Citrus Sinensis ID: 031610

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHSMLDLNSSKNTHK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHcccccccHHHHHHHccccccccEEEccccccccccccccccccccHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHcccccEEEEEcccccccEEEEcccccccccccccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHccccccccEEEcccccccccHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MGDLEKVKNEALEIIGqfenlprlvvfdldytlwpfyceccyedeipylypHAKGILEALKEKGIHVAvasrspapdiAKTFLHKLGIHSMFVPMVVIYMYTkdssnasssestcaifhfhpkrscsiFMFQQVMIEMFQNRHsmldlnssknthk
Flexible Loop (DISEMBL)
MGDLEKVKNEALEIigqfenlprlVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHsmldlnssknthk
Low Complexity Region (SEG)
MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDssnasssesTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHSMLDLNSSKNTHK
Disordered region (IsUnstruct)
**********ALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTK**********TCAIFHFHPKRSCSIFMFQQVMIEMFQN***************
Disordered Region (DISOPRED)
**********ALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHSMLDLNSSKNTH*
Disordered Region (DISEMBL)
MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKD********STCAIFHFHPKRSCSIFMFQQVMIEMFQNRHSMLDL********
Disordered Region (DISPRO)
**DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRH*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHSMLDLNSSKNTHK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
O94279	172	Putative magnesium-depend	yes	no	0.525	0.476	0.330	3e-06
Q9D967	164	Magnesium-dependent phosp	yes	no	0.474	0.451	0.314	2e-05
Q86V88	176	Magnesium-dependent phosp	yes	no	0.474	0.420	0.314	3e-05
P40081	178	Putative magnesium-depend	yes	no	0.5	0.438	0.28	0.0002

>sp|O94279|MGDP1_SCHPO Putative magnesium-dependent phosphatase P8B7.31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.31 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 21/103 (20%)

Query: 21  LPRLVVFDLDYTLWPFYCEC------------------CYEDEIPYLYPHAKGILEALKE 62
            P+ VVFDLDYTLWP + +                    Y  EI + Y    GIL+ L+ 
Sbjct: 7   FPKCVVFDLDYTLWPLWIDTHVTAPFKPSKNDPGVLIDKYGTEICF-YSDITGILQELRN 65

Query: 63  KGIHVAVASRSPAPDIAKTFLH--KLGIHSMFVPMVVIYMYTK 103
           + + + VASR+ AP  AK  L+  K+ I     P +  + Y K
Sbjct: 66  QKVTLCVASRTCAPKYAKQALNLMKVPIDGSLKPAIEFFTYVK 108

Magnesium-dependent phosphatase which may act as a tyrosine phosphatase.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 4EC: 8

>sp|Q9D967|MGDP1_MOUSE Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
           LP+L VFDLDYTLWPF+ +   +                +   LYP    +L  L+  G
Sbjct: 3  RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLG 62

Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          + VA ASR+     A   L    +   F+
Sbjct: 63 VPVAAASRTSEIQGANQLLELFDLGKYFI 91

Magnesium-dependent phosphatase which may act as a tyrosine phosphatase.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|Q86V88|MGDP1_HUMAN Magnesium-dependent phosphatase 1 OS=Homo sapiens GN=MDP1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)

Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
           LP+L VFDLDYTLWPF+ +   +                +   LYP    +L+ L+  G
Sbjct: 3  RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLG 62

Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          +  A ASR+   + A   L    +   FV
Sbjct: 63 VPGAAASRTSEIEGANQLLELFDLFRYFV 91

Magnesium-dependent phosphatase which may act as a tyrosine phosphatase.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P40081|MGDP1_YEAST Putative magnesium-dependent phosphatase YER134C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YER134C PE=1 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 22/100 (22%)

Query: 22  PRLVVFDLDYTLWPFYCEC--------------------CYEDEIPYLYPHAKGILEALK 61
           P +  FDLDYT+WP YC+                     C +     +Y     IL  LK
Sbjct: 5   PDVAAFDLDYTIWPCYCDTHLHGPFKPVKSSNGEVLTIICRDGYELTIYKDIPRILGDLK 64

Query: 62  EKGIHVAVASRSPAPDIAKTFLH--KLGIHSMFVPMVVIY 99
           + G+ +  ASR+ AP+IA+  L   K+    +  P+  ++
Sbjct: 65  DNGVKLMTASRTWAPEIAQEILKIFKVKYAGVVTPLANLF 104

Magnesium-dependent phosphatase which may act as a tyrosine phosphatase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
255563310	189	Magnesium-dependent phosphatase, putativ	0.647	0.534	0.696	4e-35
225465793	165	PREDICTED: magnesium-dependent phosphata	0.621	0.587	0.690	4e-32
388504702	176	unknown [Lotus japonicus]	0.75	0.664	0.564	1e-31
388515721	176	unknown [Lotus japonicus]	0.75	0.664	0.564	1e-31
115455203	173	Os03g0737400 [Oryza sativa Japonica Grou	0.647	0.583	0.656	1e-31
4587681	151	hypothetical protein [Arabidopsis thalia	0.801	0.827	0.503	2e-31
449438224	188	PREDICTED: magnesium-dependent phosphata	0.628	0.521	0.653	2e-31
222625757	327	hypothetical protein OsJ_12493 [Oryza sa	0.647	0.308	0.656	2e-31
79555268	190	haloacid dehalogenase-like hydrolase dom	0.570	0.468	0.707	6e-31
351726361	191	uncharacterized protein LOC100305763 [Gl	0.628	0.513	0.663	6e-31

>gi|255563310|ref|XP_002522658.1| Magnesium-dependent phosphatase, putative [Ricinus communis] gi|223538134|gb|EEF39745.1| Magnesium-dependent phosphatase, putative [Ricinus communis]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 82/102 (80%), Gaps = 1/102 (0%)

Query: 1   MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
           MGD EK+K+EAL+IIG F+ LPRLVVFDLDYTLWPFYCEC  + E+P LYPHAKGIL AL
Sbjct: 1   MGD-EKIKDEALQIIGMFQMLPRLVVFDLDYTLWPFYCECRSKREMPSLYPHAKGILYAL 59

Query: 61  KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT 102
           K+KGI VA+ASRSP PDIA TFL KL + SMFV   +   +T
Sbjct: 60  KDKGIDVAIASRSPTPDIANTFLDKLSLKSMFVAQEIFSSWT 101

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465793|ref|XP_002269091.1| PREDICTED: magnesium-dependent phosphatase 1 [Vitis vinifera] gi|296087423|emb|CBI34012.3| unnamed protein product [Vitis vinifera]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 78/97 (80%)

Query: 6   KVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI 65
           +VK EAL+IIG  + LPRLVVFDLDYTLWPFYCEC  + E+P LYPHA+GIL ALKEKGI
Sbjct: 5   RVKEEALQIIGLCQVLPRLVVFDLDYTLWPFYCECRSKREMPSLYPHAEGILYALKEKGI 64

Query: 66  HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT 102
            +A+ASRSP PDIAKTFL KLGI SMFV   +   ++
Sbjct: 65  DMAIASRSPTPDIAKTFLDKLGIKSMFVAQEIFSSWS 101

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504702|gb|AFK40417.1| unknown [Lotus japonicus]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 83/117 (70%)

Query: 1   MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
           M D+EKVK EAL+++G F+ LPRLVVFDLDYTLWPFYCEC  + + P LYPH KGI+ AL
Sbjct: 1   MEDMEKVKAEALQMMGVFQVLPRLVVFDLDYTLWPFYCECRSKRDTPSLYPHVKGIMYAL 60

Query: 61  KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAI 117
           K +GI VA+AS+SP PDIA TFL KL I SMFV   + Y +   + +     S+  +
Sbjct: 61  KGEGIDVAIASKSPTPDIATTFLDKLSISSMFVTKEIFYSWQNKTDHFQKIHSSTGV 117

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515721|gb|AFK45922.1| unknown [Lotus japonicus]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 83/117 (70%)

Query: 1   MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
           M D+EKVK EAL+++G F+ LPRLVVFDLDYTLWPFYCEC  + + P LYPH KGI+ AL
Sbjct: 1   MEDVEKVKAEALQMMGVFQVLPRLVVFDLDYTLWPFYCECRSKRDTPSLYPHVKGIMYAL 60

Query: 61  KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAI 117
           K +GI VA+AS+SP PDIA TFL KL I SMFV   + Y +   + +     S+  +
Sbjct: 61  KGEGIDVAIASKSPTPDIATTFLDKLSISSMFVTKEIFYSWQNKTDHFQKIHSSTGV 117

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115455203|ref|NP_001051202.1| Os03g0737400 [Oryza sativa Japonica Group] gi|29788863|gb|AAP03409.1| unknown protein [Oryza sativa Japonica Group] gi|37999990|gb|AAR07077.1| unknown protein [Oryza sativa Japonica Group] gi|108710967|gb|ABF98762.1| magnesium-dependent phosphatase-1 family protein, expressed [Oryza sativa Japonica Group] gi|113549673|dbj|BAF13116.1| Os03g0737400 [Oryza sativa Japonica Group] gi|215686587|dbj|BAG88840.1| unnamed protein product [Oryza sativa Japonica Group] gi|218193717|gb|EEC76144.1| hypothetical protein OsI_13434 [Oryza sativa Indica Group]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%), Gaps = 1/102 (0%)

Query: 1   MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
           MGD E+VK EAL+I+G F+ LPRLVVFDLDYTLWPFYCEC  + E P LY HAKGI+ AL
Sbjct: 1   MGD-ERVKAEALQILGLFQALPRLVVFDLDYTLWPFYCECRSKRESPSLYRHAKGIMFAL 59

Query: 61  KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT 102
           +EKGI +A+ASRSP PDIAK F+ KL I SMFV   +   +T
Sbjct: 60  REKGIDMAIASRSPTPDIAKVFIDKLEIKSMFVAQEIFSSWT 101

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4587681|gb|AAD25851.1| hypothetical protein [Arabidopsis thaliana]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/141 (50%), Positives = 88/141 (62%), Gaps = 16/141 (11%)

Query: 5   EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64
           EKVK+EA++I+G F+ LPRLVVFDLDYTLWPFYCEC  + E+P +YP AKGIL ALKEKG
Sbjct: 4   EKVKDEAMQIMGMFQILPRLVVFDLDYTLWPFYCECRSKREMPSMYPQAKGILSALKEKG 63

Query: 65  IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKR 124
           I +A+ASRSP  DIA TFL KL I  MFV  V                S   +       
Sbjct: 64  IEMAIASRSPTSDIANTFLDKLNIKPMFVAKV----------------SKMGVTSILVGD 107

Query: 125 SCSIFMFQQVMIEMFQNRHSM 145
             ++  F+Q + E  QN +S+
Sbjct: 108 GVTLGAFRQGLTEFTQNHNSI 128

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438224|ref|XP_004136889.1| PREDICTED: magnesium-dependent phosphatase 1-like [Cucumis sativus] gi|449478847|ref|XP_004155433.1| PREDICTED: magnesium-dependent phosphatase 1-like [Cucumis sativus]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 77/98 (78%)

Query: 5   EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64
           + VK EAL+IIG F+ LP+LVVFDLDYTLWPFYCEC  + E+P +YPHAK IL ALK+KG
Sbjct: 4   DTVKAEALQIIGMFQVLPKLVVFDLDYTLWPFYCECRSKREMPSMYPHAKSILYALKDKG 63

Query: 65  IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT 102
           I +A+ASRSP  DIAKTF+ KLGI SMFV   +   +T
Sbjct: 64  IDLAIASRSPTSDIAKTFIGKLGIESMFVAQEIFSSWT 101

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222625757|gb|EEE59889.1| hypothetical protein OsJ_12493 [Oryza sativa Japonica Group]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%), Gaps = 1/102 (0%)

Query: 1   MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
           MGD E+VK EAL+I+G F+ LPRLVVFDLDYTLWPFYCEC  + E P LY HAKGI+ AL
Sbjct: 155 MGD-ERVKAEALQILGLFQALPRLVVFDLDYTLWPFYCECRSKRESPSLYRHAKGIMFAL 213

Query: 61  KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT 102
           +EKGI +A+ASRSP PDIAK F+ KL I SMFV   +   +T
Sbjct: 214 REKGIDMAIASRSPTPDIAKVFIDKLEIKSMFVAQEIFSSWT 255

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79555268|ref|NP_179027.2| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] gi|48310074|gb|AAT41748.1| At2g14110 [Arabidopsis thaliana] gi|50198845|gb|AAT70452.1| At2g14110 [Arabidopsis thaliana] gi|330251187|gb|AEC06281.1| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 73/89 (82%)

Query: 5  EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64
          EKVK+EA++I+G F+ LPRLVVFDLDYTLWPFYCEC  + E+P +YP AKGIL ALKEKG
Sbjct: 4  EKVKDEAMQIMGMFQILPRLVVFDLDYTLWPFYCECRSKREMPSMYPQAKGILSALKEKG 63

Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          I +A+ASRSP  DIA TFL KL I  MFV
Sbjct: 64 IEMAIASRSPTSDIANTFLDKLNIKPMFV 92

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726361|ref|NP_001236356.1| uncharacterized protein LOC100305763 [Glycine max] gi|255626551|gb|ACU13620.1| unknown [Glycine max]

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 76/98 (77%)

Query: 5   EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64
           EKVK+EA++II  FE LP+LVVFDLDYTLWPFYCEC  + EIP LYPHAKGIL ALKEKG
Sbjct: 6   EKVKSEAVQIIEAFEVLPKLVVFDLDYTLWPFYCECRSKREIPSLYPHAKGILLALKEKG 65

Query: 65  IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT 102
           I +A+ASRSP  DIA  FL+KL +  MFV   +   +T
Sbjct: 66  IDIAIASRSPTADIATAFLNKLNLTPMFVSQEIYSSWT 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2059440	190	AT2G14110 "AT2G14110" [Arabido	0.570	0.468	0.707	6.2e-30
ASPGD|ASPL0000029748	215	AN5512 [Emericella nidulans (t	0.435	0.316	0.392	3.6e-09
POMBASE|SPBP8B7.31	172	SPBP8B7.31 "acid phosphatase (	0.391	0.354	0.343	4.3e-06
UNIPROTKB|F1SGN7	164	LOC100520440 "Uncharacterized	0.480	0.457	0.344	7.8e-06
CGD|CAL0000216	175	orf19.6929 [Candida albicans (	0.423	0.377	0.337	6.6e-05
UNIPROTKB|Q59SU0	175	CaO19.14191 "Putative uncharac	0.423	0.377	0.337	6.6e-05
UNIPROTKB|F1MXF2	164	MDP-1 "Uncharacterized protein	0.467	0.445	0.329	0.00012
SGD|S000000936	178	YER134C "Magnesium-dependent a	0.115	0.101	0.611	0.00026
RGD|1311147	164	Mdp1 "magnesium-dependent phos	0.455	0.432	0.344	0.0004

TAIR|locus:2059440 AT2G14110 "AT2G14110" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 63/89 (70%), Positives = 73/89 (82%)

Query:     5 EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64
             EKVK+EA++I+G F+ LPRLVVFDLDYTLWPFYCEC  + E+P +YP AKGIL ALKEKG
Sbjct:     4 EKVKDEAMQIMGMFQILPRLVVFDLDYTLWPFYCECRSKREMPSMYPQAKGILSALKEKG 63

Query:    65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
             I +A+ASRSP  DIA TFL KL I  MFV
Sbjct:    64 IEMAIASRSPTSDIANTFLDKLNIKPMFV 92

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000029748 AN5512 [Emericella nidulans (taxid:162425)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 33/84 (39%), Positives = 47/84 (55%)

Query:    21 LPRLVVFDLDYTLWPFYCEC--------------CYE--DEIPYLYPHAKGILEALKEKG 64
             LP+L+ FDLDYTLWPF+ +               C +  +E    YPH   IL + K + 
Sbjct:    29 LPKLIAFDLDYTLWPFWVDTHVTPPIKARDNNSRCTDKWNESFAFYPHVNSILTSCKSRS 88

Query:    65 IHVAVASRSPAPDIAKTFLHKLGI 88
             I +A+ASR+ APD+A+  L +L I
Sbjct:    89 IPLALASRTHAPDLARDMLKQLHI 112

GO:0008150 "biological_process" evidence=ND

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPBP8B7.31 SPBP8B7.31 "acid phosphatase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 78 (32.5 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query:    42 YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH--KLGIHSMFVPMVVIY 99
             Y  EI + Y    GIL+ L+ + + + VASR+ AP  AK  L+  K+ I     P +  +
Sbjct:    46 YGTEICF-YSDITGILQELRNQKVTLCVASRTCAPKYAKQALNLMKVPIDGSLKPAIEFF 104

Query:   100 MYTK 103
              Y K
Sbjct:   105 TYVK 108

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016791 "phosphatase activity" evidence=ISM

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1SGN7 LOC100520440 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 106 (42.4 bits), Expect = 7.8e-06, P = 7.8e-06
 Identities = 31/90 (34%), Positives = 42/90 (46%)

Query:    19 ENLPRLVVFDLDYTLWPFYCECCYED---------------EIPYLYPHAKGILEALKEK 63
             E LP+L VFDLDYTLWPF+ +   +                +   LYP    +LE L+  
Sbjct:     2 ERLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTIRDRRGQTVRLYPEVPEVLERLQGL 61

Query:    64 GIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
             G+ VA ASR+   + A   L    +   FV
Sbjct:    62 GVPVAAASRTGEVEGANQLLELFDLVRHFV 91

GO:0016791 "phosphatase activity" evidence=IEA

CGD|CAL0000216 orf19.6929 [Candida albicans (taxid:5476)]

 Score = 103 (41.3 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 28/83 (33%), Positives = 40/83 (48%)

Query:    22 PRLVVFDLDYTLWPFYCECC----------------YEDEIPYLYPHAKGILEALKEKGI 65
             P+ VVFDLDYTLWP +C+                  Y+ ++ + Y   + I+  L E  +
Sbjct:     7 PKAVVFDLDYTLWPCWCDTHIMTPLKSVSPTTVVDRYDFQLSF-YKDVESIIRELVENDV 65

Query:    66 HVAVASRSPAPDIAKTFLHKLGI 88
              +  ASR+  P IAK  L  L I
Sbjct:    66 KIIAASRTATPHIAKQLLSMLHI 88

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003993 "acid phosphatase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59SU0 CaO19.14191 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 103 (41.3 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 28/83 (33%), Positives = 40/83 (48%)

Query:    22 PRLVVFDLDYTLWPFYCECC----------------YEDEIPYLYPHAKGILEALKEKGI 65
             P+ VVFDLDYTLWP +C+                  Y+ ++ + Y   + I+  L E  +
Sbjct:     7 PKAVVFDLDYTLWPCWCDTHIMTPLKSVSPTTVVDRYDFQLSF-YKDVESIIRELVENDV 65

Query:    66 HVAVASRSPAPDIAKTFLHKLGI 88
              +  ASR+  P IAK  L  L I
Sbjct:    66 KIIAASRTATPHIAKQLLSMLHI 88

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1MXF2 MDP-1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 101 (40.6 bits), Expect = 0.00012, P = 0.00012
 Identities = 29/88 (32%), Positives = 40/88 (45%)

Query:    21 LPRLVVFDLDYTLWPFYCECCYEDEIP---------------YLYPHAKGILEALKEKGI 65
             LP+L VFDLDYTLWPF+ +   +                    LYP    +LE L+  G+
Sbjct:     4 LPKLAVFDLDYTLWPFWVDTHVDPPFHKNSDGTVRDRRGQSIQLYPEVPEVLERLRGLGV 63

Query:    66 HVAVASRSPAPDIAKTFLHKLGIHSMFV 93
              +A ASR+   + A   L    +   FV
Sbjct:    64 PIAAASRTGEVEGANQLLELFDLVRYFV 91

GO:0016791 "phosphatase activity" evidence=IEA

SGD|S000000936 YER134C "Magnesium-dependent acid phosphatase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 76 (31.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query:    22 PRLVVFDLDYTLWPFYCE 39
             P +  FDLDYT+WP YC+
Sbjct:     5 PDVAAFDLDYTIWPCYCD 22

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016311 "dephosphorylation" evidence=IEA

GO:0035335 "peptidyl-tyrosine dephosphorylation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0003993 "acid phosphatase activity" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1311147 Mdp1 "magnesium-dependent phosphatase 1" [Rattus norvegicus (taxid:10116)]

 Score = 98 (39.6 bits), Expect = 0.00040, P = 0.00040
 Identities = 31/90 (34%), Positives = 42/90 (46%)

Query:    21 LPRLVVFDLDYTLWPFYCECCYEDEIPY-----------------LYPHAKGILEALKEK 63
             LP+L VFDLDYTLWPF+ +  + D  P+                 LYP    IL  L+  
Sbjct:     4 LPKLAVFDLDYTLWPFWVDT-HVDP-PFHKSSDGTVRDRRGQDIRLYPEVPEILGRLQSL 61

Query:    64 GIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
             G+ VA ASR+   + A   L    +   F+
Sbjct:    62 GVPVAAASRTSEIEGANQLLELFDLGKYFI 91


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.140   0.441    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      156       147   0.00091  103 3  11 22  0.38    31
                                                     30  0.50    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  150 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.34u 0.09s 13.43t   Elapsed:  00:00:02
  Total cpu time:  13.34u 0.09s 13.43t   Elapsed:  00:00:03
  Start:  Mon May 20 22:47:05 2013   End:  Mon May 20 22:47:08 2013

GO:0005575 "cellular_component" evidence=ND

GO:0016311 "dephosphorylation" evidence=IDA

GO:0016791 "phosphatase activity" evidence=IDA

GO:0030389 "fructosamine metabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031286001 SubName- Full=Chromosome undetermined scaffold_55, whole genome shotgun sequence; (165 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
pfam12689	164	pfam12689, Acid_PPase, Acid Phosphatase	5e-28
cd01427	139	cd01427, HAD_like, Haloacid dehalogenase-like hydr	8e-11
TIGR01681	128	TIGR01681, HAD-SF-IIIC, HAD-superfamily phosphatas	4e-08
TIGR01685	174	TIGR01685, MDP-1, magnesium-dependent phosphatase-	8e-08
COG0561	264	COG0561, Cof, Predicted hydrolases of the HAD supe	8e-05
TIGR01662	132	TIGR01662, HAD-SF-IIIA, HAD-superfamily hydrolase,	3e-04
COG0560	212	COG0560, SerB, Phosphoserine phosphatase [Amino ac	4e-04
pfam13344	101	pfam13344, Hydrolase_6, Haloacid dehalogenase-like	4e-04
COG0637	221	COG0637, COG0637, Predicted phosphatase/phosphohex	6e-04
TIGR00099	256	TIGR00099, Cof-subfamily, Cof subfamily of IIB sub	0.002
COG0546	220	COG0546, Gph, Predicted phosphatases [General func	0.003
TIGR01668	170	TIGR01668, YqeG_hyp_ppase, HAD superfamily (subfam	0.004

>gnl|CDD|221713 pfam12689, Acid_PPase, Acid Phosphatase

 Score =  101 bits (253), Expect = 5e-28
 Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 17/85 (20%)

Query: 21 LPRLVVFDLDYTLWPFYCEC----------------CYEDEIPYLYPHAKGILEALKEKG 64
          LP+L+VFDLDYTLWPF+C+                    +E+  LYP    IL+ LKEKG
Sbjct: 2  LPKLIVFDLDYTLWPFWCDTHVGPPFKKDKNGTVVDRRGEEL-SLYPDVPSILQELKEKG 60

Query: 65 IHVAVASRSPAPDIAKTFLHKLGIH 89
          I +AVASR+ APD A+  L  L I+
Sbjct: 61 ITIAVASRTDAPDWARELLKLLHIN 85

This family contains phosphatase enzymes and other proteins of the HAD superfamily. It includes MDP-1 which is a eukaryotic magnesium-dependent acid phosphatase. Length = 164

>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases

 Score = 56.2 bits (136), Expect = 8e-11
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 24  LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83
            V+FDLD TL         E E   LYP  K  L+ LKEKGI +A+A+     ++ +  L
Sbjct: 1   AVLFDLDGTLLDSE-PGIAEIEELELYPGVKEALKELKEKGIKLALATNKSRREVLE-LL 58

Query: 84  HKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEM 138
            +LG+   F P++                         P            +  +
Sbjct: 59  EELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD----KLLAALKLL 109

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases. Length = 139

>gnl|CDD|233526 TIGR01681, HAD-SF-IIIC, HAD-superfamily phosphatase, subfamily IIIC

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEI---PYLYPHAKGILEALKEKGIHVAVASRSPAPDIA 79
          +++VFDLD TLW        ED I          +  L+ LK+ G  +A+AS +  P +A
Sbjct: 1  KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVA 60

Query: 80 ----KTFLHKLGI---HSMFVPMVVIY 99
              K F     I      F P+ + Y
Sbjct: 61 YELLKIFEDFGIIFPLAEYFDPLTIGY 87

This model represents the IIIC subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate nucleophile hydrolases. Subfamily III (also including IIIA - TIGR01662 and IIIB - pfam03767) contains sequences which do not contain either of the insert domains (between the 1st and 2nd conserved catalytic motifs, subfamily I - TIGR01493, TIGR01509, TIGR01549, TIGR01488, TIGR01494, TIGR01658, TIGR01544 and TIGR01545, or between the 2nd and 3rd, subfamily II - TIGR01460 and TIGR01484). Subfamily IIIC contains five relatively distantly related clades: a family of viral proteins (TIGR01684), a family of eukaryotic proteins called MDP-1 and a family of archaeal proteins most closely related to MDP-1 (TIGR01685), a family of bacteria including the Streptomyces FkbH protein (TIGR01686), and a small clade including the Pasteurella BcbF and EcbF proteins. The overall lack of species overlap among these clades may indicate a conserved function, but the degree of divergence between the clades and the differences in archetecture outside of the domain in some clades warns against such a conclusion. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC. Length = 128

>gnl|CDD|233529 TIGR01685, MDP-1, magnesium-dependent phosphatase-1

 Score = 48.7 bits (116), Expect = 8e-08
 Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 28/111 (25%)

Query: 21  LPRLVVFDLDYTLWPFYC------------------ECCYEDEIPYLYPHAKGILEALKE 62
           LPR++VFDLD TLW  Y                         E+  L    + +L+ LK+
Sbjct: 1   LPRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVT-LIKEVRDVLQTLKD 59

Query: 63  KGIHVAVASRSPAPDIAKTFLHKLGI---------HSMFVPMVVIYMYTKD 104
            G ++A AS +  P+ A   L    I         HS+F   + IY   K 
Sbjct: 60  AGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKA 110

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues. Length = 174

>gnl|CDD|223635 COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 10/72 (13%)

Query: 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT 81
           +L+ FDLD TL            I    P  K  L  L+EKG+ V +A+  P PD   +
Sbjct: 3  IKLLAFDLDGTL------LDSNKTIS---PETKEALARLREKGVKVVLATGRPLPD-VLS 52

Query: 82 FLHKLGIHSMFV 93
           L +LG+    +
Sbjct: 53 ILEELGLDGPLI 64

Length = 264

>gnl|CDD|233517 TIGR01662, HAD-SF-IIIA, HAD-superfamily hydrolase, subfamily IIIA

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 23 RLVVFDLDYTL--WPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71
          + VV DLD TL     Y +   EDE   LYP     L  LKE G  V + +
Sbjct: 1  KGVVLDLDGTLTDDVPYVD--DEDER-ILYPEVPDALAELKEAGYKVVIVT 48

This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class III subfamilies are characterized by the lack of any domains located between either between the first and second conserved catalytic motifs (as in the Class I subfamilies, TIGR01493, TIGR01509, TIGR01488 and TIGR01494) or between the second and third conserved catalytic motifs (as in the Class II subfamilies, TIGR01460 and TIGR01484) of the superfamily domain. The IIIA subfamily contains five major clades: histidinol-phosphatase (TIGR01261) and histidinol-phosphatase-related protein (TIGR00213) which together form a subfamily (TIGR01656), DNA 3'-phosphatase (TIGR01663, TIGR01664), YqeG (TIGR01668) and YrbI (TIGR01670). In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme [Unknown function, Enzymes of unknown specificity]. Length = 132

>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and metabolism]

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 44  DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           +E   L P A+ ++ ALK  G  V + S      + +    +LGI  + 
Sbjct: 73  EEFLRLTPGAEELVAALKAAGAKVVIISGGFTF-LVEPIAERLGIDYVV 120

Length = 212

>gnl|CDD|205524 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 16/69 (23%)

Query: 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDIAK 80
           +FD+D  LW                P A   L AL+  G  V      +SRS     AK
Sbjct: 1  FLFDVDGVLWRG----------GEPIPGAAEALNALRAAGKPVVFVTNNSSRSRE-QYAK 49

Query: 81 TFLHKLGIH 89
            L KLG  
Sbjct: 50 -KLRKLGFD 57

This family is part of the HAD superfamily. Length = 101

>gnl|CDD|223710 COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV 97
             P    +LE LK +GI +AVAS SP    A+  L +LG+   F  +V 
Sbjct: 87  PIPGVVELLEQLKARGIPLAVASSSP-RRAAERVLARLGLLDYFDVIVT 134

Length = 221

>gnl|CDD|232824 TIGR00099, Cof-subfamily, Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 12/66 (18%)

Query: 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKTF 82
          L+  DLD TL         +  I    P  K  L  L+EKGI V +A+ R       K  
Sbjct: 1  LIFIDLDGTL------LNDDHTIS---PSTKEALAKLREKGIKVVLATGRPYK--EVKNI 49

Query: 83 LHKLGI 88
          L +LG+
Sbjct: 50 LKELGL 55

This subfamily of sequences falls within the Class-IIB subfamily (TIGR01484) of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. The use of the name "Cof" as an identifier here is arbitrary and refers to the E. coli Cof protein. This subfamily is notable for the large number of recent paralogs in many species. Listeria, for instance, has 12, Clostridium, Lactococcus and Streptococcus pneumoniae have 8 each, Enterococcus and Salmonella have 7 each, and Bacillus subtilus, Mycoplasma, Staphylococcus and E. coli have 6 each. This high degree of gene duplication is limited to the gamma proteobacteria and low-GC gram positive lineages. The profusion of genes in this subfamily is not coupled with a high degree of divergence, so it is impossible to determine an accurate phylogeny at the equivalog level. Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars. Possibly the diversification of genes in this subfamily represents the diverse sugars and polysaccharides that various bacteria find in their biological niches. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences [Unknown function, Enzymes of unknown specificity]. Length = 256

>gnl|CDD|223620 COG0546, Gph, Predicted phosphatases [General function prediction only]

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 18  FENLPRLVVFDLDYTLWPFYCEC---CYEDEIP-YLYPHAKGILEALKEKGIHVAVASRS 73
            E L      +    L     E     Y + +   L+P  K +L ALK  G  + + +  
Sbjct: 55  IERLLGEADEEAAAELVERLREEFLTAYAELLESRLFPGVKELLAALKSAGYKLGIVTNK 114

Query: 74  PAPDIAKTFLHKLGIHSMF 92
           P        L  LG+   F
Sbjct: 115 PE-RELDILLKALGLADYF 132

Length = 220

>gnl|CDD|233519 TIGR01668, YqeG_hyp_ppase, HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84
          VV D D TL                YP  +  +E LK  G  + + S +     AK    
Sbjct: 28 VVLDKDNTLVYPD--------HNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEK 79

Query: 85 KLGI 88
           LGI
Sbjct: 80 ALGI 83

This family of hypothetical proteins is a member of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterized members of this subfamily (TIGR01662) and most characterized members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs, all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	99.77
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	99.76
PRK14988	224	GMP/IMP nucleotidase; Provisional	99.76
PRK13288	214	pyrophosphatase PpaX; Provisional	99.76
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	99.76
COG0546	220	Gph Predicted phosphatases [General function predi	99.76
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	99.75
PRK13226	229	phosphoglycolate phosphatase; Provisional	99.75
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	99.73
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	99.73
PLN02575	381	haloacid dehalogenase-like hydrolase	99.72
PRK11587	218	putative phosphatase; Provisional	99.72
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	99.72
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	99.72
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	99.71
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	99.7
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	99.7
PRK13223	272	phosphoglycolate phosphatase; Provisional	99.7
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	99.7
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	99.69
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	99.68
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	99.67
PLN02940	382	riboflavin kinase	99.67
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	99.67
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	99.67
PRK13222	226	phosphoglycolate phosphatase; Provisional	99.67
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	99.66
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	99.66
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	99.66
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	99.66
PRK09449	224	dUMP phosphatase; Provisional	99.66
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	99.65
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	99.64
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	99.64
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	99.64
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	99.63
PRK06769	173	hypothetical protein; Validated	99.63
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	99.61
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	99.61
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	99.61
PRK13225	273	phosphoglycolate phosphatase; Provisional	99.59
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	99.59
PRK10563	221	6-phosphogluconate phosphatase; Provisional	99.59
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	99.58
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	99.57
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	99.57
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	99.56
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	99.55
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	99.55
PRK10748	238	flavin mononucleotide phosphatase; Provisional	99.54
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	99.54
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.53
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	99.53
TIGR02726	169	phenyl_P_delta phenylphosphate carboxylase, delta	99.53
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	99.52
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	99.51
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	99.5
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	99.5
COG4996	164	Predicted phosphatase [General function prediction	99.5
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	99.5
PHA03398	303	viral phosphatase superfamily protein; Provisional	99.46
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.44
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	99.43
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	99.42
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	99.41
KOG3085	237	consensus Predicted hydrolase (HAD superfamily) [G	99.41
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	99.4
PHA02530	300	pseT polynucleotide kinase; Provisional	99.4
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.4
PHA02597	197	30.2 hypothetical protein; Provisional	99.38
PRK10976	266	putative hydrolase; Provisional	99.37
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	99.37
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	99.34
PRK10513	270	sugar phosphate phosphatase; Provisional	99.34
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	99.33
COG1778	170	Low specificity phosphatase (HAD superfamily) [Gen	99.33
PRK01158	230	phosphoglycolate phosphatase; Provisional	99.32
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.31
PRK11133	322	serB phosphoserine phosphatase; Provisional	99.31
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	99.29
KOG2914	222	consensus Predicted haloacid-halidohydrolase and r	99.27
COG0241	181	HisB Histidinol phosphatase and related phosphatas	99.27
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	99.27
PLN02954	224	phosphoserine phosphatase	99.26
PF08645	159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	99.26
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	99.23
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.23
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	99.21
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.21
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	99.2
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	99.13
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	99.13
PRK13582	205	thrH phosphoserine phosphatase; Provisional	99.13
PLN02645	311	phosphoglycolate phosphatase	99.12
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	99.12
PTZ00174	247	phosphomannomutase; Provisional	99.11
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	99.11
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	99.11
PLN02887	580	hydrolase family protein	99.11
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	99.11
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	99.1
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	99.1
PLN02811	220	hydrolase	99.09
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	99.09
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	99.09
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	99.03
PTZ00445	219	p36-lilke protein; Provisional	99.03
KOG3109	244	consensus Haloacid dehalogenase-like hydrolase [Ge	99.02
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	99.01
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	99.0
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	99.0
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	98.99
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	98.95
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	98.95
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	98.94
PRK08238	479	hypothetical protein; Validated	98.91
PRK10444	248	UMP phosphatase; Provisional	98.9
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	98.9
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	98.9
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	98.89
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	98.87
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	98.8
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	98.74
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	98.74
PLN02423	245	phosphomannomutase	98.73
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	98.7
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	98.69
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	98.63
TIGR02471	236	sucr_syn_bact_C sucrose phosphate synthase, sucros	98.6
PF05152	297	DUF705: Protein of unknown function (DUF705); Inte	98.59
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	98.59
PRK11590	211	hypothetical protein; Provisional	98.57
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	98.5
COG3769	274	Predicted hydrolase (HAD superfamily) [General fun	98.49
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	98.46
KOG1615	227	consensus Phosphoserine phosphatase [Amino acid tr	98.42
TIGR01545	210	YfhB_g-proteo haloacid dehalogenase superfamily, s	98.41
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	98.4
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	98.33
PLN03017	366	trehalose-phosphatase	98.29
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	98.27
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	98.22
KOG4549	144	consensus Magnesium-dependent phosphatase [General	98.21
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	98.21
PRK14501	726	putative bifunctional trehalose-6-phosphate syntha	98.2
COG4229	229	Predicted enolase-phosphatase [Energy production a	98.19
PLN02151	354	trehalose-phosphatase	98.16
KOG2882	306	consensus p-Nitrophenyl phosphatase [Inorganic ion	98.14
PLN02205	854	alpha,alpha-trehalose-phosphate synthase [UDP-form	98.09
COG3882	574	FkbH Predicted enzyme involved in methoxymalonyl-A	98.06
PLN02382	413	probable sucrose-phosphatase	98.04
PLN02580	384	trehalose-phosphatase	98.0
PF06888	234	Put_Phosphatase: Putative Phosphatase; InterPro: I	98.0
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	97.97
PF08235	157	LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209	97.96
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	97.91
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	97.89
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	97.88
TIGR02244	343	HAD-IG-Ncltidse HAD superfamily (subfamily IG) hyd	97.78
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	97.77
COG1877	266	OtsB Trehalose-6-phosphatase [Carbohydrate transpo	97.75
PF06941	191	NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosol	97.6
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	97.55
PF05116	247	S6PP: Sucrose-6F-phosphate phosphohydrolase; Inter	97.49
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	97.47
PLN03063	797	alpha,alpha-trehalose-phosphate synthase (UDP-form	97.39
PF02358	235	Trehalose_PPase: Trehalose-phosphatase; InterPro:	97.37
KOG3120	256	consensus Predicted haloacid dehalogenase-like hyd	97.36
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	97.36
PLN03064	934	alpha,alpha-trehalose-phosphate synthase (UDP-form	97.23
COG2503	274	Predicted secreted acid phosphatase [General funct	97.19
COG4359	220	Uncharacterized conserved protein [Function unknow	97.12
KOG3040	262	consensus Predicted sugar phosphatase (HAD superfa	97.08
PRK10671	834	copA copper exporting ATPase; Provisional	97.08
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	96.81
PF06437	408	ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR0	96.76
KOG3189	252	consensus Phosphomannomutase [Lipid transport and	96.68
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	96.65
KOG1618	389	consensus Predicted phosphatase [General function	96.61
PLN02645	311	phosphoglycolate phosphatase	96.57
PF11019	252	DUF2608: Protein of unknown function (DUF2608); In	96.37
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	96.05
PRK01122	679	potassium-transporting ATPase subunit B; Provision	96.03
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	96.01
PRK14010	673	potassium-transporting ATPase subunit B; Provision	95.7
PF04312	138	DUF460: Protein of unknown function (DUF460); Inte	95.31
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	95.13
PF05761	448	5_nucleotid: 5' nucleotidase family; InterPro: IPR	95.08
KOG2116	738	consensus Protein involved in plasmid maintenance/	94.98
COG4087	152	Soluble P-type ATPase [General function prediction	94.92
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	94.73
KOG2882	306	consensus p-Nitrophenyl phosphatase [Inorganic ion	94.64
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	94.47
PF13242	75	Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OY	94.07
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	93.9
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	93.81
PRK15122	903	magnesium-transporting ATPase; Provisional	93.79
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	93.78
PLN02177	497	glycerol-3-phosphate acyltransferase	93.77
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	93.71
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	93.2
COG4850	373	Uncharacterized conserved protein [Function unknow	93.17
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	93.03
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	92.46
KOG4549	144	consensus Magnesium-dependent phosphatase [General	92.46
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	92.21
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	92.17
COG3700	237	AphA Acid phosphatase (class B) [General function	92.11
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	92.03
TIGR02886	106	spore_II_AA anti-sigma F factor antagonist. The an	91.97
KOG2630	254	consensus Enolase-phosphatase E-1 [Amino acid tran	91.92
KOG0202	972	consensus Ca2+ transporting ATPase [Inorganic ion	91.76
PRK10444	248	UMP phosphatase; Provisional	91.75
KOG1605	262	consensus TFIIF-interacting CTD phosphatase, inclu	91.53
KOG0204	1034	consensus Calcium transporting ATPase [Inorganic i	91.5
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	91.39
KOG2469	424	consensus IMP-GMP specific 5'-nucleotidase [Nucleo	91.29
cd07041	109	STAS_RsbR_RsbS_like Sulphate Transporter and Anti-	90.81
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	90.34
TIGR02468	1050	sucrsPsyn_pln sucrose phosphate synthase/possible	90.18
COG5083	580	SMP2 Uncharacterized protein involved in plasmid m	89.69
PF01740	117	STAS: STAS domain; InterPro: IPR002645 The STAS (S	89.47
KOG2470	510	consensus Similar to IMP-GMP specific 5'-nucleotid	89.45
PLN02499	498	glycerol-3-phosphate acyltransferase	89.21
TIGR01494	499	ATPase_P-type ATPase, P-type (transporting), HAD s	89.16
COG0731	296	Fe-S oxidoreductases [Energy production and conver	88.61
TIGR01652	1057	ATPase-Plipid phospholipid-translocating P-type AT	88.33
cd06844	100	STAS Sulphate Transporter and Anti-Sigma factor an	87.62
cd07043	99	STAS_anti-anti-sigma_factors Sulphate Transporter	87.48
TIGR00377	108	ant_ant_sig anti-anti-sigma factor. This superfami	86.65
KOG0203	1019	consensus Na+/K+ ATPase, alpha subunit [Inorganic	85.51
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	82.56
COG2216	681	KdpB High-affinity K+ transport system, ATPase cha	82.41
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	82.24
PLN03190	1178	aminophospholipid translocase; Provisional	82.2
PRK13762	322	tRNA-modifying enzyme; Provisional	81.7
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	81.22
COG2044	120	Predicted peroxiredoxins [General function predict	80.77
TIGR00815	563	sulP high affinity sulphate transporter 1. (2) SO4	80.63
KOG0323	635	consensus TFIIF-interacting CTD phosphatases, incl	80.62
PF00072	112	Response_reg: Response regulator receiver domain;	80.42

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=99.77  E-value=2.7e-18  Score=129.45  Aligned_cols=81  Identities=9%  Similarity=0.188  Sum_probs=75.3

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++....||+|+++..+++++++.|+++.
T Consensus       107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~-~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l  185 (248)
T PLN02770        107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPREN-AELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTF  185 (248)
T ss_pred             CCcCccHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEE
Confidence            4689999999999999999999999999888 799999999999999999999988999999999999999999998875


Q ss_pred             eE
Q 031610          127 SI  128 (156)
Q Consensus       127 ~v  128 (156)
                      +|
T Consensus       186 ~v  187 (248)
T PLN02770        186 VF  187 (248)
T ss_pred             EE
Confidence            44

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=99.76  E-value=4.5e-18  Score=125.54  Aligned_cols=80  Identities=14%  Similarity=0.251  Sum_probs=73.8

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++||+.++|+.|+++|++++|+||+.... +...++.+++..+|+.++++++.+..||+|+++..+++++++.|+++++
T Consensus        94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~  172 (221)
T TIGR02253        94 RVYPGVRDTLMELRESGYRLGIITDGLPVK-QWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVM  172 (221)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEE
Confidence            589999999999999999999999998777 6889999999999999999999999999999999999999999988654


Q ss_pred             E
Q 031610          128 I  128 (156)
Q Consensus       128 v  128 (156)
                      |
T Consensus       173 i  173 (221)
T TIGR02253       173 V  173 (221)
T ss_pred             E
Confidence            3

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=99.76  E-value=4.9e-18  Score=126.29  Aligned_cols=82  Identities=13%  Similarity=0.121  Sum_probs=75.3

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++.+..||+|+++..+++++++.|++|+
T Consensus        92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~-~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l  170 (224)
T PRK14988         92 AVLREDTVPFLEALKASGKRRILLTNAHPHN-LAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL  170 (224)
T ss_pred             CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHH-HHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence            4589999999999999999999999998887 688899999999999999998889999999999999999999999986


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      .|+
T Consensus       171 ~ig  173 (224)
T PRK14988        171 FID  173 (224)
T ss_pred             EEc
Confidence            544

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=99.76  E-value=4.2e-18  Score=125.39  Aligned_cols=82  Identities=11%  Similarity=0.164  Sum_probs=75.3

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|++|+++|++++|+||+.... +...++.+|+..+|+.++++++....||+|.++..+++++++.|++++
T Consensus        81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~  159 (214)
T PRK13288         81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDT-VEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEAL  159 (214)
T ss_pred             cccCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEE
Confidence            4689999999999999999999999999887 799999999999999999988888899999999999999999988876


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      .|+
T Consensus       160 ~iG  162 (214)
T PRK13288        160 MVG  162 (214)
T ss_pred             EEC
Confidence            543

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=99.76  E-value=5.4e-18  Score=128.65  Aligned_cols=81  Identities=20%  Similarity=0.278  Sum_probs=75.3

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++....||+|+++..+++++++.|+++.
T Consensus       108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~-~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l  186 (260)
T PLN03243        108 YRLRPGSREFVQALKKHEIPIAVASTRPRRY-LERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCI  186 (260)
T ss_pred             cccCCCHHHHHHHHHHCCCEEEEEeCcCHHH-HHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeE
Confidence            4689999999999999999999999999888 799999999999999999999888899999999999999999999876


Q ss_pred             eE
Q 031610          127 SI  128 (156)
Q Consensus       127 ~v  128 (156)
                      +|
T Consensus       187 ~I  188 (260)
T PLN03243        187 VF  188 (260)
T ss_pred             EE
Confidence            54

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=99.76  E-value=1.1e-17  Score=124.03  Aligned_cols=94  Identities=17%  Similarity=0.294  Sum_probs=80.3

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|.+|+++|++++|+||++... +...++.+|+..+|+.++++++....||+|.++..++++++..|++..
T Consensus        88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~-~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l  166 (220)
T COG0546          88 SRLFPGVKELLAALKSAGYKLGIVTNKPERE-LDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL  166 (220)
T ss_pred             CccCCCHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence            3689999999999999999999999999998 799999999999999999988889999999999999999999975554


Q ss_pred             eEeeehhhhHHHhhcccc
Q 031610          127 SIFMFQQVMIEMFQNRHS  144 (156)
Q Consensus       127 ~v~~~~~~~~~~~~~~~~  144 (156)
                         |.+|....+.-++..
T Consensus       167 ---~VGDs~~Di~aA~~A  181 (220)
T COG0546         167 ---MVGDSLNDILAAKAA  181 (220)
T ss_pred             ---EECCCHHHHHHHHHc
Confidence               455554444433333

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=99.75  E-value=2.2e-18  Score=127.93  Aligned_cols=81  Identities=25%  Similarity=0.309  Sum_probs=75.8

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..+.||+.++|+.|+++|++++++|++++.. +...++.+|+..+|+.++++++....||+|++|..+++++|+.|++|.
T Consensus        85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~-~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv  163 (221)
T COG0637          85 LKPIPGVVELLEQLKARGIPLAVASSSPRRA-AERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV  163 (221)
T ss_pred             CCCCccHHHHHHHHHhcCCcEEEecCChHHH-HHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence            4689999999999999999999999999887 799999999999999999999888899999999999999999999996


Q ss_pred             eE
Q 031610          127 SI  128 (156)
Q Consensus       127 ~v  128 (156)
                      .|
T Consensus       164 vi  165 (221)
T COG0637         164 VV  165 (221)
T ss_pred             EE
Confidence            54

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=99.75  E-value=7.4e-18  Score=125.60  Aligned_cols=82  Identities=13%  Similarity=0.149  Sum_probs=74.2

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++....||+|+++..+++++|++|+++.
T Consensus        94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l  172 (229)
T PRK13226         94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYL-ARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCV  172 (229)
T ss_pred             CeeCCCHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEE
Confidence            4689999999999999999999999999877 688899999999999888888788899999999999999999999876


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      +|+
T Consensus       173 ~IG  175 (229)
T PRK13226        173 YVG  175 (229)
T ss_pred             EeC
Confidence            544

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=99.73  E-value=2e-17  Score=122.54  Aligned_cols=82  Identities=16%  Similarity=0.206  Sum_probs=75.3

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++|++++|+||..... +...++.+++..+|+.++++++.+..||+|+++..+++++|+.|+++.
T Consensus        91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~  169 (222)
T PRK10826         91 RPLLPGVREALALCKAQGLKIGLASASPLHM-LEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCV  169 (222)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHH-HHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence            4689999999999999999999999999887 699999999999999999988888999999999999999999998876


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      .|+
T Consensus       170 ~ig  172 (222)
T PRK10826        170 ALE  172 (222)
T ss_pred             EEc
Confidence            443

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=99.73  E-value=1.9e-17  Score=120.51  Aligned_cols=82  Identities=16%  Similarity=0.164  Sum_probs=74.8

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      .+++|++.++|+.|+++|++++++||.+... +...++.+|+..+|+.++++++.+..||+|+++..+++++++.|+++.
T Consensus        91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~-~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~  169 (198)
T TIGR01428        91 LPPHPDVPAGLRALKERGYRLAILSNGSPAM-LKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVL  169 (198)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEE
Confidence            3578999999999999999999999999887 688999999999999999999999999999999999999999998875


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      .|+
T Consensus       170 ~vg  172 (198)
T TIGR01428       170 FVA  172 (198)
T ss_pred             EEe
Confidence            433

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=99.72  E-value=3.5e-17  Score=129.30  Aligned_cols=82  Identities=16%  Similarity=0.211  Sum_probs=76.5

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++|++++|+||++... +...++.+|+..+|+.++++++....||+|+++..+++++++.|++|.
T Consensus       215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~-~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl  293 (381)
T PLN02575        215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKT-LENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCI  293 (381)
T ss_pred             CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence            4689999999999999999999999999888 799999999999999999999988899999999999999999999986


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      +|+
T Consensus       294 ~IG  296 (381)
T PLN02575        294 VFG  296 (381)
T ss_pred             EEc
Confidence            543

>PRK11587 putative phosphatase; Provisional

Probab=99.72  E-value=4.5e-17  Score=120.42  Aligned_cols=82  Identities=15%  Similarity=0.146  Sum_probs=70.7

Q ss_pred             CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ...++||+.++|+.|+++|++++|+||++... ....++..++ .+|+.++++++....||+|.++..+++++|+.|+++
T Consensus        81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~-~~~~l~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~  158 (218)
T PRK11587         81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPV-ASARHKAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQEC  158 (218)
T ss_pred             CceeCcCHHHHHHHHHHcCCcEEEEcCCCchH-HHHHHHhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccE
Confidence            34689999999999999999999999998776 5777888887 456777777777889999999999999999999998


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      .+|+
T Consensus       159 l~ig  162 (218)
T PRK11587        159 VVVE  162 (218)
T ss_pred             EEEe
Confidence            6553

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=99.72  E-value=1.8e-17  Score=113.19  Aligned_cols=101  Identities=24%  Similarity=0.324  Sum_probs=78.9

Q ss_pred             ceEEEecCCccccccccccccCC---CcccCCcHHHHHHHHHHCCCeEEEEcCC-CChhHHHHHHHHcC-------CCCC
Q 031610           23 RLVVFDLDYTLWPFYCECCYEDE---IPYLYPHAKGILEALKEKGIHVAVASRS-PAPDIAKTFLHKLG-------IHSM   91 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~~~~---~~~l~~~~~~~L~~L~~~G~~v~i~T~~-~~~~~~~~~l~~l~-------l~~~   91 (156)
                      |+++||||||||+.+....+...   ..+++||+.++|+.|+++|++++++||+ .... +...++.++       +..+
T Consensus         1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~-~~~~l~~~~~~~~i~~l~~~   79 (128)
T TIGR01681         1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHV-AYELLKIFEDFGIIFPLAEY   79 (128)
T ss_pred             CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHH-HHHHHHhccccccchhhHhh
Confidence            57999999999985321011100   0047999999999999999999999999 6555 678888888       7888


Q ss_pred             CceEEEecccCCCCCCHHHHHHHHHHhC--CCCcCceeE
Q 031610           92 FVPMVVIYMYTKDSSNASSSESTCAIFH--FHPKRSCSI  128 (156)
Q Consensus        92 f~~~~~~~~~~~~kp~p~~~~~~~~~~~--~~~~~~~~v  128 (156)
                      |+.+++++    .+|+|+++..+++++|  +.|+++++|
T Consensus        80 f~~~~~~~----~~pkp~~~~~a~~~lg~~~~p~~~l~i  114 (128)
T TIGR01681        80 FDPLTIGY----WLPKSPRLVEIALKLNGVLKPKSILFV  114 (128)
T ss_pred             hhhhhhcC----CCcHHHHHHHHHHHhcCCCCcceEEEE
Confidence            88877654    3689999999999999  999987643

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=99.72  E-value=6.2e-17  Score=119.51  Aligned_cols=82  Identities=17%  Similarity=0.158  Sum_probs=74.3

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC--CCCceEEEecccCCCCCCHHHHHHHHHHhCCC-Cc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH--SMFVPMVVIYMYTKDSSNASSSESTCAIFHFH-PK  123 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~--~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~-~~  123 (156)
                      .+++||+.++|+.|+++|++++|+||+.... +...++.+++.  .+|+.++++++....||+|+.+..+++++++. |+
T Consensus        86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~-~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~  164 (220)
T TIGR03351        86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDT-AERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQ  164 (220)
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence            4699999999999999999999999999888 79999999998  89999999888888999999999999999997 67


Q ss_pred             CceeEe
Q 031610          124 RSCSIF  129 (156)
Q Consensus       124 ~~~~v~  129 (156)
                      ++++|+
T Consensus       165 ~~~~ig  170 (220)
T TIGR03351       165 SVAVAG  170 (220)
T ss_pred             HeEEeC
Confidence            765544

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=99.71  E-value=5.9e-17  Score=118.87  Aligned_cols=81  Identities=17%  Similarity=0.342  Sum_probs=74.5

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++....||+|+.+..+++++++.|+++.
T Consensus        84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~  162 (213)
T TIGR01449        84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPL-ARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV  162 (213)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence            4689999999999999999999999998877 799999999999999999888888899999999999999999998865


Q ss_pred             eE
Q 031610          127 SI  128 (156)
Q Consensus       127 ~v  128 (156)
                      .|
T Consensus       163 ~i  164 (213)
T TIGR01449       163 YV  164 (213)
T ss_pred             Ee
Confidence            43

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=99.70  E-value=5.7e-17  Score=115.95  Aligned_cols=115  Identities=26%  Similarity=0.326  Sum_probs=90.7

Q ss_pred             CCceEEEecCCcccccccccc-----------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCC-CChhHHHHH
Q 031610           21 LPRLVVFDLDYTLWPFYCECC-----------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRS-PAPDIAKTF   82 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~-----------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~-~~~~~~~~~   82 (156)
                      ++++++||+|+|||+++...-                 ..+....++||+.++|+.|+++|++++++||+ .... ++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~-~~~~   79 (174)
T TIGR01685         1 LPRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEW-AYEI   79 (174)
T ss_pred             CCcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHH-HHHH
Confidence            368999999999999866521                 33444579999999999999999999999988 7666 6889


Q ss_pred             HHHcCCC---------CCCceEEEecccCCCCCCHHHHHHHHHHh--CCCCcCceeEeeehhhhHHHh
Q 031610           83 LHKLGIH---------SMFVPMVVIYMYTKDSSNASSSESTCAIF--HFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        83 l~~l~l~---------~~f~~~~~~~~~~~~kp~p~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~  139 (156)
                      ++.+++.         .+|+.++++++....||.+..+..+.+.+  ++.|+++.   |++|....+.
T Consensus        80 L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l---~VgDs~~di~  144 (174)
T TIGR01685        80 LGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQIL---FFDDRTDNVR  144 (174)
T ss_pred             HHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeE---EEcChhHhHH
Confidence            9999998         99999998877666677777777776666  78898875   4455544333

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=99.70  E-value=1e-16  Score=120.95  Aligned_cols=81  Identities=6%  Similarity=-0.029  Sum_probs=72.6

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC-ceEEEecccCCCCCCHHHHHHHHHHhCCC-CcCc
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPMVVIYMYTKDSSNASSSESTCAIFHFH-PKRS  125 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f-~~~~~~~~~~~~kp~p~~~~~~~~~~~~~-~~~~  125 (156)
                      .++||+.++|+.|+++|++++|+||++... +...++.+++..+| +.++++++....||+|+++..+++++++. |+++
T Consensus        99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~-~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~  177 (253)
T TIGR01422        99 SPIPGVIEVIAYLRARGIKIGSTTGYTREM-MDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAAC  177 (253)
T ss_pred             ccCCCHHHHHHHHHHCCCeEEEECCCcHHH-HHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchhe
Confidence            579999999999999999999999999887 79999999999986 78888888888999999999999999995 7776


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      .+|+
T Consensus       178 l~IG  181 (253)
T TIGR01422       178 VKVG  181 (253)
T ss_pred             EEEC
Confidence            5443

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=99.70  E-value=1.4e-16  Score=121.60  Aligned_cols=82  Identities=16%  Similarity=0.225  Sum_probs=74.2

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++....||+|.+++.+++++++.|+++.
T Consensus       100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~-~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l  178 (272)
T PRK13223        100 TVVYPGVRDTLKWLKKQGVEMALITNKPERF-VAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL  178 (272)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEECCcHHH-HHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence            3579999999999999999999999999877 688999999999999988888888899999999999999999998886


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      .|+
T Consensus       179 ~IG  181 (272)
T PRK13223        179 FVG  181 (272)
T ss_pred             EEC
Confidence            544

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=99.70  E-value=9.8e-17  Score=117.39  Aligned_cols=82  Identities=16%  Similarity=0.327  Sum_probs=74.5

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|++|+++|++++|+||+.... +...++.+++..+|+.++++++....||+|..+..+++++++.|+++.
T Consensus        74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l  152 (205)
T TIGR01454        74 VEVFPGVPELLAELRADGVGTAIATGKSGPR-ARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV  152 (205)
T ss_pred             cccCCCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence            4689999999999999999999999999887 799999999999999998888888899999999999999999998875


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      +|+
T Consensus       153 ~ig  155 (205)
T TIGR01454       153 MVG  155 (205)
T ss_pred             EEc
Confidence            443

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=99.69  E-value=4.7e-16  Score=110.70  Aligned_cols=105  Identities=18%  Similarity=0.196  Sum_probs=79.5

Q ss_pred             CceEEEecCCcccccccc--ccccCCCc-ccCCcHHHHHHHHHHCCCeEEEEcCCCCh------------hHHHHHHHHc
Q 031610           22 PRLVVFDLDYTLWPFYCE--CCYEDEIP-YLYPHAKGILEALKEKGIHVAVASRSPAP------------DIAKTFLHKL   86 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~--~~~~~~~~-~l~~~~~~~L~~L~~~G~~v~i~T~~~~~------------~~~~~~l~~l   86 (156)
                      .|+++||+||||+...-.  .....+.+ .++||+.++|++|+++|++++|+||++..            . +...++.+
T Consensus        13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~-i~~~l~~~   91 (166)
T TIGR01664        13 SKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNK-IEAFLEKL   91 (166)
T ss_pred             CcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHH-HHHHHHHc
Confidence            689999999999973110  00011111 26899999999999999999999998753            3 46778999


Q ss_pred             CCCCCCceEEEecccCCCCCCHHHHHHHHHHhC--CCCcCceeEe
Q 031610           87 GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH--FHPKRSCSIF  129 (156)
Q Consensus        87 ~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~--~~~~~~~~v~  129 (156)
                      |+..  ..+++++.....||+|+++..++++++  +.++++++|+
T Consensus        92 gl~~--~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VG  134 (166)
T TIGR01664        92 KVPI--QVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVG  134 (166)
T ss_pred             CCCE--EEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEE
Confidence            9853  445555555668999999999999999  8898887665

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=99.68  E-value=3e-16  Score=107.33  Aligned_cols=101  Identities=22%  Similarity=0.229  Sum_probs=77.6

Q ss_pred             ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC--------ChhHHHHHHHHcCCCCCCce
Q 031610           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP--------APDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~--------~~~~~~~~l~~l~l~~~f~~   94 (156)
                      |+++||+||||++.-... .......++|++.++|+.|+++|++++++||++        ... +...++.+++.  +..
T Consensus         1 k~~~~D~dgtL~~~~~~~-~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~-~~~~l~~~~l~--~~~   76 (132)
T TIGR01662         1 KGVVLDLDGTLTDDVPYV-DDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGR-VARRLEELGVP--IDV   76 (132)
T ss_pred             CEEEEeCCCceecCCCCC-CCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHH-HHHHHHHCCCC--EEE
Confidence            679999999999631111 111123689999999999999999999999998        666 68889999986  333


Q ss_pred             EEEecccCCCCCCHHHHHHHHHHh-CCCCcCceeEe
Q 031610           95 MVVIYMYTKDSSNASSSESTCAIF-HFHPKRSCSIF  129 (156)
Q Consensus        95 ~~~~~~~~~~kp~p~~~~~~~~~~-~~~~~~~~~v~  129 (156)
                      .+...  ...||+|+.++.+++++ +++|+++.+|+
T Consensus        77 ~~~~~--~~~KP~~~~~~~~~~~~~~~~~~~~v~IG  110 (132)
T TIGR01662        77 LYACP--HCRKPKPGMFLEALKRFNEIDPEESVYVG  110 (132)
T ss_pred             EEECC--CCCCCChHHHHHHHHHcCCCChhheEEEc
Confidence            33332  56799999999999999 59999876544

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=99.67  E-value=2.2e-16  Score=113.85  Aligned_cols=92  Identities=15%  Similarity=0.203  Sum_probs=75.5

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++|+ .++|..|+++ ++++|+||++... +...++.+++..+|+.++++++....||+|+++..+++++++.|++++.
T Consensus        88 ~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~-~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~  164 (188)
T PRK10725         88 EPLPL-IEVVKAWHGR-RPMAVGTGSESAI-AEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVV  164 (188)
T ss_pred             CCccH-HHHHHHHHhC-CCEEEEcCCchHH-HHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEE
Confidence            46774 6899999775 8999999999887 7999999999999999999998889999999999999999999887654


Q ss_pred             EeeehhhhHHHhhccccc
Q 031610          128 IFMFQQVMIEMFQNRHSM  145 (156)
Q Consensus       128 v~~~~~~~~~~~~~~~~~  145 (156)
                         ++|....+-.++...
T Consensus       165 ---igDs~~di~aA~~aG  179 (188)
T PRK10725        165 ---FEDADFGIQAARAAG  179 (188)
T ss_pred             ---EeccHhhHHHHHHCC
Confidence               455544444444433

>PLN02940 riboflavin kinase

Probab=99.67  E-value=1.9e-16  Score=126.10  Aligned_cols=82  Identities=20%  Similarity=0.218  Sum_probs=73.9

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHH-HcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH-KLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~-~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ..++||+.++|+.|+++|++++|+||++... +...++ ..++..+|+.++++++....||+|+++..+++++++.|+++
T Consensus        92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~-~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~  170 (382)
T PLN02940         92 IKALPGANRLIKHLKSHGVPMALASNSPRAN-IEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNC  170 (382)
T ss_pred             CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHE
Confidence            3589999999999999999999999999887 677776 68999999999999999999999999999999999999987


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      +.|+
T Consensus       171 l~VG  174 (382)
T PLN02940        171 LVIE  174 (382)
T ss_pred             EEEe
Confidence            6543

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=99.67  E-value=2.8e-16  Score=112.83  Aligned_cols=79  Identities=23%  Similarity=0.340  Sum_probs=71.6

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++|++++++||+  .. ++..++.+++..+|+.++++++.+..||+|+++..+++++++.|+++.
T Consensus        87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~-~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v  163 (185)
T TIGR02009        87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KN-ADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECV  163 (185)
T ss_pred             CCCCcCHHHHHHHHHHcCCeEEEEeCc--hh-HHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeE
Confidence            469999999999999999999999998  45 688999999999999999888888899999999999999999988875


Q ss_pred             eE
Q 031610          127 SI  128 (156)
Q Consensus       127 ~v  128 (156)
                      .|
T Consensus       164 ~I  165 (185)
T TIGR02009       164 VF  165 (185)
T ss_pred             EE
Confidence            43

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=99.67  E-value=5.4e-16  Score=113.19  Aligned_cols=80  Identities=21%  Similarity=0.321  Sum_probs=71.9

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++||+.++|+.|+++|++++|+||... . ....++.+++..+|+.++++++.+..||+|+++..+++.+++.|++++.
T Consensus       105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~-~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~  182 (203)
T TIGR02252       105 QVYPDAIKLLKDLRERGLILGVISNFDS-R-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALH  182 (203)
T ss_pred             eeCcCHHHHHHHHHHCCCEEEEEeCCch-h-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence            4789999999999999999999999875 4 4788899999999999999988899999999999999999999998765


Q ss_pred             Ee
Q 031610          128 IF  129 (156)
Q Consensus       128 v~  129 (156)
                      |+
T Consensus       183 Ig  184 (203)
T TIGR02252       183 IG  184 (203)
T ss_pred             EC
Confidence            44

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=99.67  E-value=9.6e-16  Score=113.30  Aligned_cols=82  Identities=24%  Similarity=0.357  Sum_probs=74.1

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++|++++++||+.... +...++.+++..+|+.++++++....||+|..+..+++++++.++++.
T Consensus        92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i  170 (226)
T PRK13222         92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPF-VAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEML  170 (226)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheE
Confidence            4699999999999999999999999999877 689999999999999988888888899999999999999999988876


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      .|+
T Consensus       171 ~ig  173 (226)
T PRK13222        171 FVG  173 (226)
T ss_pred             EEC
Confidence            443

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=99.66  E-value=8.9e-16  Score=110.52  Aligned_cols=107  Identities=12%  Similarity=-0.033  Sum_probs=80.8

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC---------------hhHHHHHHH
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLH   84 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~---------------~~~~~~~l~   84 (156)
                      .|+|+++||+||||.-.............++||+.++|+.|+++|++++|+||++.               .. ....++
T Consensus         1 ~~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~-~~~~l~   79 (181)
T PRK08942          1 KSMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEK-MDWSLA   79 (181)
T ss_pred             CCccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHH
Confidence            37899999999998765433333333456999999999999999999999999863               11 233455


Q ss_pred             HcCCCCCCceEEEe-----cccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           85 KLGIHSMFVPMVVI-----YMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        85 ~l~l~~~f~~~~~~-----~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      .+++  .|+.++.+     ++.+..||+|.++..+++.+++.++++++|+
T Consensus        80 ~~g~--~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~Vg  127 (181)
T PRK08942         80 DRGG--RLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVG  127 (181)
T ss_pred             HcCC--ccceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEe
Confidence            6665  36665532     3456789999999999999999999887654

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=99.66  E-value=3.4e-16  Score=109.22  Aligned_cols=106  Identities=15%  Similarity=0.006  Sum_probs=76.8

Q ss_pred             ceEEEecCCcccccccc-ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC---------------hhHHHHHHHHc
Q 031610           23 RLVVFDLDYTLWPFYCE-CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKL   86 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~-~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~---------------~~~~~~~l~~l   86 (156)
                      ++++||+||||.++... ........+++||+.++|+.|+++|++++|+||++.               .. +...++.+
T Consensus         1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~-~~~~l~~~   79 (147)
T TIGR01656         1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGR-VLELLRQL   79 (147)
T ss_pred             CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHH-HHHHHHhC
Confidence            47999999999985321 111112236899999999999999999999999874               23 46677888


Q ss_pred             CCCCCCce--EE-EecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           87 GIHSMFVP--MV-VIYMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        87 ~l~~~f~~--~~-~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      ++.....+  .. +++.....||+|++++.+++.++++++++.+|+
T Consensus        80 ~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IG  125 (147)
T TIGR01656        80 GVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVG  125 (147)
T ss_pred             CCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEc
Confidence            87522111  11 134455679999999999999999998876544

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=99.66  E-value=7e-16  Score=117.37  Aligned_cols=80  Identities=8%  Similarity=0.015  Sum_probs=70.5

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC-ceEEEecccCCCCCCHHHHHHHHHHhCCC-CcCc
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPMVVIYMYTKDSSNASSSESTCAIFHFH-PKRS  125 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f-~~~~~~~~~~~~kp~p~~~~~~~~~~~~~-~~~~  125 (156)
                      .++||+.++|+.|+++|++++|+||++... +...++.+++..+| +.++++++....||+|+++..+++++++. ++++
T Consensus       101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~-~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~  179 (267)
T PRK13478        101 TPIPGVLEVIAALRARGIKIGSTTGYTREM-MDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAAC  179 (267)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEcCCcHHH-HHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcce
Confidence            579999999999999999999999999887 68889999888875 77888888888999999999999999996 5666


Q ss_pred             eeE
Q 031610          126 CSI  128 (156)
Q Consensus       126 ~~v  128 (156)
                      .+|
T Consensus       180 l~I  182 (267)
T PRK13478        180 VKV  182 (267)
T ss_pred             EEE
Confidence            544

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=99.66  E-value=4.5e-16  Score=111.76  Aligned_cols=79  Identities=27%  Similarity=0.307  Sum_probs=70.8

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++||+.++|+.|+++|++++|+||+..   ....++.+++..+|+.++++++.+..||+|+.+..+++++++.|+++++
T Consensus        87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~---~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~  163 (185)
T TIGR01990        87 DVLPGIKNLLDDLKKNNIKIALASASKN---APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIG  163 (185)
T ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCcc---HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence            5889999999999999999999998752   4677899999999999998888889999999999999999999888765


Q ss_pred             Ee
Q 031610          128 IF  129 (156)
Q Consensus       128 v~  129 (156)
                      |+
T Consensus       164 vg  165 (185)
T TIGR01990       164 IE  165 (185)
T ss_pred             Ee
Confidence            44

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>PRK09449 dUMP phosphatase; Provisional

Probab=99.66  E-value=6.3e-16  Score=114.41  Aligned_cols=79  Identities=13%  Similarity=0.134  Sum_probs=70.4

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCC-cCce
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHP-KRSC  126 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~-~~~~  126 (156)
                      .++||+.++|+.|+ +|++++|+||+.... +...++.+|+..+|+.++++++.+..||+|+++..+++++++.+ ++++
T Consensus        95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~-~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~  172 (224)
T PRK09449         95 TPLPGAVELLNALR-GKVKMGIITNGFTEL-QQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVL  172 (224)
T ss_pred             ccCccHHHHHHHHH-hCCeEEEEeCCcHHH-HHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEE
Confidence            58999999999999 679999999998777 68889999999999999999999999999999999999999865 5554


Q ss_pred             eE
Q 031610          127 SI  128 (156)
Q Consensus       127 ~v  128 (156)
                      .|
T Consensus       173 ~v  174 (224)
T PRK09449        173 MV  174 (224)
T ss_pred             EE
Confidence            33

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=99.65  E-value=1.6e-15  Score=108.81  Aligned_cols=103  Identities=11%  Similarity=-0.011  Sum_probs=75.7

Q ss_pred             ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC---------------hhHHHHHHHHcC
Q 031610           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKLG   87 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~---------------~~~~~~~l~~l~   87 (156)
                      |++|||+||||.... ......+...++||+.++|+.|+++|++++|+||++.               .. ....+..++
T Consensus         2 ~~~~~D~Dgtl~~~~-~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~   79 (176)
T TIGR00213         2 KAIFLDRDGTINIDH-GYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEW-MDWSLAERD   79 (176)
T ss_pred             CEEEEeCCCCEeCCC-CCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHHHcC
Confidence            689999999999421 1112223456899999999999999999999999984               12 234556666


Q ss_pred             CCCCCceEEEe-----------cccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           88 IHSMFVPMVVI-----------YMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        88 l~~~f~~~~~~-----------~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      +.  |+.++.+           ++....||+|+++..++++++++++++++|+
T Consensus        80 ~~--~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VG  130 (176)
T TIGR00213        80 VD--LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVG  130 (176)
T ss_pred             CC--ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEc
Confidence            54  5554432           2344679999999999999999999987544

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=99.64  E-value=5.6e-16  Score=109.28  Aligned_cols=88  Identities=17%  Similarity=0.255  Sum_probs=78.1

Q ss_pred             CCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcC
Q 031610           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKR  124 (156)
Q Consensus        45 ~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~  124 (156)
                      ...+++|++.++|+.|+++|++++++||.+... +...++.+++..+|+.++++++.+..||+|..+..+++++++.|.+
T Consensus        74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~-~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~  152 (176)
T PF13419_consen   74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRER-IERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEE  152 (176)
T ss_dssp             GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHH-HHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGG
T ss_pred             hccchhhhhhhhhhhcccccceeEEeecCCccc-ccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcce
Confidence            445799999999999999999999999999877 6899999999999999999999999999999999999999999987


Q ss_pred             ceeEeeehhhhH
Q 031610          125 SCSIFMFQQVMI  136 (156)
Q Consensus       125 ~~~v~~~~~~~~  136 (156)
                      +.   +++++..
T Consensus       153 ~~---~vgD~~~  161 (176)
T PF13419_consen  153 IL---FVGDSPS  161 (176)
T ss_dssp             EE---EEESSHH
T ss_pred             EE---EEeCCHH
Confidence            64   4444443

...

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=99.64  E-value=1.5e-15  Score=107.54  Aligned_cols=104  Identities=15%  Similarity=-0.010  Sum_probs=81.7

Q ss_pred             ceEEEecCCcccccccc--ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC---------------ChhHHHHHHHH
Q 031610           23 RLVVFDLDYTLWPFYCE--CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---------------APDIAKTFLHK   85 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~--~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~---------------~~~~~~~~l~~   85 (156)
                      |+++||.||||+...-.  ........+++||+.++|+.|+++|++++|+||++               ... +...++.
T Consensus         2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~-~~~~l~~   80 (161)
T TIGR01261         2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNL-MLQIFRS   80 (161)
T ss_pred             CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHHH
Confidence            68999999999973110  01112234689999999999999999999999974               234 5777889


Q ss_pred             cCCCCCCceEE-E----ecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           86 LGIHSMFVPMV-V----IYMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        86 l~l~~~f~~~~-~----~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      +|+.  |+.++ +    +++....||+|.++..+++.++++++++++|+
T Consensus        81 ~gl~--fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IG  127 (161)
T TIGR01261        81 QGII--FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIG  127 (161)
T ss_pred             CCCc--eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEe
Confidence            9996  76554 3    46777889999999999999999999987665

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=99.64  E-value=1.1e-15  Score=113.02  Aligned_cols=80  Identities=16%  Similarity=0.212  Sum_probs=74.2

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      .+++|++.++|+.++++ ++++++||+.... ....++.+|+..+|+.++++++.+..||+|.+|..+++++|+.|+++.
T Consensus        98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~-~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l  175 (229)
T COG1011          98 LPDYPEALEALKELGKK-YKLGILTNGARPH-QERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEAL  175 (229)
T ss_pred             CccChhHHHHHHHHHhh-ccEEEEeCCChHH-HHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence            57899999999999999 9999999988777 699999999999999999999999999999999999999999998876


Q ss_pred             eE
Q 031610          127 SI  128 (156)
Q Consensus       127 ~v  128 (156)
                      .|
T Consensus       176 ~V  177 (229)
T COG1011         176 FV  177 (229)
T ss_pred             EE
Confidence            44

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=99.63  E-value=2e-15  Score=111.40  Aligned_cols=80  Identities=16%  Similarity=0.174  Sum_probs=73.1

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHh-CCCCcCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIF-HFHPKRS  125 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~-~~~~~~~  125 (156)
                      .+++||+.++|+.|+++ ++++++||+.... +...++.+++..+|+.++++++.+..||+|.++..+++++ ++.|+++
T Consensus        96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~-~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~  173 (224)
T TIGR02254        96 HQLLPGAFELMENLQQK-FRLYIVTNGVRET-QYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEV  173 (224)
T ss_pred             CeeCccHHHHHHHHHhc-CcEEEEeCCchHH-HHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchhe
Confidence            36899999999999999 9999999999887 6889999999999999999988899999999999999999 9999886


Q ss_pred             eeE
Q 031610          126 CSI  128 (156)
Q Consensus       126 ~~v  128 (156)
                      ..|
T Consensus       174 v~i  176 (224)
T TIGR02254       174 LMI  176 (224)
T ss_pred             EEE
Confidence            543

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>PRK06769 hypothetical protein; Validated

Probab=99.63  E-value=1.6e-15  Score=108.67  Aligned_cols=106  Identities=15%  Similarity=0.082  Sum_probs=78.6

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCCh--------hHHHHHHHHcCCCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP--------DIAKTFLHKLGIHSMF   92 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~--------~~~~~~l~~l~l~~~f   92 (156)
                      .+++|++|.||||-. +..... .....++||+.++|++|+++|++++|+||++..        . ....++.++++.+|
T Consensus         3 ~~~~~~~d~d~~~~~-~~~~~~-~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~-~~~~l~~~g~~~~~   79 (173)
T PRK06769          3 NIQAIFIDRDGTIGG-DTTIHY-PGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIAD-FVQELKGFGFDDIY   79 (173)
T ss_pred             CCcEEEEeCCCcccC-CCCCCC-HHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHH-HHHHHHhCCcCEEE
Confidence            579999999999953 222111 123468999999999999999999999998731        1 23346667766555


Q ss_pred             ceEE-EecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           93 VPMV-VIYMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        93 ~~~~-~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      .... ++++....||+|+++..+++++++.|+++++|+
T Consensus        80 ~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IG  117 (173)
T PRK06769         80 LCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIG  117 (173)
T ss_pred             ECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEc
Confidence            4333 344567789999999999999999999986554

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=99.61  E-value=4.9e-15  Score=107.89  Aligned_cols=75  Identities=19%  Similarity=0.231  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      ..++|+.|+++|++++|+||++... +...++.+|+..+|+.++++++... ||+|..+..+++.+++.+++++.|+
T Consensus       111 ~~~~L~~l~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~vG  185 (197)
T TIGR01548       111 PKGLLRELHRAPKGMAVVTGRPRKD-AAKFLTTHGLEILFPVQIWMEDCPP-KPNPEPLILAAKALGVEACHAAMVG  185 (197)
T ss_pred             HHHHHHHHHHcCCcEEEECCCCHHH-HHHHHHHcCchhhCCEEEeecCCCC-CcCHHHHHHHHHHhCcCcccEEEEe
Confidence            4899999999999999999999888 7999999999999999988888776 9999999999999999998876544

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=99.61  E-value=7.6e-15  Score=104.92  Aligned_cols=87  Identities=15%  Similarity=0.243  Sum_probs=73.0

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++|++++++||.+...  .....++++..+|+.++++++.+..||+|..+..+++++++.|+++.
T Consensus        84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~--~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~  161 (183)
T TIGR01509        84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH--AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECL  161 (183)
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEE
Confidence            4689999999999999999999999999653  44445599999999999888888999999999999999999988765


Q ss_pred             eEeeehhhhHHH
Q 031610          127 SIFMFQQVMIEM  138 (156)
Q Consensus       127 ~v~~~~~~~~~~  138 (156)
                      .   ++|....+
T Consensus       162 ~---vgD~~~di  170 (183)
T TIGR01509       162 F---VDDSPAGI  170 (183)
T ss_pred             E---EcCCHHHH
Confidence            4   44544433

HAD subfamilies caused by an overly broad single model.

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=99.61  E-value=4.8e-15  Score=103.64  Aligned_cols=77  Identities=17%  Similarity=0.183  Sum_probs=67.8

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ...+||+.++|+.|+++|++++++||+.... +...++.+ +..+|..++++++.. .||+|+++..+++++++.| ++.
T Consensus        63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l  138 (154)
T TIGR01549        63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRA-QKLLLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVL  138 (154)
T ss_pred             heeccCHHHHHHHHHHCcCeEEEEeCCchHH-HHHHHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEE
Confidence            3467999999999999999999999999887 68888887 788898888888777 9999999999999999988 654


Q ss_pred             e
Q 031610          127 S  127 (156)
Q Consensus       127 ~  127 (156)
                      .
T Consensus       139 ~  139 (154)
T TIGR01549       139 H  139 (154)
T ss_pred             E
Confidence            3

HAD subfamilies caused by an overly broad single model.

