156)
                       |.++|+
T Consensus        79 ~I~~yPT   85 (122)
T d1g7ea_          79 DKESYPV   85 (122)
T ss_dssp             SSSSCEE
T ss_pred             cccCCCe
Confidence             667775

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.91  E-value=1e-09  Score=79.17  Aligned_cols=55  Identities=16%  Similarity=0.401  Sum_probs=43.1

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC-C----HHHHHHhCCc
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK-V----SKDLVKRGNI  150 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~-~----~~l~~~~~i~  150 (156)
                      .||++||+||++||++|+.+.+.+.++.+.+.+ ++.++.|+++. +    .+.++++++.
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~  115 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLT  115 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCC
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCc
Confidence            589999999999999999999999999988864 57777777652 2    2335566654

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.82  E-value=1.4e-09  Score=76.98  Aligned_cols=71  Identities=18%  Similarity=0.411  Sum_probs=54.9

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV  137 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~  137 (156)
                      +.+|..+|+|.+++. ....+    .+.++.    ..||+++|.|| ++||++|....|.+.++++++.. ++.++.++.
T Consensus         2 i~vG~~aPdF~L~~~-~G~~~----~Lsd~~----~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~   72 (160)
T d2cx4a1           2 VELGEKAPDFTLPNQ-DFEPV----NLYEVL----KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISV   72 (160)
T ss_dssp             CCTTSBCCCCEECCT-TSCCE----EHHHHH----TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEES
T ss_pred             CcCCCCCcCeEeECC-CCCEE----ehHHHh----hCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccc
Confidence            356788899998874 32333    233333    46899999998 99999999999999999888875 588888887


Q ss_pred             CC
Q 031608          138 NK  139 (156)
Q Consensus       138 d~  139 (156)
                      +.
T Consensus        73 d~   74 (160)
T d2cx4a1          73 DS   74 (160)
T ss_dssp             SC
T ss_pred             cc
Confidence            65

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=1.3e-08  Score=72.25  Aligned_cols=82  Identities=15%  Similarity=0.100  Sum_probs=60.1

Q ss_pred             cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      .+.+|..+|+|.+++.. ...+    .+.++.    ..++++++.|| ++||+.|....+.|.+.+.++.+++.++.|+.
T Consensus         4 ~L~vG~~aP~f~L~~~~-g~~~----~l~~~~----~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~   74 (156)
T d2a4va1           4 ELEIGDPIPDLSLLNED-NDSI----SLKKIT----ENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSA   74 (156)
T ss_dssp             CCCTTCBCCSCEEECTT-SCEE----EHHHHH----HHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred             cCCCCCCCCCeEEECCC-CCEE----eeHHHc----CCccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeecc
Confidence            46678899999988753 3334    344444    24677777777 89999999999999999999987778889998


Q ss_pred             CCC---HHHHHHhCC
Q 031608          138 NKV---SKDLVKRGN  149 (156)
Q Consensus       138 d~~---~~l~~~~~i  149 (156)
                      |..   .+.++++++
T Consensus        75 d~~~~~~~f~~~~~l   89 (156)
T d2a4va1          75 DSVTSQKKFQSKQNL   89 (156)
T ss_dssp             CCHHHHHHHHHHHTC
T ss_pred             chhhhHHhhhcccCc
Confidence            753   334455554

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.72  E-value=8.8e-09  Score=73.77  Aligned_cols=70  Identities=9%  Similarity=0.154  Sum_probs=56.3

Q ss_pred             chhccccCCCC----CCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEE
Q 031608           60 VRVEALWPDLS----RPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFY  133 (156)
Q Consensus        60 ~~~~~~~~~~~----~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~  133 (156)
                      +.++.++|+|.    +|.. ....++.. +|         .||++||.|| ++||+.|....|.|.++.+++.+ ++.++
T Consensus         3 ~kvG~~APdF~~~~~l~d~-~g~~vsLs-d~---------~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~   71 (167)
T d1e2ya_           3 AKLNHPAPEFDDMALMPNG-TFKKVSLS-SY---------KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVI   71 (167)
T ss_dssp             CCTTSBCCCCEEEEECSSS-CEEEEEGG-GG---------TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEE
T ss_pred             ccCCCCCCCCcccccccCC-CCcEEeHH-HH---------CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEE
Confidence            56788899997    5543 34555433 34         5899999999 99999999999999999999976 69999


Q ss_pred             EEECCCC
Q 031608          134 YVDVNKV  140 (156)
Q Consensus       134 ~vd~d~~  140 (156)
                      .|+.|..
T Consensus        72 ~is~d~~   78 (167)
T d1e2ya_          72 SCSCDSE   78 (167)
T ss_dssp             EEESSCH
T ss_pred             eecCCcH
Confidence            9998763

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.56  E-value=2.5e-08  Score=71.67  Aligned_cols=70  Identities=10%  Similarity=0.134  Sum_probs=53.9

Q ss_pred             hhccccCCCCCCCc---cceEecCChhhHHHHHHHhhcCCCcEEEEEeCC-CChhHHhhhHHHHHHHHHhcC-CeEEEEE
Q 031608           61 RVEALWPDLSRPTS---VELEPINDSDHLDQILLRAQELSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT-KLKFYYV  135 (156)
Q Consensus        61 ~~~~~~~~~~~p~~---~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~-WC~~Ck~~~p~l~~la~~~~~-~v~~~~v  135 (156)
                      .+|..+|+|.+++.   .+..++... ++         .||++||.||.. ||++|..+.+.|.++++++.+ ++.++.|
T Consensus         2 lvG~~aP~F~l~~~~~g~~~~~vsls-d~---------~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~I   71 (166)
T d1we0a1           2 LIGTEVQPFRAQAFQSGKDFFEVTEA-DL---------KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSV   71 (166)
T ss_dssp             CTTCBCCCCEEEEECSSSCCEEEETT-TT---------SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred             CCCCcCCCCEEeeecCCcceeEeeHH-Hh---------CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEec
Confidence            35677788877642   233445433 23         699999999966 999999999999999999964 6999999


