Citrus Sinensis ID: 031651

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNNRD
Secondary Structure (PSIPRED)
cccEEEEEEEEcccHHHHHHHHccccccHHHHHHcccEEEEEEEEccccccEEEEEEEEcccccccEEEEEEEEEEccccEEEEEEEEcccccccEEEEEEEEEEEEEccccEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcccHHHHHHHHccccHHHHHHHHHcHHcEEEEEEccccccEEEEEEccccccccccEEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEEEEcccccEEEEEEEEEEEcccHccccccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mkgqlshelevnvpagqaweLYGTIKLVKLVEKEYDTVEEIEvvegdggvgtilhikfkpgtpgfagykEKFIeidnkkrvrvtdvveggyldvGFTLFRVIFEIIEkgsdsciiKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNNRD
Flexible Loop (DISEMBL)
MKGQLSHELEvnvpagqawelYGTIKLVKLVEKEYDTVEEIevvegdggvgTILHIKfkpgtpgfaGYKEKFieidnkkrvrvtdvveggyldvgfTLFRVIFEIiekgsdsciIKSTIEYELREEAAANASFVSIDTVAKIAeisknyllnnrd
Low Complexity Region (SEG)
MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYdtveeievvegdggvgtiLHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNNRD
Disordered region (IsUnstruct)
**********VNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL****
Disordered Region (DISOPRED)
**GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE**********DTVAKIAEISKNYLLNN**
Disordered Region (DISEMBL)
MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNNRD
Disordered Region (DISPRO)
***QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNNRD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q67A25	210	S-norcoclaurine synthase	N/A	no	0.767	0.566	0.427	2e-19
A2A1A1	196	S-norcoclaurine synthase	N/A	no	0.954	0.755	0.341	5e-15
Q05736	158	Pathogenesis-related prot	N/A	no	0.916	0.898	0.308	4e-06

>sp|Q67A25|NCS_THLFG S-norcoclaurine synthase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 75/124 (60%), Gaps = 5/124 (4%)

Query: 5   LSHELEVNVPAGQAWELYGTIKLVK-LVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTP 63
           + HELEV   A   W +Y    L K L +      E++E++ GDGGVGTIL + F PG  
Sbjct: 46  IHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDGGVGTILDMTFVPGE- 103

Query: 64  GFAG-YKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYE 122
            F   YKEKFI +DN+ R++   ++EGGYLD+G T +     ++  G DSC+IKS+ EY 
Sbjct: 104 -FPHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYH 162

Query: 123 LREE 126
           ++ E
Sbjct: 163 VKPE 166

Involved in the biosynthesis of the common precursor of all benzylisoquinoline alkaloids such as morphine, sanguinarine, codeine or berberine. Condenses dopamine and 4-hydroxyphenylacetaldehyde.
Thalictrum flavum subsp. glaucum (taxid: 150095)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 7EC: 8

>sp|A2A1A1|NCS2_COPJA S-norcoclaurine synthase 2 OS=Coptis japonica GN=PR10A PE=2 SV=2

 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 7/155 (4%)

Query: 4   QLSHELEVNVPAGQAWELYGTIKL-VKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGT 62
            L HELEV   A + W + G+ +L + L +     +     + GDGG G+IL + F PG 
Sbjct: 40  MLYHELEVAASADEVWSVEGSPELGLHLPDLLPAGIFAKFEITGDGGEGSILDMTFPPGQ 99

Query: 63  -PGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEY 121
            P    Y+EKF+  D+K R ++ + ++G + D+G T +     ++  G DSC+IKST EY
Sbjct: 100 FP--HHYREKFVFFDHKNRYKLVEQIDGDFFDLGVTYYMDTIRVVATGPDSCVIKSTTEY 157

Query: 122 ELREEAAANASFVSIDTV--AKIAEISKNYLLNNR 154
            ++ E A     + IDTV  A ++E     +L N+
Sbjct: 158 HVKPEFAKIVKPL-IDTVPLAIMSEAIAKVVLENK 191

Involved in the biosynthesis of the common precursor of all benzylisoquinoline alkaloids such as morphine, sanguinarine, codeine or berberine. Condenses dopamine and pyruvic acid or 4-hydroxyphenylpyruvate.

Coptis japonica (taxid: 3442)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|Q05736|PR1_ASPOF Pathogenesis-related protein 1 OS=Asparagus officinalis GN=PR1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 17/159 (10%)

Query: 3   GQLSHELEVNVPAGQA-------WELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILH 55
           G  SHE+ VNV AG+        W   G     K+V    D +    VV GDG VGTI  
Sbjct: 4   GSWSHEVAVNVAAGRMFKAAMLDWHNLGP----KIVP---DFIAGGSVVSGDGSVGTIRE 56

Query: 56  IKF-KPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCI 114
           IK   P  P F+  KE+   +D+ K      +VEGG L   F      F+     +  C+
Sbjct: 57  IKINNPAIP-FSYVKERLDFVDHDKFEVKQTLVEGGGLGKMFECATTHFKFEPSSNGGCL 115

Query: 115 IKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN 153
           +K T  Y++     A+ S  + + +    + ++ YLL N
Sbjct: 116 VKVTASYKIL-PGVADESAKAKEGITNHMKATEAYLLAN 153

Asparagus officinalis (taxid: 4686)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
351727799	161	uncharacterized protein LOC100305838 [Gl	0.993	0.956	0.606	1e-48
388519899	162	unknown [Lotus japonicus]	0.993	0.950	0.567	3e-46
388508302	162	unknown [Lotus japonicus]	0.993	0.950	0.561	1e-45
225454743	164	PREDICTED: S-norcoclaurine synthase [Vit	0.993	0.939	0.522	4e-40
449460704	157	PREDICTED: S-norcoclaurine synthase-like	0.993	0.980	0.506	8e-40
449460710	156	PREDICTED: S-norcoclaurine synthase-like	0.974	0.967	0.470	6e-37
449484076	164	PREDICTED: S-norcoclaurine synthase-like	0.980	0.926	0.477	1e-36
449460756	501	PREDICTED: uncharacterized protein LOC10	0.980	0.303	0.477	2e-36
326513769	165	predicted protein [Hordeum vulgare subsp	0.993	0.933	0.477	2e-32
115460240	161	Os04g0593400 [Oryza sativa Japonica Grou	0.967	0.931	0.437	3e-30

>gi|351727799|ref|NP_001237429.1| uncharacterized protein LOC100305838 [Glycine max] gi|255626741|gb|ACU13715.1| unknown [Glycine max]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/155 (60%), Positives = 126/155 (81%), Gaps = 1/155 (0%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DTVEEIEVVEGDGGVGTILHIKFK 59
           M GQL HELE++VPA +AW+L+G +++ KLV +E  +  +++E+ EGDGGVGT+L + F 
Sbjct: 1   MFGQLEHELELHVPASEAWDLFGALEIGKLVAQELPELFQKVELTEGDGGVGTVLKLTFA 60

Query: 60  PGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI 119
           PG PG AGYKEKF +IDN+KR++ T+VVEGGYL++GFTLFRV  E+IEKG +S IIKST+
Sbjct: 61  PGVPGPAGYKEKFTKIDNEKRIKETEVVEGGYLELGFTLFRVRLEVIEKGEESSIIKSTV 120

Query: 120 EYELREEAAANASFVSIDTVAKIAEISKNYLLNNR 154
           EYE++EE AANAS V+I  VA IAE++KNYL  N+
Sbjct: 121 EYEVKEENAANASLVTIQPVATIAELAKNYLNKNK 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519899|gb|AFK48011.1| unknown [Lotus japonicus]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/155 (56%), Positives = 122/155 (78%), Gaps = 1/155 (0%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DTVEEIEVVEGDGGVGTILHIKFK 59
           M G+L HELE++VPA + W+L+GT+++ + VE+E  +  +++E++EGDGGVGT+L + F 
Sbjct: 1   MFGKLEHELEMHVPASEVWDLFGTLRIGQFVEQEMTELFQKVELIEGDGGVGTVLKLTFA 60

Query: 60  PGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI 119
           PG PG   YKEKF +IDN+KR++  +VVEGGYL+ GFTL+RV F +IEKG DS  +KSTI
Sbjct: 61  PGIPGPTSYKEKFTKIDNEKRIKEVEVVEGGYLEHGFTLYRVTFHVIEKGEDSSALKSTI 120

Query: 120 EYELREEAAANASFVSIDTVAKIAEISKNYLLNNR 154
           EYE+REE AANAS VSI+ VA IA+++KNY   N+
Sbjct: 121 EYEVREEDAANASLVSIEPVANIAQLAKNYFSRNK 155

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508302|gb|AFK42217.1| unknown [Lotus japonicus]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/155 (56%), Positives = 122/155 (78%), Gaps = 1/155 (0%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DTVEEIEVVEGDGGVGTILHIKFK 59
           M G+L HELE++VPA + W+L+GT+++ + VE+E  +  +++E++EGDGGVGT+L + F 
Sbjct: 1   MFGKLEHELEMHVPASEVWDLFGTLRIGQFVEQEMTELFQKVELIEGDGGVGTVLKLTFA 60

Query: 60  PGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI 119
           PG PG   YKEKF +IDN+KR++  +VVEGGYL+ GFTL+RV F +IEKG DS  +KSTI
Sbjct: 61  PGIPGPTSYKEKFTKIDNEKRIKEVEVVEGGYLEHGFTLYRVTFHVIEKGEDSSALKSTI 120

Query: 120 EYELREEAAANASFVSIDTVAKIAEISKNYLLNNR 154
           EYE++EE AANAS VSI+ VA IA+++KNY   N+
Sbjct: 121 EYEVKEEDAANASLVSIEPVANIAQLAKNYFSRNK 155

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454743|ref|XP_002273566.1| PREDICTED: S-norcoclaurine synthase [Vitis vinifera] gi|297737294|emb|CBI26495.3| unnamed protein product [Vitis vinifera]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 83/159 (52%), Positives = 120/159 (75%), Gaps = 5/159 (3%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTV-EEIEVVEGDGGVGTILHIKFK 59
           M GQ+S+++EV+VPAG AWELY T++L K+V++    + E++E+VEGDGGVGT++ +   
Sbjct: 1   MFGQVSYDVEVDVPAGDAWELYSTLQLAKVVQEGLSPMLEKVELVEGDGGVGTVVELTLA 60

Query: 60  PGTPGFAG---YKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIK 116
           P  PG  G   YKEKF +IDN+KR++ T+VVEGG+LD+GFTL+RV  EI+EK  DSC+IK
Sbjct: 61  P-PPGAQGPMIYKEKFTKIDNEKRIKETEVVEGGFLDLGFTLYRVCIEIVEKDKDSCVIK 119

Query: 117 STIEYELREEAAANASFVSIDTVAKIAEISKNYLLNNRD 155
             IEY+++EEAA+NAS V+   +  IA ++  YLL  ++
Sbjct: 120 LKIEYDVKEEAASNASMVTTKPLEGIASVTTTYLLKMKN 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460704|ref|XP_004148085.1| PREDICTED: S-norcoclaurine synthase-like [Cucumis sativus] gi|449529541|ref|XP_004171758.1| PREDICTED: S-norcoclaurine synthase-like [Cucumis sativus]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 79/156 (50%), Positives = 122/156 (78%), Gaps = 2/156 (1%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLV-EKEYDTVEEIEVVEGDGGVGTILHIKFK 59
           M G+L HE  ++VPA   W+L+G+++L ++V E+  +  E+IE+VEGDGG GT+L++ F 
Sbjct: 1   MLGKLQHEAVIDVPANVTWQLFGSLELGRIVGEQLPNLFEKIELVEGDGGEGTVLNLIFA 60

Query: 60  PGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI 119
           PG  G + YKEKF +IDN+ R++ T++VEGG+L++GFTL+RV F+IIE G D CI+++TI
Sbjct: 61  PGL-GTSSYKEKFTKIDNENRIKETEIVEGGFLNIGFTLYRVRFKIIENGEDKCIVETTI 119

Query: 120 EYELREEAAANASFVSIDTVAKIAEISKNYLLNNRD 155
           EYE+ EEAAANAS V++  + +I +++ NYLL+N++
Sbjct: 120 EYEIMEEAAANASLVTLQPLIEIVQLANNYLLHNKN 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460710|ref|XP_004148088.1| PREDICTED: S-norcoclaurine synthase-like isoform 1 [Cucumis sativus] gi|449460712|ref|XP_004148089.1| PREDICTED: S-norcoclaurine synthase-like isoform 2 [Cucumis sativus] gi|449483972|ref|XP_004156747.1| PREDICTED: S-norcoclaurine synthase-like isoform 1 [Cucumis sativus] gi|449483976|ref|XP_004156748.1| PREDICTED: S-norcoclaurine synthase-like isoform 2 [Cucumis sativus]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 113/153 (73%), Gaps = 2/153 (1%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DTVEEIEVVEGDGGVGTILHIKFK 59
           M  +L  E E+  PA + WELYGT++    + +   + V++IE +EG+GG GT+L++ F 
Sbjct: 1   MVSELIDETEIQAPAAKVWELYGTVEFGNFLLRHVPNVVQKIEFLEGNGGEGTLLYVTFA 60

Query: 60  PGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI 119
           PG  G   YKE+F ++DN+ R+++ ++VEGGYLD+GFTL+R  FEIIEK  +SCI+KS+I
Sbjct: 61  PGLGGMR-YKERFAKVDNENRIKIAEMVEGGYLDLGFTLYRFRFEIIEKNEESCIVKSSI 119

Query: 120 EYELREEAAANASFVSIDTVAKIAEISKNYLLN 152
           +YEL+EEAA+NAS  +++ + ++A+ +K+Y LN
Sbjct: 120 QYELKEEAASNASLATVEPLKEVAQAAKHYFLN 152

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484076|ref|XP_004156777.1| PREDICTED: S-norcoclaurine synthase-like [Cucumis sativus]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 108/153 (70%), Gaps = 1/153 (0%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DTVEEIEVVEGDGGVGTILHIKFK 59
           M  ++S+E E+  PA + W+LYG +++V  +     + V +I+V++GDGG GT+LHI F 
Sbjct: 1   MVREISNESEIQAPAAKVWDLYGGLEMVNFIPVHLPNLVHKIDVLQGDGGEGTLLHITFA 60

Query: 60  PGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI 119
            G  G   YKEKF++IDN+ R+++ + VEGGYLD+GFTL++   EIIEK  +SCI+KST+
Sbjct: 61  HGLGGPTSYKEKFVKIDNENRIKIAETVEGGYLDLGFTLYKFRVEIIEKNEESCIVKSTV 120

Query: 120 EYELREEAAANASFVSIDTVAKIAEISKNYLLN 152
           EYEL++EAA+N S  S+  +  IA+   NY LN
Sbjct: 121 EYELKKEAASNISLASVQPLVAIAQAVNNYFLN 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460756|ref|XP_004148111.1| PREDICTED: uncharacterized protein LOC101204313 [Cucumis sativus]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 108/153 (70%), Gaps = 1/153 (0%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DTVEEIEVVEGDGGVGTILHIKFK 59
           M  ++S+E E+  PA + W+LYG +++V  +     + V +I+V++GDGG GT+LHI F 
Sbjct: 338 MVREISNESEIQAPAAKVWDLYGGLEMVNFIPVHLPNLVHKIDVLQGDGGEGTLLHITFA 397

Query: 60  PGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI 119
            G  G   YKEKF++IDN+ R+++ + VEGGYLD+GFTL++   EIIEK  +SCI+KST+
Sbjct: 398 HGLGGPTSYKEKFVKIDNENRIKIAETVEGGYLDLGFTLYKFRVEIIEKNEESCIVKSTV 457

Query: 120 EYELREEAAANASFVSIDTVAKIAEISKNYLLN 152
           EYEL++EAA+N S  S+  +  IA+   NY LN
Sbjct: 458 EYELKKEAASNISLASVQPLVAIAQAVNNYFLN 490

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326513769|dbj|BAJ87903.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 104/155 (67%), Gaps = 1/155 (0%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLV-EKEYDTVEEIEVVEGDGGVGTILHIKFK 59
           MKG L H+ E  +PA + WE+YG +++ +LV E   D ++++E+V+GDGGVGT+LH+ + 
Sbjct: 1   MKGSLCHDFETGLPAAEVWEIYGGLRIGQLVPELLPDMLKKVELVDGDGGVGTVLHLTYS 60

Query: 60  PGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI 119
           PG PGF   KEKFI+IDN+  V+   VVEGG LD GF    V FEII +  ++  I+STI
Sbjct: 61  PGIPGFEYQKEKFIKIDNENYVKEALVVEGGVLDHGFQKCLVRFEIIGQTDETSTIRSTI 120

Query: 120 EYELREEAAANASFVSIDTVAKIAEISKNYLLNNR 154
           EYE+ ++   NASFVS   VA IAE    Y+ + +
Sbjct: 121 EYEIDDDKTDNASFVSTSGVAHIAEAITKYIKSQK 155

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115460240|ref|NP_001053720.1| Os04g0593400 [Oryza sativa Japonica Group] gi|58532012|emb|CAE05469.3| OSJNBa0006A01.5 [Oryza sativa Japonica Group] gi|58532136|emb|CAE04138.3| OSJNBa0009P12.25 [Oryza sativa Japonica Group] gi|113565291|dbj|BAF15634.1| Os04g0593400 [Oryza sativa Japonica Group]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTV-EEIEVVEGDGGVGTILHIKFK 59
           M+G  SHELE +VPA + W++YGT++  +L+ +    +  ++E+V GDGGVGTI+ + F 
Sbjct: 1   MRGSQSHELETDVPASELWKIYGTLRAAELLPELLPHILAKVELVTGDGGVGTIVRLTFP 60

Query: 60  PGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI 119
           PG PG   YKEKFI++DNK  V+  + VEG  L +GF  + + FEII KG+++ +I+STI
Sbjct: 61  PGIPGLQSYKEKFIKVDNKNYVKEAEAVEGDILKLGFLSYMIRFEIIRKGANTSVIRSTI 120

Query: 120 EYELREEAAANASFVSIDTVAKIAEISKNYL 150
           EYE+ +E     + VS  ++A  AE    Y+
Sbjct: 121 EYEIGDEHPELQAMVSTASLAATAEKFAEYI 151

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.2.1.78	LOW CONFIDENCE prediction!
3rd Layer	4.2.1	LOW CONFIDENCE prediction!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: 4336835 pathogenesis-related Bet v I family protein, putative, expressed (161 aa) (Oryza sativa Japonica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	2e-27
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	2e-10
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	1e-04
smart01037	151	smart01037, Bet_v_1, Pathogenesis-related protein	3e-04

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score = 99.2 bits (248), Expect = 2e-27
 Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 2/125 (1%)

Query: 3   GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGT 62
           G L HE+E+ VPA + W+ +       L  K    ++ +E++EGDGG G+I  I F PG 
Sbjct: 1   GTLEHEVELKVPAEKLWKAFVL-DSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGG 59

Query: 63  PGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYE 122
                 KE+   +D + +     V+EG  L  G+  ++V  + + KG   C++K TIEYE
Sbjct: 60  K-VKYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYE 118

Query: 123 LREEA 127
            + +A
Sbjct: 119 KKGDA 123

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 9/156 (5%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKE-YDTVEEIEVVEGDGG-VGTILHIKF 58
           + G+L  E+E+ V A + ++ +       L+ K     ++ +EV EG+ G  G+I    +
Sbjct: 1   LVGKLETEVEIKVSADKFYKAFKLED--HLIPKAIPHHIQGVEVHEGEWGTGGSIKKWTY 58

Query: 59  -KPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKS 117
            + G P     KE+    D K +     V+EG  L+  +  F    ++I K +   I+K 
Sbjct: 59  TEDGKPKVV--KERIEADDEKNKTITYSVLEGDVLE-DYKSFITTLQVIPKSNGGSIVKW 115

Query: 118 TIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN 153
           TIEYE   +         +  V K+ +  + +LL N
Sbjct: 116 TIEYEKIGDDVP-EPEKYLKFVVKLTKDIEAHLLAN 150

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 10/120 (8%)

Query: 8   ELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAG 67
            + ++ PA + W L      +    K +  V   E+  G  GVG +  +  K G      
Sbjct: 6   SVTIDAPADKVWALLSDFGGL---HKWHPAVASCELEGGGPGVGAVRTVTLKDGGT---- 58