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=99.59  E-value=7e-15  Score=112.35  Aligned_cols=79  Identities=16%  Similarity=0.258  Sum_probs=67.5

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      .+++||+.++|+.|+++|++++|+||+.... +...++.+|+..+|+.+++.++.   +++|..+..+++++++.|+++.
T Consensus       141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~-~~~~L~~~gl~~~F~~vi~~~~~---~~k~~~~~~~l~~~~~~p~~~l  216 (273)
T PRK13225        141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQN-IEAFLQRQGLRSLFSVVQAGTPI---LSKRRALSQLVAREGWQPAAVM  216 (273)
T ss_pred             CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCChhheEEEEecCCC---CCCHHHHHHHHHHhCcChhHEE
Confidence            4689999999999999999999999999888 79999999999999987765443   3467899999999999998865


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      +|+
T Consensus       217 ~IG  219 (273)
T PRK13225        217 YVG  219 (273)
T ss_pred             EEC
Confidence            443

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=99.59  E-value=6e-15  Score=108.31  Aligned_cols=82  Identities=16%  Similarity=0.171  Sum_probs=68.2

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhH-HHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDI-AKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~-~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ..++|++.++|+.|+++|++++|+||...... ....+..+++..+|+.++++++.+..||+|..+..+++++++.|+++
T Consensus        93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~  172 (211)
T TIGR02247        93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEEC  172 (211)
T ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHe
Confidence            45899999999999999999999999865320 12334456788899999988888889999999999999999999987


Q ss_pred             eeE
Q 031610          126 CSI  128 (156)
Q Consensus       126 ~~v  128 (156)
                      ..|
T Consensus       173 l~i  175 (211)
T TIGR02247       173 VFL  175 (211)
T ss_pred             EEE
Confidence            654

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=99.59  E-value=4.2e-15  Score=109.87  Aligned_cols=79  Identities=14%  Similarity=0.152  Sum_probs=69.1

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc-eEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV-PMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~-~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ..++||+.++|+.|   +++++|+||++... +...++.+++..+|+ .++++++.+..||+|+++..+++++++.|+++
T Consensus        87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~-~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~  162 (221)
T PRK10563         87 LEPIAGANALLESI---TVPMCVVSNGPVSK-MQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENC  162 (221)
T ss_pred             CCcCCCHHHHHHHc---CCCEEEEeCCcHHH-HHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence            46899999999998   49999999999877 699999999999996 56677778889999999999999999999887


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      +.|+
T Consensus       163 l~ig  166 (221)
T PRK10563        163 ILVD  166 (221)
T ss_pred             EEEe
Confidence            6544

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=99.58  E-value=8.5e-15  Score=105.43  Aligned_cols=87  Identities=15%  Similarity=0.186  Sum_probs=72.3

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCC----CCCCHHHHHHHHHHhCCCCc
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTK----DSSNASSSESTCAIFHFHPK  123 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~----~kp~p~~~~~~~~~~~~~~~  123 (156)
                      +++||+.++|+.|+   ++++++||++... +...++.+|+..+|+.++++++.+.    .||+|+++..+++++++.|+
T Consensus        84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~-~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~  159 (184)
T TIGR01993        84 KPDPELRNLLLRLP---GRKIIFTNGDRAH-ARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPE  159 (184)
T ss_pred             CCCHHHHHHHHhCC---CCEEEEeCCCHHH-HHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCcc
Confidence            47899999999997   4799999999887 7999999999999999998887776    59999999999999999998


Q ss_pred             CceeEeeehhhhHHHhhc
Q 031610          124 RSCSIFMFQQVMIEMFQN  141 (156)
Q Consensus       124 ~~~~v~~~~~~~~~~~~~  141 (156)
                      ++.   |++|....+-.+
T Consensus       160 ~~l---~vgD~~~di~aA  174 (184)
T TIGR01993       160 RAI---FFDDSARNIAAA  174 (184)
T ss_pred             ceE---EEeCCHHHHHHH
Confidence            875   344444433333

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=99.57  E-value=6.9e-15  Score=107.30  Aligned_cols=93  Identities=13%  Similarity=0.085  Sum_probs=75.3

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH-cCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~-l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      .++||+.++|+.|+++|++++|+||++... ....+.. .++..+|+.++++++.+..||+|+++..+++++++.|+++.
T Consensus        84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~-~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l  162 (199)
T PRK09456         84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLH-TTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAV  162 (199)
T ss_pred             ccCHHHHHHHHHHHhCCCcEEEEcCCchhh-HHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeE
Confidence            478999999999999999999999998665 4555444 47788899999999999999999999999999999999975


Q ss_pred             eEeeehhhhHHHhhcccc
Q 031610          127 SIFMFQQVMIEMFQNRHS  144 (156)
Q Consensus       127 ~v~~~~~~~~~~~~~~~~  144 (156)
                      .   ++|....+-.++..
T Consensus       163 ~---vgD~~~di~aA~~a  177 (199)
T PRK09456        163 F---FDDNADNIEAANAL  177 (199)
T ss_pred             E---eCCCHHHHHHHHHc
Confidence            4   44554444444333

>TIGR01684 viral_ppase viral phosphatase

Probab=99.57  E-value=1.4e-14  Score=110.30  Aligned_cols=84  Identities=24%  Similarity=0.244  Sum_probs=71.6

Q ss_pred             CCCCCceEEEecCCccccccccccccCCCcccC-CcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE
Q 031610           18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~-~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~   96 (156)
                      .-..+++|+|||||||++      ++. ..++. |++.++|+.|+++|++++|+|++.+.. +...++.+|+..+|+.++
T Consensus       122 ~~~~~kvIvFDLDgTLi~------~~~-~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~-v~~~L~~lGLd~YFdvII  193 (301)
T TIGR01684       122 VFEPPHVVVFDLDSTLIT------DEE-PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDH-VVESMRKVKLDRYFDIII  193 (301)
T ss_pred             ccccceEEEEecCCCCcC------CCC-ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHH-HHHHHHHcCCCcccCEEE
Confidence            334578999999999997      322 23355 999999999999999999999999888 799999999999999999


Q ss_pred             EecccCCCCCCHH
Q 031610           97 VIYMYTKDSSNAS  109 (156)
Q Consensus        97 ~~~~~~~~kp~p~  109 (156)
                      ++++....||.|+
T Consensus       194 s~Gdv~~~kp~~e  206 (301)
T TIGR01684       194 SGGHKAEEYSTMS  206 (301)
T ss_pred             ECCccccCCCCcc
Confidence            8888888888775

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=99.56  E-value=2.2e-14  Score=116.89  Aligned_cols=77  Identities=16%  Similarity=0.195  Sum_probs=66.4

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      .+++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++.. .||+|.++..++++++  |++++
T Consensus       329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~-~~~~l~~~~l~~~f~~i~~~d~v~-~~~kP~~~~~al~~l~--~~~~v  404 (459)
T PRK06698        329 GALYPNVKEIFTYIKENNCSIYIASNGLTEY-LRAIVSYYDLDQWVTETFSIEQIN-SLNKSDLVKSILNKYD--IKEAA  404 (459)
T ss_pred             CCcCCCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHHHCCcHhhcceeEecCCCC-CCCCcHHHHHHHHhcC--cceEE
Confidence            4689999999999999999999999999988 799999999999999998887664 4688889999998864  55554


Q ss_pred             e
Q 031610          127 S  127 (156)
Q Consensus       127 ~  127 (156)
                      +
T Consensus       405 ~  405 (459)
T PRK06698        405 V  405 (459)
T ss_pred             E
Confidence            3

>TIGR01686 FkbH FkbH-like domain

Probab=99.55  E-value=3.3e-14  Score=110.90  Aligned_cols=117  Identities=17%  Similarity=0.173  Sum_probs=92.8

Q ss_pred             CCceEEEecCCcccccccccc--ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH----cCCCCCCce
Q 031610           21 LPRLVVFDLDYTLWPFYCECC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK----LGIHSMFVP   94 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~--~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~----l~l~~~f~~   94 (156)
                      .+|+|++|+|+|||.+-+...  ..-....+++++.++|+.|+++|++++|||+++... +...++.    +++..+|+.
T Consensus         2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~-a~~~l~~~~~~~~~~~~f~~   80 (320)
T TIGR01686         2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDD-AKKVFERRKDFILQAEDFDA   80 (320)
T ss_pred             CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHH-HHHHHHhCccccCcHHHeeE
Confidence            469999999999998643311  111223478999999999999999999999999887 7999999    888888988


Q ss_pred             EEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhcccccc
Q 031610           95 MVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHSML  146 (156)
Q Consensus        95 ~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  146 (156)
                      +.+.     .||+|..+..+++++++.+.++   +|++|+..++...+...+
T Consensus        81 ~~~~-----~~pk~~~i~~~~~~l~i~~~~~---vfidD~~~d~~~~~~~lp  124 (320)
T TIGR01686        81 RSIN-----WGPKSESLRKIAKKLNLGTDSF---LFIDDNPAERANVKITLP  124 (320)
T ss_pred             EEEe-----cCchHHHHHHHHHHhCCCcCcE---EEECCCHHHHHHHHHHCC
Confidence            7654     5899999999999999998874   467777766666555443

The C-terminal portion of this domain is unique to this family (by BLAST).

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=99.55  E-value=6.1e-14  Score=99.69  Aligned_cols=110  Identities=35%  Similarity=0.551  Sum_probs=74.4

Q ss_pred             CCceEEEecCCcccccccccc----------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHH
Q 031610           21 LPRLVVFDLDYTLWPFYCECC----------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~----------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~   84 (156)
                      -+|+|+||||+|||+.|+.++                ..++...++|++.++|+.|+++|+++++||....+..++..|+
T Consensus         2 ~PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~   81 (169)
T PF12689_consen    2 LPKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLK   81 (169)
T ss_dssp             S-SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHH
T ss_pred             CCcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHH
Confidence            468999999999999988865                4677788999999999999999999999996554445899999


Q ss_pred             HcCCC----------CCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHH
Q 031610           85 KLGIH----------SMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEM  138 (156)
Q Consensus        85 ~l~l~----------~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  138 (156)
                      .+++.          .+|++..++.     .++..-+..+.+..|++.++   ++||||+....
T Consensus        82 ~l~i~~~~~~~~~~~~~F~~~eI~~-----gsK~~Hf~~i~~~tgI~y~e---MlFFDDe~~N~  137 (169)
T PF12689_consen   82 LLEIDDADGDGVPLIEYFDYLEIYP-----GSKTTHFRRIHRKTGIPYEE---MLFFDDESRNI  137 (169)
T ss_dssp             HTT-C----------CCECEEEESS-----S-HHHHHHHHHHHH---GGG---EEEEES-HHHH
T ss_pred             hcCCCccccccccchhhcchhheec-----CchHHHHHHHHHhcCCChhH---EEEecCchhcc
Confidence            99999          7887765543     35777899999999998887   45677765533

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=99.54  E-value=2e-14  Score=107.77  Aligned_cols=76  Identities=8%  Similarity=-0.016  Sum_probs=66.4

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++ ++++++||++..      ++..|+..+|+.++++++.+..||+|.++..+++++++.|++++
T Consensus       112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~  184 (238)
T PRK10748        112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL  184 (238)
T ss_pred             CCCCccHHHHHHHHHcC-CCEEEEECCCch------HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence            45779999999999875 999999998743      26789999999999988888999999999999999999999876


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      +|+
T Consensus       185 ~VG  187 (238)
T PRK10748        185 HVG  187 (238)
T ss_pred             EEc
Confidence            544

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=99.54  E-value=2.2e-14  Score=100.86  Aligned_cols=105  Identities=16%  Similarity=0.091  Sum_probs=77.4

Q ss_pred             CceEEEecCCccccccccccccCCCcc---cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEe
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPY---LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI   98 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~---l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~   98 (156)
                      +|+||||+||||+++.......++...   +.++  .+|++|+++|++++|+||++... +...++.+|+..+|..    
T Consensus         1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~~G~~i~IvTn~~~~~-~~~~l~~~gi~~~~~~----   73 (154)
T TIGR01670         1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALKSGIEVAIITGRKAKL-VEDRCKTLGITHLYQG----   73 (154)
T ss_pred             CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHHCCCEEEEEECCCCHH-HHHHHHHcCCCEEEec----
Confidence            588999999999985332222221111   2233  38999999999999999999888 7999999998877642    


Q ss_pred             cccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610           99 YMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        99 ~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                           .+|+|+.+..+++.+++.++++.+++ -+.+.+.+.
T Consensus        74 -----~~~k~~~~~~~~~~~~~~~~~~~~vG-Ds~~D~~~~  108 (154)
T TIGR01670        74 -----QSNKLIAFSDILEKLALAPENVAYIG-DDLIDWPVM  108 (154)
T ss_pred             -----ccchHHHHHHHHHHcCCCHHHEEEEC-CCHHHHHHH
Confidence                 37899999999999999998876544 233344444

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.53  E-value=5.2e-14  Score=124.06  Aligned_cols=80  Identities=23%  Similarity=0.247  Sum_probs=73.6

Q ss_pred             cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC-CCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH-SMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~-~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      ++||+.++|+.|+++|++++|+||..... +...++++++. .+|+.++++++....||+|+++..+++++++.|+++++
T Consensus       162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~-~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~  240 (1057)
T PLN02919        162 GFPGALELITQCKNKGLKVAVASSADRIK-VDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVV  240 (1057)
T ss_pred             cCccHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence            68999999999999999999999999888 68999999996 78999999999999999999999999999999998765


Q ss_pred             Ee
Q 031610          128 IF  129 (156)
Q Consensus       128 v~  129 (156)
                      |.
T Consensus       241 Ig  242 (1057)
T PLN02919        241 IE  242 (1057)
T ss_pred             Ec
Confidence            43

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=99.53  E-value=9.7e-14  Score=97.00  Aligned_cols=121  Identities=11%  Similarity=-0.069  Sum_probs=88.7

Q ss_pred             ceEEEecCCccccccccccc----c-------------CCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610           23 RLVVFDLDYTLWPFYCECCY----E-------------DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~----~-------------~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~   85 (156)
                      +.+++||||||+........    .             .....++||+.++|++|+ ++++++|+|+++... ++..++.
T Consensus         3 ~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~-~~~il~~   80 (148)
T smart00577        3 KTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMY-ADPVLDL   80 (148)
T ss_pred             cEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHH-HHHHHHH
Confidence            57999999999986321100    0             112257999999999998 579999999999988 7999999


Q ss_pred             cCCCC-CCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhh---ccccccccccc
Q 031610           86 LGIHS-MFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQ---NRHSMLDLNSS  151 (156)
Q Consensus        86 l~l~~-~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~  151 (156)
                      +++.. +|+.+++.++....||.   +..++++++..|+++..   ++|....+-.   |......+.++
T Consensus        81 l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~~i~---i~Ds~~~~~aa~~ngI~i~~f~~~  144 (148)
T smart00577       81 LDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSNVII---IDDSPDSWPFHPENLIPIKPWFGD  144 (148)
T ss_pred             hCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhcEEE---EECCHHHhhcCccCEEEecCcCCC
Confidence            99865 45788888888888887   88899999999998753   4444333333   33333444443

>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit

Probab=99.53  E-value=5.4e-14  Score=100.28  Aligned_cols=109  Identities=14%  Similarity=0.048  Sum_probs=85.4

Q ss_pred             CCceEEEecCCccccccccccccCCCc-ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEec
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIP-YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIY   99 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~-~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~   99 (156)
                      .+|+++||+||||.|+-..+...++.. ...-.-..+++.|+++|++++|+||++... +...++.+++..+|..     
T Consensus         6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~-~~~~l~~lgi~~~f~~-----   79 (169)
T TIGR02726         6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGA-VRHRAEELKIKRFHEG-----   79 (169)
T ss_pred             cCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHH-HHHHHHHCCCcEEEec-----
Confidence            479999999999999755554555433 333334458999999999999999999888 7999999999877753     


Q ss_pred             ccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhh
Q 031610          100 MYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       100 ~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  140 (156)
                          .||+|..+..+++++++.++++..++ -+.+.+.|+.
T Consensus        80 ----~kpkp~~~~~~~~~l~~~~~ev~~iG-D~~nDi~~~~  115 (169)
T TIGR02726        80 ----IKKKTEPYAQMLEEMNISDAEVCYVG-DDLVDLSMMK  115 (169)
T ss_pred             ----CCCCHHHHHHHHHHcCcCHHHEEEEC-CCHHHHHHHH
Confidence                27999999999999999999876555 3345555553

Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=99.52  E-value=7.5e-14  Score=101.33  Aligned_cols=81  Identities=19%  Similarity=0.088  Sum_probs=63.7

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCC----------CHHHHHHHHHH
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSS----------NASSSESTCAI  117 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp----------~p~~~~~~~~~  117 (156)
                      +++||+.++|+.|+++|++++|+||+.... +...++.+|+..+|...+..++.+..+|          ++..+..++++
T Consensus        80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~-~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~  158 (201)
T TIGR01491        80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCL-AKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRE  158 (201)
T ss_pred             CCCccHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHH
Confidence            589999999999999999999999999887 7999999999887766555443333233          33578888899


Q ss_pred             hCCCCcCceeEe
Q 031610          118 FHFHPKRSCSIF  129 (156)
Q Consensus       118 ~~~~~~~~~~v~  129 (156)
                      +++.++++.+|+
T Consensus       159 ~~~~~~~~i~iG  170 (201)
T TIGR01491       159 LNPSLTETVAVG  170 (201)
T ss_pred             hCCCHHHEEEEc
Confidence            999888765443

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=99.51  E-value=1.3e-13  Score=106.12  Aligned_cols=81  Identities=16%  Similarity=0.112  Sum_probs=66.2

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce--EEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP--MVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~--~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      .++||+.++|+.|+++|++++|+||.+... +...++.+....++..  ++++++....||+|+++..+++++++.|+++
T Consensus       144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~-~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~  222 (286)
T PLN02779        144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKA-VSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRC  222 (286)
T ss_pred             CchhhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHE
Confidence            578999999999999999999999999877 6788877643334432  2366677789999999999999999999887


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      ++|+
T Consensus       223 l~IG  226 (286)
T PLN02779        223 VVVE  226 (286)
T ss_pred             EEEe
Confidence            6554

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=99.50  E-value=2e-13  Score=92.14  Aligned_cols=106  Identities=27%  Similarity=0.338  Sum_probs=82.0

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCC
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTK  103 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~  103 (156)
                      +++||+||||++....... .....++|++.++|+.|+++|++++++||+.... +...++.+++..++..+++.+....
T Consensus         1 ~~vfD~D~tl~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~   78 (139)
T cd01427           1 AVLFDLDGTLLDSEPGIAE-IEELELYPGVKEALKELKEKGIKLALATNKSRRE-VLELLEELGLDDYFDPVITSNGAAI   78 (139)
T ss_pred             CeEEccCCceEccCccccc-cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHH-HHHHHHHcCCchhhhheeccchhhh
Confidence            4799999999984211110 1234789999999999999999999999999888 7999999999878877776554433


Q ss_pred             C----------------CCCHHHHHHHHHHhCCCCcCceeEeeehhh
Q 031610          104 D----------------SSNASSSESTCAIFHFHPKRSCSIFMFQQV  134 (156)
Q Consensus       104 ~----------------kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~  134 (156)
                      .                ||++..+..+.+.++..+.+.   ++++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~igD~  122 (139)
T cd01427          79 YYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEV---LMVGDS  122 (139)
T ss_pred             hcccccccccccccccCCCCHHHHHHHHHHcCCChhhE---EEeCCC
Confidence            3                999999999999998876553   445444

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=99.50  E-value=1e-14  Score=104.00  Aligned_cols=74  Identities=15%  Similarity=0.149  Sum_probs=65.5

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++||+.++|+       +++|+||.+... +...++++++..+|+.++++++.+..||+|+.|..+++++|+.|++++.
T Consensus        90 ~~~~g~~~~L~-------~~~i~Tn~~~~~-~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~  161 (175)
T TIGR01493        90 PPWPDSAAALA-------RVAILSNASHWA-FDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLM  161 (175)
T ss_pred             CCCCchHHHHH-------HHhhhhCCCHHH-HHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEe
Confidence            47888888888       378999999887 6889999999999999888888888999999999999999999998765


Q ss_pred             Ee
Q 031610          128 IF  129 (156)
Q Consensus       128 v~  129 (156)
                      |+
T Consensus       162 vg  163 (175)
T TIGR01493       162 VA  163 (175)
T ss_pred             Ee
Confidence            44

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>COG4996 Predicted phosphatase [General function prediction only]

Probab=99.50  E-value=1.2e-13  Score=92.73  Aligned_cols=110  Identities=20%  Similarity=0.221  Sum_probs=85.2

Q ss_pred             ceEEEecCCcccccccc---------------ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610           23 RLVVFDLDYTLWPFYCE---------------CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~---------------~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~   87 (156)
                      ++|+||.||||||+-.-               .++.+....++|.+++++++++++|+.+..+|.+.... +.+.++.++
T Consensus         1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~k-A~~aLral~   79 (164)
T COG4996           1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDK-AIKALRALD   79 (164)
T ss_pred             CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHH-HHHHHHHhc
Confidence            36899999999996322               13667778899999999999999999999999998776 899999999


Q ss_pred             CCCCCceEEEecccCCCCCCHH---HHHHHHHHhCCCCc---CceeEeeehhhhHHHhh
Q 031610           88 IHSMFVPMVVIYMYTKDSSNAS---SSESTCAIFHFHPK---RSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus        88 l~~~f~~~~~~~~~~~~kp~p~---~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~  140 (156)
                      +..+|+++++       +|.|.   ++.++++.++....   .+..|+|++|..+++.+
T Consensus        80 ~~~yFhy~Vi-------ePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~  131 (164)
T COG4996          80 LLQYFHYIVI-------EPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGN  131 (164)
T ss_pred             hhhhEEEEEe-------cCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHH
Confidence            9999999886       67766   45555555553221   13347788888776654

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=99.50  E-value=2.2e-13  Score=100.42  Aligned_cols=121  Identities=23%  Similarity=0.149  Sum_probs=87.8

Q ss_pred             cCCCCCceEEEecCCcccccccccc---------------------------------------------ccCCCcccCC
Q 031610           17 QFENLPRLVVFDLDYTLWPFYCECC---------------------------------------------YEDEIPYLYP   51 (156)
Q Consensus        17 ~~~~~~k~i~fDlDGTL~~~~~~~~---------------------------------------------~~~~~~~l~~   51 (156)
                      ...+++++++||+||||+++.....                                             ...+..+++|
T Consensus         9 ~~~~~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (219)
T TIGR00338         9 PLLRSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVRENLPLTE   88 (219)
T ss_pred             hhhccCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHHhcCCcCC
Confidence            3466789999999999998532100                                             1112235899


Q ss_pred             cHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEe-------c---ccCCCCCCHHHHHHHHHHhCCC
Q 031610           52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI-------Y---MYTKDSSNASSSESTCAIFHFH  121 (156)
Q Consensus        52 ~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~-------~---~~~~~kp~p~~~~~~~~~~~~~  121 (156)
                      |+.++|+.|+++|++++|+||+.... +...++.+++..+|...+..       .   .....+|+|..+..++++++++
T Consensus        89 g~~~~l~~l~~~g~~~~IvS~~~~~~-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  167 (219)
T TIGR00338        89 GAEELVKTLKEKGYKVAVISGGFDLF-AEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKEGIS  167 (219)
T ss_pred             CHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHcCCC
Confidence            99999999999999999999998777 79999999998887542211       1   1223467899999999999999


Q ss_pred             CcCceeEeeehhhhHHHh
Q 031610          122 PKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus       122 ~~~~~~v~~~~~~~~~~~  139 (156)
                      ++++..|+ -+..++.+.
T Consensus       168 ~~~~i~iG-Ds~~Di~aa  184 (219)
T TIGR00338       168 PENTVAVG-DGANDLSMI  184 (219)
T ss_pred             HHHEEEEE-CCHHHHHHH
Confidence            98876544 223344444

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=99.46  E-value=5.6e-13  Score=101.63  Aligned_cols=73  Identities=25%  Similarity=0.298  Sum_probs=61.7

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccC-CcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV   97 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~-~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~   97 (156)
                      ...+++|+|||||||++      ++. ..++. |++.++|+.|+++|++++|+||++... +...++.+|+..+|+.+++
T Consensus       125 ~~~~~~i~~D~D~TL~~------~~~-~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~-v~~~Le~lgL~~yFDvII~  196 (303)
T PHA03398        125 WEIPHVIVFDLDSTLIT------DEE-PVRIRDPFVYDSLDELKERGCVLVLWSYGNREH-VVHSLKETKLEGYFDIIIC  196 (303)
T ss_pred             eeeccEEEEecCCCccC------CCC-ccccCChhHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHHcCCCccccEEEE
Confidence            34678999999999997      333 22344 999999999999999999999998888 7999999999999987776


Q ss_pred             ec
Q 031610           98 IY   99 (156)
Q Consensus        98 ~~   99 (156)
                      ++
T Consensus       197 ~g  198 (303)
T PHA03398        197 GG  198 (303)
T ss_pred             CC
Confidence            54

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.44  E-value=1.1e-12  Score=107.75  Aligned_cols=108  Identities=14%  Similarity=0.167  Sum_probs=82.6

Q ss_pred             CCCCceEEEecCCcccccccc--cccc-CCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC------------hhHHHHHH
Q 031610           19 ENLPRLVVFDLDYTLWPFYCE--CCYE-DEIPYLYPHAKGILEALKEKGIHVAVASRSPA------------PDIAKTFL   83 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~--~~~~-~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~------------~~~~~~~l   83 (156)
                      ....|+++||+||||+.....  ...+ .+...++|++.++|+.|+++|++++|+||++.            .. +..++
T Consensus       165 ~~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~k-i~~iL  243 (526)
T TIGR01663       165 KGQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAK-IEAIV  243 (526)
T ss_pred             CccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHH-HHHHH
Confidence            345699999999999963110  0001 11113689999999999999999999999886            23 57788


Q ss_pred             HHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhC----CCCcCceeEe
Q 031610           84 HKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH----FHPKRSCSIF  129 (156)
Q Consensus        84 ~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~----~~~~~~~~v~  129 (156)
                      +.+|+.  |+.+++.+.....||+|.++..+++.++    ++++++.+|+
T Consensus       244 ~~lgip--fdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VG  291 (526)
T TIGR01663       244 AKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVG  291 (526)
T ss_pred             HHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeC
Confidence            888874  7777777777788999999999999985    7778776655

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=99.43  E-value=1.1e-12  Score=93.67  Aligned_cols=91  Identities=20%  Similarity=0.184  Sum_probs=73.3

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC-ChhHHHHHHHHcCCCCCCceEEEe
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP-APDIAKTFLHKLGIHSMFVPMVVI   98 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~-~~~~~~~~l~~l~l~~~f~~~~~~   98 (156)
                      ..++++++|+||||+..      .  ...++|++.++|+.|+++|++++++||++ ... +..+++.+++..++      
T Consensus        23 ~~v~~vv~D~Dgtl~~~------~--~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~-~~~~~~~~gl~~~~------   87 (170)
T TIGR01668        23 VGIKGVVLDKDNTLVYP------D--HNEAYPALRDWIEELKAAGRKLLIVSNNAGEQR-AKAVEKALGIPVLP------   87 (170)
T ss_pred             CCCCEEEEecCCccccC------C--CCCcChhHHHHHHHHHHcCCEEEEEeCCchHHH-HHHHHHHcCCEEEc------
Confidence            46799999999999962      2  23689999999999999999999999998 454 56666777764321      


Q ss_pred             cccCCCCCCHHHHHHHHHHhCCCCcCceeE
Q 031610           99 YMYTKDSSNASSSESTCAIFHFHPKRSCSI  128 (156)
Q Consensus        99 ~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v  128 (156)
                         ...||+|.++..+++++++.++++.+|
T Consensus        88 ---~~~KP~p~~~~~~l~~~~~~~~~~l~I  114 (170)
T TIGR01668        88 ---HAVKPPGCAFRRAHPEMGLTSEQVAVV  114 (170)
T ss_pred             ---CCCCCChHHHHHHHHHcCCCHHHEEEE
Confidence               236999999999999999998886543

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=99.42  E-value=1.9e-12  Score=96.94  Aligned_cols=111  Identities=12%  Similarity=0.014  Sum_probs=79.5

Q ss_pred             eEEEecCCcccccccc--c-----c------------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCC----C
Q 031610           24 LVVFDLDYTLWPFYCE--C-----C------------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRS----P   74 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~--~-----~------------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~----~   74 (156)
                      +|+|||||||+|....  .     .                  .......+.+++.++|+.++++|++++++||+    .
T Consensus        65 aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~  144 (237)
T TIGR01672        65 AVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKT  144 (237)
T ss_pred             EEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcC
Confidence            8999999999985331  0     0                  00112245566999999999999999999999    4


Q ss_pred             ChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhccccc
Q 031610           75 APDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHSM  145 (156)
Q Consensus        75 ~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  145 (156)
                      ... +..+++.+|+..+|+.++++++....||++..   +++.+++       ++|++|....+..++...
T Consensus       145 ~~~-a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~---~l~~~~i-------~i~vGDs~~DI~aAk~AG  204 (237)
T TIGR01672       145 DTV-SKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQ---WIQDKNI-------RIHYGDSDNDITAAKEAG  204 (237)
T ss_pred             HHH-HHHHHHHhCCchheeEEECCCCCCCCCCCHHH---HHHhCCC-------eEEEeCCHHHHHHHHHCC
Confidence            445 68888899999999888887776667777652   4455554       356777766665555544

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=99.41  E-value=2.6e-12  Score=101.11  Aligned_cols=106  Identities=14%  Similarity=0.046  Sum_probs=80.1

Q ss_pred             CCceEEEecCCcccccccc--ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC---------------ChhHHHHHH
Q 031610           21 LPRLVVFDLDYTLWPFYCE--CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---------------APDIAKTFL   83 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~--~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~---------------~~~~~~~~l   83 (156)
                      +.|+++||.||||+.....  .....+...++||+.++|+.|+++|++++|+||++               ... +...+
T Consensus         1 ~~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~-i~~iL   79 (354)
T PRK05446          1 MQKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNL-MMQIF   79 (354)
T ss_pred             CCcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHH-HHHHH
Confidence            3578999999999974211  11233345799999999999999999999999962               223 46677


Q ss_pred             HHcCCCCCCceEEEe-----cccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           84 HKLGIHSMFVPMVVI-----YMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        84 ~~l~l~~~f~~~~~~-----~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      +.+++.  |+.++++     ++....||+|.++..+++.+++.|+++++|+
T Consensus        80 ~~~gl~--fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIG  128 (354)
T PRK05446         80 ESQGIK--FDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIG  128 (354)
T ss_pred             HHcCCc--eeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEc
Confidence            788873  6555432     4566789999999999999999998876554

>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=99.41  E-value=7.5e-13  Score=98.39  Aligned_cols=87  Identities=13%  Similarity=0.142  Sum_probs=76.5

Q ss_pred             CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ...+.+++.++++.||++|.+++++||-....  +..+..+++..+|++++.++..+..||+|.+|+.+++.+++.|++|
T Consensus       111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~--~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~  188 (237)
T KOG3085|consen  111 AWKYLDGMQELLQKLRKKGTILGIISNFDDRL--RLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEEC  188 (237)
T ss_pred             CceeccHHHHHHHHHHhCCeEEEEecCCcHHH--HHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHe
Confidence            45677888999999999999999999999764  7888999999999999999999999999999999999999999998


Q ss_pred             eeEeeehhhhHH
Q 031610          126 CSIFMFQQVMIE  137 (156)
Q Consensus       126 ~~v~~~~~~~~~  137 (156)
                      ..   .+|....
T Consensus       189 vh---IgD~l~n  197 (237)
T KOG3085|consen  189 VH---IGDLLEN  197 (237)
T ss_pred             EE---ecCcccc
Confidence            65   4455443

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=99.40  E-value=9.7e-13  Score=100.24  Aligned_cols=63  Identities=24%  Similarity=0.366  Sum_probs=55.7

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      |+|++++||||||++      +++   .+.+.++++|++|+++|+++++||||+... +...++.+++..++.
T Consensus         1 m~kli~~DlDGTLl~------~~~---~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~I   63 (272)
T PRK15126          1 MARLAAFDMDGTLLM------PDH---HLGEKTLSTLARLRERDITLTFATGRHVLE-MQHILGALSLDAYLI   63 (272)
T ss_pred             CccEEEEeCCCcCcC------CCC---cCCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCCCcEE
Confidence            579999999999998      444   588999999999999999999999999988 799999999876643

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.40  E-value=4.4e-12  Score=97.87  Aligned_cols=119  Identities=14%  Similarity=0.005  Sum_probs=89.2

Q ss_pred             CCCceEEEecCCcccccccc---ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC-CCceE
Q 031610           20 NLPRLVVFDLDYTLWPFYCE---CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVPM   95 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~---~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~-~f~~~   95 (156)
                      ...+++++|+||||.+....   .+.......++|++.++|+.|+++|++++++||++... ....++.+++.+ +|+.+
T Consensus       156 ~~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~-~~~~l~~l~~~~~~f~~i  234 (300)
T PHA02530        156 GLPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVC-EEDTVEWLRQTDIWFDDL  234 (300)
T ss_pred             CCCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhh-HHHHHHHHHHcCCchhhh
Confidence            34688999999999973110   00011123689999999999999999999999999888 799999999997 88888


Q ss_pred             EEec-------ccCCCCCCHHHHHHHHHHhCCC-CcCceeEeeehhhhHHHhhcc
Q 031610           96 VVIY-------MYTKDSSNASSSESTCAIFHFH-PKRSCSIFMFQQVMIEMFQNR  142 (156)
Q Consensus        96 ~~~~-------~~~~~kp~p~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~  142 (156)
                      ++.+       +....||+|.++..++++++.. ++++.   |++|....+...+
T Consensus       235 ~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~---~vgD~~~d~~~a~  286 (300)
T PHA02530        235 IGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLL---AVDDRDQVVDMWR  286 (300)
T ss_pred             hCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEE---EEcCcHHHHHHHH
Confidence            7766       3556799999999999998773 45553   4555544444333

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=99.40  E-value=1.2e-12  Score=94.46  Aligned_cols=110  Identities=15%  Similarity=0.095  Sum_probs=78.2

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccC-CcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV   97 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~-~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~   97 (156)
                      .+.+|+|++|+||||++........+.....+ ..-..+++.|+++|++++|+||++... +..+++.+++..+|..   
T Consensus        18 ~~~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~~-v~~~l~~lgl~~~f~g---   93 (183)
T PRK09484         18 AENIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSKL-VEDRMTTLGITHLYQG---   93 (183)
T ss_pred             hhCceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcHH-HHHHHHHcCCceeecC---
Confidence            44689999999999998522111222111111 111258899999999999999999887 7999999998877641   


Q ss_pred             ecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610           98 IYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        98 ~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                            .++++..+..+++++++.++++.+|+ -+.+++.+.
T Consensus        94 ------~~~k~~~l~~~~~~~gl~~~ev~~VG-Ds~~D~~~a  128 (183)
T PRK09484         94 ------QSNKLIAFSDLLEKLAIAPEQVAYIG-DDLIDWPVM  128 (183)
T ss_pred             ------CCcHHHHHHHHHHHhCCCHHHEEEEC-CCHHHHHHH
Confidence                  35678999999999999999876544 233344444

>PHA02597 30

Probab=99.38  E-value=3.1e-12  Score=92.99  Aligned_cols=88  Identities=9%  Similarity=0.126  Sum_probs=62.6

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC----CceEEEecccCCCCCCHHHHHHHHHHhCCCC
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM----FVPMVVIYMYTKDSSNASSSESTCAIFHFHP  122 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~----f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~  122 (156)
                      ..++||+.++|+.|+++ ++++++||.+... ....++.+++..+    |+.++++++   .||+|+++..++++++  |
T Consensus        73 ~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~-~~~~~~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~a~~~~~--~  145 (197)
T PHA02597         73 LSAYDDALDVINKLKED-YDFVAVTALGDSI-DALLNRQFNLNALFPGAFSEVLMCGH---DESKEKLFIKAKEKYG--D  145 (197)
T ss_pred             ccCCCCHHHHHHHHHhc-CCEEEEeCCccch-hHHHHhhCCHHHhCCCcccEEEEecc---CcccHHHHHHHHHHhC--C
Confidence            45899999999999987 4678888877555 3556677777654    445555544   3678999999999999  5


Q ss_pred             cCceeEeeehhhhHHHhhcccc
Q 031610          123 KRSCSIFMFQQVMIEMFQNRHS  144 (156)
Q Consensus       123 ~~~~~v~~~~~~~~~~~~~~~~  144 (156)
                      ++   ++|++|....+..++..
T Consensus       146 ~~---~v~vgDs~~di~aA~~a  164 (197)
T PHA02597        146 RV---VCFVDDLAHNLDAAHEA  164 (197)
T ss_pred             Cc---EEEeCCCHHHHHHHHHH
Confidence            44   34666776665555444

2 hypothetical protein; Provisional

>PRK10976 putative hydrolase; Provisional

Probab=99.37  E-value=2.5e-12  Score=97.60  Aligned_cols=63  Identities=32%  Similarity=0.393  Sum_probs=55.2

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      |+|+|++||||||++      +++   .+.+.+.++|++|+++|+++++||||+... +...++.++++.++.
T Consensus         1 mikli~~DlDGTLl~------~~~---~is~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~I   63 (266)
T PRK10976          1 MYQVVASDLDGTLLS------PDH---TLSPYAKETLKLLTARGIHFVFATGRHHVD-VGQIRDNLEIKSYMI   63 (266)
T ss_pred             CceEEEEeCCCCCcC------CCC---cCCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHhcCCCCeEE
Confidence            478999999999998      444   578899999999999999999999999988 688999999876543

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=99.37  E-value=2.5e-12  Score=96.60  Aligned_cols=94  Identities=18%  Similarity=0.082  Sum_probs=71.3

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHH--HHHHHcCCCC-CCceE
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAK--TFLHKLGIHS-MFVPM   95 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~--~~l~~l~l~~-~f~~~   95 (156)
                      .+.++.++||+||||++.       .   .++||+.++|++|+++|++++++||+++.. ..  ..++.+|+.. +|+.+
T Consensus         5 ~~~~~~~~~D~dG~l~~~-------~---~~~pga~e~L~~L~~~G~~~~ivTN~~~~~-~~~~~~L~~~gl~~~~~~~I   73 (242)
T TIGR01459         5 INDYDVFLLDLWGVIIDG-------N---HTYPGAVQNLNKIIAQGKPVYFVSNSPRNI-FSLHKTLKSLGINADLPEMI   73 (242)
T ss_pred             hhcCCEEEEecccccccC-------C---ccCccHHHHHHHHHHCCCEEEEEeCCCCCh-HHHHHHHHHCCCCccccceE
Confidence            456889999999999972       2   589999999999999999999999988765 34  6789999987 88888


Q ss_pred             EEecccCCCCCCHHHHHHHHHHhCCCCcCceeE
Q 031610           96 VVIYMYTKDSSNASSSESTCAIFHFHPKRSCSI  128 (156)
Q Consensus        96 ~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v  128 (156)
                      +++.+...     ..+..++++++..+++++.+
T Consensus        74 i~s~~~~~-----~~l~~~~~~~~~~~~~~~~v  101 (242)
T TIGR01459        74 ISSGEIAV-----QMILESKKRFDIRNGIIYLL  101 (242)
T ss_pred             EccHHHHH-----HHHHhhhhhccCCCceEEEe
Confidence            87653221     34555555666666555443

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=99.34  E-value=2.8e-12  Score=97.37  Aligned_cols=63  Identities=21%  Similarity=0.307  Sum_probs=55.0

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~   94 (156)
                      +|+|++||||||++      +.+   .+.|.+.++|++|+++|+++++||||+... +...++.+++..++.+
T Consensus         3 ~kli~~DlDGTLl~------~~~---~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~I~   65 (272)
T PRK10530          3 YRVIALDLDGTLLT------PKK---TILPESLEALARAREAGYKVIIVTGRHHVA-IHPFYQALALDTPAIC   65 (272)
T ss_pred             ccEEEEeCCCceEC------CCC---ccCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHhcCCCCCEEE
Confidence            79999999999998      444   578899999999999999999999999988 6889999998765443

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=99.34  E-value=4.1e-12  Score=96.52  Aligned_cols=59  Identities=24%  Similarity=0.437  Sum_probs=53.0

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      +|+|++||||||++      +++   .+.+.+.++|++|+++|+++++||||+... +...++.+++..
T Consensus         3 ~kli~~DlDGTLl~------~~~---~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~   61 (270)
T PRK10513          3 IKLIAIDMDGTLLL------PDH---TISPAVKQAIAAARAKGVNVVLTTGRPYAG-VHRYLKELHMEQ   61 (270)
T ss_pred             eEEEEEecCCcCcC------CCC---ccCHHHHHHHHHHHHCCCEEEEecCCChHH-HHHHHHHhCCCC
Confidence            79999999999998      443   578999999999999999999999999988 689999999864

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=99.33  E-value=9.5e-12  Score=87.00  Aligned_cols=94  Identities=23%  Similarity=0.299  Sum_probs=79.1

Q ss_pred             CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610           18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV   97 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~   97 (156)
                      ....++.|++|+|+||+.-     ..   ....|.+++.+..++++|+++.|+||....- +....+.+|++.+.-    
T Consensus        24 ~~~Gikgvi~DlDNTLv~w-----d~---~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R-V~~~~~~l~v~fi~~----   90 (175)
T COG2179          24 KAHGIKGVILDLDNTLVPW-----DN---PDATPELRAWLAELKEAGIKVVVVSNNKESR-VARAAEKLGVPFIYR----   90 (175)
T ss_pred             HHcCCcEEEEeccCceecc-----cC---CCCCHHHHHHHHHHHhcCCEEEEEeCCCHHH-HHhhhhhcCCceeec----
Confidence            3457899999999999962     22   2577999999999999999999999998877 688888888764432    


Q ss_pred             ecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           98 IYMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        98 ~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                           ..||.+..+..++++++++++++.+|+
T Consensus        91 -----A~KP~~~~fr~Al~~m~l~~~~vvmVG  117 (175)
T COG2179          91 -----AKKPFGRAFRRALKEMNLPPEEVVMVG  117 (175)
T ss_pred             -----ccCccHHHHHHHHHHcCCChhHEEEEc
Confidence                 269999999999999999999998776

>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]

Probab=99.33  E-value=2.7e-12  Score=88.78  Aligned_cols=100  Identities=17%  Similarity=0.193  Sum_probs=83.5

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHH--HHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKG--ILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~--~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~   96 (156)
                      ..++|.+++|+||||.|+...+.++++..+.|- +++  .|+.|.+.|++++|+|+|..+- ++++.+.||+...|.++ 
T Consensus         5 a~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFn-v~DG~Gik~l~~~Gi~vAIITGr~s~i-ve~Ra~~LGI~~~~qG~-   81 (170)
T COG1778           5 AKNIKLLILDVDGVLTDGKLYYDENGEEIKAFN-VRDGHGIKLLLKSGIKVAIITGRDSPI-VEKRAKDLGIKHLYQGI-   81 (170)
T ss_pred             hhhceEEEEeccceeecCeEEEcCCCceeeeee-ccCcHHHHHHHHcCCeEEEEeCCCCHH-HHHHHHHcCCceeeech-
Confidence            356899999999999998777767777665554 555  7899999999999999999887 79999999998887654 


Q ss_pred             EecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           97 VIYMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        97 ~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                              +.+...+..+++++++.++++..++
T Consensus        82 --------~dK~~a~~~L~~~~~l~~e~~ayiG  106 (170)
T COG1778          82 --------SDKLAAFEELLKKLNLDPEEVAYVG  106 (170)
T ss_pred             --------HhHHHHHHHHHHHhCCCHHHhhhhc
Confidence                    5577899999999999999976543

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=99.32  E-value=3.8e-12  Score=94.45  Aligned_cols=64  Identities=17%  Similarity=0.148  Sum_probs=55.2

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~   94 (156)
                      ++|+|++|+||||++      ++.   .+.|.+.++|++|+++|+++++||||+... +...++.+++..++..
T Consensus         2 ~~kli~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~i~   65 (230)
T PRK01158          2 KIKAIAIDIDGTITD------KDR---RLSLKAVEAIRKAEKLGIPVILATGNVLCF-ARAAAKLIGTSGPVIA   65 (230)
T ss_pred             ceeEEEEecCCCcCC------CCC---ccCHHHHHHHHHHHHCCCEEEEEcCCchHH-HHHHHHHhCCCCcEEE
Confidence            369999999999997      343   477899999999999999999999999988 6888899998766543

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.31  E-value=4.7e-12  Score=96.68  Aligned_cols=64  Identities=38%  Similarity=0.498  Sum_probs=56.0

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~   94 (156)
                      |+|+|++||||||++      ++.   .+++.++++|++|+++|+++++||||+... +...++.+++..++.+
T Consensus         3 ~~kli~~DlDGTLl~------~~~---~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~-~~~~~~~l~l~~~~i~   66 (273)
T PRK00192          3 MKLLVFTDLDGTLLD------HHT---YSYEPAKPALKALKEKGIPVIPCTSKTAAE-VEVLRKELGLEDPFIV   66 (273)
T ss_pred             cceEEEEcCcccCcC------CCC---cCcHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCCCEEE
Confidence            589999999999998      333   466889999999999999999999999888 7999999998876655

>PRK11133 serB phosphoserine phosphatase; Provisional

Probab=99.31  E-value=1.4e-11  Score=96.16  Aligned_cols=92  Identities=15%  Similarity=0.066  Sum_probs=71.6

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce-------EEEec---ccCCCCCCHHHHHHHHH
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP-------MVVIY---MYTKDSSNASSSESTCA  116 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~-------~~~~~---~~~~~kp~p~~~~~~~~  116 (156)
                      .+++||+.++|+.|++.|++++|+|++.... +..+.+.++++..+..       .+++.   +....+|+++.+..+++
T Consensus       180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~-~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~  258 (322)
T PRK11133        180 LPLMPGLTELVLKLQALGWKVAIASGGFTYF-ADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ  258 (322)
T ss_pred             CCCChhHHHHHHHHHHcCCEEEEEECCcchh-HHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence            4689999999999999999999999999777 6888889998765431       11111   22346899999999999


Q ss_pred             HhCCCCcCceeEeeehhhhHHHhh
Q 031610          117 IFHFHPKRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~  140 (156)
                      ++|++++++.+++ -+.+++.|..
T Consensus       259 ~lgi~~~qtIaVG-Dg~NDl~m~~  281 (322)
T PRK11133        259 EYEIPLAQTVAIG-DGANDLPMIK  281 (322)
T ss_pred             HcCCChhhEEEEE-CCHHHHHHHH
Confidence            9999999987665 4446666663

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=99.29  E-value=6.9e-12  Score=92.44  Aligned_cols=63  Identities=24%  Similarity=0.303  Sum_probs=54.9

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~   94 (156)
                      +|+|++||||||++      +++   .+.|.+.++|++|+++|+++++||||+... +...++.+++..++..
T Consensus         1 ik~v~~DlDGTLl~------~~~---~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~-~~~~~~~l~~~~~~i~   63 (215)
T TIGR01487         1 IKLVAIDIDGTLTE------PNR---MISERAIEAIRKAEKKGIPVSLVTGNTVPF-ARALAVLIGTSGPVVA   63 (215)
T ss_pred             CcEEEEecCCCcCC------CCc---ccCHHHHHHHHHHHHCCCEEEEEcCCcchh-HHHHHHHhCCCCcEEE
Confidence            47899999999997      444   588999999999999999999999999988 6999999998765543

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]

Probab=99.27  E-value=1.6e-11  Score=90.78  Aligned_cols=80  Identities=19%  Similarity=0.224  Sum_probs=67.7

Q ss_pred             CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC-CCCCCceEEE--ecccCCCCCCHHHHHHHHHHhCCCC
Q 031610           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG-IHSMFVPMVV--IYMYTKDSSNASSSESTCAIFHFHP  122 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~-l~~~f~~~~~--~~~~~~~kp~p~~~~~~~~~~~~~~  122 (156)
                      ...+.||+.++++.|+..|++++++|++.+.. ....++.++ +...|...++  ..+..+.||+|++|..+++.++..|
T Consensus        90 ~~~~~PGa~kLv~~L~~~gip~alat~s~~~~-~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~  168 (222)
T KOG2914|consen   90 NSILMPGAEKLVNHLKNNGIPVALATSSTSAS-FELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPP  168 (222)
T ss_pred             ccccCCcHHHHHHHHHhCCCCeeEEecCCccc-HHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCC
Confidence            34688999999999999999999999998877 677777776 7777877776  4578888999999999999999998


Q ss_pred             -cCce
Q 031610          123 -KRSC  126 (156)
Q Consensus       123 -~~~~  126 (156)
                       +.|+
T Consensus       169 ~~k~l  173 (222)
T KOG2914|consen  169 PSKCL  173 (222)
T ss_pred             ccceE
Confidence             5543

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=99.27  E-value=6.9e-11  Score=84.67  Aligned_cols=109  Identities=12%  Similarity=-0.004  Sum_probs=78.0

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--------------HHHHHHHHc
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--------------IAKTFLHKL   86 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--------------~~~~~l~~l   86 (156)
                      ..|++|+|.||||..-.......-+...+.|++++++..|.+.|++++++||.+.-.              .....++..
T Consensus         4 ~~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~   83 (181)
T COG0241           4 DQKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQ   83 (181)
T ss_pred             CCcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHc
Confidence            368999999999975211011222334688999999999999999999999965211              123444555


Q ss_pred             CCCCCCceEEEec-----ccCCCCCCHHHHHHHHHHhCCCCcCceeEeee
Q 031610           87 GIHSMFVPMVVIY-----MYTKDSSNASSSESTCAIFHFHPKRSCSIFMF  131 (156)
Q Consensus        87 ~l~~~f~~~~~~~-----~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~  131 (156)
                      |.  -|+.++...     .+...||+|.++..+++++++++..+.+|+--
T Consensus        84 gv--~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~  131 (181)
T COG0241          84 GV--KIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDR  131 (181)
T ss_pred             CC--ccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCc
Confidence            54  466655321     36779999999999999999999998876643

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=99.27  E-value=1.2e-11  Score=93.82  Aligned_cols=64  Identities=34%  Similarity=0.605  Sum_probs=57.3

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~   94 (156)
                      ++|+|++||||||++      +++   .+.+.+.++|++++++|++++++|||+... +...++.+++..++..
T Consensus         2 ~~kli~~DlDGTLl~------~~~---~i~~~~~~al~~~~~~g~~v~iaTGR~~~~-~~~~~~~l~~~~~~I~   65 (264)
T COG0561           2 MIKLLAFDLDGTLLD------SNK---TISPETKEALARLREKGVKVVLATGRPLPD-VLSILEELGLDGPLIT   65 (264)
T ss_pred             CeeEEEEcCCCCccC------CCC---ccCHHHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCCccEEE
Confidence            579999999999998      454   488999999999999999999999999988 7999999999985544

>PLN02954 phosphoserine phosphatase

Probab=99.26  E-value=4.5e-11  Score=88.40  Aligned_cols=73  Identities=16%  Similarity=0.257  Sum_probs=55.9

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC--CCCceEEE--------ecc----cCCCCCCHHHHH
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH--SMFVPMVV--------IYM----YTKDSSNASSSE  112 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~--~~f~~~~~--------~~~----~~~~kp~p~~~~  112 (156)
                      ..++||+.++|+.|+++|++++|+|++.... +...++.+|+.  .+|...+.        +.+    ....+++|..+.
T Consensus        83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~-i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~  161 (224)
T PLN02954         83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQM-IAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQ  161 (224)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHH
Confidence            3589999999999999999999999999888 79999999987  34532111        111    123467888999


Q ss_pred             HHHHHhCC
Q 031610          113 STCAIFHF  120 (156)
Q Consensus       113 ~~~~~~~~  120 (156)
                      .+++.++.
T Consensus       162 ~~~~~~~~  169 (224)
T PLN02954        162 HIKKKHGY  169 (224)
T ss_pred             HHHHHcCC
Confidence            99888774

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []

Probab=99.26  E-value=3.3e-11  Score=85.22  Aligned_cols=105  Identities=18%  Similarity=0.128  Sum_probs=67.2

Q ss_pred             ceEEEecCCcccccccccc--ccCCCcc-cCCcHHHHHHHHHHCCCeEEEEcCCCCh-------h------HHHHHHHHc
Q 031610           23 RLVVFDLDYTLWPFYCECC--YEDEIPY-LYPHAKGILEALKEKGIHVAVASRSPAP-------D------IAKTFLHKL   86 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~--~~~~~~~-l~~~~~~~L~~L~~~G~~v~i~T~~~~~-------~------~~~~~l~~l   86 (156)
                      |+++||+||||....-...  .+..-.. +.|++.++|+.|.+.|++++|+||...-       .      -+..+++.+
T Consensus         1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l   80 (159)
T PF08645_consen    1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKEL   80 (159)
T ss_dssp             SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHc
Confidence            6799999999987422110  1112223 4568999999999999999999987422       1      124445556


Q ss_pred             CCCCCCceEEEecccCCCCCCHHHHHHHHHHhCC----CCcCceeEe
Q 031610           87 GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHF----HPKRSCSIF  129 (156)
Q Consensus        87 ~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~----~~~~~~~v~  129 (156)
                      ++.  +....+.......||.+.++..+++.++.    +.+++.+|+
T Consensus        81 ~ip--~~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VG  125 (159)
T PF08645_consen   81 GIP--IQVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVG  125 (159)
T ss_dssp             TS---EEEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEE
T ss_pred             CCc--eEEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEe
Confidence            554  33333334457899999999999999875    677777666

; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=99.23  E-value=9.1e-11  Score=87.06  Aligned_cols=93  Identities=19%  Similarity=0.236  Sum_probs=70.7

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc---CCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPK  123 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l---~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~  123 (156)
                      ..++|++.++|+.|+++|++++|+||++... ....++..   ++..+|+..+.. .. ..||+|++|..+++++++.|+
T Consensus        94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~-~~~~~~~~~~~~L~~~f~~~fd~-~~-g~KP~p~~y~~i~~~lgv~p~  170 (220)
T TIGR01691        94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPA-QKLLFGHSDAGNLTPYFSGYFDT-TV-GLKTEAQSYVKIAGQLGSPPR  170 (220)
T ss_pred             cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHhhccccchhhhcceEEEe-Cc-ccCCCHHHHHHHHHHhCcChh
Confidence            3699999999999999999999999999776 46666665   566667665432 22 269999999999999999998


Q ss_pred             CceeEeeehhhhHHHhhccccc
Q 031610          124 RSCSIFMFQQVMIEMFQNRHSM  145 (156)
Q Consensus       124 ~~~~v~~~~~~~~~~~~~~~~~  145 (156)
                      ++.   |++|....+-.++...
T Consensus       171 e~l---fVgDs~~Di~AA~~AG  189 (220)
T TIGR01691       171 EIL---FLSDIINELDAARKAG  189 (220)
T ss_pred             HEE---EEeCCHHHHHHHHHcC
Confidence            864   4556655555444443

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.23  E-value=2.4e-11  Score=92.66  Aligned_cols=60  Identities=28%  Similarity=0.366  Sum_probs=53.0

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~   89 (156)
                      +.+++|++||||||++      +..   .+.+.+.++|++|+++|+++++||||+... +...++.++++
T Consensus         5 ~~~~lI~~DlDGTLL~------~~~---~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~-i~~~~~~l~~~   64 (271)
T PRK03669          5 QDPLLIFTDLDGTLLD------SHT---YDWQPAAPWLTRLREAQVPVILCSSKTAAE-MLPLQQTLGLQ   64 (271)
T ss_pred             CCCeEEEEeCccCCcC------CCC---cCcHHHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHhCCC
Confidence            5679999999999997      433   466789999999999999999999999988 79999999985

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=99.21  E-value=5.6e-11  Score=87.94  Aligned_cols=81  Identities=14%  Similarity=-0.015  Sum_probs=59.6

Q ss_pred             CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC--CC--ceEEEecccCCCCCCHHH----------H
Q 031610           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MF--VPMVVIYMYTKDSSNASS----------S  111 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~--~f--~~~~~~~~~~~~kp~p~~----------~  111 (156)
                      ...++||+.++|+.|+++|++++|+||+.... +..+++.+ +..  .+  ...+..+.....||.|..          .
T Consensus        72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~-i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K  149 (219)
T PRK09552         72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDFF-VYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCK  149 (219)
T ss_pred             CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHH-HHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCch
Confidence            34699999999999999999999999999887 79999987 643  22  122333445556777654          3


Q ss_pred             HHHHHHhCCCCcCceeE
Q 031610          112 ESTCAIFHFHPKRSCSI  128 (156)
Q Consensus       112 ~~~~~~~~~~~~~~~~v  128 (156)
                      ..+++.++..+.++.+|
T Consensus       150 ~~~l~~~~~~~~~~i~i  166 (219)
T PRK09552        150 PSLIRKLSDTNDFHIVI  166 (219)
T ss_pred             HHHHHHhccCCCCEEEE
Confidence            56888888888765433

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.21  E-value=3.4e-11  Score=92.03  Aligned_cols=63  Identities=25%  Similarity=0.304  Sum_probs=54.6

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~   94 (156)
                      .|+||+||||||+++      +.   ..++.+.++|++|+++|+++++||+|+... +..+.+.+++..+|..
T Consensus         1 ~KLIftDLDGTLLd~------~~---~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~e-v~~l~~~Lgl~~p~I~   63 (302)
T PRK12702          1 MRLVLSSLDGSLLDL------EF---NSYGAARQALAALERRSIPLVLYSLRTRAQ-LEHLCRQLRLEHPFIC   63 (302)
T ss_pred             CcEEEEeCCCCCcCC------CC---cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCCCeEEE
Confidence            378999999999983      33   366779999999999999999999999998 6999999999876654

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=99.20  E-value=4e-11  Score=90.54  Aligned_cols=60  Identities=37%  Similarity=0.605  Sum_probs=51.9

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      ++++||||||++      ..+   .+.+.+.++|++|+++|+++++||||+... +...++.+++..++.
T Consensus         1 li~~DlDGTLl~------~~~---~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~-~~~~~~~~~~~~~~I   60 (256)
T TIGR00099         1 LIFIDLDGTLLN------DDH---TISPSTKEALAKLREKGIKVVLATGRPYKE-VKNILKELGLDTPFI   60 (256)
T ss_pred             CEEEeCCCCCCC------CCC---ccCHHHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCCCCEE
Confidence            489999999998      333   577899999999999999999999999888 688999999875543

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=99.13  E-value=2.7e-10  Score=84.10  Aligned_cols=94  Identities=17%  Similarity=0.130  Sum_probs=71.7

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc----------cCCCCCCHHHHHHHHH
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM----------YTKDSSNASSSESTCA  116 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~----------~~~~kp~p~~~~~~~~  116 (156)
                      .+++|++.++++.++++|++++|+|++.... +.++.+.+|++..+......++          .-..+-+...+..+++
T Consensus        76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~l-v~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~  154 (212)
T COG0560          76 LRLTPGAEELVAALKAAGAKVVIISGGFTFL-VEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA  154 (212)
T ss_pred             CcCCccHHHHHHHHHHCCCEEEEEcCChHHH-HHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence            5799999999999999999999999999877 8999999999987765443222          1113446668888999


Q ss_pred             HhCCCCcCceeEeeehhhhHHHhhcc
Q 031610          117 IFHFHPKRSCSIFMFQQVMIEMFQNR  142 (156)
Q Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~~  142 (156)
                      ++|+.++++.+++ -+.++.-|+...
T Consensus       155 ~~g~~~~~~~a~g-Ds~nDlpml~~a  179 (212)
T COG0560         155 ELGIPLEETVAYG-DSANDLPMLEAA  179 (212)
T ss_pred             HcCCCHHHeEEEc-CchhhHHHHHhC
Confidence            9999999887654 344555555443

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=99.13  E-value=1.3e-09  Score=81.68  Aligned_cols=110  Identities=13%  Similarity=0.020  Sum_probs=74.6

Q ss_pred             ceEEEecCCccccc-c---cccc---------------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC---
Q 031610           23 RLVVFDLDYTLWPF-Y---CECC---------------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---   74 (156)
Q Consensus        23 k~i~fDlDGTL~~~-~---~~~~---------------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~---   74 (156)
                      -+|+||+|||+++. .   ....                     .......++||+.++|+.|+++|++++++|||.   
T Consensus        64 ~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k  143 (237)
T PRK11009         64 MAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATK  143 (237)
T ss_pred             cEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            38999999999972 1   1000                     012234588899999999999999999999985   


Q ss_pred             -ChhHHHHHHHHcCC--CCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhccccc
Q 031610           75 -APDIAKTFLHKLGI--HSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHSM  145 (156)
Q Consensus        75 -~~~~~~~~l~~l~l--~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  145 (156)
                       ... +..+++.+|+  ..+|..+++++.  ..||.+..   .++++++       .+|++|....+..++...
T Consensus       144 ~~~t-~~~Llk~~gip~~~~f~vil~gd~--~~K~~K~~---~l~~~~i-------~I~IGDs~~Di~aA~~AG  204 (237)
T PRK11009        144 TETV-SKTLADDFHIPADNMNPVIFAGDK--PGQYTKTQ---WLKKKNI-------RIFYGDSDNDITAAREAG  204 (237)
T ss_pred             cHHH-HHHHHHHcCCCcccceeEEEcCCC--CCCCCHHH---HHHhcCC-------eEEEcCCHHHHHHHHHcC
Confidence             234 5666777999  788877776554  25666653   4444443       456777766655555444

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=99.13  E-value=2.3e-10  Score=83.50  Aligned_cols=80  Identities=16%  Similarity=0.145  Sum_probs=58.3

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEeccc----CCCCCCHHHHHHHHHHhCCCC
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMY----TKDSSNASSSESTCAIFHFHP  122 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~----~~~kp~p~~~~~~~~~~~~~~  122 (156)
                      .+++||+.++|+.|+++ ++++|+||+.... +...++.+++..+|...+...+.    +..++.|.....+++.++..+
T Consensus        67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~  144 (205)
T PRK13582         67 LDPLPGAVEFLDWLRER-FQVVILSDTFYEF-AGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLG  144 (205)
T ss_pred             CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHH-HHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhC
Confidence            45789999999999999 9999999999887 79999999998888654433211    122344555666777777666


Q ss_pred             cCceeE
Q 031610          123 KRSCSI  128 (156)
Q Consensus       123 ~~~~~v  128 (156)
                      .++.+|
T Consensus       145 ~~~v~i  150 (205)
T PRK13582        145 YRVIAA  150 (205)
T ss_pred             CeEEEE
Confidence            655433

>PLN02645 phosphoglycolate phosphatase

Probab=99.12  E-value=4.7e-10  Score=87.33  Aligned_cols=67  Identities=16%  Similarity=0.235  Sum_probs=52.9

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhH--HHHHHHHcCCCCCCceEEE
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVV   97 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~--~~~~l~~l~l~~~f~~~~~   97 (156)
                      .+++++||+|||||+.       +   .++||+.++|++|+++|++++++||++....  ..+.++.+|+...++.++.
T Consensus        27 ~~~~~~~D~DGtl~~~-------~---~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~t   95 (311)
T PLN02645         27 SVETFIFDCDGVIWKG-------D---KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFS   95 (311)
T ss_pred             hCCEEEEeCcCCeEeC-------C---ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEee
Confidence            5899999999999972       2   4789999999999999999999999985441  2344577888766655554

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=99.12  E-value=1.3e-10  Score=85.97  Aligned_cols=59  Identities=17%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             EEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        25 i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      |+|||||||++      +++   .+.+.+.++|++|+++|+++++||||+... +..+++.+++..++.
T Consensus         1 i~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~-~~~~~~~l~~~~~~i   59 (225)
T TIGR01482         1 IASDIDGTLTD------PNR---AINESALEAIRKAESVGIPVVLVTGNSVQF-ARALAKLIGTPDPVI   59 (225)
T ss_pred             CeEeccCccCC------CCc---ccCHHHHHHHHHHHHCCCEEEEEcCCchHH-HHHHHHHhCCCCeEE
Confidence            58999999998      443   477889999999999999999999999988 688889998655543

catalyze the same reaction as SPP.

>PTZ00174 phosphomannomutase; Provisional

Probab=99.11  E-value=1.5e-10  Score=87.24  Aligned_cols=55  Identities=29%  Similarity=0.361  Sum_probs=47.0

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~   85 (156)
                      .+|+|++||||||++      +++   ++.|.++++|++++++|+++++||||+... +...++.
T Consensus         4 ~~klia~DlDGTLL~------~~~---~is~~~~~ai~~l~~~Gi~~viaTGR~~~~-i~~~l~~   58 (247)
T PTZ00174          4 KKTILLFDVDGTLTK------PRN---PITQEMKDTLAKLKSKGFKIGVVGGSDYPK-IKEQLGE   58 (247)
T ss_pred             CCeEEEEECcCCCcC------CCC---CCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHhh
Confidence            369999999999998      444   577889999999999999999999999877 5666653

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=99.11  E-value=5.5e-10  Score=79.47  Aligned_cols=81  Identities=19%  Similarity=0.193  Sum_probs=60.4

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc------------cCCCCCCHHHHHHH
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM------------YTKDSSNASSSEST  114 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~------------~~~~kp~p~~~~~~  114 (156)
                      ..++|++.++++.++++|++++|+|++.... ++..++.+|+..+|...+..++            ......++..+..+
T Consensus        72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~-i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~  150 (177)
T TIGR01488        72 VALRPGARELISWLKERGIDTVIVSGGFDFF-VEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKEL  150 (177)
T ss_pred             CCcCcCHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHH
Confidence            4578999999999999999999999999887 7999999999877654433221            11223345677777


Q ss_pred             HHHhCCCCcCceeE
Q 031610          115 CAIFHFHPKRSCSI  128 (156)
Q Consensus       115 ~~~~~~~~~~~~~v  128 (156)
                      ++..++.++++.++
T Consensus       151 ~~~~~~~~~~~~~i  164 (177)
T TIGR01488       151 LEESKITLKKIIAV  164 (177)
T ss_pred             HHHhCCCHHHEEEE
Confidence            88888877765443

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=99.11  E-value=1.1e-10  Score=86.75  Aligned_cols=59  Identities=32%  Similarity=0.510  Sum_probs=51.8

Q ss_pred             EEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        25 i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      |++||||||++      +++   .+.|.++++|+.|+++|+++++||||+... +..++..+++..++.
T Consensus         1 i~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~g~~~~i~TGR~~~~-~~~~~~~~~~~~~~I   59 (254)
T PF08282_consen    1 IFSDLDGTLLN------SDG---KISPETIEALKELQEKGIKLVIATGRSYSS-IKRLLKELGIDDYFI   59 (254)
T ss_dssp             EEEECCTTTCS------TTS---SSCHHHHHHHHHHHHTTCEEEEECSSTHHH-HHHHHHHTTHCSEEE
T ss_pred             cEEEECCceec------CCC---eeCHHHHHHHHhhcccceEEEEEccCcccc-cccccccccchhhhc
Confidence            68999999998      444   477999999999999999999999999988 799999999875443

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>PLN02887 hydrolase family protein

Probab=99.11  E-value=1.3e-10  Score=96.75  Aligned_cols=63  Identities=16%  Similarity=0.243  Sum_probs=55.2

Q ss_pred             cCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610           17 QFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (156)
Q Consensus        17 ~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~   89 (156)
                      ....++|+|++||||||++      +++   .+.+.++++|++|+++|+++++||||+... +...++.+++.
T Consensus       303 ~~~~~iKLIa~DLDGTLLn------~d~---~Is~~t~eAI~kl~ekGi~~vIATGR~~~~-i~~~l~~L~l~  365 (580)
T PLN02887        303 FYKPKFSYIFCDMDGTLLN------SKS---QISETNAKALKEALSRGVKVVIATGKARPA-VIDILKMVDLA  365 (580)
T ss_pred             hhccCccEEEEeCCCCCCC------CCC---ccCHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHhCcc
Confidence            3556899999999999998      444   588999999999999999999999999888 68889988875

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=99.11  E-value=1.5e-10  Score=85.60  Aligned_cols=61  Identities=28%  Similarity=0.393  Sum_probs=50.3

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC-CCCce
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH-SMFVP   94 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~-~~f~~   94 (156)
                      +|++||||||++      ++.   ...+.++++|+.|+++|+++++||||+... +...++.+++. .++.+
T Consensus         1 ~i~~DlDGTLL~------~~~---~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~-~~~~~~~l~~~~~~~I~   62 (221)
T TIGR02463         1 WVFSDLDGTLLD------SHS---YDWQPAAPWLTRLQEAGIPVILCTSKTAAE-VEYLQKALGLTGDPYIA   62 (221)
T ss_pred             CEEEeCCCCCcC------CCC---CCcHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCCCcEEE
Confidence            489999999998      333   234448999999999999999999999988 79999999987 44443

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=99.10  E-value=3.9e-10  Score=73.92  Aligned_cols=63  Identities=29%  Similarity=0.324  Sum_probs=46.0

Q ss_pred             EEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--HHHHHHHHcCCCCCCceEEE
Q 031610           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHSMFVPMVV   97 (156)
Q Consensus        25 i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--~~~~~l~~l~l~~~f~~~~~   97 (156)
                      ++||+|||||.+       .   .+.||+.++|++|+++|++++++||++...  ...+.++.+|+.---+.+++
T Consensus         1 ~l~D~dGvl~~g-------~---~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~t   65 (101)
T PF13344_consen    1 FLFDLDGVLYNG-------N---EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIIT   65 (101)
T ss_dssp             EEEESTTTSEET-------T---EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEE
T ss_pred             CEEeCccEeEeC-------C---CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEC
Confidence            689999999972       2   689999999999999999999999887433  13555677888754444544

...

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=99.10  E-value=2.5e-09  Score=81.31  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=73.9

Q ss_pred             CCCCCceEEEecCCcccccccc---------------c--cccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhH--
Q 031610           18 FENLPRLVVFDLDYTLWPFYCE---------------C--CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--   78 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~---------------~--~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~--   78 (156)
                      ....+.+|+||+|+|+++....               +  +.......++||+.++|+.|+++|++++++|||.....  
T Consensus        71 ~~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~  150 (266)
T TIGR01533        71 VKDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAA  150 (266)
T ss_pred             cCCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHH
Confidence            3566789999999999874311               0  01123346899999999999999999999999985431  


Q ss_pred             HHHHHHHcCCCCCCc-eEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHH
Q 031610           79 AKTFLHKLGIHSMFV-PMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIE  137 (156)
Q Consensus        79 ~~~~l~~l~l~~~f~-~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  137 (156)
                      ....++.+|+...+. .++.. +..  ++++.....+.+.+++       +++++|+...
T Consensus       151 T~~~Lkk~Gi~~~~~d~lllr-~~~--~~K~~rr~~I~~~y~I-------vl~vGD~~~D  200 (266)
T TIGR01533       151 TLKNLKRFGFPQADEEHLLLK-KDK--SSKESRRQKVQKDYEI-------VLLFGDNLLD  200 (266)
T ss_pred             HHHHHHHcCcCCCCcceEEeC-CCC--CCcHHHHHHHHhcCCE-------EEEECCCHHH
Confidence            246678889876543 34433 222  4566666666654443       5667776443

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>PLN02811 hydrolase

Probab=99.09  E-value=4.2e-10  Score=83.26  Aligned_cols=83  Identities=17%  Similarity=0.164  Sum_probs=68.4

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEec--ccCCCCCCHHHHHHHHHHhC---CC
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIY--MYTKDSSNASSSESTCAIFH---FH  121 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~--~~~~~kp~p~~~~~~~~~~~---~~  121 (156)
                      ..++||+.++|+.|+++|++++|+||...........+..++..+|+.+++++  +....||+|+++..++++++   +.
T Consensus        77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~  156 (220)
T PLN02811         77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD  156 (220)
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence            46899999999999999999999999986542233444457788999999888  77888999999999999997   88


Q ss_pred             CcCceeEe
Q 031610          122 PKRSCSIF  129 (156)
Q Consensus       122 ~~~~~~v~  129 (156)
                      |+++++|+
T Consensus       157 ~~~~v~Ig  164 (220)
T PLN02811        157 PGKVLVFE  164 (220)
T ss_pred             ccceEEEe
Confidence            88876543

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=99.09  E-value=7e-10  Score=79.51  Aligned_cols=51  Identities=22%  Similarity=0.268  Sum_probs=45.7

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEe
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI   98 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~   98 (156)
                      .+++|++.++|+.|+++|++++++||+.... ++..++.+++..+|+.+++.
T Consensus        71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~i~~~  121 (188)
T TIGR01489        71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFF-IDPVLEGIGEKDVFIEIYSN  121 (188)
T ss_pred             CCCCccHHHHHHHHHHcCCcEEEEeCCcHHH-HHHHHHHcCChhheeEEecc
Confidence            3689999999999999999999999999887 68999999999999887753

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=99.09  E-value=2e-10  Score=85.53  Aligned_cols=59  Identities=29%  Similarity=0.453  Sum_probs=50.1

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      +|+|||||||++      ..    ...+++.++|++|+++|+++++||||+... +...++.+++..++.
T Consensus         1 li~~DlDGTLl~------~~----~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~-~~~~~~~lg~~~~~I   59 (225)
T TIGR02461         1 VIFTDLDGTLLP------PG----YEPGPAREALEELKDLGFPIVFVSSKTRAE-QEYYREELGVEPPFI   59 (225)
T ss_pred             CEEEeCCCCCcC------CC----CCchHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCCcEE
Confidence            489999999997      22    245679999999999999999999999888 688999999866543

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=99.03  E-value=8.9e-10  Score=80.16  Aligned_cols=94  Identities=17%  Similarity=0.097  Sum_probs=68.1

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce-EEEecc----------cCCCCCCHHHHHHHHH
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP-MVVIYM----------YTKDSSNASSSESTCA  116 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~-~~~~~~----------~~~~kp~p~~~~~~~~  116 (156)
                      .++|++.++|+.++++|++++|+|++.... ++.+++.+|++.+|.. +...++          ....++++..+..+++
T Consensus        87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~-v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~  165 (202)
T TIGR01490        87 ILYPEARDLIRWHKAEGHTIVLVSASLTIL-VKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA  165 (202)
T ss_pred             hccHHHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence            478999999999999999999999999887 7999999999887754 222111          1223556667888888


Q ss_pred             HhCCCCcCceeEeeehhhhHHHhhccc
Q 031610          117 IFHFHPKRSCSIFMFQQVMIEMFQNRH  143 (156)
Q Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~~~  143 (156)
                      +.++.++++..++ -+..++.|.....
T Consensus       166 ~~~~~~~~~~~~g-Ds~~D~~~~~~a~  191 (202)
T TIGR01490       166 EEQIDLKDSYAYG-DSISDLPLLSLVG  191 (202)
T ss_pred             HcCCCHHHcEeee-CCcccHHHHHhCC
Confidence            8899888876544 3334555554433

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>PTZ00445 p36-lilke protein; Provisional

Probab=99.03  E-value=1.4e-09  Score=79.32  Aligned_cols=121  Identities=16%  Similarity=0.144  Sum_probs=84.0

Q ss_pred             CCCceEEEecCCcccc----cccccc--ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--------------HH
Q 031610           20 NLPRLVVFDLDYTLWP----FYCECC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--------------IA   79 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~----~~~~~~--~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--------------~~   79 (156)
                      ..+|+|++|+|.||+.    +|....  ...-...+.|.....+.+|++.|++++|+|=+....              ++
T Consensus        41 ~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li  120 (219)
T PTZ00445         41 CGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMV  120 (219)
T ss_pred             cCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHH
Confidence            4689999999999997    122110  111112367888889999999999999999555432              46


Q ss_pred             HHHHHHcCCCCCCceEEEec-----------ccCCCCCCHHH--H--HHHHHHhCCCCcCceeEeeehhhhHHHhhccc
Q 031610           80 KTFLHKLGIHSMFVPMVVIY-----------MYTKDSSNASS--S--ESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRH  143 (156)
Q Consensus        80 ~~~l~~l~l~~~f~~~~~~~-----------~~~~~kp~p~~--~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  143 (156)
                      ...++..+-+.-+..++++.           ..+..||.|..  +  +.+++++|+.|+++   +|+||....--.++-
T Consensus       121 ~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~---LFIDD~~~NVeaA~~  196 (219)
T PTZ00445        121 EAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEI---LFIDDDMNNCKNALK  196 (219)
T ss_pred             HHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHe---EeecCCHHHHHHHHH
Confidence            77777665444444444332           23668999999  8  99999999999986   467777665554443

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=99.02  E-value=1.8e-09  Score=78.81  Aligned_cols=85  Identities=16%  Similarity=0.213  Sum_probs=68.7

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccC------CCCCCHHHHHHHHHHhCC
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT------KDSSNASSSESTCAIFHF  120 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~------~~kp~p~~~~~~~~~~~~  120 (156)
                      .++-+-.+++|-.|+.++  -.+.||..... +.+.++.+|+.++|+.+++.+...      .-||.++.++.+++..|+
T Consensus        99 LkPD~~LRnlLL~l~~r~--k~~FTNa~k~H-A~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi  175 (244)
T KOG3109|consen   99 LKPDPVLRNLLLSLKKRR--KWIFTNAYKVH-AIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGI  175 (244)
T ss_pred             cCCCHHHHHHHHhCcccc--EEEecCCcHHH-HHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence            356677888999998875  66789999888 899999999999999998765333      359999999999999999


Q ss_pred             C-CcCceeEeeehhhhHH
Q 031610          121 H-PKRSCSIFMFQQVMIE  137 (156)
Q Consensus       121 ~-~~~~~~v~~~~~~~~~  137 (156)
                      . |..++   |++|+...
T Consensus       176 ~~p~~t~---FfDDS~~N  190 (244)
T KOG3109|consen  176 DSPRNTY---FFDDSERN  190 (244)
T ss_pred             CCcCceE---EEcCchhh
Confidence            8 77763   56665443

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=99.01  E-value=6.9e-10  Score=83.91  Aligned_cols=61  Identities=31%  Similarity=0.428  Sum_probs=50.3

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~   94 (156)
                      +|++||||||++      ..+   ...+.++++|++|+++|+++++||||+... +..+++.+++..++.+
T Consensus         1 li~~DlDGTll~------~~~---~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~-~~~~~~~~~~~~~~I~   61 (256)
T TIGR01486         1 WIFTDLDGTLLD------PHG---YDWGPAKEVLERLQELGIPVIPCTSKTAAE-VEYLRKELGLEDPFIV   61 (256)
T ss_pred             CEEEcCCCCCcC------CCC---cCchHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCCcEEE
Confidence            489999999998      333   133468999999999999999999999988 7999999998655443

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=99.00  E-value=1.2e-09  Score=82.87  Aligned_cols=63  Identities=14%  Similarity=0.214  Sum_probs=49.1

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--HHHHHHHHcCCCC
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHS   90 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--~~~~~l~~l~l~~   90 (156)
                      +|+++||+|||||+.      +.....+.|++.++|++|+++|++++++||++...  .....++.+|++-
T Consensus         1 ~k~i~~D~DGtl~~~------~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~   65 (257)
T TIGR01458         1 VKGVLLDISGVLYIS------DAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDI   65 (257)
T ss_pred             CCEEEEeCCCeEEeC------CCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence            478999999999973      22112388999999999999999999999987653  1466677788763

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>smart00775 LNS2 LNS2 domain

Probab=99.00  E-value=9.3e-09  Score=72.56  Aligned_cols=61  Identities=15%  Similarity=0.182  Sum_probs=44.8

Q ss_pred             eEEEecCCcccccccccc--ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHH---HHHHH
Q 031610           24 LVVFDLDYTLWPFYCECC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAK---TFLHK   85 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~--~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~---~~l~~   85 (156)
                      +|++|+||||++.....+  +.-....+.|++.+++++++++|++++++|+|+... +.   .++..
T Consensus         1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~-~~~t~~~l~~   66 (157)
T smart00775        1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQ-ADRTRSYLSQ   66 (157)
T ss_pred             CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHH-HHHHHHHHHH
Confidence            489999999998421100  000012578999999999999999999999999776 43   66666

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=98.99  E-value=1.3e-09  Score=82.33  Aligned_cols=66  Identities=15%  Similarity=0.217  Sum_probs=52.8

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcC---CCChhHHHHHHHHcCCCCCCceEEEe
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR---SPAPDIAKTFLHKLGIHSMFVPMVVI   98 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~---~~~~~~~~~~l~~l~l~~~f~~~~~~   98 (156)
                      ++.++||+||||++.      .    .+.|++.++|++|+++|++++++||   ++... ....++.+|++...+.++++
T Consensus         1 ~~~~~~D~DGtl~~~------~----~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~-~~~~l~~~g~~~~~~~iit~   69 (249)
T TIGR01457         1 YKGYLIDLDGTMYKG------K----ERIPEAETFVHELQKRDIPYLFVTNNSTRTPES-VAEMLASFDIPATLETVFTA   69 (249)
T ss_pred             CCEEEEeCCCceEcC------C----eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCCChhhEeeH
Confidence            478999999999972      2    3668999999999999999999997   55565 57778889987655555543

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=98.95  E-value=6.7e-09  Score=79.63  Aligned_cols=65  Identities=18%  Similarity=0.302  Sum_probs=49.6

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhH--HHHHHHHcCCCCCCceEE
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMV   96 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~--~~~~l~~l~l~~~f~~~~   96 (156)
                      +++++||+||||++.       .   .++|++.++|++|+++|++++++||++....  ....++.+|+....+.++
T Consensus         2 ~~~~~~D~DGtl~~~-------~---~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~   68 (279)
T TIGR01452         2 AQGFIFDCDGVLWLG-------E---RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLF   68 (279)
T ss_pred             ccEEEEeCCCceEcC-------C---eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEe
Confidence            688999999999972       2   4789999999999999999999999774431  234567788754433343

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=98.95  E-value=3e-09  Score=75.41  Aligned_cols=109  Identities=13%  Similarity=0.054  Sum_probs=77.9

Q ss_pred             ceEEEecCCccccccccccc---------------cCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610           23 RLVVFDLDYTLWPFYCECCY---------------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~---------------~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~   87 (156)
                      +.+++|||+||+........               ..-.....||+.++|+.|++. +.++|.|+++... ++.+++.++
T Consensus         2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~y-A~~il~~ld   79 (162)
T TIGR02251         2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEY-ADPVLDILD   79 (162)
T ss_pred             cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHH-HHHHHHHHC
Confidence            57999999999964322110               011134889999999999887 9999999999998 899999999


Q ss_pred             CCC-CCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610           88 IHS-MFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        88 l~~-~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                      ... +|...++.+.....+|.   +...++.++.+++++   ++.++.-..+.
T Consensus        80 p~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~v---IiVDD~~~~~~  126 (162)
T TIGR02251        80 RGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKV---IIIDNSPYSYS  126 (162)
T ss_pred             cCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhE---EEEeCChhhhc
Confidence            876 78888777666555555   455566677666654   44555544333

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=98.94  E-value=3.7e-09  Score=71.79  Aligned_cols=50  Identities=18%  Similarity=0.112  Sum_probs=40.1

Q ss_pred             ceEEEecCCccccccccccccC--CCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610           23 RLVVFDLDYTLWPFYCECCYED--EIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~~~--~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~   77 (156)
                      |+|++|+||||+..     ..+  ....+.+.+.++|+.|+++|+.++++|||+...
T Consensus         2 K~i~~DiDGTL~~~-----~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~   53 (126)
T TIGR01689         2 KRLVMDLDNTITLT-----ENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRT   53 (126)
T ss_pred             CEEEEeCCCCcccC-----CCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence            68999999999862     111  113477899999999999999999999998654

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>PRK08238 hypothetical protein; Validated

Probab=98.91  E-value=1.5e-08  Score=82.99  Aligned_cols=92  Identities=20%  Similarity=0.091  Sum_probs=69.8

Q ss_pred             ceEEEecCCcccccccccc------------------------------------ccCCCcccCCcHHHHHHHHHHCCCe
Q 031610           23 RLVVFDLDYTLWPFYCECC------------------------------------YEDEIPYLYPHAKGILEALKEKGIH   66 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~------------------------------------~~~~~~~l~~~~~~~L~~L~~~G~~   66 (156)
                      .-+++|+||||+.+..-..                                    -+....++.|++.+.+++++++|++
T Consensus        11 ~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~G~~   90 (479)
T PRK08238         11 LPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAAGRK   90 (479)
T ss_pred             CCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHCCCE
Confidence            3599999999987644321                                    2222335779999999999999999


Q ss_pred             EEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhC
Q 031610           67 VAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH  119 (156)
Q Consensus        67 v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~  119 (156)
                      ++++|+++... ++..++.+|+   |+.++++++....||++... .+.+.++
T Consensus        91 v~LaTas~~~~-a~~i~~~lGl---Fd~Vigsd~~~~~kg~~K~~-~l~~~l~  138 (479)
T PRK08238         91 LVLATASDERL-AQAVAAHLGL---FDGVFASDGTTNLKGAAKAA-ALVEAFG  138 (479)
T ss_pred             EEEEeCCCHHH-HHHHHHHcCC---CCEEEeCCCccccCCchHHH-HHHHHhC
Confidence            99999999887 7999999987   88888888777777765432 3434443