Q ss_pred             ECCCC
Q 031608          136 DVNKV  140 (156)
Q Consensus       136 d~d~~  140 (156)
                      +.|..
T Consensus        72 S~D~~   76 (166)
T d1we0a1          72 STDTH   76 (166)
T ss_dssp             ESSCH
T ss_pred             ccccH
Confidence            99863

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=1.9e-08  Score=71.96  Aligned_cols=68  Identities=10%  Similarity=0.139  Sum_probs=53.3

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      ..+|..+|+|.++.. ....+... +|         .||++|+.|| +.||++|....|.|.+++.++. ++.++.|..|
T Consensus        18 ~~vG~~APdF~L~~~-~g~~vsLs-d~---------~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~-~~~vv~Is~d   85 (164)
T d1qxha_          18 PQAGSKAQTFTLVAK-DLSDVTLG-QF---------AGKRKVLNIFPSIDTGVCAASVRKFNQLATEID-NTVVLCISAD   85 (164)
T ss_dssp             CCTTSBCCCCEEECT-TSCEEEGG-GG---------TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST-TEEEEEEESS
T ss_pred             CCCCCCCCCeEEECC-CCCEEeHH-Hh---------CCCeEEEEEecchhcccchHHHHHHHHHHHhhc-cceeeeEEcC
Confidence            567888999988764 33444333 34         5899999998 6799999999999999988876 4888888877


Q ss_pred             C
Q 031608          139 K  139 (156)
Q Consensus       139 ~  139 (156)
                      .
T Consensus        86 ~   86 (164)
T d1qxha_          86 L   86 (164)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.49  E-value=5.1e-08  Score=69.76  Aligned_cols=44  Identities=14%  Similarity=0.189  Sum_probs=40.6

Q ss_pred             CCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031608           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~  139 (156)
                      .||++||.|| ++||+.|....+.|.++++++.+ ++.++.|+.+.
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~   88 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDS   88 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSC
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccc
Confidence            6999999999 99999999999999999999975 59999999986

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.48  E-value=3.8e-08  Score=69.08  Aligned_cols=70  Identities=14%  Similarity=0.144  Sum_probs=50.7

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCC-CcEEE-EEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELS-QPILI-DWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD  136 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~-k~vlV-~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd  136 (156)
                      +.+|..+|+|.++... ...++.. ++         .| +++++ .|+++|||+|....+.+.++++++.. ++.++.++
T Consensus         2 l~vG~~aPdF~l~d~~-G~~~sls-d~---------~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs   70 (153)
T d1xvwa1           2 LNVGATAPDFTLRDQN-QQLVTLR-GY---------RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAIS   70 (153)
T ss_dssp             CCTTSBCCCCEEECTT-SCEEEGG-GG---------TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEE
T ss_pred             CCCcCCCcCeEEECCC-CCEEeHH-HH---------cCCCcEEEEecccccccchhhhhhhhhhhhhhhccccccccccc
Confidence            3567888999887643 3344322 33         34 44444 45699999999999999999988865 69999999


Q ss_pred             CCCC
Q 031608          137 VNKV  140 (156)
Q Consensus       137 ~d~~  140 (156)
                      .|..
T Consensus        71 ~d~~   74 (153)
T d1xvwa1          71 VGPP   74 (153)
T ss_dssp             SCCH
T ss_pred             chhh
Confidence            8763

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.3e-07  Score=69.10  Aligned_cols=44  Identities=16%  Similarity=0.149  Sum_probs=40.9

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK  139 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~  139 (156)
                      .||++||.+||+|||+|.+..|.|++|.++|.+ ++.++.+-+++
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nq   67 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ   67 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccc
Confidence            699999999999999999999999999999975 59999998875

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.46  E-value=2.4e-07  Score=68.20  Aligned_cols=67  Identities=9%  Similarity=0.103  Sum_probs=53.0

Q ss_pred             hccccCCCC----CCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEE
Q 031608           62 VEALWPDLS----RPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYV  135 (156)
Q Consensus        62 ~~~~~~~~~----~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~v  135 (156)
                      .+.++|+|+    +|. .+...++.. +|         .||++|+.|| ++||+.|..+.+.|.++.+++.. ++.++.|
T Consensus         5 ~~~PAPdFtl~a~l~d-~~g~~vsLs-d~---------~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgI   73 (194)
T d1uula_           5 DLHPAPDFNETALMPN-GTFKKVALT-SY---------KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLAC   73 (194)
T ss_dssp             TTSBCCCCEEEEECTT-SCEEEEEGG-GG---------TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEE
T ss_pred             cCCCCCCCcccccccC-CCCcEEehH-Hh---------CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEE
Confidence            355788998    443 234555433 33         5899999999 99999999999999999999975 6999999


Q ss_pred             ECCC
Q 031608          136 DVNK  139 (156)
Q Consensus       136 d~d~  139 (156)
                      +.|.
T Consensus        74 S~Ds   77 (194)
T d1uula_          74 SMDS   77 (194)
T ss_dssp             ESSC
T ss_pred             ecCc
Confidence            9875

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.33  E-value=2.7e-07  Score=65.95  Aligned_cols=74  Identities=14%  Similarity=0.208  Sum_probs=53.2