Query: 68  YKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA 127
            +E+ + +D+ +R     +VEG    +    +     +  +G     +  T E++  E  
Sbjct: 59  VRERLLALDDAERRYSYRIVEG---PLPVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGL 115

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

>gnl|CDD|198105 smart01037, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 9/156 (5%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGG-VGTILHIKF 58
           + G L  E+ +   A + ++ +          K     ++ +++ EGD G  G+I    +
Sbjct: 2   LSGTLETEVPIKGSAEKFFKRFV--SRNHHFPKATGHHIQGVDLHEGDWGSHGSIKIWNY 59

Query: 59  KPGTPGFAG-YKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKS 117
                G    +KE+   +D++K+  +T  V  G +   +  F+   ++  K     ++K 
Sbjct: 60  --TVDGKEEVFKERIEAVDDEKK-TITFRVLEGDVMEEYKSFKGTIQVTPKSGGGSVVKW 116

Query: 118 TIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN 153
           T+EYE   E         +D V ++ +    +LL  
Sbjct: 117 TLEYEKINEDVPEPE-KYMDFVVELTKDIDEHLLKE 151

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10.- Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	100.0
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	100.0
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.78
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.68
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.58
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.5
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.48
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.47
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.45
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.38
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.34
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.32
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.3
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.26
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.26
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	99.24
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.22
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	99.18
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.17
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	99.15
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	99.06
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	99.04
PRK10724	158	hypothetical protein; Provisional	98.91
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	98.73
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.61
COG5637	217	Predicted integral membrane protein [Function unkn	98.55
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.55
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	98.46
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.44
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.33
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	98.26
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	98.24
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.23
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.2
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	98.17
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.17
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	98.04
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	97.91
COG3832	149	Uncharacterized conserved protein [Function unknow	97.83
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	97.68
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	97.65
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	97.57
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	97.46
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	97.26
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	97.21
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	97.19
cd08874	205	START_STARD9-like C-terminal START domain of mamma	96.21
cd08913	240	START_STARD14-like Lipid-binding START domain of m	95.59
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	95.2
cd08905	209	START_STARD1-like Cholesterol-binding START domain	95.02
cd08914	236	START_STARD15-like Lipid-binding START domain of m	94.79
cd00177	193	START Lipid-binding START domain of mammalian STAR	94.55
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	93.25
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	93.12
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	93.08
cd08906	209	START_STARD3-like Cholesterol-binding START domain	92.23
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	91.8
cd08871	222	START_STARD10-like Lipid-binding START domain of m	89.99
COG4276	153	Uncharacterized conserved protein [Function unknow	89.8
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	87.54
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	87.28
cd08867	206	START_STARD4_5_6-like Lipid-binding START domain o	84.11
smart00234	206	START in StAR and phosphatidylcholine transfer pro	84.11
cd08908	204	START_STARD12-like C-terminal lipid-binding START	80.59

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=100.00  E-value=1.2e-41  Score=252.33  Aligned_cols=148  Identities=34%  Similarity=0.536  Sum_probs=135.6

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCc-eEEEEEecCCCCCcceEEEEEEEEeCC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVG-TILHIKFKPGTPGFAGYKEKFIEIDNK   78 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~G-svR~~~~~~g~~~~~~~kErl~~~D~~   78 (155)
                      ++++++.++++++||+++|++++  +.++++|+++|+ |++++++||||++| |||.|+|..+ ++.+.+|||++.+|++
T Consensus         2 ~~~~~~~E~~~~~~a~k~~ka~~--~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~-~~~~~~Kekve~~D~~   78 (151)
T PF00407_consen    2 GVGKLEVEVEVKVSADKLWKAFK--SSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPG-GPFKYVKEKVEAIDEE   78 (151)
T ss_dssp             CEEEEEEEEEESS-HHHHHHHHT--THHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETT-SSEEEEEEEEEEEETT
T ss_pred             CcEEEEEEEEecCCHHHHHHHHh--cCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCC-CCcceeEEEEEeecCC
Confidence            46899999999999999999998  688999999999 99999999998877 9999999998 7789999999999999


Q ss_pred             CCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhC
Q 031651           79 KRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN  153 (155)
Q Consensus        79 ~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~  153 (155)
                      +|+++|+++||+++. .|++|.+++++.|+++|+|+++|+++|+++++.. ++|..+++++..|+|++|+||++|
T Consensus        79 ~~~~~y~viEGd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~-~~p~~~~~~~~~~~K~ieayLlan  151 (151)
T PF00407_consen   79 NKTITYTVIEGDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDV-PPPEKYLDFAVGMFKAIEAYLLAN  151 (151)
T ss_dssp             TTEEEEEEEEETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSC-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEEEeccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCCCC-CCcHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999887 6999999999999999999999999999999863 344567899999999999999997

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=100.00  E-value=6.5e-37  Score=225.86  Aligned_cols=147  Identities=30%  Similarity=0.480  Sum_probs=130.6

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccch-hhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLV-EKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~l-p~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      |+++++++|+|||++||++++  ||.+.+ +.|+|.|++|++++|+|++||+|.|+|.++ ++.+.+||||+.+|+++|+
T Consensus         1 ~~~~~e~~i~a~ad~vW~~~~--~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~-~~~~~~kE~l~~~D~~~~~   77 (148)
T cd07816           1 GTLEHEVELKVPAEKLWKAFV--LDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPG-GKVKYVKERIDAVDEENKT   77 (148)
T ss_pred             CcEEEEEEecCCHHHHHHHHh--cChhhccccccccccEEEEEecCCCCceEEEEEEcCC-CcceEEEEEEEEEcccccE
Confidence            689999999999999999999  887534 556677999999999999999999999988 5678999999999999999


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhC
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN  153 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~  153 (155)
                      ++|++++|+++..+|++|+++++|.|.++++|+++|+++|++.+++ .++|..+++.+..++++++.|++.+
T Consensus        78 ~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~  148 (148)
T cd07816          78 YKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDA-EPPEEEIKAGKEKALKMFKAVEAYL  148 (148)
T ss_pred             EEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-CCCHHHHHhHHHHHHHHHHHHHhcC
Confidence            9999999998654699999999999998889999999999999886 3444467899999999999998753

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.78  E-value=2e-17  Score=117.65  Aligned_cols=135  Identities=19%  Similarity=0.312  Sum_probs=108.8

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      .++.+++|++|+++||+++.  |+.+ +++|+|.++++++.++..++|+++.+.+..+ .   .+++++..+|+.++.++
T Consensus         2 ~i~~~~~i~a~~~~V~~~l~--d~~~-~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g-~---~~~~~i~~~~~~~~~i~   74 (140)
T cd07821           2 KVTVSVTIDAPADKVWALLS--DFGG-LHKWHPAVASCELEGGGPGVGAVRTVTLKDG-G---TVRERLLALDDAERRYS   74 (140)
T ss_pred             cEEEEEEECCCHHHHHHHHh--CcCc-hhhhccCcceEEeecCCCCCCeEEEEEeCCC-C---EEEEEehhcCccCCEEE
Confidence            57889999999999999999  9876 7899999999998776546899999998765 3   78999999998888999


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHH
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYL  150 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l  150 (155)
                      |++.+|+.   ++.++.+++++.|.++|+|.++|+..|++.+..  +.+.   ...+.....++.|.++|
T Consensus        75 ~~~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~L~~~~  139 (140)
T cd07821          75 YRIVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGL--TDELARAFLTGVYRAGLAALKAAL  139 (140)
T ss_pred             EEecCCCC---CcccceEEEEEEECCCCccEEEEEEEEecCCCc--chHHHHHHHHHHHHHHHHHHHHhh
Confidence            99998743   677889999999988878999999999988652  2211   23455555566666554

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.68  E-value=2.4e-14  Score=101.76  Aligned_cols=106  Identities=22%  Similarity=0.316  Sum_probs=89.1

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      +++.+++|++||++||+++.  |+.+ +++|+|.+.++++.+++ ++|..+.++....    ..+++++..+|++++.+.
T Consensus         3 ~~~~~~~v~a~~e~V~~~l~--d~~~-~~~w~~~~~~~~~~~~~-~~~~~~~~~~~g~----~~~~~~i~~~~~~~~~~~   74 (139)
T PF10604_consen    3 KVEVSIEVPAPPEAVWDLLS--DPEN-WPRWWPGVKSVELLSGG-GPGTERTVRVAGR----GTVREEITEYDPEPRRIT   74 (139)
T ss_dssp             EEEEEEEESS-HHHHHHHHT--TTTG-GGGTSTTEEEEEEEEEC-STEEEEEEEECSC----SEEEEEEEEEETTTTEEE
T ss_pred             EEEEEEEECCCHHHHHHHHh--Chhh-hhhhhhceEEEEEcccc-ccceeEEEEeccc----cceeEEEEEecCCCcEEE
Confidence            78999999999999999999  9876 79999999999987633 4566677776542    379999999998899999


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL  123 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~  123 (155)
                      |++.  .   .++.++..++++.|.++| |.++|+.+|++
T Consensus        75 ~~~~--~---~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~  108 (139)
T PF10604_consen   75 WRFV--P---SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP  108 (139)
T ss_dssp             EEEE--S---SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred             EEEE--e---cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence            9996  1   157778999999999865 99999999998

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.58  E-value=1.8e-13  Score=98.69  Aligned_cols=130  Identities=15%  Similarity=0.115  Sum_probs=92.2

Q ss_pred             EEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCce-------EEEEEecCCCCCcceEEEEEEEEeCC
Q 031651            6 SHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGT-------ILHIKFKPGTPGFAGYKEKFIEIDNK   78 (155)
Q Consensus         6 ~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~Gs-------vR~~~~~~g~~~~~~~kErl~~~D~~   78 (155)
                      +.++.|++|+++||+++.  |+.+ +|+|+|++++++++++.+ .+.       .+.+...-    ...+..++...++.
T Consensus         2 ~~~~~i~a~~~~Vw~~l~--D~~~-~~~w~p~v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~   73 (144)
T cd08866           2 VARVRVPAPPETVWAVLT--DYDN-LAEFIPNLAESRLLERNG-NRVVLEQTGKQGILFFKF----EARVVLELREREEF   73 (144)
T ss_pred             eEEEEECCCHHHHHHHHh--Chhh-HHhhCcCceEEEEEEcCC-CEEEEEEeeeEEEEeeee----eEEEEEEEEEecCC
Confidence            578899999999999999  9987 799999999999887653 122       11111100    12456667777767


Q ss_pred             CCeEEEEEEeCCccCcCceEEEEEEEEEeeCC-CceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHH
Q 031651           79 KRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGS-DSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYL  150 (155)
Q Consensus        79 ~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~-g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l  150 (155)
                      ++.+.|++++|+     +..|.++.++.|.++ |+|.++|..+|++...  .+...   ...+.+..+++.|.+.+
T Consensus        74 ~~~i~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~--~p~~l~~~~~~~~~~~~l~~lr~~a  142 (144)
T cd08866          74 PRELDFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF--APVFLVEFVLRQDLPTNLLAIRAEA  142 (144)
T ss_pred             CceEEEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999998764     556899999999887 6899999999998764  23322   12344445555555443

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.50  E-value=1.1e-12  Score=94.32  Aligned_cols=113  Identities=16%  Similarity=0.116  Sum_probs=83.7

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT   84 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   84 (155)
                      ++++++|++|+++||+++.  |+.+ +|+|+|. .+++.++++++...++.+..... +. ..-.+....+|++.+.+.|
T Consensus         1 ~~~s~~i~ap~~~V~~~l~--D~~~-~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~i~~   74 (142)
T cd08861           1 VEHSVTVAAPAEDVYDLLA--DAER-WPEFLPT-VHVERLELDGGVERLRMWATAFD-GS-VHTWTSRRVLDPEGRRIVF   74 (142)
T ss_pred             CeEEEEEcCCHHHHHHHHH--hHHh-hhccCCC-ceEEEEEEcCCEEEEEEEEEcCC-Cc-EEEEEEEEEEcCCCCEEEE
Confidence            3688999999999999999  9987 7999997 66665554322224555555422 21 1222444567888999999


Q ss_pred             EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651           85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE  126 (155)
Q Consensus        85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~  126 (155)
                      ..+++..   .+..+.++.++.|.++++|.|+|+.+|++...
T Consensus        75 ~~~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~  113 (142)
T cd08861          75 RQEEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTLGID  113 (142)
T ss_pred             EEeeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEECCC
Confidence            9987644   46778899999999877899999999998754

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.48  E-value=3.2e-12  Score=90.54  Aligned_cols=107  Identities=17%  Similarity=0.162  Sum_probs=84.3

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC-CCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD-GGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      ++++++|++|+++||+++.  |+.+ +++|.|.+.+++...+. .++|+...+....+ +..-.+++++...| .++.++
T Consensus         1 ~~~~~~i~ap~~~Vw~~l~--d~~~-~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~-g~~~~~~~~v~~~~-p~~~~~   75 (140)
T cd08865           1 VEESIVIERPVEEVFAYLA--DFEN-APEWDPGVVEVEKITDGPVGVGTRYHQVRKFL-GRRIELTYEITEYE-PGRRVV   75 (140)
T ss_pred             CceEEEEcCCHHHHHHHHH--Cccc-hhhhccCceEEEEcCCCCCcCccEEEEEEEec-CceEEEEEEEEEec-CCcEEE
Confidence            4678999999999999999  9977 79999998888876543 46788888876533 32335789999887 568899


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL  123 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~  123 (155)
                      |....++.      .+..++++.+.++ +|.++|+.+|+.
T Consensus        76 ~~~~~~~~------~~~~~~~~~~~~~-~t~v~~~~~~~~  108 (140)
T cd08865          76 FRGSSGPF------PYEDTYTFEPVGG-GTRVRYTAELEP  108 (140)
T ss_pred             EEecCCCc------ceEEEEEEEEcCC-ceEEEEEEEEcc
Confidence            99865532      2578999998765 699999999997

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.47  E-value=1.5e-11  Score=87.66  Aligned_cols=111  Identities=17%  Similarity=0.194  Sum_probs=81.5

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC-CCCceEEEEEecCCCCCcceEEEEEEEEe-CCCCe
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD-GGVGTILHIKFKPGTPGFAGYKEKFIEID-NKKRV   81 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~~kErl~~~D-~~~~~   81 (155)
                      +++.+++|++|+++||+++.  |+.+ +|+|+|.+.++++++++ ++.+....+++..+ +   ...+-+..++ +..+.
T Consensus         3 ~v~~s~~i~ap~e~V~~~l~--D~~~-~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~   75 (140)
T cd07819           3 KVSREFEIEAPPAAVMDVLA--DVEA-YPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAY-G---IKDTYALEYTWDGAGS   75 (140)
T ss_pred             eEEEEEEEeCCHHHHHHHHh--Chhh-hhhhCcceEEEEEeccCCCCCEEEEEEEEeee-e---EEEEEEEEEEEcCCCc
Confidence            68899999999999999999  9977 89999999999986654 33333444555433 2   1112122222 22678


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE  126 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~  126 (155)
                      ++|+..+|.    +...+..++++.|.++ +|.++|+.++++...
T Consensus        76 i~~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~~  115 (140)
T cd07819          76 VSWTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTVP  115 (140)
T ss_pred             EEEEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEecCC
Confidence            999998775    4667889999999877 799999999998553

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.45  E-value=3.1e-12  Score=92.03  Aligned_cols=132  Identities=14%  Similarity=0.173  Sum_probs=95.2

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT   84 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   84 (155)
                      ++.+++|++|++.||+++.  |..+ +|+|+|++++++++++++ .+....+.+.-+ +....+..++. +++ ++++++
T Consensus         1 ~~~s~~i~ap~~~v~~~i~--D~~~-~~~~~p~~~~~~vl~~~~-~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~~i~~   73 (138)
T cd07813           1 YSKSRLVPYSAEQMFDLVA--DVER-YPEFLPWCTASRVLERDE-DELEAELTVGFG-GIRESFTSRVT-LVP-PESIEA   73 (138)
T ss_pred             CeEEEEcCCCHHHHHHHHH--HHHh-hhhhcCCccccEEEEcCC-CEEEEEEEEeec-cccEEEEEEEE-ecC-CCEEEE
Confidence            3678999999999999999  9977 899999999999998764 344444555433 22234455555 665 778999


Q ss_pred             EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHH
Q 031651           85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYL  150 (155)
Q Consensus        85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l  150 (155)
                      ..++|+     ++.+.++.++.|.++|+|.++|..+|++.+..  +...   .+.+....+.+.+.+-+
T Consensus        74 ~~~~g~-----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l--~~~l~~~~~~~~~~~~l~~f~~~~  135 (138)
T cd07813          74 ELVDGP-----FKHLEGEWRFKPLGENACKVEFDLEFEFKSRL--LEALAGLVFDEVAKKMVDAFEKRA  135 (138)
T ss_pred             EecCCC-----hhhceeEEEEEECCCCCEEEEEEEEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988773     55578999999998889999999999987542  2211   23455555555555544

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.38  E-value=8.3e-11  Score=83.46  Aligned_cols=111  Identities=16%  Similarity=0.116  Sum_probs=83.3

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT   84 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   84 (155)
                      ++.++.|++|+++||+++.  |+.+ +++|+|.+..++...  .++|+...+.+..+.+....+.+++..+|+ .+.+.|
T Consensus         2 v~~~~~i~ap~~~Vw~~~~--d~~~-~~~w~~~~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~   75 (141)
T cd07822           2 ISTEIEINAPPEKVWEVLT--DFPS-YPEWNPFVRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAW   75 (141)
T ss_pred             eEEEEEecCCHHHHHHHHh--cccc-ccccChhheeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEE
Confidence            6789999999999999999  8876 799999877766321  456778777765431223467888999976 578999


Q ss_pred             EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031651           85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR  124 (155)
Q Consensus        85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~  124 (155)
                      +...++.   ..-....++.+.+.++++|.++|+..|...
T Consensus        76 ~~~~~~~---~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~  112 (141)
T cd07822          76 RGGLPFP---GLLDGEHSFELEPLGDGGTRFVHRETFSGL  112 (141)
T ss_pred             EecCCCC---cEeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence            9876654   223456789999986678999999887643

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.34  E-value=2e-10  Score=81.73  Aligned_cols=107  Identities=9%  Similarity=0.015  Sum_probs=81.7

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      +++.+++|+||+++||+++.  |+.+ +|+|+|++.++++..+..++|+...++...+ .   .+..++.++++. +.++
T Consensus         2 ~~~~~~~i~Ap~~~Vw~~~~--d~~~-~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~-~---~~~~~i~~~~p~-~~~~   73 (138)
T cd08862           2 KFEATIVIDAPPERVWAVLT--DVEN-WPAWTPSVETVRLEGPPPAVGSSFKMKPPGL-V---RSTFTVTELRPG-HSFT   73 (138)
T ss_pred             EEEEEEEEcCCHHHHHHHHH--hhhh-cccccCcceEEEEecCCCCCCcEEEEecCCC-C---ceEEEEEEecCC-CEEE
Confidence            47889999999999999999  9876 7999999999997654326787766665433 2   577888888754 5688


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR  124 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~  124 (155)
                      |+... +     ...+..++++++.++++|.++|+.+|...
T Consensus        74 ~~~~~-~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~~  108 (138)
T cd08862          74 WTGPA-P-----GISAVHRHEFEAKPDGGVRVTTSESLSGP  108 (138)
T ss_pred             EEecC-C-----CEEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence            87543 2     23446789999987678999999988753

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.32  E-value=1.7e-10  Score=79.74  Aligned_cols=111  Identities=21%  Similarity=0.247  Sum_probs=87.2

Q ss_pred             EEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC-CCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651            6 SHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD-GGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT   84 (155)
Q Consensus         6 ~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   84 (155)
                      +.++.|++|+++||+++.  |+.+ +++|.|.+.++++.++. ...|....+.+..  +.......++..+++ +..++|
T Consensus         2 ~~~~~i~a~~~~v~~~l~--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~-~~~~~~   75 (141)
T cd07812           2 EASIEIPAPPEAVWDLLS--DPER-WPEWSPGLERVEVLGGGEGGVGARFVGGRKG--GRRLTLTSEVTEVDP-PRPGRF   75 (141)
T ss_pred             cEEEEeCCCHHHHHHHHh--Chhh-hhhhCcccceEEEcCCCCccceeEEEEEecC--CccccceEEEEEecC-CCceEE
Confidence            578899999999999999  8876 79999999988877654 3566766666641  222367888888876 778999