>PRK10444 UMP phosphatase; Provisional

Probab=98.90  E-value=3.4e-09  Score=80.05  Aligned_cols=58  Identities=19%  Similarity=0.262  Sum_probs=46.5

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhH--HHHHHHHcCCC
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIH   89 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~--~~~~l~~l~l~   89 (156)
                      |++++||+|||||++      .    .+.|++.++|++|+++|++++++||++....  ..+.++.+|+.
T Consensus         1 ~~~v~~DlDGtL~~~------~----~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~   60 (248)
T PRK10444          1 IKNVICDIDGVLMHD------N----VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD   60 (248)
T ss_pred             CcEEEEeCCCceEeC------C----eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence            578999999999972      2    5789999999999999999999999987541  23444556764

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=98.90  E-value=9e-09  Score=75.54  Aligned_cols=45  Identities=16%  Similarity=0.206  Sum_probs=40.5

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~   94 (156)
                      +++||+.++|+.+++.| +++|+||+.... +..+++.+|++.+|..
T Consensus        68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~-~~~il~~lgi~~~~an  112 (203)
T TIGR02137        68 KPLEGAVEFVDWLRERF-QVVILSDTFYEF-SQPLMRQLGFPTLLCH  112 (203)
T ss_pred             CCCccHHHHHHHHHhCC-eEEEEeCChHHH-HHHHHHHcCCchhhce
Confidence            58999999999999975 999999999887 7999999999988763

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=98.90  E-value=4.9e-08  Score=74.54  Aligned_cols=136  Identities=18%  Similarity=0.127  Sum_probs=93.6

Q ss_pred             CCcHHHHHHHHHHHhccCCCCCceEEEecCCcccccccc-------cc--------------------------------
Q 031610            1 MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCE-------CC--------------------------------   41 (156)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~-------~~--------------------------------   41 (156)
                      |+|.++|.+-.-.+.....++.. |+.|.|-||..++..       ++                                
T Consensus         2 i~d~~~~~~~~~~~~~~g~~~lq-visDFD~Tlt~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~Y~PiE~d~~   80 (277)
T TIGR01544         2 MADPTRVEEIICGLVKGGAAKLQ-IISDFDYTLSRFSYEDGKRCPTCHGIFDNCKLLTDECRKKLLQLKEKYYPIEVDPV   80 (277)
T ss_pred             CCCHHHHHHHHHHHHhcChhheE-EeeccCccceeeecCCCCCCcchHhHHhhCCCCCHHHHHHHHHHHhhccceecCCC
Confidence            57888888555555556777664 999999999876531       00                                


Q ss_pred             ----------------------------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610           42 ----------------------------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (156)
Q Consensus        42 ----------------------------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~   87 (156)
                                                        -......+.||+.++++.|+++|++++|+|++.... +..+++.++
T Consensus        81 ~~~~eK~~~m~eWw~k~~~l~~~~~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~-Ie~vL~~lg  159 (277)
T TIGR01544        81 LTVEEKYPYMVEWWTKSHGLLVQQAFPKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNV-LEEVLRQAG  159 (277)
T ss_pred             CChHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHHcC
Confidence                                              111235799999999999999999999999999887 799999999


Q ss_pred             CCCCCceEE------EecccCCCCCCH---------HHHHHHHHHhC--CCCcCceeEeeehhhhHHHh
Q 031610           88 IHSMFVPMV------VIYMYTKDSSNA---------SSSESTCAIFH--FHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        88 l~~~f~~~~------~~~~~~~~kp~p---------~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~  139 (156)
                      +...+..++      ..+.....+|.|         ..++.+.+.++  ..+..+..++ -+.+++.|.
T Consensus       160 l~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vG-Ds~~Dl~ma  227 (277)
T TIGR01544       160 VYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLG-DSQGDLRMA  227 (277)
T ss_pred             CCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHHHHHHHhCccCCcceEEEEC-cChhhhhHh
Confidence            876665552      223333346666         56666778887  4555544322 233344443

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=98.89  E-value=3e-09  Score=89.31  Aligned_cols=64  Identities=28%  Similarity=0.409  Sum_probs=53.7

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~   94 (156)
                      ..|+|++||||||++      .++   ...+.+.++|++|+++|+++++||||+... +..+++.+++..++..
T Consensus       415 ~~KLIfsDLDGTLLd------~d~---~i~~~t~eAL~~L~ekGI~~VIATGRs~~~-i~~l~~~Lgl~~~~I~  478 (694)
T PRK14502        415 FKKIVYTDLDGTLLN------PLT---YSYSTALDALRLLKDKELPLVFCSAKTMGE-QDLYRNELGIKDPFIT  478 (694)
T ss_pred             eeeEEEEECcCCCcC------CCC---ccCHHHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCCCCeEEE
Confidence            468999999999998      333   355678999999999999999999999988 6899999998655443

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=98.87  E-value=6.8e-09  Score=76.58  Aligned_cols=79  Identities=10%  Similarity=-0.054  Sum_probs=56.7

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc---eEEEecccCCCCCCHHHH----------HH
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV---PMVVIYMYTKDSSNASSS----------ES  113 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~---~~~~~~~~~~~kp~p~~~----------~~  113 (156)
                      ..++||+.++|+.|+++|++++|+|++.... +..+++.++....+.   ..+..+.....+|.|..+          ..
T Consensus        69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~-i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~  147 (214)
T TIGR03333        69 AEIREGFREFVAFINEHGIPFYVISGGMDFF-VYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS  147 (214)
T ss_pred             CcccccHHHHHHHHHHCCCeEEEECCCcHHH-HHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence            4699999999999999999999999999877 688888875444432   223333445567776654          46


Q ss_pred             HHHHhCCCCcCce
Q 031610          114 TCAIFHFHPKRSC  126 (156)
Q Consensus       114 ~~~~~~~~~~~~~  126 (156)
                      +++.++..+.++.
T Consensus       148 ~l~~~~~~~~~~i  160 (214)
T TIGR03333       148 LIRKLSEPNDYHI  160 (214)
T ss_pred             HHHHHhhcCCcEE
Confidence            6777776665543

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=98.80  E-value=1.2e-08  Score=74.50  Aligned_cols=55  Identities=33%  Similarity=0.462  Sum_probs=46.5

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~   87 (156)
                      ++++|+||||++      +..  .++.+.+.++|++|+++|++++++|||+... +..+++.++
T Consensus         1 li~~D~DgTL~~------~~~--~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~-~~~~~~~~~   55 (204)
T TIGR01484         1 LLFFDLDGTLLD------PNA--HELSPETIEALERLREAGVKVVLVTGRSLAE-IKELLKQLP   55 (204)
T ss_pred             CEEEeCcCCCcC------CCC--CcCCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHhCC
Confidence            489999999997      331  2577999999999999999999999999888 688887743

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=98.74  E-value=1.2e-08  Score=76.78  Aligned_cols=61  Identities=16%  Similarity=0.108  Sum_probs=49.9

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      +|+.||||||+++..   .+   ....|...+++++++++|+++++||||+... ++.+++.+++..+
T Consensus         3 li~tDlDGTLl~~~~---~~---~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~-~~~~~~~~~~~~p   63 (249)
T TIGR01485         3 LLVSDLDNTLVDHTD---GD---NQALLRLNALLEDHRGEDSLLVYSTGRSPHS-YKELQKQKPLLTP   63 (249)
T ss_pred             EEEEcCCCcCcCCCC---CC---hHHHHHHHHHHHHhhccCceEEEEcCCCHHH-HHHHHhcCCCCCC
Confidence            688999999997321   12   3577999999999999999999999999888 6888887876543

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=98.74  E-value=2e-08  Score=76.37  Aligned_cols=71  Identities=21%  Similarity=0.199  Sum_probs=52.6

Q ss_pred             cCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--HHHHHHHH-cCCCCCCc
Q 031610           17 QFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHK-LGIHSMFV   93 (156)
Q Consensus        17 ~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--~~~~~l~~-l~l~~~f~   93 (156)
                      +....++.++||+||||+++       +   .++||+.++|+.|+++|+++.++||++...  +....++. .+++...+
T Consensus         3 ~~~~~y~~~l~DlDGvl~~G-------~---~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~   72 (269)
T COG0647           3 DVMDKYDGFLFDLDGVLYRG-------N---EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPD   72 (269)
T ss_pred             chhhhcCEEEEcCcCceEeC-------C---ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHH
Confidence            34556789999999999973       2   689999999999999999999999987654  12344455 45544444


Q ss_pred             eEEE
Q 031610           94 PMVV   97 (156)
Q Consensus        94 ~~~~   97 (156)
                      .+++
T Consensus        73 ~i~T   76 (269)
T COG0647          73 DIVT   76 (269)
T ss_pred             Heec
Confidence            4443

>PLN02423 phosphomannomutase

Probab=98.73  E-value=2.4e-08  Score=75.28  Aligned_cols=53  Identities=23%  Similarity=0.274  Sum_probs=40.9

Q ss_pred             CCce-EEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHH
Q 031610           21 LPRL-VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (156)
Q Consensus        21 ~~k~-i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~   84 (156)
                      +.++ ++|||||||++      ++.   .+.|.+.++|++|+++ +++++||||+... ....+.
T Consensus         5 ~~~~i~~~D~DGTLl~------~~~---~i~~~~~~ai~~l~~~-i~fviaTGR~~~~-~~~~~~   58 (245)
T PLN02423          5 KPGVIALFDVDGTLTA------PRK---EATPEMLEFMKELRKV-VTVGVVGGSDLSK-ISEQLG   58 (245)
T ss_pred             ccceEEEEeccCCCcC------CCC---cCCHHHHHHHHHHHhC-CEEEEECCcCHHH-HHHHhc
Confidence            3454 45999999998      444   4778999999999987 9999999997655 344443

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=98.70  E-value=6.4e-08  Score=68.77  Aligned_cols=107  Identities=22%  Similarity=0.257  Sum_probs=69.1

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCC--eEEEEcCCC-------ChhHHHHHHHHcCCC
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI--HVAVASRSP-------APDIAKTFLHKLGIH   89 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~--~v~i~T~~~-------~~~~~~~~l~~l~l~   89 (156)
                      ...+|+++||.|+||..      .+.  ..+.|...+.+++|++.+.  +++|+||+.       ... ++.+-+.+|+.
T Consensus        38 ~~Gik~li~DkDNTL~~------~~~--~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~-a~~~~~~lgIp  108 (168)
T PF09419_consen   38 KKGIKALIFDKDNTLTP------PYE--DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGER-AEALEKALGIP  108 (168)
T ss_pred             hcCceEEEEcCCCCCCC------CCc--CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHH-HHHHHHhhCCc
Confidence            45789999999999986      222  2688999999999999876  499999984       444 56666778853


Q ss_pred             CCCceEEEecccCCCCCCHHHHHHHHHHhCCC-----CcCceeEe--eehhhhHHHhhccccccc
Q 031610           90 SMFVPMVVIYMYTKDSSNASSSESTCAIFHFH-----PKRSCSIF--MFQQVMIEMFQNRHSMLD  147 (156)
Q Consensus        90 ~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~-----~~~~~~v~--~~~~~~~~~~~~~~~~~~  147 (156)
                      -+.        ....||  ..+..+.+.++..     |++..+|+  ++||.   ++-||+-+++
T Consensus       109 vl~--------h~~kKP--~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDV---l~gN~~G~~t  160 (168)
T PF09419_consen  109 VLR--------HRAKKP--GCFREILKYFKCQKVVTSPSEIAVIGDRLFTDV---LMGNRMGSYT  160 (168)
T ss_pred             EEE--------eCCCCC--ccHHHHHHHHhhccCCCCchhEEEEcchHHHHH---HHhhccCceE
Confidence            111        012466  5555666666543     55554443  23333   3456665543

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>TIGR01675 plant-AP plant acid phosphatase

Probab=98.69  E-value=2.9e-07  Score=68.52  Aligned_cols=89  Identities=18%  Similarity=0.106  Sum_probs=63.6

Q ss_pred             cHHHHHHHHHHHhcc---CCCCCceEEEecCCcccccccc----------c-------cccCCCcccCCcHHHHHHHHHH
Q 031610            3 DLEKVKNEALEIIGQ---FENLPRLVVFDLDYTLWPFYCE----------C-------CYEDEIPYLYPHAKGILEALKE   62 (156)
Q Consensus         3 ~~~~~~~~~~~~~~~---~~~~~k~i~fDlDGTL~~~~~~----------~-------~~~~~~~~l~~~~~~~L~~L~~   62 (156)
                      |++.|+.+|..-+..   ..+...+++||+|.|+++....          .       +-.....+..|++.++++.|++
T Consensus        55 D~~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~  134 (229)
T TIGR01675        55 DVKRVVDEAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIE  134 (229)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            567777777766653   3456789999999999874211          0       0113344688999999999999


Q ss_pred             CCCeEEEEcCCCChh--HHHHHHHHcCCCCC
Q 031610           63 KGIHVAVASRSPAPD--IAKTFLHKLGIHSM   91 (156)
Q Consensus        63 ~G~~v~i~T~~~~~~--~~~~~l~~l~l~~~   91 (156)
                      +|++++++|||+...  ....-|.+.|+..+
T Consensus       135 ~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~  165 (229)
T TIGR01675       135 LGIKIFLLSGRWEELRNATLDNLINAGFTGW  165 (229)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHHcCCCCc
Confidence            999999999998533  12455667787765

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=98.63  E-value=5.4e-08  Score=74.22  Aligned_cols=60  Identities=17%  Similarity=0.045  Sum_probs=47.5

Q ss_pred             ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHH-CCCeEEEEcCCCChhHHHHHHHHcC
Q 031610           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLG   87 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~-~G~~v~i~T~~~~~~~~~~~l~~l~   87 (156)
                      .+|++|+||||++..    +......+.+.++++|+.|++ .|+.++|+|||+... +..+++.++
T Consensus        15 ~li~~D~DGTLl~~~----~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~-~~~~~~~~~   75 (266)
T PRK10187         15 YAWFFDLDGTLAEIK----PHPDQVVVPDNILQGLQLLATANDGALALISGRSMVE-LDALAKPYR   75 (266)
T ss_pred             EEEEEecCCCCCCCC----CCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHH-HHHhcCccc
Confidence            589999999999721    112223678999999999998 799999999999888 677776654

>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial

Probab=98.60  E-value=4.8e-08  Score=72.96  Aligned_cols=55  Identities=25%  Similarity=0.308  Sum_probs=43.9

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      +|++|+||||++      ++.   .+.+-+ ++++ ++++|++++++|||+... +..+++.+++..
T Consensus         1 li~~DlDgTLl~------~~~---~~~~~~-~~~~-~~~~gi~~viaTGR~~~~-v~~~~~~l~l~~   55 (236)
T TIGR02471         1 LIITDLDNTLLG------DDE---GLASFV-ELLR-GSGDAVGFGIATGRSVES-AKSRYAKLNLPS   55 (236)
T ss_pred             CeEEeccccccC------CHH---HHHHHH-HHHH-hcCCCceEEEEeCCCHHH-HHHHHHhCCCCC
Confidence            478999999998      333   244433 6776 689999999999999998 799999998753

Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins

Probab=98.59  E-value=4e-07  Score=69.07  Aligned_cols=74  Identities=26%  Similarity=0.323  Sum_probs=62.3

Q ss_pred             CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610           18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV   97 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~   97 (156)
                      ....+.+|+||||.||+.      +.+...-..|.+.+.|..|++.|..+++=|.+.+.. +...++++++.++|+.+++
T Consensus       118 ~~~~phVIVfDlD~TLIt------d~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eH-V~~sl~~~~L~~~Fd~ii~  190 (297)
T PF05152_consen  118 VWEPPHVIVFDLDSTLIT------DEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREH-VRHSLKELKLEGYFDIIIC  190 (297)
T ss_pred             cCCCCcEEEEECCCcccc------cCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHH-HHHHHHHhCCccccEEEEe
Confidence            344567899999999997      344333467889999999999999999999998888 7999999999999999876


Q ss_pred             e
Q 031610           98 I   98 (156)
Q Consensus        98 ~   98 (156)
                      .
T Consensus       191 ~  191 (297)
T PF05152_consen  191 G  191 (297)
T ss_pred             C
Confidence            4

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=98.59  E-value=5.9e-07  Score=63.31  Aligned_cols=80  Identities=15%  Similarity=0.059  Sum_probs=59.6

Q ss_pred             CCCceEEEecCCccccccccccc--------------------------cCCCcccCCcHHHHHHHHHHCCCeEEEEcCC
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCY--------------------------EDEIPYLYPHAKGILEALKEKGIHVAVASRS   73 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~--------------------------~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~   73 (156)
                      +....+++|||.||+.+......                          ......++||+.++|+.|++. +.++|+|++
T Consensus         4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~   82 (156)
T TIGR02250         4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMG   82 (156)
T ss_pred             CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCC
Confidence            34567999999999975333110                          011234799999999999855 999999999


Q ss_pred             CChhHHHHHHHHcCCCC-CC-ceEEEeccc
Q 031610           74 PAPDIAKTFLHKLGIHS-MF-VPMVVIYMY  101 (156)
Q Consensus        74 ~~~~~~~~~l~~l~l~~-~f-~~~~~~~~~  101 (156)
                      +... +..+++.++... +| ..+++.++.
T Consensus        83 ~~~y-A~~vl~~ldp~~~~F~~ri~~rd~~  111 (156)
T TIGR02250        83 TRAY-AQAIAKLIDPDGKYFGDRIISRDES  111 (156)
T ss_pred             cHHH-HHHHHHHhCcCCCeeccEEEEeccC
Confidence            9998 899999999885 77 445555543

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>PRK11590 hypothetical protein; Provisional

Probab=98.57  E-value=1.6e-07  Score=69.11  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=35.6

Q ss_pred             ccCCcHHHHH-HHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610           48 YLYPHAKGIL-EALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (156)
Q Consensus        48 ~l~~~~~~~L-~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l   88 (156)
                      .++|++.+.| +.++++|++++|+||++... ++..++.+++
T Consensus        95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~-~~~il~~l~~  135 (211)
T PRK11590         95 TAFPVVQERLTTYLLSSDADVWLITGSPQPL-VEQVYFDTPW  135 (211)
T ss_pred             cCCccHHHHHHHHHHhCCCEEEEEeCCcHHH-HHHHHHHccc
Confidence            4689999999 57888999999999999887 7999999885

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=98.50  E-value=2e-07  Score=65.51  Aligned_cols=77  Identities=21%  Similarity=0.151  Sum_probs=54.5

Q ss_pred             ceEEEecCCcccccccccc----------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC-CCC
Q 031610           23 RLVVFDLDYTLWPFYCECC----------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI-HSM   91 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~----------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l-~~~   91 (156)
                      |++++||||||+.......          ..+-...+.||+.++|+.|.+. +.++|.|++.... +..+++.+.. ..+
T Consensus         1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~y-a~~v~~~ldp~~~~   78 (159)
T PF03031_consen    1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEY-AEPVLDALDPNGKL   78 (159)
T ss_dssp             EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHH-HHHHHHHHTTTTSS
T ss_pred             CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhh-hhHHHHhhhhhccc
Confidence            5799999999997533210          0112345899999999999555 9999999999888 8999999987 457


Q ss_pred             CceEEEeccc
Q 031610           92 FVPMVVIYMY  101 (156)
Q Consensus        92 f~~~~~~~~~  101 (156)
                      |...++.+..
T Consensus        79 ~~~~~~r~~~   88 (159)
T PF03031_consen   79 FSRRLYRDDC   88 (159)
T ss_dssp             EEEEEEGGGS
T ss_pred             cccccccccc
Confidence            7777765543

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=98.49  E-value=3.7e-07  Score=67.00  Aligned_cols=61  Identities=30%  Similarity=0.426  Sum_probs=50.0

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      .+++.+||.|+||||+++      ..   ..-| +.+.+.+|++.|+++++||++...+ ...+.+.+++.+
T Consensus         4 ~~~~~lIFtDlD~TLl~~------~y---e~~p-A~pv~~el~d~G~~Vi~~SSKT~aE-~~~l~~~l~v~~   64 (274)
T COG3769           4 IQMPLLIFTDLDGTLLPH------SY---EWQP-AAPVLLELKDAGVPVILCSSKTRAE-MLYLQKSLGVQG   64 (274)
T ss_pred             cccceEEEEcccCcccCC------CC---CCCc-cchHHHHHHHcCCeEEEeccchHHH-HHHHHHhcCCCC
Confidence            468899999999999983      22   1223 6689999999999999999999988 588888899873

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=98.46  E-value=4.1e-07  Score=68.17  Aligned_cols=62  Identities=26%  Similarity=0.352  Sum_probs=46.2

Q ss_pred             EEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC---ChhHHHHHHHH-cCCCCCCceEEE
Q 031610           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHK-LGIHSMFVPMVV   97 (156)
Q Consensus        25 i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~---~~~~~~~~l~~-l~l~~~f~~~~~   97 (156)
                      ++||+||||+++      .    .++|++.++|+.++++|+++.++||.+   ... ..+.+.. +|+.--.+.++.
T Consensus         1 ~lfD~DGvL~~~------~----~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~-~~~~l~~~~g~~~~~~~iit   66 (236)
T TIGR01460         1 FLFDIDGVLWLG------H----KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEED-YAEKLSSLLGVDVSPDQIIT   66 (236)
T ss_pred             CEEeCcCccCcC------C----ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHH-HHHHHHHhcCCCCCHHHeee
Confidence            589999999983      2    478999999999999999999999655   344 3445555 676544444443

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=98.42  E-value=1.9e-06  Score=62.09  Aligned_cols=83  Identities=14%  Similarity=0.163  Sum_probs=59.0

Q ss_pred             CCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC--CCceE--------E-Eecc---cCCCCCCHH
Q 031610           44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MFVPM--------V-VIYM---YTKDSSNAS  109 (156)
Q Consensus        44 ~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~--~f~~~--------~-~~~~---~~~~kp~p~  109 (156)
                      .+.+++.||+++++.+|+++|..++++||+-... +..+...||++.  .+.-.        + +.+.   ......+++
T Consensus        84 ~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~-i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~  162 (227)
T KOG1615|consen   84 KQKPTLTPGIRELVSRLHARGTQVYLISGGFRQL-IEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAE  162 (227)
T ss_pred             cCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHH-HHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHH
Confidence            4456799999999999999999999999999887 799999999986  32221        1 1111   112344566


Q ss_pred             HHHHHHHHhCCCCcCceeEe
Q 031610          110 SSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~v~  129 (156)
                      .+..+++  +.+.+..++|+
T Consensus       163 ~i~~lrk--~~~~~~~~mvG  180 (227)
T KOG1615|consen  163 VIALLRK--NYNYKTIVMVG  180 (227)
T ss_pred             HHHHHHh--CCChheeEEec
Confidence            7777666  66666666655

>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB

Probab=98.41  E-value=8e-07  Score=65.56  Aligned_cols=40  Identities=15%  Similarity=0.231  Sum_probs=34.9

Q ss_pred             ccCCcHHHHHH-HHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610           48 YLYPHAKGILE-ALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (156)
Q Consensus        48 ~l~~~~~~~L~-~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l   88 (156)
                      .++|++.++|+ .++++|++++|+||++... ++.+.+..++
T Consensus        94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~-~~~ia~~~~~  134 (210)
T TIGR01545        94 TAFPLVAERLRQYLESSDADIWLITGSPQPL-VEAVYFDSNF  134 (210)
T ss_pred             CCCccHHHHHHHHHHhCCCEEEEEcCCcHHH-HHHHHHhccc
Confidence            57999999996 7888999999999999887 7888888655

The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=98.40  E-value=6.5e-07  Score=65.17  Aligned_cols=76  Identities=24%  Similarity=0.290  Sum_probs=62.1

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      +++|++.++|+.|+++|++++++||..... +....+.+|+..   ..+.+...  .||.+.++..+++.++..+.++.+
T Consensus       127 ~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~-a~~~~~~lgi~~---~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~~  200 (215)
T PF00702_consen  127 PLRPGAKEALQELKEAGIKVAILTGDNEST-ASAIAKQLGIFD---SIVFARVI--GKPEPKIFLRIIKELQVKPGEVAM  200 (215)
T ss_dssp             EBHTTHHHHHHHHHHTTEEEEEEESSEHHH-HHHHHHHTTSCS---EEEEESHE--TTTHHHHHHHHHHHHTCTGGGEEE
T ss_pred             cchhhhhhhhhhhhccCcceeeeecccccc-cccccccccccc---cccccccc--ccccchhHHHHHHHHhcCCCEEEE
Confidence            588999999999999999999999999888 799999999944   22222111  589999999999999999996655


Q ss_pred             Ee
Q 031610          128 IF  129 (156)
Q Consensus       128 v~  129 (156)
                      ++
T Consensus       201 vG  202 (215)
T PF00702_consen  201 VG  202 (215)
T ss_dssp             EE
T ss_pred             Ec
Confidence            54

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=98.33  E-value=1e-06  Score=68.94  Aligned_cols=56  Identities=20%  Similarity=0.178  Sum_probs=43.3

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHC----CCeEEEEcCCCC---hhHHHHHHHHcCCC
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK----GIHVAVASRSPA---PDIAKTFLHKLGIH   89 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~----G~~v~i~T~~~~---~~~~~~~l~~l~l~   89 (156)
                      +++||+|||||++      .    .+.|++.++++.|+++    |+++.++||...   ...+..+.+.+|+.
T Consensus         2 ~~ifD~DGvL~~g------~----~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~   64 (321)
T TIGR01456         2 GFAFDIDGVLFRG------K----KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD   64 (321)
T ss_pred             EEEEeCcCceECC------c----cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence            5899999999982      2    4689999999999998    999999998863   33223333677764

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>PLN03017 trehalose-phosphatase

Probab=98.29  E-value=2.1e-06  Score=67.95  Aligned_cols=57  Identities=16%  Similarity=0.232  Sum_probs=43.4

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHH
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF   82 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~   82 (156)
                      ....+||+|+||||++.-    .+.....+.++++++|++|+ +|++++|+|||+... +..+
T Consensus       109 ~k~~llflD~DGTL~Piv----~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~-l~~~  165 (366)
T PLN03017        109 GKQIVMFLDYDGTLSPIV----DDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDK-VYNF  165 (366)
T ss_pred             CCCeEEEEecCCcCcCCc----CCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHH-HHHh
Confidence            344678889999999421    11222358899999999998 789999999999887 5665

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=98.27  E-value=1.5e-05  Score=60.68  Aligned_cols=89  Identities=16%  Similarity=0.103  Sum_probs=59.7

Q ss_pred             cHHHHHHHHHHHhcc-CCCCCceEEEecCCcccccccc------------------ccccCCCcccCCcHHHHHHHHHHC
Q 031610            3 DLEKVKNEALEIIGQ-FENLPRLVVFDLDYTLWPFYCE------------------CCYEDEIPYLYPHAKGILEALKEK   63 (156)
Q Consensus         3 ~~~~~~~~~~~~~~~-~~~~~k~i~fDlDGTL~~~~~~------------------~~~~~~~~~l~~~~~~~L~~L~~~   63 (156)
                      |.+.++.+|..-+.. ..+...+++||+|+|+++....                  .+-.....+..|++.++.+.++++
T Consensus        81 D~~~v~~~a~~y~~~~~~~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~  160 (275)
T TIGR01680        81 DSKTVNQQAYFFARDLEVHEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSL  160 (275)
T ss_pred             HHHHHHHHHHHHHHhCcCCCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHC
Confidence            567777777666543 2234589999999999852110                  011122346789999999999999


Q ss_pred             CCeEEEEcCCCChh--HHHHHHHHcCCCCC
Q 031610           64 GIHVAVASRSPAPD--IAKTFLHKLGIHSM   91 (156)
Q Consensus        64 G~~v~i~T~~~~~~--~~~~~l~~l~l~~~   91 (156)
                      |++++++|||....  ....-|.+.|...+
T Consensus       161 G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~  190 (275)
T TIGR01680       161 GFKIIFLSGRLKDKQAVTEANLKKAGYHTW  190 (275)
T ss_pred             CCEEEEEeCCchhHHHHHHHHHHHcCCCCc
Confidence            99999999998543  12333455666543

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=98.22  E-value=1.2e-06  Score=65.56  Aligned_cols=71  Identities=21%  Similarity=0.273  Sum_probs=51.4

Q ss_pred             CCCceEEEecCCcccccccc------------------ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--HH
Q 031610           20 NLPRLVVFDLDYTLWPFYCE------------------CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IA   79 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~------------------~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--~~   79 (156)
                      +.+.+|+||+|+|+++....                  +...+. .+..|++.++++.++++|..|+++|||+...  ..
T Consensus        70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~-~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T  148 (229)
T PF03767_consen   70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGK-APAIPGALELYNYARSRGVKVFFITGRPESQREAT  148 (229)
T ss_dssp             TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTG-GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHH
T ss_pred             CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhccc-CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHH
Confidence            56789999999999863111                  112222 3788999999999999999999999998653  12


Q ss_pred             HHHHHHcCCCCC
Q 031610           80 KTFLHKLGIHSM   91 (156)
Q Consensus        80 ~~~l~~l~l~~~   91 (156)
                      ..-|.+.|...+
T Consensus       149 ~~nL~~~G~~~~  160 (229)
T PF03767_consen  149 EKNLKKAGFPGW  160 (229)
T ss_dssp             HHHHHHHTTSTB
T ss_pred             HHHHHHcCCCcc
Confidence            344566776544

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]

Probab=98.21  E-value=3.3e-06  Score=56.68  Aligned_cols=80  Identities=35%  Similarity=0.531  Sum_probs=60.4

Q ss_pred             HHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           11 ALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        11 ~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      +++++.+..=-+..+.+|+|+|+++++.+..+.++....|+.++..|..|+++|+.++++|+.....++...|+.+.+..
T Consensus         7 ~~~fdldytiwP~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~   86 (144)
T KOG4549|consen    7 AMQFDLDYTIWPRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQ   86 (144)
T ss_pred             eeEEeccceeeeEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCc
Confidence            34444443334455666666666666666668888888999999999999999999999998887766788888876654

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=98.21  E-value=5.9e-06  Score=60.20  Aligned_cols=80  Identities=18%  Similarity=0.285  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610            6 KVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (156)
Q Consensus         6 ~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~   85 (156)
                      +|..--+.++.......|++++|||+||+++-..  ..+......|++.++|+.+.+ .+.++|-|+..... +...+..
T Consensus         5 ~~~~~~~~~~~~~~~~kklLVLDLDeTLvh~~~~--~~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~y-a~~~l~~   80 (195)
T TIGR02245         5 RIEQYKIKLLNPPREGKKLLVLDIDYTLFDHRSP--AETGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKW-IEIKMTE   80 (195)
T ss_pred             HHHhcCccccCCCCCCCcEEEEeCCCceEccccc--CCCceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHH-HHHHHHH
Confidence            3333345666666777799999999999974211  112234588999999999988 69999999999888 7999998


Q ss_pred             cCCC
Q 031610           86 LGIH   89 (156)
Q Consensus        86 l~l~   89 (156)
                      +++.
T Consensus        81 l~~~   84 (195)
T TIGR02245        81 LGVL   84 (195)
T ss_pred             hccc
Confidence            8764

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional

Probab=98.20  E-value=2.5e-06  Score=73.51  Aligned_cols=62  Identities=24%  Similarity=0.311  Sum_probs=49.0

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHH-CCCeEEEEcCCCChhHHHHHHHHcC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLG   87 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~-~G~~v~i~T~~~~~~~~~~~l~~l~   87 (156)
                      ..++|+||+||||++..    .......+.+.+.++|++|.+ .|+.++|+|||+... +.+.+..++
T Consensus       491 ~~rLi~~D~DGTL~~~~----~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~-l~~~~~~~~  553 (726)
T PRK14501        491 SRRLLLLDYDGTLVPFA----PDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDT-LERWFGDLP  553 (726)
T ss_pred             cceEEEEecCccccCCC----CCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHH-HHHHhCCCC
Confidence            46899999999999731    112223577899999999999 599999999999888 687776654

>COG4229 Predicted enolase-phosphatase [Energy production and conversion]

Probab=98.19  E-value=7.2e-06  Score=58.62  Aligned_cols=92  Identities=15%  Similarity=0.173  Sum_probs=69.3

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH-H---HcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCC
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL-H---KLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHP  122 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l-~---~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~  122 (156)
                      ..+||.+.++|++.++.|+++.|.|+++...  ++++ .   ..++..+|.+.+-.  .--.|-....|..+++..|++|
T Consensus       102 ahlypDav~~ik~wk~~g~~vyiYSSGSV~A--QkL~Fghs~agdL~~lfsGyfDt--tiG~KrE~~SY~kIa~~iGl~p  177 (229)
T COG4229         102 AHLYPDAVQAIKRWKALGMRVYIYSSGSVKA--QKLFFGHSDAGDLNSLFSGYFDT--TIGKKRESQSYAKIAGDIGLPP  177 (229)
T ss_pred             cccCHhHHHHHHHHHHcCCcEEEEcCCCchh--HHHhhcccccccHHhhhcceeec--cccccccchhHHHHHHhcCCCc
Confidence            4699999999999999999999999998764  5544 2   23455566655421  1124667789999999999999


Q ss_pred             cCceeEeeehhhhHHHhhccccc
Q 031610          123 KRSCSIFMFQQVMIEMFQNRHSM  145 (156)
Q Consensus       123 ~~~~~v~~~~~~~~~~~~~~~~~  145 (156)
                      .+   |+|..|+..++-.++.-.
T Consensus       178 ~e---ilFLSDn~~EL~AA~~vG  197 (229)
T COG4229         178 AE---ILFLSDNPEELKAAAGVG  197 (229)
T ss_pred             hh---eEEecCCHHHHHHHHhcc
Confidence            87   678888888887666543

>PLN02151 trehalose-phosphatase

Probab=98.16  E-value=5.2e-06  Score=65.52  Aligned_cols=58  Identities=16%  Similarity=0.249  Sum_probs=44.6

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHH
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~   84 (156)
                      ...++|+|+||||.+.-    .+.....+.|+++++|++|.+ +.+++|+|||+... +..++.
T Consensus        97 ~~~ll~lDyDGTL~PIv----~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~-l~~~~~  154 (354)
T PLN02151         97 KQIVMFLDYDGTLSPIV----DDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREK-VSSFVK  154 (354)
T ss_pred             CceEEEEecCccCCCCC----CCcccccCCHHHHHHHHHHhc-CCCEEEEECCCHHH-HHHHcC
Confidence            44678899999999621    233344688999999999984 57999999999877 566553

>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]

Probab=98.14  E-value=8.2e-06  Score=62.46  Aligned_cols=61  Identities=21%  Similarity=0.357  Sum_probs=47.6

Q ss_pred             CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHH---HHHcCCC
Q 031610           18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF---LHKLGIH   89 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~---l~~l~l~   89 (156)
                      ....+..++||.||+||.+       .   .+.||+.++++.|++.|..+.++||++... .+..   ++.+|+.
T Consensus        18 ~l~~~DtfifDcDGVlW~g-------~---~~ipGs~e~l~~L~~~gK~i~fvTNNStks-r~~y~kK~~~lG~~   81 (306)
T KOG2882|consen   18 LLDSFDTFIFDCDGVLWLG-------E---KPIPGSPEALNLLKSLGKQIIFVTNNSTKS-REQYMKKFAKLGFN   81 (306)
T ss_pred             HHhhcCEEEEcCCcceeec-------C---CCCCChHHHHHHHHHcCCcEEEEeCCCcch-HHHHHHHHHHhCcc
Confidence            3455778999999999962       2   588999999999999999999999987544 2333   4456655

>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]

Probab=98.09  E-value=5.8e-06  Score=72.20  Aligned_cols=59  Identities=20%  Similarity=0.214  Sum_probs=47.4

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHH-HHCCCeEEEEcCCCChhHHHHHHHHc
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL-KEKGIHVAVASRSPAPDIAKTFLHKL   86 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L-~~~G~~v~i~T~~~~~~~~~~~l~~l   86 (156)
                      +.++|++|+||||++.      ......+.|++.++|++| ++.|..++|+|||+... +.+++..+
T Consensus       595 ~~rlI~LDyDGTLlp~------~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~-L~~~f~~~  654 (854)
T PLN02205        595 TTRAILLDYDGTLMPQ------ASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKT-LADWFSPC  654 (854)
T ss_pred             cCeEEEEecCCcccCC------ccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHH-HHHHhCCC
Confidence            5789999999999973      211235778999999997 77899999999999888 58777543

>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.06  E-value=4.8e-05  Score=61.75  Aligned_cols=111  Identities=18%  Similarity=0.196  Sum_probs=74.6

Q ss_pred             CCCCCceEEEecCCcccccccccc-------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC-
Q 031610           18 FENLPRLVVFDLDYTLWPFYCECC-------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH-   89 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~~~-------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~-   89 (156)
                      ..+..|++++|||+|||.+-...+       +......++..--+.+..|+++|..++|||-+.... +...++...-. 
T Consensus       218 ~g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~d-a~evF~khp~Mi  296 (574)
T COG3882         218 SGKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKD-AKEVFRKHPDMI  296 (574)
T ss_pred             hCcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhh-HHHHHhhCCCeE
Confidence            444569999999999998633321       111112345555668899999999999999888777 68877764311 


Q ss_pred             ---CCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHH
Q 031610           90 ---SMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIE  137 (156)
Q Consensus        90 ---~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  137 (156)
                         ..|..     ..-++-|+.+-+..+++++++.-..   .+|.||+-.+
T Consensus       297 Lkeedfa~-----~~iNW~~K~eNirkIAkklNlg~dS---mvFiDD~p~E  339 (574)
T COG3882         297 LKEEDFAV-----FQINWDPKAENIRKIAKKLNLGLDS---MVFIDDNPAE  339 (574)
T ss_pred             eeHhhhhh-----heecCCcchhhHHHHHHHhCCCccc---eEEecCCHHH
Confidence               11222     1224788999999999999987653   4456665433

>PLN02382 probable sucrose-phosphatase

Probab=98.04  E-value=1.1e-05  Score=65.38  Aligned_cols=62  Identities=18%  Similarity=0.079  Sum_probs=44.9

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHH-HHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGIL-EALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L-~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      ..+|+.||||||+++      ... ..+.+...+.+ +.+.++|+.++++|||+... +..+.+.+++..+
T Consensus         9 ~~lI~sDLDGTLL~~------~~~-~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~-~~~l~~~~~l~~p   71 (413)
T PLN02382          9 RLMIVSDLDHTMVDH------HDP-ENLSLLRFNALWEAEYRHDSLLVFSTGRSPTL-YKELRKEKPLLTP   71 (413)
T ss_pred             CEEEEEcCCCcCcCC------CCc-cchhHHHHHHHHHHhhcCCeeEEEEcCCCHHH-HHHHHHhCCCCCC
Confidence            356888999999983      111 13443344444 88999999999999999887 6888888876543

>PLN02580 trehalose-phosphatase

Probab=98.00  E-value=1.5e-05  Score=63.63  Aligned_cols=59  Identities=12%  Similarity=0.121  Sum_probs=46.6

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~   85 (156)
                      ...++|+|.||||.+.-    .+.+...+.++++++|++|.+. .+++|+|||+... +..++.-
T Consensus       118 k~~~LfLDyDGTLaPIv----~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~-L~~~l~~  176 (384)
T PLN02580        118 KKIALFLDYDGTLSPIV----DDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDK-VYELVGL  176 (384)
T ss_pred             CCeEEEEecCCccCCCC----CCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHH-HHHHhCC
Confidence            44678889999998732    3444557889999999999988 5899999999887 5766643

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []

Probab=98.00  E-value=1.6e-05  Score=59.53  Aligned_cols=50  Identities=20%  Similarity=0.316  Sum_probs=44.1

Q ss_pred             cccCCcHHHHHHHH--HHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610           47 PYLYPHAKGILEAL--KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV   97 (156)
Q Consensus        47 ~~l~~~~~~~L~~L--~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~   97 (156)
                      .++.||+.++++.+  .+.|+.++|+|...... +..+|+..|+...|..+++
T Consensus        70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~f-I~~iL~~~gl~~~f~~I~T  121 (234)
T PF06888_consen   70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFF-IETILEHHGLRDCFSEIFT  121 (234)
T ss_pred             CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhH-HHHHHHhCCCccccceEEe
Confidence            46899999999999  45899999999999888 7999999999998877654

It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=97.97  E-value=4.1e-06  Score=64.22  Aligned_cols=80  Identities=15%  Similarity=0.086  Sum_probs=55.5

Q ss_pred             cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE---EecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV---VIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~---~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      -++++.++++.|+++|+ ++|+||++........+...+...+|..+.   ........||+|.++..+++++++.|+++
T Consensus       144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~  222 (279)
T TIGR01452       144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART  222 (279)
T ss_pred             CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence            46889999999998887 789999886431111122334444444432   22334457999999999999999999988


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      ++|+
T Consensus       223 lmIG  226 (279)
T TIGR01452       223 LMVG  226 (279)
T ss_pred             EEEC
Confidence            7654

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []

Probab=97.96  E-value=6.2e-05  Score=52.94  Aligned_cols=63  Identities=16%  Similarity=0.153  Sum_probs=44.6

Q ss_pred             eEEEecCCcccccccccc--ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--HHHHHHHHc
Q 031610           24 LVVFDLDYTLWPFYCECC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKL   86 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~--~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--~~~~~l~~l   86 (156)
                      +|++|+|||+..+...-+  +.-......+|+.++.+.++++||++.=+|+|+...  ..+.++...
T Consensus         1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~   67 (157)
T PF08235_consen    1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH   67 (157)
T ss_pred             CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence            489999999997532110  111112578999999999999999999999999432  235555555

SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].

>TIGR00685 T6PP trehalose-phosphatase

Probab=97.91  E-value=1.6e-05  Score=59.84  Aligned_cols=52  Identities=19%  Similarity=0.158  Sum_probs=39.9

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHC-CCeEEEEcCCCChh
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPD   77 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~-G~~v~i~T~~~~~~   77 (156)
                      ..+++||+||||.+..    .......+.+++.++|+.|.+. +..++|+|||+...
T Consensus         3 ~~~l~lD~DGTL~~~~----~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~   55 (244)
T TIGR00685         3 KRAFFFDYDGTLSEIV----PDPDAAVVSDRLLTILQKLAARPHNAIWIISGRKFLE   55 (244)
T ss_pred             cEEEEEecCccccCCc----CCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCChhh
Confidence            4679999999999731    2233346789999999999776 46789999998655

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=97.89  E-value=2.6e-06  Score=64.69  Aligned_cols=80  Identities=8%  Similarity=-0.063  Sum_probs=60.2

Q ss_pred             cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccC---CCCCCHHHHHHHHHHhCCCCcCc
Q 031610           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT---KDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~---~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      .+++..++++.|++.+++++++||+.... ....+..+++..+|..+.+.....   ..||+|.++..+++++++.|+++
T Consensus       121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~-~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~  199 (257)
T TIGR01458       121 SYQILNQAFRLLLDGAKPLLIAIGKGRYY-KRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEA  199 (257)
T ss_pred             CHHHHHHHHHHHHcCCCCEEEEeCCCCCC-cCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhE
Confidence            46788899999999999999999988665 344445566666666544332222   26999999999999999999887


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      ++|+
T Consensus       200 ~~vG  203 (257)
T TIGR01458       200 VMIG  203 (257)
T ss_pred             EEEC
Confidence            6554

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=97.88  E-value=6.5e-05  Score=62.97  Aligned_cols=67  Identities=24%  Similarity=0.275  Sum_probs=55.4

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCC-CeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G-~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~   94 (156)
                      ....+++..||+++...      .....++|++.++|+.|+++| ++++++||.+... +...++++|++.+|..
T Consensus       363 g~~~~~v~~~~~~~g~i------~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~-a~~i~~~lgi~~~f~~  430 (556)
T TIGR01525       363 GKTVVFVAVDGELLGVI------ALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSA-AEAVAAELGIDEVHAE  430 (556)
T ss_pred             CcEEEEEEECCEEEEEE------EecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHH-HHHHHHHhCCCeeecc
Confidence            45678889999887531      112369999999999999999 9999999999888 7999999999877753

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase

Probab=97.78  E-value=5.4e-05  Score=59.72  Aligned_cols=52  Identities=21%  Similarity=0.166  Sum_probs=45.9

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc-C-------CCCCCceEEEec
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-G-------IHSMFVPMVVIY   99 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l-~-------l~~~f~~~~~~~   99 (156)
                      ....|++.++|++|+++|++++|+||++... +...++.+ +       +..+|+.++++.
T Consensus       183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~y-t~~im~~l~g~~~~~~~w~~yFD~IIt~a  242 (343)
T TIGR02244       183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDY-TDKGMKYLLGPFLGEHDWRDYFDVVIVDA  242 (343)
T ss_pred             hccchhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhhCCcccccchHhhCcEEEeCC
Confidence            3468999999999999999999999999988 79999996 7       889999887643

A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=97.77  E-value=8.5e-06  Score=61.19  Aligned_cols=78  Identities=5%  Similarity=-0.059  Sum_probs=57.3

Q ss_pred             CCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceE--EEecccCCCCCCHHHHHHHHHHhCCCC-cCce
Q 031610           50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM--VVIYMYTKDSSNASSSESTCAIFHFHP-KRSC  126 (156)
Q Consensus        50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~--~~~~~~~~~kp~p~~~~~~~~~~~~~~-~~~~  126 (156)
                      +++..++++.|.++|+++ ++||..... ....+..++...+|..+  .+.+.....||+|.++..++++++..+ ++++
T Consensus       140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~-~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~  217 (242)
T TIGR01459       140 LDEFDELFAPIVARKIPN-ICANPDRGI-NQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML  217 (242)
T ss_pred             HHHHHHHHHHHHhCCCcE-EEECCCEec-cCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence            688999999998899997 889998765 44455556655555543  344445578999999999999998764 5555


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      +|+
T Consensus       218 ~vG  220 (242)
T TIGR01459       218 MVG  220 (242)
T ss_pred             EEC
Confidence            443

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]

Probab=97.75  E-value=6.5e-05  Score=57.26  Aligned_cols=61  Identities=20%  Similarity=0.161  Sum_probs=48.2

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHC-CCeEEEEcCCCChhHHHHHHH
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLH   84 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~-G~~v~i~T~~~~~~~~~~~l~   84 (156)
                      ....+++++|.||||.+...    +.....+.+++.++|+.|.++ ...++|+|||+..+ ...++.
T Consensus        15 ~a~~~~~~lDyDGTl~~i~~----~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~-l~~~~~   76 (266)
T COG1877          15 NARKRLLFLDYDGTLTEIVP----HPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAE-LERLFG   76 (266)
T ss_pred             cccceEEEEecccccccccc----CccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHH-HHHhcC
Confidence            34568899999999998533    344457889999999999887 34699999999887 577665

>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins

Probab=97.60  E-value=8.3e-05  Score=53.88  Aligned_cols=30  Identities=23%  Similarity=0.365  Sum_probs=22.4

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCCh
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAP   76 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~   76 (156)
                      .++.||+.++|++|.+.|..+.++|+++..
T Consensus        72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~  101 (191)
T PF06941_consen   72 LPPIPGAVEALKKLRDKGHEIVIITARPPE  101 (191)
T ss_dssp             --B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred             CCccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence            468999999999999999877777777643

5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=97.55  E-value=0.00037  Score=58.26  Aligned_cols=65  Identities=22%  Similarity=0.204  Sum_probs=51.9

Q ss_pred             ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCC-eEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~-~v~i~T~~~~~~~~~~~l~~l~l~~~f~~   94 (156)
                      ..+++-.||++....      ....+++|++.++|++|+++|+ +++++||.+... +...++.+|++.+|..
T Consensus       343 ~~~~v~~~~~~~g~i------~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~-a~~i~~~lgi~~~f~~  408 (536)
T TIGR01512       343 TIVHVARDGTYLGYI------LLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAV-AERVARELGIDEVHAE  408 (536)
T ss_pred             eEEEEEECCEEEEEE------EEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHH-HHHHHHHcCChhhhhc
Confidence            445666777766421      1123689999999999999999 999999999888 8999999999887753

.

>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []

Probab=97.49  E-value=0.00013  Score=55.17  Aligned_cols=65  Identities=20%  Similarity=0.201  Sum_probs=40.7

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV   97 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~   97 (156)
                      ..++++|+||||+++      +.   .-.....+.++...+.++.++++|||+... +..+++..++.. -+++++
T Consensus         2 ~~ll~sDlD~Tl~~~------~~---~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~-~~~~~~~~~l~~-Pd~~I~   66 (247)
T PF05116_consen    2 PRLLASDLDGTLIDG------DD---EALARLEELLEQQARPEILFVYVTGRSLES-VLRLLREYNLPQ-PDYIIT   66 (247)
T ss_dssp             SEEEEEETBTTTBHC------HH---HHHHHHHHHHHHHHCCGEEEEEE-SS-HHH-HHHHHHHCT-EE--SEEEE
T ss_pred             CEEEEEECCCCCcCC------CH---HHHHHHHHHHHHhhCCCceEEEECCCCHHH-HHHHHHhCCCCC-CCEEEe
Confidence            367999999999941      11   111223334443447889999999999888 799998887642 244444

SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=97.47  E-value=0.00051  Score=57.76  Aligned_cols=62  Identities=26%  Similarity=0.334  Sum_probs=51.3

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~   89 (156)
                      ....+.++.||+++....      -..+++|++.++|++|+++|++++++||..... ++.+++.+|++
T Consensus       384 g~~~~~~~~~~~~~g~~~------~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~-a~~ia~~lgi~  445 (562)
T TIGR01511       384 GSTSVLVAVNGELAGVFA------LEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKT-AKAVAKELGIN  445 (562)
T ss_pred             CCEEEEEEECCEEEEEEE------ecccccHHHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHcCCc
Confidence            346688899999875211      112689999999999999999999999999888 79999999996

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=97.39  E-value=0.00032  Score=61.23  Aligned_cols=63  Identities=24%  Similarity=0.099  Sum_probs=46.3

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHC-CCeEEEEcCCCChhHHHHHHHHc
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKL   86 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~-G~~v~i~T~~~~~~~~~~~l~~l   86 (156)
                      ..++++|.||||.+..... .......+.|++.++|++|.+. +..++|+|||+... .++++...
T Consensus       507 ~rll~LDyDGTL~~~~~~~-~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~-L~~~~~~~  570 (797)
T PLN03063        507 NRLLILGFYGTLTEPRNSQ-IKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDI-LDKNFGEY  570 (797)
T ss_pred             CeEEEEecCccccCCCCCc-cccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHH-HHHHhCCC
Confidence            4789999999999631100 0112245788999999999764 67999999999888 68877643

>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3

Probab=97.37  E-value=0.00013  Score=54.44  Aligned_cols=48  Identities=27%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             EEecCCccccccccccccCCCcccCCcHHHHHHHHHHCC-CeEEEEcCCCChh
Q 031610           26 VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPD   77 (156)
Q Consensus        26 ~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G-~~v~i~T~~~~~~   77 (156)
                      |+|.||||.+.-.    ......+.+++.++|+.|.+.. ..++|+|||+...
T Consensus         1 ~lDyDGTL~p~~~----~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~   49 (235)
T PF02358_consen    1 FLDYDGTLAPIVD----DPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDD   49 (235)
T ss_dssp             EEE-TTTSS---S-----GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred             CcccCCccCCCCC----CccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH
Confidence            6899999998422    2344568899999999998764 4799999999665

1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.

>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=97.36  E-value=0.00017  Score=53.19  Aligned_cols=49  Identities=16%  Similarity=0.282  Sum_probs=43.6

Q ss_pred             cccCCcHHHHHHHHHHCCC-eEEEEcCCCChhHHHHHHHHcCCCCCCceEE
Q 031610           47 PYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~-~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~   96 (156)
                      .++.||+.++++.+++.|. .++|+|...... +..++++.++..+|..++
T Consensus        83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfF-Ie~~Lea~~~~d~F~~If  132 (256)
T KOG3120|consen   83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFF-IEEILEAAGIHDLFSEIF  132 (256)
T ss_pred             CCCCccHHHHHHHHHhCCCceEEEEecCchhH-HHHHHHHccHHHHHHHHh
Confidence            3588999999999999995 999999888888 799999999999888765

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=97.36  E-value=0.001  Score=52.79  Aligned_cols=98  Identities=15%  Similarity=0.106  Sum_probs=66.1

Q ss_pred             CCceEEEecCCcccccccccc---ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh-----------HHHHHHHHc
Q 031610           21 LPRLVVFDLDYTLWPFYCECC---YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD-----------IAKTFLHKL   86 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~---~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~-----------~~~~~l~~l   86 (156)
                      ..|.+.||+||||++......   ...+-..+++.+..-|..|.+.||.++|.||+....           .+..++..+
T Consensus        74 ~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl  153 (422)
T KOG2134|consen   74 GSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANL  153 (422)
T ss_pred             CcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhc
Confidence            467899999999998643211   001112478888899999999999999999876321           012223333


Q ss_pred             CCCCCCceEEEecccCCCCCCHHHHHHHHHHhCC
Q 031610           87 GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHF  120 (156)
Q Consensus        87 ~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~  120 (156)
                        .-.|............||...++....+..+-
T Consensus       154 --~vPi~~~~A~~~~~yRKP~tGMwe~~~~~~nd  185 (422)
T KOG2134|consen  154 --GVPIQLLAAIIKGKYRKPSTGMWEFLKRLEND  185 (422)
T ss_pred             --CCceEEeeeccCCcccCcchhHHHHHHHHhhc
Confidence              33454444444567799999999999987763

>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=97.23  E-value=0.00066  Score=59.90  Aligned_cols=63  Identities=21%  Similarity=0.098  Sum_probs=46.6

Q ss_pred             CceEEEecCCccccccccccccC-------CCcccCCcHHHHHHHHHHC-CCeEEEEcCCCChhHHHHHHHHcC
Q 031610           22 PRLVVFDLDYTLWPFYCECCYED-------EIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLG   87 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~-------~~~~l~~~~~~~L~~L~~~-G~~v~i~T~~~~~~~~~~~l~~l~   87 (156)
                      ..++|+|.||||.+....  +..       ....+.|++.++|+.|.+. +..++|+|||+... +..++..++
T Consensus       591 ~RLlfLDyDGTLap~~~~--P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~-Le~~fg~~~  661 (934)
T PLN03064        591 NRLLILGFNATLTEPVDT--PGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSV-LDENFGEFD  661 (934)
T ss_pred             ceEEEEecCceeccCCCC--cccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHH-HHHHhCCCC
Confidence            478999999999974221  110       0234778899999999764 67999999999888 688876653

>COG2503 Predicted secreted acid phosphatase [General function prediction only]

Probab=97.19  E-value=0.0013  Score=49.31  Aligned_cols=76  Identities=17%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             cCCCCCceEEEecCCcccccccc--c---------------cccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHH
Q 031610           17 QFENLPRLVVFDLDYTLWPFYCE--C---------------CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIA   79 (156)
Q Consensus        17 ~~~~~~k~i~fDlDGTL~~~~~~--~---------------~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~   79 (156)
                      ....+.++|+.|||.|++|....  .               +..-...++.||+.++++..-++|..++.+|||......
T Consensus        74 ~~k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~  153 (274)
T COG2503          74 KKKGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEK  153 (274)
T ss_pred             cccCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhccc
Confidence            34556679999999999984222  0               011223468899999999999999999999999865411


Q ss_pred             ---HHHHHHcCCCCCC
Q 031610           80 ---KTFLHKLGIHSMF   92 (156)
Q Consensus        80 ---~~~l~~l~l~~~f   92 (156)
                         ..-|...|+...-
T Consensus       154 ~~T~~nLk~~g~~~~~  169 (274)
T COG2503         154 DGTIENLKSEGLPQVL  169 (274)
T ss_pred             chhHHHHHHcCccccc
Confidence               2334556666543

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=0.0019  Score=46.52  Aligned_cols=40  Identities=23%  Similarity=0.195  Sum_probs=36.8

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~   87 (156)
                      ..+.||-+++++++++++++++++|++.... +.++++.+.
T Consensus        72 i~Idp~fKef~e~ike~di~fiVvSsGm~~f-I~~lfe~iv  111 (220)
T COG4359          72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPF-IYPLFEGIV  111 (220)
T ss_pred             cccCccHHHHHHHHHHcCCCEEEEeCCCchH-HHHHHHhhc
Confidence            3688999999999999999999999999998 799998876

>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]

Probab=97.08  E-value=0.002  Score=47.27  Aligned_cols=61  Identities=21%  Similarity=0.269  Sum_probs=46.5

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhH--HHHHHHHcCCC
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIH   89 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~--~~~~l~~l~l~   89 (156)
                      -..++.+++|+-|||..      +.    ...||+.+++++|+.++.++=+|||-....-  ....|.++|++
T Consensus         4 ~~~v~gvLlDlSGtLh~------e~----~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~   66 (262)
T KOG3040|consen    4 GRAVKGVLLDLSGTLHI------ED----AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD   66 (262)
T ss_pred             ccccceEEEeccceEec------cc----ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC
Confidence            34568899999999997      33    3779999999999999999999998764431  24445566654

>PRK10671 copA copper exporting ATPase; Provisional

Probab=97.08  E-value=0.0027  Score=55.80  Aligned_cols=87  Identities=10%  Similarity=0.110  Sum_probs=63.2

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM  100 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~  100 (156)
                      ....+++-.||+++.. .     .-..+++|++.++|+.|++.|++++++||..... ++.+++.+|++.+|..+     
T Consensus       629 g~~~v~va~~~~~~g~-~-----~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~-a~~ia~~lgi~~~~~~~-----  696 (834)
T PRK10671        629 GATPVLLAVDGKAAAL-L-----AIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTT-ANAIAKEAGIDEVIAGV-----  696 (834)
T ss_pred             CCeEEEEEECCEEEEE-E-----EccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCEEEeCC-----
Confidence            3456777788887641 1     1122688999999999999999999999999888 79999999997654321     


Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610          101 YTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus       101 ~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                            .|+....+++.++..++++
T Consensus       697 ------~p~~K~~~i~~l~~~~~~v  715 (834)
T PRK10671        697 ------LPDGKAEAIKRLQSQGRQV  715 (834)
T ss_pred             ------CHHHHHHHHHHHhhcCCEE
Confidence                  2444556777776655543

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=96.81  E-value=0.0052  Score=54.44  Aligned_cols=75  Identities=12%  Similarity=0.088  Sum_probs=57.4

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccC----------------CCCCCHHHH
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT----------------KDSSNASSS  111 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~----------------~~kp~p~~~  111 (156)
                      +++|++.++++.|+++|+++.++||..... +..+.+.+|+...+..++.+.+..                ...+.|+.-
T Consensus       528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~t-A~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K  606 (884)
T TIGR01522       528 PPRPGVKEAVTTLITGGVRIIMITGDSQET-AVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHK  606 (884)
T ss_pred             cchhHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHH
Confidence            689999999999999999999999999998 899999999987665443332221                124667777


Q ss_pred             HHHHHHhCCCCc
Q 031610          112 ESTCAIFHFHPK  123 (156)
Q Consensus       112 ~~~~~~~~~~~~  123 (156)
                      ..+.+.++-...
T Consensus       607 ~~iv~~lq~~g~  618 (884)
T TIGR01522       607 MKIVKALQKRGD  618 (884)
T ss_pred             HHHHHHHHHCCC
Confidence            777777664443

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway

Probab=96.76  E-value=0.011  Score=47.07  Aligned_cols=72  Identities=21%  Similarity=0.260  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhcc-CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH
Q 031610            5 EKVKNEALEIIGQ-FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (156)
Q Consensus         5 ~~~~~~~~~~~~~-~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l   83 (156)
                      --|.+.| ++|.. .....++|-||=|+||++       +|.......-++.-|-.|-++|++++|+|...... +.+.-
T Consensus       130 R~ILN~A-Qi~al~~~~~L~LvTFDgDvTLY~-------DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~-a~kY~  200 (408)
T PF06437_consen  130 RHILNTA-QIMALAKNYGLKLVTFDGDVTLYE-------DGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPG-AEKYE  200 (408)
T ss_pred             HHHHHHH-HHHHhcccCCceEEEEcCCccccc-------CCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCC-hHHHH
Confidence            3445444 34443 333889999999999997       33333344557776667778899999999776655 45544


Q ss_pred             HH
Q 031610           84 HK   85 (156)
Q Consensus        84 ~~   85 (156)
                      ++
T Consensus       201 ~R  202 (408)
T PF06437_consen  201 ER  202 (408)
T ss_pred             HH
Confidence            44

; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process

>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]

Probab=96.68  E-value=0.0045  Score=45.14  Aligned_cols=60  Identities=25%  Similarity=0.363  Sum_probs=42.9

Q ss_pred             ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC--CCCCCceEE
Q 031610           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG--IHSMFVPMV   96 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~--l~~~f~~~~   96 (156)
                      -+++||.||||..      +..   ...|.+.+.|+.|++. ..++++-++..    .+..+.+|  +...|++++
T Consensus        12 ~l~lfdvdgtLt~------~r~---~~~~e~~~~l~~lr~~-v~ig~VggsDl----~k~~eqlG~~Vl~~fDY~F   73 (252)
T KOG3189|consen   12 TLCLFDVDGTLTP------PRQ---KVTPEMLEFLQKLRKK-VTIGFVGGSDL----SKQQEQLGDNVLEEFDYVF   73 (252)
T ss_pred             eEEEEecCCcccc------ccc---cCCHHHHHHHHHHhhh-eEEEEeecHHH----HHHHHHhchhHHhhhcccc
Confidence            3688999999997      333   6889999999999876 88888877663    44455554  333455544

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=96.65  E-value=0.008  Score=51.90  Aligned_cols=78  Identities=22%  Similarity=0.244  Sum_probs=61.0

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCC
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTK  103 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~  103 (156)
                      .+++-.||.+.....-  .    .++.|++.++++.|++.|+++.++||-.... ++.+.+++|++.++-.+        
T Consensus       519 ~v~va~dg~~~g~i~~--~----D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~-A~~iA~~lGId~v~Ael--------  583 (713)
T COG2217         519 VVFVAVDGKLVGVIAL--A----DELRPDAKEAIAALKALGIKVVMLTGDNRRT-AEAIAKELGIDEVRAEL--------  583 (713)
T ss_pred             EEEEEECCEEEEEEEE--e----CCCChhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcChHhheccC--------
Confidence            6888999976642111  1    1688999999999999999999999999888 89999999997776432        


Q ss_pred             CCCCHHHHHHHHHHhC
Q 031610          104 DSSNASSSESTCAIFH  119 (156)
Q Consensus       104 ~kp~p~~~~~~~~~~~  119 (156)
                         .|+.-....++++
T Consensus       584 ---lPedK~~~V~~l~  596 (713)
T COG2217         584 ---LPEDKAEIVRELQ  596 (713)
T ss_pred             ---CcHHHHHHHHHHH
Confidence               4556666666665

>KOG1618 consensus Predicted phosphatase [General function prediction only]

Probab=96.61  E-value=0.005  Score=47.96  Aligned_cols=44  Identities=20%  Similarity=0.163  Sum_probs=37.2

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHC----CCeEEEEcCCCC
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK----GIHVAVASRSPA   75 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~----G~~v~i~T~~~~   75 (156)
                      .=.++||+||+|+.+       +   ++.|++.++|++|.++    .++++++||+..
T Consensus        35 ~fgfafDIDGVL~RG-------~---~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg   82 (389)
T KOG1618|consen   35 TFGFAFDIDGVLFRG-------H---RPIPGALKALRRLVDNQGQLKIPFVFLTNGGG   82 (389)
T ss_pred             ceeEEEecccEEEec-------C---CCCcchHHHHHHHHhcCCCeeccEEEEeCCCC
Confidence            346999999999973       2   6889999999999888    799999997753

>PLN02645 phosphoglycolate phosphatase

Probab=96.57  E-value=0.0012  Score=51.51  Aligned_cols=77  Identities=10%  Similarity=-0.022  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccC---CCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT---KDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~---~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      ...+...+++++-..+|+||.+........+...|...+|..+.......   ..||+|.++..+++.+++.++++++|+
T Consensus       175 l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VG  254 (311)
T PLN02645        175 IQYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVG  254 (311)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEc
Confidence            44456666543336788999886320112223345555565554333322   259999999999999999999876554

>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria

Probab=96.37  E-value=0.05  Score=41.31  Aligned_cols=93  Identities=15%  Similarity=0.165  Sum_probs=58.8

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH---HHcCCCC--C-------CceE----------EEec--ccCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL---HKLGIHS--M-------FVPM----------VVIY--MYTK  103 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l---~~l~l~~--~-------f~~~----------~~~~--~~~~  103 (156)
                      .+-+.+.+.++.|+++|+++..+|.++... ....+   .++|++-  .       +...          +..+  -...
T Consensus        81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~-~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~  159 (252)
T PF11019_consen   81 LIESDVPNIINSLQNKGIPVIALTARGPNM-EDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG  159 (252)
T ss_pred             EcchhHHHHHHHHHHCCCcEEEEcCCChhh-HHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence            355678889999999999999999998654 34444   4455531  1       1000          0000  0122


Q ss_pred             CCCCHHHHHHHHHHhCCCCcCceeEeeehhh---hHHHhhcccc
Q 031610          104 DSSNASSSESTCAIFHFHPKRSCSIFMFQQV---MIEMFQNRHS  144 (156)
Q Consensus       104 ~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~  144 (156)
                      .-++..++..++.+.+..|+.   |+|.++.   ...|-.++++
T Consensus       160 ~~~KG~~L~~fL~~~~~~pk~---IIfIDD~~~nl~sv~~a~k~  200 (252)
T PF11019_consen  160 GQDKGEVLKYFLDKINQSPKK---IIFIDDNKENLKSVEKACKK  200 (252)
T ss_pred             CCccHHHHHHHHHHcCCCCCe---EEEEeCCHHHHHHHHHHHhh
Confidence            355668999999999998884   6667655   4445555555

The function is not known.

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=96.05  E-value=0.059  Score=46.99  Aligned_cols=62  Identities=18%  Similarity=0.154  Sum_probs=50.7

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~   89 (156)
                      ....+++=.||+++....      -..+++|++.++|+.|++.|++++++||..... +..+.+.+|+.
T Consensus       547 g~~~v~va~~~~~~g~i~------l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~-a~~ia~~lgi~  608 (741)
T PRK11033        547 GKTVVLVLRNDDVLGLIA------LQDTLRADARQAISELKALGIKGVMLTGDNPRA-AAAIAGELGID  608 (741)
T ss_pred             CCEEEEEEECCEEEEEEE------EecCCchhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence            346677778888764211      112689999999999999999999999999888 89999999996

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=96.03  E-value=0.041  Score=47.43  Aligned_cols=81  Identities=11%  Similarity=0.081  Sum_probs=60.9

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM  100 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~  100 (156)
                      ..+.+++-.|++++.. .     .-..++.|++.++++.|++.|+++..+||-.... +..+.+++|++.+|        
T Consensus       424 G~~~l~va~~~~~lG~-i-----~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~T-A~aIA~elGId~v~--------  488 (679)
T PRK01122        424 GGTPLVVAEDNRVLGV-I-----YLKDIVKPGIKERFAELRKMGIKTVMITGDNPLT-AAAIAAEAGVDDFL--------  488 (679)
T ss_pred             CCcEEEEEECCeEEEE-E-----EEeccCchhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCcEEE--------
Confidence            3456777678887642 1     1112688999999999999999999999999998 89999999997543        


Q ss_pred             cCCCCCCHHHHHHHHHHhC
Q 031610          101 YTKDSSNASSSESTCAIFH  119 (156)
Q Consensus       101 ~~~~kp~p~~~~~~~~~~~  119 (156)
                         ..-.|+.-..+.+.++
T Consensus       489 ---A~~~PedK~~iV~~lQ  504 (679)
T PRK01122        489 ---AEATPEDKLALIRQEQ  504 (679)
T ss_pred             ---ccCCHHHHHHHHHHHH
Confidence               2336666677777664

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=96.01  E-value=0.04  Score=47.48  Aligned_cols=81  Identities=10%  Similarity=0.046  Sum_probs=59.1

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM  100 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~  100 (156)
                      ..+.+++-.|++++...      .-..++.|++.+++++|++.|+++.++||..... +..+.+++|++.++.       
T Consensus       425 G~r~l~va~~~~~lG~i------~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~t-a~~iA~~lGI~~v~a-------  490 (675)
T TIGR01497       425 GGTPLVVCEDNRIYGVI------YLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLT-AAAIAAEAGVDDFIA-------  490 (675)
T ss_pred             CCeEEEEEECCEEEEEE------EecccchhHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCEEEc-------
Confidence            34567776778876421      1112688999999999999999999999999888 899999999975442       


Q ss_pred             cCCCCCCHHHHHHHHHHhC
Q 031610          101 YTKDSSNASSSESTCAIFH  119 (156)
Q Consensus       101 ~~~~kp~p~~~~~~~~~~~  119 (156)
                          .-.|+.-..+.+.+.
T Consensus       491 ----~~~PedK~~~v~~lq  505 (675)
T TIGR01497       491 ----EATPEDKIALIRQEQ  505 (675)
T ss_pred             ----CCCHHHHHHHHHHHH
Confidence                234555555555553

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=95.70  E-value=0.054  Score=46.67  Aligned_cols=60  Identities=12%  Similarity=0.131  Sum_probs=50.8

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH  119 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~  119 (156)
                      ++.|++.+++++|++.|+++..+||..... +..+.+++|++.+|           ..-.|+.-..+.+.++
T Consensus       441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~T-A~aIA~elGI~~v~-----------A~~~PedK~~iV~~lQ  500 (673)
T PRK14010        441 VIKDGLVERFRELREMGIETVMCTGDNELT-AATIAKEAGVDRFV-----------AECKPEDKINVIREEQ  500 (673)
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCceEE-----------cCCCHHHHHHHHHHHH
Confidence            688999999999999999999999999998 89999999997643           2346777777777765

>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function

Probab=95.31  E-value=0.11  Score=35.66  Aligned_cols=58  Identities=21%  Similarity=0.249  Sum_probs=42.7

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEc--CCCChhHHHHHHHHcCCCCC
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS--RSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T--~~~~~~~~~~~l~~l~l~~~   91 (156)
                      +-++||||.++..+    +.     -.-...+.++++.+.|.++.|+|  +.++.. ++++...++-.-|
T Consensus        45 iAildL~G~~l~l~----S~-----R~~~~~evi~~I~~~G~PviVAtDV~p~P~~-V~Kia~~f~A~ly  104 (138)
T PF04312_consen   45 IAILDLDGELLDLK----SS-----RNMSRSEVIEWISEYGKPVIVATDVSPPPET-VKKIARSFNAVLY  104 (138)
T ss_pred             EEEEecCCcEEEEE----ee-----cCCCHHHHHHHHHHcCCEEEEEecCCCCcHH-HHHHHHHhCCccc
Confidence            35789999999731    11     22347789999999999999999  556666 6888777765444

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=95.13  E-value=0.021  Score=40.58  Aligned_cols=42  Identities=29%  Similarity=0.476  Sum_probs=36.1

Q ss_pred             CCcHH----HHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           50 YPHAK----GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        50 ~~~~~----~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      +|++.    ++|+.++++|++++|+|+++... +..+++.+++....
T Consensus        87 ~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~-i~~~~~~~~i~~~~  132 (192)
T PF12710_consen   87 FPGFIPDAMELIRELKDNGIKVVIVSGSPDEI-IEPIAERLGIDDDN  132 (192)
T ss_dssp             CTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHH-HHHHHHHTTSSEGG
T ss_pred             CcCchhhHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCCceE
Confidence            46666    99999999999999999998776 79999999988743

>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3

Probab=95.08  E-value=0.035  Score=45.57  Aligned_cols=50  Identities=20%  Similarity=0.243  Sum_probs=36.6

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc---------CCCCCCceEEEe
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---------GIHSMFVPMVVI   98 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l---------~l~~~f~~~~~~   98 (156)
                      ...|.+...|++|+++|.+++++||++... +...+..+         .+..+|+.+++.
T Consensus       183 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~y-t~~~M~yl~g~~~~~~~dW~dlFDvVIv~  241 (448)
T PF05761_consen  183 HKDPKLPPWLERLRSAGKKLFLITNSPFDY-TNAVMSYLLGPFLGEDPDWRDLFDVVIVD  241 (448)
T ss_dssp             E--CHHHHHHHHHHCCT-EEEEE-SS-HHH-HHHHHHHHCGCCSSTTT-GGGCECEEEES
T ss_pred             cCCchHHHHHHHHHhcCceEEEecCCCCch-hhhhhhhccCCCCCCCCChhhheeEEEEc
Confidence            456789999999999999999999999888 68887754         355688887753

1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....

>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]

Probab=94.98  E-value=0.033  Score=47.21  Aligned_cols=71  Identities=14%  Similarity=0.095  Sum_probs=47.3

Q ss_pred             CCCceEEEecCCcccccccccc--ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCCh--hHHHHHHHHcCCCC
Q 031610           20 NLPRLVVFDLDYTLWPFYCECC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP--DIAKTFLHKLGIHS   90 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~--~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~--~~~~~~l~~l~l~~   90 (156)
                      +.-|+|+.|+|||+.-..+--+  +.-....-..|+..+..+.++.||++..||+|+.-  .+.+.+|..+.-++
T Consensus       528 Wn~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG  602 (738)
T KOG2116|consen  528 WNDKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDG  602 (738)
T ss_pred             cCCcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcC
Confidence            3457899999999986433211  11111124458999999999999999999998742  22356666655444

>COG4087 Soluble P-type ATPase [General function prediction only]

Probab=94.92  E-value=0.15  Score=34.85  Aligned_cols=84  Identities=10%  Similarity=0.091  Sum_probs=60.4

Q ss_pred             EEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCC
Q 031610           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKD  104 (156)
Q Consensus        25 i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~  104 (156)
                      ..-++++|+..       .+   .+++.+.+.|+.|++. +.++|+|+....+ ....++..|++-..  +.       .
T Consensus        17 ~~~~v~~tiat-------gG---klf~ev~e~iqeL~d~-V~i~IASgDr~gs-l~~lae~~gi~~~r--v~-------a   75 (152)
T COG4087          17 KAGKVLYTIAT-------GG---KLFSEVSETIQELHDM-VDIYIASGDRKGS-LVQLAEFVGIPVER--VF-------A   75 (152)
T ss_pred             ecceEEEEEcc-------Cc---EEcHhhHHHHHHHHHh-heEEEecCCcchH-HHHHHHHcCCceee--ee-------c
Confidence            45577788774       34   7999999999999999 9999999888777 68888888864322  22       2


Q ss_pred             CCCHHHHHHHHHHhCCCCcCceeEe
Q 031610          105 SSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus       105 kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      ..++++-..+++.++-..+.+.+|+
T Consensus        76 ~a~~e~K~~ii~eLkk~~~k~vmVG  100 (152)
T COG4087          76 GADPEMKAKIIRELKKRYEKVVMVG  100 (152)
T ss_pred             ccCHHHHHHHHHHhcCCCcEEEEec
Confidence            4467777778887765445554443

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=94.73  E-value=0.0076  Score=45.51  Aligned_cols=78  Identities=12%  Similarity=-0.019  Sum_probs=46.5

Q ss_pred             cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC---CCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI---HSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l---~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      .++...+++..++ +|.+ .++||..... -...-...+.   ...+....+.+.....||+|.++..+++.+++.++++
T Consensus       122 ~y~~l~~a~~~l~-~g~~-~i~tN~D~~~-~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~  198 (249)
T TIGR01457       122 DYEKFATATLAIR-KGAH-FIGTNGDLAI-PTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREET  198 (249)
T ss_pred             CHHHHHHHHHHHH-CCCe-EEEECCCCCC-CCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccE
Confidence            4455667777774 5777 7788877533 1110000010   0112222233344557999999999999999999887


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      ++|+
T Consensus       199 ~~VG  202 (249)
T TIGR01457       199 LMVG  202 (249)
T ss_pred             EEEC
Confidence            6544

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]

Probab=94.64  E-value=0.034  Score=43.01  Aligned_cols=77  Identities=19%  Similarity=0.201  Sum_probs=48.6

Q ss_pred             CCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC--CCc-e---EEEecccCCCCCCHHHHHHHHHHhCCCCc
Q 031610           50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MFV-P---MVVIYMYTKDSSNASSSESTCAIFHFHPK  123 (156)
Q Consensus        50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~--~f~-~---~~~~~~~~~~kp~p~~~~~~~~~~~~~~~  123 (156)
                      |+....+++.|++-+. ++++||+....   .......+.+  .+. .   .......-..||++.++..+.+++++.|+
T Consensus       167 y~KL~kA~~yLqnP~c-lflatn~D~~~---p~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~~~l~~~~~i~ps  242 (306)
T KOG2882|consen  167 YPKLMKALNYLQNPGC-LFLATNRDATT---PPTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTFMFEYLLEKFNIDPS  242 (306)
T ss_pred             HHHHHHHHHHhCCCCc-EEEeccCcccc---CCCCCeeccCCccHHHHHHHHhcCCCeecCCCCHHHHHHHHHHcCCCcc
Confidence            4556679999987765 45789887421   1111111111  111 1   11122334469999999999999999999


Q ss_pred             CceeEee
Q 031610          124 RSCSIFM  130 (156)
Q Consensus       124 ~~~~v~~  130 (156)
                      ++++|+-
T Consensus       243 Rt~mvGD  249 (306)
T KOG2882|consen  243 RTCMVGD  249 (306)
T ss_pred             eEEEEcc
Confidence            9998863

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=94.47  E-value=0.26  Score=44.08  Aligned_cols=42  Identities=21%  Similarity=0.341  Sum_probs=38.8

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      ++.|++.++|+.|+++|+++.++||..... +....+.+|+..
T Consensus       537 plr~~v~e~I~~l~~aGI~v~miTGD~~~t-A~~ia~~~gi~~  578 (917)
T TIGR01116       537 PPRPEVADAIEKCRTAGIRVIMITGDNKET-AEAICRRIGIFS  578 (917)
T ss_pred             CCchhHHHHHHHHHHCCCEEEEecCCCHHH-HHHHHHHcCCCC
Confidence            589999999999999999999999999888 799999999854

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B

Probab=94.07  E-value=0.074  Score=32.33  Aligned_cols=27  Identities=11%  Similarity=0.078  Sum_probs=24.1

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610          103 KDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus       103 ~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      ..||+|.++..+++.++++++++++|+
T Consensus         2 ~gKP~p~~~~~a~~~~~~~~~~~~~VG   28 (75)
T PF13242_consen    2 CGKPSPGMLEQALKRLGVDPSRCVMVG   28 (75)
T ss_dssp             CSTTSHHHHHHHHHHHTSGGGGEEEEE
T ss_pred             CCCCcHHHHHHHHHHcCCCHHHEEEEc
Confidence            369999999999999999999987665

...