Q ss_pred             ccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCCh-hHHhhhHHHHHHHHHhc---CCeEEEEEECC
Q 031608           63 EALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCR-KCIYLKPKLEKLAAEFD---TKLKFYYVDVN  138 (156)
Q Consensus        63 ~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~-~Ck~~~p~l~~la~~~~---~~v~~~~vd~d  138 (156)
                      ..+.|+|.+... ....++.. +|         .||++||+||.+||+ .|....+.+.++.+.+.   .++.++.|.+|
T Consensus         8 ~~~~p~F~l~d~-~G~~vsl~-d~---------~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1           8 NYEVEPFTFQNQ-DGKNVSLE-SL---------KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             CEECCCCEEECT-TSCEEETG-GG---------TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCcCCCeEEEcC-CCCEEcHH-Hh---------CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            345577777654 33455433 34         599999999999997 79999999999887763   35888888886


Q ss_pred             ---CCHHHHHHh
Q 031608          139 ---KVSKDLVKR  147 (156)
Q Consensus       139 ---~~~~l~~~~  147 (156)
                         +.++.+++|
T Consensus        77 p~~Dtp~~l~~y   88 (172)
T d1xzoa1          77 PENDKPKQLKKF   88 (172)
T ss_dssp             TTTCCHHHHHHH
T ss_pred             cccchHHHHHHH
Confidence               355555544

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.29  E-value=4e-07  Score=64.73  Aligned_cols=69  Identities=13%  Similarity=0.108  Sum_probs=53.7

Q ss_pred             cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      -+.+|..+|+|.++.. +...+... +|         .||++||.|| +.||+.|....+.+.+...++. ++.++.|..
T Consensus        15 ~l~vG~~aPdF~L~~~-~g~~vsLs-d~---------~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~-~~~vv~Is~   82 (163)
T d1psqa_          15 QLQVGDKALDFSLTTT-DLSKKSLA-DF---------DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD-NTVVLTVSM   82 (163)
T ss_dssp             CCCTTSBCCCCEEECT-TSCEEEGG-GG---------TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT-TEEEEEEES
T ss_pred             CCCCCCCCCCeEEECC-CCCEEehH-Hh---------CCcEEEEEeccccccccchhhHHHHHHHHHhhc-ccceEEEEe
Confidence            4567888899988764 33444333 33         5899999999 7899999999999999888886 488999988


Q ss_pred             CC
Q 031608          138 NK  139 (156)
Q Consensus       138 d~  139 (156)
                      +.
T Consensus        83 d~   84 (163)
T d1psqa_          83 DL   84 (163)
T ss_dssp             SC
T ss_pred             cc
Confidence            75

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=98.28  E-value=2.2e-07  Score=66.75  Aligned_cols=71  Identities=15%  Similarity=0.169  Sum_probs=53.1

Q ss_pred             hhccccCCCCCCCccc----eEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEE
Q 031608           61 RVEALWPDLSRPTSVE----LEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYY  134 (156)
Q Consensus        61 ~~~~~~~~~~~p~~~~----~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~  134 (156)
                      .++..+|+|.+|....    ...+...+ +        ..++++|+.|| +.|||.|..+.+.|.+..+++.. ++.++.
T Consensus         2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd-~--------~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvg   72 (170)
T d1zofa1           2 VVTKLAPDFKAPAVLGNNEVDEHFELSK-N--------LGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIG   72 (170)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEETTT-S--------CCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEE
T ss_pred             CCCCcCCCcCcccccCCCccceEEEeHH-H--------cCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEec
Confidence            4678889998875432    12333332 2        23458999999 99999999999999999888853 699999


Q ss_pred             EECCCC
Q 031608          135 VDVNKV  140 (156)
Q Consensus       135 vd~d~~  140 (156)
                      |+.|..
T Consensus        73 is~d~~   78 (170)
T d1zofa1          73 VSIDSE   78 (170)
T ss_dssp             EESSCH
T ss_pred             ccccch
Confidence            998763

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.25  E-value=2.8e-07  Score=65.74  Aligned_cols=69  Identities=13%  Similarity=0.127  Sum_probs=51.2

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeC-CCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A-~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      ..+|..+|+|.++.. +...++.. +|         .||++|++||+ .||+.|....|.|++..++++  +.++.|..|
T Consensus        17 p~iG~~aP~F~L~~~-~g~~v~L~-d~---------~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~g--~~vv~Is~d   83 (166)
T d1xvqa_          17 PAVGSPAPAFTLTGG-DLGVISSD-QF---------RGKSVLLNIFPSVDTPVCATSVRTFDERAAASG--ATVLCVSKD   83 (166)
T ss_dssp             CCTTSBCCCCEEECT-TSCEEEGG-GG---------TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred             CCCcCCCCCeEEECC-CCCEEehH-Hh---------CCcEEEEEeeecccccccHHHHHHHhhhccccc--ccccccccc
Confidence            467888899988865 33444323 34         58999999995 578889999999988877653  788888887


Q ss_pred             CCH
Q 031608          139 KVS  141 (156)
Q Consensus       139 ~~~  141 (156)
                      ...
T Consensus        84 ~~~   86 (166)
T d1xvqa_          84 LPF   86 (166)
T ss_dssp             CHH
T ss_pred             hHH
Confidence            643

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.23  E-value=5.5e-07  Score=63.84  Aligned_cols=67  Identities=13%  Similarity=0.120  Sum_probs=51.3