Q ss_pred             EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651           85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE  126 (155)
Q Consensus        85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~  126 (155)
                      +...++..    ..+..++++.+.++++|.++|+.++.+...
T Consensus        76 ~~~~~~~~----~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~  113 (141)
T cd07812          76 RVTGGGGG----VDGTGEWRLEPEGDGGTRVTYTVEYDPPGP  113 (141)
T ss_pred             EEecCCCC----cceeEEEEEEECCCCcEEEEEEEEEecCCc
Confidence            99877642    457889999998765899999999998754

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.30  E-value=2e-10  Score=82.68  Aligned_cols=138  Identities=11%  Similarity=0.092  Sum_probs=91.8

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC--CCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD--GGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd--g~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      ++.+++|+||+++||+++.  |+.+ +|+|.|.........++  -++|+...+..... +....+..++..+++ ++.+
T Consensus         2 i~~~~~i~ap~e~Vw~~l~--d~~~-~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-g~~~~~~~~v~~~~p-~~~l   76 (144)
T cd07825           2 VSVSRTVDAPAEAVFAVLA--DPRR-HPEIDGSGTVREAIDGPRILAVGDVFRMAMRLD-GGPYRITNHVVAFEE-NRLI   76 (144)
T ss_pred             eEEEEEEeCCHHHHHHHHh--Cccc-cceeCCCCccccccCCCccCCCCCEEEEEEEcC-CCceEEEEEEEEECC-CCEE
Confidence            6889999999999999999  9976 79999862222222333  36788887776542 222356677887755 5569


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCccc-C-CchhhHHHHHHHHHHHHHHH
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAA-N-ASFVSIDTVAKIAEISKNYL  150 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~-~-~~~~~~~~~~~~~k~~e~~l  150 (155)
                      +|+..-.+.   +......++++++.++|+|.++++..|...+.... . ............++.|++||
T Consensus        77 ~~~~~~~~~---~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~  143 (144)
T cd07825          77 AWRPGPAGQ---EPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA  143 (144)
T ss_pred             EEEccCCCC---CCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence            998642121   12224567888898777899999999886644211 1 11124566777778887776

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.26  E-value=3.6e-10  Score=81.98  Aligned_cols=112  Identities=12%  Similarity=0.019  Sum_probs=81.3

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcce---EEE--EcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCC
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEE---IEV--VEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNK   78 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s---~e~--~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~   78 (155)
                      +++.++.|++|+++||+++.  |+.+ +|+|+|....   ++.  .+++.++|+...++...+.+   ....++..++ .
T Consensus         3 ~~~~s~~I~ap~e~V~~~i~--D~~~-~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~~~v~~~~-p   75 (150)
T cd07818           3 RVERSIVINAPPEEVFPYVN--DLKN-WPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVG---EGEMEITESV-P   75 (150)
T ss_pred             EEEEEEEEeCCHHHHHHHHh--Cccc-CcccCchhhcCcceEEEecCCCCCCCeEEEEecCCccc---ceEEEEEecC-C
Confidence            57899999999999999999  9977 7999997433   221  12334688887776554212   3456777775 4


Q ss_pred             CCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651           79 KRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE  126 (155)
Q Consensus        79 ~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~  126 (155)
                      ++.+.|++..++++  + .....++++.|.+ +||.++|+.+|+....
T Consensus        76 ~~~i~~~~~~~~~~--~-~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~  119 (150)
T cd07818          76 NERIEYELRFIKPF--E-ATNDVEFTLEPVG-GGTKVTWGMSGELPFP  119 (150)
T ss_pred             CcEEEEEEEecCCc--c-ccceEEEEEEEcC-CceEEEEEEEecCCch
Confidence            67899999865442  1 2567899999994 5799999999986543

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.26  E-value=3.7e-10  Score=80.25  Aligned_cols=136  Identities=15%  Similarity=0.057  Sum_probs=88.0

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT   84 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   84 (155)
                      ++.+++|+||+++||+++.  |+.+ +|+|+|.+..++.....|  |+.+......+ +....+..++..+|+. +.+.|
T Consensus         2 i~~s~~I~a~~~~Vw~~l~--d~~~-~~~w~~~~~~~~~~~~~G--g~~~~~~~~~~-g~~~~~~~~i~~~~~~-~~i~~   74 (139)
T cd07814           2 ITIEREFDAPPELVWRALT--DPEL-LAQWFGPTTTAEMDLRVG--GRWFFFMTGPD-GEEGWVSGEVLEVEPP-RRLVF   74 (139)
T ss_pred             eEEEEEecCCHHHHHHHcC--CHHH-HHhhhCcCCceEEcccCC--ceEEEEEECCC-CCEEeccEEEEEEcCC-CeEEE
Confidence            6789999999999999999  8866 899999622222111122  67765554432 3334678899999754 78999


Q ss_pred             EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHH
Q 031651           85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYL  150 (155)
Q Consensus        85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l  150 (155)
                      +...++..  +.-....++++.|.+ ++|.++|+.+|.+........-.........++..|.+||
T Consensus        75 ~~~~~~~~--~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~  137 (139)
T cd07814          75 TWAFSDET--PGPETTVTVTLEETG-GGTRLTLTHSGFPEEDAEQEAREGMEEGWTGTLDRLKALL  137 (139)
T ss_pred             EecccCCC--CCCceEEEEEEEECC-CCEEEEEEEEccChHhHHHHHHhCHhhHHHHHHHHHHHHh
Confidence            99876530  223457888899988 4799999999987532100000012344445555555554

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=99.24  E-value=7.3e-10  Score=79.21  Aligned_cols=113  Identities=13%  Similarity=0.166  Sum_probs=76.0

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      +++.++++++|+++||+++.  |..+ +++|+|+++++++++++ .......+.+... +..-...-++..+|+ ++.+.
T Consensus         2 ~~~~~~~i~a~~e~v~~~l~--D~~~-~~~w~p~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~   75 (144)
T cd05018           2 KISGEFRIPAPPEEVWAALN--DPEV-LARCIPGCESLEKIGPN-EYEATVKLKVGPV-KGTFKGKVELSDLDP-PESYT   75 (144)
T ss_pred             eeeeEEEecCCHHHHHHHhc--CHHH-HHhhccchhhccccCCC-eEEEEEEEEEccE-EEEEEEEEEEEecCC-CcEEE
Confidence            46788999999999999999  9976 89999998888866533 2111111222110 101112445555444 46777


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE  125 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~  125 (155)
                      +.....+..  ....+..++++.|. +++|.++|+.+|++.+
T Consensus        76 ~~~~~~~~~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g  114 (144)
T cd05018          76 ITGEGKGGA--GFVKGTARVTLEPD-GGGTRLTYTADAQVGG  114 (144)
T ss_pred             EEEEEcCCC--ceEEEEEEEEEEec-CCcEEEEEEEEEEEcc
Confidence            776543321  35678999999998 5689999999999765

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.22  E-value=1.4e-09  Score=79.98  Aligned_cols=114  Identities=18%  Similarity=0.305  Sum_probs=80.5

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCC-CCceEEEEEecCCCCCc-ceEEEEEEEEeCCCC
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDG-GVGTILHIKFKPGTPGF-AGYKEKFIEIDNKKR   80 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg-~~GsvR~~~~~~g~~~~-~~~kErl~~~D~~~~   80 (155)
                      |..+++|+|++||++||+++.  |..+ +|.|+|.+.++++++.++ +.|+.-.+.+..+ |.. .+..++  .+|...+
T Consensus         1 ~~~~~si~i~a~~~~v~~lva--Dv~~-~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~-g~~~~w~s~~--~~~~~~~   74 (146)
T cd08860           1 GRTDNSIVIDAPLDLVWDMTN--DIAT-WPDLFSEYAEAEVLEEDGDTVRFRLTMHPDAN-GTVWSWVSER--TLDPVNR   74 (146)
T ss_pred             CcceeEEEEcCCHHHHHHHHH--hhhh-hhhhccceEEEEEEEecCCeEEEEEEEEeccC-CEEEEEEEEE--EecCCCc
Confidence            346799999999999999999  9987 899999999999887642 4443222233222 211 222222  2688888


Q ss_pred             eEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031651           81 VRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA  127 (155)
Q Consensus        81 ~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~  127 (155)
                      ++.+.-.. ..   |+..-..+.+|+|.++| |.|++..+|+..++.
T Consensus        75 ~i~~~~~~-~~---p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~  116 (146)
T cd08860          75 TVRARRVE-TG---PFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA  116 (146)
T ss_pred             EEEEEEec-CC---CcceeeeeEEEEECCCC-EEEEEEEEEEECCCC
Confidence            88874211 12   57777889999998664 999999999977654

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.18  E-value=9.5e-10  Score=79.25  Aligned_cols=109  Identities=16%  Similarity=0.216  Sum_probs=82.4

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC---CCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD---GGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd---g~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      ++.+++|++|+++||+.+.  |..+ +|+|+|.+.++++++.+   ..+|+.-.+.+... +..-.-+-+++.++ .++.
T Consensus         1 ~~~s~~I~ap~e~V~~~~~--d~~~-~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~-~~~~~w~~~it~~~-p~~~   75 (137)
T cd07820           1 LERSTVIPAPIEEVFDFHS--RPDN-LERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHF-GIPQRWTTEITEVE-PPRR   75 (137)
T ss_pred             CeEEEEcCCCHHHHHHHHc--Ccch-HHhcCCCCCCeEEEecCCCcccCCcEEEEEEEec-CCceEEEEEEEEEc-CCCe
Confidence            4678999999999999999  9877 79999998899987433   24578777777654 32123455666664 4667


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR  124 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~  124 (155)
                      +++....|+     +..+..++.+.+.++ ||.++++++|+..
T Consensus        76 f~~~~~~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~p  112 (137)
T cd07820          76 FVDEQVSGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRLP  112 (137)
T ss_pred             EEEEeccCC-----chhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence            999887654     445677888988776 6999999999973

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.17  E-value=1.8e-09  Score=76.87  Aligned_cols=108  Identities=17%  Similarity=0.175  Sum_probs=78.6

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      .++.+++|++|+++||+++.  |+.+ +|+|.|.+++++++.+.   +....+.+..|  .......++..++ .++.+.
T Consensus         1 ~v~~~i~I~ap~e~V~~~~~--D~~~-~~~w~~~~~~~~~~~~~---~~~~~~~~~~g--~~~~~~~~v~~~~-~~~~i~   71 (139)
T cd07817           1 TVEKSITVNVPVEEVYDFWR--DFEN-LPRFMSHVESVEQLDDT---RSHWKAKGPAG--LSVEWDAEITEQV-PNERIA   71 (139)
T ss_pred             CeeEEEEeCCCHHHHHHHHh--Chhh-hHHHhhhhcEEEEcCCC---ceEEEEecCCC--CcEEEEEEEeccC-CCCEEE
Confidence            36889999999999999999  9977 79999999999976442   22222333323  2234566666554 455699


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE  126 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~  126 (155)
                      |....|.     + .+..++.+.+.++++|.++++..|++...
T Consensus        72 ~~~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~~  108 (139)
T cd07817          72 WRSVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPGG  108 (139)
T ss_pred             EEECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence            9876653     2 34688889997777899999999997653

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.15  E-value=4e-09  Score=76.78  Aligned_cols=109  Identities=12%  Similarity=0.193  Sum_probs=77.1

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEc--CCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVE--GDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~e--Gdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      .+.+.+|++|+++||+++.  |..+ +|+|+|.++++++++  ++.++|+.-++......+....+.-++... +..+.+
T Consensus         3 ~~~~~~i~ap~e~Vw~~~t--D~~~-~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~-~p~~~~   78 (146)
T cd07824           3 FHTVWRIPAPPEAVWDVLV--DAES-WPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRI-EPLSLL   78 (146)
T ss_pred             ceEEEEecCCHHHHHHHHh--Chhh-cchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEee-cCCcEE
Confidence            4567789999999999999  9876 899999999999887  334677765554332212112344455554 457788


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE  125 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~  125 (155)
                      .|.. +|+.   .   ...++++.+.++ ||.++++.+++..+
T Consensus        79 ~~~~-~g~~---~---~~~~~~~~~~~~-gt~vt~~~~~~~~~  113 (146)
T cd07824          79 EVRA-SGDL---E---GVGRWTLAPDGS-GTVVRYDWEVRTTK  113 (146)
T ss_pred             EEEE-EEee---e---EEEEEEEEEcCC-CEEEEEEEEEEcCH
Confidence            8885 5643   1   257888988655 69999999999743

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=99.06  E-value=1.8e-08  Score=71.26  Aligned_cols=105  Identities=21%  Similarity=0.334  Sum_probs=75.5

Q ss_pred             ecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEEEEeCC
Q 031651           11 VNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGG   90 (155)
Q Consensus        11 i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~ileg~   90 (155)
                      |++|+++||+++.  |..+ +|.|+|.++++++++.++. +..-.+....+ +.......++... ...+ +.+...+| 
T Consensus         1 V~ap~~~V~~~i~--D~e~-~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~~~~~~~g-   72 (130)
T PF03364_consen    1 VNAPPEEVWSVIT--DYEN-YPRFFPPVKEVRVLERDGD-GMRARWEVKFG-GIKRSWTSRVTED-PPER-IRFEQISG-   72 (130)
T ss_dssp             ESS-HHHHHHHHT--TGGG-HHHHCTTEEEEEEEEEECC-EEEEEEEECTT-TTCEEEEEEEEEE-CTTT-EEEESSET-
T ss_pred             CCCCHHHHHHHHH--HHHH-HHHhCCCCceEEEEEeCCC-eEEEEEEEecC-CEEEEEEEEEEEE-Eeee-eeeeecCC-
Confidence            6899999999999  9976 8999999999999987754 33334555544 3334556666643 4444 77777665 


Q ss_pred             ccCcCceEEEEEEEEEeeCC--CceEEEEEEEEEEcCCc
Q 031651           91 YLDVGFTLFRVIFEIIEKGS--DSCIIKSTIEYELREEA  127 (155)
Q Consensus        91 ~~~~~~~~y~~ti~v~~~~~--g~s~v~W~~~y~~~~~~  127 (155)
                          +++.+..+.++.+.++  |+|.++++.+|+.....
T Consensus        73 ----~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~  107 (130)
T PF03364_consen   73 ----PFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPG  107 (130)
T ss_dssp             ----TEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSS
T ss_pred             ----CchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCc
Confidence                4788999999999875  46778888888875443

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.04  E-value=1.4e-08  Score=73.86  Aligned_cols=113  Identities=19%  Similarity=0.233  Sum_probs=71.2

Q ss_pred             EEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceE--EEEEEEEeCCCCeEE
Q 031651            6 SHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGY--KEKFIEIDNKKRVRV   83 (155)
Q Consensus         6 ~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~--kErl~~~D~~~~~~~   83 (155)
                      +.+++|++|+++||+++.  |..+ ++.|+|++++++..+++ ..  .-.+++.-+ +-...+  +=++..++...+.+.
T Consensus         2 ~~~~~v~a~pe~vw~~l~--D~~~-~~~~~pg~~~~~~~~~~-~~--~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~   74 (146)
T cd07823           2 ENEFTVPAPPDRVWALLL--DIER-VAPCLPGASLTEVEGDD-EY--KGTVKVKLG-PISASFKGTARLLEDDEAARRAV   74 (146)
T ss_pred             CceEEecCCHHHHHHHhc--CHHH-HHhcCCCceeccccCCC-eE--EEEEEEEEc-cEEEEEEEEEEEEeccCCCcEEE
Confidence            568899999999999999  9866 78999999988854322 21  122333222 111122  224555555788888


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE  126 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~  126 (155)
                      +..-..+.....--....++++.| .+++|.++|+++++..+.
T Consensus        75 ~~~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~  116 (146)
T cd07823          75 LEATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGK  116 (146)
T ss_pred             EEEEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeE
Confidence            876431111001114567788888 446899999999986543

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PRK10724 hypothetical protein; Provisional

Probab=98.91  E-value=4.7e-08  Score=72.91  Aligned_cols=110  Identities=14%  Similarity=0.205  Sum_probs=82.6

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      .++.++.|++|++++|+++.  |..+ +|+|+|..+.+++++-++. +.+..++.+-+ |-......|.. +++ .+++.
T Consensus        16 ~i~~~~~v~~s~~~v~~lv~--Dve~-yp~flp~~~~s~vl~~~~~-~~~a~l~v~~~-g~~~~f~srv~-~~~-~~~I~   88 (158)
T PRK10724         16 QISRTALVPYSAEQMYQLVN--DVQS-YPQFLPGCTGSRVLESTPG-QMTAAVDVSKA-GISKTFTTRNQ-LTS-NQSIL   88 (158)
T ss_pred             eEEEEEEecCCHHHHHHHHH--HHHH-HHHhCcccCeEEEEEecCC-EEEEEEEEeeC-CccEEEEEEEE-ecC-CCEEE
Confidence            57888999999999999999  9876 8999999888888766532 33444444333 32334555555 444 44899


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE  125 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~  125 (155)
                      +.+++|+     ++.+.+..++.|.++++|.|+...+|+...
T Consensus        89 ~~~~~Gp-----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s  125 (158)
T PRK10724         89 MQLVDGP-----FKKLIGGWKFTPLSQEACRIEFHLDFEFTN  125 (158)
T ss_pred             EEecCCC-----hhhccceEEEEECCCCCEEEEEEEEEEEch
Confidence            9999873     566889999999887789999999999653

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=98.73  E-value=4.3e-07  Score=66.73  Aligned_cols=138  Identities=17%  Similarity=0.225  Sum_probs=88.2

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT   84 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   84 (155)
                      ++-+..|++|+++||+++.  |... +...+|+++|++ .+|+.-.+.+ .+.+..-.+ .-..+=++..+|+..++++-
T Consensus         3 ~~G~f~V~~p~e~Vw~~L~--dpe~-~a~ciPG~qs~e-~~g~e~~~~v-~l~ig~l~~-~~~g~~~~~~v~~~~~~~~i   76 (146)
T COG3427           3 YEGTFRVAAPPEAVWEFLN--DPEQ-VAACIPGVQSVE-TNGDEYTAKV-KLKIGPLKG-TFSGRVRFVNVDEPPRSITI   76 (146)
T ss_pred             ccceEEecCCHHHHHHHhc--CHHH-HHhhcCCcceee-ecCCeEEEEE-EEeecceeE-EEEEEEEEccccCCCcEEEE
Confidence            5678889999999999998  8866 678899999999 5676321222 223221101 01234456667788888888


Q ss_pred             EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccC-C---chhhHHHHHHHHHHHHHHHh
Q 031651           85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAAN-A---SFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~-~---~~~~~~~~~~~~k~~e~~l~  151 (155)
                      ..-.|...  ..-+..+.+++.|.+++ |++.|.+.-+-.+-..-- .   ...+.......+.-|.++|.
T Consensus        77 ~g~G~~~~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~  144 (146)
T COG3427          77 NGSGGGAA--GFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELA  144 (146)
T ss_pred             Eeeccccc--ceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88653332  46667888899998876 999999887754322111 1   00234444555555555554

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.61  E-value=2.3e-06  Score=62.21  Aligned_cols=109  Identities=18%  Similarity=0.211  Sum_probs=66.5

Q ss_pred             EEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEEEE
Q 031651            8 ELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVV   87 (155)
Q Consensus         8 ~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~il   87 (155)
                      +.+|++|+++||+++.  |... +-..+|++++++... +.--+.++ +.+.+- ...=..+=++..+|+.++.. ..+-
T Consensus         2 s~~v~a~~~~vw~~l~--D~~~-l~~ciPG~~~~e~~~-~~~~~~~~-v~vG~i-~~~~~g~~~~~~~~~~~~~~-~~~~   74 (140)
T PF06240_consen    2 SFEVPAPPEKVWAFLS--DPEN-LARCIPGVESIEKVG-DEYKGKVK-VKVGPI-KGTFDGEVRITEIDPPESYT-LEFE   74 (140)
T ss_dssp             EEEECS-HHHHHHHHT---HHH-HHHHSTTEEEEEEEC-TEEEEEEE-EESCCC-EEEEEEEEEEEEEETTTEEE-EEEE
T ss_pred             cEEecCCHHHHHHHhc--CHHH-HHhhCCCcEEeeecC-cEEEEEEE-EEeccE-EEEEEEEEEEEEcCCCcceE-eeee
Confidence            5789999999999999  8865 678999999999765 42112222 222111 00012344666677666653 3333