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=93.90  E-value=0.19  Score=44.66  Aligned_cols=41  Identities=22%  Similarity=0.231  Sum_probs=38.7

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~   89 (156)
                      ++.|++.++++.|+++|+++.++||..... +..+.+++|+.
T Consensus       515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~t-A~aIA~~lGI~  555 (867)
T TIGR01524       515 PPKESTKEAIAALFKNGINVKVLTGDNEIV-TARICQEVGID  555 (867)
T ss_pred             CCchhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence            688999999999999999999999999888 89999999996

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=93.81  E-value=0.2  Score=44.74  Aligned_cols=41  Identities=22%  Similarity=0.281  Sum_probs=38.7

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~   89 (156)
                      ++.|++.++++.|+++|+++.++||-.... +..+.+++|+.
T Consensus       550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~~IA~~lGI~  590 (902)
T PRK10517        550 PPKETTAPALKALKASGVTVKILTGDSELV-AAKVCHEVGLD  590 (902)
T ss_pred             cchhhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence            688999999999999999999999999888 89999999995

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=93.79  E-value=0.22  Score=44.43  Aligned_cols=41  Identities=20%  Similarity=0.245  Sum_probs=38.7

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~   89 (156)
                      ++.|++.++++.|+++|+++.++||-.... +..+.+++|+.
T Consensus       550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~aIA~~lGI~  590 (903)
T PRK15122        550 PPKESAAPAIAALRENGVAVKVLTGDNPIV-TAKICREVGLE  590 (903)
T ss_pred             ccHHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence            688999999999999999999999999888 89999999995

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=93.78  E-value=0.12  Score=45.29  Aligned_cols=42  Identities=19%  Similarity=0.232  Sum_probs=39.5

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      ++.|++.++++.|+++|+++.++||..... +..+.+++|+..
T Consensus       442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~~IA~~lGI~~  483 (755)
T TIGR01647       442 PPRHDTKETIERARHLGVEVKMVTGDHLAI-AKETARRLGLGT  483 (755)
T ss_pred             CChhhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCC
Confidence            688999999999999999999999999988 899999999965

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>PLN02177 glycerol-3-phosphate acyltransferase

Probab=93.77  E-value=0.79  Score=38.28  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=25.4

Q ss_pred             HHHHHHHCCCeEEEEcCCCChhHHHHHHHH-cCCCCC
Q 031610           56 ILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSM   91 (156)
Q Consensus        56 ~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~-l~l~~~   91 (156)
                      +++.++++|.+ +|+|+.+... ++.+.++ +|++..
T Consensus       115 a~~~~~~~g~~-vvVSASp~~~-Vepfa~~~LGid~V  149 (497)
T PLN02177        115 TWRVFNSFGKR-YIITASPRIM-VEPFVKTFLGADKV  149 (497)
T ss_pred             HHHHHHhCCCE-EEEECCcHHH-HHHHHHHcCCCCEE
Confidence            44556677865 8999999776 7999976 787753

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=93.71  E-value=0.094  Score=47.26  Aligned_cols=41  Identities=17%  Similarity=0.177  Sum_probs=38.4

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~   89 (156)
                      ++.|++.++++.|+++|+++.++||+.... +..+.+.+|+.
T Consensus       568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~t-a~~ia~~~gi~  608 (997)
T TIGR01106       568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAIAKGVGII  608 (997)
T ss_pred             CChHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence            688999999999999999999999999998 79999999984

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=93.20  E-value=0.46  Score=42.71  Aligned_cols=42  Identities=21%  Similarity=0.315  Sum_probs=39.2

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      ++.|++.++++.|+++|+++.++||..... +..+.+.+|+..
T Consensus       579 plr~~~~~aI~~l~~aGI~v~miTGD~~~t-A~~iA~~~GI~~  620 (941)
T TIGR01517       579 PLRPGVREAVQECQRAGITVRMVTGDNIDT-AKAIARNCGILT  620 (941)
T ss_pred             CCchhHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCCC
Confidence            688999999999999999999999999998 899999999864

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>COG4850 Uncharacterized conserved protein [Function unknown]

Probab=93.17  E-value=0.26  Score=38.70  Aligned_cols=53  Identities=21%  Similarity=0.102  Sum_probs=41.8

Q ss_pred             EEEecCCcccccccccc---------ccCCCcccCCcHHHHHHHHHHCC-CeEEEEcCCCChh
Q 031610           25 VVFDLDYTLWPFYCECC---------YEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPD   77 (156)
Q Consensus        25 i~fDlDGTL~~~~~~~~---------~~~~~~~l~~~~~~~L~~L~~~G-~~v~i~T~~~~~~   77 (156)
                      ++.|||.|+..+++...         .+.....++||+-...+.|.+.| ..++-+||++...
T Consensus       164 iISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~  226 (373)
T COG4850         164 IISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQL  226 (373)
T ss_pred             eeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHh
Confidence            88999999988776532         11122368999999999999888 8999999999764

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=93.03  E-value=0.65  Score=41.14  Aligned_cols=65  Identities=18%  Similarity=0.272  Sum_probs=52.9

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      ..-.+.+=+||+|.....      -...+.|++..++..|++.|++++.+||-.... ++...+++|++..+
T Consensus       702 g~tvv~v~vn~~l~gv~~------l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a-A~svA~~VGi~~V~  766 (951)
T KOG0207|consen  702 GQTVVYVAVNGQLVGVFA------LEDQVRPDAALAVAELKSMGIKVVMLTGDNDAA-ARSVAQQVGIDNVY  766 (951)
T ss_pred             CceEEEEEECCEEEEEEE------eccccchhHHHHHHHHHhcCceEEEEcCCCHHH-HHHHHHhhCcceEE
Confidence            456788899999986322      122688999999999999999999999999888 89999999955443

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=92.46  E-value=0.068  Score=38.52  Aligned_cols=17  Identities=24%  Similarity=-0.013  Sum_probs=14.0

Q ss_pred             CceEEEecCCccccccc
Q 031610           22 PRLVVFDLDYTLWPFYC   38 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~   38 (156)
                      +++|+||.||||++...
T Consensus         1 i~~i~fDktGTLt~~~~   17 (215)
T PF00702_consen    1 IDAICFDKTGTLTQGKM   17 (215)
T ss_dssp             ESEEEEECCTTTBESHH
T ss_pred             CeEEEEecCCCcccCeE
Confidence            47899999999998533

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]

Probab=92.46  E-value=0.59  Score=31.80  Aligned_cols=84  Identities=19%  Similarity=0.269  Sum_probs=56.2

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM  100 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~  100 (156)
                      .++++.||+|-|+|+.|++++-+....+...       .+.+.|..+++..--.  . ...-++.+|+.    .++.+  
T Consensus         4 ~p~~~~fdldytiwP~~vdthl~~pfkP~k~-------~~g~~g~e~~fY~Di~--r-IL~dLk~~GVt----l~~AS--   67 (144)
T KOG4549|consen    4 KPEAMQFDLDYTIWPRLVDTHLDYPFKPFKC-------ECGSKGEEMIFYDDIR--R-ILVDLKKLGVT----LIHAS--   67 (144)
T ss_pred             CCceeEEeccceeeeEEEEeccccccccccc-------CcccCcceeeeccchh--H-HHHHHHhcCcE----EEEec--
Confidence            5689999999999999998776654332222       2337788887764322  2 24445666653    33333  


Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCc
Q 031610          101 YTKDSSNASSSESTCAIFHFHPK  123 (156)
Q Consensus       101 ~~~~kp~p~~~~~~~~~~~~~~~  123 (156)
                         ..+.|+...++++.+.+.+-
T Consensus        68 ---Rt~ap~iA~q~L~~fkvk~~   87 (144)
T KOG4549|consen   68 ---RTMAPQIASQGLETFKVKQT   87 (144)
T ss_pred             ---CCCCHHHHHHHHHHhccCcc
Confidence               47889999999999987543

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=92.21  E-value=0.26  Score=44.74  Aligned_cols=42  Identities=21%  Similarity=0.297  Sum_probs=38.9

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      ++.|++.++++.|+++|+++.++||....+ +..+.+++|+..
T Consensus       656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~T-A~~iA~~~gii~  697 (1054)
T TIGR01657       656 PLKPDTKEVIKELKRASIRTVMITGDNPLT-AVHVARECGIVN  697 (1054)
T ss_pred             CCCccHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCC
Confidence            588999999999999999999999999998 899999999853

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=92.17  E-value=0.3  Score=36.77  Aligned_cols=92  Identities=13%  Similarity=0.072  Sum_probs=52.1

Q ss_pred             CCcHHHHHHHHHHCCCeEEEEcCCCCh-h---HHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           50 YPHAKGILEALKEKGIHVAVASRSPAP-D---IAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~-~---~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ++++.+.++.++..+..+.++++.+.. .   ....+.+.+++...+......+-....-.++..+..+++.+++.++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~  218 (272)
T PRK10530        139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV  218 (272)
T ss_pred             eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence            456667777777777777777765431 1   122333344432110000001111122346678999999999999887


Q ss_pred             eeEeeehhhhHHHhhcc
Q 031610          126 CSIFMFQQVMIEMFQNR  142 (156)
Q Consensus       126 ~~v~~~~~~~~~~~~~~  142 (156)
                      .+++ -+.+++.|+++-
T Consensus       219 i~~G-D~~NDi~m~~~a  234 (272)
T PRK10530        219 VAFG-DNFNDISMLEAA  234 (272)
T ss_pred             EEeC-CChhhHHHHHhc
Confidence            6554 566788888643

>COG3700 AphA Acid phosphatase (class B) [General function prediction only]

Probab=92.11  E-value=0.36  Score=34.86  Aligned_cols=47  Identities=11%  Similarity=0.138  Sum_probs=30.5

Q ss_pred             cHHHHHHHHHHCCCeEEEEcCCCChhHHHH----HHHHcCCCCCCceEEEec
Q 031610           52 HAKGILEALKEKGIHVAVASRSPAPDIAKT----FLHKLGIHSMFVPMVVIY   99 (156)
Q Consensus        52 ~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~----~l~~l~l~~~f~~~~~~~   99 (156)
                      -++++|..-+++|=.++++|||.+-. ...    +.+.+.+.......+.++
T Consensus       118 vA~qLI~MHq~RGD~i~FvTGRt~gk-~d~vsk~Lak~F~i~~m~pv~f~Gd  168 (237)
T COG3700         118 VARQLIDMHQRRGDAIYFVTGRTPGK-TDTVSKTLAKNFHITNMNPVIFAGD  168 (237)
T ss_pred             HHHHHHHHHHhcCCeEEEEecCCCCc-ccccchhHHhhcccCCCcceeeccC
Confidence            35557777778999999999998643 233    334566666655555443

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=92.03  E-value=0.27  Score=44.71  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=39.1

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      ++.|++.++++.|+++|+++.++||....+ +..+.+.+|+..
T Consensus       646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~t-A~~iA~~~Gi~~  687 (1053)
T TIGR01523       646 PPRNESAGAVEKCHQAGINVHMLTGDFPET-AKAIAQEVGIIP  687 (1053)
T ss_pred             CCchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCCC
Confidence            588999999999999999999999999998 899999999853

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>TIGR02886 spore_II_AA anti-sigma F factor antagonist

Probab=91.97  E-value=1.2  Score=28.54  Aligned_cols=74  Identities=18%  Similarity=0.286  Sum_probs=48.8

Q ss_pred             cHHHHHHHHHHHhccCCCCCceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHH
Q 031610            3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT   81 (156)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~   81 (156)
                      .++++.....+.+..  +..+.+++|+-++=. |      +.+     ........+.++++|.++.++.-++  . +.+
T Consensus        22 ~~~~~~~~l~~~~~~--~~~~~vilDls~v~~iD------ssg-----i~~L~~~~~~~~~~g~~l~l~~~~~--~-v~~   85 (106)
T TIGR02886        22 TAERVRRKIDDAIER--RPIKHLILNLKNVTFMD------SSG-----LGVILGRYKKIKNEGGEVIVCNVSP--A-VKR   85 (106)
T ss_pred             hHHHHHHHHHHHHHh--CCCCEEEEECCCCcEec------chH-----HHHHHHHHHHHHHcCCEEEEEeCCH--H-HHH
Confidence            456666555555432  246789999998843 3      221     1224457788999999998875433  4 688


Q ss_pred             HHHHcCCCCCC
Q 031610           82 FLHKLGIHSMF   92 (156)
Q Consensus        82 ~l~~l~l~~~f   92 (156)
                      .++..|+...+
T Consensus        86 ~l~~~gl~~~~   96 (106)
T TIGR02886        86 LFELSGLFKII   96 (106)
T ss_pred             HHHHhCCceEE
Confidence            89998987766

The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes

>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]

Probab=91.92  E-value=0.94  Score=33.99  Aligned_cols=87  Identities=16%  Similarity=0.222  Sum_probs=63.3

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC----C----CCCCceEEEecccCCCCCCHHHHHHHHHHhC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG----I----HSMFVPMVVIYMYTKDSSNASSSESTCAIFH  119 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~----l----~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~  119 (156)
                      .+++.+..++++.++.|++++|.|+++..  +++++-...    +    .+||+--++      .|.....|..+.+.++
T Consensus       123 ~v~aDv~~a~e~w~~~g~~vyIYSSgsv~--AqKllfg~s~~gdl~~y~~gyfDt~iG------~K~e~~sy~~I~~~Ig  194 (254)
T KOG2630|consen  123 HVYADVLPAIERWSGEGVRVYIYSSGSVA--AQKLLFGYSDAGDLRKYISGYFDTTIG------LKVESQSYKKIGHLIG  194 (254)
T ss_pred             cccchhHHHHHHHhhcCceEEEEcCCcHH--HHHHHHcccCcchHHHHhhhhhhcccc------ceehhHHHHHHHHHhC
Confidence            58999999999999999999999999855  466664432    2    223433222      5777889999999999


Q ss_pred             CCCcCceeEeeehhhhHHHhhccccc
Q 031610          120 FHPKRSCSIFMFQQVMIEMFQNRHSM  145 (156)
Q Consensus       120 ~~~~~~~~v~~~~~~~~~~~~~~~~~  145 (156)
                      .++++   +++.||.-.+...++..+
T Consensus       195 ~s~~e---iLfLTd~~~Ea~aa~~aG  217 (254)
T KOG2630|consen  195 KSPRE---ILFLTDVPREAAAARKAG  217 (254)
T ss_pred             CChhh---eEEeccChHHHHHHHhcc
Confidence            99854   677787766666555444

>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]

Probab=91.76  E-value=0.35  Score=42.54  Aligned_cols=46  Identities=20%  Similarity=0.244  Sum_probs=41.2

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      .+++++++++++.|+++|+++..+||-...+ +..+.+++|+...-+
T Consensus       583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~T-A~AI~r~iGi~~~~e  628 (972)
T KOG0202|consen  583 DPPRPEVADAIELCRQAGIRVIMITGDNKET-AEAIAREIGIFSEDE  628 (972)
T ss_pred             CCCchhHHHHHHHHHHcCCEEEEEcCCCHHH-HHHHHHHhCCCcCCc
Confidence            3689999999999999999999999999998 899999999765544

>PRK10444 UMP phosphatase; Provisional

Probab=91.75  E-value=0.052  Score=41.03  Aligned_cols=29  Identities=3%  Similarity=0.010  Sum_probs=24.5

Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610          101 YTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus       101 ~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      ....||+|.++..+++.+++.++++++|+
T Consensus       170 ~~~gKP~~~~~~~~~~~~~~~~~~~v~IG  198 (248)
T PRK10444        170 FYVGKPSPWIIRAALNKMQAHSEETVIVG  198 (248)
T ss_pred             cccCCCCHHHHHHHHHHcCCCcccEEEEC
Confidence            33469999999999999999999877654

>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=91.53  E-value=0.074  Score=40.58  Aligned_cols=67  Identities=19%  Similarity=0.100  Sum_probs=50.1

Q ss_pred             CCCceEEEecCCcccccc--cccc--------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH
Q 031610           20 NLPRLVVFDLDYTLWPFY--CECC--------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~--~~~~--------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l   83 (156)
                      ...|.+++|||+||+...  ....              ...-...-+|++.++|.++.+- +.+++.|+..... +.+++
T Consensus        87 ~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Y-a~~v~  164 (262)
T KOG1605|consen   87 VGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEVY-ADPLL  164 (262)
T ss_pred             CCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHHH-HHHHH
Confidence            356889999999998654  2210              1111223578999999999765 8999999999888 89999


Q ss_pred             HHcCC
Q 031610           84 HKLGI   88 (156)
Q Consensus        84 ~~l~l   88 (156)
                      ..+.-
T Consensus       165 D~LD~  169 (262)
T KOG1605|consen  165 DILDP  169 (262)
T ss_pred             HHccC
Confidence            98876

>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]

Probab=91.50  E-value=0.75  Score=40.65  Aligned_cols=46  Identities=17%  Similarity=0.157  Sum_probs=41.0

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      .+..||++++++.|+++|+.+--+||....+ ++.+..+.|+...=.
T Consensus       646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~T-AkAIA~eCGILt~~~  691 (1034)
T KOG0204|consen  646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINT-AKAIARECGILTPGG  691 (1034)
T ss_pred             CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHH-HHHHHHHcccccCCC
Confidence            4689999999999999999999999999998 899999999865443

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=91.39  E-value=0.11  Score=36.84  Aligned_cols=13  Identities=46%  Similarity=0.452  Sum_probs=11.4

Q ss_pred             EEEecCCcccccc
Q 031610           25 VVFDLDYTLWPFY   37 (156)
Q Consensus        25 i~fDlDGTL~~~~   37 (156)
                      ++||+||||+...
T Consensus         1 v~fD~DGTL~~~~   13 (192)
T PF12710_consen    1 VIFDFDGTLTDSD   13 (192)
T ss_dssp             EEEESBTTTBSSH
T ss_pred             eEEecCcCeecCC
Confidence            6899999999864

>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]

Probab=91.29  E-value=0.4  Score=38.72  Aligned_cols=45  Identities=13%  Similarity=0.143  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH---cCCCCCCceEEEe
Q 031610           53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHK---LGIHSMFVPMVVI   98 (156)
Q Consensus        53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~---l~l~~~f~~~~~~   98 (156)
                      ....|..+++.|.+..+.||..... ....+..   .++..+|+.+++.
T Consensus       203 ~v~~l~~~r~sGKk~fl~Tns~~~y-td~~mt~~~~~dW~~yfd~v~~~  250 (424)
T KOG2469|consen  203 IVPLLSMLRDSGKKTFLHTNSDWDY-TDIFMAFHYGFDWETYFDLVETR  250 (424)
T ss_pred             cccchHHHHhhccceEEeeccccch-hhHHHHHHhCCCcceeEEEEEEe
Confidence            3348899999999999999998776 4555443   2566678776643

>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation

Probab=90.81  E-value=1.8  Score=27.90  Aligned_cols=71  Identities=24%  Similarity=0.260  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHhccCCCCCceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHH
Q 031610            4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF   82 (156)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~   82 (156)
                      ++++..+..+.+..  +..+.+++|+-|+=+ |      +.+     .....++.+.++++|.++.++--+  +. +.+.
T Consensus        25 a~~~~~~l~~~~~~--~~~~~vvlDls~v~~iD------ssg-----~~~l~~~~~~~~~~g~~l~l~g~~--~~-v~~~   88 (109)
T cd07041          25 AEQLQERLLEAISR--RRARGVIIDLTGVPVID------SAV-----ARHLLRLARALRLLGARTILTGIR--PE-VAQT   88 (109)
T ss_pred             HHHHHHHHHHHHHH--cCCCEEEEECCCCchhc------HHH-----HHHHHHHHHHHHHcCCeEEEEeCC--HH-HHHH
Confidence            45555444444432  255789999988743 4      222     123556778888999999988444  44 6888


Q ss_pred             HHHcCCCC
Q 031610           83 LHKLGIHS   90 (156)
Q Consensus        83 l~~l~l~~   90 (156)
                      ++..|++.
T Consensus        89 l~~~gl~~   96 (109)
T cd07041          89 LVELGIDL   96 (109)
T ss_pred             HHHhCCCh
Confidence            99988876

The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=90.34  E-value=0.58  Score=41.95  Aligned_cols=44  Identities=23%  Similarity=0.235  Sum_probs=40.4

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      ++.++++++++.|+++|+++..+||-...+ +..+.+++|+..--
T Consensus       547 ppr~~v~~aI~~l~~AGI~v~MiTGD~~~T-A~aIa~~~Gi~~~~  590 (917)
T COG0474         547 PPREDVKEAIEELREAGIKVWMITGDHVET-AIAIAKECGIEAEA  590 (917)
T ss_pred             CCCccHHHHHHHHHHCCCcEEEECCCCHHH-HHHHHHHcCCCCCC
Confidence            789999999999999999999999999998 89999999976554

>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant

Probab=90.18  E-value=0.86  Score=41.33  Aligned_cols=56  Identities=20%  Similarity=0.278  Sum_probs=40.8

Q ss_pred             EecCCccccccccccccCCCcccCCcHHHHHHHHH----HCCCeEEEEcCCCChhHHHHHHHHcCCCC-CCceEEE
Q 031610           27 FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALK----EKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVPMVV   97 (156)
Q Consensus        27 fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~----~~G~~v~i~T~~~~~~~~~~~l~~l~l~~-~f~~~~~   97 (156)
                      .|+|+| .+             ..+.+.+++++++    +..+-++++||++... +..++...++.. .|+.++|
T Consensus       777 ~D~d~~-~~-------------~~~~l~~~~~~~~~~~~~~~igfv~aTGR~l~~-~~~~l~~~~lp~~~PD~lI~  837 (1050)
T TIGR02468       777 VDCYDD-KD-------------LLQIIKNIFEAVRKERMEGSSGFILSTSMTISE-IQSFLKSGGLNPTDFDALIC  837 (1050)
T ss_pred             eccCCC-CC-------------hHHHHHHHHHHHhccccCCceEEEEEcCCCHHH-HHHHHHhCCCCCCCCCEEEe
Confidence            799999 32             2244556677775    3338899999999998 799999998863 6666654

Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.

>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]

Probab=89.69  E-value=0.33  Score=39.67  Aligned_cols=55  Identities=13%  Similarity=0.097  Sum_probs=36.7

Q ss_pred             CCCceEEEecCCcccccccccc---ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610           20 NLPRLVVFDLDYTLWPFYCECC---YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~---~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~   75 (156)
                      +..+.|++|||||+.-+...-+   --++ ..-.-|+..+-...-+.||++.-.|+|+.
T Consensus       373 ~n~kiVVsDiDGTITkSD~~Ghv~~miGk-dwth~gVAkLYtdI~rNGYkI~YltsR~~  430 (580)
T COG5083         373 NNKKIVVSDIDGTITKSDALGHVKQMIGK-DWTHNGVAKLYTDIDRNGYKIKYLTSRSY  430 (580)
T ss_pred             CCCcEEEEecCCcEEehhhHHHHHHHhcc-chhhcchhhhhhhhccCceEEEEEecccc
Confidence            3457899999999986433211   0011 12345677777777789999999998874

>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists

Probab=89.47  E-value=0.64  Score=30.41  Aligned_cols=76  Identities=14%  Similarity=0.330  Sum_probs=53.2

Q ss_pred             cHHHHHHHHHHHhccCC------CCCceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610            3 DLEKVKNEALEIIGQFE------NLPRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (156)
Q Consensus         3 ~~~~~~~~~~~~~~~~~------~~~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~   75 (156)
                      .++++............      ..++.+++|+.+.-. |      +.     -.....++.+.++++|.++.++.-+  
T Consensus        23 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD------ss-----gi~~L~~~~~~~~~~g~~~~l~~~~--   89 (117)
T PF01740_consen   23 NAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFID------SS-----GIQALVDIIKELRRRGVQLVLVGLN--   89 (117)
T ss_dssp             HHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEES------HH-----HHHHHHHHHHHHHHTTCEEEEESHH--
T ss_pred             HHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCC------HH-----HHHHHHHHHHHHHHCCCEEEEEECC--
Confidence            45677766666666654      457899999988732 3      11     2234567888899999999988543  


Q ss_pred             hhHHHHHHHHcCCCCCC
Q 031610           76 PDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        76 ~~~~~~~l~~l~l~~~f   92 (156)
                      +. +...+...|+...+
T Consensus        90 ~~-v~~~l~~~~~~~~~  105 (117)
T PF01740_consen   90 PD-VRRILERSGLIDFI  105 (117)
T ss_dssp             HH-HHHHHHHTTGHHHS
T ss_pred             HH-HHHHHHHcCCChhc
Confidence            34 68888998887666

It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....

>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]

Probab=89.45  E-value=0.3  Score=38.87  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=36.5

Q ss_pred             cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc---CCCCCCceEEE
Q 031610           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GIHSMFVPMVV   97 (156)
Q Consensus        49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l---~l~~~f~~~~~   97 (156)
                      --|.+.+.|++|+++|.+++++||++.+. +.+-++.+   .+...|+.++.
T Consensus       241 r~~ql~~fl~kL~~~GKklFLiTNSPysF-Vd~GM~flvG~~WRdlFDVVIv  291 (510)
T KOG2470|consen  241 RNPQLLAFLRKLKDHGKKLFLITNSPYSF-VDKGMRFLVGDDWRDLFDVVIV  291 (510)
T ss_pred             ccHHHHHHHHHHHHhcCcEEEEeCCchhh-hhcCceeeeCccHHhhhheeEE
Confidence            34577889999999999999999999888 56655543   34456777654

>PLN02499 glycerol-3-phosphate acyltransferase

Probab=89.21  E-value=0.61  Score=38.79  Aligned_cols=34  Identities=15%  Similarity=0.215  Sum_probs=27.8

Q ss_pred             HHHHHHHCCCeEEEEcCCCChhHHHHHHHH-cCCCCC
Q 031610           56 ILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSM   91 (156)
Q Consensus        56 ~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~-l~l~~~   91 (156)
                      .++..+++| +++++|..+... ++..+++ +|.+..
T Consensus       101 ~~~~~~~~g-~~vVVTAsPrvm-VEpFake~LG~D~V  135 (498)
T PLN02499        101 AWKVFSSCD-KRVVVTRMPRVM-VERFAKEHLRADEV  135 (498)
T ss_pred             HHHHHHcCC-eEEEEeCCHHHH-HHHHHHHhcCCceE
Confidence            566667788 999999999887 7999998 887654

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC

Probab=89.16  E-value=3.6  Score=34.22  Aligned_cols=62  Identities=26%  Similarity=0.252  Sum_probs=47.9

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l   88 (156)
                      +..+.+++=.+++++..-.      -..++.|++.++++.|+++|+++.++||..... +....+.+|+
T Consensus       325 ~g~~~~~~a~~~~~~g~i~------l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~-a~~ia~~lgi  386 (499)
T TIGR01494       325 SGLRVLAVASKETLLGLLG------LEDPLRDDAKETISELREAGIRVIMLTGDNVLT-AKAIAKELGI  386 (499)
T ss_pred             CCCEEEEEEECCeEEEEEE------ecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCc
Confidence            3445566667777664211      112688999999999999999999999999888 7999899986

The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.

>COG0731 Fe-S oxidoreductases [Energy production and conversion]

Probab=88.61  E-value=3.7  Score=32.01  Aligned_cols=36  Identities=28%  Similarity=0.536  Sum_probs=30.0

Q ss_pred             cccCCcHHHHHHHHHHCC-CeEEEEcCCCChhHHHHHH
Q 031610           47 PYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFL   83 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G-~~v~i~T~~~~~~~~~~~l   83 (156)
                      ++++|..-+.++.+++.| ++++++||++.+. +...+
T Consensus        91 PTLy~~L~elI~~~k~~g~~~tflvTNgslpd-v~~~L  127 (296)
T COG0731          91 PTLYPNLGELIEEIKKRGKKTTFLVTNGSLPD-VLEEL  127 (296)
T ss_pred             cccccCHHHHHHHHHhcCCceEEEEeCCChHH-HHHHh
Confidence            479999999999999999 7999999999655 34433

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase

Probab=88.33  E-value=0.68  Score=42.15  Aligned_cols=43  Identities=19%  Similarity=0.131  Sum_probs=38.8

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      ++.|++.++++.|+++|+++.++||-...+ +..+....|+-..
T Consensus       631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~T-A~~IA~~~~ii~~  673 (1057)
T TIGR01652       631 KLQEGVPETIELLRQAGIKIWVLTGDKVET-AINIGYSCRLLSR  673 (1057)
T ss_pred             hhhhccHHHHHHHHHCCCeEEEEcCCcHHH-HHHHHHHhCCCCC
Confidence            688999999999999999999999999888 7999888887543

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.

>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors

Probab=87.62  E-value=4.1  Score=25.85  Aligned_cols=73  Identities=16%  Similarity=0.138  Sum_probs=47.5

Q ss_pred             CcHHHHHHHHHHHhccCCCCCceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHH
Q 031610            2 GDLEKVKNEALEIIGQFENLPRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAK   80 (156)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~   80 (156)
                      +.++++.....+....  +..+.+++|+-++=+ |      +.     -.....++.+.++++|.++.++.-+  .. +.
T Consensus        21 ~~~~~~~~~l~~~~~~--~~~~~vilDls~v~~iD------ss-----gl~~L~~l~~~~~~~g~~l~l~~~~--~~-v~   84 (100)
T cd06844          21 HSVEQFKEELLHNITN--VAGKTIVIDISALEFMD------SS-----GTGVLLERSRLAEAVGGQFVLTGIS--PA-VR   84 (100)
T ss_pred             hhHHHHHHHHHHHHHh--CCCCEEEEECCCCcEEc------HH-----HHHHHHHHHHHHHHcCCEEEEECCC--HH-HH
Confidence            3456666555444432  346789999988743 3      22     2233556778889999999888543  44 68


Q ss_pred             HHHHHcCCCC
Q 031610           81 TFLHKLGIHS   90 (156)
Q Consensus        81 ~~l~~l~l~~   90 (156)
                      ..++..|+..
T Consensus        85 ~~l~~~gl~~   94 (100)
T cd06844          85 ITLTESGLDK   94 (100)
T ss_pred             HHHHHhCchh
Confidence            8888888765

The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.

>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation

Probab=87.48  E-value=5  Score=24.86  Aligned_cols=58  Identities=21%  Similarity=0.304  Sum_probs=39.3

Q ss_pred             CceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           22 PRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        22 ~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      .+.+++|+.++=. |      +     ....-..++.+.++++|..+.++.-+  .. +.+.++..|+...|.
T Consensus        38 ~~~viid~~~v~~iD------s-----~g~~~L~~l~~~~~~~g~~v~i~~~~--~~-~~~~l~~~gl~~~~~   96 (99)
T cd07043          38 PRRLVLDLSGVTFID------S-----SGLGVLLGAYKRARAAGGRLVLVNVS--PA-VRRVLELTGLDRLFP   96 (99)
T ss_pred             CCEEEEECCCCCEEc------c-----hhHHHHHHHHHHHHHcCCeEEEEcCC--HH-HHHHHHHhCcceeee
Confidence            5789999988732 3      1     12233556778888899887766433  45 689999999876653

Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.

>TIGR00377 ant_ant_sig anti-anti-sigma factor

Probab=86.65  E-value=6.2  Score=25.11  Aligned_cols=60  Identities=20%  Similarity=0.280  Sum_probs=40.5

Q ss_pred             CCCceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           20 NLPRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      +..+.+++|+.+.=. |      +.+     ..-..++.++++++|..+.++.-+  +. ....++..|+...+.
T Consensus        41 ~~~~~vvidls~v~~iD------ssg-----l~~L~~~~~~~~~~~~~~~l~~~~--~~-~~~~l~~~~l~~~~~  101 (108)
T TIGR00377        41 TGPRPIVLDLEDLEFMD------SSG-----LGVLLGRYKQVRRVGGQLVLVSVS--PR-VARLLDITGLLRIIP  101 (108)
T ss_pred             cCCCeEEEECCCCeEEc------ccc-----HHHHHHHHHHHHhcCCEEEEEeCC--HH-HHHHHHHhChhheec
Confidence            356789999988732 3      211     122445677788899988877543  34 588899999877654

This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.

>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]

Probab=85.51  E-value=2.3  Score=37.73  Aligned_cols=82  Identities=20%  Similarity=0.134  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhccCCCCCceEEEecCCcccccc--ccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHH
Q 031610            5 EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFY--CECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF   82 (156)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~--~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~   82 (156)
                      +||++-+.--+.+. .-++-..||+|---.+.+  +-..--.-..++.+.+.+++..++++|++++.+|+.-+.+ +...
T Consensus       546 erVlgF~~~~l~~~-~~p~~~~f~~d~~n~p~~nl~FlGl~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiT-AkAi  623 (1019)
T KOG0203|consen  546 ERVLGFCDLELPDE-KFPRGFQFDTDDVNFPTDNLRFLGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAI  623 (1019)
T ss_pred             hHHHHHHHHhcchh-cCCCceEeecCCCCCcchhccccchhhccCCCcccCchhhhhhhhhCceEEEEecCccch-hhhh
Confidence            46765544444433 445667888876654421  1111111223577888899999999999999999998888 7888


Q ss_pred             HHHcCC
Q 031610           83 LHKLGI   88 (156)
Q Consensus        83 l~~l~l   88 (156)
                      .+..|+
T Consensus       624 A~~vgI  629 (1019)
T KOG0203|consen  624 AKSVGI  629 (1019)
T ss_pred             hhheee
Confidence            887774

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=82.56  E-value=5.7  Score=30.55  Aligned_cols=66  Identities=11%  Similarity=0.062  Sum_probs=41.9

Q ss_pred             cHHHHHHHHHHCCCeEEEEcCCCChh-----------HHHHHHHHc-CCCCCCceEEEecccCCCCCCHHHHHHHHHHhC
Q 031610           52 HAKGILEALKEKGIHVAVASRSPAPD-----------IAKTFLHKL-GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH  119 (156)
Q Consensus        52 ~~~~~L~~L~~~G~~v~i~T~~~~~~-----------~~~~~l~~l-~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~  119 (156)
                      ...+++..+++ | --+||||.....           .....++.. |...          .-..||++.++..+++.++
T Consensus       137 ~l~~a~~~i~~-g-~~fI~tNpD~~~p~~~g~~pgaGai~~~~~~~tg~~~----------~~~GKP~~~i~~~al~~~~  204 (269)
T COG0647         137 KLAEALLAIAA-G-APFIATNPDLTVPTERGLRPGAGAIAALLEQATGREP----------TVIGKPSPAIYEAALEKLG  204 (269)
T ss_pred             HHHHHHHHHHc-C-CcEEEeCCCccccCCCCCccCcHHHHHHHHHhhCCcc----------cccCCCCHHHHHHHHHHhC
Confidence            35567777655 4 666799887432           011222221 2211          1225999999999999999


Q ss_pred             CCCcCceeEe
Q 031610          120 FHPKRSCSIF  129 (156)
Q Consensus       120 ~~~~~~~~v~  129 (156)
                      ..++++++|+
T Consensus       205 ~~~~~~~mVG  214 (269)
T COG0647         205 LDRSEVLMVG  214 (269)
T ss_pred             CCcccEEEEc
Confidence            9999887765

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

Probab=82.41  E-value=5.7  Score=33.55  Aligned_cols=60  Identities=12%  Similarity=0.177  Sum_probs=48.2

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH  119 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~  119 (156)
                      .+-||.+|-+..||+-|++-+-|||.++-+ +..+..+-|++++..           ...|+.-..+.++.+
T Consensus       447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~T-Aa~IA~EAGVDdfiA-----------eatPEdK~~~I~~eQ  506 (681)
T COG2216         447 IVKPGIKERFAELRKMGIKTVMITGDNPLT-AAAIAAEAGVDDFIA-----------EATPEDKLALIRQEQ  506 (681)
T ss_pred             hcchhHHHHHHHHHhcCCeEEEEeCCCHHH-HHHHHHHhCchhhhh-----------cCChHHHHHHHHHHH
Confidence            366999999999999999999999999888 788889999988763           335566666666543

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=82.24  E-value=0.64  Score=34.72  Aligned_cols=23  Identities=9%  Similarity=0.225  Sum_probs=20.9

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcCc
Q 031610          103 KDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus       103 ~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ..||+|.++..+++++++.+.++
T Consensus       186 ~~KP~~~~~~~~~~~~~~~~~~~  208 (236)
T TIGR01460       186 VGKPSPAIYRAALNLLQARPERR  208 (236)
T ss_pred             ecCCCHHHHHHHHHHhCCCCccc
Confidence            56999999999999999988876

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>PLN03190 aminophospholipid translocase; Provisional

Probab=82.20  E-value=2.5  Score=39.07  Aligned_cols=43  Identities=19%  Similarity=0.129  Sum_probs=38.0

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      ++.+++.++++.|+++|+++.++||....+ +..+....++-..
T Consensus       726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~t-Ai~IA~s~~Ll~~  768 (1178)
T PLN03190        726 KLQQGVPEAIESLRTAGIKVWVLTGDKQET-AISIGYSSKLLTN  768 (1178)
T ss_pred             CCchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHhCCCCC
Confidence            688999999999999999999999999888 7888888877443

>PRK13762 tRNA-modifying enzyme; Provisional

Probab=81.70  E-value=5.7  Score=31.27  Aligned_cols=31  Identities=26%  Similarity=0.612  Sum_probs=27.1

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~   77 (156)
                      +.++|...++++.+++.|+.++|.||+....
T Consensus       141 PlL~p~l~eli~~~k~~Gi~~~L~TNG~~~e  171 (322)
T PRK13762        141 PTLYPYLPELIEEFHKRGFTTFLVTNGTRPD  171 (322)
T ss_pred             ccchhhHHHHHHHHHHcCCCEEEECCCCCHH
Confidence            3577889999999999999999999997654

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=81.22  E-value=6.5  Score=28.62  Aligned_cols=34  Identities=3%  Similarity=-0.042  Sum_probs=25.7

Q ss_pred             CHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhc
Q 031610          107 NASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQN  141 (156)
Q Consensus       107 ~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  141 (156)
                      ++..+..+++.+|++++++..++ -+.+++.|++.
T Consensus       180 Kg~al~~l~~~lgi~~~~vi~~G-D~~NDi~ml~~  213 (221)
T TIGR02463       180 KGKAANWLKATYNQPDVKTLGLG-DGPNDLPLLEV  213 (221)
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEC-CCHHHHHHHHh
Confidence            55578999999999998876554 56667777753

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>COG2044 Predicted peroxiredoxins [General function prediction only]

Probab=80.77  E-value=12  Score=25.14  Aligned_cols=49  Identities=16%  Similarity=0.154  Sum_probs=33.9

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~   74 (156)
                      .+||=+||+-+=....  ........+|-..+.++.+.++|.++.+|.-..
T Consensus        37 ~iF~t~dG~~l~~K~~--~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~s~   85 (120)
T COG2044          37 TIFFTMDGVTLVKKKV--AEKIKHPNFPPLEELIKQAIEAGVKIYVCEQSL   85 (120)
T ss_pred             EEEEEeccceeeeecc--hhhhcCCCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence            3888999985421110  112222466889999999999999999997544

>TIGR00815 sulP high affinity sulphate transporter 1

Probab=80.63  E-value=8.4  Score=32.68  Aligned_cols=78  Identities=17%  Similarity=0.220  Sum_probs=51.4

Q ss_pred             CcHHHHHHHHHHHhc------cCCCCCceEEEecCCcc-ccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610            2 GDLEKVKNEALEIIG------QFENLPRLVVFDLDYTL-WPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (156)
Q Consensus         2 ~~~~~~~~~~~~~~~------~~~~~~k~i~fDlDGTL-~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~   74 (156)
                      |.+++++.+..+...      ...+..+.+++|+.++- +|      .     .-.....+..++++++|.++.++--+ 
T Consensus       468 ~na~~~~~~l~~~~~~~~~~~~~~~~~~~vIlD~~~V~~iD------s-----Sg~~~L~~l~~~l~~~g~~l~l~~~~-  535 (563)
T TIGR00815       468 ANAEDLKDRLLKRIEDETRRELERPPLQVVILDMSAVPHLD------T-----SGIHALEELRKELKARGIQLLLANPN-  535 (563)
T ss_pred             CcHHHHHHHHHHHHhhhccccccCCCceEEEEECCCCCcch------H-----HHHHHHHHHHHHHHHcCCEEEEecCC-
Confidence            456677766555554      23334689999998763 33      1     12233566778889999999888543 


Q ss_pred             ChhHHHHHHHHcCCCCCCc
Q 031610           75 APDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        75 ~~~~~~~~l~~l~l~~~f~   93 (156)
                       +. +++.+++.|+...+.
T Consensus       536 -~~-v~~~l~~~gl~~~~~  552 (563)
T TIGR00815       536 -KA-VRSTLKRGGLVELIG  552 (563)
T ss_pred             -hH-HHHHHHHCCchhhcC
Confidence             44 688899988876653

(2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=80.62  E-value=7  Score=33.72  Aligned_cols=99  Identities=9%  Similarity=0.033  Sum_probs=62.3

Q ss_pred             CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC-CCce-EEEecccCCCCCCHHHHHHHHHHhCCCCc
Q 031610           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVP-MVVIYMYTKDSSNASSSESTCAIFHFHPK  123 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~-~f~~-~~~~~~~~~~kp~p~~~~~~~~~~~~~~~  123 (156)
                      ..++.|++.++|+.+.+. +.+.|+|-+.+.+ +..+++-+.... +|.. +++.++....|        ......+.|.
T Consensus       199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~Y-A~~i~~liDP~~~lF~dRIisrde~~~~k--------t~dL~~~~p~  268 (635)
T KOG0323|consen  199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDY-ALEIAKLIDPEGKYFGDRIISRDESPFFK--------TLDLVLLFPC  268 (635)
T ss_pred             EEEeCccHHHHHHHHHhh-ceeEEEeccchHH-HHHHHHHhCCCCccccceEEEecCCCccc--------ccccccCCCC
Confidence            346899999999999876 9999999999888 799998887665 4544 55655533222        2233334455


Q ss_pred             CceeEeeehhh--hHHHhh-cccccccccccccc
Q 031610          124 RSCSIFMFQQV--MIEMFQ-NRHSMLDLNSSKNT  154 (156)
Q Consensus       124 ~~~~v~~~~~~--~~~~~~-~~~~~~~~~~~~~~  154 (156)
                      ..-+|++.++.  +-.+.. |-.+.-.|.||+++
T Consensus       269 g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~  302 (635)
T KOG0323|consen  269 GDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQ  302 (635)
T ss_pred             CCccEEEEeCccccccCCCcceEEeeeeecccCc
Confidence            54455555554  222222 33444556666554

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=80.42  E-value=12  Score=23.49  Aligned_cols=39  Identities=15%  Similarity=0.261  Sum_probs=24.6

Q ss_pred             HHHHHHHHHH--CCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           53 AKGILEALKE--KGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        53 ~~~~L~~L~~--~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      ..++++.+++  .+.+++++|+..... .....-+.|..+++
T Consensus        58 ~~~~~~~i~~~~~~~~ii~~t~~~~~~-~~~~~~~~g~~~~l   98 (112)
T PF00072_consen   58 GLELLEQIRQINPSIPIIVVTDEDDSD-EVQEALRAGADDYL   98 (112)
T ss_dssp             HHHHHHHHHHHTTTSEEEEEESSTSHH-HHHHHHHTTESEEE
T ss_pred             ccccccccccccccccEEEecCCCCHH-HHHHHHHCCCCEEE
Confidence            4466777766  348999999777655 23334466655444

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
1u7o_A	164	Magnesium Dependent Phosphatase 1 (Mdp-1) Length =		3e-06
2wm8_A	187	Crystal Structure Of Human Magnesium-Dependent Phos		3e-06

>pdb|1U7O|A Chain A, Magnesium Dependent Phosphatase 1 (Mdp-1) Length = 164

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
           LP+L VFDLDYTLWPF+ +   +                +   LYP    +L  L+  G
Sbjct: 3  RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLG 62
Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          + VA ASR+     A   L    +   F+
Sbjct: 63 VPVAAASRTSEIQGANQLLELFDLGKYFI 91

>pdb|2WM8|A Chain A, Crystal Structure Of Human Magnesium-Dependent Phosphatase 1 Of The Haloacid Dehalogenase Superfamily (Mgc5987) Length = 187

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 20  NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
            LP+L VFDLDYTLWPF+ +   +                +   LYP    +L+ L+  G
Sbjct: 25  RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLG 84
Query: 65  IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
           +  A ASR+   + A   L    +   FV
Sbjct: 85  VPGAAASRTSEIEGANQLLELFDLFRYFV 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	8e-21
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	5e-07
1te2_A	226	Putative phosphatase; structural genomics, phospha	2e-06
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	4e-06
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	6e-06
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	8e-06
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	1e-05
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	1e-05
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	1e-05
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	2e-05
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	2e-05
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	2e-05
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	3e-05
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	4e-05
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	6e-05
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	8e-05
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	1e-04
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	1e-04
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	1e-04
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	1e-04
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	2e-04
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	2e-04
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	2e-04
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	3e-04
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	3e-04
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	4e-04
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	4e-04
2zg6_A	220	Putative uncharacterized protein ST2620, probable	5e-04
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	5e-04
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	7e-04
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	7e-04
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	8e-04

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A Length = 187

 Score = 82.8 bits (204), Expect = 8e-21
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 14  IIGQFENLPRLVVFDLDYTLWPFYCECCYEDEI---------------PYLYPHAKGILE 58
                  LP+L VFDLDYTLWPF+ +   +                    LYP    +L+
Sbjct: 19  YFQSMARLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLK 78

Query: 59  ALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95
            L+  G+  A ASR+   + A   L    +   FV  
Sbjct: 79  RLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHR 115

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6 Length = 226

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 42  YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
            E+  P L P  +  +   KE+G+ V +AS SP   + +  L    +   F
Sbjct: 89  VEETRP-LLPGVREAVALCKEQGLLVGLASASP-LHMLEKVLTMFDLRDSF 137

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A Length = 243

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 10/48 (20%), Positives = 18/48 (37%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
             P A  +L+ +K +G+   V + S    + +   H          MV
Sbjct: 110 RMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELMV 157

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13 Length = 384

 Score = 43.6 bits (102), Expect = 6e-06
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 42  YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI 98
           Y++ I       K +L  LK  G  + +A+  P  +        LG+   F    + 
Sbjct: 209 YQEIILRPVDEVKVLLNDLKGAGFELGIATGRPYTE-TVVPFENLGLLPYFEADFIA 264

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A* Length = 205

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 43/117 (36%)

Query: 22  PRLVVFDLDYTL----------------------------WP---------FYCECCYED 44
            +  VFD+D TL                             P         +  E  +E 
Sbjct: 6   IKHWVFDMDGTLTIAVHDFAAIREALSIPAEDDILTHLAALPADESAAKHAWLLE--HER 63

Query: 45  EIP---YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI 98
           ++       P A  ++  L  +G  + + +R+    +A   L  +G+   F    V+
Sbjct: 64  DLAQGSRPAPGAVELVRELAGRGYRLGILTRNARE-LAHVTLEAIGLADCFAEADVL 119

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} Length = 284

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 20/87 (22%)

Query: 8  KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHV 67
                ++ +++     + FD    L          +    L P  +   + LK +G   
Sbjct: 4  IESFKSLLPKYK----CIFFDAFGVLK-------TYNG---LLPGIENTFDYLKAQGQDY 49

Query: 68 AV----ASRSPAPDIAKTFLHKLGIHS 90
           +    ASRSP   +A    HKLG+ S
Sbjct: 50 YIVTNDASRSPE-QLAD-SYHKLGLFS 74

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV} Length = 233

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 42  YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
            + +I    P A  +LE L ++ +   +A+     D A   L  L +    + +V
Sbjct: 86  LQHQII-ALPGAVELLETLDKENLKWCIATSGG-IDTATINLKALKLDINKINIV 138

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus} Length = 247

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 10/48 (20%), Positives = 16/48 (33%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
             P A  +L  +K +G+   V + S    +     H          MV
Sbjct: 109 RMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNHNFPGIFQANLMV 156

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311} Length = 214

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           ++P    +L  +K +G+ + +AS S         L +  +   F
Sbjct: 90  IFPDVLKVLNEVKSQGLEIGLASSSV-KADIFRALEENRLQGFF 132

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli} Length = 243

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 37  YCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           Y     E  +  + P  + +L  L+ + I V +AS S     A T L  L +   F
Sbjct: 84  YVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSL---NAPTILAALELREFF 136

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A Length = 258

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 12/70 (17%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKT 81
          ++V FD+D TL         + ++P         +  LK+ G++VA+A+ R+P   + + 
Sbjct: 4  KIVFFDIDGTLLDE------QKQLP---LSTIEAVRRLKQSGVYVAIATGRAPF--MFEH 52

Query: 82 FLHKLGIHSM 91
             +LGI S 
Sbjct: 53 VRKQLGIDSF 62

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14 Length = 264

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 15/71 (21%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          +  + DLD T++          E     P  K  +E L+EK +         ++SP   +
Sbjct: 6  QGYLIDLDGTIY-------LGKE---PIPAGKRFVERLQEKDLPFLFVTNNTTKSPE-TV 54

Query: 79 AKTFLHKLGIH 89
          A+   ++  IH
Sbjct: 55 AQRLANEFDIH 65

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A Length = 227

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 12/72 (16%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKT 81
          RL   D+D  L         +  I      A   + + ++KG+ V++ S       +   
Sbjct: 6  RLAAIDVDGNLTDR------DRLIS---TKAIESIRSAEKKGLTVSLLSGNVIP--VVYA 54

Query: 82 FLHKLGIHSMFV 93
              LGI+    
Sbjct: 55 LKIFLGINGPVF 66

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A Length = 259

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 44  DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV 97
             +      A   L AL+  G+  A+ S S    +    L   G+  +    + 
Sbjct: 107 TGVT-AIEGAAETLRALRAAGVPFAIGSNSERGRLHLK-LRVAGLTELAGEHIY 158

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis} Length = 233

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           L P    +L  LK + I + +AS S     A   L +L I   F
Sbjct: 93  LLPGIGRLLCQLKNENIKIGLASSSR---NAPKILRRLAIIDDF 133

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14 Length = 250

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 16/71 (22%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          + V+ D+D  L        +++      P A   L  + +KG+ + +     S++   D+
Sbjct: 4  KNVICDIDGVLM-------HDNV---AVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQ-DL 52

Query: 79 AKTFLHKLGIH 89
          A       G+ 
Sbjct: 53 AN-RFATAGVD 62

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A* Length = 271

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 20/88 (22%)

Query: 6  KVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI 65
          K+ +    ++ + E    L + D+D T +        +D    L P +   LE LKEK  
Sbjct: 5  KIHHHHHHVLDKIE----LFILDMDGTFY-------LDDS---LLPGSLEFLETLKEKNK 50

Query: 66 HVAV----ASRSPAPDIAKTFLHKLGIH 89
                  +S      + K  L  +G+ 
Sbjct: 51 RFVFFTNNSSLGAQDYVRK--LRNMGVD 76

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} Length = 268

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 16/71 (22%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          +  + D+D  +                 P     ++ LKE G  +      ++RS    +
Sbjct: 9  KGYIIDIDGVIG-------KSVT---PIPEGVEGVKKLKELGKKIIFVSNNSTRSRR-IL 57

Query: 79 AKTFLHKLGIH 89
           +  L   G+ 
Sbjct: 58 LER-LRSFGLE 67

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A Length = 221

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           +YP    +L+ L+   I +A+AS S         L ++ +   F
Sbjct: 92  VYPGILQLLKDLRSNKIKIALASASK---NGPFLLERMNLTGYF 132

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* Length = 306

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 21/93 (22%)

Query: 1  MGDLEKVKNEAL-EIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEA 59
          +   E+++  AL +++G+ +     V+FD D  LW         +      P A  +LE 
Sbjct: 3  LARCERLRGAALRDVLGRAQG----VLFDCDGVLW-------NGER---AVPGAPELLER 48

Query: 60 LKEKGIHVAV----ASRSPAPDIAKTFLHKLGI 88
          L   G         + R+      +    +LG 
Sbjct: 49 LARAGKAALFVSNNSRRARPELALR--FARLGF 79

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A Length = 264

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 16/71 (22%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          +  + DLD T++                P  +  +E L+EKGI   +     +R+P   +
Sbjct: 6  KGYLIDLDGTIY-------KGKS---RIPAGERFIERLQEKGIPYMLVTNNTTRTPE-SV 54

Query: 79 AKTFLHKLGIH 89
           +  L    + 
Sbjct: 55 QE-MLRGFNVE 64

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} Length = 266

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 16/71 (22%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          +  + DLD T++          E       A   +  LK++G+        +SR+P   +
Sbjct: 7  KGYLIDLDGTMY-------NGTE---KIEEACEFVRTLKDRGVPYLFVTNNSSRTPK-QV 55

Query: 79 AKTFLHKLGIH 89
          A   L    I 
Sbjct: 56 AD-KLVSFDIP 65

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis} Length = 231

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           L   A  +L+ LKE  I +A+ S     +  ++ +H   +   F
Sbjct: 104 LNDGAIELLDTLKENNITMAIVSNKN-GERLRSEIHHKNLTHYF 146

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} Length = 263

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 16/69 (23%)

Query: 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDIAK 80
          ++FD+D  L+         +      P  + ++E LKE+GI  A     ++++P     +
Sbjct: 4  IIFDMDGVLY-------RGNR---AIPGVRELIEFLKERGIPFAFLTNNSTKTPE-MYRE 52

Query: 81 TFLHKLGIH 89
            L K+GI 
Sbjct: 53 K-LLKMGID 60

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A Length = 267

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV 97
                K ++ +L+E+GI +   +      +      +  +       +V
Sbjct: 104 PINGVKEVIASLRERGIKIGSTTGYTRE-MMDIVAKEAALQGYKPDFLV 151

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} Length = 220

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 17  QFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP 76
             ++   ++       L     E    D   +LY      LE LK  G  +A+ S +  P
Sbjct: 64  DPKDFLYILGIYPSERLVKELKEADIRDGEAFLYDDTLEFLEGLKSNGYKLALVSNAS-P 122

Query: 77  DIAKTFLHKLGIHSMF 92
            +    L K  +   F
Sbjct: 123 RVKTL-LEKFDLKKYF 137

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6 Length = 207

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           L P A+ +L    E GI   + +     + A T L  LG+ S F
Sbjct: 86  LMPGAREVLAWADESGIQQFIYTH--KGNNAFTILKDLGVESYF 127

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} Length = 274

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 12/69 (17%)

Query: 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKTF 82
          L++ D+D TL            IP     AK  +   ++    V + + RS      +  
Sbjct: 7  LLILDIDGTLRD------EVYGIP---ESAKHAIRLCQKNHCSVVICTGRSMG--TIQDD 55

Query: 83 LHKLGIHSM 91
          +  LG+   
Sbjct: 56 VLSLGVDGY 64

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A Length = 259

 Score = 37.5 bits (88), Expect = 7e-04
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 16/71 (22%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          + V+ DL+ TL         ED      P A+  L+ L+   + V         +   D+
Sbjct: 8  KAVLVDLNGTLH-------IEDA---AVPGAQEALKRLRATSVMVRFVTNTTKETKK-DL 56

Query: 79 AKTFLHKLGIH 89
           +  L KL   
Sbjct: 57 LER-LKKLEFE 66

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii} Length = 235

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 48  YLYPHAKGILEALKEKGIHVAVAS--RSPAPDIAKTFLHKLGIHSMF 92
            +    K  L+ +KE+G+  AV            +  L + G+    
Sbjct: 99  LVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEFI 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	99.81
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	99.78
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	99.78
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	99.76
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	99.76
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	99.75
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	99.74
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	99.73
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	99.73
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	99.73
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	99.71
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	99.71
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	99.71
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	99.71
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	99.7
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	99.7
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	99.7
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	99.7
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	99.7
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	99.69
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	99.69
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	99.69
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	99.69
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	99.69
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	99.68
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	99.67
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	99.67
2hsz_A	243	Novel predicted phosphatase; structural genomics,	99.67
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	99.66
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	99.66
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	99.65
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.65
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	99.65
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	99.65
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	99.65
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	99.65
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	99.64
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	99.64
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	99.64
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	99.64
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	99.63
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	99.63
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	99.63
2o2x_A	218	Hypothetical protein; structural genomics, joint c	99.63
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	99.63
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	99.63
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	99.62
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	99.62
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	99.62
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	99.61
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	99.61
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	99.61
1te2_A	226	Putative phosphatase; structural genomics, phospha	99.61
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	99.6
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	99.59
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	99.59
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	99.59
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	99.59
2zg6_A	220	Putative uncharacterized protein ST2620, probable	99.59
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	99.59
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	99.59
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	99.59
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	99.58
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.57
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	99.57
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.56
3mn1_A	189	Probable YRBI family phosphatase; structural genom	99.56
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	99.56
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	99.56
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	99.54
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	99.53
3mmz_A	176	Putative HAD family hydrolase; structural genomics	99.53
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	99.53
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	99.52
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	99.51
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.51
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	99.5
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	99.48
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	99.47
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	99.47
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	99.45
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	99.45
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	99.44
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	99.44
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	99.43
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.42
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	99.42
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	99.41
3fvv_A	232	Uncharacterized protein; unknown function, structu	99.4
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	99.39
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	99.37
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	99.37
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	99.36
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	99.35
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	99.35
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	99.32
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	99.29
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	99.29
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	99.28
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	99.28
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	99.25
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	99.25
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	99.24
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	99.23
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.22
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	99.22
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	99.22
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	99.2
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	99.2
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	99.2
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	99.2
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	99.19
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	99.19
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	99.19
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	99.17
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	99.17
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	99.17
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	99.16
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	99.15
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	99.14
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	99.14
3dao_A	283	Putative phosphatse; structural genomics, joint ce	99.12
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	99.12
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	99.12
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	99.12
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	99.11
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	99.08
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	99.06
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	99.06
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	99.05
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	99.04
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	99.04
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	99.0
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	98.97
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	98.97
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	98.92
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	98.91
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	98.88
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	98.86
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	98.82
3zx4_A	259	MPGP, mannosyl-3-phosphoglycerate phosphatase; hyd	98.8
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	98.72
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	98.72
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	98.7
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	98.58
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	98.36
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	97.54
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	98.06
4as2_A	327	Phosphorylcholine phosphatase; hydrolase, HAD supe	98.03
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	97.99
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	97.8
4fe3_A	297	Cytosolic 5'-nucleotidase 3; substrate complex, HA	97.77
1y8a_A	332	Hypothetical protein AF1437; structural genomics,	97.75
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	97.62
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	97.31
2jc9_A	555	Cytosolic purine 5'-nucleotidase; cytosolic 5-prim	97.28
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	97.25
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	96.96
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	95.8
4gxt_A	385	A conserved functionally unknown protein; structur	95.77
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	95.57
4g63_A	470	Cytosolic IMP-GMP specific 5'-nucleotidase; struct	94.86
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	94.85
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	94.8
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	94.79
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	94.75
2kln_A	130	Probable sulphate-transport transmembrane protein;	94.52
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	94.36
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	94.25
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	93.37
3dao_A	283	Putative phosphatse; structural genomics, joint ce	92.46
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	92.0
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	91.3
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	90.89
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	90.83
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	88.94
2ka5_A	125	Putative anti-sigma factor antagonist TM_1081; ter	87.2
3llo_A	143	Prestin; STAS domain, cell shape, glycoprotein, me	86.52
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	85.55
1sbo_A	110	Putative anti-sigma factor antagonist TM1442; open	85.45
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	85.1
3heb_A	152	Response regulator receiver domain protein (CHEY);	83.83
3jte_A	143	Response regulator receiver protein; structural ge	83.65
3ny7_A	118	YCHM protein, sulfate transporter; fatty acid bios	83.6
3l86_A	279	Acetylglutamate kinase; ARGB, amino-acid biosynthe	83.38
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	82.33
1th8_B	116	Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA,	81.44
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	82.07
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	80.43
3t6o_A	121	Sulfate transporter/antisigma-factor antagonist S;	80.2

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=99.81  E-value=9.6e-20  Score=131.78  Aligned_cols=82  Identities=20%  Similarity=0.198  Sum_probs=76.4

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++++.|+++|++++++||.+... +...++.+++..+|+.++++++.+..||+|+++..+++++|+.|+++.
T Consensus        83 ~~~~pg~~~~l~~L~~~g~~~~i~tn~~~~~-~~~~l~~~~l~~~fd~~~~~~~~~~~KP~p~~~~~a~~~lg~~p~e~l  161 (216)
T 3kbb_A           83 LKENPGVREALEFVKSKRIKLALATSTPQRE-ALERLRRLDLEKYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVPEKVV  161 (216)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCGGGCSEEECGGGSSSCTTSTHHHHHHHHHHTCCGGGEE
T ss_pred             cccCccHHHHHHHHHHcCCCcccccCCcHHH-HHHHHHhcCCCccccccccccccCCCcccHHHHHHHHHhhCCCccceE
Confidence            3589999999999999999999999999887 799999999999999999999999999999999999999999999986


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      +|+
T Consensus       162 ~Vg  164 (216)
T 3kbb_A          162 VFE  164 (216)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=99.78  E-value=1.3e-18  Score=123.03  Aligned_cols=105  Identities=9%  Similarity=0.003  Sum_probs=82.3

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC---------------hhHHHHHHHHc
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKL   86 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~---------------~~~~~~~l~~l   86 (156)
                      +|+++||+||||++.........+..+++|++.++|+.|+++|++++|+||++.               .. +...++.+
T Consensus         1 ~k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~-~~~~l~~~   79 (179)
T 3l8h_A            1 MKLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDK-MHRALAQM   79 (179)
T ss_dssp             CCEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHH-HHHHHHHT
T ss_pred             CCEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHH-HHHHHHhC
Confidence            478999999999974221122233457999999999999999999999999986               44 57778888


Q ss_pred             CCCCCCceEE----E-ecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           87 GIHSMFVPMV----V-IYMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        87 ~l~~~f~~~~----~-~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      |  .+|+.++    . +++....||+|.++..+++++++.|+++.+|+
T Consensus        80 g--~~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vG  125 (179)
T 3l8h_A           80 G--GVVDAIFMCPHGPDDGCACRKPLPGMYRDIARRYDVDLAGVPAVG  125 (179)
T ss_dssp             T--CCCCEEEEECCCTTSCCSSSTTSSHHHHHHHHHHTCCCTTCEEEE
T ss_pred             C--CceeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHEEEEC
Confidence            8  3444433    2 35677899999999999999999999987655

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=99.78  E-value=4e-18  Score=121.95  Aligned_cols=107  Identities=18%  Similarity=0.121  Sum_probs=89.2

Q ss_pred             CceEEEecCCcccccccc-----ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC---hhHHHHHHHHcCCCCCCc
Q 031610           22 PRLVVFDLDYTLWPFYCE-----CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---PDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~-----~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~---~~~~~~~l~~l~l~~~f~   93 (156)
                      +|+|+||+||||++....     .........++||+.++|+.|+++|++++|+||++.   .. +...++.+|+..+|+
T Consensus         3 ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~-~~~~l~~~gl~~~fd   81 (189)
T 3ib6_A            3 LTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEV-IKRVLTNFGIIDYFD   81 (189)
T ss_dssp             CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHH-HHHHHHHTTCGGGEE
T ss_pred             ceEEEEcCCCceeeccchhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHH-HHHHHHhcCchhheE
Confidence            689999999999763111     011122347999999999999999999999999986   66 689999999999999


Q ss_pred             eEEEeccc----CCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           94 PMVVIYMY----TKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        94 ~~~~~~~~----~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      .++++++.    +..||+|.++..+++++++.|+++..|+
T Consensus        82 ~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~VG  121 (189)
T 3ib6_A           82 FIYASNSELQPGKMEKPDKTIFDFTLNALQIDKTEAVMVG  121 (189)
T ss_dssp             EEEECCTTSSTTCCCTTSHHHHHHHHHHHTCCGGGEEEEE
T ss_pred             EEEEccccccccCCCCcCHHHHHHHHHHcCCCcccEEEEC
Confidence            99988765    7889999999999999999999876554

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=99.76  E-value=3e-18  Score=127.32  Aligned_cols=80  Identities=18%  Similarity=0.224  Sum_probs=71.9

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++++.|+++|++++++|++.  . +...++.+|+..+|+.++++++.+..||+|+++..+++++|+.|+++.
T Consensus       115 ~~~~p~~~~ll~~Lk~~g~~i~i~~~~~--~-~~~~L~~~gl~~~Fd~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~e~l  191 (250)
T 4gib_A          115 NDILPGIESLLIDVKSNNIKIGLSSASK--N-AINVLNHLGISDKFDFIADAGKCKNNKPHPEIFLMSAKGLNVNPQNCI  191 (250)
T ss_dssp             GGSCTTHHHHHHHHHHTTCEEEECCSCT--T-HHHHHHHHTCGGGCSEECCGGGCCSCTTSSHHHHHHHHHHTCCGGGEE
T ss_pred             cccchhHHHHHHHHHhcccccccccccc--h-hhhHhhhcccccccceeecccccCCCCCcHHHHHHHHHHhCCChHHeE
Confidence            3589999999999999999999887764  3 477899999999999999999999999999999999999999999987


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      +|+
T Consensus       192 ~VG  194 (250)
T 4gib_A          192 GIE  194 (250)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            654

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=99.76  E-value=1.5e-18  Score=116.93  Aligned_cols=97  Identities=10%  Similarity=0.076  Sum_probs=86.7

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEeccc
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMY  101 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~  101 (156)
                      +|+|+||+||||++      .    ..++|++.++|+.|+++|++++++||++... +...++.+++..+|+.++++++.
T Consensus         2 ~k~i~~D~DgtL~~------~----~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~i~~~~~~   70 (137)
T 2pr7_A            2 MRGLIVDYAGVLDG------T----DEDQRRWRNLLAAAKKNGVGTVILSNDPGGL-GAAPIRELETNGVVDKVLLSGEL   70 (137)
T ss_dssp             CCEEEECSTTTTSS------C----HHHHHHHHHHHHHHHHTTCEEEEEECSCCGG-GGHHHHHHHHTTSSSEEEEHHHH
T ss_pred             CcEEEEeccceecC------C----CccCccHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHCChHhhccEEEEeccC
Confidence            58999999999965      1    2588999999999999999999999999887 68889999999999999988888


Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610          102 TKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus       102 ~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      ...||+|..+..+++++++.|+++..|+
T Consensus        71 ~~~Kp~~~~~~~~~~~~~~~~~~~~~vg   98 (137)
T 2pr7_A           71 GVEKPEEAAFQAAADAIDLPMRDCVLVD   98 (137)
T ss_dssp             SCCTTSHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CCCCCCHHHHHHHHHHcCCCcccEEEEc
Confidence            8899999999999999999998876543

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=99.75  E-value=5.7e-18  Score=125.43  Aligned_cols=79  Identities=22%  Similarity=0.262  Sum_probs=72.3

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++||+.++++.|+++|++++++||+..   ....++.+|+..+|+.++++++.+..||+|++|..+++++|+.|++|+.
T Consensus        95 ~~~pg~~~ll~~L~~~g~~i~i~t~~~~---~~~~l~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~e~l~  171 (243)
T 4g9b_A           95 AVLPGIRSLLADLRAQQISVGLASVSLN---APTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIG  171 (243)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEECCCCTT---HHHHHHHTTCGGGCSEECCGGGCSSCTTSTHHHHHHHHHHTSCGGGEEE
T ss_pred             cccccHHHHHHhhhcccccceecccccc---hhhhhhhhhhccccccccccccccCCCCcHHHHHHHHHHcCCChHHEEE
Confidence            5889999999999999999999998763   4677899999999999999999999999999999999999999999876


Q ss_pred             Ee
Q 031610          128 IF  129 (156)
Q Consensus       128 v~  129 (156)
                      |+
T Consensus       172 Vg  173 (243)
T 4g9b_A          172 IE  173 (243)
T ss_dssp             EE
T ss_pred             Ec
Confidence            54

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=99.74  E-value=9.6e-18  Score=121.11  Aligned_cols=105  Identities=17%  Similarity=0.124  Sum_probs=80.0

Q ss_pred             CCCCceEEEecCCcccccccccccc----CCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYE----DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~----~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~   94 (156)
                      ...+|+|+||+||||++........    .....++||+.++|+.|+++|++++|+||++... +.+.+   +  .+|+.
T Consensus         3 ~~~~kav~fDlDGTL~d~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~~~i~T~~~~~~-~~~~~---~--~~~d~   76 (196)
T 2oda_A            3 LPTFPALLFGLSGCLVDFGAQAATSDTPDDEHAQLTPGAQNALKALRDQGMPCAWIDELPEAL-STPLA---A--PVNDW   76 (196)
T ss_dssp             --CCSCEEEETBTTTBCTTSTTTSCSSCCGGGGSBCTTHHHHHHHHHHHTCCEEEECCSCHHH-HHHHH---T--TTTTT
T ss_pred             CCcCCEEEEcCCCceEeccccccchhhcccccCCcCcCHHHHHHHHHHCCCEEEEEcCChHHH-HHHhc---C--ccCCE
Confidence            3467999999999999832211100    1123689999999999999999999999998665 43333   3  46788


Q ss_pred             EEEecccCCCCCCHHHHHHHHHHhCCCC-cCceeEe
Q 031610           95 MVVIYMYTKDSSNASSSESTCAIFHFHP-KRSCSIF  129 (156)
Q Consensus        95 ~~~~~~~~~~kp~p~~~~~~~~~~~~~~-~~~~~v~  129 (156)
                      ++++++....||+|+++..+++++++.+ +++.+|+
T Consensus        77 v~~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~v~VG  112 (196)
T 2oda_A           77 MIAAPRPTAGWPQPDACWMALMALNVSQLEGCVLIS  112 (196)
T ss_dssp             CEECCCCSSCTTSTHHHHHHHHHTTCSCSTTCEEEE
T ss_pred             EEECCcCCCCCCChHHHHHHHHHcCCCCCccEEEEe
Confidence            8888888899999999999999999976 6665543

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=99.73  E-value=1.8e-17  Score=118.29  Aligned_cols=90  Identities=16%  Similarity=0.184  Sum_probs=79.6

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++|++.++|+.|+++|++++++||+.... +...++.+++..+|+.++++++.+..||+|..+..+++.+++.|+++..
T Consensus        89 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~  167 (214)
T 3e58_A           89 LIFPDVLKVLNEVKSQGLEIGLASSSVKAD-IFRALEENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQASRALI  167 (214)
T ss_dssp             HBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEEGGGCSSCTTSSHHHHHHHHHHTCCGGGEEE
T ss_pred             CcCchHHHHHHHHHHCCCCEEEEeCCcHHH-HHHHHHHcCcHhheeeEeecccccCCCCChHHHHHHHHHcCCChHHeEE
Confidence            589999999999999999999999999877 7999999999999999999999999999999999999999999999876


Q ss_pred             EeeehhhhHHHh
Q 031610          128 IFMFQQVMIEMF  139 (156)
Q Consensus       128 v~~~~~~~~~~~  139 (156)
                      |+ -+.+++.+.
T Consensus       168 iG-D~~~Di~~a  178 (214)
T 3e58_A          168 IE-DSEKGIAAG  178 (214)
T ss_dssp             EE-CSHHHHHHH
T ss_pred             Ee-ccHhhHHHH
Confidence            55 234455554

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=99.73  E-value=4.9e-17  Score=118.32  Aligned_cols=109  Identities=11%  Similarity=-0.012  Sum_probs=83.9

Q ss_pred             cCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC---------------hhHHHH
Q 031610           17 QFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKT   81 (156)
Q Consensus        17 ~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~---------------~~~~~~   81 (156)
                      .+..++|+++||+||||++... .....+...++|++.++|+.|+++|++++|+||++.               .. +..
T Consensus        20 ~m~~~~k~v~~D~DGTL~~~~~-~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~-~~~   97 (211)
T 2gmw_A           20 HMAKSVPAIFLDRDGTINVDHG-YVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEW-MDW   97 (211)
T ss_dssp             ----CBCEEEECSBTTTBCCCS-SCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHH-HHH
T ss_pred             hhhhcCCEEEEcCCCCeECCCC-cccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHH-HHH
Confidence            3455689999999999997431 111122346899999999999999999999999993               55 688


Q ss_pred             HHHHcCCCCCCceEEEe------------cccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           82 FLHKLGIHSMFVPMVVI------------YMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        82 ~l~~l~l~~~f~~~~~~------------~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      .++.+|+.  |+.++.+            ++....||+|.++..+++++++.|+++++|+
T Consensus        98 ~l~~~gl~--f~~~~~~~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~lgi~~~~~~~VG  155 (211)
T 2gmw_A           98 SLADRDVD--LDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVG  155 (211)
T ss_dssp             HHHHTTCC--CSEEEEECCBTTCSSGGGBSCCSSSTTSCHHHHHHHHHHTBCGGGCEEEE
T ss_pred             HHHHcCCc--eEEEEECCcCCCCcccccCccCcCCCCCHHHHHHHHHHcCCCHHHEEEEc
Confidence            89999987  6665532            2456789999999999999999999986554

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=99.73  E-value=1.4e-17  Score=120.50  Aligned_cols=88  Identities=15%  Similarity=0.183  Sum_probs=75.1

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|++ |++++++||++... +...++.+|+..+|+.+++++  +..||+|+++..+++++|+.|+++.
T Consensus        83 ~~~~~g~~~~l~~L~~-~~~l~i~T~~~~~~-~~~~l~~~gl~~~f~~i~~~~--~~~Kp~p~~~~~~~~~lg~~p~~~~  158 (210)
T 2ah5_A           83 AQLFPQIIDLLEELSS-SYPLYITTTKDTST-AQDMAKNLEIHHFFDGIYGSS--PEAPHKADVIHQALQTHQLAPEQAI  158 (210)
T ss_dssp             CEECTTHHHHHHHHHT-TSCEEEEEEEEHHH-HHHHHHHTTCGGGCSEEEEEC--SSCCSHHHHHHHHHHHTTCCGGGEE
T ss_pred             CCCCCCHHHHHHHHHc-CCeEEEEeCCCHHH-HHHHHHhcCchhheeeeecCC--CCCCCChHHHHHHHHHcCCCcccEE
Confidence            3578999999999999 99999999998777 688899999999999988776  7789999999999999999999987


Q ss_pred             eEeeehhhhHHHh
Q 031610          127 SIFMFQQVMIEMF  139 (156)
Q Consensus       127 ~v~~~~~~~~~~~  139 (156)
                      +|+ -+.+++.+.
T Consensus       159 ~vg-Ds~~Di~~a  170 (210)
T 2ah5_A          159 IIG-DTKFDMLGA  170 (210)
T ss_dssp             EEE-SSHHHHHHH
T ss_pred             EEC-CCHHHHHHH
Confidence            655 233444444

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=99.71  E-value=3.5e-17  Score=118.44  Aligned_cols=93  Identities=17%  Similarity=0.171  Sum_probs=80.8

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|+++|++++++||+.... +...++.+++..+|+.+++++.....||+|..+..+++.+|+.|+++.
T Consensus        85 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~i  163 (226)
T 3mc1_A           85 NKVYDGIEALLSSLKDYGFHLVVATSKPTVF-SKQILEHFKLAFYFDAIVGSSLDGKLSTKEDVIRYAMESLNIKSDDAI  163 (226)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEEEEEHHH-HHHHHHHTTCGGGCSEEEEECTTSSSCSHHHHHHHHHHHHTCCGGGEE
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhCCHhheeeeeccCCCCCCCCCHHHHHHHHHHhCcCcccEE
Confidence            3689999999999999999999999998777 699999999999999999999999999999999999999999999876


Q ss_pred             eEeeehhhhHHHhhc
Q 031610          127 SIFMFQQVMIEMFQN  141 (156)
Q Consensus       127 ~v~~~~~~~~~~~~~  141 (156)
                      .|+ -+.+++.|..+
T Consensus       164 ~iG-D~~~Di~~a~~  177 (226)
T 3mc1_A          164 MIG-DREYDVIGALK  177 (226)
T ss_dssp             EEE-SSHHHHHHHHT
T ss_pred             EEC-CCHHHHHHHHH
Confidence            554 33456655543

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=99.71  E-value=3.4e-17  Score=119.48  Aligned_cols=93  Identities=16%  Similarity=0.129  Sum_probs=80.8

Q ss_pred             CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ...++|++.++|+.|+++|++++++||..... +...++.+++..+|+.++++++....||+|..+..+++++|+.|+++
T Consensus       102 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lg~~~~~~  180 (237)
T 4ex6_A          102 PRLLYPGVLEGLDRLSAAGFRLAMATSKVEKA-ARAIAELTGLDTRLTVIAGDDSVERGKPHPDMALHVARGLGIPPERC  180 (237)
T ss_dssp             GGGBCTTHHHHHHHHHHTTEEEEEECSSCHHH-HHHHHHHHTGGGTCSEEECTTTSSSCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             CCccCCCHHHHHHHHHhCCCcEEEEcCCChHH-HHHHHHHcCchhheeeEEeCCCCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence            34689999999999999999999999999877 69999999999999999999999999999999999999999999998


Q ss_pred             eeEeeehhhhHHHhh
Q 031610          126 CSIFMFQQVMIEMFQ  140 (156)
Q Consensus       126 ~~v~~~~~~~~~~~~  140 (156)
                      .+|+ -+.+++.|..
T Consensus       181 i~vG-D~~~Di~~a~  194 (237)
T 4ex6_A          181 VVIG-DGVPDAEMGR  194 (237)
T ss_dssp             EEEE-SSHHHHHHHH
T ss_pred             EEEc-CCHHHHHHHH
Confidence            6655 2334555553

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=99.71  E-value=4.3e-17  Score=116.32  Aligned_cols=104  Identities=29%  Similarity=0.431  Sum_probs=83.9

Q ss_pred             CCCceEEEecCCcccccccccc---------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC-ChhHHHHHH
Q 031610           20 NLPRLVVFDLDYTLWPFYCECC---------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSP-APDIAKTFL   83 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~---------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~-~~~~~~~~l   83 (156)
                      .++|+|+||+|||||+.+....               .......++|++.++|+.|+++|++++|+||++ ... +...+
T Consensus        25 ~~~k~vifDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~-~~~~l  103 (187)
T 2wm8_A           25 RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEG-ANQLL  103 (187)
T ss_dssp             TSCSEEEECSBTTTBSSCTTTSSCSCCEECTTSCEECTTCCEECCCTTHHHHHHHHHHHTCCEEEEECCSCHHH-HHHHH
T ss_pred             hccCEEEEcCCCCcchHHHhhccCcchhhhcccchhhccCcccCcchhHHHHHHHHHHCCceEEEEeCCCChHH-HHHHH
Confidence            4689999999999996533210               112234689999999999999999999999998 476 79999


Q ss_pred             HHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           84 HKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        84 ~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      +.+++..+|+.+++.     .+|+|..+..+++++++.|+++..|+
T Consensus       104 ~~~gl~~~f~~~~~~-----~~~k~~~~~~~~~~~~~~~~~~~~ig  144 (187)
T 2wm8_A          104 ELFDLFRYFVHREIY-----PGSKITHFERLQQKTGIPFSQMIFFD  144 (187)
T ss_dssp             HHTTCTTTEEEEEES-----SSCHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             HHcCcHhhcceeEEE-----eCchHHHHHHHHHHcCCChHHEEEEe
Confidence            999999999887543     26789999999999999999876443

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=99.71  E-value=1.6e-16  Score=116.25  Aligned_cols=90  Identities=17%  Similarity=0.133  Sum_probs=75.7

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC--ceEEEecccCCCCCCHHHHHHHHHHhCCCCcC
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF--VPMVVIYMYTKDSSNASSSESTCAIFHFHPKR  124 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f--~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~  124 (156)
                      ..++|++.++|+.|+++|++++++||..... +...++. ++..+|  +.++++++....||+|..+..+++.+|+.|++
T Consensus       107 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~-~l~~~f~~~~~~~~~~~~~~kp~~~~~~~~~~~lg~~~~~  184 (247)
T 3dv9_A          107 AERMPGALEVLTKIKSEGLTPMVVTGSGQTS-LLDRLNH-NFPGIFQANLMVTAFDVKYGKPNPEPYLMALKKGGFKPNE  184 (247)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSCC----CHHHHHH-HSTTTCCGGGEECGGGCSSCTTSSHHHHHHHHHHTCCGGG
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEcCCchHH-HHHHHHh-hHHHhcCCCeEEecccCCCCCCCCHHHHHHHHHcCCChhh
Confidence            4688999999999999999999999998777 5888888 999999  88998888999999999999999999999999


Q ss_pred             ceeEeeehhhhHHHh
Q 031610          125 SCSIFMFQQVMIEMF  139 (156)
Q Consensus       125 ~~~v~~~~~~~~~~~  139 (156)
                      +..|+ -+.+++.+.
T Consensus       185 ~i~vG-D~~~Di~~a  198 (247)
T 3dv9_A          185 ALVIE-NAPLGVQAG  198 (247)
T ss_dssp             EEEEE-CSHHHHHHH
T ss_pred             eEEEe-CCHHHHHHH
Confidence            87655 233455554

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=99.70  E-value=9e-17  Score=117.80  Aligned_cols=90  Identities=17%  Similarity=0.164  Sum_probs=78.2

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++|++.++|+.|+++|++++++||++... +...++.+|+..+|+.++++++.+..||+|..+..+++.+++.|+++..
T Consensus       105 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~  183 (240)
T 2no4_A          105 SAYPDAAETLEKLKSAGYIVAILSNGNDEM-LQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCF  183 (240)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEEGGGTTCCTTSHHHHHHHHHHHTCCGGGEEE
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHhcCcHHHcCEEEEccccCCCCCCHHHHHHHHHHcCCCcccEEE
Confidence            467999999999999999999999999777 6889999999999999999888999999999999999999999998876


Q ss_pred             EeeehhhhHHHh
Q 031610          128 IFMFQQVMIEMF  139 (156)
Q Consensus       128 v~~~~~~~~~~~  139 (156)
                      |+ -+.+++.+.
T Consensus       184 iG-D~~~Di~~a  194 (240)
T 2no4_A          184 VS-SNAWDLGGA  194 (240)
T ss_dssp             EE-SCHHHHHHH
T ss_pred             Ee-CCHHHHHHH
Confidence            54 223345444

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=99.70  E-value=1.9e-16  Score=114.76  Aligned_cols=91  Identities=10%  Similarity=0.086  Sum_probs=79.9

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|+++|++++++||.+... +...++.+++..+|+.++++++.+..||+|..+..+++.+++.|+++.
T Consensus        95 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~  173 (230)
T 3um9_A           95 LTPFADVPQALQQLRAAGLKTAILSNGSRHS-IRQVVGNSGLTNSFDHLISVDEVRLFKPHQKVYELAMDTLHLGESEIL  173 (230)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHHTCGGGCSEEEEGGGTTCCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred             CCCCCCHHHHHHHHHhCCCeEEEEeCCCHHH-HHHHHHHCCChhhcceeEehhhcccCCCChHHHHHHHHHhCCCcccEE
Confidence            4689999999999999999999999999777 688999999999999999999999999999999999999999999987


Q ss_pred             eEeeehhhhHHHh
Q 031610          127 SIFMFQQVMIEMF  139 (156)
Q Consensus       127 ~v~~~~~~~~~~~  139 (156)
                      .|+ -+.+++.+.
T Consensus       174 ~iG-D~~~Di~~a  185 (230)
T 3um9_A          174 FVS-CNSWDATGA  185 (230)
T ss_dssp             EEE-SCHHHHHHH
T ss_pred             EEe-CCHHHHHHH
Confidence            665 233455555

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=99.70  E-value=9.4e-17  Score=116.96  Aligned_cols=92  Identities=24%  Similarity=0.214  Sum_probs=79.0

Q ss_pred             CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ...++|++.++|+.|+++|++++++||++... +...++.+++..+|+.++++++....||+|..+..+++++++.|+++
T Consensus        81 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  159 (222)
T 2nyv_A           81 YTKPYPEIPYTLEALKSKGFKLAVVSNKLEEL-SKKILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKA  159 (222)
T ss_dssp             SCEECTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCGGGCSEEECTTSSCTTCCTTHHHHHHHHHHTCCGGGE
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCHHHheEEEecCcCCCCCCChHHHHHHHHHhCCCchhE
Confidence            35689999999999999999999999998776 68899999999999999988888889999999999999999999987


Q ss_pred             eeEeeehhhhHHHh
Q 031610          126 CSIFMFQQVMIEMF  139 (156)
Q Consensus       126 ~~v~~~~~~~~~~~  139 (156)
                      ..|+ -+.+++.+.
T Consensus       160 ~~vG-D~~~Di~~a  172 (222)
T 2nyv_A          160 LIVG-DTDADIEAG  172 (222)
T ss_dssp             EEEE-SSHHHHHHH
T ss_pred             EEEC-CCHHHHHHH
Confidence            6554 224444444

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=99.70  E-value=1.4e-16  Score=116.02  Aligned_cols=90  Identities=10%  Similarity=0.077  Sum_probs=77.9

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++|++.++|+.|+++|++++++||++... +...++.+++..+|+.++++++.+..||+|..+..+++.+++.|+++..
T Consensus        95 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~  173 (232)
T 1zrn_A           95 APFSEVPDSLRELKRRGLKLAILSNGSPQS-IDAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAILF  173 (232)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEESGGGTCCTTSHHHHHHHHHHHTSCGGGEEE
T ss_pred             CCCccHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHhcChHhhhheEEEecccCCCCCCHHHHHHHHHHcCCCcccEEE
Confidence            578999999999999999999999999777 6889999999999999999888889999999999999999999998766


Q ss_pred             EeeehhhhHHHh
Q 031610          128 IFMFQQVMIEMF  139 (156)
Q Consensus       128 v~~~~~~~~~~~  139 (156)
                      |+ -+.+++.+.
T Consensus       174 iG-D~~~Di~~a  184 (232)
T 1zrn_A          174 VA-SNAWDATGA  184 (232)
T ss_dssp             EE-SCHHHHHHH
T ss_pred             Ee-CCHHHHHHH
Confidence            54 223345444