Q ss_pred             ccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC
Q 031608           65 LWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV  140 (156)
Q Consensus        65 ~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~  140 (156)
                      .+|+|++|..  .+...++.. +|         .||++|+.|| +.||+.|..+.+.|.++.+++.. ++.++.|+.|..
T Consensus         2 ~AP~F~l~~~~~~~~~~vsL~-d~---------~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~   71 (158)
T d1zyea1           2 HAPYFKGTAVVSGEFKEISLD-DF---------KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSH   71 (158)
T ss_dssp             BCCCCEEEEECSSSEEEEEGG-GG---------TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCH
T ss_pred             CCCCCccceeeCCCccEEeHH-Hh---------CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCH
Confidence            4678876632  234455433 33         4899999999 99999999999999999998854 689999998864


Q ss_pred             H
Q 031608          141 S  141 (156)
Q Consensus       141 ~  141 (156)
                      .
T Consensus        72 ~   72 (158)
T d1zyea1          72 F   72 (158)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.19  E-value=5.9e-07  Score=68.08  Aligned_cols=69  Identities=13%  Similarity=0.214  Sum_probs=52.3

Q ss_pred             hccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031608           62 VEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK  139 (156)
Q Consensus        62 ~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~  139 (156)
                      +|..+|+|.+++..+.  +...+.   ..    ..|+++|+.|| ++||+.|..+.+.|.++++++.. ++.++.|++|.
T Consensus         3 IGd~aPdF~l~t~~G~--i~~~d~---~~----~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds   73 (237)
T d2zcta1           3 IGERFPEMEVTTDHGV--IKLPDH---YV----SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDS   73 (237)
T ss_dssp             TTSBCCCEEEEETTEE--EEETHH---HH----TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             CCCCCCCeEEEcCCCC--EEechH---hh----cCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCc
Confidence            5677888887764332  221211   11    36899999999 99999999999999999998864 69999999875

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=98.13  E-value=1.2e-06  Score=62.36  Aligned_cols=69  Identities=10%  Similarity=0.113  Sum_probs=53.1

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      ..+|..+|+|.++.. ....++.. ++         .||++++.|| +.||+.|..+.+.|++..+++. ++.++.|.+|
T Consensus        16 p~vG~~APdF~L~d~-~g~~v~Ls-d~---------~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~-~~~vi~iS~d   83 (164)
T d1q98a_          16 PQVGEIVENFILVGN-DLADVALN-DF---------ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS-NTIVLCISAD   83 (164)
T ss_dssp             CCTTCBCCCCEEECT-TSCEEEGG-GG---------TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST-TEEEEEEESS
T ss_pred             CCCCCCCCCcEEECC-CCCEEeeh-hh---------CCcEEEEEecCccccCcccHHHHHHHHHHHHhc-cceEEeecCC
Confidence            467888899988764 33444333 33         5899999999 5577889999999999999997 4899999987


Q ss_pred             CC
Q 031608          139 KV  140 (156)
Q Consensus       139 ~~  140 (156)
                      ..
T Consensus        84 ~~   85 (164)
T d1q98a_          84 LP   85 (164)
T ss_dssp             CH
T ss_pred             cH
Confidence            53

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.08  E-value=1.4e-06  Score=63.62  Aligned_cols=78  Identities=6%  Similarity=-0.038  Sum_probs=57.5

Q ss_pred             hhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031608           61 RVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD  136 (156)
Q Consensus        61 ~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd  136 (156)
                      .++..+|+|.++..  .+..++... +|         .||++|++|| ++||+.|..+.+.|.+..+++.. ++.++.|+
T Consensus         2 lIg~~aP~F~~~a~~~g~~~~vsLs-d~---------kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS   71 (186)
T d1n8ja_           2 LINTKIKPFKNQAFKNGEFIEVTEK-DT---------EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVS   71 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHH-HH---------TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCCcCCCCEeeeeeCCeeEEEeHH-Hh---------CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEecc
Confidence            35677788887652  234455322 33         5899999999 89999999999999999999864 69999999


Q ss_pred             CCCCH---HHHHHhC
Q 031608          137 VNKVS---KDLVKRG  148 (156)
Q Consensus       137 ~d~~~---~l~~~~~  148 (156)
                      .|...   ..+++++
T Consensus        72 ~Ds~~sh~~f~~~~~   86 (186)
T d1n8ja_          72 TDTHFTHKAWHSSSE   86 (186)
T ss_dssp             SSCHHHHHHHHHHCT
T ss_pred             ccCHHHHHHHhcccc
Confidence            98633   3455443

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=4.3e-06  Score=61.42  Aligned_cols=72  Identities=13%  Similarity=0.158  Sum_probs=57.1

Q ss_pred             cchhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEE
Q 031608           59 DVRVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYY  134 (156)
Q Consensus        59 ~~~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~  134 (156)
                      .+++|..+|+|.+|..  .....+... ++         .||++|+.|| +.||+.|..+...|.++.+++.. ++.++.
T Consensus         4 ~~~VG~~AP~F~l~~~~d~~~~~v~L~-d~---------~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vig   73 (197)
T d1qmva_           4 NARIGKPAPDFKATAVVDGAFKEVKLS-DY---------KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLG   73 (197)
T ss_dssp             TBCTTSBCCCCEEEEEETTEEEEEEGG-GG---------TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEE
T ss_pred             CCcCCCcCCCCCCcceeCCCCcEEeHH-Hh---------CCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEE
Confidence            4678899999988643  233344323 33         4899999999 99999999999999999999976 699999