Q ss_pred             eCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651           88 EGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE  125 (155)
Q Consensus        88 eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~  125 (155)
                      ..+..  .-.+..+.+++...++++|.+.|+++++-.+
T Consensus        75 g~g~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G  110 (140)
T PF06240_consen   75 GRGRG--GGSSASANITLSLEDDGGTRVTWSADVEVGG  110 (140)
T ss_dssp             EEECT--CCEEEEEEEEEEECCCTCEEEEEEEEEEEEC
T ss_pred             ccCCc--cceEEEEEEEEEcCCCCCcEEEEEEEEEEcc
Confidence            22222  2334566777777666569999999999655

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=98.55  E-value=7e-07  Score=67.55  Aligned_cols=108  Identities=12%  Similarity=0.155  Sum_probs=81.6

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecC-CCCCcceEEEEEEEEeCCCCeE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKP-GTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~-g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      .+++.++|+.|+++||..++  |+.+ +|.||.++.|+++.+...   |  +|+... +....++ .-+|. -|..+..|
T Consensus        71 ~v~~~V~I~kPae~vy~~W~--dLe~-lP~~Mkhl~SVkVlddkr---S--rW~~~ap~g~~v~W-ea~it-~d~~~e~I  140 (217)
T COG5637          71 EVEVQVTIDKPAEQVYAYWR--DLEN-LPLWMKHLDSVKVLDDKR---S--RWKANAPLGLEVEW-EAEIT-KDIPGERI  140 (217)
T ss_pred             EEEEEEEeCChHHHHHHHHH--hhhh-hhHHHHhhceeeccCCCc---c--ceeEcCCCCceEEE-eehhh-ccCCCcEE
Confidence            35677889999999999999  9988 799999999999876542   2  355432 2122222 33444 57899999


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE  126 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~  126 (155)
                      .|.=++|.-+.  -   +..++|.+..+..|.|+.+++|.+-+.
T Consensus       141 ~W~Sl~Ga~v~--N---sG~VrF~~~pg~~t~V~v~lsY~~Pgg  179 (217)
T COG5637         141 QWESLPGARVE--N---SGAVRFYDAPGDSTEVKVTLSYRPPGG  179 (217)
T ss_pred             eeecCCCCcCC--C---CccEEeeeCCCCceEEEEEEEecCCcc
Confidence            99999996442  1   578889888777789999999997665

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.55  E-value=1.8e-06  Score=61.77  Aligned_cols=137  Identities=12%  Similarity=0.115  Sum_probs=78.8

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      .++.+++|+||+++||+++.  |... +++|.|... ....-|.+..|   .+.+.+..  .....-++..+ +.++.+.
T Consensus         2 ~i~~~i~i~a~~e~Vw~~~t--d~~~-~~~W~~~~~-~~~~~~~~~~g---~~~~~~~~--~~~~~~~i~~~-~p~~~l~   71 (145)
T cd08898           2 RIERTILIDAPRERVWRALT--DPEH-FGQWFGVKL-GPFVVGEGATG---EITYPGYE--HGVFPVTVVEV-DPPRRFS   71 (145)
T ss_pred             eeEEEEEecCCHHHHHHHhc--Chhh-hhhcccccC-CCcccCCccee---EEecCCCC--ccceEEEEEEe-CCCcEEE
Confidence            57899999999999999998  8755 789998621 11111222223   23343221  11345677777 5667778


Q ss_pred             EEEEeCCc---cC-cCceEEEEEEEEEeeCCCceEEEEEEE-EEEcCCcccC-CchhhHHHHHHHHHHHHHHHh
Q 031651           84 TDVVEGGY---LD-VGFTLFRVIFEIIEKGSDSCIIKSTIE-YELREEAAAN-ASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        84 Y~ileg~~---~~-~~~~~y~~ti~v~~~~~g~s~v~W~~~-y~~~~~~~~~-~~~~~~~~~~~~~k~~e~~l~  151 (155)
                      |+......   .. ..-.....++++.+.++ +|.++++-. |...++.... ......+.-..++..|++||-
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le  144 (145)
T cd08898          72 FRWHPPAIDPGEDYSAEPSTLVEFTLEPIAG-GTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE  144 (145)
T ss_pred             EEecCCCcccccccCCCCceEEEEEEEecCC-cEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence            88643320   00 01122457888888764 699998866 4322111000 111234556677777887774

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.46  E-value=1.1e-05  Score=58.50  Aligned_cols=138  Identities=15%  Similarity=0.099  Sum_probs=78.0

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      ++.+.++++|+++||+++-  |.. ++.+|+.. --.+...+.|-.+|..-.+.+....|..-.+.=++..+++ .+.+.
T Consensus         2 l~i~r~~~ap~e~Vw~a~T--dpe-~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p-~~~l~   77 (142)
T cd07826           2 IVITREFDAPRELVFRAHT--DPE-LVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTP-PERIV   77 (142)
T ss_pred             EEEEEEECCCHHHHHHHhC--CHH-HHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcC-CCEEE
Confidence            5677889999999999998  764 46777743 1122223344344444444443211222234556777754 44555


Q ss_pred             EEEE-eCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651           84 TDVV-EGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        84 Y~il-eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~  151 (155)
                      |+.- ++..  .+.  ...++++.+.+ |+|.++.+..|...............+.-...+..|++||.
T Consensus        78 ~t~~~~~~~--~~~--s~v~~~l~~~~-~gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~  141 (142)
T cd07826          78 QTEEFEGLP--DGV--ALETVTFTELG-GRTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELLA  141 (142)
T ss_pred             EEeEecCCC--CCc--eEEEEEEEECC-CCEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            5542 2221  122  35688888875 57998887666422111000111245677788888888885

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.44  E-value=9.8e-06  Score=59.79  Aligned_cols=127  Identities=15%  Similarity=0.111  Sum_probs=80.5

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      +++.+++|++|+++||+++.  |+.+ ++.|.|..      ..+-.+|...++.+... + .....-++..+|+ ++.+.
T Consensus        12 ~i~~~~~i~Ap~e~Vw~alt--dp~~-~~~W~~~~------~~~~~~G~~~~~~~~~~-~-~~~~~~~v~e~~p-~~~l~   79 (157)
T cd08899          12 TLRFERLLPAPIEDVWAALT--DPER-LARWFAPG------TGDLRVGGRVEFVMDDE-E-GPNATGTILACEP-PRLLA   79 (157)
T ss_pred             EEEEEEecCCCHHHHHHHHc--CHHH-HHhhcCCC------CCCcccCceEEEEecCC-C-CCccceEEEEEcC-CcEEE
Confidence            57888899999999999999  8755 79999832      12224555555665431 1 1245677777754 46888


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhC
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN  153 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~  153 (155)
                      |+...++.    .  ...+++|++.+ ++|.++.+.++.+....  ..  ...+.-..+...|.+||-+.
T Consensus        80 ~~~~~~~~----~--~~~~~~l~~~~-~gT~v~~~~~~~~~~~~--~~--~~~~GW~~~L~~Lk~~~e~~  138 (157)
T cd08899          80 FTWGEGGG----E--SEVRFELAPEG-DGTRLTLTHRLLDERFG--AG--AVGAGWHLCLDVLEAALEGG  138 (157)
T ss_pred             EEecCCCC----C--ceEEEEEEEcC-CCEEEEEEEeccCchhh--hh--hhcccHHHHHHHHHHHHcCC
Confidence            88754431    1  25677788765 57888888777643311  11  12355556667777776554

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.33  E-value=2e-05  Score=56.74  Aligned_cols=134  Identities=14%  Similarity=0.133  Sum_probs=76.7

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhc-CC-cceEEEEcCCCCCceEEEEEe-cCCCCCcceEEEEEEEEeCCCCe
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DT-VEEIEVVEGDGGVGTILHIKF-KPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~-P~-v~s~e~~eGdg~~GsvR~~~~-~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      ++.+..+++|+++||+++.  |.. .+.+|+ |. +.... .+.+..+|..-.+.+ .++ |..-...=++.++ +.++.
T Consensus         2 l~~~r~i~ap~e~Vw~a~t--~p~-~l~~W~~p~~~~~~~-~~~d~~~GG~~~~~~~~~~-g~~~~~~g~v~e~-~p~~~   75 (139)
T cd08894           2 IVTTRVIDAPRDLVFAAWT--DPE-HLAQWWGPEGFTNTT-HEFDLRPGGRWRFVMHGPD-GTDYPNRIVFLEI-EPPER   75 (139)
T ss_pred             EEEEEEeCCCHHHHHHHhC--CHH-HHhhccCcCCCcceE-EEEEecCCCEEEEEEECCC-CCEecceEEEEEE-cCCCE
Confidence            5778889999999999998  764 467776 44 43222 223323343333333 222 2211234467778 45667


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~  151 (155)
                      +.|+.-.++    +.  ...++++.|.+ ++|.++.+..|...............+....++..|++||.
T Consensus        76 l~~t~~~~~----~~--~~v~~~~~~~~-~gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~  138 (139)
T cd08894          76 IVYDHGSGP----PR--FRLTVTFEEQG-GKTRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYLA  138 (139)
T ss_pred             EEEEeccCC----Cc--EEEEEEEEECC-CCEEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence            888874332    22  35788888876 67998888665321110000001234556677888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.26  E-value=0.00015  Score=52.55  Aligned_cols=136  Identities=8%  Similarity=-0.074  Sum_probs=77.4

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcC-C-cceEEEEcCCCCCceEEEE--EecCC-----CCCcceEEEEEEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYD-T-VEEIEVVEGDGGVGTILHI--KFKPG-----TPGFAGYKEKFIE   74 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P-~-v~s~e~~eGdg~~GsvR~~--~~~~g-----~~~~~~~kErl~~   74 (155)
                      +++.+..|+||+++||+++.  |... +.+|.+ . +.. .+.+.+-.+|-.-.+  ++..+     .+....+.=++..
T Consensus         1 ~~~~~r~i~ap~e~Vw~a~t--d~~~-~~~W~~p~~~~~-~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~   76 (146)
T cd08895           1 TDRLHRVIAAPPERVYRAFL--DPDA-LAKWLPPDGMTG-TVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLE   76 (146)
T ss_pred             CEEEEEEECCCHHHHHHHHc--CHHH-HhhcCCCCCeEe-EEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEE
Confidence            46788889999999999998  7754 678774 3 322 112233223333223  22220     0111234456777


Q ss_pred             EeCCCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651           75 IDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        75 ~D~~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~  151 (155)
                      ++ .++.+.|+..-.+... + .....++.+++.+ ++|.++++...-+..    .......+.-..++..|++||-
T Consensus        77 v~-p~~~i~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~----~~~~~~~~GW~~~l~~L~~~le  145 (146)
T cd08895          77 LV-PNERIVYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSGIPDG----IPPEDCELGWQESLANLAALVE  145 (146)
T ss_pred             Ec-CCCEEEEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeCCCch----hhhhHHHHHHHHHHHHHHHHhc
Confidence            84 4556777653222211 2 2236788888876 568888887643211    1112346777777888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.24  E-value=0.00028  Score=50.86  Aligned_cols=137  Identities=12%  Similarity=-0.006  Sum_probs=77.1

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCC--cceEEEEcCCCCCceEEEEEec-CCCCCcceEEEEEEEEeCCCC
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT--VEEIEVVEGDGGVGTILHIKFK-PGTPGFAGYKEKFIEIDNKKR   80 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~--v~s~e~~eGdg~~GsvR~~~~~-~g~~~~~~~kErl~~~D~~~~   80 (155)
                      +++.+..+++|+++||+++.  |.. ++.+|+..  --.++..+.+-.+|..-.+.+. .+ +..-...=++.++| ..+
T Consensus         1 ~~~i~r~~~ap~e~Vw~a~t--dp~-~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~-g~~~~~~g~~~~~~-p~~   75 (143)
T cd08900           1 TFTLERTYPAPPERVFAAWS--DPA-ARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKG-GPEITVEARYHDIV-PDE   75 (143)
T ss_pred             CEEEEEEeCCCHHHHHHHhc--CHH-HHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCC-CCEEeeeEEEEEec-CCc
Confidence            35677889999999999998  764 47787732  1112223334334444334332 22 32223455677774 455


Q ss_pred             eEEEEEE--eCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651           81 VRVTDVV--EGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        81 ~~~Y~il--eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~  151 (155)
                      .+.|+..  .++.   +......++.+.+.+ |+|.++.+-.+-..++..  ......+.-..++..|++||.
T Consensus        76 ~l~~t~~~~~~~~---~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~~--~~~~~~~GW~~~l~~L~~~l~  142 (143)
T cd08900          76 RIVYTYTMHIGGT---LLSASLATVEFAPEG-GGTRLTLTEQGAFLDGDD--DPAGREQGTAALLDNLAAELE  142 (143)
T ss_pred             eEEEEEeeccCCc---cccceEEEEEEEECC-CCEEEEEEEEEecccccc--hhhhHHHHHHHHHHHHHHHHh
Confidence            6666643  2222   111234688888875 568888876653222211  111235666677788888774

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.23  E-value=6.7e-05  Score=52.91  Aligned_cols=133  Identities=16%  Similarity=0.050  Sum_probs=75.6

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      +++.++.|+||+++||+++.  |..+ ++.|.+...    .+++-.+|..-.+.....  ....+.=++.+++ .++.++
T Consensus         1 ~~~~~~~i~ap~e~Vw~~~t--d~~~-~~~W~~~~~----~~~~~~~G~~~~~~~~~~--~~~~~~~~v~~~~-~~~~l~   70 (136)
T cd08893           1 KFVYVTYIRATPEKVWQALT--DPEF-TRQYWGGTT----VESDWKVGSAFEYRRGDD--GTVDVEGEVLESD-PPRRLV   70 (136)
T ss_pred             CeEEEEEecCCHHHHHHHHc--Cchh-hhheecccc----cccCCcCCCeEEEEeCCC--cccccceEEEEec-CCCeEE
Confidence            57899999999999999998  8755 789987611    123323344333443321  1113455677675 566677


Q ss_pred             EEEEeCCcc-CcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHH
Q 031651           84 TDVVEGGYL-DVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYL  150 (155)
Q Consensus        84 Y~ileg~~~-~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l  150 (155)
                      |+...+... ..+-.....++.+.+.++ +|.++.+.+-.+.+.   .......+....+++.|.+||
T Consensus        71 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~~---~~~~~~~~gw~~~l~~Lk~~~  134 (136)
T cd08893          71 HTWRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPGS---PTLEGVSGGWPAILSSLKTLL  134 (136)
T ss_pred             EEEecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCch---hHHHhhhcCHHHHHHHHHHHh
Confidence            776433221 001223467788888654 677666654432211   011123455666777777776

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.20  E-value=0.00014  Score=51.98  Aligned_cols=128  Identities=17%  Similarity=0.223  Sum_probs=75.9

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCC---cceEEEEcCCCCCceEEEEEec-CCCCCcceEEEEEEEEeCCC
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT---VEEIEVVEGDGGVGTILHIKFK-PGTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~---v~s~e~~eGdg~~GsvR~~~~~-~g~~~~~~~kErl~~~D~~~   79 (155)
                      |++.++.++||+++||+++.  |.. .+.+|++.   ..... .+.|-.+|..-.+.+. .+.+....+.=++..+ +..
T Consensus         1 ~~~~~~~~~ap~e~Vw~a~t--d~e-~~~~W~~~~~~~~~~~-~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei-~p~   75 (133)
T cd08897           1 KITVETTVDAPIEKVWEAWT--TPE-HITKWNFASDDWHCPS-AENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEV-EPH   75 (133)
T ss_pred             CEEEEEEeCCCHHHHHHHhC--CHH-HHhhCCCCCCCcccce-eeecCCcCCEEEEEEEcCCCCcccccceEEEEE-CCC
Confidence            57889999999999999998  764 57888643   11111 2233234444334332 2201111244566667 567


Q ss_pred             CeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651           80 RVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        80 ~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~  151 (155)
                      +.+.|+...+         ...++.+.+.+ ++|.++-+  +.+.+..   ......+.-..++..|++||-
T Consensus        76 ~~l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~~---~~~~~~~GW~~~l~~L~~~le  132 (133)
T cd08897          76 KLIEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENEN---PVEMQRQGWQAILDNFKKYVE  132 (133)
T ss_pred             CEEEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCCC---cHHHHHHHHHHHHHHHHHHhh
Confidence            7888886321         14688888875 56887754  4433221   111245666778888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=98.17  E-value=0.00038  Score=52.72  Aligned_cols=141  Identities=8%  Similarity=-0.049  Sum_probs=81.8

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCC--CcceEEEEEEEEeCCCCe
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTP--GFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~--~~~~~kErl~~~D~~~~~   81 (155)
                      .+..+.+|++||+++|+++.  |... .|+|.|.+.++++++..+.--.+-.+.+...-+  .-..+..+-...+.++..
T Consensus        42 ~~k~~~~i~~s~e~v~~vi~--d~e~-~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~  118 (195)
T cd08876          42 EFKAVAEVDASIEAFLALLR--DTES-YPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS  118 (195)
T ss_pred             EEEEEEEEeCCHHHHHHHHh--hhHh-HHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence            45667789999999999998  8865 799999999999988653212222233322101  011222221222222344


Q ss_pred             EEEEEEeCCc---cCc---CceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHH
Q 031651           82 RVTDVVEGGY---LDV---GFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNY  149 (155)
Q Consensus        82 ~~Y~ileg~~---~~~---~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~  149 (155)
                      +...+...+.   ...   ....+.+...++|.++++|.++....+++.+.  .|...   .....+.++++++.+.
T Consensus       119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~--iP~~lv~~~~~~~~~~~l~~l~~~  193 (195)
T cd08876         119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS--IPGWLANAFAKDAPYNTLENLRKQ  193 (195)
T ss_pred             EEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444433321   000   14567778888998888899999999998754  33322   1234444555555543

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.17  E-value=0.0001  Score=53.48  Aligned_cols=138  Identities=14%  Similarity=0.107  Sum_probs=73.4

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcC-C-cceEEEEcCCCCCceEEEEEe-cCCCCCcceEEEEEEEEeCCCCe
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYD-T-VEEIEVVEGDGGVGTILHIKF-KPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P-~-v~s~e~~eGdg~~GsvR~~~~-~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      ++.+..++||+++||+++-  |.. ++.+|++ . .. +...+.+-.+|..=.+.+ .++ |..-.+.=++..+|+. +.
T Consensus         2 l~i~r~i~a~~e~Vw~a~t--~pe-~~~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~-g~~~~~~g~v~~i~p~-~~   75 (146)
T cd08896           2 LVLSRTIDAPRELVWRAWT--EPE-LLKQWFCPKPWT-TEVAELDLRPGGAFRTVMRGPD-GEEFPNPGCFLEVVPG-ER   75 (146)
T ss_pred             eEEEEEeCCCHHHHHHHcC--CHH-HHhccCCCCCcc-ceEEEEEeecCcEEEEEEECCC-CCEecceEEEEEEeCC-CE
Confidence            5678889999999999998  664 4667764 2 22 111122212233323333 222 3222345678888554 45


Q ss_pred             EEEE--EEeC-CccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651           82 RVTD--VVEG-GYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        82 ~~Y~--ileg-~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~  151 (155)
                      +.|+  +-++ ++...+.  -..++++++.+ ++|.++.+..+........-......+.-..++..|++||.
T Consensus        76 l~~t~~~~~~~~~~~~~~--~~v~~~~~~~~-~gT~Ltl~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~  145 (146)
T cd08896          76 LVFTDALTPGWRPAEKPF--MTAIITFEDEG-GGTRYTARARHWTEADRKQHEEMGFHDGWGTAADQLAALAE  145 (146)
T ss_pred             EEEEEeecCCcCCCCCCc--EEEEEEEEecC-CcEEEEEEEEeCCHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            5555  3222 1111122  35678888865 57888876554321110000001124667778888888875

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=98.04  E-value=0.0003  Score=51.18  Aligned_cols=132  Identities=11%  Similarity=-0.024  Sum_probs=72.4