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=99.69  E-value=1.2e-16  Score=115.92  Aligned_cols=91  Identities=12%  Similarity=-0.011  Sum_probs=79.8

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|+++|++++++||..... +...++.+++..+|+.++++++....||+|..+..+++.+++.|+++.
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~i  168 (233)
T 3s6j_A           90 IIALPGAVELLETLDKENLKWCIATSGGIDT-ATINLKALKLDINKINIVTRDDVSYGKPDPDLFLAAAKKIGAPIDECL  168 (233)
T ss_dssp             CEECTTHHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHTTTCCTTSSCEECGGGSSCCTTSTHHHHHHHHHTTCCGGGEE
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEeCCchhh-HHHHHHhcchhhhhheeeccccCCCCCCChHHHHHHHHHhCCCHHHEE
Confidence            4689999999999999999999999999777 699999999999999999998899999999999999999999999876


Q ss_pred             eEeeehhhhHHHh
Q 031610          127 SIFMFQQVMIEMF  139 (156)
Q Consensus       127 ~v~~~~~~~~~~~  139 (156)
                      .|+ -+.+++.+.
T Consensus       169 ~iG-D~~~Di~~a  180 (233)
T 3s6j_A          169 VIG-DAIWDMLAA  180 (233)
T ss_dssp             EEE-SSHHHHHHH
T ss_pred             EEe-CCHHhHHHH
Confidence            655 233455554

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=99.69  E-value=1e-16  Score=117.35  Aligned_cols=92  Identities=17%  Similarity=0.138  Sum_probs=80.2

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCC-CcCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFH-PKRS  125 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~-~~~~  125 (156)
                      ..++|++.++|+.|+++|++++++||+.... +...++.+++..+|+.++++++.+..||+|..+..+++.+++. |+++
T Consensus       109 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~g~~~~~~~  187 (240)
T 3sd7_A          109 NKIYENMKEILEMLYKNGKILLVATSKPTVF-AETILRYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVKDKDKV  187 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCGGGCSEEEEECTTSCCCCHHHHHHHHHHHHTCCCGGGE
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCcHHH-HHHHHHHcCcHhhEEEEEeccccCCCCCCHHHHHHHHHHcCCCCCCcE
Confidence            4689999999999999999999999998777 7999999999999999999999999999999999999999999 9887


Q ss_pred             eeEeeehhhhHHHhh
Q 031610          126 CSIFMFQQVMIEMFQ  140 (156)
Q Consensus       126 ~~v~~~~~~~~~~~~  140 (156)
                      ..|+ -+.+++.+..
T Consensus       188 i~vG-D~~~Di~~a~  201 (240)
T 3sd7_A          188 IMVG-DRKYDIIGAK  201 (240)
T ss_dssp             EEEE-SSHHHHHHHH
T ss_pred             EEEC-CCHHHHHHHH
Confidence            6655 3334555543

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=99.69  E-value=3.2e-17  Score=116.31  Aligned_cols=107  Identities=14%  Similarity=0.038  Sum_probs=81.5

Q ss_pred             CCCceEEEecCCccccccc--cccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCC---------------CChhHHHHH
Q 031610           20 NLPRLVVFDLDYTLWPFYC--ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---------------PAPDIAKTF   82 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~--~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~---------------~~~~~~~~~   82 (156)
                      +.+|+++||+||||+....  ......+...++|++.++|+.|+++|++++|+||+               .... +...
T Consensus        12 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~-~~~~   90 (176)
T 2fpr_A           12 SSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNL-MMQI   90 (176)
T ss_dssp             -CCEEEEECSBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHH-HHHH
T ss_pred             CcCcEEEEeCCCCeEcCCCCCcCcCCHHHCcCCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHH-HHHH
Confidence            4689999999999987410  01122233579999999999999999999999998               3445 6888


Q ss_pred             HHHcCCCCCCceEEEe-----cccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           83 LHKLGIHSMFVPMVVI-----YMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        83 l~~l~l~~~f~~~~~~-----~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      ++.+++.  |+.++.+     ++....||+|.++..+++++++.|+++.+|+
T Consensus        91 l~~~gl~--fd~v~~s~~~~~~~~~~~KP~p~~~~~~~~~~gi~~~~~l~VG  140 (176)
T 2fpr_A           91 FTSQGVQ--FDEVLICPHLPADECDCRKPKVKLVERYLAEQAMDRANSYVIG  140 (176)
T ss_dssp             HHHTTCC--EEEEEEECCCGGGCCSSSTTSCGGGGGGC----CCGGGCEEEE
T ss_pred             HHHcCCC--eeEEEEcCCCCcccccccCCCHHHHHHHHHHcCCCHHHEEEEc
Confidence            9999987  7777654     6778899999999999999999999876554

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=99.69  E-value=1.4e-16  Score=115.81  Aligned_cols=93  Identities=15%  Similarity=0.074  Sum_probs=79.9

Q ss_pred             CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCc-C
Q 031610           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPK-R  124 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~-~  124 (156)
                      ...++|++.++|+.|+++|++++++||+.... +...++.+++..+|+.++++++.+..||+|..+..+++++++.|+ +
T Consensus       101 ~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~  179 (231)
T 3kzx_A          101 NFMLNDGAIELLDTLKENNITMAIVSNKNGER-LRSEIHHKNLTHYFDSIIGSGDTGTIKPSPEPVLAALTNINIEPSKE  179 (231)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCGGGCSEEEEETSSSCCTTSSHHHHHHHHHHTCCCSTT
T ss_pred             cceECcCHHHHHHHHHHCCCeEEEEECCCHHH-HHHHHHHCCchhheeeEEcccccCCCCCChHHHHHHHHHcCCCcccC
Confidence            34689999999999999999999999998777 799999999999999999999999999999999999999999998 6


Q ss_pred             ceeEeeehhhhHHHhh
Q 031610          125 SCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       125 ~~~v~~~~~~~~~~~~  140 (156)
                      +..|+ -+.+++.+..
T Consensus       180 ~v~vG-D~~~Di~~a~  194 (231)
T 3kzx_A          180 VFFIG-DSISDIQSAI  194 (231)
T ss_dssp             EEEEE-SSHHHHHHHH
T ss_pred             EEEEc-CCHHHHHHHH
Confidence            65443 3334555553

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=99.69  E-value=7.9e-17  Score=115.60  Aligned_cols=116  Identities=15%  Similarity=0.113  Sum_probs=92.2

Q ss_pred             CCceEEEecCCcccccccccc--------------------------------------ccCCCcccCCcHHHHHHHHHH
Q 031610           21 LPRLVVFDLDYTLWPFYCECC--------------------------------------YEDEIPYLYPHAKGILEALKE   62 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~--------------------------------------~~~~~~~l~~~~~~~L~~L~~   62 (156)
                      ++|+|+||+||||++....+.                                      .......++|++.++|+.|++
T Consensus         5 ~~k~iifDlDGTL~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~   84 (205)
T 3m9l_A            5 EIKHWVFDMDGTLTIAVHDFAAIREALSIPAEDDILTHLAALPADESAAKHAWLLEHERDLAQGSRPAPGAVELVRELAG   84 (205)
T ss_dssp             GCCEEEECTBTTTEEEEECHHHHHHHTTCCTTSCHHHHHHHSCHHHHHHHHHHHHHTHHHHEEEEEECTTHHHHHHHHHH
T ss_pred             cCCEEEEeCCCcCcccHHHHHHHHHHhCCCchHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHh
Confidence            579999999999998422210                                      001223689999999999999


Q ss_pred             CCCeEEEEcCCCChhHHHHHHHHcCCCCCC--ceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610           63 KGIHVAVASRSPAPDIAKTFLHKLGIHSMF--VPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        63 ~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f--~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                      +|++++++||+.... +...++.+++..+|  +.+++.+. ...||+|..+..+++.+|+.|+++..|+ -+.+++.+.
T Consensus        85 ~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~i~~~~~-~~~kp~~~~~~~~~~~~g~~~~~~i~iG-D~~~Di~~a  160 (205)
T 3m9l_A           85 RGYRLGILTRNAREL-AHVTLEAIGLADCFAEADVLGRDE-APPKPHPGGLLKLAEAWDVSPSRMVMVG-DYRFDLDCG  160 (205)
T ss_dssp             TTCEEEEECSSCHHH-HHHHHHHTTCGGGSCGGGEECTTT-SCCTTSSHHHHHHHHHTTCCGGGEEEEE-SSHHHHHHH
T ss_pred             cCCeEEEEeCCchHH-HHHHHHHcCchhhcCcceEEeCCC-CCCCCCHHHHHHHHHHcCCCHHHEEEEC-CCHHHHHHH
Confidence            999999999999877 79999999999999  66766554 7899999999999999999999886655 233455554

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=99.68  E-value=1.9e-16  Score=116.28  Aligned_cols=90  Identities=17%  Similarity=0.091  Sum_probs=78.0

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC--ceEEEecccCCCCCCHHHHHHHHHHhCCCCcC
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF--VPMVVIYMYTKDSSNASSSESTCAIFHFHPKR  124 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f--~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~  124 (156)
                      ..++|++.++|+.|+++|++++++||..... +...++. ++..+|  +.++++++....||+|..+..+++.+++.|++
T Consensus       108 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~-~l~~~f~~d~i~~~~~~~~~kp~~~~~~~~~~~lg~~~~~  185 (243)
T 3qxg_A          108 AERMPGAWELLQKVKSEGLTPMVVTGSGQLS-LLERLEH-NFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADE  185 (243)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECCCCCHH-HHTTHHH-HSTTTCCGGGEECTTTCSSCTTSSHHHHHHHHHTTCCGGG
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEeCCcHHH-HHHHHHH-hHHHhcCcceEEeHHhCCCCCCChHHHHHHHHHcCCCHHH
Confidence            4689999999999999999999999999877 6888888 999999  88998888999999999999999999999999


Q ss_pred             ceeEeeehhhhHHHh
Q 031610          125 SCSIFMFQQVMIEMF  139 (156)
Q Consensus       125 ~~~v~~~~~~~~~~~  139 (156)
                      +..|+ -+.+++.+.
T Consensus       186 ~i~vG-D~~~Di~~a  199 (243)
T 3qxg_A          186 AVVIE-NAPLGVEAG  199 (243)
T ss_dssp             EEEEE-CSHHHHHHH
T ss_pred             eEEEe-CCHHHHHHH
Confidence            87655 233455554

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=99.67  E-value=2.9e-16  Score=115.50  Aligned_cols=91  Identities=13%  Similarity=0.156  Sum_probs=78.1

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++|++++++||++... +...++.+++. +|+.++++++....||+|.++..+++++|+.|+++.
T Consensus       109 ~~~~~g~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~-~f~~~~~~~~~~~~Kp~p~~~~~~~~~l~~~~~~~~  186 (240)
T 2hi0_A          109 TGPFPGILDLMKNLRQKGVKLAVVSNKPNEA-VQVLVEELFPG-SFDFALGEKSGIRRKPAPDMTSECVKVLGVPRDKCV  186 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHSTT-TCSEEEEECTTSCCTTSSHHHHHHHHHHTCCGGGEE
T ss_pred             CCcCCCHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCc-ceeEEEecCCCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence            3478999999999999999999999998776 68899999998 999999888888999999999999999999999987


Q ss_pred             eEeeehhhhHHHhh
Q 031610          127 SIFMFQQVMIEMFQ  140 (156)
Q Consensus       127 ~v~~~~~~~~~~~~  140 (156)
                      +|+ -+.+++.+..
T Consensus       187 ~vG-Ds~~Di~~a~  199 (240)
T 2hi0_A          187 YIG-DSEIDIQTAR  199 (240)
T ss_dssp             EEE-SSHHHHHHHH
T ss_pred             EEc-CCHHHHHHHH
Confidence            665 2344555543

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=99.67  E-value=2.7e-16  Score=114.26  Aligned_cols=91  Identities=10%  Similarity=0.072  Sum_probs=79.6

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|+++|++++++||.+... +...++.+++..+|+.++++++.+..||+|..+..+++.++++|+++.
T Consensus        98 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~  176 (233)
T 3umb_A           98 LSAFPENVPVLRQLREMGLPLGILSNGNPQM-LEIAVKSAGMSGLFDHVLSVDAVRLYKTAPAAYALAPRAFGVPAAQIL  176 (233)
T ss_dssp             CEECTTHHHHHHHHHTTTCCEEEEESSCHHH-HHHHHHTTTCTTTCSEEEEGGGTTCCTTSHHHHTHHHHHHTSCGGGEE
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHH-HHHHHHHCCcHhhcCEEEEecccCCCCcCHHHHHHHHHHhCCCcccEE
Confidence            3578999999999999999999999999777 688999999999999999999999999999999999999999999987


Q ss_pred             eEeeehhhhHHHh
Q 031610          127 SIFMFQQVMIEMF  139 (156)
Q Consensus       127 ~v~~~~~~~~~~~  139 (156)
                      .|+ -+.+++.+.
T Consensus       177 ~vG-D~~~Di~~a  188 (233)
T 3umb_A          177 FVS-SNGWDACGA  188 (233)
T ss_dssp             EEE-SCHHHHHHH
T ss_pred             EEe-CCHHHHHHH
Confidence            665 234455444

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=99.67  E-value=5.1e-16  Score=114.61  Aligned_cols=91  Identities=26%  Similarity=0.314  Sum_probs=78.3

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|+++|++++++||+.... +...++.+|+..+|+.++++++....||+|..+..+++++++.|+++.
T Consensus       113 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~  191 (243)
T 2hsz_A          113 SRLYPNVKETLEALKAQGYILAVVTNKPTKH-VQPILTAFGIDHLFSEMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQIL  191 (243)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCGGGCSEEECTTTSSSCTTSSHHHHHHHHHHTCCGGGEE
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEECCcHHH-HHHHHHHcCchheEEEEEecccCCCCCcCHHHHHHHHHHhCcChhhEE
Confidence            3578999999999999999999999998776 689999999999999998888888899999999999999999999876


Q ss_pred             eEeeehhhhHHHh
Q 031610          127 SIFMFQQVMIEMF  139 (156)
Q Consensus       127 ~v~~~~~~~~~~~  139 (156)
                      .|+ -+.+++.+.
T Consensus       192 ~vG-D~~~Di~~a  203 (243)
T 2hsz_A          192 FVG-DSQNDIFAA  203 (243)
T ss_dssp             EEE-SSHHHHHHH
T ss_pred             EEc-CCHHHHHHH
Confidence            554 233455554

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=99.66  E-value=8.7e-16  Score=115.36  Aligned_cols=91  Identities=14%  Similarity=0.006  Sum_probs=76.5

Q ss_pred             cccCCcHHHHHHHHHHCCC--eEEEEcCCCChhHHHHHHHHcCCCCCCceEEEeccc----CCCCCCHHHHHHHHHHhCC
Q 031610           47 PYLYPHAKGILEALKEKGI--HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMY----TKDSSNASSSESTCAIFHF  120 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~--~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~----~~~kp~p~~~~~~~~~~~~  120 (156)
                      ..++|++.++|+.|+++|+  +++++||+.... +...++.+|+..+|+.+++++..    ...||+|..+..+++.+|+
T Consensus       141 ~~~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~-~~~~l~~~gl~~~fd~v~~~~~~~~~~~~~Kp~~~~~~~~~~~lgi  219 (282)
T 3nuq_A          141 LKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNH-AIRCLRLLGIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGL  219 (282)
T ss_dssp             CCCCHHHHHHHHHHHHSSSCSEEEEECSSCHHH-HHHHHHHHTCTTSCSEEECCCCSSCSSCCCTTSHHHHHHHHHHHTC
T ss_pred             cCcChhHHHHHHHHHhCCCCceEEEEECCChHH-HHHHHHhCCcccccceEEEeccCCCcccCCCcCHHHHHHHHHHcCC
Confidence            4689999999999999999  999999999877 68999999999999998876543    5569999999999999999


Q ss_pred             CC-cCceeEeeehhhhHHHh
Q 031610          121 HP-KRSCSIFMFQQVMIEMF  139 (156)
Q Consensus       121 ~~-~~~~~v~~~~~~~~~~~  139 (156)
                      .| +++..|+ -+.+++.+.
T Consensus       220 ~~~~~~i~vG-D~~~Di~~a  238 (282)
T 3nuq_A          220 ARYENAYFID-DSGKNIETG  238 (282)
T ss_dssp             CCGGGEEEEE-SCHHHHHHH
T ss_pred             CCcccEEEEc-CCHHHHHHH
Confidence            98 8876655 233455444

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=99.66  E-value=9.7e-16  Score=113.42  Aligned_cols=88  Identities=13%  Similarity=0.109  Sum_probs=76.3

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++|++.++|+.|+  |++++++||++... +...++.+++..+|+.++++++.+..||+|..+..+++++++.|+++..
T Consensus        93 ~~~~~~~~~l~~l~--g~~~~i~t~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~  169 (253)
T 1qq5_A           93 TPYPDAAQCLAELA--PLKRAILSNGAPDM-LQALVANAGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVLF  169 (253)
T ss_dssp             CBCTTHHHHHHHHT--TSEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEEGGGGTCCTTSHHHHHHHHHHHCCCGGGEEE
T ss_pred             CCCccHHHHHHHHc--CCCEEEEeCcCHHH-HHHHHHHCCchhhccEEEEccccCCCCCCHHHHHHHHHHcCCCHHHEEE
Confidence            57899999999998  99999999999877 6889999999999999999988899999999999999999999998876


Q ss_pred             EeeehhhhHHHh
Q 031610          128 IFMFQQVMIEMF  139 (156)
Q Consensus       128 v~~~~~~~~~~~  139 (156)
                      |+ -+.+++.+.
T Consensus       170 vG-D~~~Di~~a  180 (253)
T 1qq5_A          170 VS-SNGFDVGGA  180 (253)
T ss_dssp             EE-SCHHHHHHH
T ss_pred             Ee-CChhhHHHH
Confidence            54 233345444

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=99.65  E-value=3.1e-16  Score=117.27  Aligned_cols=80  Identities=13%  Similarity=0.191  Sum_probs=72.9

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++||+.++|+.|++ +++++|+||++... +...++.+|+..+|+.++++++.+..||+|+++..+++++++.|+++.+
T Consensus       121 ~~~~g~~~~L~~L~~-~~~l~i~Tn~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~  198 (260)
T 2gfh_A          121 ILADDVKAMLTELRK-EVRLLLLTNGDRQT-QREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCVM  198 (260)
T ss_dssp             CCCHHHHHHHHHHHT-TSEEEEEECSCHHH-HHHHHHHHTCGGGCSEEEEGGGSSSCTTCHHHHHHHHHHHTCCGGGEEE
T ss_pred             CCCcCHHHHHHHHHc-CCcEEEEECcChHH-HHHHHHhcCHHhhhheEEecCCCCCCCCCHHHHHHHHHHcCCChhhEEE
Confidence            578999999999987 59999999999877 6889999999999999999988889999999999999999999998765


Q ss_pred             Ee
Q 031610          128 IF  129 (156)
Q Consensus       128 v~  129 (156)
                      |+
T Consensus       199 vG  200 (260)
T 2gfh_A          199 VG  200 (260)
T ss_dssp             EE
T ss_pred             EC
Confidence            54

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.65  E-value=7e-16  Score=123.00  Aligned_cols=109  Identities=17%  Similarity=0.184  Sum_probs=85.8

Q ss_pred             CCCCCceEEEecCCcccccccc--c-cccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC------------ChhHHHHH
Q 031610           18 FENLPRLVVFDLDYTLWPFYCE--C-CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP------------APDIAKTF   82 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~--~-~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~------------~~~~~~~~   82 (156)
                      ...++|+++||+||||++....  . ....+...++||+.++|+.|+++|++++|+||++            ... +...
T Consensus        54 ~~~~~k~v~fD~DGTL~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~-~~~~  132 (416)
T 3zvl_A           54 VKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGK-VEAV  132 (416)
T ss_dssp             CCCCSSEEEECSBTTTEECSSCSSSCSSTTCCEESCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHH-HHHH
T ss_pred             CCCCCeEEEEeCCCCccccCCCccCCCCHHHhhhhcccHHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHH-HHHH
Confidence            3446899999999999864210  0 0111122479999999999999999999999976            122 4677


Q ss_pred             HHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhC----CCCcCceeEe
Q 031610           83 LHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH----FHPKRSCSIF  129 (156)
Q Consensus        83 l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~----~~~~~~~~v~  129 (156)
                      ++.+|+.  |+.++++++....||+|.++..+++.++    +.|+++++|+
T Consensus       133 l~~lgl~--fd~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~v~~~~~l~VG  181 (416)
T 3zvl_A          133 LEKLGVP--FQVLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVG  181 (416)
T ss_dssp             HHHHTSC--CEEEEECSSSTTSTTSSHHHHHHHHHSSTTCCCCGGGCEEEC
T ss_pred             HHHcCCC--EEEEEECCCCCCCCCCHHHHHHHHHHhCCCCCCCHHHeEEEE
Confidence            8889984  8888898899999999999999999997    8999987665

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=99.65  E-value=3.9e-16  Score=114.56  Aligned_cols=91  Identities=13%  Similarity=0.109  Sum_probs=77.6

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++|++.++|+.|+++|++++++||+.... +...++.+++..+|+.++++++.+..||+|..+..+++.+|+.|+++..
T Consensus        94 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~g~~~~~~i~  172 (241)
T 2hoq_A           94 REVPGARKVLIRLKELGYELGIITDGNPVK-QWEKILRLELDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVKPEEALM  172 (241)
T ss_dssp             CBCTTHHHHHHHHHHHTCEEEEEECSCHHH-HHHHHHHTTCGGGCSEEEEGGGGTCCTTCHHHHHHHHHHHTCCGGGEEE
T ss_pred             CCCccHHHHHHHHHHCCCEEEEEECCCchh-HHHHHHHcCcHhhccEEEEeCCCCCCCCCHHHHHHHHHHcCCCcccEEE
Confidence            478999999999999999999999998776 6889999999999999999888899999999999999999999998765


Q ss_pred             EeeehhhhHHHh
Q 031610          128 IFMFQQVMIEMF  139 (156)
Q Consensus       128 v~~~~~~~~~~~  139 (156)
                      |+=...+++.+.
T Consensus       173 iGD~~~~Di~~a  184 (241)
T 2hoq_A          173 VGDRLYSDIYGA  184 (241)
T ss_dssp             EESCTTTTHHHH
T ss_pred             ECCCchHhHHHH
Confidence            442111445554

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=99.65  E-value=3.7e-16  Score=111.00  Aligned_cols=110  Identities=18%  Similarity=0.111  Sum_probs=84.5

Q ss_pred             CCCCceEEEecCCccccccccccccCC-CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDE-IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV   97 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~-~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~   97 (156)
                      ..++|+|+||+||||++........++ ...+.+.+.++|+.|+++|++++++||++... +...++.+++..+|..   
T Consensus         5 ~~~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~-~~~~~~~lgl~~~~~~---   80 (180)
T 1k1e_A            5 LENIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPI-LRRRIADLGIKLFFLG---   80 (180)
T ss_dssp             GGGCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHH-HHHHHHHHTCCEEEES---
T ss_pred             hhCCeEEEEeCCCCcCCCCeeeccCcceeeeeccchHHHHHHHHHCCCeEEEEeCCCcHH-HHHHHHHcCCceeecC---
Confidence            456899999999999985332211211 11356688999999999999999999999888 7999999998876532   


Q ss_pred             ecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610           98 IYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        98 ~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                            .||++..+..+++.+++.|+++.+|+ -+.+.+.+.
T Consensus        81 ------~k~k~~~~~~~~~~~~~~~~~~~~vG-D~~~Di~~~  115 (180)
T 1k1e_A           81 ------KLEKETACFDLMKQAGVTAEQTAYIG-DDSVDLPAF  115 (180)
T ss_dssp             ------CSCHHHHHHHHHHHHTCCGGGEEEEE-CSGGGHHHH
T ss_pred             ------CCCcHHHHHHHHHHcCCCHHHEEEEC-CCHHHHHHH
Confidence                  49999999999999999999876554 333455554

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=99.65  E-value=4.6e-16  Score=113.13  Aligned_cols=87  Identities=23%  Similarity=0.269  Sum_probs=68.0

Q ss_pred             cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeE
Q 031610           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSI  128 (156)
Q Consensus        49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v  128 (156)
                      ++|++.++|+.|+++|++++++||+..   +...++.+++..+|+.++++++....||+|..+..+++.+|+.|+++.+|
T Consensus        93 ~~~~~~~~l~~l~~~g~~~~i~t~~~~---~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~i~v  169 (233)
T 3nas_A           93 LLPGIGRLLCQLKNENIKIGLASSSRN---APKILRRLAIIDDFHAIVDPTTLAKGKPDPDIFLTAAAMLDVSPADCAAI  169 (233)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCTT---HHHHHHHTTCTTTCSEECCC---------CCHHHHHHHHHTSCGGGEEEE
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEcCchh---HHHHHHHcCcHhhcCEEeeHhhCCCCCCChHHHHHHHHHcCCCHHHEEEE
Confidence            799999999999999999999999853   48889999999999999888888889999999999999999999998766


Q ss_pred             eeehhhhHHHh
Q 031610          129 FMFQQVMIEMF  139 (156)
Q Consensus       129 ~~~~~~~~~~~  139 (156)
                      + -+.+++.|.
T Consensus       170 G-Ds~~Di~~a  179 (233)
T 3nas_A          170 E-DAEAGISAI  179 (233)
T ss_dssp             E-CSHHHHHHH
T ss_pred             e-CCHHHHHHH
Confidence            5 334556555

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=99.64  E-value=4.3e-16  Score=108.44  Aligned_cols=99  Identities=17%  Similarity=0.112  Sum_probs=77.6

Q ss_pred             CCceEEEecCCccccccccccccC-CCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEec
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYED-EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIY   99 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~-~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~   99 (156)
                      ++|+++||+||||++......... ....+.|++.++|+.|+++|++++++||++... +...++.+|+..+|..     
T Consensus         8 ~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~~~~-----   81 (162)
T 2p9j_A            8 KLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSAP-LITRLKELGVEEIYTG-----   81 (162)
T ss_dssp             HCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCHH-HHHHHHHTTCCEEEEC-----
T ss_pred             ceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcHH-HHHHHHHcCCHhhccC-----
Confidence            579999999999997433211111 112356788999999999999999999999888 7999999998776643     


Q ss_pred             ccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610          100 MYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus       100 ~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                          .||+|..+..+++.+++.|+++.+|+
T Consensus        82 ----~kp~~~~~~~~~~~~~~~~~~~~~vG  107 (162)
T 2p9j_A           82 ----SYKKLEIYEKIKEKYSLKDEEIGFIG  107 (162)
T ss_dssp             ----C--CHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             ----CCCCHHHHHHHHHHcCCCHHHEEEEC
Confidence                59999999999999999998876554

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=99.64  E-value=2.5e-16  Score=116.07  Aligned_cols=91  Identities=16%  Similarity=0.144  Sum_probs=74.4

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH-cCCCCCCceEEEec--ccCCCCCCHHHHHHHHHHhCCCC-
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSMFVPMVVIY--MYTKDSSNASSSESTCAIFHFHP-  122 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~-l~l~~~f~~~~~~~--~~~~~kp~p~~~~~~~~~~~~~~-  122 (156)
                      ..++|++.++|+.|+++|++++++||+.... +...+.. +++..+|+.+++++  +....||+|..+..+++++++.| 
T Consensus       111 ~~~~~~~~~~l~~l~~~g~~~~i~sn~~~~~-~~~~l~~~~~l~~~f~~~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~~  189 (250)
T 3l5k_A          111 AALMPGAEKLIIHLRKHGIPFALATSSRSAS-FDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPA  189 (250)
T ss_dssp             CCBCTTHHHHHHHHHHTTCCEEEECSCCHHH-HHHHTTTCHHHHTTSSCEECTTCTTCCSCTTSTHHHHHHHHTSSSCCC
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHH-HHHHHHhccCHHhheeeEEecchhhccCCCCChHHHHHHHHHcCCCCC
Confidence            4589999999999999999999999998665 4665544 57888999999888  88899999999999999999988 


Q ss_pred             -cCceeEeeehhhhHHHh
Q 031610          123 -KRSCSIFMFQQVMIEMF  139 (156)
Q Consensus       123 -~~~~~v~~~~~~~~~~~  139 (156)
                       +++..|+ -+.+++.+.
T Consensus       190 ~~~~i~iG-D~~~Di~~a  206 (250)
T 3l5k_A          190 MEKCLVFE-DAPNGVEAA  206 (250)
T ss_dssp             GGGEEEEE-SSHHHHHHH
T ss_pred             cceEEEEe-CCHHHHHHH
Confidence             7766544 233455554

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=99.64  E-value=5.1e-16  Score=111.78  Aligned_cols=92  Identities=15%  Similarity=0.102  Sum_probs=75.5

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE----------ecccCCCCCCHHHHHHHHH
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV----------IYMYTKDSSNASSSESTCA  116 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~----------~~~~~~~kp~p~~~~~~~~  116 (156)
                      ..++|++.++|+.|+++|++++++||++... +...++.+|+..+|+.++.          +......||+|..+..+++
T Consensus        74 ~~~~~~~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~  152 (217)
T 3m1y_A           74 LPLFEGALELVSALKEKNYKVVCFSGGFDLA-TNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGEMLLVLQR  152 (217)
T ss_dssp             CCBCBTHHHHHHHHHTTTEEEEEEEEEEHHH-HHHHHHHHTCSEEEEEEEEEETTEEEEEEEESCCSTTHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHCCCEEEEEcCCchhH-HHHHHHHcCcchhccceeEEeCCEEEeeeccCCCCCCChHHHHHHHHH
Confidence            4689999999999999999999999998777 6899999999999887763          2345568999999999999


Q ss_pred             HhCCCCcCceeEeeehhhhHHHhh
Q 031610          117 IFHFHPKRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~  140 (156)
                      .+++.|+++..|+ -+.+++.+..
T Consensus       153 ~~g~~~~~~i~vG-Ds~~Di~~a~  175 (217)
T 3m1y_A          153 LLNISKTNTLVVG-DGANDLSMFK  175 (217)
T ss_dssp             HHTCCSTTEEEEE-CSGGGHHHHT
T ss_pred             HcCCCHhHEEEEe-CCHHHHHHHH
Confidence            9999999976555 2334555553

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=99.64  E-value=3.2e-16  Score=116.03  Aligned_cols=92  Identities=14%  Similarity=0.008  Sum_probs=79.2

Q ss_pred             CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce-EEEecccC-CCCCCHHHHHHHHHHhCCCCc
Q 031610           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP-MVVIYMYT-KDSSNASSSESTCAIFHFHPK  123 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~-~~~~~~~~-~~kp~p~~~~~~~~~~~~~~~  123 (156)
                      ...++|++.++|+.|+++|++++++||..... +...++.+++..+|+. ++++++.+ ..||+|..+..+++.+++.|+
T Consensus       108 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~i~~~~~~~~~~Kp~~~~~~~~~~~lgi~~~  186 (259)
T 4eek_A          108 GVTAIEGAAETLRALRAAGVPFAIGSNSERGR-LHLKLRVAGLTELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGILPE  186 (259)
T ss_dssp             TCEECTTHHHHHHHHHHHTCCEEEECSSCHHH-HHHHHHHTTCHHHHCSCEECGGGGTTCCTTSSHHHHHHHHHTTCCGG
T ss_pred             cCCcCccHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHhcChHhhccceEEeHhhcCcCCCCChHHHHHHHHHcCCCHH
Confidence            35689999999999999999999999999777 7999999999999999 88888888 999999999999999999999


Q ss_pred             CceeEeeehhhhHHHh
Q 031610          124 RSCSIFMFQQVMIEMF  139 (156)
Q Consensus       124 ~~~~v~~~~~~~~~~~  139 (156)
                      ++..|+ -+.+++.+.
T Consensus       187 ~~i~iG-D~~~Di~~a  201 (259)
T 4eek_A          187 RCVVIE-DSVTGGAAG  201 (259)
T ss_dssp             GEEEEE-SSHHHHHHH
T ss_pred             HEEEEc-CCHHHHHHH
Confidence            876654 223455444

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=99.63  E-value=1.5e-15  Score=110.34  Aligned_cols=92  Identities=12%  Similarity=0.027  Sum_probs=78.8

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhC-CCCcCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH-FHPKRS  125 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~-~~~~~~  125 (156)
                      ..++|++.++|+.|+++ ++++++||+.... +...++.+++..+|+.++++++.+..||+|..+..+++.+| +.|+++
T Consensus       102 ~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~g~~~~~~~  179 (238)
T 3ed5_A          102 HQLIDGAFDLISNLQQQ-FDLYIVTNGVSHT-QYKRLRDSGLFPFFKDIFVSEDTGFQKPMKEYFNYVFERIPQFSAEHT  179 (238)
T ss_dssp             CCBCTTHHHHHHHHHTT-SEEEEEECSCHHH-HHHHHHHTTCGGGCSEEEEGGGTTSCTTCHHHHHHHHHTSTTCCGGGE
T ss_pred             CCCCccHHHHHHHHHhc-CeEEEEeCCCHHH-HHHHHHHcChHhhhheEEEecccCCCCCChHHHHHHHHHcCCCChhHe
Confidence            46899999999999999 9999999998777 68899999999999999999999999999999999999999 999998


Q ss_pred             eeEeeehhhhHHHhh
Q 031610          126 CSIFMFQQVMIEMFQ  140 (156)
Q Consensus       126 ~~v~~~~~~~~~~~~  140 (156)
                      ..|+=--.+++.+..
T Consensus       180 i~vGD~~~~Di~~a~  194 (238)
T 3ed5_A          180 LIIGDSLTADIKGGQ  194 (238)
T ss_dssp             EEEESCTTTTHHHHH
T ss_pred             EEECCCcHHHHHHHH
Confidence            665522224555553

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=99.63  E-value=1.1e-15  Score=113.54  Aligned_cols=91  Identities=12%  Similarity=-0.041  Sum_probs=78.5

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC-CceEEEecccCCCCCCHHHHHHHHHHhCCCC-cCc
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM-FVPMVVIYMYTKDSSNASSSESTCAIFHFHP-KRS  125 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~-f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~-~~~  125 (156)
                      .++|++.++|+.|+++|++++++||.+... +...++.+++..+ |+.++++++....||+|..+..+++.+|+.| +++
T Consensus       111 ~~~~~~~~~l~~l~~~g~~~~i~tn~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~  189 (277)
T 3iru_A          111 QLIPGWKEVFDKLIAQGIKVGGNTGYGPGM-MAPALIAAKEQGYTPASTVFATDVVRGRPFPDMALKVALELEVGHVNGC  189 (277)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHHHTTCCCSEEECGGGSSSCTTSSHHHHHHHHHHTCSCGGGE
T ss_pred             ccCcCHHHHHHHHHHcCCeEEEEeCCchHH-HHHHHHhcCcccCCCceEecHHhcCCCCCCHHHHHHHHHHcCCCCCccE
Confidence            688999999999999999999999999777 6888999998888 8888888888989999999999999999999 887


Q ss_pred             eeEeeehhhhHHHhh
Q 031610          126 CSIFMFQQVMIEMFQ  140 (156)
Q Consensus       126 ~~v~~~~~~~~~~~~  140 (156)
                      .+|+ -+.+++.+..
T Consensus       190 i~vG-D~~~Di~~a~  203 (277)
T 3iru_A          190 IKVD-DTLPGIEEGL  203 (277)
T ss_dssp             EEEE-SSHHHHHHHH
T ss_pred             EEEc-CCHHHHHHHH
Confidence            6655 3345555553

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=99.63  E-value=7.1e-16  Score=109.95  Aligned_cols=80  Identities=6%  Similarity=0.058  Sum_probs=72.5

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++|++.++|+.|+++| +++++||++... +...++.+++..+|+.++++++.+..||+|..+..+++.+++.|+++..
T Consensus        86 ~~~~~~~~~l~~l~~~g-~~~i~s~~~~~~-~~~~l~~~~~~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~  163 (200)
T 3cnh_A           86 QPRPEVLALARDLGQRY-RMYSLNNEGRDL-NEYRIRTFGLGEFLLAFFTSSALGVMKPNPAMYRLGLTLAQVRPEEAVM  163 (200)
T ss_dssp             CBCHHHHHHHHHHTTTS-EEEEEECCCHHH-HHHHHHHHTGGGTCSCEEEHHHHSCCTTCHHHHHHHHHHHTCCGGGEEE
T ss_pred             ccCccHHHHHHHHHHcC-CEEEEeCCcHHH-HHHHHHhCCHHHhcceEEeecccCCCCCCHHHHHHHHHHcCCCHHHeEE
Confidence            47899999999999999 999999999777 6888999999999999998888888999999999999999999988765


Q ss_pred             Ee
Q 031610          128 IF  129 (156)
Q Consensus       128 v~  129 (156)
                      |+
T Consensus       164 vg  165 (200)
T 3cnh_A          164 VD  165 (200)
T ss_dssp             EE
T ss_pred             eC
Confidence            44

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=99.63  E-value=1.4e-15  Score=110.90  Aligned_cols=107  Identities=13%  Similarity=0.014  Sum_probs=83.9

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC---------------hhHHHHHH
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFL   83 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~---------------~~~~~~~l   83 (156)
                      .+++++++||+||||++.... ........++|++.++|+.|+++|++++|+||++.               .. +...+
T Consensus        28 ~~~~k~i~~D~DGtl~~~~~y-~~~~~~~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~-~~~~l  105 (218)
T 2o2x_A           28 PPHLPALFLDRDGTINVDTDY-PSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGR-VLELL  105 (218)
T ss_dssp             CSSCCCEEECSBTTTBCCCSC-TTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHH-HHHHH
T ss_pred             hhcCCEEEEeCCCCcCCCCcc-cCCcccCeECcCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHH-HHHHH
Confidence            456899999999999974110 01122246899999999999999999999999986               45 68888


Q ss_pred             HHcCCCCCCceEE-Ee-----------cccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           84 HKLGIHSMFVPMV-VI-----------YMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        84 ~~l~l~~~f~~~~-~~-----------~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      +.+|+.  |+.++ +.           ++....||+|.++..+++++++.|+++++|+
T Consensus       106 ~~~gl~--~~~~~~~~~~~~g~~~~~~~~~~~~KP~~~~~~~~~~~~~i~~~~~~~VG  161 (218)
T 2o2x_A          106 REEGVF--VDMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRLALDLQRSLIVG  161 (218)
T ss_dssp             HHTTCC--CSEEEEECCCTTCCSTTCCSSCTTSTTSCHHHHHHHHHHTCCGGGCEEEE
T ss_pred             HHcCCc--eeeEEEeecCCCCceeecccCCccCCCCHHHHHHHHHHcCCCHHHEEEEe
Confidence            999875  55433 32           4567789999999999999999999987655

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=99.63  E-value=5.2e-16  Score=111.37  Aligned_cols=90  Identities=9%  Similarity=0.053  Sum_probs=77.6

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|+++ ++++++||++... +...++.+++..+|+.++++++.+..||+|..+..+++.+++.|+++.
T Consensus        82 ~~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~i  159 (209)
T 2hdo_A           82 IELYPGITSLFEQLPSE-LRLGIVTSQRRNE-LESGMRSYPFMMRMAVTISADDTPKRKPDPLPLLTALEKVNVAPQNAL  159 (209)
T ss_dssp             CEECTTHHHHHHHSCTT-SEEEEECSSCHHH-HHHHHTTSGGGGGEEEEECGGGSSCCTTSSHHHHHHHHHTTCCGGGEE
T ss_pred             CCcCCCHHHHHHHHHhc-CcEEEEeCCCHHH-HHHHHHHcChHhhccEEEecCcCCCCCCCcHHHHHHHHHcCCCcccEE
Confidence            46899999999999999 9999999998776 688999999999999988888888999999999999999999999876


Q ss_pred             eEeeehhhhHHHh
Q 031610          127 SIFMFQQVMIEMF  139 (156)
Q Consensus       127 ~v~~~~~~~~~~~  139 (156)
                      .|+ -+.+++.+.
T Consensus       160 ~vG-D~~~Di~~a  171 (209)
T 2hdo_A          160 FIG-DSVSDEQTA  171 (209)
T ss_dssp             EEE-SSHHHHHHH
T ss_pred             EEC-CChhhHHHH
Confidence            555 234455554

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=99.63  E-value=2e-15  Score=112.61  Aligned_cols=91  Identities=13%  Similarity=0.061  Sum_probs=77.3

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|+++|++++++||... . +...++.+|+..+|+.++++++.+..||+|..+..+++.+++.|+++.
T Consensus       105 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~-~-~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~g~~~~~~~  182 (263)
T 3k1z_A          105 WQVLDGAEDTLRECRTRGLRLAVISNFDR-R-LEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLAHMEPVVAA  182 (263)
T ss_dssp             EEECTTHHHHHHHHHHTTCEEEEEESCCT-T-HHHHHHHTTCGGGCSCEEEHHHHSSCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred             ceECcCHHHHHHHHHhCCCcEEEEeCCcH-H-HHHHHHhCCcHHhhhEEEeecccCCCCCCHHHHHHHHHHcCCCHHHEE
Confidence            36899999999999999999999999775 4 588999999999999999998889999999999999999999999876


Q ss_pred             eEeeehhhhHHHh
Q 031610          127 SIFMFQQVMIEMF  139 (156)
Q Consensus       127 ~v~~~~~~~~~~~  139 (156)
                      +|+=--.+.+.+.
T Consensus       183 ~vGD~~~~Di~~a  195 (263)
T 3k1z_A          183 HVGDNYLCDYQGP  195 (263)
T ss_dssp             EEESCHHHHTHHH
T ss_pred             EECCCcHHHHHHH
Confidence            5542112445444

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=99.62  E-value=4.4e-16  Score=111.75  Aligned_cols=80  Identities=11%  Similarity=0.022  Sum_probs=71.4

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH------cCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK------LGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFH  121 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~------l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~  121 (156)
                      .++|++.++|+.|++ |++++++||++... +...++.      +++..+|+.++++++.+..||+|..+..+++++++.
T Consensus        89 ~~~~~~~~~l~~l~~-g~~~~i~t~~~~~~-~~~~~~~l~~~~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  166 (211)
T 2i6x_A           89 EISAEKFDYIDSLRP-DYRLFLLSNTNPYV-LDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPNEDIFLEMIADSGMK  166 (211)
T ss_dssp             EECHHHHHHHHHHTT-TSEEEEEECCCHHH-HHHHTSTTSSTTCCCGGGGSSEEEEHHHHTCCTTSHHHHHHHHHHHCCC
T ss_pred             ccChHHHHHHHHHHc-CCeEEEEeCCCHHH-HHHHHhhhccccccCHHHHcCeEEeecccCCCCCCHHHHHHHHHHhCCC
Confidence            578999999999999 99999999998776 6777887      799999999998888889999999999999999999


Q ss_pred             CcCceeEe
Q 031610          122 PKRSCSIF  129 (156)
Q Consensus       122 ~~~~~~v~  129 (156)
                      |+++..|+
T Consensus       167 ~~~~~~ig  174 (211)
T 2i6x_A          167 PEETLFID  174 (211)
T ss_dssp             GGGEEEEC
T ss_pred             hHHeEEeC
Confidence            99876544

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=99.62  E-value=2.3e-15  Score=109.32  Aligned_cols=91  Identities=15%  Similarity=0.055  Sum_probs=78.8

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|+ +|++++++||.+... ....++.+++..+|+.++++++.+..||+|..+..+++.+|+.|+++.
T Consensus       106 ~~~~~~~~~~l~~l~-~g~~~~i~sn~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~  183 (240)
T 3qnm_A          106 SGLMPHAKEVLEYLA-PQYNLYILSNGFREL-QSRKMRSAGVDRYFKKIILSEDLGVLKPRPEIFHFALSATQSELRESL  183 (240)
T ss_dssp             CCBSTTHHHHHHHHT-TTSEEEEEECSCHHH-HHHHHHHHTCGGGCSEEEEGGGTTCCTTSHHHHHHHHHHTTCCGGGEE
T ss_pred             CCcCccHHHHHHHHH-cCCeEEEEeCCchHH-HHHHHHHcChHhhceeEEEeccCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence            468999999999999 999999999998777 688999999999999999999999999999999999999999999886


Q ss_pred             eEeeeh-hhhHHHhh
Q 031610          127 SIFMFQ-QVMIEMFQ  140 (156)
Q Consensus       127 ~v~~~~-~~~~~~~~  140 (156)
                      .|+ -+ .+++.+.+
T Consensus       184 ~iG-D~~~~Di~~a~  197 (240)
T 3qnm_A          184 MIG-DSWEADITGAH  197 (240)
T ss_dssp             EEE-SCTTTTHHHHH
T ss_pred             EEC-CCchHhHHHHH
Confidence            654 23 35555553

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=99.62  E-value=2.7e-15  Score=107.84  Aligned_cols=90  Identities=17%  Similarity=0.210  Sum_probs=76.4

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|++.|++++++|+.  .. ....++.+++..+|+.++++++.+..||+|..+..+++.+|+.|+++.
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~--~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~i  166 (221)
T 2wf7_A           90 ADVYPGILQLLKDLRSNKIKIALASAS--KN-GPFLLERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESI  166 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCCC--TT-HHHHHHHTTCGGGCSEECCTTTSSSCTTSSHHHHHHHHHTTCCGGGEE
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEcCc--HH-HHHHHHHcChHHHcceEeccccCCCCCCChHHHHHHHHHcCCChhHeE
Confidence            357899999999999999999999998  34 578889999999999988888889999999999999999999999876


Q ss_pred             eEeeehhhhHHHhh
Q 031610          127 SIFMFQQVMIEMFQ  140 (156)
Q Consensus       127 ~v~~~~~~~~~~~~  140 (156)
                      .++ -+.+++.|..
T Consensus       167 ~iG-D~~nDi~~a~  179 (221)
T 2wf7_A          167 GLE-DSQAGIQAIK  179 (221)
T ss_dssp             EEE-SSHHHHHHHH
T ss_pred             EEe-CCHHHHHHHH
Confidence            654 3345666553

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=99.61  E-value=1.2e-15  Score=110.74  Aligned_cols=93  Identities=20%  Similarity=0.146  Sum_probs=79.4

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|+++ ++++++||++... +...++.+++..+|+.++++++.+..||+|..+..+++.+|+.|+++.
T Consensus        99 ~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~  176 (234)
T 3u26_A           99 GELYPEVVEVLKSLKGK-YHVGMITDSDTEQ-AMAFLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAV  176 (234)
T ss_dssp             CCBCTTHHHHHHHHTTT-SEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEEHHHHTBCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred             CCcCcCHHHHHHHHHhC-CcEEEEECCCHHH-HHHHHHHcCcHHHcceeEeccccCCCCcCHHHHHHHHHHcCCCchhEE
Confidence            35889999999999999 9999999999877 689999999999999999988888899999999999999999999876


Q ss_pred             eEeeehhhhHHHhhc
Q 031610          127 SIFMFQQVMIEMFQN  141 (156)
Q Consensus       127 ~v~~~~~~~~~~~~~  141 (156)
                      .|+=.-.+++.|..+
T Consensus       177 ~vGD~~~~Di~~a~~  191 (234)
T 3u26_A          177 YVGDNPVKDCGGSKN  191 (234)
T ss_dssp             EEESCTTTTHHHHHT
T ss_pred             EEcCCcHHHHHHHHH
Confidence            554222255666643

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=99.61  E-value=3e-15  Score=106.99  Aligned_cols=77  Identities=14%  Similarity=0.108  Sum_probs=69.4

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++|++.+ |+.|+++ ++++++||++... +...++.+|+..+|+.++++++.+..||+|..+..++++++  |+++..
T Consensus        74 ~~~~~~~~-l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~--~~~~~~  148 (201)
T 2w43_A           74 KAYEDTKY-LKEISEI-AEVYALSNGSINE-VKQHLERNGLLRYFKGIFSAESVKEYKPSPKVYKYFLDSIG--AKEAFL  148 (201)
T ss_dssp             EECGGGGG-HHHHHHH-SEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEEGGGGTCCTTCHHHHHHHHHHHT--CSCCEE
T ss_pred             ccCCChHH-HHHHHhC-CeEEEEeCcCHHH-HHHHHHHCCcHHhCcEEEehhhcCCCCCCHHHHHHHHHhcC--CCcEEE
Confidence            57899999 9999999 9999999998777 68899999999999999998888899999999999999999  777655


Q ss_pred             Ee
Q 031610          128 IF  129 (156)
Q Consensus       128 v~  129 (156)
                      |+
T Consensus       149 vG  150 (201)
T 2w43_A          149 VS  150 (201)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=99.61  E-value=9.6e-16  Score=111.77  Aligned_cols=80  Identities=15%  Similarity=0.076  Sum_probs=69.6

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH------HHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL------HKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFH  121 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l------~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~  121 (156)
                      .++|++.++|+.|+++ ++++++||.+... ....+      +.+++..+|+.++++++.+..||+|..+..+++++|+.
T Consensus       112 ~~~~~~~~~l~~l~~~-~~~~i~Sn~~~~~-~~~~~~~l~~~~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~g~~  189 (229)
T 4dcc_A          112 DIPTYKLDLLLKLREK-YVVYLLSNTNDIH-WKWVCKNAFPYRTFKVEDYFEKTYLSYEMKMAKPEPEIFKAVTEDAGID  189 (229)
T ss_dssp             CCCHHHHHHHHHHTTT-SEEEEEECCCHHH-HHHHHHHTSCBTTBCHHHHCSEEEEHHHHTCCTTCHHHHHHHHHHHTCC
T ss_pred             hccHHHHHHHHHHHhc-CcEEEEECCChHH-HHHHHhhhhhhccCCHHHhCCEEEeecccCCCCCCHHHHHHHHHHcCCC
Confidence            3679999999999998 9999999999776 56444      67788889999999888999999999999999999999


Q ss_pred             CcCceeEe
Q 031610          122 PKRSCSIF  129 (156)
Q Consensus       122 ~~~~~~v~  129 (156)
                      |+++..|+
T Consensus       190 ~~~~~~vG  197 (229)
T 4dcc_A          190 PKETFFID  197 (229)
T ss_dssp             GGGEEEEC
T ss_pred             HHHeEEEC
Confidence            99876543

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=99.61  E-value=4.2e-15  Score=106.87  Aligned_cols=91  Identities=15%  Similarity=0.128  Sum_probs=78.8

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++|++.++|+.|++.|++++++|+..... +...++.+++..+|+.++++++.+..||+|..+..+++.++++++++..
T Consensus        94 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~i~~~~~i~  172 (226)
T 1te2_A           94 PLLPGVREAVALCKEQGLLVGLASASPLHM-LEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVA  172 (226)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEECTTSSCCTTSTHHHHHHHHHHTSCGGGEEE
T ss_pred             CcCccHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHhcCcHhhCcEEEeccccCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence            578999999999999999999999998776 6888999999999999988888888999999999999999999998766


Q ss_pred             EeeehhhhHHHhh
Q 031610          128 IFMFQQVMIEMFQ  140 (156)
Q Consensus       128 v~~~~~~~~~~~~  140 (156)
                      ++ -+.+++.|..
T Consensus       173 iG-D~~nDi~~a~  184 (226)
T 1te2_A          173 LE-DSVNGMIASK  184 (226)
T ss_dssp             EE-SSHHHHHHHH
T ss_pred             Ee-CCHHHHHHHH
Confidence            54 3345666664

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=99.60  E-value=2.8e-15  Score=112.36  Aligned_cols=80  Identities=9%  Similarity=0.055  Sum_probs=70.3

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc---CCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPK  123 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l---~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~  123 (156)
                      ..++|++.++|+.|+++|++++|+||++... +...++.+   ++..+|+.++++ +.+ .||+|.+|..+++++++.|+
T Consensus       129 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~-~~~~l~~~~~~~l~~~fd~i~~~-~~~-~KP~p~~~~~~~~~lg~~p~  205 (261)
T 1yns_A          129 AEFFADVVPAVRKWREAGMKVYIYSSGSVEA-QKLLFGHSTEGDILELVDGHFDT-KIG-HKVESESYRKIADSIGCSTN  205 (261)
T ss_dssp             BCCCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHTBTTBCCGGGCSEEECG-GGC-CTTCHHHHHHHHHHHTSCGG
T ss_pred             cccCcCHHHHHHHHHhCCCeEEEEeCCCHHH-HHHHHHhhcccChHhhccEEEec-CCC-CCCCHHHHHHHHHHhCcCcc
Confidence            4588999999999999999999999999776 67778754   599999998887 778 99999999999999999999


Q ss_pred             CceeEe
Q 031610          124 RSCSIF  129 (156)
Q Consensus       124 ~~~~v~  129 (156)
                      ++++|+
T Consensus       206 ~~l~Vg  211 (261)
T 1yns_A          206 NILFLT  211 (261)
T ss_dssp             GEEEEE
T ss_pred             cEEEEc
Confidence            876544

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=99.59  E-value=7.2e-15  Score=104.00  Aligned_cols=91  Identities=16%  Similarity=0.198  Sum_probs=78.3

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|++.|++++++|+..... .. .++.+++..+|+.++++++.+..||+|..+..+++.+++.|+++.
T Consensus        84 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~-~~~~~~~~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~i~~~~~~  161 (207)
T 2go7_A           84 VVLMPGAREVLAWADESGIQQFIYTHKGNNA-FT-ILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTY  161 (207)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCTHH-HH-HHHHHTCGGGEEEEECGGGCCCCTTSSHHHHHHHHHHTCCGGGEE
T ss_pred             ceeCcCHHHHHHHHHHCCCeEEEEeCCchHH-HH-HHHHcCchhheeeEEecCcCCCCCCCcHHHHHHHHHhCCCcccEE
Confidence            3578999999999999999999999999877 67 889999999998888888888899999999999999999999876


Q ss_pred             eEeeehhhhHHHhh
Q 031610          127 SIFMFQQVMIEMFQ  140 (156)
Q Consensus       127 ~v~~~~~~~~~~~~  140 (156)
                      .++ -+.+++.|.+
T Consensus       162 ~iG-D~~nDi~~~~  174 (207)
T 2go7_A          162 YIG-DRTLDVEFAQ  174 (207)
T ss_dssp             EEE-SSHHHHHHHH
T ss_pred             EEC-CCHHHHHHHH
Confidence            554 3455666664

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=99.59  E-value=3.7e-16  Score=111.67  Aligned_cols=82  Identities=16%  Similarity=0.115  Sum_probs=70.5

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH-cCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~-l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ..++|++.++|+.|+++|++++++||++... +...+.. +|+..+|+.++++++.+..||+|..+..+++.+++.|+++
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~~~~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  168 (206)
T 2b0c_A           90 VALRPEVIAIMHKLREQGHRVVVLSNTNRLH-TTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDT  168 (206)
T ss_dssp             EEECHHHHHHHHHHHHTTCEEEEEECCCCCT-TSCCGGGCHHHHHHCSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGGGE
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEECCChHH-HHHHHHhccChhhheeeEEEecccCCCCCCHHHHHHHHHHcCCCHHHe
Confidence            4688999999999999999999999998766 4555555 6778889999888888889999999999999999999887


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      ..|+
T Consensus       169 ~~vg  172 (206)
T 2b0c_A          169 VFFD  172 (206)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            6544

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=99.59  E-value=4.7e-15  Score=103.34  Aligned_cols=109  Identities=13%  Similarity=0.033  Sum_probs=79.8

Q ss_pred             CCCceEEEecCCccccccccccccCCC-cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEe
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEI-PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI   98 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~-~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~   98 (156)
                      +++|+|+||+||||++........++. .........+|+.|+++|++++++||++... +...++.+|+..+|..    
T Consensus         2 ~~ik~vifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~~~~~gl~~~~~~----   76 (164)
T 3e8m_A            2 KEIKLILTDIDGVWTDGGMFYDQTGNEWKKFNTSDSAGIFWAHNKGIPVGILTGEKTEI-VRRRAEKLKVDYLFQG----   76 (164)
T ss_dssp             CCCCEEEECSTTTTSSSEEEECSSSCEEEEEEGGGHHHHHHHHHTTCCEEEECSSCCHH-HHHHHHHTTCSEEECS----
T ss_pred             CcceEEEEcCCCceEcCcEEEcCCCcEEEEecCChHHHHHHHHHCCCEEEEEeCCChHH-HHHHHHHcCCCEeecc----
Confidence            368999999999999853221111111 1111222337999999999999999999888 7999999999877654    


Q ss_pred             cccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610           99 YMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        99 ~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                           .||+|..+..+++.++++|+++.+|+ -+.+++.+.
T Consensus        77 -----~kpk~~~~~~~~~~~~~~~~~~~~vG-D~~~Di~~~  111 (164)
T 3e8m_A           77 -----VVDKLSAAEELCNELGINLEQVAYIG-DDLNDAKLL  111 (164)
T ss_dssp             -----CSCHHHHHHHHHHHHTCCGGGEEEEC-CSGGGHHHH
T ss_pred             -----cCChHHHHHHHHHHcCCCHHHEEEEC-CCHHHHHHH
Confidence                 39999999999999999999876554 223444444

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=99.59  E-value=6.7e-15  Score=105.73  Aligned_cols=92  Identities=16%  Similarity=0.087  Sum_probs=78.4

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++++.|++.|++++++|+..... ....++.+++..+|+.++++++....||++..+..+++.+++.++++.
T Consensus        88 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~i  166 (225)
T 3d6j_A           88 TILFPDTLPTLTHLKKQGIRIGIISTKYRFR-ILSFLRNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVL  166 (225)
T ss_dssp             CEECTTHHHHHHHHHHHTCEEEEECSSCHHH-HHHHHHTSSCTTCCSEEECGGGCSSCTTSTHHHHHHHHHTTCCGGGEE
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEECCCHHH-HHHHHHHcCchhheeeeeehhhcCCCCCChHHHHHHHHHhCCChHHeE
Confidence            3578999999999999999999999998776 688899999999999888888888889999999999999999999876


Q ss_pred             eEeeehhhhHHHhh
Q 031610          127 SIFMFQQVMIEMFQ  140 (156)
Q Consensus       127 ~v~~~~~~~~~~~~  140 (156)
                      .++ -+.+++.|..
T Consensus       167 ~iG-D~~nDi~~~~  179 (225)
T 3d6j_A          167 YIG-DSTVDAGTAA  179 (225)
T ss_dssp             EEE-SSHHHHHHHH
T ss_pred             EEc-CCHHHHHHHH
Confidence            554 3445666653

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=99.59  E-value=1.1e-15  Score=111.07  Aligned_cols=73  Identities=23%  Similarity=0.353  Sum_probs=57.5

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHP  122 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~  122 (156)
                      .++|++.++|+.|+++|++++++||++. . +...++.+|+..+|+.++++++.+..||+|.++..+++++++.|
T Consensus        95 ~~~~~~~~~l~~l~~~g~~~~i~Tn~~~-~-~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  167 (220)
T 2zg6_A           95 FLYDDTLEFLEGLKSNGYKLALVSNASP-R-VKTLLEKFDLKKYFDALALSYEIKAVKPNPKIFGFALAKVGYPA  167 (220)
T ss_dssp             EECTTHHHHHHHHHTTTCEEEECCSCHH-H-HHHHHHHHTCGGGCSEEC-----------CCHHHHHHHHHCSSE
T ss_pred             eECcCHHHHHHHHHHCCCEEEEEeCCcH-H-HHHHHHhcCcHhHeeEEEeccccCCCCCCHHHHHHHHHHcCCCe
Confidence            5789999999999999999999999975 5 68899999999999999988888889999999999999999887

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=99.59  E-value=4.1e-15  Score=107.84  Aligned_cols=88  Identities=13%  Similarity=-0.054  Sum_probs=72.6

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHH---HHHhCCCCcC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSEST---CAIFHFHPKR  124 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~---~~~~~~~~~~  124 (156)
                      .++|++.++|+.|++ |++++++||.+... ....++.  +..+|+.++++++.+..||+|..+..+   ++.+++.|++
T Consensus        99 ~~~~~~~~~l~~l~~-~~~~~i~tn~~~~~-~~~~l~~--l~~~fd~i~~~~~~~~~KP~~~~~~~~l~~~~~lgi~~~~  174 (240)
T 3smv_A           99 PAFPDTVEALQYLKK-HYKLVILSNIDRNE-FKLSNAK--LGVEFDHIITAQDVGSYKPNPNNFTYMIDALAKAGIEKKD  174 (240)
T ss_dssp             CBCTTHHHHHHHHHH-HSEEEEEESSCHHH-HHHHHTT--TCSCCSEEEEHHHHTSCTTSHHHHHHHHHHHHHTTCCGGG
T ss_pred             CCCCcHHHHHHHHHh-CCeEEEEeCCChhH-HHHHHHh--cCCccCEEEEccccCCCCCCHHHHHHHHHHHHhcCCCchh
Confidence            589999999999999 89999999999776 5777766  557899999999999999999999999   8999999999


Q ss_pred             ceeEeeehhhhHHHh
Q 031610          125 SCSIFMFQQVMIEMF  139 (156)
Q Consensus       125 ~~~v~~~~~~~~~~~  139 (156)
                      +..|+=--.+++.+.
T Consensus       175 ~~~vGD~~~~Di~~a  189 (240)
T 3smv_A          175 ILHTAESLYHDHIPA  189 (240)
T ss_dssp             EEEEESCTTTTHHHH
T ss_pred             EEEECCCchhhhHHH
Confidence            876552212555555

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=99.59  E-value=6.6e-15  Score=106.55  Aligned_cols=91  Identities=15%  Similarity=0.128  Sum_probs=77.7

Q ss_pred             cCCcHHHHHHHHHHCCCeEEEEcCCC---ChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           49 LYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        49 l~~~~~~~L~~L~~~G~~v~i~T~~~---~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ++|++.++|+.|+++|++++++||..   ... ....++.+++..+|+.++++++.+..||+|..+..+++++|+.|+++
T Consensus       100 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  178 (235)
T 2om6_A          100 VLEGTKEALQFVKERGLKTAVIGNVMFWPGSY-TRLLLERFGLMEFIDKTFFADEVLSYKPRKEMFEKVLNSFEVKPEES  178 (235)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEECCCSSCHHH-HHHHHHHTTCGGGCSEEEEHHHHTCCTTCHHHHHHHHHHTTCCGGGE
T ss_pred             cCccHHHHHHHHHHCCCEEEEEcCCcccchhH-HHHHHHhCCcHHHhhhheeccccCCCCCCHHHHHHHHHHcCCCccce
Confidence            58999999999999999999999998   776 68889999999999999988888889999999999999999999987


Q ss_pred             eeEeeehhhhHHHhh
Q 031610          126 CSIFMFQQVMIEMFQ  140 (156)
Q Consensus       126 ~~v~~~~~~~~~~~~  140 (156)
                      ..|+=...+++.|..
T Consensus       179 ~~iGD~~~nDi~~a~  193 (235)
T 2om6_A          179 LHIGDTYAEDYQGAR  193 (235)
T ss_dssp             EEEESCTTTTHHHHH
T ss_pred             EEECCChHHHHHHHH
Confidence            665422225566663

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=99.59  E-value=1.2e-14  Score=102.54  Aligned_cols=87  Identities=20%  Similarity=0.150  Sum_probs=72.6

Q ss_pred             cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeE
Q 031610           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSI  128 (156)
Q Consensus        49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v  128 (156)
                      ++|++.++|+.|+++|++++++||.+. . +...++.+++..+|+.++++++....||+|..+..+++.+++.  ++..+
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~t~~~~-~-~~~~l~~~~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~--~~~~i  158 (190)
T 2fi1_A           83 LFEGVSDLLEDISNQGGRHFLVSHRND-Q-VLEILEKTSIAAYFTEVVTSSSGFKRKPNPESMLYLREKYQIS--SGLVI  158 (190)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSCT-H-HHHHHHHTTCGGGEEEEECGGGCCCCTTSCHHHHHHHHHTTCS--SEEEE
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEECCcH-H-HHHHHHHcCCHhheeeeeeccccCCCCCCHHHHHHHHHHcCCC--eEEEE
Confidence            789999999999999999999999874 5 6888999999999999888888888999999999999999988  44333


Q ss_pred             eeehhhhHHHhh
Q 031610          129 FMFQQVMIEMFQ  140 (156)
Q Consensus       129 ~~~~~~~~~~~~  140 (156)
                      + -+.+++.+..
T Consensus       159 G-D~~~Di~~a~  169 (190)
T 2fi1_A          159 G-DRPIDIEAGQ  169 (190)
T ss_dssp             E-SSHHHHHHHH
T ss_pred             c-CCHHHHHHHH
Confidence            3 2344555553

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=9.6e-15  Score=105.35  Aligned_cols=87  Identities=21%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             cccCCcHHHHHHHHHHCC-CeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           47 PYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G-~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ..++|++.++|+.|+++| ++++++||..... +...++.+++..+|+.+++.     .||+|..+..+++.+|+.|+++
T Consensus       104 ~~~~~~~~~~l~~l~~~g~~~~~i~t~~~~~~-~~~~l~~~~~~~~f~~~~~~-----~kpk~~~~~~~~~~lgi~~~~~  177 (234)
T 3ddh_A          104 IELLPGVKETLKTLKETGKYKLVVATKGDLLD-QENKLERSGLSPYFDHIEVM-----SDKTEKEYLRLLSILQIAPSEL  177 (234)
T ss_dssp             CCBCTTHHHHHHHHHHHCCCEEEEEEESCHHH-HHHHHHHHTCGGGCSEEEEE-----SCCSHHHHHHHHHHHTCCGGGE
T ss_pred             CCcCccHHHHHHHHHhCCCeEEEEEeCCchHH-HHHHHHHhCcHhhhheeeec-----CCCCHHHHHHHHHHhCCCcceE
Confidence            368999999999999999 9999999988776 68889999999999988764     4899999999999999999998


Q ss_pred             eeEeeehhhhHHHh
Q 031610          126 CSIFMFQQVMIEMF  139 (156)
Q Consensus       126 ~~v~~~~~~~~~~~  139 (156)
                      ..|+=.-.+++.|.
T Consensus       178 i~iGD~~~~Di~~a  191 (234)
T 3ddh_A          178 LMVGNSFKSDIQPV  191 (234)
T ss_dssp             EEEESCCCCCCHHH
T ss_pred             EEECCCcHHHhHHH
Confidence            76552212445444

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=99.57  E-value=2.1e-14  Score=103.63  Aligned_cols=111  Identities=14%  Similarity=0.161  Sum_probs=83.7

Q ss_pred             CCCceEEEecCCccccccccccccC-CCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEe
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYED-EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI   98 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~-~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~   98 (156)
                      +.+|+|+||+||||+++.......+ +...+.+....+|+.|+++|++++|+||++... +..+++.+|+..+|..    
T Consensus        23 ~~ik~vifD~DGtL~d~~~~~~~~~~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~-~~~~l~~lgi~~~~~~----   97 (195)
T 3n07_A           23 KQIKLLICDVDGVFSDGLIYMGNQGEELKTFHTRDGYGVKALMNAGIEIAIITGRRSQI-VENRMKALGISLIYQG----   97 (195)
T ss_dssp             HTCCEEEECSTTTTSCSCCEECTTSCEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHH-HHHHHHHTTCCEEECS----
T ss_pred             hCCCEEEEcCCCCcCCCcEEEccCchhhheeecccHHHHHHHHHCCCEEEEEECcCHHH-HHHHHHHcCCcEEeeC----
Confidence            3579999999999998432221111 122344455567999999999999999999888 7999999999876643    


Q ss_pred             cccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhc
Q 031610           99 YMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQN  141 (156)
Q Consensus        99 ~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  141 (156)
                           .||+|..+..+++.+++.++++.+++ -+.+++.+..+
T Consensus        98 -----~k~k~~~~~~~~~~~~~~~~~~~~vG-D~~nDi~~~~~  134 (195)
T 3n07_A           98 -----QDDKVQAYYDICQKLAIAPEQTGYIG-DDLIDWPVMEK  134 (195)
T ss_dssp             -----CSSHHHHHHHHHHHHCCCGGGEEEEE-SSGGGHHHHTT
T ss_pred             -----CCCcHHHHHHHHHHhCCCHHHEEEEc-CCHHHHHHHHH
Confidence                 39999999999999999999887654 34455555543

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=99.57  E-value=3.6e-15  Score=107.11  Aligned_cols=111  Identities=13%  Similarity=0.043  Sum_probs=80.2

Q ss_pred             CCCCCceEEEecCCccccccccccccCCC-cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE
Q 031610           18 FENLPRLVVFDLDYTLWPFYCECCYEDEI-PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~-~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~   96 (156)
                      ..+.+|+|+||+||||++........++. ..+...-..+|+.|+++|++++++||++... +...++.+|+..+|..+ 
T Consensus        15 ~~~~ik~vifD~DGtL~~~~~~~~~~~~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~~~-~~~~l~~lgl~~~~~~~-   92 (191)
T 3n1u_A           15 KAKKIKCLICDVDGVLSDGLLHIDNHGNELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAV-VDHRMEQLGITHYYKGQ-   92 (191)
T ss_dssp             HHHTCSEEEECSTTTTBCSCCEECTTCCEECCBCHHHHHHHHHHHHTTCEEEEECSCCSHH-HHHHHHHHTCCEEECSC-
T ss_pred             HHhcCCEEEEeCCCCCCCCceeecCCchhhhhccccChHHHHHHHHCCCeEEEEeCcChHH-HHHHHHHcCCccceeCC-
Confidence            34568999999999999842221111110 1111111125999999999999999999888 79999999998776543 


Q ss_pred             EecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610           97 VIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        97 ~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                              ||+|..+..+++.+++.|+++.+|+ -+.+++.+.
T Consensus        93 --------kpk~~~~~~~~~~~~~~~~~~~~vG-D~~~Di~~~  126 (191)
T 3n1u_A           93 --------VDKRSAYQHLKKTLGLNDDEFAYIG-DDLPDLPLI  126 (191)
T ss_dssp             --------SSCHHHHHHHHHHHTCCGGGEEEEE-CSGGGHHHH
T ss_pred             --------CChHHHHHHHHHHhCCCHHHEEEEC-CCHHHHHHH
Confidence                    9999999999999999999886655 233455444

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=99.56  E-value=1.2e-14  Score=106.01  Aligned_cols=110  Identities=15%  Similarity=0.086  Sum_probs=81.1

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCC-cHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEe
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYP-HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI   98 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~-~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~   98 (156)
                      .++|+|+||+||||+|+.......++....+. .-..+|+.|+++|++++|+||++... +..+++.+|+..+|..+   
T Consensus        47 ~~ik~viFDlDGTL~Ds~~~~~~~~~~~~~~~~~d~~~L~~L~~~G~~l~I~T~~~~~~-~~~~l~~lgi~~~f~~~---  122 (211)
T 3ij5_A           47 ANIRLLICDVDGVMSDGLIYMGNQGEELKAFNVRDGYGIRCLITSDIDVAIITGRRAKL-LEDRANTLGITHLYQGQ---  122 (211)
T ss_dssp             TTCSEEEECCTTTTSSSEEEEETTSCEEEEEEHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHHHHHTCCEEECSC---
T ss_pred             hCCCEEEEeCCCCEECCHHHHhhhhHHHHHhccchHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCchhhccc---
Confidence            35799999999999996433222222111111 11118999999999999999999888 79999999998777543   


Q ss_pred             cccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhh
Q 031610           99 YMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus        99 ~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  140 (156)
                            ||+|..+..+++.+++.++++.+|+ -+.+++.+..
T Consensus       123 ------k~K~~~l~~~~~~lg~~~~~~~~vG-Ds~nDi~~~~  157 (211)
T 3ij5_A          123 ------SDKLVAYHELLATLQCQPEQVAYIG-DDLIDWPVMA  157 (211)
T ss_dssp             ------SSHHHHHHHHHHHHTCCGGGEEEEE-CSGGGHHHHT
T ss_pred             ------CChHHHHHHHHHHcCcCcceEEEEc-CCHHHHHHHH
Confidence                  8899999999999999999886654 3444555543

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=99.56  E-value=1.2e-14  Score=104.03  Aligned_cols=109  Identities=14%  Similarity=0.060  Sum_probs=80.5

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCC-cHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEe
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYP-HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI   98 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~-~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~   98 (156)
                      +++|+|+||+||||+++.......++....+. .-..+|+.|+++|++++|+||++... +...++.+|+..+|..+   
T Consensus        17 ~~ik~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~lgl~~~f~~~---   92 (189)
T 3mn1_A           17 KAIKLAVFDVDGVLTDGRLYFMEDGSEIKTFNTLDGQGIKMLIASGVTTAIISGRKTAI-VERRAKSLGIEHLFQGR---   92 (189)
T ss_dssp             HTCCEEEECSTTTTSCSEEEEETTSCEEEEEEHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHHHHHTCSEEECSC---
T ss_pred             HhCCEEEEcCCCCcCCccEeeccCCcEeeeeccccHHHHHHHHHCCCEEEEEECcChHH-HHHHHHHcCCHHHhcCc---
Confidence            36799999999999996433222221111111 11128999999999999999999888 79999999998877653   


Q ss_pred             cccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610           99 YMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        99 ~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                            +++|..+..+++.++++++++.+|+ -+.+++.+.
T Consensus        93 ------~~K~~~~~~~~~~~g~~~~~~~~vG-D~~nDi~~~  126 (189)
T 3mn1_A           93 ------EDKLVVLDKLLAELQLGYEQVAYLG-DDLPDLPVI  126 (189)
T ss_dssp             ------SCHHHHHHHHHHHHTCCGGGEEEEE-CSGGGHHHH
T ss_pred             ------CChHHHHHHHHHHcCCChhHEEEEC-CCHHHHHHH
Confidence                  7778999999999999999987655 334455444

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=99.56  E-value=1e-14  Score=105.65  Aligned_cols=86  Identities=12%  Similarity=0.106  Sum_probs=71.8

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|+++ ++++++||.+..      ++.+++..+|+.++++++.+..||+|..+..+++.+|+.|+++.
T Consensus       104 ~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~------l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~  176 (230)
T 3vay_A          104 VQIFPEVQPTLEILAKT-FTLGVITNGNAD------VRRLGLADYFAFALCAEDLGIGKPDPAPFLEALRRAKVDASAAV  176 (230)
T ss_dssp             CCBCTTHHHHHHHHHTT-SEEEEEESSCCC------GGGSTTGGGCSEEEEHHHHTCCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred             CccCcCHHHHHHHHHhC-CeEEEEECCchh------hhhcCcHHHeeeeEEccccCCCCcCHHHHHHHHHHhCCCchheE
Confidence            35899999999999998 999999998854      47889999999999988888999999999999999999999986


Q ss_pred             eEeeehhhhHHHh
Q 031610          127 SIFMFQQVMIEMF  139 (156)
Q Consensus       127 ~v~~~~~~~~~~~  139 (156)
                      .|+=--.+++.+.
T Consensus       177 ~vGD~~~~Di~~a  189 (230)
T 3vay_A          177 HVGDHPSDDIAGA  189 (230)
T ss_dssp             EEESCTTTTHHHH
T ss_pred             EEeCChHHHHHHH
Confidence            5542212455555

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=99.56  E-value=2.5e-15  Score=120.67  Aligned_cols=80  Identities=10%  Similarity=0.054  Sum_probs=67.6

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCC--CChhHHHHHHHHc--CCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCc
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRS--PAPDIAKTFLHKL--GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPK  123 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~--~~~~~~~~~l~~l--~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~  123 (156)
                      .++|++.++|+.|+++|++++|+||+  .... ....+...  ++..+|+.++++++.+..||+|+++..+++++|+.|+
T Consensus       100 ~~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~-~~~~~~~~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~lg~~p~  178 (555)
T 3i28_A          100 KINRPMLQAALMLRKKGFTTAILTNTWLDDRA-ERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKASPS  178 (555)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEECCCCCCST-THHHHHHHHHHHHTTSSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGG
T ss_pred             CcChhHHHHHHHHHHCCCEEEEEeCCCccccc-hhhHHHHHhhhhhhheeEEEeccccCCCCCCHHHHHHHHHHcCCChh
Confidence            58899999999999999999999998  2222 23334444  7788999999999999999999999999999999999


Q ss_pred             CceeE
Q 031610          124 RSCSI  128 (156)
Q Consensus       124 ~~~~v  128 (156)
                      +++.|
T Consensus       179 ~~~~v  183 (555)
T 3i28_A          179 EVVFL  183 (555)
T ss_dssp             GEEEE
T ss_pred             HEEEE
Confidence            98765

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=99.54  E-value=1.3e-14  Score=106.60  Aligned_cols=88  Identities=10%  Similarity=0.154  Sum_probs=75.3

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++|++.++|+.|++. ++++++||..... +...++.+++.  |+.+++++..+..||+|..+..+++.+|+.|+++..
T Consensus       120 ~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~-~~~~l~~~g~~--f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~~  195 (254)
T 3umc_A          120 RPWPDTLAGMHALKAD-YWLAALSNGNTAL-MLDVARHAGLP--WDMLLCADLFGHYKPDPQVYLGACRLLDLPPQEVML  195 (254)
T ss_dssp             EECTTHHHHHHHHTTT-SEEEECCSSCHHH-HHHHHHHHTCC--CSEECCHHHHTCCTTSHHHHHHHHHHHTCCGGGEEE
T ss_pred             CCCccHHHHHHHHHhc-CeEEEEeCCCHHH-HHHHHHHcCCC--cceEEeecccccCCCCHHHHHHHHHHcCCChHHEEE
Confidence            5789999999999886 9999999998777 68889999986  888888888889999999999999999999999877


Q ss_pred             EeeehhhhHHHhh
Q 031610          128 IFMFQQVMIEMFQ  140 (156)
Q Consensus       128 v~~~~~~~~~~~~  140 (156)
                      |+ -+.+++.|..
T Consensus       196 iG-D~~~Di~~a~  207 (254)
T 3umc_A          196 CA-AHNYDLKAAR  207 (254)
T ss_dssp             EE-SCHHHHHHHH
T ss_pred             Ec-CchHhHHHHH
Confidence            66 3455666653

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=99.53  E-value=2.7e-14  Score=105.90  Aligned_cols=92  Identities=9%  Similarity=-0.003  Sum_probs=76.4

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC-ceEEEecccCCCCCCHHHHHHHHHHhCCCC-cCc
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPMVVIYMYTKDSSNASSSESTCAIFHFHP-KRS  125 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f-~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~-~~~  125 (156)
                      .++|++.++|+.|+++|++++++|+++... +...++.+++..+| +.+++++.....||+|..+..+++.+|+.+ +++
T Consensus       103 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~  181 (267)
T 1swv_A          103 SPINGVKEVIASLRERGIKIGSTTGYTREM-MDIVAKEAALQGYKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNHM  181 (267)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEBCSSCHHH-HHHHHHHHHHTTCCCSCCBCGGGSSCCTTSSHHHHHHHHHHTCCSGGGE
T ss_pred             ccCccHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHcCCcccChHheecCCccCCCCCCHHHHHHHHHHhCCCCCcCE
Confidence            468999999999999999999999998776 68888888888775 777777788889999999999999999998 777


Q ss_pred             eeEeeehhhhHHHhhc
Q 031610          126 CSIFMFQQVMIEMFQN  141 (156)
Q Consensus       126 ~~v~~~~~~~~~~~~~  141 (156)
                      .+|+ -+.+++.|..+
T Consensus       182 i~iG-D~~nDi~~a~~  196 (267)
T 1swv_A          182 IKVG-DTVSDMKEGRN  196 (267)
T ss_dssp             EEEE-SSHHHHHHHHH
T ss_pred             EEEe-CCHHHHHHHHH
Confidence            6554 34466666643

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=99.53  E-value=3.9e-14  Score=100.34  Aligned_cols=109  Identities=16%  Similarity=0.032  Sum_probs=77.4

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCC-cHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEe
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYP-HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI   98 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~-~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~   98 (156)
                      +++|+|+||+||||++........++....+. .-..+|+.|+++|++++|+||++... +...++.+|+. +|..    
T Consensus        10 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~lgi~-~~~~----   83 (176)
T 3mmz_A           10 EDIDAVVLDFDGTQTDDRVLIDSDGREFVSVHRGDGLGIAALRKSGLTMLILSTEQNPV-VAARARKLKIP-VLHG----   83 (176)
T ss_dssp             GGCSEEEECCTTTTSCSCCEECTTCCEEEEEEHHHHHHHHHHHHTTCEEEEEESSCCHH-HHHHHHHHTCC-EEES----
T ss_pred             hcCCEEEEeCCCCcCcCCEeecCCccHhHhcccccHHHHHHHHHCCCeEEEEECcChHH-HHHHHHHcCCe-eEeC----
Confidence            35799999999999984332111111111110 01116999999999999999999888 79999999987 3321    


Q ss_pred             cccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhh
Q 031610           99 YMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus        99 ~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  140 (156)
                           .||+|..+..+++.+++.++++.+++ -+.+++.+..
T Consensus        84 -----~~~k~~~l~~~~~~~~~~~~~~~~vG-D~~nD~~~~~  119 (176)
T 3mmz_A           84 -----IDRKDLALKQWCEEQGIAPERVLYVG-NDVNDLPCFA  119 (176)
T ss_dssp             -----CSCHHHHHHHHHHHHTCCGGGEEEEE-CSGGGHHHHH
T ss_pred             -----CCChHHHHHHHHHHcCCCHHHEEEEc-CCHHHHHHHH
Confidence                 39999999999999999999876554 3334555543

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=99.53  E-value=8e-15  Score=113.10  Aligned_cols=91  Identities=15%  Similarity=0.090  Sum_probs=74.4

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEec----------ccCCCCCCHHHHHHHHH
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIY----------MYTKDSSNASSSESTCA  116 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~----------~~~~~kp~p~~~~~~~~  116 (156)
                      ..++||+.++|+.|+++|++++|+||+.... +..+++.+|+..+|+..+..+          .....||+|..+..+++
T Consensus       178 ~~l~pg~~e~L~~Lk~~G~~v~IvSn~~~~~-~~~~l~~lgl~~~f~~~l~~~dg~~tg~i~~~~~~~kpkp~~~~~~~~  256 (317)
T 4eze_A          178 MTLSPGLLTILPVIKAKGFKTAIISGGLDIF-TQRLKARYQLDYAFSNTVEIRDNVLTDNITLPIMNAANKKQTLVDLAA  256 (317)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHTCSEEEEECEEEETTEEEEEECSSCCCHHHHHHHHHHHHH
T ss_pred             CEECcCHHHHHHHHHhCCCEEEEEeCccHHH-HHHHHHHcCCCeEEEEEEEeeCCeeeeeEecccCCCCCCHHHHHHHHH
Confidence            4689999999999999999999999999887 799999999998888765322          23456899999999999