Q ss_pred             EECCCC
Q 031608          135 VDVNKV  140 (156)
Q Consensus       135 vd~d~~  140 (156)
                      |+.|..
T Consensus        74 IS~D~~   79 (197)
T d1qmva_          74 VSVDSQ   79 (197)
T ss_dssp             EESSCH
T ss_pred             EecCCH
Confidence            999863

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=9.9e-06  Score=60.40  Aligned_cols=69  Identities=17%  Similarity=0.234  Sum_probs=54.1

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV  137 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~  137 (156)
                      +.+|..+|+|.+++..+  ++    .+.+.+     .++++|+.|| ++||+.|..+.+.|.+..+++.. ++.++.|.+
T Consensus         1 L~VGd~APdF~l~~~~G--~v----~Lsd~~-----g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~   69 (220)
T d1prxa_           1 LLLGDVAPNFEANTTVG--RI----RFHDFL-----GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSI   69 (220)
T ss_dssp             CCTTCBCCCCEEEETTE--EE----EHHHHH-----TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEES
T ss_pred             CCCCCCCCCcEeecCCC--CE----EeHHHc-----CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeecccc
Confidence            35688889998876543  23    233333     4688999998 89999999999999999999975 699999988


Q ss_pred             CC
Q 031608          138 NK  139 (156)
Q Consensus       138 d~  139 (156)
                      |.
T Consensus        70 Ds   71 (220)
T d1prxa_          70 DS   71 (220)
T ss_dssp             SC
T ss_pred             cc
Confidence            75

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=97.79  E-value=7.1e-06  Score=58.62  Aligned_cols=65  Identities=14%  Similarity=0.175  Sum_probs=49.0

Q ss_pred             cCCCCCCCc---cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031608           66 WPDLSRPTS---VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK  139 (156)
Q Consensus        66 ~~~~~~p~~---~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~  139 (156)
                      +|+|.++..   ....++...+ +        ..++++||.|| +.||+.|..+.+.|.+.++++.. ++.++.|+.|.
T Consensus         2 APdF~l~~~~gd~~~~~vsL~d-~--------~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~   71 (170)
T d2h01a1           2 APSFKAEAVFGDNTFGEVSLSD-F--------IGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDS   71 (170)
T ss_dssp             CCCCEEEEECTTSCEEEEEGGG-G--------TTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             CCCeEeeeecCCCCccEEehHH-H--------CCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCc
Confidence            567777632   2334454332 3        23488999999 99999999999999999998864 69999999885

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=97.76  E-value=9.7e-06  Score=60.48  Aligned_cols=71  Identities=14%  Similarity=0.139  Sum_probs=55.6

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV  137 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~  137 (156)
                      ..+|..+|+|.+++.....++.    +.+.+     .|+++|+.|| ++||+.|-.+...|.+.++++.. ++.++.|.+
T Consensus         2 i~iGd~aPdF~l~~~~~~g~i~----l~d~~-----~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~   72 (219)
T d1xcca_           2 YHLGATFPNFTAKASGIDGDFE----LYKYI-----ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSC   72 (219)
T ss_dssp             CCTTCBCCCCEECBTTCSSCEE----HHHHT-----TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEES
T ss_pred             CcCCCCCCCcEeeccCCCCcEE----eHHHc-----CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecC
Confidence            4678889999988542222232    22333     5899999999 99999999999999999999975 699999998


Q ss_pred             CC
Q 031608          138 NK  139 (156)
Q Consensus       138 d~  139 (156)
                      |.
T Consensus        73 Ds   74 (219)
T d1xcca_          73 NS   74 (219)
T ss_dssp             SC
T ss_pred             cc
Confidence            85

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=0.00012  Score=45.05  Aligned_cols=48  Identities=17%  Similarity=0.342  Sum_probs=37.8

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHH---HHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDL---VKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~---~~~~i~sv~~  154 (156)
                      ++.|+.+||+.|.+.+..|++.      ++.+..+|++++++..   +..|..++|+
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~   53 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPV   53 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc------CceeEEEeecCCHHHHHHHHhcCCCCCCE
Confidence            5668999999999999888663      4778889998877653   4568888875

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.33  E-value=0.00022  Score=43.48  Aligned_cols=48  Identities=17%  Similarity=0.367  Sum_probs=37.6

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHH---HHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD---LVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l---~~~~~i~sv~~  154 (156)
                      ++.|+.+||+.|.+.+..|++.      ++.+..+|++++++.   .++.|..++|+
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~   53 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPV   53 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCE
T ss_pred             EEEEeCCCChhHHHHHHHHHHc------CCceEEEEccCCHHHHHHHHHhCCCCcCE
Confidence            5678999999999999888653      477888888876644   46678888875

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00015  Score=49.38  Aligned_cols=43  Identities=23%  Similarity=0.391  Sum_probs=32.7

Q ss_pred             CCCcEEEEEeCCCCh-hHHhhhHHHHHHHHHhcC-----CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCR-KCIYLKPKLEKLAAEFDT-----KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~-~Ck~~~p~l~~la~~~~~-----~v~~~~vd~d  138 (156)
                      .||++||+||++||+ .|....+.+.++.+.+..     .+.+..+..+
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISID   67 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESC
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccC
Confidence            599999999999996 799999999888776531     3444555543

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.09  E-value=0.00026  Score=46.27  Aligned_cols=57  Identities=14%  Similarity=0.240  Sum_probs=39.2