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhc-CCc-------ceEEEEcCCCCC-ceEEEEEecCCCCCcceEEEEEEEE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DTV-------EEIEVVEGDGGV-GTILHIKFKPGTPGFAGYKEKFIEI   75 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~-P~v-------~s~e~~eGdg~~-GsvR~~~~~~g~~~~~~~kErl~~~   75 (155)
                      ++++++|+||+++||+++.  |   .+.+|. |.-       ..|++ +-  .+ |..+ +...+|  . ....=++.++
T Consensus         2 ~~~~~~i~Ap~e~Vw~a~t--~---~l~~W~~p~~~~~~~~~~~~~~-d~--~~GG~~~-~~~~~g--~-~~~~g~v~~v   69 (149)
T cd08891           2 VRKSVTVPAPPERAFEVFT--E---GFGAWWPPEYHFVFSPGAEVVF-EP--RAGGRWY-EIGEDG--T-ECEWGTVLAW   69 (149)
T ss_pred             eEEEEEecCCHHHHHHHHH--h---chhhccCCCcccccCCCccEEE-cc--cCCcEEE-EecCCC--c-EeceEEEEEE
Confidence            6789999999999999997  6   255665 331       33442 11  23 3333 222222  1 2234567777


Q ss_pred             eCCCCeEEEEEE-eC--CccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc---ccCCchhhHHHHHHHHHHHHHH
Q 031651           76 DNKKRVRVTDVV-EG--GYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA---AANASFVSIDTVAKIAEISKNY  149 (155)
Q Consensus        76 D~~~~~~~Y~il-eg--~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~---~~~~~~~~~~~~~~~~k~~e~~  149 (155)
                      + ..+.++|+-. ..  .....+.+  ..++++++.++++|.++.+-........   .........+.-..++..|++|
T Consensus        70 ~-p~~~l~~tw~~~~~~~~~~~~~t--~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~  146 (149)
T cd08891          70 E-PPSRLVFTWQINADWRPDPDKAS--EVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAA  146 (149)
T ss_pred             c-CCCEEEEEeccCCCcCcCCCCce--EEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHH
Confidence            4 4556666653 11  11111122  5788888876457988887776543221   0000111234555677777777


Q ss_pred             Hh
Q 031651          150 LL  151 (155)
Q Consensus       150 l~  151 (155)
                      |-
T Consensus       147 l~  148 (149)
T cd08891         147 AE  148 (149)
T ss_pred             hc
Confidence            63

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.91  E-value=0.00026  Score=50.78  Aligned_cols=130  Identities=15%  Similarity=0.105  Sum_probs=73.8

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT   84 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   84 (155)
                      ++.++.++||+++||+++.  |.. .+.+|.+.-.+.++..|    |.+ .+.+... ++  .+.=++..+ +..+.+.|
T Consensus         2 ~~~~~~i~ap~e~Vw~a~t--~p~-~l~~W~~~~~~~~~~~G----g~~-~~~~~~~-~~--~~~g~~~~~-~p~~~l~~   69 (136)
T cd08901           2 AKTAMLIRRPVAEVFEAFV--DPE-ITTKFWFTGSSGRLEEG----KTV-TWDWEMY-GA--SVPVNVLEI-EPNKRIVI   69 (136)
T ss_pred             eeEEEEecCCHHHHHHHhc--CHH-HhccccccCCCccccCC----CEE-EEEEEcc-CC--ceEEEEEEE-cCCCEEEE
Confidence            5788999999999999998  664 46776543223333222    333 3555432 21  234466777 55677888


Q ss_pred             EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCccc-CCchhhHHHHHHHHHHHHHHHhh
Q 031651           85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAA-NASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~-~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                      +.-.++    +.+  ..++++.+.++|+|.++-+-..-+....+. .......+.-..++..|++||..
T Consensus        70 ~w~~~~----~~s--~v~~~l~~~~~ggT~ltl~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~  132 (136)
T cd08901          70 EWGDPG----EPT--TVEWTFEELDDGRTFVTITESGFPGTDDEGLKQALGSTEGWTLVLAGLKAYLEH  132 (136)
T ss_pred             EecCCC----CCE--EEEEEEEECCCCcEEEEEEECCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            764322    233  468888887656788776644332211000 00001124455666777777753

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.0012  Score=48.41  Aligned_cols=138  Identities=12%  Similarity=0.094  Sum_probs=72.5

Q ss_pred             cceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            2 KGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         2 ~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      ...+..+..|++|+++||+++.  |. .++.+|+. -..++ .+.--+.+....+....+  +.-...-++.++ ..++.
T Consensus         7 ~~~~~~er~i~aP~e~Vf~A~T--dp-e~l~~W~~-~~~~~-~d~r~gg~~~~~~~~~~g--~~~~~~~~~~~v-~p~~r   78 (149)
T COG3832           7 DRTLEIERLIDAPPEKVFEALT--DP-ELLARWFM-PGGAE-FDARTGGGERVRFRGPDG--PVHSFEGEYLEV-VPPER   78 (149)
T ss_pred             CceEEEEEeecCCHHHHHHHhc--CH-HHHHhhcC-CCCCc-cceecCCceEEeeecCCC--CeeecceEEEEE-cCCcE
Confidence            3467888889999999999998  66 46889886 22111 011101122333444333  222455677777 44555


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccC----CchhhHHHHHHHHHHHHHHHh
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAAN----ASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~----~~~~~~~~~~~~~k~~e~~l~  151 (155)
                      |.|+-.-.+.-. +...-..++++++..+|+   +++..........+.    ......+.-..++..++++|.
T Consensus        79 Iv~tw~~~~~~~-~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~  148 (149)
T COG3832          79 IVFTWDFDEDGE-PFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE  148 (149)
T ss_pred             EEEEeccCCCCC-cccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence            555554433211 222236688888876653   222222222211011    111125667777888877764

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=97.68  E-value=0.0031  Score=44.69  Aligned_cols=99  Identities=18%  Similarity=0.172  Sum_probs=58.3

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT   84 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   84 (155)
                      ++.+..++||+++||+++-  |.. .+.+|+....+.+...|    |..+   +.+|     .+.=++.+++ .++.++|
T Consensus         2 i~~~r~i~ap~e~Vw~A~T--~~e-~l~~W~~~~~~~d~~~G----G~~~---~~~g-----~~~g~~~~i~-p~~~l~~   65 (126)
T cd08892           2 ISLTETFQVPAEELYEALT--DEE-RVQAFTRSPAKVDAKVG----GKFS---LFGG-----NITGEFVELV-PGKKIVQ   65 (126)
T ss_pred             eEEEEEECCCHHHHHHHHC--CHH-HHHhhcCCCceecCCCC----CEEE---EeCC-----ceEEEEEEEc-CCCEEEE
Confidence            6778899999999999998  664 47788754444443222    3443   3333     2444677775 4555555


Q ss_pred             EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEE
Q 031651           85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYE  122 (155)
Q Consensus        85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~  122 (155)
                      +---.+.-..+.  -..++.+.+. +++|.++.+-...
T Consensus        66 ~w~~~~~~~~~~--s~v~~~l~~~-~~gT~ltl~~~g~  100 (126)
T cd08892          66 KWRFKSWPEGHY--STVTLTFTEK-DDETELKLTQTGV  100 (126)
T ss_pred             EEEcCCCCCCCc--EEEEEEEEEC-CCCEEEEEEEECC
Confidence            543222110022  2567778886 4568777665544

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=97.65  E-value=0.00035  Score=51.30  Aligned_cols=111  Identities=13%  Similarity=0.200  Sum_probs=80.1

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      +++++.-++-+|+++|+++.  |-.. .|+.+|.-...++.+.++ ...+-.++.+-. +--++..=|.. +++..++|.
T Consensus         3 ~~~~s~lv~y~a~~mF~LV~--dV~~-YP~FlP~C~~s~v~~~~~-~~l~A~l~V~~k-~i~e~F~Trv~-~~~~~~~I~   76 (146)
T COG2867           3 QIERTALVPYSASQMFDLVN--DVES-YPEFLPWCSASRVLERNE-RELIAELDVGFK-GIRETFTTRVT-LKPTARSID   76 (146)
T ss_pred             eeEeeeeccCCHHHHHHHHH--HHHh-CchhccccccceEeccCc-ceeEEEEEEEhh-heeeeeeeeee-ecCchhhhh
Confidence            57788889999999999998  8765 799999966667677763 234555555433 21123344444 455555777


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE  125 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~  125 (155)
                      -++++|+     ++...++.++.|.++++|.|+..++|+...
T Consensus        77 ~~l~~GP-----Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s  113 (146)
T COG2867          77 MKLIDGP-----FKYLKGGWQFTPLSEDACKVEFFLDFEFKS  113 (146)
T ss_pred             hhhhcCC-----hhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence            7777764     555789999999877899999999999864

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=97.57  E-value=0.0045  Score=42.78  Aligned_cols=121  Identities=16%  Similarity=0.135  Sum_probs=66.8

Q ss_pred             cCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCc-eEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEEEEeC
Q 031651           12 NVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVG-TILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEG   89 (155)
Q Consensus        12 ~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~G-svR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~ileg   89 (155)
                      +||+++||+++.  +.. .+.+|.+. ....+.     .+| +.+... .+  ++.-...=++.++++ ++.+.|+.--+
T Consensus         1 ~ap~e~Vw~a~t--~~~-~~~~W~~~~~~~~~~-----~~Gg~~~~~~-~~--g~~~~~~~~v~~~~p-~~~i~~~~~~~   68 (124)
T PF08327_consen    1 DAPPERVWEALT--DPE-GLAQWFTTSEAEMDF-----RPGGSFRFMD-PD--GGEFGFDGTVLEVEP-PERIVFTWRMP   68 (124)
T ss_dssp             SSSHHHHHHHHH--SHH-HHHHHSEEEEEEEEC-----STTEEEEEEE-TT--SEEEEEEEEEEEEET-TTEEEEEEEEE
T ss_pred             CcCHHHHHHHHC--CHh-HHhhccCCCcceeee-----ecCCEEEEEe-cC--CCCceeeEEEEEEeC-CEEEEEEEEcc
Confidence            689999999998  664 47888322 333332     233 444412 32  222233435888855 44588886433


Q ss_pred             CccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHH
Q 031651           90 GYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYL  150 (155)
Q Consensus        90 ~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l  150 (155)
                      +..  +-.....++.|.+ .+++|.++-+.+=.+...  ..+ ......-..++..|.+||
T Consensus        69 ~~~--~~~~~~v~~~~~~-~~~~T~l~~~~~~~~~~~--~~~-~~~~~gw~~~l~~L~~~l  123 (124)
T PF08327_consen   69 DDP--DGPESRVTFEFEE-EGGGTRLTLTHSGFPDDD--EEE-EGMEQGWEQMLDRLKAYL  123 (124)
T ss_dssp             TSS--SCEEEEEEEEEEE-ETTEEEEEEEEEEEHSHH--HHH-HCHHHHHHHHHHHHHHHH
T ss_pred             CCC--CCCceEEEEEEEE-cCCcEEEEEEEEcCCccH--HHH-HHHHHHHHHHHHHHHHHh
Confidence            321  1223477888888 556788776652221111  001 014566667777777776

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=97.46  E-value=0.012  Score=43.17  Aligned_cols=122  Identities=15%  Similarity=0.157  Sum_probs=72.9

Q ss_pred             EEEEEEecCC-------hHhHhchhhccccccchhh-hcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEe
Q 031651            5 LSHELEVNVP-------AGQAWELYGTIKLVKLVEK-EYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEID   76 (155)
Q Consensus         5 ~~~~i~i~ap-------a~kvW~~~~~~d~~~~lp~-~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D   76 (155)
                      +++.++||-|       .+++|.-+- .-. . -|. ..|++.+|++++.++ .--.|.++|+..     .++|++..  
T Consensus         2 ~~~tvpIN~p~~~p~LTr~QlW~GL~-~ka-r-~p~~Fvp~i~~c~Vl~e~~-~~l~Rel~f~~~-----~v~e~vt~--   70 (141)
T cd08863           2 FEHTVPINDPGNIPTLTRAQLWRGLV-LRA-R-EPQLFVPGLDRCEVLSESG-TVLERELTFGPA-----KIRETVTL--   70 (141)
T ss_pred             ccEEEecCCCCCCCccCHHHHHhHHH-hhh-C-CchhcccccceEEEEecCC-CEEEEEEEECCc-----eEEEEEEe--
Confidence            3566666654       468998774 112 1 233 457899999998764 246799999875     79999885  


Q ss_pred             CCCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc-ccCCchhhHHHHHHHHHHHH
Q 031651           77 NKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA-AANASFVSIDTVAKIAEISK  147 (155)
Q Consensus        77 ~~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~-~~~~~~~~~~~~~~~~k~~e  147 (155)
                      .....+.|.+-.++.        +.++.++...+|.  .-.++.|+..... ..++...+.+...++++.-+
T Consensus        71 ~~~~~v~f~~~~~g~--------~l~~~iee~~~g~--L~lrf~ye~~~p~~~~~e~~~~~~~~~~a~~~a~  132 (141)
T cd08863          71 EPPSRVHFLQADAGG--------TLTNTIEEPEDGA--LYLRFVYETTLPEVAEEEAKAYQEIVKQAYKEAD  132 (141)
T ss_pred             cCCcEEEEEecCCCC--------eEEEEeccCCCCc--EEEEEEEEecCCCcCchHHHHHHHHHHHHHHHHH
Confidence            566778888765221        2355554444443  3445566654322 22333335566666665544

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=97.26  E-value=0.057  Score=42.87  Aligned_cols=143  Identities=13%  Similarity=-0.004  Sum_probs=85.9

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCC-CCceEEEEEecCC-CCCcce-EEEEEEE--EeCCC
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDG-GVGTILHIKFKPG-TPGFAG-YKEKFIE--IDNKK   79 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg-~~GsvR~~~~~~g-~~~~~~-~kErl~~--~D~~~   79 (155)
                      +..+.++++|++++|+++.  |..+ .++|.++..++++++.-+ ..+-++ +.+..- .-..+. +.-+-..  .+..+
T Consensus        79 fk~e~~vd~s~~~v~dlL~--D~~~-R~~WD~~~~e~evI~~id~d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~~~  154 (235)
T cd08873          79 FCVELKVQTCASDAFDLLS--DPFK-RPEWDPHGRSCEEVKRVGEDDGIYH-TTMPSLTSEKPNDFVLLVSRRKPATDGD  154 (235)
T ss_pred             EEEEEEecCCHHHHHHHHh--Ccch-hhhhhhcccEEEEEEEeCCCcEEEE-EEcCCCCCCCCceEEEEEEEEeccCCCC
Confidence            4567779999999999999  8866 799999999999987432 223233 333221 011122 2222221  22222


Q ss_pred             -CeEEEEEEe-------CCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC-cccCCchhhHHHHHHHHHHHHHHH
Q 031651           80 -RVRVTDVVE-------GGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE-AAANASFVSIDTVAKIAEISKNYL  150 (155)
Q Consensus        80 -~~~~Y~ile-------g~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~-~~~~~~~~~~~~~~~~~k~~e~~l  150 (155)
                       ..+..+-+.       .+..  ....+.+-..+.|.++|+|.++.....+|.-- .....--.+-..+...|+..++||
T Consensus       155 ~~~I~~~SV~h~~~Pp~kgyV--R~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (235)
T cd08873         155 PYKVAFRSVTLPRVPQTPGYS--RTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFL  232 (235)
T ss_pred             eEEEEEeeeecccCCCCCCeE--EEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHh
Confidence             233333333       1111  35677888889999888899998888777532 111121134566777888888988


Q ss_pred             hhC
Q 031651          151 LNN  153 (155)
Q Consensus       151 ~~~  153 (155)
                      ..|
T Consensus       233 ~~~  235 (235)
T cd08873         233 VTN  235 (235)
T ss_pred             ccC
Confidence            765

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=97.21  E-value=0.016  Score=41.60  Aligned_cols=122  Identities=13%  Similarity=0.132  Sum_probs=62.5

Q ss_pred             ecCChHhHhchhhccccccchhhh-cCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEEEEeC
Q 031651           11 VNVPAGQAWELYGTIKLVKLVEKE-YDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEG   89 (155)
Q Consensus        11 i~apa~kvW~~~~~~d~~~~lp~~-~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~ileg   89 (155)
                      ++||+++||+++-  |. .++.+| .+....+++..|    |..+.+   .+     .+.=+...+|+.+ .+.|+---.
T Consensus         1 f~ap~e~Vw~A~T--dp-~~l~~w~~~~~~~~d~~~G----G~f~~~---~~-----~~~G~~~ev~pp~-rlv~tw~~~   64 (132)
T PTZ00220          1 FYVPPEVLYNAFL--DA-YTLTRLSLGSPAEMDAKVG----GKFSLF---NG-----SVEGEFTELEKPK-KIVQKWRFR   64 (132)
T ss_pred             CCCCHHHHHHHHc--CH-HHHHHHhcCCCccccCCcC----CEEEEe---cC-----ceEEEEEEEcCCC-EEEEEEecC
Confidence            4799999999997  66 457777 432222222222    333332   22     2334667775544 444443212


Q ss_pred             CccCcCceEEEEEEEEEeeCCCceEEEEEEE-EEEcCCccc-CCchhhHHHHHH-HHHHHHHHH
Q 031651           90 GYLDVGFTLFRVIFEIIEKGSDSCIIKSTIE-YELREEAAA-NASFVSIDTVAK-IAEISKNYL  150 (155)
Q Consensus        90 ~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~-y~~~~~~~~-~~~~~~~~~~~~-~~k~~e~~l  150 (155)
                      +.....++  ..|+.+++.++|+|.++-+-. +......+. .......+.-.. ++..|++||
T Consensus        65 ~~~~~~~s--~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l  126 (132)
T PTZ00220         65 DWEEDVYS--KVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL  126 (132)
T ss_pred             CCCCCCce--EEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence            11111233  578888887666788877766 322111100 001112344445 577787776

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=97.19  E-value=0.038  Score=40.86  Aligned_cols=70  Identities=13%  Similarity=0.125  Sum_probs=41.3

Q ss_pred             EEEEEEecCChH--------hHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEe
Q 031651            5 LSHELEVNVPAG--------QAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEID   76 (155)
Q Consensus         5 ~~~~i~i~apa~--------kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D   76 (155)
                      +++.++||-|.+        ++|+-+.  .-..--..+.|++.+|++++.. +..-.|.++|+..     .++|++... 
T Consensus         2 ~~htvpIN~p~~~~~~LTr~QlW~GL~--~kar~p~~Fvp~i~~c~Vl~e~-~~~~~R~v~fg~~-----~v~E~v~~~-   72 (149)
T PF08982_consen    2 FEHTVPINPPGASLPVLTREQLWRGLV--LKARNPQLFVPGIDSCEVLSES-DTVLTREVTFGGA-----TVRERVTLY-   72 (149)
T ss_dssp             EEEEEE------------HHHHHHHHH--HHHH-GGGT-TT--EEEEEEE--SSEEEEEEEETTE-----EEEEEEEEE-
T ss_pred             ccEEEecCCCcccCCccCHHHHHHHHH--HHHhChhhCccccCeEEEEecC-CCeEEEEEEECCc-----EEEEEEEEe-
Confidence            566777766554        7998875  2222122356889999998766 4578999999443     799998853 


Q ss_pred             CCCCeEEE
Q 031651           77 NKKRVRVT   84 (155)
Q Consensus        77 ~~~~~~~Y   84 (155)
                       ..+.+.|
T Consensus        73 -~~~~V~f   79 (149)
T PF08982_consen   73 -PPERVDF   79 (149)
T ss_dssp             -TTTEEEE
T ss_pred             -CCcEEEE
Confidence             4557777

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=96.21  E-value=0.23  Score=38.49  Aligned_cols=117  Identities=8%  Similarity=0.002  Sum_probs=69.4

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCC-CCceEEEEEec-C--CCCCcce-EEEEEEEEeCCC
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDG-GVGTILHIKFK-P--GTPGFAG-YKEKFIEIDNKK   79 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg-~~GsvR~~~~~-~--g~~~~~~-~kErl~~~D~~~   79 (155)
                      +..+.++++|++++|+++.  |..+ .++|.++++++++++.-+ ...-++ +.+. +  ...+.+. +.-+ ....+.+
T Consensus        47 ~~ge~~v~as~~~v~~ll~--D~~~-r~~Wd~~~~~~~vl~~~~~d~~i~y-~~~~~Pwp~~~~~RDfV~l~-~~~~~~~  121 (205)
T cd08874          47 FLGAGVIKAPLATVWKAVK--DPRT-RFLYDTMIKTARIHKTFTEDICLVY-LVHETPLCLLKQPRDFCCLQ-VEAKEGE  121 (205)
T ss_pred             EEEEEEEcCCHHHHHHHHh--Ccch-hhhhHHhhhheeeeeecCCCeEEEE-EEecCCCCCCCCCCeEEEEE-EEEECCC
Confidence            3456789999999999999  8865 789999999999987543 222233 3322 1  1002222 2222 2233333