Q ss_pred             HhCCCCcCceeEeeehhhhHHHh
Q 031610          117 IFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                      ++++.|+++.+|+ -+.+++.+.
T Consensus       257 ~lgv~~~~~i~VG-Ds~~Di~aa  278 (317)
T 4eze_A          257 RLNIATENIIACG-DGANDLPML  278 (317)
T ss_dssp             HHTCCGGGEEEEE-CSGGGHHHH
T ss_pred             HcCCCcceEEEEe-CCHHHHHHH
Confidence            9999999987655 233455444

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=99.52  E-value=2.3e-14  Score=104.78  Aligned_cols=89  Identities=13%  Similarity=0.097  Sum_probs=75.2

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|+++ ++++++||.+... +...++.+++.  |+.+++++.....||+|..+..+++.+|+.|+++.
T Consensus       115 ~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~~~~--f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~  190 (254)
T 3umg_A          115 LTPWPDSVPGLTAIKAE-YIIGPLSNGNTSL-LLDMAKNAGIP--WDVIIGSDINRKYKPDPQAYLRTAQVLGLHPGEVM  190 (254)
T ss_dssp             CCBCTTHHHHHHHHHHH-SEEEECSSSCHHH-HHHHHHHHTCC--CSCCCCHHHHTCCTTSHHHHHHHHHHTTCCGGGEE
T ss_pred             CcCCcCHHHHHHHHHhC-CeEEEEeCCCHHH-HHHHHHhCCCC--eeEEEEcCcCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence            35789999999999997 9999999999777 68889999986  88777778888899999999999999999999987


Q ss_pred             eEeeehhhhHHHhh
Q 031610          127 SIFMFQQVMIEMFQ  140 (156)
Q Consensus       127 ~v~~~~~~~~~~~~  140 (156)
                      .|+ -+.+++.+.+
T Consensus       191 ~iG-D~~~Di~~a~  203 (254)
T 3umg_A          191 LAA-AHNGDLEAAH  203 (254)
T ss_dssp             EEE-SCHHHHHHHH
T ss_pred             EEe-CChHhHHHHH
Confidence            666 3345665553

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=99.51  E-value=3.7e-14  Score=106.45  Aligned_cols=91  Identities=14%  Similarity=0.008  Sum_probs=75.9

Q ss_pred             cccCCcHHHHHHHHHHC-CCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCC-----
Q 031610           47 PYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHF-----  120 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~-G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~-----  120 (156)
                      ..++|++.++|+.|++. |++++++|++.... +...++.+++. .|+.++++++....||+|..+..+++.+++     
T Consensus       113 ~~~~~g~~~~L~~l~~~~g~~l~i~T~~~~~~-~~~~l~~~~l~-~f~~i~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  190 (275)
T 2qlt_A          113 SIEVPGAVKLCNALNALPKEKWAVATSGTRDM-AKKWFDILKIK-RPEYFITANDVKQGKPHPEPYLKGRNGLGFPINEQ  190 (275)
T ss_dssp             CEECTTHHHHHHHHHTSCGGGEEEECSSCHHH-HHHHHHHHTCC-CCSSEECGGGCSSCTTSSHHHHHHHHHTTCCCCSS
T ss_pred             CCcCcCHHHHHHHHHhccCCeEEEEeCCCHHH-HHHHHHHcCCC-ccCEEEEcccCCCCCCChHHHHHHHHHcCCCcccc
Confidence            46889999999999999 99999999999777 68889999986 477788878888899999999999999999     


Q ss_pred             --CCcCceeEeeehhhhHHHhh
Q 031610          121 --HPKRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       121 --~~~~~~~v~~~~~~~~~~~~  140 (156)
                        .|+++..++ -+.+++.|..
T Consensus       191 ~~~~~~~i~~G-Ds~nDi~~a~  211 (275)
T 2qlt_A          191 DPSKSKVVVFE-DAPAGIAAGK  211 (275)
T ss_dssp             CGGGSCEEEEE-SSHHHHHHHH
T ss_pred             CCCcceEEEEe-CCHHHHHHHH
Confidence              888876544 3345666653

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=99.51  E-value=9.5e-14  Score=99.17  Aligned_cols=109  Identities=14%  Similarity=0.048  Sum_probs=79.4

Q ss_pred             CCCceEEEecCCccccccccccccCCCcc-cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEe
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPY-LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI   98 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~-l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~   98 (156)
                      .++|+|+||+||||++........++... +......+|+.|+++|++++|+||++... +...++.+|+..+|..    
T Consensus        24 ~~ik~vifD~DGTL~~~~~~~~~~~~~~~~~~~~d~~~l~~L~~~g~~v~ivT~~~~~~-~~~~l~~lgl~~~~~~----   98 (188)
T 2r8e_A           24 ENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKL-VEDRCATLGITHLYQG----   98 (188)
T ss_dssp             HTCSEEEECCCCCCBCSEEEEETTSCEEEEEEHHHHHHHHHHHTTTCEEEEECSSCCHH-HHHHHHHHTCCEEECS----
T ss_pred             hcCCEEEEeCCCCcCCCCEEecCCCcEEEEeecccHHHHHHHHHCCCeEEEEeCCChHH-HHHHHHHcCCceeecC----
Confidence            46899999999999985332222222111 11122348999999999999999999888 7999999998766532    


Q ss_pred             cccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610           99 YMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        99 ~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                           .||+|..+..+++.+++.|+++.+|+ -+.+++.+.
T Consensus        99 -----~kpk~~~~~~~~~~~g~~~~~~~~iG-D~~~Di~~a  133 (188)
T 2r8e_A           99 -----QSNKLIAFSDLLEKLAIAPENVAYVG-DDLIDWPVM  133 (188)
T ss_dssp             -----CSCSHHHHHHHHHHHTCCGGGEEEEE-SSGGGHHHH
T ss_pred             -----CCCCHHHHHHHHHHcCCCHHHEEEEC-CCHHHHHHH
Confidence                 59999999999999999998876554 223344444

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=99.50  E-value=5.2e-14  Score=102.00  Aligned_cols=92  Identities=13%  Similarity=0.083  Sum_probs=74.3

Q ss_pred             cccCCcHHHHHHHHHHC-CCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccC-CCCCCHHHHHHHHHHhC--CCC
Q 031610           47 PYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT-KDSSNASSSESTCAIFH--FHP  122 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~-G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~-~~kp~p~~~~~~~~~~~--~~~  122 (156)
                      ..++|++.++|+.|+++ |++++++||+.... +...++.+++..+|+.++++++.. ..||.|..+..+++.+|  +.|
T Consensus        92 ~~~~~~~~~~l~~l~~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~lg~~~~~  170 (234)
T 2hcf_A           92 ITLLEGVRELLDALSSRSDVLLGLLTGNFEAS-GRHKLKLPGIDHYFPFGAFADDALDRNELPHIALERARRMTGANYSP  170 (234)
T ss_dssp             EEECTTHHHHHHHHHTCTTEEEEEECSSCHHH-HHHHHHTTTCSTTCSCEECTTTCSSGGGHHHHHHHHHHHHHCCCCCG
T ss_pred             CCcCCCHHHHHHHHHhCCCceEEEEcCCcHHH-HHHHHHHCCchhhcCcceecCCCcCccchHHHHHHHHHHHhCCCCCc
Confidence            35789999999999999 99999999999777 688899999999998766665543 35688899999999999  899


Q ss_pred             cCceeEeeehhhhHHHhh
Q 031610          123 KRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       123 ~~~~~v~~~~~~~~~~~~  140 (156)
                      +++.+|+ -+.+++.+..
T Consensus       171 ~~~i~iG-D~~~Di~~a~  187 (234)
T 2hcf_A          171 SQIVIIG-DTEHDIRCAR  187 (234)
T ss_dssp             GGEEEEE-SSHHHHHHHH
T ss_pred             ccEEEEC-CCHHHHHHHH
Confidence            9876554 2334555553

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=99.48  E-value=1.1e-13  Score=98.60  Aligned_cols=91  Identities=20%  Similarity=0.190  Sum_probs=69.2

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc----------cCCCCCCHHHHHHHHHH
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM----------YTKDSSNASSSESTCAI  117 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~----------~~~~kp~p~~~~~~~~~  117 (156)
                      .++|++.++|+.|+++|++++++||++... +...++.+++..+|.......+          ....+++|..+..+++.
T Consensus        76 ~l~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~  154 (211)
T 1l7m_A           76 TPTEGAEETIKELKNRGYVVAVVSGGFDIA-VNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAKI  154 (211)
T ss_dssp             CBCTTHHHHHHHHHHTTEEEEEEEEEEHHH-HHHHHHHHTCSEEEEEEEEEETTEEEEEEECSSCSTTHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHCCCEEEEEcCCcHHH-HHHHHHHcCCCeEEEeeeEEECCEEcCCcccCccCCccHHHHHHHHHHH
Confidence            578999999999999999999999998776 6888888998776654332111          12245678999999999


Q ss_pred             hCCCCcCceeEeeehhhhHHHhh
Q 031610          118 FHFHPKRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~  140 (156)
                      +++.++++.+++ -+.+++.|..
T Consensus       155 lgi~~~~~~~iG-D~~~Di~~~~  176 (211)
T 1l7m_A          155 EGINLEDTVAVG-DGANDISMFK  176 (211)
T ss_dssp             HTCCGGGEEEEE-CSGGGHHHHH
T ss_pred             cCCCHHHEEEEe-cChhHHHHHH
Confidence            999999887655 3455666653

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=99.47  E-value=2e-13  Score=96.31  Aligned_cols=107  Identities=18%  Similarity=0.026  Sum_probs=75.3

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCC-cHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHH--HcCCCCCCceE
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYP-HAKGILEALKEKGIHVAVASRSPAPDIAKTFLH--KLGIHSMFVPM   95 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~-~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~--~l~l~~~f~~~   95 (156)
                      ...+|+|+||+||||++......+.++....+. .-..+|+.|+++|++++|+||+  .. +...++  .+++. +|.  
T Consensus         6 ~~~ikliv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~~~L~~Lk~~Gi~~~I~Tg~--~~-~~~~l~~l~lgi~-~~~--   79 (168)
T 3ewi_A            6 LKEIKLLVCNIDGCLTNGHIYVSGDQKEIISYDVKDAIGISLLKKSGIEVRLISER--AC-SKQTLSALKLDCK-TEV--   79 (168)
T ss_dssp             -CCCCEEEEECCCCCSCSCCBCCSSCCCEEEEEHHHHHHHHHHHHTTCEEEEECSS--CC-CHHHHHTTCCCCC-EEC--
T ss_pred             HhcCcEEEEeCccceECCcEEEcCCCCEEEEEecCcHHHHHHHHHCCCEEEEEeCc--HH-HHHHHHHhCCCcE-EEE--
Confidence            457899999999999986443334443322221 1123799999999999999999  44 588888  56664 321  


Q ss_pred             EEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610           96 VVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        96 ~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                        +     .+++|..+..+++.+++.|+++.+++ -+.+.+.|+
T Consensus        80 --g-----~~~K~~~l~~~~~~~gi~~~~~~~vG-D~~nDi~~~  115 (168)
T 3ewi_A           80 --S-----VSDKLATVDEWRKEMGLCWKEVAYLG-NEVSDEECL  115 (168)
T ss_dssp             --S-----CSCHHHHHHHHHHHTTCCGGGEEEEC-CSGGGHHHH
T ss_pred             --C-----CCChHHHHHHHHHHcCcChHHEEEEe-CCHhHHHHH
Confidence              1     36789999999999999999876554 344455554

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=99.47  E-value=3.9e-14  Score=112.55  Aligned_cols=121  Identities=17%  Similarity=0.049  Sum_probs=91.8

Q ss_pred             CCCCCceEEEecCCcccccccccc---------------------------------------------ccCCCcccCCc
Q 031610           18 FENLPRLVVFDLDYTLWPFYCECC---------------------------------------------YEDEIPYLYPH   52 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~~~---------------------------------------------~~~~~~~l~~~   52 (156)
                      ..+++|+|+||+||||++......                                             .......++||
T Consensus       181 ~~~~~k~viFD~DgTLi~~~~~~~la~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pg  260 (415)
T 3p96_A          181 ERRAKRLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLPATVIDEVAGQLELMPG  260 (415)
T ss_dssp             TTTCCCEEEECTBTTTBSSCHHHHHHHHTTCHHHHHHHHHHHHTTCSCHHHHHHHHHHTTTTCBTHHHHHHHHHCCBCTT
T ss_pred             cccCCcEEEEcCcccCcCCchHHHHHHHcCCcHHHHHHHHHHhcCCcCHHHHHHHHHHHhcCCCHHHHHHHHHhCccCcc
Confidence            356899999999999998532100                                             00112368999


Q ss_pred             HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE-------Ee---cccCCCCCCHHHHHHHHHHhCCCC
Q 031610           53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-------VI---YMYTKDSSNASSSESTCAIFHFHP  122 (156)
Q Consensus        53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~-------~~---~~~~~~kp~p~~~~~~~~~~~~~~  122 (156)
                      +.++|+.|+++|++++|+||+.... +...++.+|+..+|...+       ++   .+....||+|..+..+++++++.|
T Consensus       261 ~~e~l~~Lk~~G~~~~ivS~~~~~~-~~~~~~~lgl~~~~~~~l~~~dg~~tg~~~~~v~~~kpk~~~~~~~~~~~gi~~  339 (415)
T 3p96_A          261 ARTTLRTLRRLGYACGVVSGGFRRI-IEPLAEELMLDYVAANELEIVDGTLTGRVVGPIIDRAGKATALREFAQRAGVPM  339 (415)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCSEEEEECEEEETTEEEEEECSSCCCHHHHHHHHHHHHHHHTCCG
T ss_pred             HHHHHHHHHHCCCEEEEEcCCcHHH-HHHHHHHcCccceeeeeEEEeCCEEEeeEccCCCCCcchHHHHHHHHHHcCcCh
Confidence            9999999999999999999998887 799999999988776432       11   244457999999999999999999


Q ss_pred             cCceeEeeehhhhHHHhh
Q 031610          123 KRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       123 ~~~~~v~~~~~~~~~~~~  140 (156)
                      +++.+|+ -+.+++.+..
T Consensus       340 ~~~i~vG-D~~~Di~~a~  356 (415)
T 3p96_A          340 AQTVAVG-DGANDIDMLA  356 (415)
T ss_dssp             GGEEEEE-CSGGGHHHHH
T ss_pred             hhEEEEE-CCHHHHHHHH
Confidence            9987655 3335555553

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=99.45  E-value=8.8e-14  Score=100.46  Aligned_cols=88  Identities=17%  Similarity=0.109  Sum_probs=72.9

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC-ceEEEecccCCC--CCCHHHHHHHHHHhCCCCcC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPMVVIYMYTKD--SSNASSSESTCAIFHFHPKR  124 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f-~~~~~~~~~~~~--kp~p~~~~~~~~~~~~~~~~  124 (156)
                      .++|++.++|+.++.   +++++|+..... +...++.+++..+| +.+++++.....  ||+|..+..+++.+|+.|++
T Consensus        87 ~~~~~~~~~l~~l~~---~~~i~s~~~~~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~~~kpk~~~~~~~~~~l~~~~~~  162 (229)
T 2fdr_A           87 KIIDGVKFALSRLTT---PRCICSNSSSHR-LDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDR  162 (229)
T ss_dssp             CBCTTHHHHHHHCCS---CEEEEESSCHHH-HHHHHHHTTCGGGTTTCEEEHHHHCTTCCTTSSHHHHHHHHHHTCCGGG
T ss_pred             ccCcCHHHHHHHhCC---CEEEEECCChhH-HHHHHHhCChHHhccceEEeccccccCCCCcCHHHHHHHHHHcCCChhH
Confidence            577888888888764   899999998777 68889999999999 888888877888  99999999999999999998


Q ss_pred             ceeEeeehhhhHHHhh
Q 031610          125 SCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       125 ~~~v~~~~~~~~~~~~  140 (156)
                      +..++ -+.+++.|..
T Consensus       163 ~i~iG-D~~~Di~~a~  177 (229)
T 2fdr_A          163 VVVVE-DSVHGIHGAR  177 (229)
T ss_dssp             EEEEE-SSHHHHHHHH
T ss_pred             eEEEc-CCHHHHHHHH
Confidence            76554 3345666664

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=99.45  E-value=2.2e-13  Score=101.93  Aligned_cols=75  Identities=11%  Similarity=0.048  Sum_probs=57.8

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc--C---------CCCCCceEEEecccCCCCCCHHHHHHHHH
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL--G---------IHSMFVPMVVIYMYTKDSSNASSSESTCA  116 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l--~---------l~~~f~~~~~~~~~~~~kp~p~~~~~~~~  116 (156)
                      .++||+.++|+.    |++++|+||++... +...++.+  |         +..+|+.++.. .....||+|++|..+++
T Consensus       125 ~~~pgv~e~L~~----g~~l~i~Tn~~~~~-~~~~l~~~~~g~~~~~~~l~l~~~~~~~f~~-~~~g~KP~p~~~~~a~~  198 (253)
T 2g80_A          125 PVYADAIDFIKR----KKRVFIYSSGSVKA-QKLLFGYVQDPNAPAHDSLDLNSYIDGYFDI-NTSGKKTETQSYANILR  198 (253)
T ss_dssp             CCCHHHHHHHHH----CSCEEEECSSCHHH-HHHHHHSBCCTTCTTSCCBCCGGGCCEEECH-HHHCCTTCHHHHHHHHH
T ss_pred             CCCCCHHHHHHc----CCEEEEEeCCCHHH-HHHHHHhhcccccccccccchHhhcceEEee-eccCCCCCHHHHHHHHH
Confidence            467788888877    89999999999876 68888766  3         66666655433 22125999999999999


Q ss_pred             HhCCCCcCceeE
Q 031610          117 IFHFHPKRSCSI  128 (156)
Q Consensus       117 ~~~~~~~~~~~v  128 (156)
                      ++|+.|+++..|
T Consensus       199 ~lg~~p~~~l~v  210 (253)
T 2g80_A          199 DIGAKASEVLFL  210 (253)
T ss_dssp             HHTCCGGGEEEE
T ss_pred             HcCCCcccEEEE
Confidence            999999987644

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=99.44  E-value=9.4e-14  Score=100.77  Aligned_cols=73  Identities=21%  Similarity=0.286  Sum_probs=58.8

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC--CCceEE--------EecccCC----CCCCHHHHH
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MFVPMV--------VIYMYTK----DSSNASSSE  112 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~--~f~~~~--------~~~~~~~----~kp~p~~~~  112 (156)
                      .+++||+.++|+.|+++|++++|+||++... +...++.+|+..  +|+.++        ++.+...    .+|+|..+.
T Consensus        85 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~Kp~~~~  163 (225)
T 1nnl_A           85 PHLTPGIRELVSRLQERNVQVFLISGGFRSI-VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIK  163 (225)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCCGGGEEEECEEECTTSCEEEECTTSGGGSTTHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHHHcCCCcccEEeeeEEEcCCCcEecCCCCCcccCCCchHHHHH
Confidence            4689999999999999999999999999877 799999999974  665542        2322221    367889999


Q ss_pred             HHHHHhCC
Q 031610          113 STCAIFHF  120 (156)
Q Consensus       113 ~~~~~~~~  120 (156)
                      .+++++++
T Consensus       164 ~~~~~~~~  171 (225)
T 1nnl_A          164 LLKEKFHF  171 (225)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHcCC
Confidence            99999998

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=99.44  E-value=6.2e-13  Score=97.91  Aligned_cols=86  Identities=10%  Similarity=0.133  Sum_probs=70.9

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|+ +|++++++||+.... +...++.+++..+|+.+++.     .||+|..+..+++.+++.|+++.
T Consensus       111 ~~~~~~~~~~l~~l~-~~~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~i~~~-----~kp~~~~~~~~~~~l~~~~~~~i  183 (251)
T 2pke_A          111 VEVIAGVREAVAAIA-ADYAVVLITKGDLFH-QEQKIEQSGLSDLFPRIEVV-----SEKDPQTYARVLSEFDLPAERFV  183 (251)
T ss_dssp             CCBCTTHHHHHHHHH-TTSEEEEEEESCHHH-HHHHHHHHSGGGTCCCEEEE-----SCCSHHHHHHHHHHHTCCGGGEE
T ss_pred             CCcCccHHHHHHHHH-CCCEEEEEeCCCHHH-HHHHHHHcCcHHhCceeeee-----CCCCHHHHHHHHHHhCcCchhEE
Confidence            357899999999999 999999999998777 68889999999999887764     58999999999999999999887


Q ss_pred             eEeeehhhhHHHh
Q 031610          127 SIFMFQQVMIEMF  139 (156)
Q Consensus       127 ~v~~~~~~~~~~~  139 (156)
                      .|+-...+++.+.
T Consensus       184 ~iGD~~~~Di~~a  196 (251)
T 2pke_A          184 MIGNSLRSDVEPV  196 (251)
T ss_dssp             EEESCCCCCCHHH
T ss_pred             EECCCchhhHHHH
Confidence            6552221445554

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=99.43  E-value=2.1e-13  Score=97.41  Aligned_cols=92  Identities=15%  Similarity=0.118  Sum_probs=66.4

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC--CCCceEE-Eec-c----cCCCCCCHHHHHHHH-HHh
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH--SMFVPMV-VIY-M----YTKDSSNASSSESTC-AIF  118 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~--~~f~~~~-~~~-~----~~~~kp~p~~~~~~~-~~~  118 (156)
                      .++|++.++|+.|+++|++++++||+.... +...++.+++.  .+|...+ ... .    ....+|+|......+ +.+
T Consensus        82 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (219)
T 3kd3_A           82 LLTDGIKELVQDLKNKGFEIWIFSGGLSES-IQPFADYLNIPRENIFAVETIWNSDGSFKELDNSNGACDSKLSAFDKAK  160 (219)
T ss_dssp             TBCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHTCCGGGEEEEEEEECTTSBEEEEECTTSTTTCHHHHHHHHG
T ss_pred             cCChhHHHHHHHHHHCCCeEEEEcCCcHHH-HHHHHHHcCCCcccEEEeeeeecCCCceeccCCCCCCcccHHHHHHHHh
Confidence            488999999999999999999999998777 68999999984  3454322 212 1    245777776565555 555


Q ss_pred             CCCCcCceeEeeehhhhHHHhhc
Q 031610          119 HFHPKRSCSIFMFQQVMIEMFQN  141 (156)
Q Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~  141 (156)
                      ++.|+++.+++ -+.+++.|.++
T Consensus       161 ~~~~~~~~~vG-D~~~Di~~~~~  182 (219)
T 3kd3_A          161 GLIDGEVIAIG-DGYTDYQLYEK  182 (219)
T ss_dssp             GGCCSEEEEEE-SSHHHHHHHHH
T ss_pred             CCCCCCEEEEE-CCHhHHHHHhC
Confidence            99998876655 34456666643

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=99.42  E-value=6.9e-14  Score=102.76  Aligned_cols=79  Identities=14%  Similarity=-0.038  Sum_probs=62.5

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCC--------CCCCHHH-HH-----
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTK--------DSSNASS-SE-----  112 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~--------~kp~p~~-~~-----  112 (156)
                      ..++||+.++|+.|+++|++++|+||++... +...++  ++..+ +.+++++....        .||+|.. +.     
T Consensus        76 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~-~~~~l~--~l~~~-~~v~~~~~~~~~~~~~~~~~kp~p~~~~~~~~~~  151 (236)
T 2fea_A           76 AKIREGFREFVAFINEHEIPFYVISGGMDFF-VYPLLE--GIVEK-DRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGCC  151 (236)
T ss_dssp             CCBCTTHHHHHHHHHHHTCCEEEEEEEEHHH-HHHHHT--TTSCG-GGEEEEEEECSSSBCEEECTTCCCTTCCSCCSSC
T ss_pred             CCCCccHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHh--cCCCC-CeEEeeeeEEcCCceEEecCCCCccccccccCCc
Confidence            4689999999999999999999999998776 677777  77555 66776654433        7888884 43     


Q ss_pred             --HHHHHhCCCCcCceeEe
Q 031610          113 --STCAIFHFHPKRSCSIF  129 (156)
Q Consensus       113 --~~~~~~~~~~~~~~~v~  129 (156)
                        .+++++++.|+++.+|+
T Consensus       152 K~~~~~~~~~~~~~~~~vG  170 (236)
T 2fea_A          152 KPSVIHELSEPNQYIIMIG  170 (236)
T ss_dssp             HHHHHHHHCCTTCEEEEEE
T ss_pred             HHHHHHHHhccCCeEEEEe
Confidence              88899999988876554

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=99.42  E-value=6.4e-15  Score=107.41  Aligned_cols=111  Identities=13%  Similarity=0.114  Sum_probs=73.3

Q ss_pred             CCceEEEecCCcccccccccc-------cc------------------CCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECC-------YE------------------DEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~-------~~------------------~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~   75 (156)
                      ++|+|+||+||||+++.....       ..                  .....+.|++.++|+.|+++|++++|+||++.
T Consensus        36 ~~kaviFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~L~~~G~~l~ivTn~~~  115 (211)
T 2b82_A           36 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSP  115 (211)
T ss_dssp             CCCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECSCC
T ss_pred             CCCEEEEcCCCCCCcCcHHHHHHHHHhhHHHHHHhhhHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHCCCEEEEEcCCcH
Confidence            589999999999998522100       00                  00113567999999999999999999999986


Q ss_pred             hhHHHHHHHHcCCCCCCceEEE-ec--ccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhc
Q 031610           76 PDIAKTFLHKLGIHSMFVPMVV-IY--MYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQN  141 (156)
Q Consensus        76 ~~~~~~~l~~l~l~~~f~~~~~-~~--~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  141 (156)
                      .. +...++.  +..+|+.++. .+  .....||+|+.+..+++++++       .+|++|....+-.+
T Consensus       116 ~~-~~~~l~~--l~~~f~~i~~~~~~~~~~~~KP~p~~~~~~~~~~g~-------~l~VGDs~~Di~aA  174 (211)
T 2b82_A          116 TK-TETVSKT--LADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNI-------RIFYGDSDNDITAA  174 (211)
T ss_dssp             CS-SCCHHHH--HHHHTTCCTTTBCCCEECCCCTTCCCSHHHHHHTTE-------EEEEESSHHHHHHH
T ss_pred             HH-HHHHHHH--HHHhcCccccccchhhhcCCCCCHHHHHHHHHHCCC-------EEEEECCHHHHHHH
Confidence            65 3555544  2334443311 11  234479999999999999987       34555554444433

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=99.41  E-value=1.2e-12  Score=98.30  Aligned_cols=114  Identities=11%  Similarity=0.058  Sum_probs=74.1

Q ss_pred             cCCCCCceEEEecCCcccccccccc----------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC---hh
Q 031610           17 QFENLPRLVVFDLDYTLWPFYCECC----------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---PD   77 (156)
Q Consensus        17 ~~~~~~k~i~fDlDGTL~~~~~~~~----------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~---~~   77 (156)
                      ...+++++|+|||||||++......                .......++||+.++|+.|+++|++++|+||++.   ..
T Consensus        54 ~~~~~~kavifDlDGTLld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~  133 (258)
T 2i33_A           54 KGTEKKPAIVLDLDETVLDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDA  133 (258)
T ss_dssp             HCCSSEEEEEECSBTTTEECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHH
T ss_pred             ccCCCCCEEEEeCcccCcCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHH
Confidence            3467889999999999998521000                0001136899999999999999999999999983   34


Q ss_pred             HHHHHHHHcCCC--CCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhc
Q 031610           78 IAKTFLHKLGIH--SMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQN  141 (156)
Q Consensus        78 ~~~~~l~~l~l~--~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  141 (156)
                       +...++.+|+.  .++..+++.++.  .||.+  ...+.+ .+     ...++|++|....+...
T Consensus       134 -~~~~L~~~Gl~~v~~~~vi~~~~~~--~K~~~--~~~~~~-~~-----~~~~l~VGDs~~Di~aA  188 (258)
T 2i33_A          134 -TIKNLERVGAPQATKEHILLQDPKE--KGKEK--RRELVS-QT-----HDIVLFFGDNLSDFTGF  188 (258)
T ss_dssp             -HHHHHHHHTCSSCSTTTEEEECTTC--CSSHH--HHHHHH-HH-----EEEEEEEESSGGGSTTC
T ss_pred             -HHHHHHHcCCCcCCCceEEECCCCC--CCcHH--HHHHHH-hC-----CCceEEeCCCHHHhccc
Confidence             46777888998  667766665432  34444  333322 22     12255666665544443

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=99.40  E-value=6.6e-13  Score=96.58  Aligned_cols=91  Identities=8%  Similarity=-0.058  Sum_probs=68.3

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEec----------ccCCCCCCHHHHHHHHHH
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIY----------MYTKDSSNASSSESTCAI  117 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~----------~~~~~kp~p~~~~~~~~~  117 (156)
                      .++||+.++|+.|+++|++++|+||++... ++.+++.+|+..+|...+...          .....++++..+..+++.
T Consensus        92 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~K~~~~~~~~~~  170 (232)
T 3fvv_A           92 SLTVQAVDVVRGHLAAGDLCALVTATNSFV-TAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAG  170 (232)
T ss_dssp             GCCHHHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCCEEEECEEEEETTEEEEEEESSCSSTHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCEEEEcceEEECCEEeeeecCCCCcchHHHHHHHHHHHH
Confidence            579999999999999999999999999877 799999999986654432211          223346677889999999


Q ss_pred             hC---CCCcCceeEeeehhhhHHHhh
Q 031610          118 FH---FHPKRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       118 ~~---~~~~~~~~v~~~~~~~~~~~~  140 (156)
                      ++   +.|+++.+++ -+.+++.+..
T Consensus       171 ~~~~~~~~~~~~~vG-Ds~~D~~~~~  195 (232)
T 3fvv_A          171 MGLALGDFAESYFYS-DSVNDVPLLE  195 (232)
T ss_dssp             TTCCGGGSSEEEEEE-CCGGGHHHHH
T ss_pred             cCCCcCchhheEEEe-CCHhhHHHHH
Confidence            99   8888876544 3334555543

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=99.39  E-value=3.8e-13  Score=96.31  Aligned_cols=90  Identities=11%  Similarity=0.051  Sum_probs=69.6

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc-eEEEecccC---CCCCCHHHHHHHHHHhCCCC
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV-PMVVIYMYT---KDSSNASSSESTCAIFHFHP  122 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~-~~~~~~~~~---~~kp~p~~~~~~~~~~~~~~  122 (156)
                      ..++||+.++|+.|+++ ++++++||++... +...++.+|+..+|. .++++++..   ..+|+|..+..+++.++..|
T Consensus        68 ~~~~~g~~~~l~~l~~~-~~~~i~s~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~~~~~~p~p~~~~~~l~~l~~~~  145 (206)
T 1rku_A           68 LKPLEGAVEFVDWLRER-FQVVILSDTFYEF-SQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLY  145 (206)
T ss_dssp             CCCCTTHHHHHHHHHTT-SEEEEEEEEEHHH-HHHHHHHTTCCCEEEEEEEECTTSCEEEEECCSSSHHHHHHHHHHHTT
T ss_pred             cCCCccHHHHHHHHHhc-CcEEEEECChHHH-HHHHHHHcCCcceecceeEEcCCceEEeeecCCCchHHHHHHHHHhcC
Confidence            46899999999999999 9999999998777 789999999999994 555544432   22588999999999999988


Q ss_pred             cCceeEeeehhhhHHHh
Q 031610          123 KRSCSIFMFQQVMIEMF  139 (156)
Q Consensus       123 ~~~~~v~~~~~~~~~~~  139 (156)
                      +++.+|+ -+.+++.+.
T Consensus       146 ~~~~~iG-D~~~Di~~a  161 (206)
T 1rku_A          146 YRVIAAG-DSYNDTTML  161 (206)
T ss_dssp             CEEEEEE-CSSTTHHHH
T ss_pred             CEEEEEe-CChhhHHHH
Confidence            7665544 223344444

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=99.37  E-value=2.2e-12  Score=94.80  Aligned_cols=61  Identities=23%  Similarity=0.282  Sum_probs=53.6

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      |+|+|++|+||||++      .+.   .+.|.+.++|++|+++|++++++|||+... +...++.+++..+
T Consensus         4 m~kli~~DlDGTLl~------~~~---~i~~~~~~~l~~l~~~g~~~~i~TGr~~~~-~~~~~~~l~~~~~   64 (227)
T 1l6r_A            4 MIRLAAIDVDGNLTD------RDR---LISTKAIESIRSAEKKGLTVSLLSGNVIPV-VYALKIFLGINGP   64 (227)
T ss_dssp             CCCEEEEEHHHHSBC------TTS---CBCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCCSC
T ss_pred             ceEEEEEECCCCCcC------CCC---cCCHHHHHHHHHHHHCCCEEEEECCCCcHH-HHHHHHHhCCCCe
Confidence            579999999999998      333   578899999999999999999999999887 7888999988753

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=99.37  E-value=2.3e-12  Score=96.09  Aligned_cols=57  Identities=21%  Similarity=0.375  Sum_probs=44.4

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCC---CChhHHHHHHHHcCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---PAPDIAKTFLHKLGI   88 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~---~~~~~~~~~l~~l~l   88 (156)
                      ++|+|+|||||||++      .+.   .+ |++.++|++++++|++++++||+   +... +...++.+|+
T Consensus         4 ~~kli~~DlDGTLl~------~~~---~i-~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~-~~~~l~~lg~   63 (264)
T 3epr_A            4 AYKGYLIDLDGTIYK------GKS---RI-PAGERFIERLQEKGIPYMLVTNNTTRTPES-VQEMLRGFNV   63 (264)
T ss_dssp             CCCEEEECCBTTTEE------TTE---EC-HHHHHHHHHHHHHTCCEEEEECCCSSCHHH-HHHHHHTTTC
T ss_pred             CCCEEEEeCCCceEe------CCE---EC-cCHHHHHHHHHHCCCeEEEEeCCCCCCHHH-HHHHHHHCCC
Confidence            589999999999998      332   34 89999999999999999999954   4444 3555555554

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=99.36  E-value=2.5e-12  Score=95.74  Aligned_cols=57  Identities=18%  Similarity=0.198  Sum_probs=44.9

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCC---CChhHHHHHHHHcCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---PAPDIAKTFLHKLGI   88 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~---~~~~~~~~~l~~l~l   88 (156)
                      ++|+|+||+||||++      +.    .+.|+++++|++|+++|++++++||+   +... +...++.+|+
T Consensus         5 ~~kli~~DlDGTLl~------~~----~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~-~~~~l~~lg~   64 (266)
T 3pdw_A            5 TYKGYLIDLDGTMYN------GT----EKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQ-VADKLVSFDI   64 (266)
T ss_dssp             CCSEEEEECSSSTTC------HH----HHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHH-HHHHHHHTTC
T ss_pred             cCCEEEEeCcCceEe------CC----EeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHH-HHHHHHHcCC
Confidence            489999999999998      32    46688999999999999999999984   4344 3455555554

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=99.35  E-value=4.8e-13  Score=97.73  Aligned_cols=74  Identities=14%  Similarity=0.141  Sum_probs=58.2

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++| +++|+||++... +...++.+|+..+|+.+...   .  +++|..+..+++  ++.|+++.
T Consensus        95 ~~~~~g~~~~l~~l~~~g-~~~i~Tn~~~~~-~~~~l~~~gl~~~f~~~~~~---~--~~K~~~~~~~~~--~~~~~~~~  165 (231)
T 2p11_A           95 SRVYPGALNALRHLGARG-PTVILSDGDVVF-QPRKIARSGLWDEVEGRVLI---Y--IHKELMLDQVME--CYPARHYV  165 (231)
T ss_dssp             GGBCTTHHHHHHHHHTTS-CEEEEEECCSSH-HHHHHHHTTHHHHTTTCEEE---E--SSGGGCHHHHHH--HSCCSEEE
T ss_pred             CCcCccHHHHHHHHHhCC-CEEEEeCCCHHH-HHHHHHHcCcHHhcCeeEEe---c--CChHHHHHHHHh--cCCCceEE
Confidence            468999999999999999 999999999887 79999999998888765432   1  334666776666  67888765


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      +|+
T Consensus       166 ~vg  168 (231)
T 2p11_A          166 MVD  168 (231)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            443

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=99.35  E-value=1.9e-12  Score=96.51  Aligned_cols=59  Identities=29%  Similarity=0.353  Sum_probs=46.2

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEc---CCCChhHHHHHHHHcCC
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS---RSPAPDIAKTFLHKLGI   88 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T---~~~~~~~~~~~l~~l~l   88 (156)
                      ..++++|+||+||||++      + .   .+.|++.+++++|+++|++++++|   +|+... ....++.+|+
T Consensus        14 ~~~~~~v~~DlDGTLl~------~-~---~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~-~~~~~~~lg~   75 (271)
T 1vjr_A           14 LDKIELFILDMDGTFYL------D-D---SLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQD-YVRKLRNMGV   75 (271)
T ss_dssp             GGGCCEEEECCBTTTEE------T-T---EECTTHHHHHHHHHHTTCEEEEEESCTTSCHHH-HHHHHHHTTC
T ss_pred             ccCCCEEEEcCcCcEEe------C-C---EECcCHHHHHHHHHHcCCeEEEEECCCCCCHHH-HHHHHHHcCC
Confidence            45689999999999998      3 2   577999999999999999999999   455444 3555555544

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=99.32  E-value=9e-12  Score=91.83  Aligned_cols=47  Identities=21%  Similarity=0.268  Sum_probs=37.7

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~   75 (156)
                      ..++|+|+||+||||++      ..    .+.+++.++++.++++|++++++||+..
T Consensus         4 ~~~ik~i~fDlDGTLld------~~----~~~~~~~~ai~~l~~~G~~~~~~t~~~~   50 (259)
T 2ho4_A            4 RRALKAVLVDLNGTLHI------ED----AAVPGAQEALKRLRATSVMVRFVTNTTK   50 (259)
T ss_dssp             --CCCEEEEESSSSSCC-------------CCTTHHHHHHHHHTSSCEEEEEECCSS
T ss_pred             hhhCCEEEEeCcCcEEe------CC----EeCcCHHHHHHHHHHCCCeEEEEeCCCC
Confidence            45689999999999998      22    3558899999999999999999996653

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=99.29  E-value=2.5e-12  Score=99.31  Aligned_cols=92  Identities=13%  Similarity=0.066  Sum_probs=74.8

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE----------EecccCCCCCCHHHHHHHHH
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV----------VIYMYTKDSSNASSSESTCA  116 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~----------~~~~~~~~kp~p~~~~~~~~  116 (156)
                      .+++|++.++|+.|+++|++++++||..... +..+++.+|+..+|...+          ..++....||+|..+..+++
T Consensus       177 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~-~~~~~~~lgl~~~~~~~l~~~d~~~tg~~~~~~~~~kpk~~~~~~~~~  255 (335)
T 3n28_A          177 LPLMPELPELVATLHAFGWKVAIASGGFTYF-SDYLKEQLSLDYAQSNTLEIVSGKLTGQVLGEVVSAQTKADILLTLAQ  255 (335)
T ss_dssp             CCCCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHTCSEEEEEEEEEETTEEEEEEESCCCCHHHHHHHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHcCCCeEEeeeeEeeCCeeeeeecccccChhhhHHHHHHHHH
Confidence            4689999999999999999999999998777 789999999988776532          12245567999999999999


Q ss_pred             HhCCCCcCceeEeeehhhhHHHhh
Q 031610          117 IFHFHPKRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~  140 (156)
                      .+++.++++.+++ -+.+++.|..
T Consensus       256 ~lgi~~~~~v~vG-Ds~nDi~~a~  278 (335)
T 3n28_A          256 QYDVEIHNTVAVG-DGANDLVMMA  278 (335)
T ss_dssp             HHTCCGGGEEEEE-CSGGGHHHHH
T ss_pred             HcCCChhhEEEEe-CCHHHHHHHH
Confidence            9999999987665 3445666654

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=99.29  E-value=2.3e-11  Score=90.37  Aligned_cols=49  Identities=20%  Similarity=0.189  Sum_probs=41.5

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~   77 (156)
                      .+++|+|+||+||||++.      .    ...+++.++++.++++|++++++||++...
T Consensus         2 ~~~~k~v~fDlDGTL~~~------~----~~~~~~~~~l~~l~~~g~~~~~~t~~~~~~   50 (264)
T 1yv9_A            2 SLDYQGYLIDLDGTIYLG------K----EPIPAGKRFVERLQEKDLPFLFVTNNTTKS   50 (264)
T ss_dssp             CCSCCEEEECCBTTTEET------T----EECHHHHHHHHHHHHTTCCEEEEECCCSSC
T ss_pred             CccCCEEEEeCCCeEEeC------C----EECcCHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            356899999999999982      2    345789999999999999999999997654

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=99.28  E-value=8.9e-12  Score=94.03  Aligned_cols=60  Identities=22%  Similarity=0.432  Sum_probs=53.4

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      |+|+|+||+||||++      ++.   .+.+.+.++|++|+++|+++++||||+... +...++.+++..
T Consensus         4 m~kli~~DlDGTLl~------~~~---~i~~~~~~aL~~l~~~Gi~vviaTGR~~~~-~~~~~~~l~l~~   63 (282)
T 1rkq_A            4 AIKLIAIDMDGTLLL------PDH---TISPAVKNAIAAARARGVNVVLTTGRPYAG-VHNYLKELHMEQ   63 (282)
T ss_dssp             CCCEEEECCCCCCSC------TTS---CCCHHHHHHHHHHHHTTCEEEEECSSCGGG-THHHHHHTTCCS
T ss_pred             cceEEEEeCCCCCCC------CCC---cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCCC
Confidence            589999999999998      343   577899999999999999999999999888 689999998875

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=99.28  E-value=7.7e-12  Score=85.77  Aligned_cols=63  Identities=17%  Similarity=0.133  Sum_probs=49.1

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC---ChhHHHHHHHHcCCCC
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHKLGIHS   90 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~---~~~~~~~~l~~l~l~~   90 (156)
                      .|+|+||+||||+++     .......+.|++.++|+.|+++|++++++|||+   ... +...++.+++..
T Consensus         3 ~k~i~~DlDGTL~~~-----~~~~i~~~~~~~~~al~~l~~~G~~iii~TgR~~~~~~~-~~~~l~~~gi~~   68 (142)
T 2obb_A            3 AMTIAVDFDGTIVEH-----RYPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDE-AIEWCRARGLEF   68 (142)
T ss_dssp             CCEEEECCBTTTBCS-----CTTSCCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHH-HHHHHHTTTCCC
T ss_pred             CeEEEEECcCCCCCC-----CCccccccCHHHHHHHHHHHHCCCEEEEEeCCCcccHHH-HHHHHHHcCCCe
Confidence            579999999999983     112233467899999999999999999999998   344 466677777753

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=99.25  E-value=8.4e-12  Score=94.10  Aligned_cols=64  Identities=31%  Similarity=0.420  Sum_probs=54.2

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      ..++|+|+|||||||++      +..   .+.+.+.++|++++++|++++++|||+... +..+++.+++..++
T Consensus        18 ~~~~kli~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~G~~v~iaTGR~~~~-~~~~~~~l~~~~~~   81 (285)
T 3pgv_A           18 QGMYQVVASDLDGTLLS------PDH---FLTPYAKETLKLLTARGINFVFATGRHYID-VGQIRDNLGIRSYM   81 (285)
T ss_dssp             ---CCEEEEECCCCCSC------TTS---CCCHHHHHHHHHHHTTTCEEEEECSSCGGG-GHHHHHHHCSCCEE
T ss_pred             cCcceEEEEeCcCCCCC------CCC---cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHhcCCCccE
Confidence            34689999999999998      444   578899999999999999999999999988 69999999987543

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=99.25  E-value=4.6e-13  Score=97.51  Aligned_cols=40  Identities=5%  Similarity=-0.116  Sum_probs=31.4

Q ss_pred             ccCCCCCCHHHHHHHHHHhCCCCcCceeEeeeh-hhhHHHhh
Q 031610          100 MYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQ-QVMIEMFQ  140 (156)
Q Consensus       100 ~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~  140 (156)
                      .....||+|..+..+++.+|++|+++.+|+ -+ .+++.|.+
T Consensus       171 ~~~~~kpk~~~~~~~~~~lgi~~~~~i~iG-D~~~nDi~~~~  211 (250)
T 2c4n_A          171 PFYVGKPSPWIIRAALNKMQAHSEETVIVG-DNLRTDILAGF  211 (250)
T ss_dssp             CEECSTTSTHHHHHHHHHHTCCGGGEEEEE-SCTTTHHHHHH
T ss_pred             ceEeCCCCHHHHHHHHHHcCCCcceEEEEC-CCchhHHHHHH
Confidence            345689999999999999999999987655 34 46677764

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=99.24  E-value=3.4e-12  Score=92.04  Aligned_cols=118  Identities=13%  Similarity=0.032  Sum_probs=86.7

Q ss_pred             CCCceEEEecCCccccccccccc----------cC----CCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCY----------ED----EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~----------~~----~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~   85 (156)
                      ...+.+++||||||+........          ++    -...++||+.++|+.|++. ++++|+|++.... +..+++.
T Consensus        26 ~~k~~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~g~~~~~~v~~RPgv~efL~~l~~~-~~i~I~Tss~~~~-a~~vl~~  103 (195)
T 2hhl_A           26 YGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQL-FECVLFTASLAKY-ADPVADL  103 (195)
T ss_dssp             TTCCEEEECCBTTTEEEESSCCTTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHHH-HHHHHHH
T ss_pred             CCCeEEEEccccceEcccccCCCCccceeeeecCCceeeEEEEeCcCHHHHHHHHHcC-CeEEEEcCCCHHH-HHHHHHH
Confidence            35688999999999975221100          00    1235799999999999998 9999999999988 8999999


Q ss_pred             cCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhccccc
Q 031610           86 LGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHSM  145 (156)
Q Consensus        86 l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  145 (156)
                      +++..+|..+++.++....|   ..+...++.+|.+++++.   ++++.-..+-.+....
T Consensus       104 ld~~~~f~~~l~rd~~~~~k---~~~lK~L~~Lg~~~~~~v---ivDDs~~~~~~~~~ng  157 (195)
T 2hhl_A          104 LDRWGVFRARLFRESCVFHR---GNYVKDLSRLGRELSKVI---IVDNSPASYIFHPENA  157 (195)
T ss_dssp             HCCSSCEEEEECGGGCEEET---TEEECCGGGSSSCGGGEE---EEESCGGGGTTCGGGE
T ss_pred             hCCcccEEEEEEcccceecC---CceeeeHhHhCCChhHEE---EEECCHHHhhhCccCc
Confidence            99999999888777666554   456777888898888764   3445444333333333

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=99.23  E-value=1.7e-11  Score=91.82  Aligned_cols=66  Identities=21%  Similarity=0.298  Sum_probs=47.3

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~   96 (156)
                      ++|+|+|||||||++      +..   .+.+.+.++|++++++|++++++|||+... +..+++.+++......++
T Consensus         4 ~~kli~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~~~~i   69 (279)
T 3mpo_A            4 TIKLIAIDIDGTLLN------EKN---ELAQATIDAVQAAKAQGIKVVLCTGRPLTG-VQPYLDAMDIDGDDQYAI   69 (279)
T ss_dssp             -CCEEEECC--------------------CHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCCSSSCEEE
T ss_pred             ceEEEEEcCcCCCCC------CCC---cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCCCCCEEE
Confidence            489999999999998      444   578899999999999999999999999888 699999999875433433

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.22  E-value=1.2e-10  Score=88.42  Aligned_cols=111  Identities=13%  Similarity=0.052  Sum_probs=78.3

Q ss_pred             CCceEEEecCCccccccccc---cccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--HHHHHHHH--------cC
Q 031610           21 LPRLVVFDLDYTLWPFYCEC---CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHK--------LG   87 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~---~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--~~~~~l~~--------l~   87 (156)
                      ..+.+++|+|||+.+.....   +..-....++||+.++|+.|+++|++++++||++...  .+...++.        +|
T Consensus       158 ~~~~i~iD~dgtl~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l~~~~~~~~~~~~  237 (301)
T 1ltq_A          158 KPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAG  237 (301)
T ss_dssp             SCEEEEEETBTTTBCCSSCCTTCGGGGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTC
T ss_pred             ccceEEEeCCCCcccccCCCchhhhhccccCCChHHHHHHHHHHHCCCeEEEEeCCCcccchhHHHHHHhcccccccccC
Confidence            34789999999987632110   0011123589999999999999999999999998543  02566777        88


Q ss_pred             CCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhH
Q 031610           88 IHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMI  136 (156)
Q Consensus        88 l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~  136 (156)
                      +  +|+.+++.++. ..||+|.++..+++.++..+.+.+  +|++|...
T Consensus       238 ~--~~~~~~~~~~~-~~kp~p~~~~~~~~~~~~~~~~~~--~~vgD~~~  281 (301)
T 1ltq_A          238 V--PLVMQCQREQG-DTRKDDVVKEEIFWKHIAPHFDVK--LAIDDRTQ  281 (301)
T ss_dssp             C--CCSEEEECCTT-CCSCHHHHHHHHHHHHTTTTCEEE--EEEECCHH
T ss_pred             C--CchheeeccCC-CCcHHHHHHHHHHHHHhccccceE--EEeCCcHH
Confidence            8  57777766554 468999999999999977664432  23444433

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=99.22  E-value=1.4e-11  Score=91.71  Aligned_cols=66  Identities=17%  Similarity=0.093  Sum_probs=53.2

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcC---CCChhHHHHHHHHcCCCCCCceEEE
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR---SPAPDIAKTFLHKLGIHSMFVPMVV   97 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~---~~~~~~~~~~l~~l~l~~~f~~~~~   97 (156)
                      ++|+|+||+||||++      ..    .+.|++.++|++|+++|++++++||   |+... ....++.+|+......+++
T Consensus         7 ~~kli~~DlDGTLl~------~~----~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~-~~~~l~~lg~~~~~~~ii~   75 (268)
T 3qgm_A            7 DKKGYIIDIDGVIGK------SV----TPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRI-LLERLRSFGLEVGEDEILV   75 (268)
T ss_dssp             CCSEEEEECBTTTEE------TT----EECHHHHHHHHHHHHTTCEEEEEECCSSSCHHH-HHHHHHHTTCCCCGGGEEE
T ss_pred             cCCEEEEcCcCcEEC------CC----EeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHH-HHHHHHHCCCCCCHHHeeC
Confidence            489999999999998      22    3678999999999999999999999   45555 5677888888765555544

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=99.22  E-value=1.7e-11  Score=89.84  Aligned_cols=61  Identities=13%  Similarity=0.095  Sum_probs=52.8

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      |+|+|+||+||||++      +..   .+.+.+.++|++|+++|++++++|||+... +..+++.+++..+
T Consensus         2 m~kli~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~G~~v~i~TGR~~~~-~~~~~~~l~~~~~   62 (231)
T 1wr8_A            2 KIKAISIDIDGTITY------PNR---MIHEKALEAIRRAESLGIPIMLVTGNTVQF-AEAASILIGTSGP   62 (231)
T ss_dssp             CCCEEEEESTTTTBC------TTS---CBCHHHHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHHHTCCSC
T ss_pred             ceeEEEEECCCCCCC------CCC---cCCHHHHHHHHHHHHCCCEEEEEcCCChhH-HHHHHHHcCCCCe
Confidence            479999999999998      333   577899999999999999999999999887 6888888887653

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=99.20  E-value=1.7e-12  Score=92.63  Aligned_cols=66  Identities=6%  Similarity=-0.070  Sum_probs=53.5

Q ss_pred             CcccCCcHHHHHHHHHHC-CCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcC
Q 031610           46 IPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKR  124 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~-G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~  124 (156)
                      ...++||+.++|+.|+++ |++++|+||++... +...++.+|+   |+.++++              .+++++++.|++
T Consensus        71 ~~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~-~~~~l~~~gl---f~~i~~~--------------~~~~~~~~~~~~  132 (193)
T 2i7d_A           71 DLEPIPGALDAVREMNDLPDTQVFICTSPLLKY-HHCVGEKYRW---VEQHLGP--------------QFVERIILTRDK  132 (193)
T ss_dssp             TCCBCTTHHHHHHHHHTSTTEEEEEEECCCSSC-TTTHHHHHHH---HHHHHCH--------------HHHTTEEECSCG
T ss_pred             cCccCcCHHHHHHHHHhCCCCeEEEEeCCChhh-HHHHHHHhCc---hhhhcCH--------------HHHHHcCCCccc
Confidence            346899999999999999 99999999999877 6888888887   6554432              267888999988


Q ss_pred             ceeEe
Q 031610          125 SCSIF  129 (156)
Q Consensus       125 ~~~v~  129 (156)
                      +.+|+
T Consensus       133 ~~~vg  137 (193)
T 2i7d_A          133 TVVLG  137 (193)
T ss_dssp             GGBCC
T ss_pred             EEEEC
Confidence            76543

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}

Probab=99.20  E-value=1.7e-10  Score=85.09  Aligned_cols=61  Identities=16%  Similarity=0.151  Sum_probs=45.7

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEc---CCCChhHHHHHHHHcCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS---RSPAPDIAKTFLHKLGI   88 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T---~~~~~~~~~~~l~~l~l   88 (156)
                      ++|+|+||+||||++.      ......+.+++.++++.++++|++++++|   +++... +...+..+|+
T Consensus        11 ~~k~i~fDlDGTLl~s------~~~~~~~~~~~~~a~~~l~~~G~~~~~~t~~~gr~~~~-~~~~l~~~g~   74 (271)
T 2x4d_A           11 GVRGVLLDISGVLYDS------GAGGGTAIAGSVEAVARLKRSRLKVRFCTNESAASRAE-LVGQLQRLGF   74 (271)
T ss_dssp             TCCEEEECCBTTTEEC------CTTTCEECTTHHHHHHHHHHSSSEEEEECCCCSSCHHH-HHHHHHHTTC
T ss_pred             cCCEEEEeCCCeEEec------CCCCCccCcCHHHHHHHHHHCCCcEEEEECCCCCCHHH-HHHHHHHCCC
Confidence            5899999999999983      20011477889999999999999999999   666554 4555555443

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=99.20  E-value=1.4e-11  Score=93.81  Aligned_cols=57  Identities=30%  Similarity=0.405  Sum_probs=44.1

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCC---CChhHHHHHHHHcCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---PAPDIAKTFLHKLGI   88 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~---~~~~~~~~~l~~l~l   88 (156)
                      ++|+|+||+||||++.      .    .++|++.++|+.|+++|++++++||+   +... ....++.+|+
T Consensus        20 ~~k~i~~D~DGTL~~~------~----~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~-~~~~~~~~g~   79 (306)
T 2oyc_A           20 RAQGVLFDCDGVLWNG------E----RAVPGAPELLERLARAGKAALFVSNNSRRARPE-LALRFARLGF   79 (306)
T ss_dssp             HCSEEEECSBTTTEET------T----EECTTHHHHHHHHHHTTCEEEEEECCCSSCHHH-HHHHHHHTTC
T ss_pred             hCCEEEECCCCcEecC------C----ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHH-HHHHHHhcCC
Confidence            5789999999999972      2    47799999999999999999999974   3333 3444444444

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=99.20  E-value=3.5e-11  Score=90.01  Aligned_cols=59  Identities=25%  Similarity=0.355  Sum_probs=52.6

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~   89 (156)
                      ++|+|+||+||||++      +..   .+.+.+.++|++++++|++++++|||+... +...++.+++.
T Consensus         4 ~~kli~fDlDGTLl~------~~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~   62 (279)
T 4dw8_A            4 KYKLIVLDLDGTLTN------SKK---EISSRNRETLIRIQEQGIRLVLASGRPTYG-IVPLANELRMN   62 (279)
T ss_dssp             CCCEEEECCCCCCSC------TTS---CCCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTGG
T ss_pred             cceEEEEeCCCCCCC------CCC---ccCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHHhCCC
Confidence            379999999999998      444   578999999999999999999999999888 68889999874

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=99.19  E-value=2.8e-11  Score=90.62  Aligned_cols=59  Identities=22%  Similarity=0.123  Sum_probs=51.9

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      |+|+|+|||||||++      +.+   .+.+.+.++|++ +++|++++++|||+... +...++.++++.
T Consensus         1 mikli~~DlDGTLl~------~~~---~i~~~~~~al~~-~~~Gi~v~iaTGR~~~~-~~~~~~~l~~~~   59 (268)
T 1nf2_A            1 MYRVFVFDLDGTLLN------DNL---EISEKDRRNIEK-LSRKCYVVFASGRMLVS-TLNVEKKYFKRT   59 (268)
T ss_dssp             CBCEEEEECCCCCSC------TTS---CCCHHHHHHHHH-HTTTSEEEEECSSCHHH-HHHHHHHHSSSC
T ss_pred             CccEEEEeCCCcCCC------CCC---ccCHHHHHHHHH-HhCCCEEEEECCCChHH-HHHHHHHhCCCC
Confidence            579999999999998      443   477889999999 99999999999999888 688899998865

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=99.19  E-value=3.4e-11  Score=90.64  Aligned_cols=60  Identities=28%  Similarity=0.365  Sum_probs=51.9

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      .+|+|++||||||++      ++.   .+.+.+.++|++|+++|+++++||||+... +..+++.+++..
T Consensus         8 ~~~li~~DlDGTLl~------~~~---~~~~~~~~~l~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~   67 (275)
T 1xvi_A            8 QPLLVFSDLDGTLLD------SHS---YDWQPAAPWLTRLREANVPVILCSSKTSAE-MLYLQKTLGLQG   67 (275)
T ss_dssp             CCEEEEEECTTTTSC------SSC---CSCCTTHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHHTTCTT
T ss_pred             CceEEEEeCCCCCCC------CCC---cCCHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCC
Confidence            368999999999998      333   355778999999999999999999999888 789999999875

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=99.19  E-value=2.6e-11  Score=91.57  Aligned_cols=61  Identities=25%  Similarity=0.340  Sum_probs=52.5

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      |+|+|+|||||||++      +++   .+.+.+.++|++|+++|++++++|||+... +...++.+++..+
T Consensus         3 mikli~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~   63 (288)
T 1nrw_A            3 AMKLIAIDLDGTLLN------SKH---QVSLENENALRQAQRDGIEVVVSTGRAHFD-VMSIFEPLGIKTW   63 (288)
T ss_dssp             -CCEEEEECCCCCSC------TTS---CCCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHGGGTCCCE
T ss_pred             ceEEEEEeCCCCCCC------CCC---ccCHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCCc
Confidence            589999999999998      443   477889999999999999999999999888 6888888887653

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=99.17  E-value=2.2e-12  Score=92.41  Aligned_cols=63  Identities=8%  Similarity=-0.042  Sum_probs=52.0

Q ss_pred             cccCCcHHHHHHHHHHC-CCeEEEEcCCCChhHHHHHHHHcCCCC-CCceEEEecccCCCCCCHHHHHHHHHHhCCCCcC
Q 031610           47 PYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHS-MFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKR  124 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~-G~~v~i~T~~~~~~~~~~~l~~l~l~~-~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~  124 (156)
                      ..++||+.++|+.|+++ |++++|+||++... +...++.+++.. +|+                  ..+++++++.|++
T Consensus        74 ~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~-~~~~l~~~~l~~~~f~------------------~~~~~~l~~~~~~  134 (197)
T 1q92_A           74 LEPLPGAVEAVKEMASLQNTDVFICTSPIKMF-KYCPYEKYAWVEKYFG------------------PDFLEQIVLTRDK  134 (197)
T ss_dssp             CCBCTTHHHHHHHHHHSTTEEEEEEECCCSCC-SSHHHHHHHHHHHHHC------------------GGGGGGEEECSCS
T ss_pred             CCcCcCHHHHHHHHHhcCCCeEEEEeCCccch-HHHHHHHhchHHHhch------------------HHHHHHhccCCcc
Confidence            46899999999999999 99999999999877 588888888877 774                  4566777888877


Q ss_pred             ceeE
Q 031610          125 SCSI  128 (156)
Q Consensus       125 ~~~v  128 (156)
                      +..|
T Consensus       135 ~~~v  138 (197)
T 1q92_A          135 TVVS  138 (197)
T ss_dssp             TTSC
T ss_pred             EEEE
Confidence            7654

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=99.17  E-value=1.3e-11  Score=87.90  Aligned_cols=118  Identities=14%  Similarity=0.037  Sum_probs=85.0

Q ss_pred             CCCceEEEecCCccccccccccc----------cC----CCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCY----------ED----EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~----------~~----~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~   85 (156)
                      ...+.+++|||+||+........          ++    ....++||+.++|+.|++. ++++|+|+++... +..+++.
T Consensus        13 ~~k~~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~~~~~~~~v~~rPg~~efL~~l~~~-~~i~I~T~~~~~~-a~~vl~~   90 (181)
T 2ght_A           13 SDKICVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL-FECVLFTASLAKY-ADPVADL   90 (181)
T ss_dssp             TTSCEEEECCBTTTEEEESSCCSSCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHHH-HHHHHHH
T ss_pred             CCCeEEEECCCCCeECCcccCCCCccceeeeeeCCeeEEEEEEeCCCHHHHHHHHHhC-CCEEEEcCCCHHH-HHHHHHH
Confidence            35689999999999974321100          00    1246899999999999997 9999999999998 8999999


Q ss_pred             cCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhccccc
Q 031610           86 LGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHSM  145 (156)
Q Consensus        86 l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  145 (156)
                      ++...+|...++.++....|   ..+...++.+|.+++++.   ++++.-..+-.+....
T Consensus        91 ld~~~~f~~~~~rd~~~~~k---~~~~k~L~~Lg~~~~~~v---ivdDs~~~~~~~~~ng  144 (181)
T 2ght_A           91 LDKWGAFRARLFRESCVFHR---GNYVKDLSRLGRDLRRVL---ILDNSPASYVFHPDNA  144 (181)
T ss_dssp             HCTTCCEEEEECGGGSEEET---TEEECCGGGTCSCGGGEE---EECSCGGGGTTCTTSB
T ss_pred             HCCCCcEEEEEeccCceecC---CcEeccHHHhCCCcceEE---EEeCCHHHhccCcCCE
Confidence            99999998888776655433   346667788888888764   4445443333333333

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=99.17  E-value=2.6e-11  Score=92.50  Aligned_cols=59  Identities=17%  Similarity=0.203  Sum_probs=51.9

Q ss_pred             CCceEEEecCCccccccccccc-cCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH--HHcC-CC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCY-EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL--HKLG-IH   89 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~-~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l--~~l~-l~   89 (156)
                      ++|+|+|||||||++      + +.   .+.+.++++|++|+++|+++++||||+... +..++  +.++ +.
T Consensus        26 ~ikli~~DlDGTLl~------~~~~---~is~~~~~al~~l~~~Gi~v~iaTGR~~~~-~~~~~~~~~l~~~~   88 (301)
T 2b30_A           26 DIKLLLIDFDGTLFV------DKDI---KVPSENIDAIKEAIEKGYMVSICTGRSKVG-ILSAFGEENLKKMN   88 (301)
T ss_dssp             CCCEEEEETBTTTBC------CTTT---CSCHHHHHHHHHHHHHTCEEEEECSSCHHH-HHHHHCHHHHHHHT
T ss_pred             cccEEEEECCCCCcC------CCCC---ccCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHhhHHhhcccc
Confidence            479999999999998      4 33   577899999999999999999999999887 68888  8887 76

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=99.16  E-value=4.3e-11  Score=90.01  Aligned_cols=61  Identities=20%  Similarity=0.281  Sum_probs=53.2

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      ++|+|+|||||||++      +..   .+.+.+.++|++++++|++++++|||+... +..+++.+++..+
T Consensus         5 ~~kli~fDlDGTLl~------~~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~~~~~~~   65 (290)
T 3dnp_A            5 SKQLLALNIDGALLR------SNG---KIHQATKDAIEYVKKKGIYVTLVTNRHFRS-AQKIAKSLKLDAK   65 (290)
T ss_dssp             -CCEEEECCCCCCSC------TTS---CCCHHHHHHHHHHHHTTCEEEEBCSSCHHH-HHHHHHHTTCCSC
T ss_pred             cceEEEEcCCCCCCC------CCC---ccCHHHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCCCe
Confidence            479999999999998      444   578899999999999999999999999888 6888999988743

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=99.15  E-value=2e-10  Score=86.12  Aligned_cols=113  Identities=11%  Similarity=-0.008  Sum_probs=74.3

Q ss_pred             CCCCCceEEEecCCcccccccc----------ccc-------cCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCCh---h
Q 031610           18 FENLPRLVVFDLDYTLWPFYCE----------CCY-------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP---D   77 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~----------~~~-------~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~---~   77 (156)
                      .....++|+||+||||++....          ...       .....+++||+.++|+.|+++|++++++|||+..   .
T Consensus        54 ~~~~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~~~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~~~r~  133 (262)
T 3ocu_A           54 AKGKKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKS  133 (262)
T ss_dssp             CTTCEEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHHTCCEECTTHHHHHHHHHHTTEEEEEEEEEETTTTHH
T ss_pred             cCCCCeEEEEECCCcCCCCchhhhhhccccccCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCccchHH
Confidence            4456679999999999986321          010       1224579999999999999999999999999764   2


Q ss_pred             HHHHHHHHcCCCCCCc-eEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610           78 IAKTFLHKLGIHSMFV-PMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        78 ~~~~~l~~l~l~~~f~-~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                      .....|+.+|+..++. .++....   ...+......+.+. |.     ..+++++|+...+-
T Consensus       134 ~T~~~L~~lGi~~~~~~~Lilr~~---~~~K~~~r~~l~~~-Gy-----~iv~~vGD~~~Dl~  187 (262)
T 3ocu_A          134 GTIDDMKRLGFNGVEESAFYLKKD---KSAKAARFAEIEKQ-GY-----EIVLYVGDNLDDFG  187 (262)
T ss_dssp             HHHHHHHHHTCSCCSGGGEEEESS---CSCCHHHHHHHHHT-TE-----EEEEEEESSGGGGC
T ss_pred             HHHHHHHHcCcCcccccceeccCC---CCChHHHHHHHHhc-CC-----CEEEEECCChHHhc
Confidence            3688899999987663 3332222   12334444445443 32     13666777655443

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=99.14  E-value=4e-11  Score=89.20  Aligned_cols=60  Identities=18%  Similarity=0.198  Sum_probs=52.7

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      |+|+|+|||||||++      +..   .+.+.+.++|++++++|++++++|||+... +...++.++++.
T Consensus         4 M~kli~fDlDGTLl~------~~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~~~~~~   63 (274)
T 3fzq_A            4 LYKLLILDIDGTLRD------EVY---GIPESAKHAIRLCQKNHCSVVICTGRSMGT-IQDDVLSLGVDG   63 (274)
T ss_dssp             CCCEEEECSBTTTBB------TTT---BCCHHHHHHHHHHHHTTCEEEEECSSCTTT-SCHHHHTTCCSE
T ss_pred             cceEEEEECCCCCCC------CCC---cCCHHHHHHHHHHHHCCCEEEEEeCCChHH-HHHHHHHcCCCE
Confidence            689999999999998      444   577899999999999999999999999888 688888888764

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=99.14  E-value=6.2e-11  Score=87.86  Aligned_cols=59  Identities=29%  Similarity=0.345  Sum_probs=51.7

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      +|+|+|||||||++      +..   .+.+.+.++|++++++|++++++|||+... +...++.++++.
T Consensus         3 ~kli~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~G~~~~~aTGR~~~~-~~~~~~~l~~~~   61 (258)
T 2pq0_A            3 RKIVFFDIDGTLLD------EQK---QLPLSTIEAVRRLKQSGVYVAIATGRAPFM-FEHVRKQLGIDS   61 (258)
T ss_dssp             CCEEEECTBTTTBC------TTS---CCCHHHHHHHHHHHHTTCEEEEECSSCGGG-SHHHHHHHTCCC
T ss_pred             ceEEEEeCCCCCcC------CCC---ccCHHHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHhcCCCE
Confidence            68999999999998      343   477889999999999999999999999887 688888888764

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=99.12  E-value=5.2e-11  Score=89.73  Aligned_cols=64  Identities=19%  Similarity=0.253  Sum_probs=52.8

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      ..++|+|+|||||||++      +...  .+.+.+.++|++|+++|+++++||||+... +..+++.++...+
T Consensus        18 ~~~~kli~~DlDGTLl~------~~~~--~i~~~~~~al~~l~~~G~~v~iaTGR~~~~-~~~~~~~l~~~~~   81 (283)
T 3dao_A           18 QGMIKLIATDIDGTLVK------DGSL--LIDPEYMSVIDRLIDKGIIFVVCSGRQFSS-EFKLFAPIKHKLL   81 (283)
T ss_dssp             -CCCCEEEECCBTTTBS------TTCS--CCCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHTGGGGGGCE
T ss_pred             ccCceEEEEeCcCCCCC------CCCC--cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCcE
Confidence            34689999999999998      3321  467899999999999999999999999888 6888888776543

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=99.12  E-value=9.8e-12  Score=92.53  Aligned_cols=59  Identities=19%  Similarity=0.202  Sum_probs=48.7

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSN  107 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~  107 (156)
                      .++|++.++|+.|+++|++++++||++... +...++.+|+..+|+.+++.+.....||.
T Consensus       144 ~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~~~~~gl~~~f~~~~~~~k~~~~k~~  202 (280)
T 3skx_A          144 RIRPESREAISKLKAIGIKCMMLTGDNRFV-AKWVAEELGLDDYFAEVLPHEKAEKVKEV  202 (280)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEECSCCGGGHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCChhHhHhcCHHHHHHHHHHH
Confidence            588999999999999999999999999887 79999999999888877655433333333

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=99.12  E-value=1.2e-10  Score=86.60  Aligned_cols=48  Identities=21%  Similarity=0.245  Sum_probs=42.5

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~   77 (156)
                      ++|+|+||+||||++      +.+   .+.+.++++|++|+++|+++++||||+...
T Consensus         3 ~~kli~~DlDGTLl~------~~~---~i~~~~~~~l~~l~~~g~~~~iaTGR~~~~   50 (246)
T 3f9r_A            3 KRVLLLFDVDGTLTP------PRL---CQTDEMRALIKRARGAGFCVGTVGGSDFAK   50 (246)
T ss_dssp             CSEEEEECSBTTTBS------TTS---CCCHHHHHHHHHHHHTTCEEEEECSSCHHH
T ss_pred             CceEEEEeCcCCcCC------CCC---ccCHHHHHHHHHHHHCCCEEEEECCCCHHH
Confidence            379999999999998      444   577899999999999999999999999665

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=99.12  E-value=2.9e-10  Score=85.15  Aligned_cols=109  Identities=14%  Similarity=0.078  Sum_probs=70.8

Q ss_pred             CCceEEEecCCcccccccc----------ccc-------cCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCCh---hHHH
Q 031610           21 LPRLVVFDLDYTLWPFYCE----------CCY-------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP---DIAK   80 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~----------~~~-------~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~---~~~~   80 (156)
                      ..++|+||+||||++....          ...       .....+++||+.++|+.|+++|++++++|||+..   ....
T Consensus        57 ~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~g~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~  136 (260)
T 3pct_A           57 KKKAVVVDLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTV  136 (260)
T ss_dssp             -CEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHTTCCEECTTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHH
T ss_pred             CCCEEEEECCccCcCChhHHHhhcccCCCCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Confidence            3459999999999986321          010       1234579999999999999999999999999764   2268


Q ss_pred             HHHHHcCCCCCCc-eEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHH
Q 031610           81 TFLHKLGIHSMFV-PMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEM  138 (156)
Q Consensus        81 ~~l~~l~l~~~f~-~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  138 (156)
                      ..|+.+|+..++. .++...+    ++........+...+.     ..+++++|+...+
T Consensus       137 ~~L~~lGi~~~~~~~Lilr~~----~~~K~~~r~~L~~~gy-----~iv~~iGD~~~Dl  186 (260)
T 3pct_A          137 DDMKRLGFTGVNDKTLLLKKD----KSNKSVRFKQVEDMGY-----DIVLFVGDNLNDF  186 (260)
T ss_dssp             HHHHHHTCCCCSTTTEEEESS----CSSSHHHHHHHHTTTC-----EEEEEEESSGGGG
T ss_pred             HHHHHcCcCccccceeEecCC----CCChHHHHHHHHhcCC-----CEEEEECCChHHc
Confidence            8899999988764 2332221    2333444444443332     2256666664433

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=99.11  E-value=2.8e-11  Score=90.69  Aligned_cols=60  Identities=22%  Similarity=0.219  Sum_probs=48.6

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcH-HHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHA-KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~-~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      ++|+|+|||||||++      +.+   .+.+.+ .++|++|+++|+++++||||+... +...++.+++..
T Consensus         2 ~~kli~~DlDGTLl~------~~~---~i~~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~   62 (271)
T 1rlm_A            2 AVKVIVTDMDGTFLN------DAK---TYNQPRFMAQYQELKKRGIKFVVASGNQYYQ-LISFFPELKDEI   62 (271)
T ss_dssp             CCCEEEECCCCCCSC------TTS---CCCHHHHHHHHHHHHHHTCEEEEECSSCHHH-HGGGCTTTTTTS
T ss_pred             CccEEEEeCCCCCCC------CCC---cCCHHHHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHhcCCCC
Confidence            478999999999998      443   466774 899999999999999999999776 566666665443

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=99.08  E-value=6.3e-11  Score=88.15  Aligned_cols=61  Identities=18%  Similarity=0.303  Sum_probs=49.0

Q ss_pred             CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610           18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l   88 (156)
                      ...|+|+|+|||||||++.     +..   .+.+.+.++|++++++|++++++|||+... . ..+..+++
T Consensus         8 ~~~miKli~~DlDGTLl~~-----~~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~-~~~~~l~~   68 (268)
T 3r4c_A            8 GSHMIKVLLLDVDGTLLSF-----ETH---KVSQSSIDALKKVHDSGIKIVIATGRAASD-L-HEIDAVPY   68 (268)
T ss_dssp             TCSCCCEEEECSBTTTBCT-----TTC---SCCHHHHHHHHHHHHTTCEEEEECSSCTTC-C-GGGTTSCC
T ss_pred             CCCceEEEEEeCCCCCcCC-----CCC---cCCHHHHHHHHHHHHCCCEEEEEcCCChHH-h-HHHHhcCC
Confidence            3457999999999999982     122   577899999999999999999999999776 3 44556665

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=99.06  E-value=1.3e-10  Score=91.73  Aligned_cols=82  Identities=15%  Similarity=0.083  Sum_probs=71.6

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc--eEEEecccC-----------CCCCCHHHHHH
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV--PMVVIYMYT-----------KDSSNASSSES  113 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~--~~~~~~~~~-----------~~kp~p~~~~~  113 (156)
                      ..++||+.++|+.|+++|++++|+||++... +...++.+|+..+|+  .++++++..           ..||+|.++..
T Consensus       214 ~~l~pGv~elL~~Lk~~Gi~laIvTn~~~~~-~~~~L~~lgL~~~Fd~~~Ivs~ddv~~~~~~~~~~kp~~KP~P~~~~~  292 (384)
T 1qyi_A          214 LRPVDEVKVLLNDLKGAGFELGIATGRPYTE-TVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIA  292 (384)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHH
T ss_pred             CCcCcCHHHHHHHHHhCCCEEEEEeCCcHHH-HHHHHHHcCChHhcCCCEEEecccccccccccccccCCCCCCHHHHHH
Confidence            3688999999999999999999999999877 789999999999998  777766554           38999999999


Q ss_pred             HHHHhC--------------CCCcCceeEe
Q 031610          114 TCAIFH--------------FHPKRSCSIF  129 (156)
Q Consensus       114 ~~~~~~--------------~~~~~~~~v~  129 (156)
                      +++.++              +.|+++.+|+
T Consensus       293 a~~~lg~~~~~~~~~~~~~~v~p~e~l~VG  322 (384)
T 1qyi_A          293 ALYGNNRDKYESYINKQDNIVNKDDVFIVG  322 (384)
T ss_dssp             HHHCCCGGGHHHHHHCCTTCSCTTTEEEEE
T ss_pred             HHHHcCCccccccccccccCCCCcCeEEEc
Confidence            999998              7888876544

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=99.06  E-value=1.6e-10  Score=85.75  Aligned_cols=60  Identities=27%  Similarity=0.366  Sum_probs=49.7

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      |+|+|+|||||||+ .     . .   .+ +.++++|++|+++|++++++|||+... +...++.+++..++
T Consensus         1 Mikli~~DlDGTLl-~-----~-~---~~-~~~~~~l~~l~~~g~~~~i~Tgr~~~~-~~~~~~~~~~~~~~   60 (249)
T 2zos_A            1 MIRLIFLDIDKTLI-P-----G-Y---EP-DPAKPIIEELKDMGFEIIFNSSKTRAE-QEYYRKELEVETPF   60 (249)
T ss_dssp             CEEEEEECCSTTTC-T-----T-S---CS-GGGHHHHHHHHHTTEEEEEBCSSCHHH-HHHHHHHHTCCSCE
T ss_pred             CccEEEEeCCCCcc-C-----C-C---Cc-HHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCccE
Confidence            47899999999999 3     1 1   22 348999999999999999999999887 68889999886543

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=99.05  E-value=2.8e-10  Score=76.33  Aligned_cols=49  Identities=14%  Similarity=0.112  Sum_probs=40.2

Q ss_pred             CceEEEecCCccccccccccccCCC---cccCCcHHHHHHHHHHCCCeEEEEcCCCCh
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEI---PYLYPHAKGILEALKEKGIHVAVASRSPAP   76 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~---~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~   76 (156)
                      +|+|+|||||||++.      ....   ..+.+++.++|++|+++|++++++|||+..
T Consensus         1 ik~i~~DlDGTL~~~------~~~~~~~~~~~~~~~~~l~~l~~~Gi~~~iaTGR~~~   52 (126)
T 1xpj_A            1 MKKLIVDLDGTLTQA------NTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMR   52 (126)
T ss_dssp             CCEEEECSTTTTBCC------CCSCGGGCCBCHHHHHHHHHHHHTTCEEEEEECTTTT
T ss_pred             CCEEEEecCCCCCCC------CCCccccCCCCHHHHHHHHHHHhCCCeEEEEeCCChh
Confidence            478999999999973      2110   146789999999999999999999999864

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=99.04  E-value=3.8e-11  Score=84.73  Aligned_cols=89  Identities=19%  Similarity=0.137  Sum_probs=61.4

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc-cCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM-YTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~-~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ..++|++.++|+.|+++|++++++||+.... +... +.+++..++..+.+.+. ....+|.+.....+++.+  .++++
T Consensus        78 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l--~~~~~  153 (201)
T 4ap9_A           78 VNVSPEARELVETLREKGFKVVLISGSFEEV-LEPF-KELGDEFMANRAIFEDGKFQGIRLRFRDKGEFLKRF--RDGFI  153 (201)
T ss_dssp             CCCCHHHHHHHHHHHHTTCEEEEEEEEETTT-SGGG-TTTSSEEEEEEEEEETTEEEEEECCSSCHHHHHGGG--TTSCE
T ss_pred             CCCChhHHHHHHHHHHCCCeEEEEeCCcHHH-HHHH-HHcCchhheeeEEeeCCceECCcCCccCHHHHHHhc--CcCcE
Confidence            3688999999999999999999999988776 5777 88898777444443331 111455555566677776  67766


Q ss_pred             eeEeeehhhhHHHhh
Q 031610          126 CSIFMFQQVMIEMFQ  140 (156)
Q Consensus       126 ~~v~~~~~~~~~~~~  140 (156)
                      .+++ -+.+++.|..
T Consensus       154 i~iG-D~~~Di~~~~  167 (201)
T 4ap9_A          154 LAMG-DGYADAKMFE  167 (201)
T ss_dssp             EEEE-CTTCCHHHHH
T ss_pred             EEEe-CCHHHHHHHH
Confidence            5544 3344555553

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=99.04  E-value=8.3e-11  Score=89.46  Aligned_cols=59  Identities=20%  Similarity=0.249  Sum_probs=49.3

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCc-HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPH-AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~-~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~   89 (156)
                      ++|+|+|||||||++      +..   .+.+. +.++|++++++|++++++|||+... +..+++.++..
T Consensus        36 ~iKli~fDlDGTLld------~~~---~i~~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~   95 (304)
T 3l7y_A           36 SVKVIATDMDGTFLN------SKG---SYDHNRFQRILKQLQERDIRFVVASSNPYRQ-LREHFPDCHEQ   95 (304)
T ss_dssp             CCSEEEECCCCCCSC------TTS---CCCHHHHHHHHHHHHHTTCEEEEECSSCHHH-HHTTCTTTGGG
T ss_pred             eeEEEEEeCCCCCCC------CCC---ccCHHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHhCCC
Confidence            589999999999998      443   46677 7899999999999999999999877 57776666654

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=99.00  E-value=7.6e-10  Score=83.14  Aligned_cols=67  Identities=18%  Similarity=0.234  Sum_probs=54.4

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcC---CCChhHHHHHHHHcCCC-CCCceE
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR---SPAPDIAKTFLHKLGIH-SMFVPM   95 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~---~~~~~~~~~~l~~l~l~-~~f~~~   95 (156)
                      +++|+|+||+||||++.      .    .++|++.++|++|+++|++++++||   ++... ....++.+|+. ..+..+
T Consensus        12 ~~~k~i~~D~DGtL~~~------~----~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~-~~~~l~~lg~~~~~~~~i   80 (284)
T 2hx1_A           12 PKYKCIFFDAFGVLKTY------N----GLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQ-LADSYHKLGLFSITADKI   80 (284)
T ss_dssp             GGCSEEEECSBTTTEET------T----EECTTHHHHHHHHHHTTCEEEEEECCCSSCHHH-HHHHHHHTTCTTCCGGGE
T ss_pred             hcCCEEEEcCcCCcCcC------C----eeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHH-HHHHHHHCCcCCCCHhhE
Confidence            46899999999999982      2    4679999999999999999999998   45455 57778889987 666555


Q ss_pred             EE
Q 031610           96 VV   97 (156)
Q Consensus        96 ~~   97 (156)
                      ++
T Consensus        81 i~   82 (284)
T 2hx1_A           81 IS   82 (284)
T ss_dssp             EE
T ss_pred             Ec
Confidence            54