Q ss_pred             cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHH-----HHhCCcccee
Q 031608           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDL-----VKRGNISVSI  154 (156)
Q Consensus        95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~-----~~~~i~sv~~  154 (156)
                      .+++  +|.|+.+|||.|++.+..|.++.-.+. .+.+..+|.+.+++..     +..|..++|.
T Consensus        10 ~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~~-~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPq   71 (105)
T d1ktea_          10 QPGK--VVVFIKPTCPFCRKTQELLSQLPFKEG-LLEFVDITATSDTNEIQDYLQQLTGARTVPR   71 (105)
T ss_dssp             CTTC--EEEEECSSCHHHHHHHHHHHHSCBCTT-SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCE
T ss_pred             ccCC--EEEEECCCCchHHHHHHHHHHhCCccc-eeeeeecccccccHHHHHHHhhccCCCcCcE
Confidence            3445  566999999999999999988654443 3778888877654322     2346666763

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00014  Score=45.67  Aligned_cols=53  Identities=26%  Similarity=0.308  Sum_probs=39.4

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC----HHHHHHh--CCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV----SKDLVKR--GNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~----~~l~~~~--~i~sv~~  154 (156)
                      +|.|..+||+.|++.+..|+++..++.+ +.+..+|++.+    .++.+..  ++.++|+
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPq   61 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETVPQ   61 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCSCE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC-ceEEEEecCCCHHHHHHHHHHhcCCCCCCCE
Confidence            5679999999999999999999888874 88888887543    3433333  3456664

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.00  E-value=0.0012  Score=40.65  Aligned_cols=48  Identities=17%  Similarity=0.142  Sum_probs=37.4

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~  154 (156)
                      |..|+.++|+.|...+..+.+   . . ++.+..+|+++++++..+||.. ||+
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~---~-~-~~~~~~vdI~~d~~l~~~y~~~-IPV   49 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ---A-R-AGAFFSVFIDDDAALESAYGLR-VPV   49 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH---T-T-CCCEEEEECTTCHHHHHHHTTT-CSE
T ss_pred             EEEECCCCccHHHHHHHHHHh---c-c-CCcEEEEEccCCHHHHHHhCCe-eeE
Confidence            566899999999887655432   2 2 3789999999999999999854 554

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.97  E-value=0.00077  Score=41.74  Aligned_cols=48  Identities=15%  Similarity=0.241  Sum_probs=35.7

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD----LVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~~~i~sv~~  154 (156)
                      |..|..+|||.|++.+..|++.      ++.+..+|++++++.    .+..|..++|+
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~   54 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQ   54 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc------CCCeEEEeccchHHHHHHHHHHhCCCCCCe
Confidence            4568899999999999888664      367788888775543    44557777774

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=96.89  E-value=0.0011  Score=45.87  Aligned_cols=42  Identities=21%  Similarity=0.511  Sum_probs=36.2

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      ++++.||.|..--||+|+.+.|.+.++.+++.+.+.+....+
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~   58 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHV   58 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEEC
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEec
Confidence            578899999999999999999999999999876666666555

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0014  Score=45.55  Aligned_cols=71  Identities=13%  Similarity=0.172  Sum_probs=46.1

Q ss_pred             chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhH-HhhhHHHHHHHHHhcC-Ce-EEEEE
Q 031608           60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKC-IYLKPKLEKLAAEFDT-KL-KFYYV  135 (156)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~C-k~~~p~l~~la~~~~~-~v-~~~~v  135 (156)
                      +.+|..+|+|.++.......+.    +.+.+     .||++|+.|| +.|++.| ..+.+.+.+....+.. ++ .++.+
T Consensus         3 ikVGd~aP~f~l~~~~~~~~v~----l~d~~-----~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~   73 (161)
T d1hd2a_           3 IKVGDAIPAVEVFEGEPGNKVN----LAELF-----KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACL   73 (161)
T ss_dssp             CCTTCBCCCCEEECSSTTCEEE----HHHHT-----TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEE
T ss_pred             CCCCCcCCCeEEEecCCCcEEE----hHHHh-----CCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEE
Confidence            3567778888776433333443    22332     5899999999 9999999 5688888876666543 23 45555


Q ss_pred             ECCC
Q 031608          136 DVNK  139 (156)
Q Consensus       136 d~d~  139 (156)
                      ..+.
T Consensus        74 s~~~   77 (161)
T d1hd2a_          74 SVND   77 (161)
T ss_dssp             ESSC
T ss_pred             ecCc
Confidence            5554

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.55  E-value=0.0026  Score=38.47  Aligned_cols=48  Identities=17%  Similarity=0.137  Sum_probs=34.0

Q ss_pred             EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC--H-HHHHHhCCcccee
Q 031608          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV--S-KDLVKRGNISVSI  154 (156)
Q Consensus       101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~--~-~l~~~~~i~sv~~  154 (156)
                      ++.|+.+|||.|++.+..|++.      ++.+..+|++++  . .+.+..|..++|+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~------~i~~~~~~v~~~~~~~~~~~~~~~~tvP~   57 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQ   57 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCeEEEEccCcHHHHHHHHHhCCccCCE
Confidence            4668999999999999888764      356666777543  2 3344567777774

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=96.53  E-value=0.0038  Score=41.74  Aligned_cols=68  Identities=12%  Similarity=0.117  Sum_probs=56.4

Q ss_pred             eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031608           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI  150 (156)
Q Consensus        77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~  150 (156)
                      +.+++ .+++..+.    +.++++++.|+.+- .....+...+.++|++|.+++.|+.+|.+++.+.++.+|+.
T Consensus         8 v~e~~-~~n~~~~~----~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~   75 (133)
T d2djka1           8 IGEIG-PETYSDYM----SAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLK   75 (133)
T ss_dssp             SEECC-HHHHHHHH----HTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCC
T ss_pred             eeccC-hhhHHHHh----cCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCC
Confidence            34554 67888888    46889888888654 46688899999999999989999999999999888888885