Q ss_pred             C-eEEEEEEeCCcc--C----cCceEEEEEEEEEee---CCCceEEEEEEEEEEcCC
Q 031651           80 R-VRVTDVVEGGYL--D----VGFTLFRVIFEIIEK---GSDSCIIKSTIEYELREE  126 (155)
Q Consensus        80 ~-~~~Y~ileg~~~--~----~~~~~y~~ti~v~~~---~~g~s~v~W~~~y~~~~~  126 (155)
                      . .+.-+-+.-+..  .    .....+.+-..++|.   ++|.|.++.....+|.++
T Consensus       122 ~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg  178 (205)
T cd08874         122 LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGP  178 (205)
T ss_pred             cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCC
Confidence            3 332222222111  0    024456667778887   667899999999998854

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=95.59  E-value=0.91  Score=36.13  Aligned_cols=143  Identities=14%  Similarity=-0.018  Sum_probs=77.5

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCC--CcceEEEE-EEEEeCCCC-
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTP--GFAGYKEK-FIEIDNKKR-   80 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~--~~~~~kEr-l~~~D~~~~-   80 (155)
                      +..+.++++|++++++++.  |..+ .++|.+++.++++++--+.--.+..++..+-.+  ..+.+.=+ -..-+.++. 
T Consensus        83 fK~e~~vd~s~e~v~~lL~--D~~~-r~~Wd~~~~e~~vIe~id~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~  159 (240)
T cd08913          83 FKVEMVVHVDAAQAFLLLS--DLRR-RPEWDKHYRSCELVQQVDEDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDNGD  159 (240)
T ss_pred             EEEEEEEcCCHHHHHHHHh--Chhh-hhhhHhhccEEEEEEecCCCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCCCc
Confidence            4566789999999999998  8866 799999999999986642111244444332101  11222111 111222222 


Q ss_pred             --eEEEEEEeCCcc--Cc---CceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch----hhHHHHHHHHHHHHHH
Q 031651           81 --VRVTDVVEGGYL--DV---GFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF----VSIDTVAKIAEISKNY  149 (155)
Q Consensus        81 --~~~Y~ileg~~~--~~---~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~----~~~~~~~~~~k~~e~~  149 (155)
                        .+..+.+.=+-.  ..   ...++.+-+.+.|.++|.|.+.+...-+|  + ..|...    .....+...+..-..+
T Consensus       160 ~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP--G-~LP~~~~N~~~~~~p~~~~~~~~~~~  236 (240)
T cd08913         160 PYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP--G-VLPYISTDIAGLSSEFYSTFSACSQF  236 (240)
T ss_pred             cEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC--c-cccHHHhhhhhhccchhHHHHHHHHH
Confidence              132333221111  00   24456677778888888899887665554  2 223111    1223444555666666


Q ss_pred             HhhC
Q 031651          150 LLNN  153 (155)
Q Consensus       150 l~~~  153 (155)
                      |.+|
T Consensus       237 ~~~~  240 (240)
T cd08913         237 LLDN  240 (240)
T ss_pred             hhcC
Confidence            6543

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=95.20  E-value=0.87  Score=33.59  Aligned_cols=108  Identities=19%  Similarity=0.281  Sum_probs=60.6

Q ss_pred             EEEEEecCChHhHhchhhccccccchhhh---cCC----cceEEEEcCCCCCceEEEE-EecC-CCC--------CcceE
Q 031651            6 SHELEVNVPAGQAWELYGTIKLVKLVEKE---YDT----VEEIEVVEGDGGVGTILHI-KFKP-GTP--------GFAGY   68 (155)
Q Consensus         6 ~~~i~i~apa~kvW~~~~~~d~~~~lp~~---~P~----v~s~e~~eGdg~~GsvR~~-~~~~-g~~--------~~~~~   68 (155)
                      ++++++++|+++||+++.  |..- +..-   +..    +.+++ .+|+|  -+++.- .+.. .++        +.-.+
T Consensus         2 ~~~~~~~~~~~~v~~~~~--d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v   75 (159)
T PF10698_consen    2 EHSVEYPAPVERVWAAFT--DEDY-WEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRV   75 (159)
T ss_pred             eEEEEcCCCHHHHHHHHc--CHHH-HHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEE
Confidence            578899999999999998  5422 2221   222    34444 23332  111111 1221 111        11122


Q ss_pred             E--EEEEEEeCCCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031651           69 K--EKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR  124 (155)
Q Consensus        69 k--Erl~~~D~~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~  124 (155)
                      +  |+-...++..++.+|++--.+.   |. +.++++.+.|.+ ++|.+.++++....
T Consensus        76 ~~~e~w~~~~~g~~~g~~~~~~~G~---P~-~~~G~~~L~~~~-~gt~~~~~g~v~v~  128 (159)
T PF10698_consen   76 TRTETWTPLDDGRRTGTFTVSIPGA---PV-SISGTMRLRPDG-GGTRLTVEGEVKVK  128 (159)
T ss_pred             EEEEEEecCCCCeEEEEEEEEecCc---eE-EEEEEEEEecCC-CCEEEEEEEEEEEE
Confidence            2  2232336677777777643222   33 368999999954 47999999988865

The function is not known.

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=95.02  E-value=1.2  Score=34.44  Aligned_cols=141  Identities=11%  Similarity=0.057  Sum_probs=73.9

Q ss_pred             EEEEEEecCChHhHh-chhhccccccchhhhcCCcceEEEEcCCCCCce-EEEEEecC-C--CCCcceEEEEEEEEeCCC
Q 031651            5 LSHELEVNVPAGQAW-ELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGT-ILHIKFKP-G--TPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         5 ~~~~i~i~apa~kvW-~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~Gs-vR~~~~~~-g--~~~~~~~kErl~~~D~~~   79 (155)
                      ...+.++++|+++++ .++-  |..+ .++|.+.+.++++++--+..=. ++.+..+. +  ..+-..+.-|....+..+
T Consensus        51 ~k~e~~i~~~~~~l~~~l~~--d~e~-~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~  127 (209)
T cd08905          51 FRLEVVVDQPLDNLYSELVD--RMEQ-MGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST  127 (209)
T ss_pred             EEEEEEecCCHHHHHHHHHh--chhh-hceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence            456778999999999 6654  6654 7999999888887755321111 22222211 0  000112222322233333


Q ss_pred             CeEEEEEEeCCccC--c---CceEEEEEEEEEeeCC--CceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHH
Q 031651           80 RVRVTDVVEGGYLD--V---GFTLFRVIFEIIEKGS--DSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNY  149 (155)
Q Consensus        80 ~~~~Y~ileg~~~~--~---~~~~y~~ti~v~~~~~--g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~  149 (155)
                      ..+.....+-+-+.  .   ....+.+-..+.|.++  +.|.++|.+..+|++.-  |...   .+.+.....++.|..+
T Consensus       128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i--P~~lvN~~~~~~~~~~~~~Lr~~  205 (209)
T cd08905         128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL--PKSIINQVLSQTQVDFANHLRQR  205 (209)
T ss_pred             EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC--CHHHHHHHhHHhHHHHHHHHHHH
Confidence            22211111111110  0   2344556667788754  68999999999998774  3211   1234444455555554


Q ss_pred             H
Q 031651          150 L  150 (155)
Q Consensus       150 l  150 (155)
                      +
T Consensus       206 ~  206 (209)
T cd08905         206 M  206 (209)
T ss_pred             H
Confidence            4

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=94.79  E-value=1.4  Score=35.02  Aligned_cols=117  Identities=16%  Similarity=-0.005  Sum_probs=66.5

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCC-CCCcceEEEEEEEE-eC-CC-
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPG-TPGFAGYKEKFIEI-DN-KK-   79 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g-~~~~~~~kErl~~~-D~-~~-   79 (155)
                      .+..+.++++|++++++++.  |..+ .++|.++..++++++.-+.---+..+.-.+= .-+.+.+.=+..-. .. .+ 
T Consensus        79 ~fk~e~~vdvs~~~l~~LL~--D~~~-r~~Wd~~~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~  155 (236)
T cd08914          79 SVWVEKHVKRPAHLAYRLLS--DFTK-RPLWDPHFLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKDGN  155 (236)
T ss_pred             EEEEEEEEcCCHHHHHHHHh--Chhh-hchhHHhhceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCCCC
Confidence            45667789999999999999  9866 7999999999998866321112555543221 01112221111111 12 22 


Q ss_pred             -CeEEEEEEeCC--ccCc---CceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651           80 -RVRVTDVVEGG--YLDV---GFTLFRVIFEIIEKGSDSCIIKSTIEYEL  123 (155)
Q Consensus        80 -~~~~Y~ileg~--~~~~---~~~~y~~ti~v~~~~~g~s~v~W~~~y~~  123 (155)
                       ..+.-.-+..+  +...   ....+..-..+.|.++++|.++....-+|
T Consensus       156 ~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~dP  205 (236)
T cd08914         156 TYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQISA  205 (236)
T ss_pred             EEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcCC
Confidence             22222222221  1000   23442333377888888899998888877

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=94.55  E-value=1.3  Score=32.44  Aligned_cols=120  Identities=18%  Similarity=0.060  Sum_probs=67.7

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCC-Cc-ceEEEEEEEEeCCCC-e
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTP-GF-AGYKEKFIEIDNKKR-V   81 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~-~~-~~~kErl~~~D~~~~-~   81 (155)
                      +..+.++++|++++|+++.  |.. ..++|-|.+.++++++-....-.+....+....+ .. ..+--+-...+.++. .
T Consensus        41 ~k~~~~i~~~~~~v~~~l~--d~~-~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~  117 (193)
T cd00177          41 LKAEGVIPASPEQVFELLM--DID-LRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYV  117 (193)
T ss_pred             EEEEEEECCCHHHHHHHHh--CCc-hhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEE
Confidence            4567789999999999998  754 4688998899999887653223444444432211 01 112222222233222 1


Q ss_pred             EEEEEEeCC--ccC-c--CceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031651           82 RVTDVVEGG--YLD-V--GFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA  127 (155)
Q Consensus        82 ~~Y~ileg~--~~~-~--~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~  127 (155)
                      +...=++.+  +.. .  ....+.+.+.+.|.++++|.+++....++.+..
T Consensus       118 ~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~i  168 (193)
T cd00177         118 IVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSI  168 (193)
T ss_pred             EEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCc
Confidence            222222221  100 0  112223446678887788999999999988653

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=93.25  E-value=3  Score=32.10  Aligned_cols=141  Identities=15%  Similarity=0.050  Sum_probs=72.0

Q ss_pred             EEEEEEecCChHhHhchhhcccccc-chhhhcCCcceEEEEcCCC-CCceEEEEEecCC----CCCcceEEE-EEEEEeC
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVK-LVEKEYDTVEEIEVVEGDG-GVGTILHIKFKPG----TPGFAGYKE-KFIEIDN   77 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~-~lp~~~P~v~s~e~~eGdg-~~GsvR~~~~~~g----~~~~~~~kE-rl~~~D~   77 (155)
                      +..+..++++++++++.+.  |..+ .-++|-+.+.+++++|--+ ...-++. ..+..    ..+-..+-- .....++
T Consensus        48 ~k~e~~i~~s~~~~~~~l~--d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d  124 (208)
T cd08903          48 YKGEGIVYATLEQVWDCLK--PAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYED  124 (208)
T ss_pred             EEEEEEecCCHHHHHHHHH--hccchhhhhhhhccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCC
Confidence            5567789999999999986  6543 2379999988888886642 2111222 22211    010012221 2222333


Q ss_pred             CCCeEEEEEEeCCcc--CcCce---E--EEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHH
Q 031651           78 KKRVRVTDVVEGGYL--DVGFT---L--FRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISK  147 (155)
Q Consensus        78 ~~~~~~Y~ileg~~~--~~~~~---~--y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e  147 (155)
                      ....+.+...+-+-.  ...|-   .  +-..++..|.++++|.++|.+..+|++.-  |...   ...+.....++.|.
T Consensus       125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~~~Lr  202 (208)
T cd08903         125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYL--PQTVVDSFFPASMAEFYNNLT  202 (208)
T ss_pred             ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCc--CHHHHHHHhhHHHHHHHHHHH
Confidence            333333333333211  00111   1  12233334445668999999999998764  3211   12234445555555


Q ss_pred             HHH
Q 031651          148 NYL  150 (155)
Q Consensus       148 ~~l  150 (155)
                      .++
T Consensus       203 ~~~  205 (208)
T cd08903         203 KAV  205 (208)
T ss_pred             HHH
Confidence            554

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=93.12  E-value=3.1  Score=31.93  Aligned_cols=141  Identities=13%  Similarity=0.072  Sum_probs=77.9

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEE------EEEeC
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKF------IEIDN   77 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl------~~~D~   77 (155)
                      .+..+.++++|++++.+++.  |. .+.++|.|...+.+.++..+..-.+-.+.+.-  +-+-.-||=+      +.++ 
T Consensus        47 ~~k~e~~i~~~~~~~~~vl~--d~-~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~~--PwPv~~RD~v~~~~~~~~~~-  120 (215)
T cd08877          47 SLRMEGEIDGPLFNLLALLN--EV-ELYKTWVPFCIRSKKVKQLGRADKVCYLRVDL--PWPLSNREAVFRGFGVDRLE-  120 (215)
T ss_pred             EEEEEEEecCChhHeEEEEe--hh-hhHhhhcccceeeEEEeecCCceEEEEEEEeC--ceEecceEEEEEEEEEeeec-
Confidence            35567779999999999998  77 56899999955555554432211222222211  1000112222      2232 


Q ss_pred             CCCeEEEEE--EeCC-----------ccC----cCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHH
Q 031651           78 KKRVRVTDV--VEGG-----------YLD----VGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSID  137 (155)
Q Consensus        78 ~~~~~~Y~i--leg~-----------~~~----~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~  137 (155)
                      ++..+...+  +..+           +..    .....+.+-+.++|.++++|.++..+..+|.+.. .|.-.   ..+.
T Consensus       121 ~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~-IP~~liN~~~k~  199 (215)
T cd08877         121 ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSL-VPKSLLNFVARK  199 (215)
T ss_pred             cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCccc-CCHHHHHHHHHH
Confidence            344332222  1110           000    0235566777888988888999999988887662 23211   2456


Q ss_pred             HHHHHHHHHHHHHh
Q 031651          138 TVAKIAEISKNYLL  151 (155)
Q Consensus       138 ~~~~~~k~~e~~l~  151 (155)
                      ..-.++..|...+.
T Consensus       200 ~~~~~~~~l~k~~~  213 (215)
T cd08877         200 FAGLLFEKIQKAAK  213 (215)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66667776665543

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=93.08  E-value=3.1  Score=31.78  Aligned_cols=144  Identities=9%  Similarity=-0.032  Sum_probs=75.6

Q ss_pred             EEEEEEecCChHhHhc-hhhccccccchhhhcCCcceEEEEcCCCCCceE-EEEEecCCCCC--c-ceEEEEEEEEeCCC
Q 031651            5 LSHELEVNVPAGQAWE-LYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTI-LHIKFKPGTPG--F-AGYKEKFIEIDNKK   79 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~-~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~Gsv-R~~~~~~g~~~--~-~~~kErl~~~D~~~   79 (155)
                      +..+..+++|+++++. ++.  |... .++|.+.+..+++++.-+.--.| ..+........  . ..+--|-...++..
T Consensus        50 ~k~~~~i~~~~~~v~~~l~~--d~~~-~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~  126 (208)
T cd08868          50 FRLTGVLDCPAEFLYNELVL--NVES-LPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENC  126 (208)
T ss_pred             EEEEEEEcCCHHHHHHHHHc--Cccc-cceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCe
Confidence            4557789999999986 454  6654 78999998888777654211111 21221111011  1 12222222233332


Q ss_pred             CeEEEEEEeCCcc--Cc---CceEEEEEEEEEeeCC--CceEEEEEEEEEEcCCcccCC-chhhHHHHHHHHHHHHHHHh
Q 031651           80 RVRVTDVVEGGYL--DV---GFTLFRVIFEIIEKGS--DSCIIKSTIEYELREEAAANA-SFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        80 ~~~~Y~ileg~~~--~~---~~~~y~~ti~v~~~~~--g~s~v~W~~~y~~~~~~~~~~-~~~~~~~~~~~~k~~e~~l~  151 (155)
                      ..+...-++=+-.  ..   ....+.+.+.+.|.++  ++|.++|....+|.+.-+.-- ...+.......++.|..++.
T Consensus       127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~  206 (208)
T cd08868         127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIA  206 (208)
T ss_pred             EEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHh
Confidence            2222222221110  00   1334456667788644  579999999999887642211 11234555566777777664

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=92.23  E-value=4.3  Score=31.34  Aligned_cols=118  Identities=11%  Similarity=0.052  Sum_probs=64.0

Q ss_pred             EEEEEEecCChHhHh-chhhccccccchhhhcCCcceEEEEcCCCCCce-EEEEEecCCCCC--c-ceEEEEEEEEeCCC
Q 031651            5 LSHELEVNVPAGQAW-ELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGT-ILHIKFKPGTPG--F-AGYKEKFIEIDNKK   79 (155)
Q Consensus         5 ~~~~i~i~apa~kvW-~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~Gs-vR~~~~~~g~~~--~-~~~kErl~~~D~~~   79 (155)
                      +..+.++++|++++| .++.  |..+ .++|.+++.++++++--+.-=. ++.++.+-..++  . ..+.-|--.-+..+
T Consensus        51 fk~~~~v~~~~~~l~~~ll~--D~~~-~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~  127 (209)
T cd08906          51 FILKAFMQCPAELVYQEVIL--QPEK-MVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDR  127 (209)
T ss_pred             EEEEEEEcCCHHHHHHHHHh--Chhh-ccccCccchhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCCc
Confidence            466778999999998 5777  8866 7999999999988865421111 122222211011  1 12333333233333


Q ss_pred             C-eEEEEEEeCCccCcCceEE-EEE-----EEEEe--eCCCceEEEEEEEEEEcCCc
Q 031651           80 R-VRVTDVVEGGYLDVGFTLF-RVI-----FEIIE--KGSDSCIIKSTIEYELREEA  127 (155)
Q Consensus        80 ~-~~~Y~ileg~~~~~~~~~y-~~t-----i~v~~--~~~g~s~v~W~~~y~~~~~~  127 (155)
                      . .+..++.-.. .. +.+.| ++.     +-+.+  .++++|.++|....+|++.-
T Consensus       128 ~i~~~~sv~~~~-~P-~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~l  182 (209)
T cd08906         128 YVSAGISTTHSH-KP-PLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRL  182 (209)
T ss_pred             EEEEEEEEecCC-CC-CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCC
Confidence            2 2223332211 11 12222 233     22344  45668999999999998864

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=91.80  E-value=4.7  Score=30.89  Aligned_cols=141  Identities=13%  Similarity=-0.026  Sum_probs=75.0

Q ss_pred             EEEEEEe-cCChHhHhchhhccccccchhhhcCCcceEEEEcCCCC--CceEEEEE-ecCCCCCcceEEEEEEEEe-CCC
Q 031651            5 LSHELEV-NVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGG--VGTILHIK-FKPGTPGFAGYKEKFIEID-NKK   79 (155)
Q Consensus         5 ~~~~i~i-~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~--~GsvR~~~-~~~g~~~~~~~kErl~~~D-~~~   79 (155)
                      +....++ ++|++.+++++.  |.. ..++|.+.+.++++++-++.  .--++... ++-...+=..+--|-.-.| +..
T Consensus        52 ~k~~~~~~~~s~~~~~~~l~--D~~-~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~  128 (209)
T cd08870          52 YLVRGVFEDCTPELLRDFYW--DDE-YRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRS  128 (209)
T ss_pred             EEEEEEEcCCCHHHHHHHHc--Chh-hHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCE
Confidence            4455567 679999999998  875 47899999777777766532  22222211 1110000013333333233 222