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=98.97  E-value=1.9e-10  Score=85.57  Aligned_cols=55  Identities=27%  Similarity=0.398  Sum_probs=46.5

Q ss_pred             ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~   87 (156)
                      |+|+|||||||++      +++.  .+.+.++++|++|+++|++++++|||+ .. +...++.++
T Consensus         3 kli~~DlDGTLl~------~~~~--~i~~~~~~al~~l~~~G~~~~iaTGR~-~~-~~~~~~~l~   57 (261)
T 2rbk_A            3 KALFFDIDGTLVS------FETH--RIPSSTIEALEAAHAKGLKIFIATGRP-KA-IINNLSELQ   57 (261)
T ss_dssp             CEEEECSBTTTBC------TTTS--SCCHHHHHHHHHHHHTTCEEEEECSSC-GG-GCCSCHHHH
T ss_pred             cEEEEeCCCCCcC------CCCC--cCCHHHHHHHHHHHHCCCEEEEECCCh-HH-HHHHHHHhC
Confidence            8999999999998      3331  277889999999999999999999999 87 577667766

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=98.97  E-value=3.2e-10  Score=85.39  Aligned_cols=91  Identities=8%  Similarity=0.064  Sum_probs=67.8

Q ss_pred             CCcHHHHHHHHHHC-CCeEEEEcCC---------------------CChhHHHHHHHHcCCCCCCceE----------EE
Q 031610           50 YPHAKGILEALKEK-GIHVAVASRS---------------------PAPDIAKTFLHKLGIHSMFVPM----------VV   97 (156)
Q Consensus        50 ~~~~~~~L~~L~~~-G~~v~i~T~~---------------------~~~~~~~~~l~~l~l~~~f~~~----------~~   97 (156)
                      .+++.++++.+++. |+++++.|+.                     .... +...++..++..+|...          .+
T Consensus       124 ~~~v~e~l~~l~~~~g~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  202 (289)
T 3gyg_A          124 KEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQDEINDKKNLLA-IEKICEEYGVSVNINRCNPLAGDPEDSYD  202 (289)
T ss_dssp             HHHHHHHHHHHHHHSSCCCEEGGGTCGGGTTCCEEEECCCHHHHHHHHHH-HHHHHHHHTEEEEEEECCGGGTCCTTEEE
T ss_pred             HHHHHHHHHHHHhhhCceeeecccccccceEEEEEEeccccccchHHHHH-HHHHHHHcCCCEEEEEccccccCCCCceE
Confidence            46788899999887 9999999976                     3344 56777788877666543          44


Q ss_pred             ecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhcc
Q 031610           98 IYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNR  142 (156)
Q Consensus        98 ~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  142 (156)
                      .+.....++++..+..+++.+++.++++.+++ -+.+++.|+.+-
T Consensus       203 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~G-Ds~~D~~~~~~a  246 (289)
T 3gyg_A          203 VDFIPIGTGKNEIVTFMLEKYNLNTERAIAFG-DSGNDVRMLQTV  246 (289)
T ss_dssp             EEEEESCCSHHHHHHHHHHHHTCCGGGEEEEE-CSGGGHHHHTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHcCCChhhEEEEc-CCHHHHHHHHhC
Confidence            44556678999999999999999999876655 455566666543

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=98.92  E-value=1.1e-09  Score=80.74  Aligned_cols=47  Identities=28%  Similarity=0.362  Sum_probs=40.7

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~   77 (156)
                      .+|+|++||||||++      +++   .+.+.++++|++|+++ +++++||||+...
T Consensus         5 ~~kli~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~-i~v~iaTGR~~~~   51 (246)
T 2amy_A            5 GPALCLFDVDGTLTA------PRQ---KITKEMDDFLQKLRQK-IKIGVVGGSDFEK   51 (246)
T ss_dssp             CSEEEEEESBTTTBC------TTS---CCCHHHHHHHHHHTTT-SEEEEECSSCHHH
T ss_pred             CceEEEEECCCCcCC------CCc---ccCHHHHHHHHHHHhC-CeEEEEcCCCHHH
Confidence            468999999999998      443   4778999999999999 9999999998544

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=98.91  E-value=1.2e-09  Score=81.44  Aligned_cols=54  Identities=24%  Similarity=0.340  Sum_probs=43.0

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l   83 (156)
                      ..++|+|++||||||++      +++   .+.+.++++|++|+++ +++++||||+... +...+
T Consensus        10 ~~~~kli~~DlDGTLl~------~~~---~is~~~~~al~~l~~~-i~v~iaTGR~~~~-~~~~l   63 (262)
T 2fue_A           10 RKERVLCLFDVDGTLTP------ARQ---KIDPEVAAFLQKLRSR-VQIGVVGGSDYCK-IAEQL   63 (262)
T ss_dssp             ---CEEEEEESBTTTBS------TTS---CCCHHHHHHHHHHTTT-SEEEEECSSCHHH-HHHHH
T ss_pred             ccCeEEEEEeCccCCCC------CCC---cCCHHHHHHHHHHHhC-CEEEEEcCCCHHH-HHHHH
Confidence            34679999999999998      443   5779999999999999 9999999998665 44444

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=98.88  E-value=9.3e-10  Score=81.17  Aligned_cols=59  Identities=22%  Similarity=0.259  Sum_probs=45.5

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l   86 (156)
                      +|+|++|+||||++...    ......+.+.+.++|++|+++| +++++|||+... +...++.+
T Consensus         1 ikli~~DlDGTLl~~~~----~~~~~~i~~~~~~al~~l~~~g-~v~iaTGR~~~~-~~~~~~~l   59 (239)
T 1u02_A            1 MSLIFLDYDGTLVPIIM----NPEESYADAGLLSLISDLKERF-DTYIVTGRSPEE-ISRFLPLD   59 (239)
T ss_dssp             -CEEEEECBTTTBCCCS----CGGGCCCCHHHHHHHHHHHHHS-EEEEECSSCHHH-HHHHSCSS
T ss_pred             CeEEEEecCCCCcCCCC----CcccCCCCHHHHHHHHHHhcCC-CEEEEeCCCHHH-HHHHhccc
Confidence            47899999999997311    0111257789999999999999 999999999877 57766554

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=98.86  E-value=3.9e-09  Score=78.49  Aligned_cols=65  Identities=25%  Similarity=0.409  Sum_probs=49.1

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHH---HHHcCCCCCCceEEE
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF---LHKLGIHSMFVPMVV   97 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~---l~~l~l~~~f~~~~~   97 (156)
                      +|+++||+||||++.      .    .+.|++.++|++|+++|++++++||++... ...+   ++.+|+....+.+++
T Consensus         1 ik~i~~D~DGtL~~~------~----~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~-~~~~~~~l~~lg~~~~~~~i~~   68 (263)
T 1zjj_A            1 MVAIIFDMDGVLYRG------N----RAIPGVRELIEFLKERGIPFAFLTNNSTKT-PEMYREKLLKMGIDVSSSIIIT   68 (263)
T ss_dssp             CEEEEEECBTTTEET------T----EECTTHHHHHHHHHHHTCCEEEEESCCSSC-HHHHHHHHHTTTCCCCGGGEEE
T ss_pred             CeEEEEeCcCceEeC------C----EeCccHHHHHHHHHHCCCeEEEEeCCCCCC-HHHHHHHHHHCCCCCChhhEEe
Confidence            478999999999972      2    245899999999999999999999998754 3444   444677644444443

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=98.82  E-value=9.5e-09  Score=72.16  Aligned_cols=53  Identities=15%  Similarity=0.153  Sum_probs=37.4

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCC---CChh-HHHHHHHH-cCCCCCCceEEEecc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRS---PAPD-IAKTFLHK-LGIHSMFVPMVVIYM  100 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~---~~~~-~~~~~l~~-l~l~~~f~~~~~~~~  100 (156)
                      .+++||+.++|+.|+++ ++++|+||+   +... .....+.. ++...+++.++++++
T Consensus        68 ~~~~pg~~e~L~~L~~~-~~~~i~T~~~~~~~~~~~~~~~l~~~f~~~~~~~~i~~~~~  125 (180)
T 3bwv_A           68 LDVMPHAQEVVKQLNEH-YDIYIATAAMDVPTSFHDKYEWLLEYFPFLDPQHFVFCGRK  125 (180)
T ss_dssp             CCBCTTHHHHHHHHTTT-SEEEEEECC--CCSHHHHHHHHHHHHCTTSCGGGEEECSCG
T ss_pred             CCCCcCHHHHHHHHHhc-CCEEEEeCCCCcchHHHHHHHHHHHHcCCCCcccEEEeCCc
Confidence            46899999999999885 999999998   3211 12344555 566666777766543

>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*

Probab=98.80  E-value=5.4e-09  Score=77.59  Aligned_cols=54  Identities=28%  Similarity=0.338  Sum_probs=44.7

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      +|+|||||||++      +.    .+.+.+.++|++|+++|++++++|||+... +.    .+++..++
T Consensus         2 li~~DlDGTLl~------~~----~i~~~~~~al~~l~~~Gi~v~iaTGR~~~~-~~----~l~~~~~~   55 (259)
T 3zx4_A            2 IVFTDLDGTLLD------ER----GELGPAREALERLRALGVPVVPVTAKTRKE-VE----ALGLEPPF   55 (259)
T ss_dssp             EEEECCCCCCSC------SS----SSCSTTHHHHHHHHHTTCCEEEBCSSCHHH-HH----HTTCCSSE
T ss_pred             EEEEeCCCCCcC------CC----cCCHHHHHHHHHHHHCCCeEEEEeCCCHHH-HH----HcCCCCcE
Confidence            689999999998      33    366889999999999999999999999766 34    67765543

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=98.72  E-value=6.6e-09  Score=76.73  Aligned_cols=55  Identities=22%  Similarity=0.254  Sum_probs=44.3

Q ss_pred             ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~   89 (156)
                      .+|++||||||++      ++.   .+ +.+.++|++++ +|+++++||||+... +..+++.+++.
T Consensus         4 ~li~~DlDGTLl~------~~~---~~-~~~~~~l~~~~-~gi~v~iaTGR~~~~-~~~~~~~l~l~   58 (244)
T 1s2o_A            4 LLLISDLDNTWVG------DQQ---AL-EHLQEYLGDRR-GNFYLAYATGRSYHS-ARELQKQVGLM   58 (244)
T ss_dssp             EEEEECTBTTTBS------CHH---HH-HHHHHHHHTTG-GGEEEEEECSSCHHH-HHHHHHHHTCC
T ss_pred             eEEEEeCCCCCcC------CHH---HH-HHHHHHHHHhc-CCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence            3899999999998      322   22 56778888865 689999999999888 68888888875

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=98.72  E-value=2e-08  Score=78.41  Aligned_cols=68  Identities=16%  Similarity=0.176  Sum_probs=51.5

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC---hhHHHHHHH-HcCCCCCCceE
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---PDIAKTFLH-KLGIHSMFVPM   95 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~---~~~~~~~l~-~l~l~~~f~~~   95 (156)
                      ++.++++||+||||+++       .   .+.|++.++|+.|+++|++++++||++.   .. ....+. .+|+.-..+.+
T Consensus        11 ~~~~~~l~D~DGvl~~g-------~---~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~-~~~~l~~~lgi~~~~~~i   79 (352)
T 3kc2_A           11 SKKIAFAFDIDGVLFRG-------K---KPIAGASDALKLLNRNKIPYILLTNGGGFSERA-RTEFISSKLDVDVSPLQI   79 (352)
T ss_dssp             -CCEEEEECCBTTTEET-------T---EECTTHHHHHHHHHHTTCCEEEECSCCSSCHHH-HHHHHHHHHTSCCCGGGE
T ss_pred             ccCCEEEEECCCeeEcC-------C---eeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchH-HHHHHHHhcCCCCChhhE
Confidence            36789999999999973       2   5789999999999999999999998863   33 234444 68886555555


Q ss_pred             EEe
Q 031610           96 VVI   98 (156)
Q Consensus        96 ~~~   98 (156)
                      +.+
T Consensus        80 ~ts   82 (352)
T 3kc2_A           80 IQS   82 (352)
T ss_dssp             ECT
T ss_pred             eeh
Confidence            543

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=98.70  E-value=2.2e-08  Score=75.52  Aligned_cols=99  Identities=11%  Similarity=0.049  Sum_probs=73.4

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM  100 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~  100 (156)
                      ..+++++|+|+++.....      ....++||+.++|+.|+++|++++++||++... +...++.+|+..+|+.++    
T Consensus       142 g~~~i~~~~d~~~~~~~~------~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~f~~i~----  210 (287)
T 3a1c_A          142 AKTAVIVARNGRVEGIIA------VSDTLKESAKPAVQELKRMGIKVGMITGDNWRS-AEAISRELNLDLVIAEVL----  210 (287)
T ss_dssp             TCEEEEEEETTEEEEEEE------EECCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEECSCC----
T ss_pred             CCeEEEEEECCEEEEEEE------eccccchhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhCCceeeeecC----
Confidence            457899999999875211      113689999999999999999999999999887 799999999988776543    


Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610          101 YTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus       101 ~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                           |.  ....+++.++.. +++.+|+ -+.+++.+.
T Consensus       211 -----~~--~K~~~~~~l~~~-~~~~~vG-Ds~~Di~~a  240 (287)
T 3a1c_A          211 -----PH--QKSEEVKKLQAK-EVVAFVG-DGINDAPAL  240 (287)
T ss_dssp             -----TT--CHHHHHHHHTTT-CCEEEEE-CTTTCHHHH
T ss_pred             -----hH--HHHHHHHHHhcC-CeEEEEE-CCHHHHHHH
Confidence                 22  236788899888 6655443 233444444

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=98.58  E-value=2.3e-08  Score=72.40  Aligned_cols=100  Identities=11%  Similarity=-0.062  Sum_probs=68.8

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC-CCceEEEe
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVPMVVI   98 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~-~f~~~~~~   98 (156)
                      +..+.+++|||+||+...... ..+-.....||+.++|+.|. +++.++|.|++.... +..+++.++... +|......
T Consensus        32 ~~~~tLVLDLDeTLvh~~~~~-~~~~~v~~RPgl~eFL~~l~-~~yeivI~Tas~~~y-a~~vl~~LDp~~~~f~~rl~R  108 (204)
T 3qle_A           32 QRPLTLVITLEDFLVHSEWSQ-KHGWRTAKRPGADYFLGYLS-QYYEIVLFSSNYMMY-SDKIAEKLDPIHAFVSYNLFK  108 (204)
T ss_dssp             CCSEEEEEECBTTTEEEEEET-TTEEEEEECTTHHHHHHHHT-TTEEEEEECSSCHHH-HHHHHHHTSTTCSSEEEEECG
T ss_pred             CCCeEEEEeccccEEeeeccc-cCceeEEeCCCHHHHHHHHH-hCCEEEEEcCCcHHH-HHHHHHHhCCCCCeEEEEEEe
Confidence            346789999999999742210 11113468999999999997 679999999999888 899999999874 77766654


Q ss_pred             cccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           99 YMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        99 ~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      +.+....   ..+...++.+|.+++++
T Consensus       109 ~~c~~~~---g~y~KdL~~Lgrdl~~v  132 (204)
T 3qle_A          109 EHCVYKD---GVHIKDLSKLNRDLSKV  132 (204)
T ss_dssp             GGSEEET---TEEECCGGGSCSCGGGE
T ss_pred             cceeEEC---CeeeecHHHhCCChHHE
Confidence            4332211   11333445556555554

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=98.36  E-value=3.6e-07  Score=71.71  Aligned_cols=121  Identities=8%  Similarity=-0.014  Sum_probs=77.6

Q ss_pred             CCceEEEecCCccccccccc----------c---------------------ccCCCcccCCcHHHHHHHHHHCCCeEEE
Q 031610           21 LPRLVVFDLDYTLWPFYCEC----------C---------------------YEDEIPYLYPHAKGILEALKEKGIHVAV   69 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~----------~---------------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i   69 (156)
                      ..+.++|||||||+++....          .                     ...-...+.||+.++|+.+. +++.++|
T Consensus        17 ~k~~LVlDLD~TLvhS~~~~~~~~w~~~~~~~~~~~~~dv~~f~~~~~~~~~~~~~~v~~RPg~~eFL~~l~-~~yeivI   95 (372)
T 3ef0_A           17 KRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKIS-ELYELHI   95 (372)
T ss_dssp             TCEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHH-TTEEEEE
T ss_pred             CCCEEEEcCCCCcccccCcCccchhhccCCCCchhhhhhhhceeeeeccCCceEEEEEEECcCHHHHHHHHh-cCcEEEE
Confidence            45789999999999862210          0                     01112346899999999998 7899999


Q ss_pred             EcCCCChhHHHHHHHHcCCCC-CCce-EEEecccCCCCCCHHHHHHHHHHh-CCCCcCceeEeeehhh--hHHHhhcccc
Q 031610           70 ASRSPAPDIAKTFLHKLGIHS-MFVP-MVVIYMYTKDSSNASSSESTCAIF-HFHPKRSCSIFMFQQV--MIEMFQNRHS  144 (156)
Q Consensus        70 ~T~~~~~~~~~~~l~~l~l~~-~f~~-~~~~~~~~~~kp~p~~~~~~~~~~-~~~~~~~~~v~~~~~~--~~~~~~~~~~  144 (156)
                      +|++.... +..+++.++... +|.. +++.++.+..      +..-++.+ +.+++.+   +++++.  ...+..|.-.
T Consensus        96 ~Tas~~~y-A~~vl~~LDp~~~~f~~ri~sr~~~g~~------~~KdL~~L~~~dl~~v---iiiDd~~~~~~~~pN~I~  165 (372)
T 3ef0_A           96 YTMGTKAY-AKEVAKIIDPTGKLFQDRVLSRDDSGSL------AQKSLRRLFPCDTSMV---VVIDDRGDVWDWNPNLIK  165 (372)
T ss_dssp             ECSSCHHH-HHHHHHHHCTTSCSSSSCEECTTTSSCS------SCCCGGGTCSSCCTTE---EEEESCSGGGTTCTTEEE
T ss_pred             EeCCcHHH-HHHHHHHhccCCceeeeEEEEecCCCCc------ceecHHHhcCCCCceE---EEEeCCHHHcCCCCcEee
Confidence            99999998 899999999988 6774 4444443321      11112322 5555543   334333  2323335666


Q ss_pred             cccccccc
Q 031610          145 MLDLNSSK  152 (156)
Q Consensus       145 ~~~~~~~~  152 (156)
                      ...++||+
T Consensus       166 i~~~~~f~  173 (372)
T 3ef0_A          166 VVPYEFFV  173 (372)
T ss_dssp             CCCCCCST
T ss_pred             eCCccccC
Confidence            66676665

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=97.54  E-value=1.5e-07  Score=70.23  Aligned_cols=70  Identities=17%  Similarity=0.236  Sum_probs=59.3

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      +++|++.++|+.|+++|++++++||.+... +..+++.+|+..+|..+.           |..+..+++.++..++++.+
T Consensus       136 ~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~~gl~~~f~~~~-----------p~~k~~~~~~l~~~~~~~~~  203 (263)
T 2yj3_A          136 VPRPNLKDYLEKLKNEGLKIIILSGDKEDK-VKELSKELNIQEYYSNLS-----------PEDKVRIIEKLKQNGNKVLM  203 (263)
Confidence            689999999999999999999999999888 799999999998887654           44567788888888877654


Q ss_pred             Ee
Q 031610          128 IF  129 (156)
Q Consensus       128 v~  129 (156)
                      |+
T Consensus       204 VG  205 (263)
T 2yj3_A          204 IG  205 (263)
Confidence            43

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=98.06  E-value=2e-06  Score=66.15  Aligned_cols=71  Identities=21%  Similarity=0.237  Sum_probs=55.9

Q ss_pred             CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      ..+..+++++||||||+.....  ..+......|++.++|+.|.+ .+.++|.|+..... +..+++.++....+
T Consensus       136 ~~~~k~tLVLDLDeTLvh~~~~--~~~~~~~~RP~l~eFL~~l~~-~yeivIfTas~~~y-a~~vld~Ld~~~~~  206 (320)
T 3shq_A          136 PREGKKLLVLDIDYTLFDHRSP--AETGTELMRPYLHEFLTSAYE-DYDIVIWSATSMRW-IEEKMRLLGVASND  206 (320)
T ss_dssp             CCTTCEEEEECCBTTTBCSSSC--CSSHHHHBCTTHHHHHHHHHH-HEEEEEECSSCHHH-HHHHHHHTTCTTCS
T ss_pred             CcCCCcEEEEeccccEEccccc--CCCcceEeCCCHHHHHHHHHh-CCEEEEEcCCcHHH-HHHHHHHhCCCCCc
Confidence            4445789999999999974221  112234588999999999984 69999999999998 89999999877653

>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*

Probab=98.03  E-value=3.9e-06  Score=64.76  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=33.8

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l   86 (156)
                      .++|++.++++.|+++|+.+.|||+.+... ++.+...+
T Consensus       143 ~~~~~~~~l~~~l~~~G~~v~ivSas~~~~-v~~~a~~~  180 (327)
T 4as2_A          143 RVFSGQRELYNKLMENGIEVYVISAAHEEL-VRMVAADP  180 (327)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHTCG
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHhhc
Confidence            589999999999999999999999999776 68887764

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=97.99  E-value=1.8e-07  Score=69.99  Aligned_cols=76  Identities=8%  Similarity=0.083  Sum_probs=58.4

Q ss_pred             cHHHHHHHHHHCCCeEEEEcCCCChhHH--H--HHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHh----CCCCc
Q 031610           52 HAKGILEALKEKGIHVAVASRSPAPDIA--K--TFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIF----HFHPK  123 (156)
Q Consensus        52 ~~~~~L~~L~~~G~~v~i~T~~~~~~~~--~--~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~----~~~~~  123 (156)
                      ...++++.|+++|++ +++||..... .  .  ..++..++..+|+.++++++....||+|.++..+++++    ++.|+
T Consensus       149 ~~~~l~~~L~~~g~~-~i~tn~~~~~-~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~~  226 (284)
T 2hx1_A          149 DLNKTVNLLRKRTIP-AIVANTDNTY-PLTKTDVAIAIGGVATMIESILGRRFIRFGKPDSQMFMFAYDMLRQKMEISKR  226 (284)
T ss_dssp             HHHHHHHHHHHCCCC-EEEECCCSEE-ECSSSCEEECHHHHHHHHHHHHCSCEEEESTTSSHHHHHHHHHHHTTSCCCGG
T ss_pred             cHHHHHHHHhcCCCe-EEEECCCccc-cCcCCCccccCChHHHHHHHHhCCceeEecCCCHHHHHHHHHHHhhccCCCcc
Confidence            445566688999999 9999998654 2  2  11244566677877777777778899999999999999    99999


Q ss_pred             CceeEe
Q 031610          124 RSCSIF  129 (156)
Q Consensus       124 ~~~~v~  129 (156)
                      ++++|+
T Consensus       227 ~~~~VG  232 (284)
T 2hx1_A          227 EILMVG  232 (284)
T ss_dssp             GEEEEE
T ss_pred             eEEEEC
Confidence            877655

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=97.80  E-value=6.5e-07  Score=66.36  Aligned_cols=77  Identities=12%  Similarity=0.041  Sum_probs=56.2

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHH--HHHHHH-cCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIA--KTFLHK-LGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKR  124 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~--~~~l~~-l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~  124 (156)
                      .++|++.++++.|+ +|+++ ++||..... .  ...+.. .++..+|+.+++.+.....||+|.++..++++  +.|++
T Consensus       130 ~~~~~~~~~l~~L~-~g~~~-i~tn~~~~~-~~~~~~l~~~~~l~~~~~~~~~~~~~~~~KP~~~~~~~~~~~--~~~~~  204 (263)
T 1zjj_A          130 LTYEKLKYATLAIR-NGATF-IGTNPDATL-PGEEGIYPGAGSIIAALKVATNVEPIIIGKPNEPMYEVVREM--FPGEE  204 (263)
T ss_dssp             CBHHHHHHHHHHHH-TTCEE-EESCCCSEE-EETTEEEECHHHHHHHHHHHHCCCCEECSTTSHHHHHHHHHH--STTCE
T ss_pred             CCHHHHHHHHHHHH-CCCEE-EEECCCccc-cCCCCCcCCcHHHHHHHHHHhCCCccEecCCCHHHHHHHHHh--CCccc
Confidence            57899999999999 89998 999988643 2  111222 33444566666666666789999999999999  78887


Q ss_pred             ceeEe
Q 031610          125 SCSIF  129 (156)
Q Consensus       125 ~~~v~  129 (156)
                      +++|+
T Consensus       205 ~~~VG  209 (263)
T 1zjj_A          205 LWMVG  209 (263)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            76554

>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A

Probab=97.77  E-value=5.5e-05  Score=57.01  Aligned_cols=47  Identities=17%  Similarity=0.172  Sum_probs=41.1

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~   94 (156)
                      .++.||+.++++.|+++|+++.++|+..... ++.+++.+|+......
T Consensus       140 i~l~~g~~e~i~~l~~~gi~v~ivSgg~~~~-i~~i~~~~g~~~~~~~  186 (297)
T 4fe3_A          140 VMLKEGYENFFGKLQQHGIPVFIFSAGIGDV-LEEVIRQAGVYHSNVK  186 (297)
T ss_dssp             CCBCBTHHHHHHHHHHTTCCEEEEEEEEHHH-HHHHHHHTTCCCTTEE
T ss_pred             CCCCCcHHHHHHHHHHcCCeEEEEeCCcHHH-HHHHHHHcCCCcccce
Confidence            4789999999999999999999999998777 7999999998765433

>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24

Probab=97.75  E-value=1.3e-06  Score=67.07  Aligned_cols=41  Identities=5%  Similarity=-0.262  Sum_probs=33.6

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~   75 (156)
                      .++|+|+|||||||++      ++.         .++|.++.+.|+.++++|||+.
T Consensus        19 ~~~kli~fDlDGTLld------~~~---------~~~l~~~~~~g~~~~~~tGR~~   59 (332)
T 1y8a_A           19 FQGHMFFTDWEGPWIL------TDF---------ALELCMAVFNNARFFSNLSEYD   59 (332)
T ss_dssp             -CCCEEEECSBTTTBC------CCH---------HHHHHHHHHCCHHHHHHHHHHH
T ss_pred             CCceEEEEECcCCCcC------ccH---------HHHHHHHHHCCCEEEEEcCCCc
Confidence            3579999999999998      222         1788888899999999999986

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}

Probab=97.62  E-value=0.00012  Score=58.54  Aligned_cols=94  Identities=11%  Similarity=0.063  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhccCCCCCceEEEecCCcccccccccc----------c---------------------cCCCcccCCc
Q 031610            4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECC----------Y---------------------EDEIPYLYPH   52 (156)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~----------~---------------------~~~~~~l~~~   52 (156)
                      +.|+..+...-+..  .....+++|||.||+.......          +                     ..-.....||
T Consensus        10 a~~~~~~~~~rll~--~~Kl~LVLDLDeTLiHs~~~~~~~~~~~~~~~~~~~~~~dv~~F~l~~~~~~~~~~~~V~~RPg   87 (442)
T 3ef1_A           10 ASRLESENVKRLRQ--EKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPG   87 (442)
T ss_dssp             HHHHHHHHHHHHHH--TTCEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTT
T ss_pred             HHHHHHHHHHHHHh--cCCeEEEEeeccceeccccccccchhccCCCCcchhhhccccceeeeeccCCceeEEEEEeCCC
Confidence            34444444443333  3447799999999997533210          0                     0112347899


Q ss_pred             HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC-CCce-EEEeccc
Q 031610           53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVP-MVVIYMY  101 (156)
Q Consensus        53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~-~f~~-~~~~~~~  101 (156)
                      +.++|+.|. +.+.++|+|++.... +..+++.++... +|.. +++.++.
T Consensus        88 l~eFL~~ls-~~yEivIfTas~~~Y-A~~Vl~~LDp~~~~f~~Rl~sRd~c  136 (442)
T 3ef1_A           88 LAQFLQKIS-ELYELHIYTMGTKAY-AKEVAKIIDPTGKLFQDRVLSRDDS  136 (442)
T ss_dssp             HHHHHHHHT-TTEEEEEECSSCHHH-HHHHHHHHCTTSTTTTTCEECTTTS
T ss_pred             HHHHHHHHh-CCcEEEEEcCCCHHH-HHHHHHHhccCCccccceEEEecCC
Confidence            999999997 679999999999898 899999999887 6766 4434443

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=97.31  E-value=0.0005  Score=57.51  Aligned_cols=103  Identities=11%  Similarity=0.028  Sum_probs=68.7

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM  100 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~  100 (156)
                      ..+.+++..|+++...-.      -..++.|++.++|+.|+++|+++.++||++... +..+.+.+|++.++..+     
T Consensus       436 g~~~l~va~~~~~~G~i~------~~D~l~~~~~~~i~~L~~~Gi~v~~~TGd~~~~-a~~ia~~lgi~~~~~~~-----  503 (645)
T 3j08_A          436 AKTAVIVARNGRVEGIIA------VSDTLKESAKPAVQELKRMGIKVGMITGDNWRS-AEAISRELNLDLVIAEV-----  503 (645)
T ss_dssp             TCCCEEEEETTEEEEEEE------EECCCTTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEECSC-----
T ss_pred             CCeEEEEEECCEEEEEEE------ecCCchhHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCEEEEeC-----
Confidence            446788888999875211      112688999999999999999999999999888 79999999987544222     


Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhccc
Q 031610          101 YTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRH  143 (156)
Q Consensus       101 ~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  143 (156)
                            .|+.-..+++.+.-. +...+++ -+.|+..|...-+
T Consensus       504 ------~P~~K~~~v~~l~~~-~~v~~vG-Dg~ND~~al~~A~  538 (645)
T 3j08_A          504 ------LPHQKSEEVKKLQAK-EVVAFVG-DGINDAPALAQAD  538 (645)
T ss_dssp             ------CTTCHHHHHHHHTTT-CCEEEEE-CSSSCHHHHHHSS
T ss_pred             ------CHHhHHHHHHHHhhC-CeEEEEe-CCHhHHHHHHhCC
Confidence                  223344455555444 3333222 3444555554433

>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2xje_A* 2xjf_A* 2jcm_A* 2xcw_A* 2xcv_A* 2xcx_A 2xjb_A* 2xjc_A* 2xjd_A*

Probab=97.28  E-value=0.00058  Score=55.82  Aligned_cols=74  Identities=20%  Similarity=0.161  Sum_probs=55.8

Q ss_pred             cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc-C-------------CCCCCceEEEecccCCCCCCHHH----
Q 031610           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-G-------------IHSMFVPMVVIYMYTKDSSNASS----  110 (156)
Q Consensus        49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l-~-------------l~~~f~~~~~~~~~~~~kp~p~~----  110 (156)
                      ..|++.+.|++|+++| +++++||+.... +...+..+ |             +..+|+.+++..    .||....    
T Consensus       247 kdp~l~~~L~~Lr~~G-KlfLiTNS~~~y-v~~~m~yllg~~~~~~~~~~~~dWrdlFD~vI~~A----~KP~FF~~~~p  320 (555)
T 2jc9_A          247 KDGKLPLLLSRMKEVG-KVFLATNSDYKY-TDKIMTYLFDFPHGPKPGSSHRPWQSYFDLILVDA----RKPLFFGEGTV  320 (555)
T ss_dssp             CCTHHHHHHHHHHHHS-EEEEECSSCHHH-HHHHHHHHTCSSSSSSTTSCCCCGGGGCSEEEESC----CTTGGGTTCCC
T ss_pred             CChHHHHHHHHHHHcC-CEEEEeCCChHH-HHHHHHHhcCCCccccccccccchhhhCCEEEEeC----CCCCcccCCCc
Confidence            5578899999999999 999999999888 78888877 6             345788866532    2333222    


Q ss_pred             ------------------------------HHHHHHHhCCCCcCceeE
Q 031610          111 ------------------------------SESTCAIFHFHPKRSCSI  128 (156)
Q Consensus       111 ------------------------------~~~~~~~~~~~~~~~~~v  128 (156)
                                                    +..+++.+|+.+.+.++|
T Consensus       321 fr~Vd~~tg~l~~~~~~~~l~~g~vY~gGn~~~~~~llg~~g~eVLYV  368 (555)
T 2jc9_A          321 LRQVDTKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYI  368 (555)
T ss_dssp             EEEEETTTTEECSSCCCSCCCTTCCEEECCHHHHHHHHTCCGGGEEEE
T ss_pred             ceEeecCCCccccccccccccCCceeccCCHHHHHHHhCCCCCeEEEE
Confidence                                          588899999887765444

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=97.25  E-value=0.00053  Score=58.20  Aligned_cols=101  Identities=8%  Similarity=0.005  Sum_probs=68.9

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM  100 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~  100 (156)
                      ..+.+++..||+++..-.      -..++.|++.++|+.|+++|++++++||++... +..+.+.+|++.++.       
T Consensus       533 G~~vl~va~d~~~~G~i~------i~D~i~~~~~~aI~~L~~~Gi~v~mlTGd~~~~-a~~ia~~lgi~~v~a-------  598 (736)
T 3rfu_A          533 GASVMFMAVDGKTVALLV------VEDPIKSSTPETILELQQSGIEIVMLTGDSKRT-AEAVAGTLGIKKVVA-------  598 (736)
T ss_dssp             TCEEEEEEETTEEEEEEE------EECCBCSSHHHHHHHHHHHTCEEEEECSSCHHH-HHHHHHHHTCCCEEC-------
T ss_pred             CCeEEEEEECCEEEEEEE------eeccchhhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCEEEE-------
Confidence            457889999999875211      112588999999999999999999999999888 799999999876442       


Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhh
Q 031610          101 YTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       101 ~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  140 (156)
                          ...|+.-..+++.++-......+++ -+.|+..|+.
T Consensus       599 ----~~~P~~K~~~v~~l~~~g~~V~~vG-DG~ND~paL~  633 (736)
T 3rfu_A          599 ----EIMPEDKSRIVSELKDKGLIVAMAG-DGVNDAPALA  633 (736)
T ss_dssp             ----SCCHHHHHHHHHHHHHHSCCEEEEE-CSSTTHHHHH
T ss_pred             ----ecCHHHHHHHHHHHHhcCCEEEEEE-CChHhHHHHH
Confidence                2245555556565543333333322 2334444443

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=96.96  E-value=0.0022  Score=54.26  Aligned_cols=66  Identities=17%  Similarity=0.150  Sum_probs=53.3

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      +..+.+++..|++++..-.      -..++.|++.++++.|+++|+++.++||+.... +..+.+.+|++..+
T Consensus       513 ~g~~~~~va~~~~~~G~i~------i~D~~~~~~~~~i~~l~~~Gi~v~~~TGd~~~~-a~~ia~~lgi~~~~  578 (723)
T 3j09_A          513 EAKTAVIVARNGRVEGIIA------VSDTLKESAKPAVQELKRMGIKVGMITGDNWRS-AEAISRELNLDLVI  578 (723)
T ss_dssp             TTCEEEEEEETTEEEEEEE------EECCSCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEE
T ss_pred             cCCeEEEEEECCEEEEEEe------ecCCcchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCcEEE
Confidence            3456788899999875211      112688999999999999999999999999888 79999999987443

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=95.80  E-value=0.083  Score=38.60  Aligned_cols=40  Identities=10%  Similarity=-0.099  Sum_probs=31.2

Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhc
Q 031610          101 YTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQN  141 (156)
Q Consensus       101 ~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  141 (156)
                      .....+++..+..+++.+|++++++.+++ -+.+++.|+++
T Consensus       192 ~~~~~~K~~~l~~l~~~lgi~~~~~i~~G-D~~NDi~m~~~  231 (279)
T 4dw8_A          192 VPQGIDKALSLSVLLENIGMTREEVIAIG-DGYNDLSMIKF  231 (279)
T ss_dssp             ECTTCCHHHHHHHHHHHHTCCGGGEEEEE-CSGGGHHHHHH
T ss_pred             ecCCCChHHHHHHHHHHcCCCHHHEEEEC-CChhhHHHHHH
Confidence            34456779999999999999999887655 56677777754

>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}

Probab=95.77  E-value=0.0051  Score=48.33  Aligned_cols=42  Identities=17%  Similarity=0.160  Sum_probs=37.8

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      +++|+++++++.|+++|++++|||++.... ++.+.+.+|+..
T Consensus       221 r~~p~~~eLi~~L~~~G~~v~IVSgg~~~~-v~~ia~~lg~~y  262 (385)
T 4gxt_A          221 RTLDEMVDLYRSLEENGIDCYIVSASFIDI-VRAFATDTNNNY  262 (385)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHCTTSSC
T ss_pred             eeCHHHHHHHHHHHHCCCeEEEEcCCcHHH-HHHHHHHhCccc
Confidence            479999999999999999999999999887 799999888643

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=95.57  E-value=0.02  Score=50.11  Aligned_cols=43  Identities=16%  Similarity=0.242  Sum_probs=39.6

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      ++.|++.++++.|+++|+++.++||..... +..+.+.+|+...
T Consensus       603 ~lr~~~~~~I~~l~~~Gi~v~miTGD~~~t-a~~ia~~lgi~~~  645 (995)
T 3ar4_A          603 PPRKEVMGSIQLCRDAGIRVIMITGDNKGT-AIAICRRIGIFGE  645 (995)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHHTSSCT
T ss_pred             CCchhHHHHHHHHHHcCCEEEEECCCCHHH-HHHHHHHcCcCCC
Confidence            588999999999999999999999999888 7999999999654

>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A

Probab=94.86  E-value=0.032  Score=44.92  Aligned_cols=49  Identities=14%  Similarity=0.129  Sum_probs=40.2

Q ss_pred             cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH-c--------CCCCCCceEEEe
Q 031610           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-L--------GIHSMFVPMVVI   98 (156)
Q Consensus        49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~-l--------~l~~~f~~~~~~   98 (156)
                      ..|.+...|++|+++|.+++++||++... +...+.. +        ++..+|+.+++.
T Consensus       187 k~~~l~~~L~~lr~~GKklFLiTNS~~~y-~~~~M~y~~~~~~~~g~dWrdlFDvVIv~  244 (470)
T 4g63_A          187 REKEVVEGLKHFIRYGKKIFILTNSEYSY-SKLLLDYALSPFLDKGEHWQGLFEFVITL  244 (470)
T ss_dssp             CCHHHHHHHHHHHTTTCEEEEECSSCHHH-HHHHHHHHTGGGSCTTCCGGGGCSEEEES
T ss_pred             CCHhHHHHHHHHHHcCCeEEEeeCCCchH-HHHHHHhhcccCCCCCCChhhhcCEEEEC
Confidence            35778889999999999999999999888 6777765 3        466789988764

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=94.85  E-value=0.098  Score=37.40  Aligned_cols=85  Identities=8%  Similarity=0.085  Sum_probs=58.1

Q ss_pred             CcHHHHHHHHH-HC-CCeE-----------EEEc-CCCChhHHHHHHHHcCCCCCCceEEEe----cccCCCCCCHHHHH
Q 031610           51 PHAKGILEALK-EK-GIHV-----------AVAS-RSPAPDIAKTFLHKLGIHSMFVPMVVI----YMYTKDSSNASSSE  112 (156)
Q Consensus        51 ~~~~~~L~~L~-~~-G~~v-----------~i~T-~~~~~~~~~~~l~~l~l~~~f~~~~~~----~~~~~~kp~p~~~~  112 (156)
                      +.+.++++.++ +. |+.+           ++++ +..... +...++.++  ..|..+ .+    +.....+|++..+.
T Consensus        84 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~-~~~~~~ei~~~~~~K~~~~~  159 (231)
T 1wr8_A           84 DEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVET-VREIINELN--LNLVAV-DSGFAIHVKKPWINKGSGIE  159 (231)
T ss_dssp             SHHHHHHHHHHHHCTTCCBCTTGGGCSSCEEECTTTSCHHH-HHHHHHHTT--CSCEEE-ECSSCEEEECTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCceEEecCCCceeeEEEECCCCCHHH-HHHHHHhcC--CcEEEE-ecCcEEEEecCCCChHHHHH
Confidence            77888888887 55 6654           6666 445455 577777764  345444 22    22345789999999


Q ss_pred             HHHHHhCCCCcCceeEeeehhhhHHHhh
Q 031610          113 STCAIFHFHPKRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~  140 (156)
                      .+++.+++.++++.+++ -+.+++.|+.
T Consensus       160 ~~~~~~~~~~~~~~~iG-D~~nD~~~~~  186 (231)
T 1wr8_A          160 KASEFLGIKPKEVAHVG-DGENDLDAFK  186 (231)
T ss_dssp             HHHHHHTSCGGGEEEEE-CSGGGHHHHH
T ss_pred             HHHHHcCCCHHHEEEEC-CCHHHHHHHH
Confidence            99999999998876554 3455666664

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=94.80  E-value=0.012  Score=43.85  Aligned_cols=16  Identities=31%  Similarity=0.086  Sum_probs=14.1

Q ss_pred             CceEEEecCCcccccc
Q 031610           22 PRLVVFDLDYTLWPFY   37 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~   37 (156)
                      +++|+||+||||+++.
T Consensus        32 i~~viFD~dGTL~ds~   47 (287)
T 3a1c_A           32 VTAVIFDKTGTLTKGK   47 (287)
T ss_dssp             CCEEEEECCCCCBCSC
T ss_pred             CCEEEEeCCCCCcCCC
Confidence            6899999999999953

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=94.79  E-value=0.071  Score=38.74  Aligned_cols=90  Identities=13%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             CCcHHHHHHHHHHCCCeEEEEcCCCC------hhHHH-HHHHHcCC-------------CCCCceEEEecc---------
Q 031610           50 YPHAKGILEALKEKGIHVAVASRSPA------PDIAK-TFLHKLGI-------------HSMFVPMVVIYM---------  100 (156)
Q Consensus        50 ~~~~~~~L~~L~~~G~~v~i~T~~~~------~~~~~-~~l~~l~l-------------~~~f~~~~~~~~---------  100 (156)
                      .+.+.++++.+++.|+.+.++|+...      .. .. ..+..+++             ..++...+..++         
T Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~  165 (261)
T 2rbk_A           87 QEEVKAMAAFCEKKGVPCIFVEEHNISVCQPNEM-VKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVLPS  165 (261)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECSSCEEEESCCHH-HHHHTTTTTCCCCCCBCCHHHHHTSCCSEEEECCCHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHcCCeEEEEeCCcEEEeCccHH-HHHHHHHhhcccCCCccccchhccCceeEEEEEeCHHHHHHHHHh
Confidence            36778889999888999888876543      11 12 22222332             222322222111         


Q ss_pred             ----------------cCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhc
Q 031610          101 ----------------YTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQN  141 (156)
Q Consensus       101 ----------------~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  141 (156)
                                      ....+|++..+..+++.+++.++++.+++ -+.+++.|+.+
T Consensus       166 ~~~~~~~~s~~~~~ei~~~~~~K~~~~~~~~~~~~~~~~~~~~iG-D~~nD~~~~~~  221 (261)
T 2rbk_A          166 IPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFG-DGGNDISMLRH  221 (261)
T ss_dssp             STTCEEECSSTTCCEEESTTCSHHHHHHHHHHHHTCCGGGEEEEE-CSGGGHHHHHH
T ss_pred             cCCeEEEEecCCeEEecCCCCChHHHHHHHHHHcCCCHHHEEEEC-CCHHHHHHHHH
Confidence                            34568999999999999999999876655 45567777653

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=94.75  E-value=0.033  Score=48.98  Aligned_cols=42  Identities=19%  Similarity=0.174  Sum_probs=38.8

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      ++.|++.++|+.|+++|+++.++||+.... +..+.+.+|+..
T Consensus       604 p~r~~~~~aI~~l~~aGI~vvmiTGd~~~t-A~~ia~~lgi~~  645 (1034)
T 3ixz_A          604 PPRATVPDAVLKCRTAGIRVIMVTGDHPIT-AKAIAASVGIIS  645 (1034)
T ss_pred             CCchhHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCCCC
Confidence            688999999999999999999999999998 799999999853

>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}

Probab=94.52  E-value=0.54  Score=30.49  Aligned_cols=77  Identities=16%  Similarity=0.196  Sum_probs=52.7

Q ss_pred             CcHHHHHHHHHHHhccCCCCCceEEEecCCcc-ccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHH
Q 031610            2 GDLEKVKNEALEIIGQFENLPRLVVFDLDYTL-WPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAK   80 (156)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL-~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~   80 (156)
                      +.+++++....+.+...+...+.|++|+-++= +|      +.+     .....++.+.++++|.++.++.-++  . +.
T Consensus        28 ~~a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iD------ssg-----l~~L~~~~~~~~~~g~~l~l~~~~~--~-v~   93 (130)
T 2kln_A           28 ANAEDFRRRALTVVDQDPGQVEWFVLNAESNVEVD------LTA-----LDALDQLRTELLRRGIVFAMARVKQ--D-LR   93 (130)
T ss_dssp             TTHHHHHHHHHHHTTSSSSCCEEEEEECSCCSSSB------CST-----TTHHHHHHHHHHTTTEEEEEECCSS--H-HH
T ss_pred             chHHHHHHHHHHHHhcCCCCceEEEEECCCCChhh------HHH-----HHHHHHHHHHHHHCCCEEEEEcCCH--H-HH
Confidence            45677776655555443335688999998773 33      222     2446678889999999998875443  4 68


Q ss_pred             HHHHHcCCCCCC
Q 031610           81 TFLHKLGIHSMF   92 (156)
Q Consensus        81 ~~l~~l~l~~~f   92 (156)
                      ..++..|+...|
T Consensus        94 ~~l~~~gl~~~~  105 (130)
T 2kln_A           94 ESLRAASLLDKI  105 (130)
T ss_dssp             HHHHHCTTHHHH
T ss_pred             HHHHHcCChhhc
Confidence            899998887655

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=94.36  E-value=0.048  Score=47.96  Aligned_cols=42  Identities=19%  Similarity=0.190  Sum_probs=38.9

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      ++.|++.++|+.|+++|+++.++||+.... +..+.+.+|+..
T Consensus       599 plr~~~~~aI~~l~~aGI~v~miTGD~~~t-A~~ia~~lgi~~  640 (1028)
T 2zxe_A          599 PPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAIAKGVGIIS  640 (1028)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTSSC
T ss_pred             CCChhHHHHHHHHHHcCCEEEEECCCCHHH-HHHHHHHcCCCC
Confidence            588999999999999999999999999888 799999999863

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=94.25  E-value=0.045  Score=40.18  Aligned_cols=78  Identities=10%  Similarity=0.097  Sum_probs=51.5

Q ss_pred             HHHCCCeEEEEcCCCChhHHHHHHHHcC--CCCCCceEEEe----cccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehh
Q 031610           60 LKEKGIHVAVASRSPAPDIAKTFLHKLG--IHSMFVPMVVI----YMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQ  133 (156)
Q Consensus        60 L~~~G~~v~i~T~~~~~~~~~~~l~~l~--l~~~f~~~~~~----~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~  133 (156)
                      +.+.+++++++|+...   ....++.++  +...|..+.+.    +-....++++..+..+++.+++.++++..++ -+.
T Consensus       142 ~~~~~~ki~i~~~~~~---~~~~~~~l~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~~~~l~~~l~i~~~~~~~~G-D~~  217 (271)
T 1rlm_A          142 IDDVLFKFSLNLPDEQ---IPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIG-DSG  217 (271)
T ss_dssp             CCSCEEEEEEECCGGG---HHHHHHHHHHHTTTSSEEEECSTTEEEEECTTCSHHHHHHHHHHHHTCCGGGEEEEE-CSG
T ss_pred             CCCceEEEEEEcCHHH---HHHHHHHHHHHcCCcEEEEeccCCeEEEEcCCCChHHHHHHHHHHhCCCHHHEEEEC-CcH
Confidence            3456788998886642   344444443  44455544433    2234578899999999999999998876555 456


Q ss_pred             hhHHHhhc
Q 031610          134 VMIEMFQN  141 (156)
Q Consensus       134 ~~~~~~~~  141 (156)
                      +++.|++.
T Consensus       218 nD~~m~~~  225 (271)
T 1rlm_A          218 NDAEMLKM  225 (271)
T ss_dssp             GGHHHHHH
T ss_pred             HHHHHHHH
Confidence            67777753

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=93.37  E-value=0.18  Score=37.00  Aligned_cols=39  Identities=13%  Similarity=0.019  Sum_probs=30.7

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhc
Q 031610          102 TKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQN  141 (156)
Q Consensus       102 ~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  141 (156)
                      ....+++..+..+++.+|++++++.+++ -+.+++.|+++
T Consensus       198 ~~~~~K~~~l~~l~~~lgi~~~~~i~~G-D~~NDi~m~~~  236 (290)
T 3dnp_A          198 PKGVSKEAGLALVASELGLSMDDVVAIG-HQYDDLPMIEL  236 (290)
T ss_dssp             ETTCCHHHHHHHHHHHTTCCGGGEEEEE-CSGGGHHHHHH
T ss_pred             ECCCCHHHHHHHHHHHcCCCHHHEEEEC-CchhhHHHHHh
Confidence            4456788999999999999999986655 56677777754

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=92.46  E-value=0.12  Score=38.14  Aligned_cols=77  Identities=17%  Similarity=0.059  Sum_probs=45.4

Q ss_pred             HCCCeEEEEc-CCCChhHHHHHHHHcCCCCCCceEEEec----ccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhH
Q 031610           62 EKGIHVAVAS-RSPAPDIAKTFLHKLGIHSMFVPMVVIY----MYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMI  136 (156)
Q Consensus        62 ~~G~~v~i~T-~~~~~~~~~~~l~~l~l~~~f~~~~~~~----~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~  136 (156)
                      +..+++.++. ..........+.+.++  ..+..+....    -.....+++..+..+++.+|++++++.+++ -+.+++
T Consensus       164 ~~~~ki~i~~~~~~~~~~~~~l~~~~~--~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~e~ia~G-D~~NDi  240 (283)
T 3dao_A          164 NDIIKFTVFHPDKCEELCTPVFIPAWN--KKAHLAAAGKEWVDCNAKGVSKWTALSYLIDRFDLLPDEVCCFG-DNLNDI  240 (283)
T ss_dssp             SCCCEEEEECSSCHHHHHTTTHHHHHT--TTEEEEEETTTEEEEEETTCCHHHHHHHHHHHTTCCGGGEEEEE-CSGGGH
T ss_pred             cCceEEEEEcChHHHHHHHHHHHHHhc--CCEEEEEecCceEEEeeCCCcHHHHHHHHHHHhCCCHHHEEEEC-CCHHHH
Confidence            5678888883 2221111122233333  2233322221    223356688899999999999999976655 566788


Q ss_pred             HHhhc
Q 031610          137 EMFQN  141 (156)
Q Consensus       137 ~~~~~  141 (156)
                      .|+++
T Consensus       241 ~ml~~  245 (283)
T 3dao_A          241 EMLQN  245 (283)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88864

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=92.00  E-value=0.11  Score=45.22  Aligned_cols=42  Identities=12%  Similarity=0.098  Sum_probs=39.2

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      ++.|++.++++.|+++|+++.++||..... +..+.+++|+..
T Consensus       535 p~R~ea~~aI~~l~~aGI~v~MiTGD~~~T-A~aIA~~lGI~~  576 (920)
T 1mhs_A          535 PPRHDTYKTVCEAKTLGLSIKMLTGDAVGI-ARETSRQLGLGT  576 (920)
T ss_dssp             CCCHHHHHHHHHHHHHTCEEEEEESSCHHH-HHHHHHHHTSSC
T ss_pred             cccccHHHHHHHHhhcCceEEEEcCCCHHH-HHHHHHHcCCCc
Confidence            689999999999999999999999999888 899999999964

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=91.30  E-value=1  Score=32.34  Aligned_cols=41  Identities=20%  Similarity=0.063  Sum_probs=32.2

Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhcc
Q 031610          101 YTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNR  142 (156)
Q Consensus       101 ~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  142 (156)
                      .....+++..+..+++.+|++++++.+++ -+.+++.|+++-
T Consensus       195 ~~~~~~K~~~l~~l~~~lgi~~~~~i~~G-D~~NDi~m~~~a  235 (274)
T 3fzq_A          195 IQKDFHKGKAIKRLQERLGVTQKETICFG-DGQNDIVMFQAS  235 (274)
T ss_dssp             EETTCSHHHHHHHHHHHHTCCSTTEEEEC-CSGGGHHHHHTC
T ss_pred             eeCCCCHHHHHHHHHHHcCCCHHHEEEEC-CChhHHHHHHhc
Confidence            44567889999999999999999986655 566788887643

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=90.89  E-value=0.11  Score=40.78  Aligned_cols=15  Identities=20%  Similarity=0.337  Sum_probs=13.0

Q ss_pred             CceEEEecCCccccc
Q 031610           22 PRLVVFDLDYTLWPF   36 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~   36 (156)
                      .|.|+||+||+|++-
T Consensus         1 ~~~~~fdvdgv~~~~   15 (384)
T 1qyi_A            1 MKKILFDVDGVFLSE   15 (384)
T ss_dssp             CCEEEECSBTTTBCS
T ss_pred             CceEEEecCceeech
Confidence            378999999999974

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=90.83  E-value=0.12  Score=44.69  Aligned_cols=42  Identities=12%  Similarity=0.112  Sum_probs=38.6

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      ++.|++.++++.|+++|+++.++||..... +..+.+++|+..
T Consensus       488 p~R~~a~~aI~~l~~aGI~v~MiTGD~~~t-A~~iA~~lGi~~  529 (885)
T 3b8c_A          488 PPRHDSAETIRRALNLGVNVKMITGDQLAI-GKETGRRLGMGT  529 (885)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCEEEESSCHHH-HTHHHHTTTCTT
T ss_pred             ccchhHHHHHHHHHHcCCcEEEEcCCChHH-HHHHHHHhCCcc
Confidence            588999999999999999999999999888 799999999853

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=88.94  E-value=0.22  Score=36.25  Aligned_cols=36  Identities=8%  Similarity=0.015  Sum_probs=27.1

Q ss_pred             CCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhc
Q 031610          105 SSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQN  141 (156)
Q Consensus       105 kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  141 (156)
                      ..++..+..+++.+|++++++.+++ -+.+++.|+++
T Consensus       196 ~~K~~~l~~l~~~lgi~~~~~i~~G-D~~NDi~m~~~  231 (279)
T 3mpo_A          196 ASKGGTLSELVDQLGLTADDVMTLG-DQGNDLTMIKY  231 (279)
T ss_dssp             CCHHHHHHHHHHHTTCCGGGEEEC---CCTTHHHHHH
T ss_pred             CChHHHHHHHHHHcCCCHHHEEEEC-CchhhHHHHHh
Confidence            4478899999999999999876555 45667777753

>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*

Probab=87.20  E-value=2.4  Score=27.17  Aligned_cols=59  Identities=14%  Similarity=0.080  Sum_probs=41.3

Q ss_pred             CCceEEEecCCcc-ccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           21 LPRLVVFDLDYTL-WPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        21 ~~k~i~fDlDGTL-~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      ..+.+++|+.++= +|      +.+     ..-...+.+.++++|.++.++.  ..+. +...++..|+...|.
T Consensus        51 ~~~~vvlDls~V~~iD------SsG-----l~~L~~~~~~~~~~g~~l~l~~--~~~~-v~~~l~~~gl~~~~~  110 (125)
T 2ka5_A           51 GYNKIFLVLSDVESID------SFS-----LGVIVNILKSISSSGGFFALVS--PNEK-VERVLSLTNLDRIVK  110 (125)
T ss_dssp             TCCEEEEECTTCSCCC------HHH-----HHHHHHHHHHHHHHTCEEEEEC--CCHH-HHHHHHHTTSTTTSE
T ss_pred             CCCEEEEECCCCCEEc------HHH-----HHHHHHHHHHHHHcCCEEEEEe--CCHH-HHHHHHHcCCCceEE
Confidence            4577999998873 33      221     1224456677888999999884  3345 699999999988774

>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}

Probab=86.52  E-value=1.4  Score=28.84  Aligned_cols=59  Identities=15%  Similarity=0.072  Sum_probs=41.1

Q ss_pred             CCCceEEEecCCcc-ccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           20 NLPRLVVFDLDYTL-WPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        20 ~~~k~i~fDlDGTL-~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      ...+.|++|+-++= +|      +.+     .....++.+.++++|.++.++.  .... +...++..|+...+
T Consensus        62 ~~~~~vvlDls~v~~iD------ssg-----l~~L~~~~~~~~~~g~~l~l~~--~~~~-v~~~l~~~gl~~~~  121 (143)
T 3llo_A           62 ENIHTVILDFTQVNFMD------SVG-----VKTLAGIVKEYGDVGIYVYLAG--CSAQ-VVNDLTSNRFFENP  121 (143)
T ss_dssp             -CCSEEEEECTTCCCCC------HHH-----HHHHHHHHHHHHTTTCEEEEES--CCHH-HHHHHHHTTTTSSG
T ss_pred             CCceEEEEECCCCcccc------HHH-----HHHHHHHHHHHHHCCCEEEEEe--CCHH-HHHHHHhCCCeecc
Confidence            35678999998863 23      221     1234557788899999999884  3345 68999999988766

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=85.55  E-value=0.82  Score=32.90  Aligned_cols=39  Identities=10%  Similarity=-0.009  Sum_probs=30.2

Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcCceeEeeeh-hhhHHHhh
Q 031610          101 YTKDSSNASSSESTCAIFHFHPKRSCSIFMFQ-QVMIEMFQ  140 (156)
Q Consensus       101 ~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~  140 (156)
                      ....||+|..+..+++.++++++++.+|+ -+ .+++.|.+
T Consensus       183 ~~~~kp~~~~~~~~~~~~~~~~~~~~~vG-D~~~~Di~~~~  222 (268)
T 3qgm_A          183 VVVGKPSEVIMREALDILGLDAKDVAVVG-DQIDVDVAAGK  222 (268)
T ss_dssp             EECSTTSHHHHHHHHHHHTCCGGGEEEEE-SCTTTHHHHHH
T ss_pred             eecCCCCHHHHHHHHHHhCCCchhEEEEC-CCchHHHHHHH
Confidence            45689999999999999999999987655 23 35565554

>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A

Probab=85.45  E-value=3.7  Score=25.07  Aligned_cols=57  Identities=18%  Similarity=0.174  Sum_probs=38.9

Q ss_pred             ceEEEecCCcc-ccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           23 RLVVFDLDYTL-WPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        23 k~i~fDlDGTL-~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      +.+++|+-++= +|      +.+     ..-..++.++++++|.++.++.-  .+. +...++..|+...|.
T Consensus        45 ~~vvlDls~v~~iD------ssg-----l~~L~~~~~~~~~~g~~l~l~~~--~~~-v~~~l~~~gl~~~~~  102 (110)
T 1sbo_A           45 KKIVLDLSSVSYMD------SAG-----LGTLVVILKDAKINGKEFILSSL--KES-ISRILKLTHLDKIFK  102 (110)
T ss_dssp             SEEEEECTTCCCBC------HHH-----HHHHHHHHHHHHHTTCEEEEESC--CHH-HHHHHHHTTCGGGSC
T ss_pred             cEEEEECCCCcEEc------cHH-----HHHHHHHHHHHHHcCCEEEEEeC--CHH-HHHHHHHhCccceee
Confidence            56899998773 33      211     12244566778889999987643  345 699999999987764

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=85.10  E-value=5.8  Score=25.74  Aligned_cols=64  Identities=14%  Similarity=0.023  Sum_probs=36.3

Q ss_pred             HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHH--CCCeEEEEcCCCChhHHHHHHHHcC
Q 031610           10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE--KGIHVAVASRSPAPDIAKTFLHKLG   87 (156)
Q Consensus        10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~--~G~~v~i~T~~~~~~~~~~~l~~l~   87 (156)
                      +|++.+....+.+.+|++|++-.-                 ....++++.+++  ...+++++|+..... ........|
T Consensus        72 ~al~~l~~~~~~~dliilD~~l~~-----------------~~g~~~~~~lr~~~~~~~ii~ls~~~~~~-~~~~~~~~g  133 (157)
T 3hzh_A           72 EAVIKYKNHYPNIDIVTLXITMPK-----------------MDGITCLSNIMEFDKNARVIMISALGKEQ-LVKDCLIKG  133 (157)
T ss_dssp             HHHHHHHHHGGGCCEEEECSSCSS-----------------SCHHHHHHHHHHHCTTCCEEEEESCCCHH-HHHHHHHTT
T ss_pred             HHHHHHHhcCCCCCEEEEeccCCC-----------------ccHHHHHHHHHhhCCCCcEEEEeccCcHH-HHHHHHHcC
Confidence            344444433334677888875221                 123466777665  347899999887665 344444566


Q ss_pred             CCCC
Q 031610           88 IHSM   91 (156)
Q Consensus        88 l~~~   91 (156)
                      ..++
T Consensus       134 ~~~~  137 (157)
T 3hzh_A          134 AKTF  137 (157)
T ss_dssp             CSEE
T ss_pred             CCEE
Confidence            5443

>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0

Probab=83.83  E-value=6.5  Score=25.17  Aligned_cols=55  Identities=20%  Similarity=0.248  Sum_probs=34.3

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHH----CCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE----KGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~----~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      ...+.+|++|++-.  +               ....++++.+++    .+.+++++|+..... ........|...+
T Consensus        57 ~~~~dliilD~~l~--~---------------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~-~~~~~~~~g~~~~  115 (152)
T 3heb_A           57 AGRAQLVLLDLNLP--D---------------MTGIDILKLVKENPHTRRSPVVILTTTDDQR-EIQRCYDLGANVY  115 (152)
T ss_dssp             TTCBEEEEECSBCS--S---------------SBHHHHHHHHHHSTTTTTSCEEEEESCCCHH-HHHHHHHTTCSEE
T ss_pred             cCCCCEEEEeCCCC--C---------------CcHHHHHHHHHhcccccCCCEEEEecCCCHH-HHHHHHHCCCcEE
Confidence            34567788887421  1               224578888877    457899999888665 3444445565443

>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}

Probab=83.65  E-value=6.3  Score=24.85  Aligned_cols=64  Identities=20%  Similarity=0.219  Sum_probs=37.0

Q ss_pred             HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHH--CCCeEEEEcCCCChhHHHHHHHHcC
Q 031610           10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE--KGIHVAVASRSPAPDIAKTFLHKLG   87 (156)
Q Consensus        10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~--~G~~v~i~T~~~~~~~~~~~l~~l~   87 (156)
                      +|++.+......+.+|++|++-.  +               ....++++.+++  ...+++++|+..... .....-..|
T Consensus        38 ~a~~~~~~~~~~~dlvi~d~~l~--~---------------~~g~~~~~~l~~~~~~~~ii~ls~~~~~~-~~~~~~~~g   99 (143)
T 3jte_A           38 EGLRIFTENCNSIDVVITDMKMP--K---------------LSGMDILREIKKITPHMAVIILTGHGDLD-NAILAMKEG   99 (143)
T ss_dssp             HHHHHHHHTTTTCCEEEEESCCS--S---------------SCHHHHHHHHHHHCTTCEEEEEECTTCHH-HHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCC--C---------------CcHHHHHHHHHHhCCCCeEEEEECCCCHH-HHHHHHHhC
Confidence            34444443345667888887522  1               123466666665  357899999887655 344344556


Q ss_pred             CCCC
Q 031610           88 IHSM   91 (156)
Q Consensus        88 l~~~   91 (156)
                      ..++
T Consensus       100 ~~~~  103 (143)
T 3jte_A          100 AFEY  103 (143)
T ss_dssp             CSEE
T ss_pred             ccee
Confidence            5443

>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}

Probab=83.60  E-value=1.1  Score=28.56  Aligned_cols=59  Identities=15%  Similarity=0.165  Sum_probs=39.5

Q ss_pred             CCCceEEEecCCcc-ccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           20 NLPRLVVFDLDYTL-WPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        20 ~~~k~i~fDlDGTL-~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      +..+.+++|+-++= +|      +.+     ..-..++.+++++ |.++.++.  .... +.+.++..|+...+.
T Consensus        44 ~~~~~vilDl~~v~~iD------ssg-----l~~L~~~~~~~~~-g~~l~l~~--~~~~-v~~~l~~~gl~~~~~  103 (118)
T 3ny7_A           44 EGKRIVILKWDAVPVLD------AGG-----LDAFQRFVKRLPE-GCELRVCN--VEFQ-PLRTMARAGIQPIPG  103 (118)
T ss_dssp             TTCSEEEEEEEECCCBC------HHH-----HHHHHHHHHHCCT-TCEEEEEC--CCHH-HHHHHHHTTCCCBTT
T ss_pred             CCCcEEEEEcCCCCeec------HHH-----HHHHHHHHHHHHC-CCEEEEec--CCHH-HHHHHHHcCChhhcC
Confidence            45688999997763 23      221     1224456677788 99998884  3345 689999999887664

>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}

Probab=83.38  E-value=3.1  Score=31.01  Aligned_cols=60  Identities=5%  Similarity=0.059  Sum_probs=47.2

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      +.|.|.++.=+.|+.+.      .      +.+...+-|..|++.|++++++++.. +. +...++++++...|
T Consensus        33 ~~m~k~iVIKiGGs~l~------~------~~~~l~~dIa~L~~~G~~vVlVhgGg-~~-i~~~l~~lg~~~~~   92 (279)
T 3l86_A           33 GSMKDIIVIKIGGVASQ------Q------LSGDFLSQIKNWQDAGKQLVIVHGGG-FA-INKLMEENQVPVKK   92 (279)
T ss_dssp             --CCCEEEEEECTTGGG------S------CCHHHHHHHHHHHHTTCEEEEEECCH-HH-HHHHHHHTTCCCCE
T ss_pred             ccCCceEEEEEChHHHH------h------HHHHHHHHHHHHHhCCCcEEEEECCH-HH-HHHHHHHcCCCCcc
Confidence            34557899999999886      1      34667888999999999999999885 44 58889999987665

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=82.33  E-value=2.2  Score=31.05  Aligned_cols=62  Identities=11%  Similarity=0.083  Sum_probs=49.1

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCCcHHHHHH--------HHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILE--------ALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~--------~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      .++|+|+|||||||+++      .     +.+.+.+++.        .+++.|++++++||++... +...+..+++...
T Consensus        20 ~~~kliifDlDGTLlds------~-----i~~~~~~~l~~~~~~l~~~~~~~g~~~~~~tGr~~~~-~~~~~~~~g~~~~   87 (289)
T 3gyg_A           20 HPQYIVFCDFDETYFPH------T-----IDEQKQQDIYELEDYLEQKSKDGELIIGWVTGSSIES-ILDKMGRGKFRYF   87 (289)
T ss_dssp             SCSEEEEEETBTTTBCS------S-----CCHHHHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHH-HHHHHHHTTCCBC
T ss_pred             CCCeEEEEECCCCCcCC------C-----CCcchHHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHH-HHHHHHhhccCCC
Confidence            36899999999999983      2     4466666666        5578999999999999888 6888998887543


Q ss_pred             Cc
Q 031610           92 FV   93 (156)
Q Consensus        92 f~   93 (156)
                      -+
T Consensus        88 ~~   89 (289)
T 3gyg_A           88 PH   89 (289)
T ss_dssp             CS
T ss_pred             CC
Confidence            33

>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A

Probab=81.44  E-value=4.9  Score=24.83  Aligned_cols=57  Identities=18%  Similarity=0.282  Sum_probs=39.3

Q ss_pred             CceEEEecCCc-cccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           22 PRLVVFDLDYT-LWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        22 ~k~i~fDlDGT-L~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      .+.+++|+.++ .+|      +.+     ..-...+.+.++++|.++.++.-  .+. +...++..|+...|
T Consensus        43 ~~~vvlDls~v~~iD------ssg-----l~~L~~~~~~~~~~g~~l~l~~~--~~~-v~~~l~~~gl~~~~  100 (116)
T 1th8_B           43 IRHIVLNLGQLTFMD------SSG-----LGVILGRYKQIKNVGGQMVVCAV--SPA-VKRLFDMSGLFKII  100 (116)
T ss_dssp             CCEEEEEEEEEEEEC------HHH-----HHHHHHHHHHHHHTTCCEEEESC--CHH-HHHHHHHHTGGGTS
T ss_pred             CcEEEEECCCCcEEc------cHH-----HHHHHHHHHHHHHhCCeEEEEeC--CHH-HHHHHHHhCCceeE
Confidence            56799999887 334      211     12244566778889999987743  345 68999999988877

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=82.07  E-value=0.31  Score=35.69  Aligned_cols=16  Identities=19%  Similarity=-0.049  Sum_probs=14.2

Q ss_pred             CCceEEEecCCccccc
Q 031610           21 LPRLVVFDLDYTLWPF   36 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~   36 (156)
                      .++.|+||.||||+.+
T Consensus        27 ~i~~v~fDktGTLT~g   42 (263)
T 2yj3_A           27 EIDTIIFEKTGTLTYG   42 (263)
Confidence            5788999999999974

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=80.43  E-value=1.8  Score=32.54  Aligned_cols=42  Identities=19%  Similarity=0.242  Sum_probs=34.8

Q ss_pred             ccCCcHHHHHHHHH-HC----------CCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           48 YLYPHAKGILEALK-EK----------GIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        48 ~l~~~~~~~L~~L~-~~----------G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      .+.+...+++.++. +.          |++++++|||+... +..+++.+|++.
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~atGr~~~~-l~~~~~~~gld~   95 (335)
T 3n28_A           43 YLTPAQFEDMDFFTNRFNAILDMWKVGRYEVALMDGELTSE-HETILKALELDY   95 (335)
T ss_dssp             CCCHHHHHHHHHHHTSCCCEEEEEEETTEEEEEESSCCCHH-HHHHHHHHTCEE
T ss_pred             CCCHHHHHHHHHHhcccccchheeecccceEEEecCCchHH-HHHHHHHcCCCE
Confidence            35677788887776 33          89999999999988 799999999876

>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}

Probab=80.20  E-value=5.3  Score=25.22  Aligned_cols=60  Identities=20%  Similarity=0.144  Sum_probs=41.2

Q ss_pred             CCCceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHH-CCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           20 NLPRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~-~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      +..+.+++|+.++=. |      +.+     ..-...+.+.+++ +|.++.++.  ..+. +...++..|+...|.
T Consensus        46 ~~~~~vvlDls~v~~iD------SsG-----l~~L~~~~~~~~~~~g~~l~l~~--~~~~-v~~~l~~~gl~~~~~  107 (121)
T 3t6o_A           46 AQPRKVLIDLEGVEFFG------SSF-----IELLVRGWKRIKEDQQGVFALCS--VSPY-CVEVLQVTHIDEVWP  107 (121)
T ss_dssp             SSSCEEEEECTTCCEEC------HHH-----HHHHHHHHHHHTTSTTCEEEEES--CCHH-HHHHHTTCSGGGGSC
T ss_pred             cCCCeEEEECCCCCEEc------HHH-----HHHHHHHHHHHHHhcCCEEEEEe--CCHH-HHHHHHHhCccceec
Confidence            346789999998733 3      221     1123446677788 899999884  3345 699999999888774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1u7pa_	164	c.108.1.17 (A:) Magnesium-dependent phosphatase-1,	3e-11
d1nrwa_	285	c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillu	9e-06
d1rlma_	269	c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Esc	1e-04
d2amya1	243	c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (	2e-04
d2b30a1	283	c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmod	2e-04
d2rbka1	260	c.108.1.10 (A:2-261) Sugar-phosphate phosphatase B	4e-04
d1qyia_	380	c.108.1.13 (A:) Hypothetical protein MW1667 (SA154	4e-04
d1l6ra_	225	c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPa	5e-04
d1wr8a_	230	c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPa	0.001
d1xvia_	232	c.108.1.10 (A:) Putative mannosyl-3-phosphoglycera	0.002
d1rkqa_	271	c.108.1.10 (A:) Hypothetical protein YidA {Escheri	0.002

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.4 bits (135), Expect = 3e-11
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 21  LPRLVVFDLDYTLWPFYCECCYEDEI---------------PYLYPHAKGILEALKEKGI 65
           LP+L VFDLDYTLWPF+ +   +                    LYP    +L  L+  G+
Sbjct: 4   LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGV 63

Query: 66  HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKD 104
            VA ASR+     A   L    +   F+   +       
Sbjct: 64  PVAAASRTSEIQGANQLLELFDLGKYFIQREIYPGSKVT 102

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]} Length = 285

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.8 bits (97), Expect = 9e-06
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 14/129 (10%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           +L+  DLD TL         + ++       +  L   +  GI V V++     D+  + 
Sbjct: 2   KLIAIDLDGTL------LNSKHQVS---LENENALRQAQRDGIEVVVSTGRAHFDV-MSI 51

Query: 83  LHKLGIHSMFVPMVVIYMYTKD----SSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEM 138
              LGI +  +      ++  +           +    I  +    +    +F    I  
Sbjct: 52  FEPLGIKTWVISANGAVIHDPEGRLYHHETIDKKRAYDILSWLESENYYYEVFTGSAIYT 111

Query: 139 FQNRHSMLD 147
            QN   +LD
Sbjct: 112 PQNGRELLD 120

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]} Length = 269

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           +++V D+D T           D   Y  P      + LK++GI   VAS +    +  +F
Sbjct: 3   KVIVTDMDGTF--------LNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQL-ISF 53

Query: 83  LHKLGIHSMFVPMVVIYMYTKD 104
             +L     FV      +Y   
Sbjct: 54  FPELKDEISFVAENGALVYEHG 75

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 16/135 (11%), Positives = 32/135 (23%), Gaps = 9/135 (6%)

Query: 22  PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT 81
           P L +FD+D TL           +I          L+ L++K     V          + 
Sbjct: 3   PALCLFDVDGTLTAP------RQKIT---KEMDDFLQKLRQKIKIGVVGGSDFEKVQEQL 53

Query: 82  FLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQN 141
               +  +    P   +  Y         +  +                +   +    + 
Sbjct: 54  GNDVVEKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKR 113

Query: 142 RHSMLDLNSSKNTHK 156
              +   N   N   
Sbjct: 114 GTFIEFRNGMLNVSP 128

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]} Length = 283

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           +L++ D D TL        + D+   +       ++   EKG  V++ +      I   F
Sbjct: 11  KLLLIDFDGTL--------FVDKDIKVPSENIDAIKEAIEKGYMVSICTGRSKVGILSAF 62

Query: 83  LHKLGIHSMFVPMVVIYMY 101
             +      F  M  +Y+ 
Sbjct: 63  GEENLKKMNFYGMPGVYIN 81

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 260

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 12/130 (9%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           + + FD+D TL           E   +       LEA   KG+ + +A+  P   I    
Sbjct: 2   KALFFDIDGTL--------VSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAIINNLS 53

Query: 83  -LHKLGIHSMFVPMVVIYMYTKDS---SNASSSESTCAIFHFHPKRSCSIFMFQQVMIEM 138
            L    +   ++ M   Y +  +     +A   E   A+  F  K+       ++  I +
Sbjct: 54  ELQDRNLIDGYITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIFVEEHNISV 113

Query: 139 FQNRHSMLDL 148
            Q    +  +
Sbjct: 114 CQPNEMVKKI 123

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} Length = 380

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 1/73 (1%)

Query: 42  YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMY 101
           Y++ I       K +L  LK  G  + +A+  P           LG+   F    +    
Sbjct: 209 YQEIILRPVDEVKVLLNDLKGAGFELGIATGRP-YTETVVPFENLGLLPYFEADFIATAS 267

Query: 102 TKDSSNASSSEST 114
               +     ++ 
Sbjct: 268 DVLEAENMYPQAR 280

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 225

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.5 bits (83), Expect = 5e-04
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           RL   D+D  L          D    +   A   + + ++KG+ V++ S +  P +    
Sbjct: 4   RLAAIDVDGNLT---------DRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVV-YAL 53

Query: 83  LHKLGIHSMFVPMVVIYMYTKD 104
              LGI+          M+  D
Sbjct: 54  KIFLGINGPVFGENGGIMFDND 75

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]} Length = 230

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 11/102 (10%), Positives = 30/102 (29%), Gaps = 9/102 (8%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           + +  D+D T+               ++  A   +   +  GI + + + +         
Sbjct: 3   KAISIDIDGTIT---------YPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAAS 53

Query: 83  LHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKR 124
           +       +         Y K     +S +    +++   KR
Sbjct: 54  ILIGTSGPVVAEDGGAISYKKKRIFLASMDEEWILWNEIRKR 95

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT 81
          P LV  DLD TL          D   Y +  A   L  L+E  + V + S   + ++   
Sbjct: 4  PLLVFSDLDGTLL---------DSHSYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYL 54

Query: 82 F--LHKLGIHSMFVPMVVIY 99
             L   G+  +     VI 
Sbjct: 55 QKTLGLQGLPLIAENGAVIQ 74

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]} Length = 271

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
          +L+  D+D TL               + P  K  + A + +G++V + +  P   +   +
Sbjct: 5  KLIAIDMDGTLL---------LPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGV-HNY 54

Query: 83 LHKLGIHSMFVPMV 96
          L +L +       +
Sbjct: 55 LKELHMEQPGDYCI 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	99.83
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	99.81
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	99.78
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	99.78
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	99.76
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	99.73
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	99.73
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	99.73
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	99.73
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	99.72
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	99.72
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	99.69
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	99.66
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	99.64
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	99.64
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	99.63
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	99.62
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	99.62
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	99.61
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	99.57
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	99.5
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	99.49
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	99.38
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	99.34
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	99.3
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.29
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	99.28
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	99.27
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	99.25
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	99.23
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	99.23
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	99.18
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	99.15
d2g80a1	225	Protein UTR4 {Baker's yeast (Saccharomyces cerevis	99.14
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	99.1
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	99.09
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	99.09
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	99.09
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	99.02
d2rbka1	260	Sugar-phosphate phosphatase BT4131 {Bacteroides th	99.0
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	98.95
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	98.94
d1k1ea_	177	Probable phosphatase YrbI {Haemophilus influenzae,	98.91
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	98.78
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	98.78
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	98.76
d1xpja_	124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	98.74
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	98.66
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	98.54
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	98.54
d1rkua_	206	Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta	98.38
d2b8ea1	135	Cation-transporting ATPase {Archaeon Archaeoglobus	98.21
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	98.17
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	98.13
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	98.07
d1wpga2	168	Calcium ATPase, catalytic domain P {Rabbit (Orycto	97.84
d1q92a_	195	5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo	97.41
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	95.16
d2bdea1	458	Cytosolic IMP-GMP specific 5'-nucleotidase {Legion	94.18
d1vc1a_	110	Anti-sigma factor antagonist SpoIIaa {Thermotoga m	90.75
d1h4xa_	111	Anti-sigma factor antagonist SpoIIaa {Bacillus sph	90.5
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	89.91
d1th8b_	115	Anti-sigma factor antagonist SpoIIaa {Bacillus ste	89.44
d1jx7a_	117	Hypothetical protein YchN {Escherichia coli [TaxId	87.02
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	86.12
d2bufa1	300	N-acetyl-l-glutamate kinase {Pseudomonas aeruginos	84.75
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	80.78

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4.2e-20  Score=128.23  Aligned_cols=118  Identities=26%  Similarity=0.402  Sum_probs=93.1

Q ss_pred             CCCCceEEEecCCcccccccccc---------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECC---------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~---------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l   83 (156)
                      ++.+|+|+||+|||||+.+...+               ...+...++||+.++|+.|+++|++++||||++....++..+
T Consensus         2 ~~~pK~viFDlDGTL~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~pgv~e~L~~L~~~G~~~~v~S~~~~~~~~~~~l   81 (164)
T d1u7pa_           2 TRLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLL   81 (164)
T ss_dssp             CCCCSEEEECCBTTTBSSCTTTTCCSCEEECTTSCEEETTCCEECCCTTHHHHHHHHHHTTCCEEEEECCSCHHHHHHHH
T ss_pred             CCCCCEEEEcCCCcccCCccccccCccHhHHhcchHhhhhccccccchHHHHHHHHHHHCCCcEEEEeccccchhhccch
Confidence            45579999999999999766633               234445799999999999999999999999887755357778


Q ss_pred             HHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhcccc
Q 031610           84 HKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHS  144 (156)
Q Consensus        84 ~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  144 (156)
                      +.+++..+|..+...     .||+|..+..+++++++.|+++..   ++|....+-.++..
T Consensus        82 ~~~~~~~~~~~~~~~-----~kp~~~~~~~~~~~~~~~~~~~l~---igD~~~di~aA~~a  134 (164)
T d1u7pa_          82 ELFDLGKYFIQREIY-----PGSKVTHFERLHHKTGVPFSQMVF---FDDENRNIIDVGRL  134 (164)
T ss_dssp             HHTTCGGGCSEEEES-----SSCHHHHHHHHHHHHCCCGGGEEE---EESCHHHHHHHHTT
T ss_pred             hcccccccceeeecc-----cCCChHHHHHHHHHhCCChHHEEE---EcCCHHHHHHHHHc
Confidence            899998888876553     589999999999999999998754   44554444444443

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=5.2e-20  Score=131.90  Aligned_cols=81  Identities=17%  Similarity=0.200  Sum_probs=75.7

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++||+.++|+.|+++|++++|+||++... +...++.+|+..+|+.++++++.+..||+|..+..+++++++.|++++.
T Consensus        88 ~~~pg~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~l~~~~l~~~F~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~  166 (218)
T d1te2a_          88 PLLPGVREAVALCKEQGLLVGLASASPLHM-LEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVA  166 (218)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEECTTSSCCTTSTHHHHHHHHHHTSCGGGEEE
T ss_pred             cccchHHHHHHHhhhccccccccccccccc-cccccccccccccccccccccccccchhhHHHHHHHHHHcCCCchhcEE
Confidence            478999999999999999999999999887 7999999999999999999999999999999999999999999999865


Q ss_pred             Ee
Q 031610          128 IF  129 (156)
Q Consensus       128 v~  129 (156)
                      |+
T Consensus       167 ig  168 (218)
T d1te2a_         167 LE  168 (218)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.78  E-value=3.3e-19  Score=126.66  Aligned_cols=82  Identities=18%  Similarity=0.223  Sum_probs=74.4