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.48  E-value=0.0035  Score=38.79  Aligned_cols=49  Identities=16%  Similarity=0.341  Sum_probs=39.1

Q ss_pred             EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccce
Q 031608          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVS  153 (156)
Q Consensus       102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~  153 (156)
                      |.+.++.|+.|.++....++++++.+-...+.++  ++.++++ +|||++.|
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~ei~-~ygVmstP   52 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQIL-EAGLTALP   52 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHHHH-HHTCSSSS
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CCHHHHH-HcCCcCCC
Confidence            5566899999999999999999887644555554  6677776 59999987

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.0029  Score=42.28  Aligned_cols=64  Identities=16%  Similarity=0.134  Sum_probs=53.9

Q ss_pred             hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcc
Q 031608           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS  151 (156)
Q Consensus        83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~s  151 (156)
                      .+++.+.+    ..+.|+++.|+.+- ..=....+.+.++|++|.+++.|+.+|.+++.+.++.+|+..
T Consensus         7 ~~~~~~y~----~~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e   70 (125)
T d2b5ea3           7 GSVFAQYV----ESGLPLGYLFYNDE-EELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKE   70 (125)
T ss_dssp             HHHHHHHH----HTTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCS
T ss_pred             HHHHHHHH----hcCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCc
Confidence            56888888    47999999999864 344578899999999999999999999999888999998753

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.00062  Score=49.25  Aligned_cols=43  Identities=16%  Similarity=0.443  Sum_probs=35.6

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHH---HHHHHhcCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~---~la~~~~~~v~~~~vd~d  138 (156)
                      .+++.|+.|+.-+||+|+.+.|.+.   ++.+.+++++.|..+.+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence            4789999999999999999999875   666677777778777664

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.22  E-value=0.0023  Score=43.95  Aligned_cols=43  Identities=16%  Similarity=0.166  Sum_probs=34.6

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d  138 (156)
                      +.+..|+.|+...||+|+++.|.+.++.+++.+  .+.++.....
T Consensus        23 ~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (172)
T d1z6ma1          23 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   67 (172)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeecccc
Confidence            356789999999999999999999999888853  4666655553

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0022  Score=44.75  Aligned_cols=43  Identities=16%  Similarity=0.390  Sum_probs=33.1

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHH---HHHhcCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKL---AAEFDTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~l---a~~~~~~v~~~~vd~d  138 (156)
                      .++++||.|+.-.||+|+.+.|.+..+   .+.+++.+.+......
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            467889999999999999999987444   3444556777777764

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0073  Score=42.02  Aligned_cols=41  Identities=12%  Similarity=0.156  Sum_probs=33.6

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      +.+.+|+.|+-+-||+|+++.+.++++.+..  ++.+..+++.
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~--~v~v~~~~~~   75 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDSG--KVQLRTLLVG   75 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHTT--SEEEEEEECC
T ss_pred             CCCEEEEEEECCCCcchHHHHHHHHHHHhcc--ceeEEEEecc
Confidence            3566799999999999999999999987654  4777777764

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.0095  Score=39.78  Aligned_cols=43  Identities=19%  Similarity=0.199  Sum_probs=27.2

Q ss_pred             CCCcEEEEEeCCCCh-hHHhhhHHHHHHHHHh----cCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCR-KCIYLKPKLEKLAAEF----DTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~-~Ck~~~p~l~~la~~~----~~~v~~~~vd~d  138 (156)
                      .||++||+||.+||+ .|......+..+...+    ...+.+..+..+
T Consensus        25 ~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (169)
T d2b7ka1          25 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCD   72 (169)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESC
T ss_pred             CCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccc
Confidence            699999999999996 4555555555444333    223455555443

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.0091  Score=40.91  Aligned_cols=39  Identities=13%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~  137 (156)
                      +.+.+|+.|+-+-||.|++++|.++++.+.   ++.++.+..
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~---~~~~~~~~~   63 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAF   63 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEEC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc---CceEEEEec
Confidence            478899999999999999999999998653   344444443

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.36  E-value=0.065  Score=35.34  Aligned_cols=60  Identities=17%  Similarity=0.237  Sum_probs=47.2

Q ss_pred             cCCCcEEEEEeC--CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHhCCccceec
Q 031608           95 ELSQPILIDWMA--SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNISVSIQ  155 (156)
Q Consensus        95 ~~~k~vlV~F~A--~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~~~i~sv~~~  155 (156)
                      .-.+||-+.++.  +-|+.|..+...++++++- .+++.+...|.+.  +++++++|+|...|..
T Consensus        19 ~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sdki~~~~~~~~~~e~~~~~~~~~ver~Ps~   82 (119)
T d1a8la1          19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPAT   82 (119)
T ss_dssp             GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEE
T ss_pred             hCCCCEEEEEEecCCCchhHHHHHHHHHHHHhh-CCCeEEEEeccCcchhhhHHHhhccccCceE
Confidence            456777666665  5699999999999999864 4578888888765  6789999999988753

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=95.19  E-value=0.021  Score=39.26  Aligned_cols=71  Identities=14%  Similarity=0.270  Sum_probs=45.5