Q ss_pred             CeEEEEEEeCCcc----CcCceEEEEEEEEEee--CCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHH
Q 031651           80 RVRVTDVVEGGYL----DVGFTLFRVIFEIIEK--GSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYL  150 (155)
Q Consensus        80 ~~~~Y~ileg~~~----~~~~~~y~~ti~v~~~--~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l  150 (155)
                      ..+..+-+.-+..    ...+..|.+...+.|.  ++++|.+..+..-+|.+.  .|.-.   ......-+.++.|...+
T Consensus       129 ~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--IP~wlvN~~~~~~~~~~l~~l~~a~  206 (209)
T cd08870         129 YVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--IPRELAKLAVKRGMPGFLKKLENAL  206 (209)
T ss_pred             EEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--CCHHHHHHHHHhhhHHHHHHHHHHH
Confidence            2222222221110    1146778888889997  667788888877776444  33211   12333445555555544

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=89.99  E-value=7.4  Score=29.99  Aligned_cols=119  Identities=8%  Similarity=-0.062  Sum_probs=63.7

Q ss_pred             EEEEEEe-cCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecC--CCCCcceEEEEEEEEeCCCC-
Q 031651            5 LSHELEV-NVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKP--GTPGFAGYKEKFIEIDNKKR-   80 (155)
Q Consensus         5 ~~~~i~i-~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~--g~~~~~~~kErl~~~D~~~~-   80 (155)
                      +..+.++ ++|++.+++++.  |.. ..++|-+.+..+++++.-+.--.+-...+..  ...+-..+--|.. .+.++. 
T Consensus        49 ~k~~~~~~~~s~e~~~~~l~--D~~-~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~-~~~~~~~  124 (222)
T cd08871          49 IKVSAIFPDVPAETLYDVLH--DPE-YRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSW-LEFGGEY  124 (222)
T ss_pred             EEEEEEeCCCCHHHHHHHHH--Chh-hhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEE-EeCCCEE
Confidence            3345555 799999999998  864 4789999977777775532212332333221  1111112222222 222222 


Q ss_pred             eE-EEEEEeCC-ccCc---CceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031651           81 VR-VTDVVEGG-YLDV---GFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA  127 (155)
Q Consensus        81 ~~-~Y~ileg~-~~~~---~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~  127 (155)
                      .+ ..++.-.. +...   ....+.+.+.+.|.++++|.++|....++.+..
T Consensus       125 vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~I  176 (222)
T cd08871         125 IIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSL  176 (222)
T ss_pred             EEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCc
Confidence            11 11211011 1111   123455666788887778999999999987753

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=89.80  E-value=6.3  Score=28.88  Aligned_cols=114  Identities=13%  Similarity=0.243  Sum_probs=69.5

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEec---CCCCCcceEEEEEEE--EeC
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFK---PGTPGFAGYKEKFIE--IDN   77 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~---~g~~~~~~~kErl~~--~D~   77 (155)
                      |+..+...|++|.+-||+..+..|  . +..+.|-.+ +-+-+|+ .++..-.+++.   -+.+.--.-+-|+++  .| 
T Consensus         2 ~tF~~~~~i~aP~E~VWafhsrpd--~-lq~LTppw~-VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d-   75 (153)
T COG4276           2 GTFVYRTTITAPHEMVWAFHSRPD--A-LQRLTPPWI-VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFD-   75 (153)
T ss_pred             cceEEeeEecCCHHHHhhhhcCcc--H-HHhcCCCcE-EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccC-
Confidence            577888999999999999998443  3 556667633 2223443 22222233322   121211234455554  53 


Q ss_pred             CCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651           78 KKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE  126 (155)
Q Consensus        78 ~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~  126 (155)
                      ....++=..+.|+.   +.-+.+-+-++.+.++ +|++.=.+.|+...+
T Consensus        76 ~~~~FtDv~i~gPf---p~~~WrHtH~F~~egg-~TvliD~Vsye~p~g  120 (153)
T COG4276          76 NGSRFTDVCITGPF---PALNWRHTHNFVDEGG-GTVLIDSVSYELPAG  120 (153)
T ss_pred             CcceeeeeeecCCc---cceeeEEEeeeecCCC-cEEEEeeEEeeccCc
Confidence            44566666777765   3436888999988764 688888999997654

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=87.54  E-value=11  Score=28.73  Aligned_cols=118  Identities=15%  Similarity=0.012  Sum_probs=67.2

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecC-CCCCcc-eEEEEEEEEeCCCC--
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKP-GTPGFA-GYKEKFIEIDNKKR--   80 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~-g~~~~~-~~kErl~~~D~~~~--   80 (155)
                      +..+.+++++++++++.+-  |.   -++|-+++.++++++--+.-=.|-...+.. .....+ .+--|.-..+.++.  
T Consensus        46 ~K~~~~v~a~~~~v~~~l~--d~---r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~  120 (197)
T cd08869          46 WRASTEVEAPPEEVLQRIL--RE---RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC  120 (197)
T ss_pred             EEEEEEeCCCHHHHHHHHH--HH---HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence            4677889999999999875  54   378999988888876542111111122211 101122 23333333333332  


Q ss_pred             eEEEEEEeC--CccCc--CceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031651           81 VRVTDVVEG--GYLDV--GFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA  127 (155)
Q Consensus        81 ~~~Y~ileg--~~~~~--~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~  127 (155)
                      .+...-++-  .+...  ....+.+-+-++|.++++|.+++.+..+|.+.-
T Consensus       121 ~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~i  171 (197)
T cd08869         121 VLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRS  171 (197)
T ss_pred             EEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCC
Confidence            222222321  11000  134455667788988888999999999998764

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=87.28  E-value=11  Score=28.80  Aligned_cols=117  Identities=15%  Similarity=-0.007  Sum_probs=65.4

Q ss_pred             EEEEEEe-cCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCce-EEEEEecCC--CCCcceEEEEEEEEeCCCC
Q 031651            5 LSHELEV-NVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGT-ILHIKFKPG--TPGFAGYKEKFIEIDNKKR   80 (155)
Q Consensus         5 ~~~~i~i-~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~Gs-vR~~~~~~g--~~~~~~~kErl~~~D~~~~   80 (155)
                      +..+.++ ++|++.+.+++.  |.. ..++|.+.+.++++++.+...++ +-.+.+.-.  ..+=..+-.|-...|+++.
T Consensus        47 ~k~~~~~~d~s~~~~~~~~~--D~~-~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~  123 (207)
T cd08911          47 YKVYGSFDDVTARDFLNVQL--DLE-YRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENK  123 (207)
T ss_pred             EEEEEEEcCCCHHHHHHHHh--CHH-HHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCC
Confidence            3344445 999999999998  875 47899999888888876422222 112221110  0000245555555666654


Q ss_pred             eE---EEEEEe-CCccC---cCceEEEEEEEEEee---CCCceEEEEEEEEEEc
Q 031651           81 VR---VTDVVE-GGYLD---VGFTLFRVIFEIIEK---GSDSCIIKSTIEYELR  124 (155)
Q Consensus        81 ~~---~Y~ile-g~~~~---~~~~~y~~ti~v~~~---~~g~s~v~W~~~y~~~  124 (155)
                      .+   .+++-. .-+..   -.+.+|.+...+.|.   ++++|.+.++..-+|.
T Consensus       124 ~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg  177 (207)
T cd08911         124 LIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG  177 (207)
T ss_pred             EEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC
Confidence            42   222211 10100   146778888888886   3457777765544443

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins

Probab=84.11  E-value=16  Score=27.71  Aligned_cols=139  Identities=9%  Similarity=-0.071  Sum_probs=71.7

Q ss_pred             eEEEEEEecCChHhHhchhhccc--cccchhhhcCCcceEEEEcCCCCCceEEEEEecC-C--CC--CcceE--EEEEEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIK--LVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKP-G--TP--GFAGY--KEKFIE   74 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d--~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~-g--~~--~~~~~--kErl~~   74 (155)
                      .+..+.+++++++++.+.+.  |  .. ..++|-+.+..+++++.-+.  ....+.+.. .  .+  ..+.+  .+....
T Consensus        47 ~~k~~~~i~~~~~~v~~~l~--d~~~~-~r~~Wd~~~~~~~~le~id~--~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~  121 (206)
T cd08867          47 LYRAEGIVDALPEKVIDVII--PPCGG-LRLKWDKSLKHYEVLEKISE--DLCVGRTITPSAAMGLISPRDFVDLVYVKR  121 (206)
T ss_pred             EEEEEEEEcCCHHHHHHHHH--hcCcc-ccccccccccceEEEEEeCC--CeEEEEEEccccccCccCCcceEEEEEEEE
Confidence            36677889999999999987  6  33 36789988889888876432  122222211 1  01  01111  121122


Q ss_pred             EeCCCCeEEEEEEeCCccCcCceE-EEEE-----EEEEeeC--CCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHH
Q 031651           75 IDNKKRVRVTDVVEGGYLDVGFTL-FRVI-----FEIIEKG--SDSCIIKSTIEYELREEAAANASF---VSIDTVAKIA  143 (155)
Q Consensus        75 ~D~~~~~~~Y~ileg~~~~~~~~~-y~~t-----i~v~~~~--~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~  143 (155)
                      +++....+...-++=+... +.+. .++.     +-+.|.+  +++|.++|.+..+|++.-  |.-.   .+.......+
T Consensus       122 ~~~~~~~i~~~Sv~hp~~p-~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~  198 (206)
T cd08867         122 YEDNQWSSSGKSVDIPERP-PTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI--PQSLVESAMPSNLVNFY  198 (206)
T ss_pred             eCCCeEEEEEEeccCCCCC-CCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC--cHHHHHhhhhhhHHHHH
Confidence            3332222222223211110 1111 2233     3355543  457999999999998764  3211   1334444555


Q ss_pred             HHHHHHH
Q 031651          144 EISKNYL  150 (155)
Q Consensus       144 k~~e~~l  150 (155)
                      +.|..++
T Consensus       199 ~~lr~~~  205 (206)
T cd08867         199 TDLVKGV  205 (206)
T ss_pred             HHHHHhc
Confidence            5555543

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=84.11  E-value=15  Score=27.42  Aligned_cols=143  Identities=13%  Similarity=-0.074  Sum_probs=77.6

Q ss_pred             EEEEEEecCChHhHh-chhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCc---ceEEEEEEEEe-CCC
Q 031651            5 LSHELEVNVPAGQAW-ELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGF---AGYKEKFIEID-NKK   79 (155)
Q Consensus         5 ~~~~i~i~apa~kvW-~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~---~~~kErl~~~D-~~~   79 (155)
                      +..+..++++++++. .++.  |... .++|.+.+.++++++-...-..+..+.....-++.   ..+--|-...+ +..
T Consensus        47 ~k~~~~v~~~~~~~~~~~~~--d~~~-r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~  123 (206)
T smart00234       47 SRAVGVVPMVCADLVEELMD--DLRY-RPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGS  123 (206)
T ss_pred             EEEEEEEecChHHHHHHHHh--cccc-hhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCc
Confidence            455667999999855 5665  7644 78999998888877653211344444332110011   12212211122 222


Q ss_pred             CeEEEEEEeCCcc---C--cCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHHh
Q 031651           80 RVRVTDVVEGGYL---D--VGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        80 ~~~~Y~ileg~~~---~--~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l~  151 (155)
                      ..+...-++.+-.   .  .....+.+.+.+.|.+++.|.++|....++.+.-  |.-.   .+......+++.+-++|.
T Consensus       124 ~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i--P~~lvn~~~~~~~~~~~~~~~~~~~  201 (206)
T smart00234      124 YAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL--PHWLVRSLIKSGLAEFAKTWVATLQ  201 (206)
T ss_pred             EEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc--cceeehhhhhhhHHHHHHHHHHHHH
Confidence            3333322222211   0  0234567778888988878999999999988753  2211   234555555666655554


Q ss_pred             h
Q 031651          152 N  152 (155)
Q Consensus       152 ~  152 (155)
                      .
T Consensus       202 ~  202 (206)
T smart00234      202 K  202 (206)
T ss_pred             H
Confidence            3

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=80.59  E-value=24  Score=27.28  Aligned_cols=117  Identities=10%  Similarity=-0.055  Sum_probs=67.2

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEec----CCCCCcceEEEEEEEEeCCC
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFK----PGTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~----~g~~~~~~~kErl~~~D~~~   79 (155)
                      .+..+++++++++++...+-  |.   .++|.+++.+.++++.-+.  ....+.+.    -....-..+.-|.-..|..+
T Consensus        53 ~~r~~~~i~a~~~~vl~~ll--d~---~~~Wd~~~~e~~vIe~ld~--~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~  125 (204)
T cd08908          53 LWRTTIEVPAAPEEILKRLL--KE---QHLWDVDLLDSKVIEILDS--QTEIYQYVQNSMAPHPARDYVVLRTWRTNLPK  125 (204)
T ss_pred             EEEEEEEeCCCHHHHHHHHH--hh---HHHHHHHhhheEeeEecCC--CceEEEEEccCCCCCCCcEEEEEEEEEEeCCC
Confidence            45678899999999999986  54   5788888666666655321  11222221    11111123344344444444


Q ss_pred             CeEEEEEEeCCccCcC-----ceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031651           80 RVRVTDVVEGGYLDVG-----FTLFRVIFEIIEKGSDSCIIKSTIEYELREEA  127 (155)
Q Consensus        80 ~~~~Y~ileg~~~~~~-----~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~  127 (155)
                      ..+.-.+....+-..|     ...+.+..-++|.++|+|.++..+..+|.+..
T Consensus       126 g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~i  178 (204)
T cd08908         126 GACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHM  178 (204)
T ss_pred             CeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCC
Confidence            4443333211111112     33445556678988889999999999987763

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
2vne_A	201	The X-Ray Structure Of Norcoclaurine Synthase From		3e-13

>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From Thalictrum Flavum Length = 201

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 5   LSHELEVNVPAGQAWELYGTIKLVKLVEKEYXXXXXXXXXXXXXXXXXXLHIKFKPGTPG 64
           + HELEV   A   W +Y    L K +                      L   F PG   
Sbjct: 31  IHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEIIGDGGVGTILDXTFVPGE-- 88
Query: 65  FAG-YKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL 123
           F   YKEKFI +DN+ R++    +EGGYLD+G T +     ++  G DSC+IKS+ EY +
Sbjct: 89  FPHEYKEKFILVDNEHRLKKVQXIEGGYLDLGVTYYXDTIHVVPTGKDSCVIKSSTEYHV 148
Query: 124 REE 126
           + E
Sbjct: 149 KPE 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	5e-32
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	7e-28
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	7e-22
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	1e-21
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	5e-21
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	3e-20
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	3e-19
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	5e-19
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	5e-19
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	8e-19
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	8e-19
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	2e-15
2le1_A	151	Uncharacterized protein; structural genomics, nort	2e-06

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score =  112 bits (280), Expect = 5e-32
 Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 2/156 (1%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKP 60
           +   + HELEV   A   W +Y    L K +        E   + GDGGVGTIL + F P
Sbjct: 27  VTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEIIGDGGVGTILDMTFVP 86

Query: 61  GTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIE 120
           G      YKEKFI +DN+ R++   ++EGGYLD+G T +     ++  G DSC+IKS+ E
Sbjct: 87  GEF-PHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTE 145

Query: 121 YELREEAAA-NASFVSIDTVAKIAEISKNYLLNNRD 155
           Y ++ E        ++   +A +A+     +L ++ 
Sbjct: 146 YHVKPEFVKIVEPLITTGPLAAMADAISKLVLEHKS 181

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score =  100 bits (250), Expect = 7e-28
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 4/155 (2%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DTVEEIEVVEGDGGVGTILHIKFK 59
           M  + + + E++V     W +      + +V K     V++++++EGDGGVGTIL   F 
Sbjct: 1   MVKEFNTQTELSVRLEALWAVLSK-DFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFL 59

Query: 60  PGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI 119
           P     +  +E+  E D         V+EGGYL  G + ++  F++ E   D  ++   I
Sbjct: 60  PEVS-PSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKI 118

Query: 120 EYELREEAAANASFVSI-DTVAKIAEISKNYLLNN 153
            Y+   +     +      +        + YL N 
Sbjct: 119 SYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLSNG 153

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score = 85.0 bits (210), Expect = 7e-22
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 8/156 (5%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DTVEEIEVVEGDGG-VGTILHIKF 58
           + G+L  ++E+   A +   ++        V K     ++  ++ EGD G VG+I+   +
Sbjct: 15  LVGKLETDVEIKASADKFHHMF--AGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNY 72

Query: 59  KPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGS-DSCIIKS 117
                     KE+   ++  K +    V+EG  +   +  F +  ++  K      I+  
Sbjct: 73  VHDGE-AKVAKERIEAVEPDKNLITFRVIEGDLMK-EYKSFLLTIQVTPKPGGPGSIVHW 130

Query: 118 TIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN 153
            +EYE   E  A+     +    ++++    +LL  
Sbjct: 131 HLEYEKISEEVAHPE-TLLQFCVEVSKEIDEHLLAE 165

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score = 84.3 bits (208), Expect = 1e-21
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 7/155 (4%)

Query: 5   LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTP 63
              E    +P  + ++ +  +    LV K     ++  E++EGDGG GTI  I F  G+ 
Sbjct: 5   YESEFTSEIPPPRLFKAF-VLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQ 63

Query: 64  GFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL 123
            +   K K   ID +       ++EG  L           +++   S   IIKST  Y  
Sbjct: 64  -YGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHT 122

Query: 124 REEAAANASFVSIDTVAKIAEISK---NYLLNNRD 155
           +         V      K + + K    YL  + D
Sbjct: 123 KGNVEIKEEHVK-AGKEKASNLFKLIETYLKGHPD 156

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score = 82.7 bits (204), Expect = 5e-21
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 5/154 (3%)

Query: 5   LSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DTVEEIEVVEGDGGVGTILHIKFKPGTP 63
              E    +PA + ++ +  +    L  K     +  +E +EG+GG GTI  I F  G P
Sbjct: 5   YETEATSVIPAARLFKAF-ILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFP 63

Query: 64  GFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL 123
            F   K++  E+D+        V+EGG +           +I+   +   I+K   +Y  
Sbjct: 64  -FKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHT 122

Query: 124 REEAAANASFV--SIDTVAKIAEISKNYLLNNRD 155
           + +    A  +  S +    +    ++YLL + D
Sbjct: 123 KGDHEVKAEQIKASKEMGETLLRAVESYLLAHSD 156

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score = 80.8 bits (199), Expect = 3e-20
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 3/152 (1%)

Query: 5   LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPG 64
             +E    V   + ++   T    ++V K  + ++ +E+VEG+GG GTI  I        
Sbjct: 5   FENEQSSTVAPAKLYKAL-TKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGH- 62

Query: 65  FAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR 124
            +    K   ID         ++ G  LD          +I+       I K  +++  +
Sbjct: 63  TSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTK 122

Query: 125 EEAAANASFVSI-DTVAKIAEISKNYLLNNRD 155
            +  +             + +  + Y+L + D
Sbjct: 123 GDVLSETVRDQAKFKGLGLFKAIEGYVLAHPD 154

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score = 78.2 bits (192), Expect = 3e-19
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 6/154 (3%)

Query: 5   LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPG 64
              E    +   + ++         ++ K  +T++ +E+VEG+GG GTI  + F  G   
Sbjct: 6   FQDEYTSTIAPAKLYKAL-VTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGE- 63

Query: 65  FAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR 124
                 K   ID         +V G  L           +++E  +   I K TI+ E +
Sbjct: 64  SKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETK 123

Query: 125 EEAAANASFVSIDTVAKIAEISK---NYLLNNRD 155
            +A  N         A+     K   +YL  + D
Sbjct: 124 GDAQPNEEEGK-AAKARGDAFFKAIESYLSAHPD 156

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score = 77.4 bits (190), Expect = 8e-19
 Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 10/156 (6%)

Query: 5   LSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DTVEEIEVVEGDGGVGTILHIKFKPGTP 63
           +  E E  +   + ++    ++  +++ K      +  E++EGDGGVGT+  I F  G P
Sbjct: 12  IVKEEESPIAPHRLFKAL-VLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHP 70

Query: 64  GFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEI-IEKGSDSCIIKSTIEYE 122
                  KF EID         + EG  L     + +V++E+ +E        K T+ Y 
Sbjct: 71  -LTYMLHKFDEIDAANFYCKYTLFEGDVL--RDNIEKVVYEVKLEAVGGGSKGKITVTYH 127