Q ss_pred             CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ...++||+.++|+.|+++|++++|+||+.. . +...++++|+..+|+.++++++....||+|+++..++++++++|+++
T Consensus        80 ~~~~~pgv~~~L~~L~~~g~~~~v~Sn~~~-~-~~~~l~~~gl~~~f~~i~~s~~~~~~Kp~~~~~~~~~~~~~~~p~~~  157 (204)
T d2go7a1          80 QVVLMPGAREVLAWADESGIQQFIYTHKGN-N-AFTILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNT  157 (204)
T ss_dssp             GCEECTTHHHHHHHHHHTTCEEEEECSSCT-H-HHHHHHHHTCGGGEEEEECGGGCCCCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             cCcccchHHhhhhcccccccchhhhcccch-h-hhhhhhhcccccccccccccccccccchhHHHHHHHHHHhCCCCceE
Confidence            346899999999999999999999999875 4 47789999999999999999999999999999999999999999988


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      .+|+
T Consensus       158 l~Vg  161 (204)
T d2go7a1         158 YYIG  161 (204)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7655

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=99.78  E-value=5.1e-19  Score=126.60  Aligned_cols=84  Identities=27%  Similarity=0.398  Sum_probs=77.9

Q ss_pred             CCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcC
Q 031610           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKR  124 (156)
Q Consensus        45 ~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~  124 (156)
                      ....++|++.++|+.|+++|++++++||.+... +...++++|+..+|+.++++++.+..||+|.++..+++++++.|++
T Consensus        92 ~~~~l~~~~~~~L~~L~~~g~~~~i~tn~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~  170 (224)
T d2hsza1          92 NISRLYPNVKETLEALKAQGYILAVVTNKPTKH-VQPILTAFGIDHLFSEMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQ  170 (224)
T ss_dssp             SSCEECTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCGGGCSEEECTTTSSSCTTSSHHHHHHHHHHTCCGGG
T ss_pred             cccchHHHHHHHHHHHhccCCcccccccccHHH-HHHHHHhcCchhhccccccccccccccccchhhHHHHHHhhhhhhc
Confidence            345799999999999999999999999999888 7999999999999999999999999999999999999999999999


Q ss_pred             ceeEe
Q 031610          125 SCSIF  129 (156)
Q Consensus       125 ~~~v~  129 (156)
                      +++|+
T Consensus       171 ~~~ig  175 (224)
T d2hsza1         171 ILFVG  175 (224)
T ss_dssp             EEEEE
T ss_pred             cchhc
Confidence            87654

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=99.76  E-value=4.4e-19  Score=126.37  Aligned_cols=82  Identities=10%  Similarity=0.097  Sum_probs=74.6

Q ss_pred             CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ..+++||+.++|++|++ +++++|+||+.... +...++.+++..+|+.++++++.+..||+|.++..+++++++.|+++
T Consensus        80 ~~~~~~g~~~~L~~l~~-~~~~~ivT~~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~  157 (207)
T d2hdoa1          80 QIELYPGITSLFEQLPS-ELRLGIVTSQRRNE-LESGMRSYPFMMRMAVTISADDTPKRKPDPLPLLTALEKVNVAPQNA  157 (207)
T ss_dssp             GCEECTTHHHHHHHSCT-TSEEEEECSSCHHH-HHHHHTTSGGGGGEEEEECGGGSSCCTTSSHHHHHHHHHTTCCGGGE
T ss_pred             ccccccchhhhhhhhcc-cccccccccccccc-cccccccccccccccccccccccccchhhhhhhcccccceeeeccce
Confidence            35699999999999975 69999999999887 79999999999999999999999999999999999999999999998


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      .+|+
T Consensus       158 l~Vg  161 (207)
T d2hdoa1         158 LFIG  161 (207)
T ss_dssp             EEEE
T ss_pred             eEec
Confidence            7654

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=99.73  E-value=4.7e-18  Score=124.55  Aligned_cols=82  Identities=9%  Similarity=0.031  Sum_probs=71.9

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC-ceEEEecccCCCCCCHHHHHHHHHHhCCCC-cC
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPMVVIYMYTKDSSNASSSESTCAIFHFHP-KR  124 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f-~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~-~~  124 (156)
                      ..++||+.++|+.|+++|++++|+||.+... +...++.+++..+| +.++++++.+..||+|.++..+++++++.| ++
T Consensus        98 ~~~~~g~~~~L~~Lk~~g~~i~i~Tn~~~~~-~~~~l~~~~l~~~f~d~~~~~d~~~~~KP~p~~~~~~~~~l~~~p~~~  176 (257)
T d1swva_          98 ASPINGVKEVIASLRERGIKIGSTTGYTREM-MDIVAKEAALQGYKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNH  176 (257)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEBCSSCHHH-HHHHHHHHHHTTCCCSCCBCGGGSSCCTTSSHHHHHHHHHHTCCSGGG
T ss_pred             CccCCcHHHHHHHHHhcccceeecCCCchhh-HHHHHHHHhhcccccccccccccccccccChHHHHHHHHHhCCCCcce
Confidence            3689999999999999999999999999887 79999999999987 667788888999999999999999999976 55


Q ss_pred             ceeEe
Q 031610          125 SCSIF  129 (156)
Q Consensus       125 ~~~v~  129 (156)
                      +.+|+
T Consensus       177 ~v~Vg  181 (257)
T d1swva_         177 MIKVG  181 (257)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44433

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.73  E-value=7.1e-18  Score=118.59  Aligned_cols=92  Identities=16%  Similarity=0.187  Sum_probs=75.2

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++||+.++|+.|+++|++++++||++..  +.+.++.+++..+|+.++++++....||+|+.+..+++++++.+  + 
T Consensus        78 ~~~~~gv~~~l~~l~~~g~~~~i~Sn~~~~--~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~--~-  152 (187)
T d2fi1a1          78 PILFEGVSDLLEDISNQGGRHFLVSHRNDQ--VLEILEKTSIAAYFTEVVTSSSGFKRKPNPESMLYLREKYQISS--G-  152 (187)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCTH--HHHHHHHTTCGGGEEEEECGGGCCCCTTSCHHHHHHHHHTTCSS--E-
T ss_pred             CcccchhHHHHHHHHhhhccccccccCccc--hhhhhhhhccccccccccccccccccCCCHHHHHHHHHHcCCCC--e-
Confidence            468999999999999999999999998764  35679999999999999999988999999999999999998643  3 


Q ss_pred             eEeeehhhhHHHhhccccc
Q 031610          127 SIFMFQQVMIEMFQNRHSM  145 (156)
Q Consensus       127 ~v~~~~~~~~~~~~~~~~~  145 (156)
                        +|++|....+-.++..+
T Consensus       153 --l~vgDs~~Di~aA~~aG  169 (187)
T d2fi1a1         153 --LVIGDRPIDIEAGQAAG  169 (187)
T ss_dssp             --EEEESSHHHHHHHHHTT
T ss_pred             --EEEeCCHHHHHHHHHcC
Confidence              34555544444444443

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=99.73  E-value=7.2e-18  Score=120.76  Aligned_cols=81  Identities=16%  Similarity=0.202  Sum_probs=73.0

Q ss_pred             CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ...++||+.++|+.|++.|++++++||+..   ....++.+++..+|+.++++++.+..||+|+.++.++++++++|+++
T Consensus        89 ~~~~~~g~~~~l~~l~~~~~~i~i~s~~~~---~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~l~~~~i~~~~~  165 (221)
T d1o08a_          89 PADVYPGILQLLKDLRSNKIKIALASASKN---GPFLLERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSES  165 (221)
T ss_dssp             GGGBCTTHHHHHHHHHHTTCEEEECCSCTT---HHHHHHHTTCGGGCSEECCTTTSSSCTTSTHHHHHHHHHTTCCGGGE
T ss_pred             cccccCCceeccccccccccceEEEeecch---hhHHHHhhccccccccccccccccccccChHHHHHHHHHcCCCCceE
Confidence            346899999999999999999999998753   47888999999999999999999999999999999999999999998


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      ++|+
T Consensus       166 l~Vg  169 (221)
T d1o08a_         166 IGLE  169 (221)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6544

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=2.1e-18  Score=124.69  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=73.0

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS  127 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~  127 (156)
                      .++||+.++|++|+ +|++++++||.+... ....++.+|+..+|+.++++++.+..||+|++|..+++++|+.|+++..
T Consensus       100 ~~~p~~~~~L~~l~-~~~~i~i~Sn~~~~~-~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~l~~~p~~~l~  177 (230)
T d1x42a1         100 ELYPEVVEVLKSLK-GKYHVGMITDSDTEY-LMAHLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVY  177 (230)
T ss_dssp             CBCTTHHHHHHHHB-TTBEEEEEESSCHHH-HHHHHHHHTCGGGCSEEEEHHHHTBCTTSHHHHHHHHHHHTCCGGGEEE
T ss_pred             cccccHHHHHHHhh-ccCceeeeecccccc-chhhhcccccccccccccccccccccchhhHHHHHHHhhhcccccccce
Confidence            57899999999996 579999999998877 6899999999999999999999999999999999999999999998765


Q ss_pred             Ee
Q 031610          128 IF  129 (156)
Q Consensus       128 v~  129 (156)
                      |+
T Consensus       178 vg  179 (230)
T d1x42a1         178 VG  179 (230)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=5.6e-18  Score=123.26  Aligned_cols=81  Identities=14%  Similarity=0.187  Sum_probs=73.2

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|+.|+ +|++++++||.+... ....++.+|+..+|+.++++++.+..||+|.++..+++++++.|++++
T Consensus       108 ~~~~~~~~~~L~~L~-~~~~l~i~Tn~~~~~-~~~~l~~~gl~~~fd~i~~s~~~~~~KP~p~~~~~~~~~~~~~~~~~l  185 (247)
T d2gfha1         108 MILADDVKAMLTELR-KEVRLLLLTNGDRQT-QREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCV  185 (247)
T ss_dssp             CCCCHHHHHHHHHHH-TTSEEEEEECSCHHH-HHHHHHHHTCGGGCSEEEEGGGSSSCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred             CccCccHHHHHHHhh-cccceEEeecccchh-hhhhhhhccccccccccccccccccchhhhhhHHHHHHHhhcCHHhcc
Confidence            358899999999998 589999999998777 688899999999999999999999999999999999999999999876


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      .|+
T Consensus       186 ~iG  188 (247)
T d2gfha1         186 MVG  188 (247)
T ss_dssp             EEE
T ss_pred             eec
Confidence            544

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=99.72  E-value=1.8e-17  Score=118.30  Aligned_cols=82  Identities=11%  Similarity=0.135  Sum_probs=76.2

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..+++++.++++.++++|++++++||..... ....++..++..+|+.++++++.+..||+|+.+..+++++|+.|+++.
T Consensus        92 ~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~-~~~~~~~~~~~~~fd~~~~s~~~~~~KP~p~~~~~~~~~~g~~p~e~l  170 (220)
T d1zrna_          92 LAPFSEVPDSLRELKRRGLKLAILSNGSPQS-IDAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAIL  170 (220)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEESGGGTCCTTSHHHHHHHHHHHTSCGGGEE
T ss_pred             ccccchhHHHHHHHHhcCCeEEeecchHHHH-HHHHHhhccccccccceeeeeeeeccccHHHHHHHHHHHhCCCCceEE
Confidence            4688999999999999999999999999887 789999999999999999999999999999999999999999999987


Q ss_pred             eEe
Q 031610          127 SIF  129 (156)
Q Consensus       127 ~v~  129 (156)
                      .|+
T Consensus       171 ~Vg  173 (220)
T d1zrna_         171 FVA  173 (220)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            654

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=99.69  E-value=8.2e-17  Score=116.46  Aligned_cols=91  Identities=12%  Similarity=0.121  Sum_probs=76.2

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC  126 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~  126 (156)
                      ..++|++.++|++|+  ++.++++||.+... +...++.+++..+|+.++++++.+..||+|++|..+++++|+.|++++
T Consensus        92 ~~~~~~~~~~L~~l~--~~~~~v~s~~~~~~-~~~~~~~~~~~~~fd~v~~s~~~~~~KP~p~~f~~a~~~lg~~p~e~l  168 (245)
T d1qq5a_          92 LTPYPDAAQCLAELA--PLKRAILSNGAPDM-LQALVANAGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVL  168 (245)
T ss_dssp             CCBCTTHHHHHHHHT--TSEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEEGGGGTCCTTSHHHHHHHHHHHCCCGGGEE
T ss_pred             cccchhhhHHHHHHh--hhceeEEeccchHH-HHHHHhhcccccccccccccccccccCccHHHHHHHHHHhCCChhhEE
Confidence            468899999999885  67899999999887 689999999999999999999999999999999999999999999876


Q ss_pred             eEeeehhhhHHHhhccc
Q 031610          127 SIFMFQQVMIEMFQNRH  143 (156)
Q Consensus       127 ~v~~~~~~~~~~~~~~~  143 (156)
                      .|+   |+...+..++.
T Consensus       169 ~Vg---D~~~di~~A~~  182 (245)
T d1qq5a_         169 FVS---SNGFDVGGAKN  182 (245)
T ss_dssp             EEE---SCHHHHHHHHH
T ss_pred             EEe---CCHHHHHHHHH
Confidence            543   44344444433

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.6e-16  Score=113.30  Aligned_cols=82  Identities=7%  Similarity=0.026  Sum_probs=71.0

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE-EecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-VIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~-~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ..++|++.++|+.|+++|++++++||++... ....++.+++..+|.... +.++....||+|.++..+++++++.|+++
T Consensus       126 ~~~~pg~~e~l~~L~~~g~~l~i~Tn~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~KP~p~~~~~~~~~~~~~p~~~  204 (253)
T d1zs9a1         126 AEFFADVVPAVRKWREAGMKVYIYSSGSVEA-QKLLFGHSTEGDILELVDGHFDTKIGHKVESESYRKIADSIGCSTNNI  204 (253)
T ss_dssp             BCCCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHTBTTBCCGGGCSEEECGGGCCTTCHHHHHHHHHHHTSCGGGE
T ss_pred             cccCCCHHHHHHHHhhccCceeecCCCcHHH-HHHHHHHcCcchhhhhcceeeccccccCCCcHHHHHHHHHhCCCcCcE
Confidence            3579999999999999999999999999877 688889999988887644 33556678999999999999999999998


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      ++|+
T Consensus       205 l~vg  208 (253)
T d1zs9a1         205 LFLT  208 (253)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6654

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.64  E-value=1.8e-16  Score=114.07  Aligned_cols=83  Identities=12%  Similarity=0.085  Sum_probs=72.5

Q ss_pred             CcccCCcHHHHHHHHHHCC-CeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHh---CCC
Q 031610           46 IPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIF---HFH  121 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G-~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~---~~~  121 (156)
                      ...++||+.++|+.|+++| ++++|+||+.... +...++.+|+..+|+.++++++....||.|.++...++.+   ++.
T Consensus        89 ~~~~~~g~~~~L~~L~~~g~~~~~v~t~~~~~~-~~~~l~~~gl~~~fd~i~~~~~~~~~k~~p~~~~~~~~~~~~~~~~  167 (228)
T d2hcfa1          89 DITLLEGVRELLDALSSRSDVLLGLLTGNFEAS-GRHKLKLPGIDHYFPFGAFADDALDRNELPHIALERARRMTGANYS  167 (228)
T ss_dssp             GEEECTTHHHHHHHHHTCTTEEEEEECSSCHHH-HHHHHHTTTCSTTCSCEECTTTCSSGGGHHHHHHHHHHHHHCCCCC
T ss_pred             CceecCchHHHHhhhhccccccccccCCCcchh-hhhhhhhhcccccccccccccccccccchhHHHHHHhhhhcccCCC
Confidence            3468999999999999987 8999999999887 7999999999999999999988888999999887776666   678


Q ss_pred             CcCceeEe
Q 031610          122 PKRSCSIF  129 (156)
Q Consensus       122 ~~~~~~v~  129 (156)
                      |+++.+|+
T Consensus       168 p~~~l~VG  175 (228)
T d2hcfa1         168 PSQIVIIG  175 (228)
T ss_dssp             GGGEEEEE
T ss_pred             hhHheeec
Confidence            88876654

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.64  E-value=2.3e-16  Score=111.92  Aligned_cols=80  Identities=16%  Similarity=0.212  Sum_probs=69.7

Q ss_pred             CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ...+++++.++|+.++.+ ++++++||.+... ++..++.+|+..+|+.++++++.  .+|+|.++..+++++++.|+++
T Consensus        82 ~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~gl~~~fd~v~~~~~~--~~~~p~~~~~~~~~~~~~~~~~  157 (210)
T d2ah5a1          82 EAQLFPQIIDLLEELSSS-YPLYITTTKDTST-AQDMAKNLEIHHFFDGIYGSSPE--APHKADVIHQALQTHQLAPEQA  157 (210)
T ss_dssp             SCEECTTHHHHHHHHHTT-SCEEEEEEEEHHH-HHHHHHHTTCGGGCSEEEEECSS--CCSHHHHHHHHHHHTTCCGGGE
T ss_pred             cccchhHHHHHHhhhhcc-cchhhcccccchh-hhHHHHhhccccccccccccccc--ccccccccchhhhhhhcccccc
Confidence            347899999999999876 5999999999887 79999999999999998877664  5888999999999999999987


Q ss_pred             eeEe
Q 031610          126 CSIF  129 (156)
Q Consensus       126 ~~v~  129 (156)
                      .+|+
T Consensus       158 v~VG  161 (210)
T d2ah5a1         158 IIIG  161 (210)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            6543

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=6.9e-17  Score=111.77  Aligned_cols=106  Identities=14%  Similarity=0.050  Sum_probs=71.4

Q ss_pred             CceEEEecCCcccccccc--ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCCh--------h------HHHHHHHH
Q 031610           22 PRLVVFDLDYTLWPFYCE--CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP--------D------IAKTFLHK   85 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~--~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~--------~------~~~~~l~~   85 (156)
                      .|+||||+||||+...-.  .....+...++||+.++|+.|+++|++++++||++.-        .      .....+..
T Consensus         2 ~K~i~~D~DGtL~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~i~TNq~~ia~~~~~~~~~~~~~~~l~~~l~~   81 (161)
T d2fpwa1           2 QKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTS   81 (161)
T ss_dssp             CEEEEECCBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTSTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCCeEeeCCCCCccCCHHHceECccHHHHHHHHHHcCCceeeecccccchhHHHHHHHhhhhhhhhhhhccc
Confidence            489999999999873211  1122233478999999999999999999999997621        0      01334444


Q ss_pred             cCCCCCCceEE-----EecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           86 LGIHSMFVPMV-----VIYMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        86 l~l~~~f~~~~-----~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      .++.  ++.++     ..++....||+|.++..++++++++|+++++|+
T Consensus        82 ~~~~--~~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~~~id~~~~~~IG  128 (161)
T d2fpwa1          82 QGVQ--FDEVLICPHLPADECDCRKPKVKLVERYLAEQAMDRANSYVIG  128 (161)
T ss_dssp             TTCC--EEEEEEECCCGGGCCSSSTTSSGGGGGGC----CCGGGCEEEE
T ss_pred             cccc--cceeeeccccccccccccccccHHHHHHHHhcCCChhcEEEEC
Confidence            4542  22222     234567789999999999999999999987766

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=99.62  E-value=5.3e-16  Score=111.45  Aligned_cols=109  Identities=14%  Similarity=0.083  Sum_probs=75.6

Q ss_pred             CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC--------hh---H---HHHHH
Q 031610           18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA--------PD---I---AKTFL   83 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~--------~~---~---~~~~l   83 (156)
                      .++++++||||+||||.... ......+...++||+.++|+.|+++|++++|+||++.        ..   .   ....+
T Consensus        19 ~p~~~~Aif~DrDGtl~~~~-~y~~~~~~~~l~pgv~e~L~~L~~~G~~l~IvTNQ~gi~~g~~~~~~~~~~~~~~~~~l   97 (209)
T d2o2xa1          19 FPPHLPALFLDRDGTINVDT-DYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELL   97 (209)
T ss_dssp             CCSSCCCEEECSBTTTBCCC-SCTTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCeECCC-CCCCCHHHeEecccHHHHHHHHHhhCCeEEEecccccchhhhhhhhhhhhhhhHHHHHh
Confidence            56677899999999997521 1112223357999999999999999999999999651        00   0   12223


Q ss_pred             HHcCCCCCCceEEEec------------ccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           84 HKLGIHSMFVPMVVIY------------MYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        84 ~~l~l~~~f~~~~~~~------------~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      +..|+  .++.++...            +....||+|.++..++++++++++++++|+
T Consensus        98 ~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~rKP~p~ml~~a~~~~~i~~~~~~~VG  153 (209)
T d2o2xa1          98 REEGV--FVDMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRLALDLQRSLIVG  153 (209)
T ss_dssp             HHTTC--CCSEEEEECCCTTCCSTTCCSSCTTSTTSCHHHHHHHHHHTCCGGGCEEEE
T ss_pred             hhccc--ccceEEEecccccccccccccccccccccchhhhHhHHHhCCCccceEEeC
Confidence            33343  233332221            234469999999999999999999998776

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.5e-16  Score=112.27  Aligned_cols=82  Identities=10%  Similarity=-0.023  Sum_probs=70.2

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChh---HHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPD---IAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKR  124 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~---~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~  124 (156)
                      .++|++.++|++|+++|++++++|+.....   .....+...++..+|+.++++++.+..||+|+++..+++++++.|++
T Consensus        97 ~~~~~~~~~L~~L~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~l~~~fd~i~~s~~~~~~KP~p~~~~~~~~~~~v~p~~  176 (222)
T d1cr6a1          97 SINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQHFDFLIESCQVGMIKPEPQIYNFLLDTLKAKPNE  176 (222)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEECCCCCCSSSHHHHHHHHHHHGGGCSEEEEHHHHSCCTTCHHHHHHHHHHHTSCTTS
T ss_pred             CCCccHHHHHHHHHhcCCceEEeeccccccHHHHHHHHHHhcChHhhhceeeehhhccCCCCChHHHHHHHHHhCCCcce
Confidence            578999999999999999999999754321   13555667889999999999999999999999999999999999999


Q ss_pred             ceeEe
Q 031610          125 SCSIF  129 (156)
Q Consensus       125 ~~~v~  129 (156)
                      +.+|+
T Consensus       177 ~l~Ig  181 (222)
T d1cr6a1         177 VVFLD  181 (222)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87654

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.8e-16  Score=112.40  Aligned_cols=82  Identities=9%  Similarity=-0.046  Sum_probs=69.0

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChh---HHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcC
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPD---IAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKR  124 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~---~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~  124 (156)
                      .++|++.++|..|+++|++++++||.....   .........++..+|+.++++++.+..||+|+++..+++.+++.|++
T Consensus        99 ~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~e  178 (225)
T d1zd3a1          99 KINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKASPSE  178 (225)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTTSSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGGG
T ss_pred             CCCccHHHHHHHHHhccCccccccccchhhHHHHHHHHhhhcChHhhccEEEeccccccchhHHHHHHHHhhhcccCccc
Confidence            588999999999999999999999875443   12333445678889999999999999999999999999999999999


Q ss_pred             ceeEe
Q 031610          125 SCSIF  129 (156)
Q Consensus       125 ~~~v~  129 (156)
                      +..|+
T Consensus       179 ~l~Vg  183 (225)
T d1zd3a1         179 VVFLD  183 (225)
T ss_dssp             EEEEE
T ss_pred             eeEEe
Confidence            76543

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.2e-14  Score=101.87  Aligned_cols=105  Identities=11%  Similarity=-0.016  Sum_probs=73.4

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh-----------H---HHHHHHHcC
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD-----------I---AKTFLHKLG   87 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~-----------~---~~~~l~~l~   87 (156)
                      +++||||+||||.... ......+..+++||+.++|+.|+++|++++++||++...           +   ....+...+
T Consensus         2 ~~Av~~DrDGtl~~~~-~y~~~~~~~~~~~gv~e~l~~L~~~g~~~~ivTNq~~i~~~~~~~~~~~~~~~~~~~~~~~~~   80 (182)
T d2gmwa1           2 VPAIFLDRDGTINVDH-GYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRD   80 (182)
T ss_dssp             BCEEEECSBTTTBCCC-SSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCCccCCC-CCCCCHHHeeECCCHHHHHHHHhhcCchhhhhhccchhhhhhhHHHhhhhhhhhhhhhhhhhc
Confidence            6899999999997421 111223345799999999999999999999999987311           0   112222233


Q ss_pred             CCCCCce-EEEe-----------cccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           88 IHSMFVP-MVVI-----------YMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        88 l~~~f~~-~~~~-----------~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      +  .+.. .+|.           .+....||+|.++..++++++++++++++|+
T Consensus        81 ~--~~~~~~~cp~~p~~~~~~~~~~~~~rKP~p~m~~~~~~~~~i~~~~s~mVG  132 (182)
T d2gmwa1          81 V--DLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVG  132 (182)
T ss_dssp             C--CCSEEEEECCBTTCSSGGGBSCCSSSTTSCHHHHHHHHHHTBCGGGCEEEE
T ss_pred             c--cccceeecccccccccccccccccccCCccccccchhhhcccccccccccC
Confidence            3  2222 2232           1345579999999999999999999998766

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.50  E-value=5.6e-15  Score=105.45  Aligned_cols=79  Identities=18%  Similarity=0.177  Sum_probs=65.7

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEec---ccCCCCCCHHHHHHHHHHhCCCCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIY---MYTKDSSNASSSESTCAIFHFHPK  123 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~---~~~~~kp~p~~~~~~~~~~~~~~~  123 (156)
                      ..++|++.++|++|+.   +.+++|+..... +...++.+++..+|+..+++.   .....||+|+.+..+++++++.|+
T Consensus        84 ~~~~~g~~~~L~~l~~---~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~  159 (222)
T d2fdra1          84 VKIIDGVKFALSRLTT---PRCICSNSSSHR-LDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPD  159 (222)
T ss_dssp             CCBCTTHHHHHHHCCS---CEEEEESSCHHH-HHHHHHHTTCGGGTTTCEEEHHHHCTTCCTTSSHHHHHHHHHHTCCGG
T ss_pred             cchhhhHHHHhhhccc---cceeeeecchhh-hhhhhcccccccccceeecccccccccccccCHHHHHHHHHhhCCCCc
Confidence            3588999999988854   557899999887 799999999999998765543   246789999999999999999999


Q ss_pred             CceeEe
Q 031610          124 RSCSIF  129 (156)
Q Consensus       124 ~~~~v~  129 (156)
                      ++..|+
T Consensus       160 ~~l~vg  165 (222)
T d2fdra1         160 RVVVVE  165 (222)
T ss_dssp             GEEEEE
T ss_pred             eEEEEc
Confidence            886544

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=3.4e-15  Score=103.40  Aligned_cols=95  Identities=15%  Similarity=0.107  Sum_probs=77.1

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc-CCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS  125 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l-~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  125 (156)
                      ..+++++.+++..++++|++++++||.+... ....+..+ ++..+|+.++++++.+..||+|+.+..+++.+++.|+++
T Consensus        83 ~~~~~~~~~l~~~l~~~~~~~~i~t~~~~~~-~~~~~~~~~~l~~~fd~v~~s~~~~~~Kp~~~~~~~~~~~~~~~~~~~  161 (197)
T d2b0ca1          83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLH-TTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDT  161 (197)
T ss_dssp             EEECHHHHHHHHHHHHTTCEEEEEECCCCCT-TSCCGGGCHHHHHHCSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGGGE
T ss_pred             cccCchhHHHHHHHHhcCCeEEEEeCccHHH-HHHHHHHcccchhhccceeecccccccccchHHHHHHHHhcCCCCCeE
Confidence            4688999999999999999999999988766 45555654 788899999999999999999999999999999999886


Q ss_pred             eeEeeehhhhHHHhhccccc
Q 031610          126 CSIFMFQQVMIEMFQNRHSM  145 (156)
Q Consensus       126 ~~v~~~~~~~~~~~~~~~~~  145 (156)
                      ..   ++|+...+-.++..+
T Consensus       162 l~---vgDs~~di~~A~~aG  178 (197)
T d2b0ca1         162 VF---FDDNADNIEGANQLG  178 (197)
T ss_dssp             EE---EESCHHHHHHHHTTT
T ss_pred             EE---EeCCHHHHHHHHHcC
Confidence            54   445544444444444

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.38  E-value=7.4e-13  Score=89.10  Aligned_cols=120  Identities=13%  Similarity=0.087  Sum_probs=72.4

Q ss_pred             CCCCCceEEEecCCcccccccccc---ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhH--HHHHHHHcC-----
Q 031610           18 FENLPRLVVFDLDYTLWPFYCECC---YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLG-----   87 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~~~---~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~--~~~~l~~l~-----   87 (156)
                      .+..+|+|+||+||||.+......   ..-....++|++.++|+.|+++|++++++|||+....  ....++..+     
T Consensus         3 ~~~kpk~vifDiDgTL~~~~~~~~~~~~~~~~~~~~p~v~~~l~~l~~~G~~Iii~T~R~~~~~~~t~~~l~~~~~~~~~   82 (149)
T d1ltqa1           3 TPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVED   82 (149)
T ss_dssp             CTTSCEEEEEETBTTTBCCSSCCTTCGGGGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCcEeCCCCCcCCccccccCccCHHHHHHHHHHHhccCeEEEEecCcHHHHHHHHHHHHHHhhhhhh
Confidence            356789999999999987411100   1111236899999999999999999999999984320  122233211     


Q ss_pred             CCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhh--hHHHh
Q 031610           88 IHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQV--MIEMF  139 (156)
Q Consensus        88 l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~  139 (156)
                      +.................|.+......+..+...+.+.  +.+++|+  .+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~d~~~k~~~l~~~~~~~~~i--~~~igD~~~dv~a~  134 (149)
T d1ltqa1          83 IAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDV--KLAIDDRTQVVEMW  134 (149)
T ss_dssp             TTCCCCSEEEECCTTCCSCHHHHHHHHHHHHTTTTCEE--EEEEECCHHHHHHH
T ss_pred             cCCCcEEEeecccccccCCchHHHHHHHHHhccCCCce--EEEEcCCHHHHHHH
Confidence            11122222333344445677777777887776665543  3345554  44443

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.3e-12  Score=95.52  Aligned_cols=66  Identities=20%  Similarity=0.342  Sum_probs=57.5

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV   97 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~   97 (156)
                      +|+|+||+||||++      .++   .+.|.+.++|++|+++|+++++||||+... +..+++.+++...+.++++
T Consensus         4 iKli~~DlDGTL~~------~~~---~i~~~~~~al~~L~~~gi~v~i~TGR~~~~-~~~~~~~l~l~~~~~~~i~   69 (271)
T d1rkqa_           4 IKLIAIDMDGTLLL------PDH---TISPAVKNAIAAARARGVNVVLTTGRPYAG-VHNYLKELHMEQPGDYCIT   69 (271)
T ss_dssp             CCEEEECCCCCCSC------TTS---CCCHHHHHHHHHHHHTTCEEEEECSSCGGG-THHHHHHTTCCSTTCEEEE
T ss_pred             eeEEEEeCCccccC------CCC---ccCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHhcCcCCCcEEEE
Confidence            79999999999997      343   477999999999999999999999999998 6999999998877666554

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=9e-12  Score=87.99  Aligned_cols=111  Identities=17%  Similarity=0.145  Sum_probs=77.8

Q ss_pred             CCCCCceEEEecCCccccccc---cccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC--------hh---HHHHHH
Q 031610           18 FENLPRLVVFDLDYTLWPFYC---ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA--------PD---IAKTFL   83 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~---~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~--------~~---~~~~~l   83 (156)
                      ..+.-|+++||+||||+...-   ......+...++|++.++|+.|.++|+.++|+||++.        ..   ....++
T Consensus        17 ~~~~~Kia~fDrDGtLik~~~~~~~~~~~~d~~~l~~~v~~~i~~L~~~gy~iiIvTNQ~gI~rg~~s~~~~~~~~~~i~   96 (195)
T d1yj5a1          17 VKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVL   96 (195)
T ss_dssp             CCCCSCEEEECSBTTTEECSSSCSSCSSTTCCEESCTTHHHHHHHHHHHTCEEEEEEECHHHHHTSSCHHHHHHHHHHHH
T ss_pred             CCCcCcEEEEECCCceEeeCCCCcCCCChhhceeccCCHHHHHHHHHhCCcEEEEecCcchhccCCcCHHHHHHHHHHHH
Confidence            344568999999999985211   1111122223579999999999999999999999751        11   124455


Q ss_pred             HHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhC----CCCcCceeEee
Q 031610           84 HKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH----FHPKRSCSIFM  130 (156)
Q Consensus        84 ~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~----~~~~~~~~v~~  130 (156)
                      +.++..  +...++.......||.|.++..++++++    ++.+++.+|+-
T Consensus        97 ~~l~~~--~~i~~~~~~~~~RKP~~GM~~~~~~~~n~~~~id~~~S~~IGD  145 (195)
T d1yj5a1          97 EKLGVP--FQVLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVGD  145 (195)
T ss_dssp             HHHTSC--CEEEEECSSSSSSTTSTHHHHHHHHTSSSSCCCCGGGCEEECS
T ss_pred             HHcCCC--ccEEEecCccccCCCccHHHHHHHHHhcccccCCcCceEEEeC
Confidence            556543  3445566677789999999999999986    67778877763

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=99.29  E-value=5.3e-13  Score=95.28  Aligned_cols=91  Identities=10%  Similarity=-0.131  Sum_probs=68.6

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE--Ee-----------cccCCCCCCHHHHHH
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV--VI-----------YMYTKDSSNASSSES  113 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~--~~-----------~~~~~~kp~p~~~~~  113 (156)
                      .+++|++.++|+.|+++|++++++|++.... ++.+++.+++..+|.+..  ..           ......++++.....
T Consensus        74 ~~l~pg~~~~l~~L~~~g~~~~ivS~~~~~~-i~~~l~~l~~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~  152 (226)
T d2feaa1          74 AKIREGFREFVAFINEHEIPFYVISGGMDFF-VYPLLEGIVEKDRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGCCKPS  152 (226)
T ss_dssp             CCBCTTHHHHHHHHHHHTCCEEEEEEEEHHH-HHHHHTTTSCGGGEEEEEEECSSSBCEEECTTCCCTTCCSCCSSCHHH
T ss_pred             cchhHHHHHHHHHHHhcccccccCCcchhhh-HHHHHHHcCCccceeeeeEEEeCCcceeccccccccccccCCHHHHHH
Confidence            3589999999999999999999999999887 799999999877764311  10           112224677888999


Q ss_pred             HHHHhCCCCcCceeEeeehhhhHHHh
Q 031610          114 TCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                      +++.++..+.++.+|+ -+.+++.|.
T Consensus       153 ~~~~~~~~~~~~i~iG-Ds~~Dl~~a  177 (226)
T d2feaa1         153 VIHELSEPNQYIIMIG-DSVTDVEAA  177 (226)
T ss_dssp             HHHHHCCTTCEEEEEE-CCGGGHHHH
T ss_pred             HHHHhcCCCceEEEEe-CchhhHHHH
Confidence            9999999998876554 334455554

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.28  E-value=2.2e-12  Score=94.81  Aligned_cols=62  Identities=24%  Similarity=0.358  Sum_probs=54.2

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      +|+|+|||||||++      .++   .+.+.+.++|++|+++|+++++||||+... +...++.+++..++.
T Consensus         1 iKli~~DlDGTLl~------~~~---~i~~~~~~~l~~l~~~Gi~~~i~TGR~~~~-~~~~~~~l~~~~~~i   62 (285)
T d1nrwa_           1 MKLIAIDLDGTLLN------SKH---QVSLENENALRQAQRDGIEVVVSTGRAHFD-VMSIFEPLGIKTWVI   62 (285)
T ss_dssp             CCEEEEECCCCCSC------TTS---CCCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHGGGTCCCEEE
T ss_pred             CeEEEEECCccccC------CCC---ccCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHhCCCcEEE
Confidence            58999999999997      444   467899999999999999999999999988 799999999876543

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.27  E-value=2.3e-12  Score=92.36  Aligned_cols=60  Identities=28%  Similarity=0.449  Sum_probs=51.9

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      |+|+|++|+||||++.      ..     .+.+.++|++|+++|+.+++||||+... +..+++.+++..++
T Consensus         1 miKli~~DlDGTLl~~------~~-----~~~~~~ai~~l~~~G~~~~~aTGR~~~~-~~~~~~~~~~~~~~   60 (243)
T d1wzca1           1 MIRLIFLDIDKTLIPG------YE-----PDPAKPIIEELKDMGFEIIFNSSKTRAE-QEYYRKELEVETPF   60 (243)
T ss_dssp             CEEEEEECCBTTTBSS------SC-----SGGGHHHHHHHHHTTEEEEEECSSCHHH-HHHHHHHHTCCSCE
T ss_pred             CcEEEEEeCCCCCCCC------CC-----CHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHhcccccc
Confidence            7899999999999972      21     2568899999999999999999999988 79999999987654

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=3e-11  Score=88.07  Aligned_cols=45  Identities=27%  Similarity=0.368  Sum_probs=39.8

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~   74 (156)
                      +++|+|+||+||||+++      .    .+.|++.++|++|+++|++++++||++
T Consensus         5 ~~ik~vlFDlDGTL~~~------~----~~i~~a~e~l~~l~~~g~~~~~~TN~~   49 (261)
T d1vjra_           5 DKIELFILDMDGTFYLD------D----SLLPGSLEFLETLKEKNKRFVFFTNNS   49 (261)
T ss_dssp             GGCCEEEECCBTTTEET------T----EECTTHHHHHHHHHHTTCEEEEEESCT
T ss_pred             HhCCEEEEeCCCeeEEC------C----ccCchHHHHHHHHHHcCCCEEEEeCCC
Confidence            57899999999999982      2    466999999999999999999999865

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=4.1e-11  Score=87.12  Aligned_cols=56  Identities=21%  Similarity=0.334  Sum_probs=43.7

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC---hhHHHHHHHHcCC
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---PDIAKTFLHKLGI   88 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~---~~~~~~~l~~l~l   88 (156)
                      +|+|+||+||||++.      .    .+.|++.++|+.|+++|++++++||.+.   .. ....+..+|+
T Consensus         3 ik~VifDlDGTL~~~------~----~~i~~a~e~i~~l~~~g~~~~~~TN~~~~~~~~-~~~~l~~~G~   61 (250)
T d2c4na1           3 IKNVICDIDGVLMHD------N----VAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQD-LANRFATAGV   61 (250)
T ss_dssp             CCEEEEECBTTTEET------T----EECTTHHHHHHHHHHTTCCEEEEESCCSCCHHH-HHHHHHHTTC
T ss_pred             CCEEEEECCCeeEEC------C----CcCccHHHHHHHHHHCCCcEEEEeCCCCCCHHH-HHHHHhhccc
Confidence            799999999999972      2    4678999999999999999999997653   33 3344455554

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=8.4e-12  Score=88.49  Aligned_cols=60  Identities=28%  Similarity=0.389  Sum_probs=51.9

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      +-+||+||||||++      +++   .+.+.++++|++|+++|+++++||||+... +...++.+++...
T Consensus         4 ~~li~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~Gi~~~i~TGR~~~~-~~~~~~~~~~~~~   63 (232)
T d1xvia_           4 PLLVFSDLDGTLLD------SHS---YDWQPAAPWLTRLREANVPVILCSSKTSAE-MLYLQKTLGLQGL   63 (232)
T ss_dssp             CEEEEEECTTTTSC------SSC---CSCCTTHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHHTTCTTS
T ss_pred             CEEEEEECCCCccC------CcC---cCCHHHHHHHHHHHHCCCEEEEEeCCChhh-chhHHHHhccCCc
Confidence            44788999999997      444   477889999999999999999999999988 7999999998643

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.18  E-value=1.8e-11  Score=86.76  Aligned_cols=62  Identities=13%  Similarity=0.094  Sum_probs=53.4

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      ++|+|+||+||||++      +..   .+.+.+.++|++|+++|++++++|||+... +...+..+++...+
T Consensus         1 kiK~i~~D~DGTL~~------~~~---~i~~~~~~~l~~l~~~gi~v~~~TGR~~~~-~~~~~~~~~~~~~~   62 (230)
T d1wr8a_           1 KIKAISIDIDGTITY------PNR---MIHEKALEAIRRAESLGIPIMLVTGNTVQF-AEAASILIGTSGPV   62 (230)
T ss_dssp             CCCEEEEESTTTTBC------TTS---CBCHHHHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHHHTCCSCE
T ss_pred             CceEEEEecCCCCcC------CCC---ccCHHHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHhcCCCccc
Confidence            479999999999997      333   577899999999999999999999999887 68888888876654

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.15  E-value=1.4e-11  Score=88.04  Aligned_cols=64  Identities=22%  Similarity=0.277  Sum_probs=54.7

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~   93 (156)
                      .|+|+++||+||||++      ..+   .+.+++.++|+.|+++|++++++|||+... +..+...+++..++.
T Consensus         1 ~miKli~~D~DGTL~~------~~~---~i~~~~~~al~~l~~~g~~v~~~TGr~~~~-~~~~~~~~~~~~~~i   64 (225)
T d1l6ra_           1 HMIRLAAIDVDGNLTD------RDR---LISTKAIESIRSAEKKGLTVSLLSGNVIPV-VYALKIFLGINGPVF   64 (225)
T ss_dssp             CCCCEEEEEHHHHSBC------TTS---CBCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCCSCEE
T ss_pred             CCeEEEEEecCCCCcC------CCC---cCCHHHHHHHHHHHHCCCEEEEEcCCchhh-hHHHHHHcCCCceEE
Confidence            3899999999999997      344   577899999999999999999999999877 688888888776543

>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: Protein UTR4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=5.1e-11  Score=83.97  Aligned_cols=66  Identities=11%  Similarity=-0.009  Sum_probs=49.2

Q ss_pred             HCCCeEEEEcCCCChhHHHH-----------HHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610           62 EKGIHVAVASRSPAPDIAKT-----------FLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus        62 ~~G~~v~i~T~~~~~~~~~~-----------~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      ..+..+++.|+..... ...           .++.+++..+|+.+++++.. ..||+|.+|..+++++|+.|++++.|+
T Consensus       107 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~Fd~v~~~~~~-~~KP~p~~f~~~~~~lg~~p~e~l~Vg  183 (225)
T d2g80a1         107 KRKKRVFIYSSGSVKA-QKLLFGYVQDPNAPAHDSLDLNSYIDGYFDINTS-GKKTETQSYANILRDIGAKASEVLFLS  183 (225)
T ss_dssp             HHCSCEEEECSSCHHH-HHHHHHSBCCTTCTTSCCBCCGGGCCEEECHHHH-CCTTCHHHHHHHHHHHTCCGGGEEEEE
T ss_pred             hhHHhhhhhhhccchh-hhhhhhhhhhhHHHHHHhcCCccccceeeecccc-CCCCChhHhHHHHHhcccCchhceeec
Confidence            4467788888876432 122           23556888899988776544 469999999999999999999987654

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=6.9e-11  Score=84.36  Aligned_cols=44  Identities=23%  Similarity=0.320  Sum_probs=40.1

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      ..++||+.++++.|+++|++++|+|++.... ++.+++.+|++.+
T Consensus        81 ~~l~pg~~~~i~~lk~~G~~~~ivS~~~~~~-v~~i~~~lgi~~~  124 (217)
T d1nnla_          81 PHLTPGIRELVSRLQERNVQVFLISGGFRSI-VEHVASKLNIPAT  124 (217)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCCGG
T ss_pred             cccCHHHHHHHHHHHhCCCEEEEECCCchHH-HHHHHHHhCCccc
Confidence            4689999999999999999999999999887 7999999999754

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=99.09  E-value=2.7e-11  Score=88.43  Aligned_cols=62  Identities=15%  Similarity=0.109  Sum_probs=51.5

Q ss_pred             CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610           18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (156)
Q Consensus        18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l   88 (156)
                      ....+|+|+||+||||+..     ...   .+.|.+.++|++|+++|++++++|||+... +...++.+++
T Consensus         6 ~~~~ikli~~DlDGTLl~~-----~~~---~i~~~~~~al~~l~~~Gi~v~i~TGR~~~~-~~~~~~~l~~   67 (283)
T d2b30a1           6 KGADIKLLLIDFDGTLFVD-----KDI---KVPSENIDAIKEAIEKGYMVSICTGRSKVG-ILSAFGEENL   67 (283)
T ss_dssp             TTCCCCEEEEETBTTTBCC-----TTT---CSCHHHHHHHHHHHHHTCEEEEECSSCHHH-HHHHHCHHHH
T ss_pred             cccCccEEEEECCCCCcCC-----CCC---cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCc
Confidence            3457899999999999841     222   578999999999999999999999999888 6888777654

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.2e-11  Score=90.20  Aligned_cols=62  Identities=26%  Similarity=0.324  Sum_probs=50.6

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f   92 (156)
                      ||+|+||+||||++      +.+.  .+.|.+.++|++|+++|+++++||||+... +...++.+++..++
T Consensus         2 IKli~~DlDGTLl~------~~~~--~~~~~~~~~l~~l~~~gi~~~i~TGR~~~~-~~~~~~~l~~~~~~   63 (269)
T d1rlma_           2 VKVIVTDMDGTFLN------DAKT--YNQPRFMAQYQELKKRGIKFVVASGNQYYQ-LISFFPELKDEISF   63 (269)
T ss_dssp             CCEEEECCCCCCSC------TTSC--CCHHHHHHHHHHHHHHTCEEEEECSSCHHH-HGGGCTTTTTTSEE
T ss_pred             EEEEEEeCCccCcC------CCCc--CChHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCcccce
Confidence            69999999999997      3332  233679999999999999999999999877 67777777776543

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.09  E-value=1.4e-10  Score=80.67  Aligned_cols=94  Identities=19%  Similarity=0.179  Sum_probs=71.9

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEec----------ccCCCCCCHHHHHHHHH
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIY----------MYTKDSSNASSSESTCA  116 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~----------~~~~~kp~p~~~~~~~~  116 (156)
                      ..+++++.+.++.+..+|..++++|+..... +.......+...++......+          .....++.+.....+++
T Consensus        74 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (210)
T d1j97a_          74 ITPTEGAEETIKELKNRGYVVAVVSGGFDIA-VNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAK  152 (210)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHTCSEEEEEEEEEETTEEEEEEECSSCSTTHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHcCCEEEeeccccccc-ccchhhccchhhhhhhhhccccccccccccccccccccccchhhhHHH
Confidence            3688999999999999999999999998776 688888888877665533221          33445777889999999


Q ss_pred             HhCCCCcCceeEeeehhhhHHHhhcc
Q 031610          117 IFHFHPKRSCSIFMFQQVMIEMFQNR  142 (156)
Q Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~~  142 (156)
                      .+++.+.++.+++ -+.+++.|++..
T Consensus       153 ~~~~~~~~~i~iG-Ds~nDi~m~~~a  177 (210)
T d1j97a_         153 IEGINLEDTVAVG-DGANDISMFKKA  177 (210)
T ss_dssp             HHTCCGGGEEEEE-SSGGGHHHHHHC
T ss_pred             HhcccccceEEec-CCcChHHHHHHC
Confidence            9999999876544 455667777543

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=99.02  E-value=1.7e-10  Score=84.25  Aligned_cols=59  Identities=25%  Similarity=0.163  Sum_probs=48.8

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      |+|+++||+||||++      +.+   .+.|.+.++|++|++.| +++++|||+... +...++.++...
T Consensus         1 m~Kli~~DlDGTL~~------~~~---~i~~~~~~al~~l~~~~-~~~i~TGR~~~~-~~~~~~~~~~~~   59 (267)
T d1nf2a_           1 MYRVFVFDLDGTLLN------DNL---EISEKDRRNIEKLSRKC-YVVFASGRMLVS-TLNVEKKYFKRT   59 (267)
T ss_dssp             CBCEEEEECCCCCSC------TTS---CCCHHHHHHHHHHTTTS-EEEEECSSCHHH-HHHHHHHHSSSC
T ss_pred             CeEEEEEeCCccccC------CcC---ccCHHHHHHHHHHHcCC-EEEEECCCChHH-HHHHHHHhcccC
Confidence            789999999999997      444   57799999999998755 799999999877 688887766543

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.00  E-value=1.9e-10  Score=83.61  Aligned_cols=47  Identities=30%  Similarity=0.429  Sum_probs=40.6

Q ss_pred             ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~   77 (156)
                      |+||||+||||+++      ++  ..+.+.++++|++|+++|+++++||||+...
T Consensus         2 k~if~DlDGTL~~~------~~--~~i~~~~~~al~~l~~~gi~v~~~TGR~~~~   48 (260)
T d2rbka1           2 KALFFDIDGTLVSF------ET--HRIPSSTIEALEAAHAKGLKIFIATGRPKAI   48 (260)
T ss_dssp             CEEEECSBTTTBCT------TT--SSCCHHHHHHHHHHHHTTCEEEEECSSCGGG
T ss_pred             eEEEEECCCCCcCC------CC--CCCCHHHHHHHHHHHHCCCEEEEECCCCHHH
Confidence            78999999999972      22  1467889999999999999999999999765

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.95  E-value=4.1e-10  Score=81.65  Aligned_cols=46  Identities=22%  Similarity=0.250  Sum_probs=39.4

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~   77 (156)
                      +|+|+||+||||++.      .    .+.|++.++|++|+++|++++++||++...
T Consensus         2 yk~v~fDlDGTL~~~------~----~~i~~a~~~i~~l~~~g~~~~~~Tn~s~~~   47 (253)
T d1yv9a1           2 YQGYLIDLDGTIYLG------K----EPIPAGKRFVERLQEKDLPFLFVTNNTTKS   47 (253)
T ss_dssp             CCEEEECCBTTTEET------T----EECHHHHHHHHHHHHTTCCEEEEECCCSSC
T ss_pred             CCEEEEcCCCccEeC------C----CcCccHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            789999999999972      2    356899999999999999999999876444

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.9e-10  Score=80.67  Aligned_cols=54  Identities=24%  Similarity=0.260  Sum_probs=43.0

Q ss_pred             CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~   85 (156)
                      .+|+++|||||||++      ++.   ++.|.++++|++|+++|+ ++++|+|.... .......
T Consensus         2 ~~kl~~fDlDGTLl~------~~~---~i~~~~~~al~~l~~~g~-~~i~Tgr~~~~-~~~~~~~   55 (243)
T d2amya1           2 GPALCLFDVDGTLTA------PRQ---KITKEMDDFLQKLRQKIK-IGVVGGSDFEK-VQEQLGN   55 (243)
T ss_dssp             CSEEEEEESBTTTBC------TTS---CCCHHHHHHHHHHTTTSE-EEEECSSCHHH-HHHHHCT
T ss_pred             CCEEEEEcCcCCeeC------CCC---cCCHHHHHHHHHHHcCCC-EEEEcCCChHH-hHHHHhh
Confidence            578999999999997      343   578999999999999885 78999998665 3444433

>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus influenzae, HI1679 [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Probable phosphatase YrbI
domain: Probable phosphatase YrbI
species: Haemophilus influenzae, HI1679 [TaxId: 727]

Probab=98.91  E-value=2.4e-09  Score=74.23  Aligned_cols=109  Identities=17%  Similarity=0.111  Sum_probs=79.8

Q ss_pred             CCCceEEEecCCccccccccccccCCCcccCC-cHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEe
Q 031610           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYP-HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI   98 (156)
Q Consensus        20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~-~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~   98 (156)
                      +.+|+++||+||+|+|+...+..+++...-+. .--.+++.|++.|+.++++|++.... +......+++...+..    
T Consensus         3 ~~ik~~i~DvDGVlTDG~v~~~~dG~e~k~F~~~Dg~gi~~l~~~gi~~~iis~~~~~~-v~~~~~~l~~~~~~~~----   77 (177)
T d1k1ea_           3 ENIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPI-LRRRIADLGIKLFFLG----   77 (177)
T ss_dssp             GGCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHH-HHHHHHHHTCCEEEES----
T ss_pred             ccCeEEEEccCCcccCCeEEEeCCCCEEEEEECcchHHHHHHhhhcEEEEEecCCchhH-HHHHHhhhcccccccc----
Confidence            46899999999999997665555554333222 22238899999999999999999887 7888888887543321    


Q ss_pred             cccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610           99 YMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF  139 (156)
Q Consensus        99 ~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (156)
                           .+++...+..+++++++.++++.+++ -+.+.+.++
T Consensus        78 -----~~~K~~~l~~~~~~~~i~~~~v~~vG-Dd~nDl~~l  112 (177)
T d1k1ea_          78 -----KLEKETACFDLMKQAGVTAEQTAYIG-DDSVDLPAF  112 (177)
T ss_dssp             -----CSCHHHHHHHHHHHHTCCGGGEEEEE-CSGGGHHHH
T ss_pred             -----cccHHHHHHHHHHHhcCCcceeEEec-CCccHHHHH
Confidence                 35667788899999999999987655 344455554

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=7.7e-10  Score=78.19  Aligned_cols=45  Identities=27%  Similarity=0.388  Sum_probs=35.1

Q ss_pred             ceEE-EecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610           23 RLVV-FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (156)
Q Consensus        23 k~i~-fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~   77 (156)
                      |+|+ |||||||++      +++   .+.+.++++|++|+++|+ ++++|+|....
T Consensus         1 k~i~lFDlDGTLl~------~~~---~is~~~~~~i~~l~~~g~-~~i~tgrr~~~   46 (244)
T d2fuea1           1 RVLCLFDVDGTLTP------ARQ---KIDPEVAAFLQKLRSRVQ-IGVVGGSDYCK   46 (244)
T ss_dssp             CEEEEEESBTTTBS------TTS---CCCHHHHHHHHHHTTTSE-EEEECSSCHHH
T ss_pred             CEEEEEccccCccC------CCC---cCCHHHHHHHHHHHhCCC-EEEEecCChhh
Confidence            3455 799999998      444   577899999999999996 55677776555

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=98.78  E-value=2.5e-09  Score=77.53  Aligned_cols=45  Identities=16%  Similarity=0.242  Sum_probs=39.0

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCCh
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP   76 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~   76 (156)
                      +|+|+||+||||++.      .    .+.|++.++|+.|+++|++++++||++..
T Consensus         2 yk~vlFDlDGTL~~~------~----~~i~~a~e~l~~l~~~g~~~~~~TN~s~~   46 (253)
T d1wvia_           2 YKGYLIDLDGTIYKG------K----DRIPAGEDFVKRLQERQLPYILVTNNTTR   46 (253)
T ss_dssp             CCEEEEECBTTTEET------T----EECHHHHHHHHHHHHHTCCEEEEECCCSS
T ss_pred             cCEEEEcCcCceEEC------C----CcCccHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            689999999999972      2    46799999999999999999999986543

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.76  E-value=9.2e-09  Score=67.03  Aligned_cols=60  Identities=18%  Similarity=0.119  Sum_probs=45.9

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--HHHHHHHHcCC
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGI   88 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--~~~~~l~~l~l   88 (156)
                      .|++|+||||..+     .......+.|++++.|+.|+++|+++++.|+|+...  .....+++.++
T Consensus         2 ti~vDiDGTl~~~-----~~~~~~kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~~i   63 (122)
T d2obba1           2 TIAVDFDGTIVEH-----RYPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGL   63 (122)
T ss_dssp             EEEECCBTTTBCS-----CTTSCCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTC
T ss_pred             EEEEEcCCCcCCC-----CCCccccccHHHHHHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHcCC
Confidence            4899999999764     333445789999999999999999999999998543  12445555555

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein VC0232
domain: Hypothetical protein VC0232
species: Vibrio cholerae [TaxId: 666]

Probab=98.74  E-value=2.9e-08  Score=64.71  Aligned_cols=70  Identities=16%  Similarity=0.179  Sum_probs=50.7

Q ss_pred             ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCCh--------------hHHHHHHHHcCC
Q 031610           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP--------------DIAKTFLHKLGI   88 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~--------------~~~~~~l~~l~l   88 (156)
                      |.|+||+||||....-   ..-....|.+++++.|+.|+++|+++++.|+|...              ......|+..|+
T Consensus         2 K~i~~DiDGTI~~~~~---~~y~~~~P~~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~gI   78 (124)
T d1xpja_           2 KKLIVDLDGTLTQANT---SDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQV   78 (124)
T ss_dssp             CEEEECSTTTTBCCCC---SCGGGCCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTC
T ss_pred             CEEEEeCCCCeECCCC---CCcCccCcCHHHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHHHHHHHHHcCC
Confidence            5799999999976311   11123368899999999999999999999999521              124677888887


Q ss_pred             CCCCceEEE
Q 031610           89 HSMFVPMVV   97 (156)
Q Consensus        89 ~~~f~~~~~   97 (156)
                      .  ++.++.
T Consensus        79 ~--Yd~Li~   85 (124)
T d1xpja_          79 P--YDEILV   85 (124)
T ss_dssp             C--CSEEEE
T ss_pred             C--ceEEEE
Confidence            3  455543

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.66  E-value=1e-08  Score=71.99  Aligned_cols=49  Identities=22%  Similarity=0.356  Sum_probs=37.8

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~   77 (156)
                      +|+||+||||+++.    ...+...+.+.+.++|+.|+++ ..++|+|||+...
T Consensus         2 Li~~DlDGTL~~~~----~~~~~~~i~~~~~~~l~~l~~~-~~v~i~TGR~~~~   50 (229)
T d1u02a_           2 LIFLDYDGTLVPII----MNPEESYADAGLLSLISDLKER-FDTYIVTGRSPEE   50 (229)
T ss_dssp             EEEEECBTTTBCCC----SCGGGCCCCHHHHHHHHHHHHH-SEEEEECSSCHHH
T ss_pred             EEEEEecCCCCCCC----CChhhCCCCHHHHHHHHHHhhC-CCEEEEcCCCHHH
Confidence            69999999999731    1122335889999999999874 6799999999655

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.54  E-value=3.6e-08  Score=75.65  Aligned_cols=72  Identities=17%  Similarity=0.145  Sum_probs=59.9

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce--EEEec-----------ccCCCCCCHHHHHHH
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP--MVVIY-----------MYTKDSSNASSSEST  114 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~--~~~~~-----------~~~~~kp~p~~~~~~  114 (156)
                      +++|++.++|+.|+++|++++++||++... +...++.+|+..+|+.  +++.+           .....||+|..+..+
T Consensus       215 ~p~~~v~~~l~~lk~aGi~v~i~Tg~~~~~-a~~il~~lgl~~~F~~~~i~~~~d~~~~~~~~~~~~~~~KP~p~~~~~~  293 (380)
T d1qyia_         215 RPVDEVKVLLNDLKGAGFELGIATGRPYTE-TVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAA  293 (380)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHHH
T ss_pred             cchhhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCcccCCcceEEecchhhhhhhhccccccccCCChHHHHHH
Confidence            356799999999999999999999999988 8999999999999875  34333           235689999999998


Q ss_pred             HHHhCC
Q 031610          115 CAIFHF  120 (156)
Q Consensus       115 ~~~~~~  120 (156)
                      +...+.
T Consensus       294 ~~~~~~  299 (380)
T d1qyia_         294 LYGNNR  299 (380)
T ss_dssp             HHCCCG
T ss_pred             HHHcCC
Confidence            865543

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.54  E-value=1.9e-08  Score=71.86  Aligned_cols=57  Identities=16%  Similarity=0.086  Sum_probs=44.2

Q ss_pred             ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      .+++||+||||++.      ..     .+...+.+.+++++|+.++++|||+... +...++.+++...
T Consensus         4 ~li~~DlDGTL~~~------~~-----~~~~~~~~~~~~~~g~~v~i~TGR~~~~-~~~~~~~~~~~~~   60 (244)
T d1s2oa1           4 LLLISDLDNTWVGD------QQ-----ALEHLQEYLGDRRGNFYLAYATGRSYHS-ARELQKQVGLMEP   60 (244)
T ss_dssp             EEEEECTBTTTBSC------HH-----HHHHHHHHHHTTGGGEEEEEECSSCHHH-HHHHHHHHTCCCC
T ss_pred             eEEEEECcccCCCC------CC-----CHHHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHcCCCCC
Confidence            46778999999972      21     1234556777789999999999999888 7999999887643

>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Homoserine kinase ThrH
domain: Homoserine kinase ThrH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.38  E-value=2.3e-07  Score=63.75  Aligned_cols=92  Identities=11%  Similarity=0.052  Sum_probs=62.8

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEec----ccCCCCCCHHHHHHHHHHhCCCC
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIY----MYTKDSSNASSSESTCAIFHFHP  122 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~----~~~~~kp~p~~~~~~~~~~~~~~  122 (156)
                      ....++....+..++ .+.+.+++|+..... .......++....+.......    ......+.+......++.+++.+
T Consensus        68 ~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  145 (206)
T d1rkua_          68 LKPLEGAVEFVDWLR-ERFQVVILSDTFYEF-SQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLY  145 (206)
T ss_dssp             CCCCTTHHHHHHHHH-TTSEEEEEEEEEHHH-HHHHHHHTTCCCEEEEEEEECTTSCEEEEECCSSSHHHHHHHHHHHTT
T ss_pred             ccccchHHHHHHHhh-cCceEEEeccCchHH-HHHHHHHhCCchhhcceeeeecccccccccccchhhHHHHHHHhcccc
Confidence            357788888887764 678999999887666 677778888776554433221    11223445556778889999999


Q ss_pred             cCceeEeeehhhhHHHhhc
Q 031610          123 KRSCSIFMFQQVMIEMFQN  141 (156)
Q Consensus       123 ~~~~~v~~~~~~~~~~~~~  141 (156)
                      +++.+++ -+.+++.|++.
T Consensus       146 ~eviaiG-Dg~NDi~Ml~~  163 (206)
T d1rkua_         146 YRVIAAG-DSYNDTTMLSE  163 (206)
T ss_dssp             CEEEEEE-CSSTTHHHHHH
T ss_pred             cceEEec-CCccCHHHHHh
Confidence            9887655 56667777743

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.21  E-value=1e-05  Score=53.04  Aligned_cols=79  Identities=19%  Similarity=0.156  Sum_probs=61.7

Q ss_pred             CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEeccc
Q 031610           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMY  101 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~  101 (156)
                      ..+++||.+|+++-+        -..++.|++.++++.|++.|+++.++||..... +..+.+.+|++..|.        
T Consensus         3 ~~~~~~d~~~~~~~g--------~~D~lr~~a~~~I~~L~~~Gi~v~ilTGD~~~~-a~~ia~~lgI~~v~~--------   65 (135)
T d2b8ea1           3 VTAVIFDKTGTLTKG--------KPDTLKESAKPAVQELKRMGIKVGMITGDNWRS-AEAISRELNLDLVIA--------   65 (135)
T ss_dssp             CCEEEEECCCCCBCS--------CCCCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEEC--------
T ss_pred             EEEEEECCceEEEEe--------cCCCCCccHHHHHHHHHHcCCEEEEEcCcchhh-hhHHHhhhhhhhhcc--------
Confidence            468999999999752        122688999999999999999999999999888 799999999865432        


Q ss_pred             CCCCCCHHHHHHHHHHhCC
Q 031610          102 TKDSSNASSSESTCAIFHF  120 (156)
Q Consensus       102 ~~~kp~p~~~~~~~~~~~~  120 (156)
                         ...|+......+.++-
T Consensus        66 ---~~~p~~k~~~v~~~q~   81 (135)
T d2b8ea1          66 ---EVLPHQKSEEVKKLQA   81 (135)
T ss_dssp             ---SCCHHHHHHHHHHHTT
T ss_pred             ---ccchhHHHHHHHHHHc
Confidence               3345556666666543

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=4.6e-06  Score=58.57  Aligned_cols=68  Identities=18%  Similarity=0.125  Sum_probs=46.5

Q ss_pred             CceEEEecCCcccccccc--c------------------c-----ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCCh
Q 031610           22 PRLVVFDLDYTLWPFYCE--C------------------C-----YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP   76 (156)
Q Consensus        22 ~k~i~fDlDGTL~~~~~~--~------------------~-----~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~   76 (156)
                      +.+|+||+|.|+++....  .                  +     .......+.||+.++++.++++|++++.+|||...
T Consensus        35 P~AIifDIDETvLdnspy~~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~A~p~pga~~fl~~~~~~Gv~IfyVTnR~~~  114 (209)
T d2b82a1          35 PMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPT  114 (209)
T ss_dssp             CCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECSCCC
T ss_pred             CceEEEcchhhhhcCcHHHHhhhhhcCcCcccccCCCcchHHHhcccccccCcchhHHHHHHHHHHcCCeEEEEeCCchh
Confidence            459999999999984110  0                  0     01122346789999999999999999999999743


Q ss_pred             h--HHHHHH-HHcCCC
Q 031610           77 D--IAKTFL-HKLGIH   89 (156)
Q Consensus        77 ~--~~~~~l-~~l~l~   89 (156)
                      .  ...+-+ +.+|+.
T Consensus       115 ~~e~T~~nL~K~lG~p  130 (209)
T d2b82a1         115 KTETVSKTLADNFHIP  130 (209)
T ss_dssp             SSCCHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHcCCC
Confidence            2  123334 457774

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.4e-06  Score=58.80  Aligned_cols=77  Identities=21%  Similarity=0.099  Sum_probs=57.6

Q ss_pred             CCceEEEecCCcccccccccc--------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc
Q 031610           21 LPRLVVFDLDYTLWPFYCECC--------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (156)
Q Consensus        21 ~~k~i~fDlDGTL~~~~~~~~--------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l   86 (156)
                      ....+++|||+||+.+.....              ...-...+.||+.++|+.+.+. +.++|.|++.... +..+++.+
T Consensus        14 ~k~~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-yei~I~Ta~~~~Y-A~~il~~l   91 (181)
T d1ta0a_          14 DKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL-FECVLFTASLAKY-ADPVADLL   91 (181)
T ss_dssp             TSCEEEECCBTTTEEEESSCCTTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHHH-HHHHHHHH
T ss_pred             CCeEEEEeCCCCEEccccCCCCCccceeeecccceeeeeEEecCCCHHHHHHHHHhc-eEEEEEcCCcHHH-HHHHHHHh
Confidence            456899999999995321100              0011224699999999999776 9999999999998 89999999


Q ss_pred             CCCCCCceEEEec
Q 031610           87 GIHSMFVPMVVIY   99 (156)
Q Consensus        87 ~l~~~f~~~~~~~   99 (156)
                      .....|......+
T Consensus        92 dp~~~~~~~~~r~  104 (181)
T d1ta0a_          92 DKWGAFRARLFRE  104 (181)
T ss_dssp             CSSCCEEEEECGG
T ss_pred             ccCCceeEEEEee
Confidence            8877776655443

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=4e-06  Score=61.88  Aligned_cols=44  Identities=16%  Similarity=0.186  Sum_probs=39.9

Q ss_pred             cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (156)
Q Consensus        47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~   91 (156)
                      ..+.||+.++++.|++.|++++|+|++-... ++.+++.+++...
T Consensus       134 i~Lr~G~~e~~~~l~~~~i~~~IvSgG~~~~-ie~vl~~lg~~~~  177 (291)
T d2bdua1         134 VMLKEGYENFFGKLQQHGIPVFIFSAGIGDV-LEEVIRQAGVYHS  177 (291)
T ss_dssp             CCBCBTHHHHHHHHHHHTCCEEEEEEEEHHH-HHHHHHHTTCCBT
T ss_pred             CCcccCHHHHHHHHHHcCCeEEEEcCChHHH-HHHHHHHcCCCcc
Confidence            4689999999999999999999999999777 7999999998654

>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Calcium ATPase, catalytic domain P
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.84  E-value=2.6e-05  Score=52.90  Aligned_cols=59  Identities=17%  Similarity=0.193  Sum_probs=50.8

Q ss_pred             ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (156)
Q Consensus        23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~   90 (156)
                      .++++|.+|||+-..        ..++.|++.++|+.|++.|+++.++||-.... +..+.+.+|+..
T Consensus         3 ~~~~~d~~~~~~~~~--------~Dp~R~~~~~~I~~l~~~GI~v~miTGD~~~t-A~~ia~~~Gi~~   61 (168)
T d1wpga2           3 SVICSDKTGTLTTNQ--------LDPPRKEVMGSIQLCRDAGIRVIMITGDNKGT-AIAICRRIGIFG   61 (168)
T ss_dssp             CEEEECCTTTTBCCC--------ECCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTSSC
T ss_pred             EEEEECCccEEEEEe--------cCCCchhHHHHHHHHHHCcCEEEEECCCCHHH-HHHHHHHcCCCC
Confidence            368899999998521        23788999999999999999999999999888 899999999854

>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5'(3')-deoxyribonucleotidase (dNT-2)
domain: 5'(3')-deoxyribonucleotidase (dNT-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=8.3e-05  Score=50.98  Aligned_cols=30  Identities=10%  Similarity=0.014  Sum_probs=24.6

Q ss_pred             CcccCCcHHHHHHHHHHCC-CeEEEEcCCCC
Q 031610           46 IPYLYPHAKGILEALKEKG-IHVAVASRSPA   75 (156)
Q Consensus        46 ~~~l~~~~~~~L~~L~~~G-~~v~i~T~~~~   75 (156)
                      ..+++||+.++++.|++.| +.+.++|+++.
T Consensus        72 ~L~p~~gA~e~l~~L~~~~~~~v~i~t~~~~  102 (195)
T d1q92a_          72 ELEPLPGAVEAVKEMASLQNTDVFICTSPIK  102 (195)
T ss_dssp             TCCBCTTHHHHHHHHHHSTTEEEEEEECCCS
T ss_pred             hCCcccCHHHHHHHHhhccCccceEEccccc
Confidence            3468899999999999865 57888998764

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=95.16  E-value=0.00068  Score=47.94  Aligned_cols=27  Identities=4%  Similarity=-0.085  Sum_probs=23.8

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610          103 KDSSNASSSESTCAIFHFHPKRSCSIF  129 (156)
Q Consensus       103 ~~kp~p~~~~~~~~~~~~~~~~~~~v~  129 (156)
                      ..||+|.+++.++++++++|+++.+|+
T Consensus       178 ~gKP~p~~~~~al~~l~i~~~~~~mIG  204 (253)
T d1wvia_         178 IGKPEAVIMNKALDRLGVKRHEAIMVG  204 (253)
T ss_dssp             CSTTSHHHHHHHHHHHTSCGGGEEEEE
T ss_pred             eccCCcccceehhhhccccccceEEEc
Confidence            359999999999999999999877655

>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5' nucleotidase-like
domain: Cytosolic IMP-GMP specific 5'-nucleotidase
species: Legionella pneumophila [TaxId: 446]

Probab=94.18  E-value=0.014  Score=44.87  Aligned_cols=50  Identities=14%  Similarity=0.121  Sum_probs=40.8

Q ss_pred             ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH-c--------CCCCCCceEEEe
Q 031610           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-L--------GIHSMFVPMVVI   98 (156)
Q Consensus        48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~-l--------~l~~~f~~~~~~   98 (156)
                      ..-|.+..+|++|+++|.+++++||+.... +...+.. +        .+..+|+.+++.
T Consensus       185 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~y-~~~~m~y~~~~~~~~g~dWr~lFDvVIv~  243 (458)
T d2bdea1         185 IREKEVVEGLKHFIRYGKKIFILTNSEYSY-SKLLLDYALSPFLDKGEHWQGLFEFVITL  243 (458)
T ss_dssp             ECCHHHHHHHHHHHTTTCEEEEECSSCHHH-HHHHHHHHHGGGSCTTCCGGGTEEEEEES
T ss_pred             cCChhHHHHHHHHHHcCCeEEEEecCcHHH-HHHHhhhhcccCCCCCCChHHhceEEEeC
Confidence            346788899999999999999999999888 6777664 3        566689988763

>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Thermotoga maritima [TaxId: 2336]

Probab=90.75  E-value=0.47  Score=28.20  Aligned_cols=73  Identities=16%  Similarity=0.169  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhccCCCCCceEEEecCCc-cccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH
Q 031610            5 EKVKNEALEIIGQFENLPRLVVFDLDYT-LWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (156)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~k~i~fDlDGT-L~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l   83 (156)
                      +++.......+.  ....+.|++|+.++ .+|      +.     -..-..++.+.++++|.++.++.  ..+. +...+
T Consensus        29 ~~~~~~l~~~~~--~~~~~~vvid~~~v~~iD------ss-----g~~~l~~~~~~~~~~~~~l~l~~--~~~~-v~~~l   92 (110)
T d1vc1a_          29 SELKEQLRNFIS--TTSKKKIVLDLSSVSYMD------SA-----GLGTLVVILKDAKINGKEFILSS--LKES-ISRIL   92 (110)
T ss_dssp             HHHHHHHHHHHH--HCCCSEEEEEEEECCCBC------HH-----HHHHHHHHHHHHHHTTCEEEEES--CCHH-HHHHH
T ss_pred             HHHHHHHHHHHh--cCCCCEEEEEEECCCccC------HH-----HHHHHHHHHHHHHhCCCEEEEEe--CCHH-HHHHH
Confidence            444433333333  23347799999885 445      22     22334557788889999988764  3355 69999


Q ss_pred             HHcCCCCCCc
Q 031610           84 HKLGIHSMFV   93 (156)
Q Consensus        84 ~~l~l~~~f~   93 (156)
                      +..|+...+.
T Consensus        93 ~~~gl~~~~~  102 (110)
T d1vc1a_          93 KLTHLDKIFK  102 (110)
T ss_dssp             HHHTGGGTSE
T ss_pred             HHcCCCceee
Confidence            9999987764

>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus sphaericus [TaxId: 1421]

Probab=90.50  E-value=0.25  Score=29.72  Aligned_cols=73  Identities=10%  Similarity=0.147  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHhccCCCCCceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHH
Q 031610            4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF   82 (156)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~   82 (156)
                      +++++......+..  ..++.+++|+.++=. |      +     .-......+.+.++++|.++.++.-  .+. +.+.
T Consensus        25 a~~~~~~~~~~i~~--~~~~~vvlD~s~v~~iD------s-----sgl~~L~~~~~~~~~~g~~l~l~~~--~~~-v~~~   88 (111)
T d1h4xa_          25 VEQIRAKISTAIFQ--GAVTTIIWNFERLSFMD------S-----SGVGLVLGRMRELEAVAGRTILLNP--SPT-MRKV   88 (111)
T ss_dssp             HHHHHHHHHHHHHH--TSCSEEEEEEEEEEEEC------T-----HHHHHHHHHHHHHHTTTCEEEEESC--CHH-HHHH
T ss_pred             HHHHHHHHHHHHhc--CCCcEEEEEEECCcccC------c-----hHHHHHHHHHHHHHHCCCEEEEecC--CHH-HHHH
Confidence            34555444443333  346789999988733 3      1     1223355677889999999987754  344 6999


Q ss_pred             HHHcCCCCCC
Q 031610           83 LHKLGIHSMF   92 (156)
Q Consensus        83 l~~l~l~~~f   92 (156)
                      ++..|+..++
T Consensus        89 l~~~gl~~~~   98 (111)
T d1h4xa_          89 FQFSGLGPWM   98 (111)
T ss_dssp             HHHTTCGGGE
T ss_pred             HHHcCCCeEE
Confidence            9999988766

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.91  E-value=0.15  Score=35.08  Aligned_cols=40  Identities=10%  Similarity=-0.143  Sum_probs=29.3

Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhh
Q 031610          101 YTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQ  140 (156)
Q Consensus       101 ~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  140 (156)
                      ....||+|.++..+++.+|+.|+++++|+=--.+++.+..
T Consensus       176 ~~~~KP~~~~~~~~~~~~gi~~~~~l~IGD~~~~DI~~a~  215 (253)
T d1yv9a1         176 VYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGI  215 (253)
T ss_dssp             EECSTTSHHHHHHHHHHHCSCGGGEEEEESCTTTHHHHHH
T ss_pred             eeecccchhHHHHHHHHhCCCccceEEecCChHHHHHHHH
Confidence            3457999999999999999999998766522122455543

>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.44  E-value=0.44  Score=28.54  Aligned_cols=73  Identities=15%  Similarity=0.261  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhccCCCCCceEEEecCCcc-ccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH
Q 031610            5 EKVKNEALEIIGQFENLPRLVVFDLDYTL-WPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (156)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~k~i~fDlDGTL-~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l   83 (156)
                      ..+.....+.+.  .+..+.|++|+-++- +|      +.     -..-..++.+.++++|.++.++.  ..+. +.+.+
T Consensus        27 ~~~~~~l~~~~~--~~~~~~iilDls~v~~iD------ss-----g~~~L~~~~~~~~~~g~~l~l~~--~~~~-v~~~l   90 (115)
T d1th8b_          27 EELREQVTDVLE--NRAIRHIVLNLGQLTFMD------SS-----GLGVILGRYKQIKNVGGQMVVCA--VSPA-VKRLF   90 (115)
T ss_dssp             HHHHHHHHHHHH--SSCCCEEEEEEEEEEEEC------HH-----HHHHHHHHHHHHHHTTCCEEEES--CCHH-HHHHH
T ss_pred             HHHHHHHHHHHh--cCCCCEEEEEEECCCCCC------HH-----HHHHHHHHHHHHHhCCCEEEEEE--CCHH-HHHHH
Confidence            444444333333  234678999998853 33      11     22335567788889999988774  3455 68999


Q ss_pred             HHcCCCCCCc
Q 031610           84 HKLGIHSMFV   93 (156)
Q Consensus        84 ~~l~l~~~f~   93 (156)
                      +..|+...|.
T Consensus        91 ~~~gl~~~~~  100 (115)
T d1th8b_          91 DMSGLFKIIR  100 (115)
T ss_dssp             HHHTGGGTSE
T ss_pred             HHcCCCceeE
Confidence            9999988774

>d1jx7a_ c.114.1.1 (A:) Hypothetical protein YchN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: DsrEFH-like
superfamily: DsrEFH-like
family: DsrEF-like
domain: Hypothetical protein YchN
species: Escherichia coli [TaxId: 562]

Probab=87.02  E-value=0.83  Score=27.58  Aligned_cols=42  Identities=14%  Similarity=0.097  Sum_probs=31.6

Q ss_pred             eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEc
Q 031610           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS   71 (156)
Q Consensus        24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T   71 (156)
                      .|||.-||+.+-.      .+....-.+...+.++.|.+.|.++.+|.
T Consensus        38 ~vff~~dgV~~~~------~~~~~~~~~~~~~~l~~l~~~gv~v~vC~   79 (117)
T d1jx7a_          38 RLFLMSDAVTAGL------RGQKPGEGYNIQQMLEILTAQNVPVKLCK   79 (117)
T ss_dssp             EEEECGGGGGGGB------SCCCCSSSCCHHHHHHHHHHTTCCEEEEH
T ss_pred             EEEEecchHHHhh------ccCCccccccHHHHHHHHHHCCCEEEEEH
Confidence            6999999998741      12122234678899999999999999884

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.12  E-value=2.3  Score=25.93  Aligned_cols=71  Identities=4%  Similarity=0.026  Sum_probs=43.3

Q ss_pred             CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHH---CCCeEEEEcCCCChhHHHHHHHHcCCCCCCceE
Q 031610           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE---KGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (156)
Q Consensus        19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~---~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~   95 (156)
                      .+.+.+|+.|+.=-=.                 .-.++++++++   ...+++++|+..... ......+.|.++|+   
T Consensus        49 ~~~~dlillD~~mP~~-----------------dG~el~~~ir~~~~~~~piI~lT~~~~~~-~~~~~~~~G~~~~l---  107 (128)
T d2r25b1          49 GENYNMIFMDVQMPKV-----------------DGLLSTKMIRRDLGYTSPIVALTAFADDS-NIKECLESGMNGFL---  107 (128)
T ss_dssp             TCCCSEEEECSCCSSS-----------------CHHHHHHHHHHHSCCCSCEEEEESCCSHH-HHHHHHHTTCSEEE---
T ss_pred             cCCCCEEEEEeCCCCC-----------------CHHHHHHHHHHccCCCCeEEEEECCCCHH-HHHHHHHcCCCEEE---
Confidence            4566778887732211                 13456666653   347788999888766 35555577766554   


Q ss_pred             EEecccCCCCC-CHHHHHHHHHHh
Q 031610           96 VVIYMYTKDSS-NASSSESTCAIF  118 (156)
Q Consensus        96 ~~~~~~~~~kp-~p~~~~~~~~~~  118 (156)
                              .|| ++..+..+++++
T Consensus       108 --------~KP~~~~~L~~~l~~~  123 (128)
T d2r25b1         108 --------SKPIKRPKLKTILTEF  123 (128)
T ss_dssp             --------ESSCCHHHHHHHHHHH
T ss_pred             --------ECCCCHHHHHHHHHHH
Confidence                    376 566666666653

>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.75  E-value=4.7  Score=28.28  Aligned_cols=76  Identities=24%  Similarity=0.270  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH
Q 031610            4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (156)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l   83 (156)
                      .+++.++|+.-+.....  |.+++=+.|-++..       .   .+.+...+-|..|++.|++++|+.|..+ . +...+
T Consensus        10 ~~~~l~~a~PYi~~~r~--ktiVIKlGG~~l~~-------~---~~~~~~~~dIa~L~~~G~~vViVhGgg~-~-i~~~l   75 (300)
T d2bufa1          10 VAKVLSEALPYIRRFVG--KTLVIKYGGNAMES-------E---ELKAGFARDVVLMKAVGINPVVVHGGGP-Q-IGDLL   75 (300)
T ss_dssp             HHHHHHHHHHHHHHHTT--CEEEEEECCTTTTS-------S---HHHHHHHHHHHHHHHTTCEEEEEECCCH-H-HHHHH
T ss_pred             HHHHHHHHHHHHHHHCC--CEEEEEEChHHhCC-------h---hHHHHHHHHHHHHHHcCCcEEEecChHH-H-HHHHH
Confidence            35677788887777776  77999999987751       1   2445667778899999999999998884 4 58888


Q ss_pred             HHcCCCCCCc
Q 031610           84 HKLGIHSMFV   93 (156)
Q Consensus        84 ~~l~l~~~f~   93 (156)
                      +.+++...|.
T Consensus        76 ~~~gi~~~~~   85 (300)
T d2bufa1          76 KRLSIESHFI   85 (300)
T ss_dssp             HHTTCCCCBS
T ss_pred             HhcccCceec
Confidence            9999877653

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.78  E-value=0.3  Score=36.07  Aligned_cols=14  Identities=21%  Similarity=0.418  Sum_probs=12.5

Q ss_pred             ceEEEecCCccccc
Q 031610           23 RLVVFDLDYTLWPF   36 (156)
Q Consensus        23 k~i~fDlDGTL~~~   36 (156)
                      |.|+||+||+|++.
T Consensus         2 ~~i~fd~dGVll~~   15 (380)
T d1qyia_           2 KKILFDVDGVFLSE   15 (380)
T ss_dssp             CEEEECSBTTTBCS
T ss_pred             ceEEEeCCcEEEcc
Confidence            67999999999984