Q ss_pred             chhccccCCCCCC---CccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhH-HhhhHHHHHHHHHhcC--CeEE
Q 031608           60 VRVEALWPDLSRP---TSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKC-IYLKPKLEKLAAEFDT--KLKF  132 (156)
Q Consensus        60 ~~~~~~~~~~~~p---~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~C-k~~~p~l~~la~~~~~--~v~~  132 (156)
                      +.+|..+|+++++   ...+...+...+.+         .||++||.|| +.|++.| .+..|.+....+.+..  ...+
T Consensus         4 l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~---------~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v   74 (162)
T d1tp9a1           4 IAVGDVLPDGKLAYFDEQDQLQEVSVHSLV---------AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEI   74 (162)
T ss_dssp             CCTTCBCCCCEEEEECTTSCEEEEESHHHH---------TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCE
T ss_pred             CCCCCCCCCeEEEeecCCCCceEEEHHHHh---------CCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcce
Confidence            4567778887764   22234555544433         5888888888 9999999 5677777776554431  2455


Q ss_pred             EEEECCC
Q 031608          133 YYVDVNK  139 (156)
Q Consensus       133 ~~vd~d~  139 (156)
                      +.+.++.
T Consensus        75 ~~isvd~   81 (162)
T d1tp9a1          75 LCISVND   81 (162)
T ss_dssp             EEEESSC
T ss_pred             eeeeccc
Confidence            5666654

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.62  E-value=0.014  Score=39.71  Aligned_cols=31  Identities=16%  Similarity=0.263  Sum_probs=27.5

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHh
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF  126 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~  126 (156)
                      +.+.+|+.|+-+-||.|++++|.++.+.+..
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~   55 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLG   55 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccC
Confidence            4778899999999999999999999998653

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.36  E-value=0.087  Score=33.95  Aligned_cols=57  Identities=9%  Similarity=0.069  Sum_probs=37.4

Q ss_pred             hHHHHHHHhhcCCCcEEEEEeC-----CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHH----HhCCccce
Q 031608           85 HLDQILLRAQELSQPILIDWMA-----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV----KRGNISVS  153 (156)
Q Consensus        85 ~~~~~l~~a~~~~k~vlV~F~A-----~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~----~~~i~sv~  153 (156)
                      .++.++     +..+|+| |.-     |.|+.|++.+..|.++      ++.+..+|+++.+++.+    .-+..+||
T Consensus         7 ~i~~~i-----~~~~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~~------~i~~~~~~v~~~~~~~~~l~~~t~~~TvP   72 (109)
T d1wika_           7 GLKVLT-----NKASVML-FMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKTFSNWPTYP   72 (109)
T ss_dssp             CHHHHH-----TTSSEEE-EESSTTTCCCSSTHHHHHHHHHHT------CSCEEEEESSSCHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHH-----hcCCEEE-EeCCCCCCCCChHHHHHHHHHHhc------CCCceEEEecccHHHHHHHHHhcCCCCCC
Confidence            566677     2445444 654     8899999999887643      36777889988765533    23444554

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.20  E-value=0.44  Score=34.47  Aligned_cols=41  Identities=12%  Similarity=0.159  Sum_probs=33.3

Q ss_pred             CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031608           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN  138 (156)
Q Consensus        96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d  138 (156)
                      .-+.||=.|++.||..|=.....|.+|++.  ++|..+.+.+|
T Consensus         4 ~~~aVVElFTSqgCssCPpAd~~L~~L~~~--~~Vi~La~HVd   44 (225)
T d2axoa1           4 AVKGVVELFTSQGCASCPPADEALRKMIQK--GDVVGLSYHVD   44 (225)
T ss_dssp             CCCCEEEEEECTTCTTCHHHHHHHHHHHHH--TSSEEEEEECS
T ss_pred             CCCcEEEEeeCCCCCCCHHHHHHHHHhhCC--CCEEEEEeccc
Confidence            345566678999999999999999999875  35888888775

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=87.47  E-value=0.88  Score=30.63  Aligned_cols=52  Identities=6%  Similarity=0.071  Sum_probs=33.0

Q ss_pred             hccccCCCCCCCcc--ceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHH
Q 031608           62 VEALWPDLSRPTSV--ELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKL  122 (156)
Q Consensus        62 ~~~~~~~~~~p~~~--~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~l  122 (156)
                      .|..+|+++++...  ....++    +.+++     .||+||+.|| +.+.+-|-.++..+.+.
T Consensus         3 ~Gd~~Pdftl~~~~~~~~~~~s----lsd~~-----~gk~VVL~f~P~afTp~Ct~e~~~~~~~   57 (163)
T d1nm3a2           3 EGKKVPQVTFRTRQGDKWVDVT----TSELF-----DNKTVIVFSLPGAFTPTCSSSHLPRYNE   57 (163)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEE----HHHHH-----TTSEEEEEEESCSSCHHHHHTHHHHHHH
T ss_pred             CCCCCCCeEEEEEcCCCceEEE----HHHHh-----CCCeEEEEEEeccccccchhhhhhhhhh
Confidence            35667777765332  233443    33333     4788777776 89999999987665444

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.72  E-value=0.74  Score=28.16  Aligned_cols=37  Identities=14%  Similarity=0.134  Sum_probs=27.8

Q ss_pred             EEEEeCCCCh------hHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHH
Q 031608          101 LIDWMASWCR------KCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD  143 (156)
Q Consensus       101 lV~F~A~WC~------~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l  143 (156)
                      ++-|+++||+      .|.++.-.|+..      ++.+-.+|++.+++.
T Consensus         4 i~vy~ts~~~~~~~~~~~~r~~~lL~~~------~I~y~~iDi~~d~~~   46 (93)
T d1t1va_           4 LRVYSTSVTGSREIKSQQSEVTRILDGK------RIQYQLVDISQDNAL   46 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT------TCCCEEEETTSCHHH
T ss_pred             EEEEEccCcCChhhHHHHHHHHHHHHHC------CCceEEEEecCchhH
Confidence            4557999996      788887777663      478889999876544