Query: 123 LREEAAANASFVSIDTVAKIAEISK---NYLLNNRD 155
            +     N   V      K  E  K    YL  N +
Sbjct: 128 PKPGCTVNEEEVK-IGEKKAYEFYKQVEEYLAANPE 162

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score = 77.0 bits (189), Expect = 8e-19
 Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 6/154 (3%)

Query: 5   LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPG 64
              E   +V   + ++   T     + +K    ++ IE+VEG+GGVGTI  I    G   
Sbjct: 5   FRDETSSSVAPAKLYKAL-TKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDK- 62

Query: 65  FAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR 124
            +   +K   ID         +V G  L           +++       I K T+++  +
Sbjct: 63  TSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTK 122

Query: 125 EEAAANASFVSIDTVAKIAEISK---NYLLNNRD 155
            +A  + +    D +AK A   K    Y+L N  
Sbjct: 123 GDAPLSDAVRD-DALAKGAGFFKAIEGYVLANPA 155

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score = 69.0 bits (168), Expect = 2e-15
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 10  EVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYK 69
            ++ PA   W L       +  +     V+   ++ GDG VG++  +    G P  +   
Sbjct: 42  RIHAPASVVWPLIRRFDNPERYK---HFVKRCRLISGDGDVGSVREVTVISGLPA-STST 97

Query: 70  EKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYE 122
           E+   +D+  RV    VV G   +     ++ +  + E  +       T+  E
Sbjct: 98  ERLEFVDDDHRVLSFRVVGG---EHRLKNYKSVTSVNEFLNQDSGKVYTVVLE 147

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 25/140 (17%), Positives = 41/140 (29%), Gaps = 11/140 (7%)

Query: 3   GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGG-VGTILHIKFKPG 61
             L   +EV  PA   W L G    +    + +  V    +        G          
Sbjct: 2   ATLRRSVEVAAPAADVWTLVGDFSAIH---RWHPQVSAPTLRGASPHTPGAERVFGAGTE 58

Query: 62  TPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEY 121
                   E+ +E D   R  V  + +        T  R + E++ +    C +  T  +
Sbjct: 59  EE----LVERLVERDESARRLVYTMPDP---PFPITNHRAVLEVVPRDDRHCTVVWTAMF 111

Query: 122 ELREEAAANASFVSIDTVAK 141
           +   E A     V  D V  
Sbjct: 112 DCSPETARELESVIGDGVFA 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	100.0
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	100.0
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	100.0
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	100.0
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	100.0
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	100.0
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	100.0
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	100.0
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	100.0
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	100.0
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	100.0
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	100.0
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	99.97
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	99.97
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	99.97
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	99.97
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.97
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.97
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	99.97
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.96
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	99.96
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	99.95
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.94
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.73
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.71
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.62
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.62
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.62
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.41
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.37
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.36
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.27
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	99.15
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	99.03
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	98.88
2leq_A	146	Uncharacterized protein; start domains, structural	98.84
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	98.84
2il5_A	171	Hypothetical protein; structural genomics, APC2365	98.82
2lcg_A	142	Uncharacterized protein; start domain, structural	98.79
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.72
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.63
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	98.62
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	98.6
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	98.58
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.53
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.53
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	98.51
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.49
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	98.49
3put_A	166	Hypothetical conserved protein; structural genomic	98.48
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.46
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.43
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.43
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.36
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	98.35
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	98.31
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	98.23
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	98.21
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	98.18
3qsz_A	189	STAR-related lipid transfer protein; structural ge	98.05
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	98.01
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	97.89
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	97.88
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	97.82
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	97.72
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	97.38
2lio_A	136	Uncharacterized protein; structural genomics, nort	97.32
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	97.07
2luz_A	192	CALU16; structural genomics, northeast structural	96.94
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	95.19
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	94.42
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	94.3
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	91.02
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	86.97
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	86.83
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	85.09

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=100.00  E-value=2.1e-45  Score=273.41  Aligned_cols=149  Identities=23%  Similarity=0.330  Sum_probs=137.1

Q ss_pred             eEEEEEEecCChHhHhchh-hccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            4 QLSHELEVNVPAGQAWELY-GTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~-~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      +++.++++++||++||+++ +  ||++++|+|+|+ |++|+++||+|++||||.|+|.+| ++.+.+||||+.+|+++|+
T Consensus         4 ~~~~ei~i~a~a~kvw~~~~~--d~~~l~pk~~P~~i~s~e~~eGdgg~Gsir~~~~~~g-~~~~~~kErl~~iD~~~~~   80 (159)
T 4a8u_A            4 NYETEATSVIPAARLFKAFIL--DGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEG-FPFKYVKDRVDEVDHTNFK   80 (159)
T ss_dssp             EEEEEEEESSCHHHHHHHHTT--THHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTT-SSCSEEEEEEEEEETTTTE
T ss_pred             EEEEEEEecCCHHHHHHHHhc--CccccchhhCchhccEEEEEcCCCCCceEEEEEEecC-CCccEEEEEEEEEccccCE
Confidence            6788999999999999998 7  999989999998 999999999999999999999988 6778999999999999999


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch--hhHHHHHHHHHHHHHHHhhCCC
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF--VSIDTVAKIAEISKNYLLNNRD  155 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~--~~~~~~~~~~k~~e~~l~~~~~  155 (155)
                      |+|+++||+++..+|++|+++++|.|.++|||+++|+++|++.++..++++.  .+++.+.+|+|++|+||++|||
T Consensus        81 ~~y~iiegd~l~~~~~~y~~ti~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~k~~~~~~~~~~k~ie~yll~np~  156 (159)
T 4a8u_A           81 YSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSD  156 (159)
T ss_dssp             EEEEEEEETTCBTTEEEEEEEEEEEECTTSCEEEEEEEEEEESSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEEEEeeCCCCccceEEEEEEEEEEECCCCceEEEEEEEEEECCCCcCCHHHHHHHHHHHHHHHHHHHHHHhhChh
Confidence            9999999998866799999999999998889999999999999987555543  2589999999999999999997

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=100.00  E-value=6.4e-45  Score=272.24  Aligned_cols=150  Identities=20%  Similarity=0.223  Sum_probs=137.1

Q ss_pred             cceEEEEEEecCChHhHhchh-hccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCC
Q 031651            2 KGQLSHELEVNVPAGQAWELY-GTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         2 ~~~~~~~i~i~apa~kvW~~~-~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~   79 (155)
                      +++++.++++++||++||+++ +  ||++++|+|+|+ |++|+++||+|++||||.|+|.+| ++.+++||||+.+|+++
T Consensus         9 ~~~~~~ev~i~a~a~kvw~~~v~--d~~~l~pk~~P~~v~s~e~~eGdg~~Gsir~~~~~~g-~~~~~~kErl~~iD~~~   85 (165)
T 3ie5_A            9 AYTIVKEEESPIAPHRLFKALVL--ERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDG-HPLTYMLHKFDEIDAAN   85 (165)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHTT--THHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECTT-SSCCEEEEEEEEEEGGG
T ss_pred             eEEEEEEEEecCCHHHHHHHhcC--CccccchhhCCcccceEEEecCCCCCCeEEEEEecCC-CCCceEEEEEEEEchhc
Confidence            478999999999999999995 7  999988999998 999999999999999999999988 67789999999999999


Q ss_pred             CeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch--hhHHHHHHHHHHHHHHHhhCCC
Q 031651           80 RVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF--VSIDTVAKIAEISKNYLLNNRD  155 (155)
Q Consensus        80 ~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~--~~~~~~~~~~k~~e~~l~~~~~  155 (155)
                      |+|+|+++||+++..+|++|+++++|. .++|||+++|+++|+++++..++++.  .+++.+..|+|++|+||++|||
T Consensus        86 ~~~~Y~iieG~~l~~~~~~y~~~i~v~-~~~ggs~vkwt~~y~~~~~~~~~~e~~k~~~~~~~~~~K~ie~yllanp~  162 (165)
T 3ie5_A           86 FYCKYTLFEGDVLRDNIEKVVYEVKLE-AVGGGSKGKITVTYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPE  162 (165)
T ss_dssp             TEEEEEEEEEGGGTTTEEEEEEEEEEE-EETTEEEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CEEEEEEecCCCCccceEEEEEEEEEE-eCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence            999999999998755799999999999 66789999999999999987555443  2589999999999999999997

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=100.00  E-value=3.8e-44  Score=265.47  Aligned_cols=150  Identities=25%  Similarity=0.460  Sum_probs=130.3

Q ss_pred             CcceEEEEEEecCChHhHhch-hhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCC
Q 031651            1 MKGQLSHELEVNVPAGQAWEL-YGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNK   78 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~-~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~   78 (155)
                      |.++++.++++++||++||++ ++  ||++++|+|+|+ +++|+++||+|++||||.|+|.+|.++ +.+||||+.+|++
T Consensus         1 M~~~~~~e~~i~a~a~kvw~~~v~--d~~~l~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~g~~~-~~~kErl~~iD~~   77 (155)
T 2flh_A            1 MVKEFNTQTELSVRLEALWAVLSK--DFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSP-SYQREEITEFDES   77 (155)
T ss_dssp             CCEEEEEEEEESSCHHHHHHHHHT--SCTTHHHHHCTTTEEEEEEEECSSSTTCEEEEEECTTSSS-CEEEEEEEEEETT
T ss_pred             CCcEEEEEEEecCCHHHHHHHHhc--ccccccchhccccceEEEEEcCCCCCCeEEEEEeeCCCCC-cEEEEEEEEEeCC
Confidence            778999999999999999999 68  999988999999 999999999999999999999876223 7999999999999


Q ss_pred             CCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhH--HHHHHHHHHHHHHHhhCC
Q 031651           79 KRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSI--DTVAKIAEISKNYLLNNR  154 (155)
Q Consensus        79 ~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~--~~~~~~~k~~e~~l~~~~  154 (155)
                      +|+|+|+++||+++..+|++|+++++|.|.++|||+++|+++|++.++..+ ++..++  +.+..|+|+||+||+++|
T Consensus        78 ~~~~~y~iieg~~l~~~~~~~~~~i~v~p~~~ggs~v~wt~~y~~~~~~~~-~~~~~~~~~~~~~~~k~ie~yll~~~  154 (155)
T 2flh_A           78 SHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEE-KVTPTKTSQSTLMYLRRLERYLSNGS  154 (155)
T ss_dssp             TTEEEEEEEEEGGGGTTCSEEEEEEEEEEEETTEEEEEEEEEEEC--------CCHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCEEEEEEEeccccccCceEEEEEEEEEECCCCCEEEEEEEEEEECCCCcc-ChhHhhhHHHHHHHHHHHHHHHhhCC
Confidence            999999999999876689999999999999888999999999999987644 555678  999999999999999997

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=100.00  E-value=3.6e-44  Score=275.50  Aligned_cols=153  Identities=35%  Similarity=0.658  Sum_probs=140.4

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~   79 (155)
                      |+|+++.+++|++||++||+++..+||++++|+|+|+ +++|+++ |+|++||||.|+|.+| ++.+++||||+.+|+++
T Consensus        27 ~~g~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-GdGg~GsIR~lt~~~G-~~~~~vkErle~iDde~  104 (201)
T 2vq5_A           27 VTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDGGVGTILDMTFVPG-EFPHEYKEKFILVDNEH  104 (201)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SSSSTTCEEEEECCTT-CSSCEEEEEEEEEETTT
T ss_pred             cceEEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cCCCCCeEEEEEecCC-CcccEEEEEEEEEchhh
Confidence            5789999999999999999997323898988999999 8999999 9999999999999988 66789999999999999


Q ss_pred             CeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc-ccCCchhhHHHHHHHHHHHHHHHhhCCC
Q 031651           80 RVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA-AANASFVSIDTVAKIAEISKNYLLNNRD  155 (155)
Q Consensus        80 ~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~-~~~~~~~~~~~~~~~~k~~e~~l~~~~~  155 (155)
                      |+|+|+++||+++..+|++|+++++|.|.++|||+++|+++|++.++. +++++..+++.+.+++|++|+||++|||
T Consensus       105 ~~~sYsiieGd~l~~~~~~y~~tikv~p~~dggs~vkWt~~ye~~~~~~~~~e~~~~~~~~~~~~KaiE~yLlanp~  181 (201)
T 2vq5_A          105 RLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVKPEFVKIVEPLITTGPLAAMADAISKLVLEHKS  181 (201)
T ss_dssp             TEEEEEEEEEGGGGTTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGHHHHTTTCCSHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEEEEecCccccceeEEEEEEEEEECCCCCeEEEEEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHHhCcc
Confidence            999999999998766899999999999998889999999999999876 4455556789999999999999999996

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=100.00  E-value=1.2e-43  Score=262.63  Aligned_cols=149  Identities=17%  Similarity=0.236  Sum_probs=135.5

Q ss_pred             cceEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCC
Q 031651            2 KGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKR   80 (155)
Q Consensus         2 ~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~   80 (155)
                      .++++.|+++++||+|+|+++ +.|+++|+|+|+|+ +++++ ++|||++||||.|+|..| ++.+++||||+.+|+++|
T Consensus         3 v~~~~~E~~~~v~a~kl~ka~-v~d~~~l~Pk~~P~~iks~~-veGdg~~Gsir~~t~~~g-~~~~~~kErle~iD~~~~   79 (154)
T 2wql_A            3 AQSHSLEITSSVSAEKIFSGI-VLDVDTVIPKAATGAYKSVE-VKGDGGAGTVRIITLPEG-SPITTMTVRTDAVNKEAL   79 (154)
T ss_dssp             CCEEEEEEEESSCHHHHHHHH-TTTHHHHHHHHSTTTCSEEE-EESSSSTTCEEEEECCTT-CSCCEEEEEEEEEETTTT
T ss_pred             CeEEEEEEEecCCHHHHHHHH-hhcccccchhhcccceeEEE-EECCCCCCeEEEEEEcCC-CCceEEEEEEEEEehhhC
Confidence            468899999999999999876 45999999999999 99999 689999999999999988 778899999999999999


Q ss_pred             eEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch--hhHHHHHHHHHHHHHHHhhC
Q 031651           81 VRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF--VSIDTVAKIAEISKNYLLNN  153 (155)
Q Consensus        81 ~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~--~~~~~~~~~~k~~e~~l~~~  153 (155)
                      +|+|+++||+++..+|++|+++++|.|.++|||+++|+++|++++++.++++.  ..++.+.++||++|+||++|
T Consensus        80 ~~~y~iieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~t~~Y~~~~~~~~~ee~~~~~~~~~~~~~KaiEayLlan  154 (154)
T 2wql_A           80 SYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN  154 (154)
T ss_dssp             EEEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEeccccccceEEEEEEEEEeeCCCCcEEEEEEEEEEECCCCCCCHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            99999999998877999999999999999999999999999999987555543  24566899999999999998

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=100.00  E-value=3.4e-42  Score=255.70  Aligned_cols=152  Identities=22%  Similarity=0.341  Sum_probs=136.5

Q ss_pred             cceEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCC
Q 031651            2 KGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKR   80 (155)
Q Consensus         2 ~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~   80 (155)
                      .++++.+++|++||++||++++ .|+++++|+|+|+ |++|+++||+|++||||.|+|.+| .+.+++||||+.+|+++|
T Consensus         2 ~~~~~~e~~i~ap~~~vw~~~~-~d~~~~~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~G-~~~~~~kErl~~~D~~~~   79 (159)
T 1e09_A            2 VFTYESEFTSEIPPPRLFKAFV-LDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEG-SQYGYVKHKIDSIDKENY   79 (159)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHT-TTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCS-SSCEEEEEEEEEEETTTT
T ss_pred             cEEEEEEEEecCCHHHHHHHHh-cCccccchhhChhhccEEEEEeCCCCCceEEEEEecCC-CCceEEEEEEEEEcCCCC
Confidence            3688999999999999999983 4888889999997 999999999999999999999977 555799999999999999


Q ss_pred             eEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch--hhHHHHHHHHHHHHHHHhhCCC
Q 031651           81 VRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF--VSIDTVAKIAEISKNYLLNNRD  155 (155)
Q Consensus        81 ~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~--~~~~~~~~~~k~~e~~l~~~~~  155 (155)
                      +|+|+++||+++..+|++|+++++|.|.++|||+++|+++|++.++..+++..  ..++.+.+|+|+||+||++|||
T Consensus        80 ~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~~~  156 (159)
T 1e09_A           80 SYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPD  156 (159)
T ss_dssp             EEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEEEEEEecccCcccceEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence            99999999998876899999999999998888999999999999876444322  2489999999999999999996

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=100.00  E-value=8.1e-42  Score=253.26  Aligned_cols=152  Identities=20%  Similarity=0.233  Sum_probs=135.1

Q ss_pred             cceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            2 KGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         2 ~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      .++++.+++|++||++||++++ .||++++|+|+|.|++|+++||+|++||||.|+|.+| .+.+++||||+.+|+++|+
T Consensus         2 ~~~~~~e~~i~a~a~kvw~~~~-~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~~G-~~~~~~kErl~~~D~~~~~   79 (157)
T 1tw0_A            2 VFVFRDETSSSVAPAKLYKALT-KDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEG-DKTSFVLQKVDAIDEANLG   79 (157)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHH-HTGGGGGGGSCSSEEEEEEEESSSSTTCEEEEEEEET-TEEEEEEEEEEEEETTTTE
T ss_pred             cEEEEEEEEecCCHHHHHHHHh-cCcchhhhhHHhhccEEEEEeCCCCCCeEEEEEeeCC-CccceEEEEEEEEeccCCE
Confidence            3688999999999999999984 4888889999966999999999999999999999977 5567899999999999999


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch--hhHHHHHHHHHHHHHHHhhCCC
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF--VSIDTVAKIAEISKNYLLNNRD  155 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~--~~~~~~~~~~k~~e~~l~~~~~  155 (155)
                      ++|+++||+++...|++|+++++|.|.++|||+++|+++|++.++..+++..  ..++.+.+|+|+||+||++|||
T Consensus        80 ~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p~  155 (157)
T 1tw0_A           80 YDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPA  155 (157)
T ss_dssp             EEEEEEECTTSCTTEEEEEEEEEEEECSSSSEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             EEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999999998754699999999999998888999999999999876444322  2388999999999999999996

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=100.00  E-value=9e-42  Score=252.45  Aligned_cols=151  Identities=17%  Similarity=0.195  Sum_probs=134.8

Q ss_pred             cceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            2 KGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         2 ~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      .++++.+++|++||++||++++ .||++++|+|+|.|++|+++||+|++||||.|+|.+| .+.+++||||+.+|+++|+
T Consensus         2 ~~~~~~e~~i~a~a~kvw~~~~-~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~~G-~~~~~~kErl~~~D~~~~~   79 (155)
T 1icx_A            2 IFAFENEQSSTVAPAKLYKALT-KDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHD-GHTSFVLHKLDAIDEANLT   79 (155)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHT-TTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEESS-SSEEEEEEEEEEEEGGGTE
T ss_pred             cEEEEEEEEecCCHHHHHHHHh-cCcchhcchhhhhccEEEEEecCCCCCeEEEEEEecC-CcceeEEEEEEEEeccCCE
Confidence            3688999999999999999983 5888889999966999999999999999999999977 5567899999999999999


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch--hhHHHHHHHHHHHHHHHhhCCC
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF--VSIDTVAKIAEISKNYLLNNRD  155 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~--~~~~~~~~~~k~~e~~l~~~~~  155 (155)
                      |+|+++||+++...|++|+++++|.|.++|||+++|+++|++.++. +++..  ..++.+.+|+|+|++||++|||
T Consensus        80 ~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~-~~~~~~~~~~~~~~~~~k~ie~yll~~p~  154 (155)
T 1icx_A           80 YNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDV-LSETVRDQAKFKGLGLFKAIEGYVLAHPD  154 (155)
T ss_dssp             EEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSS-CCHHHHTTHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999998754699999999999988778999999999999886 33321  2489999999999999999997

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=100.00  E-value=1.2e-41  Score=252.54  Aligned_cols=151  Identities=21%  Similarity=0.234  Sum_probs=135.1

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      ++++.+++|++||++||++++ .||++++|+|+|.|++|+++||+|++||||.|+|.+| ++.+++||||+.+|+++|++
T Consensus         4 ~~~~~e~~i~a~a~kvw~~~~-~d~~~~~pk~~~~i~s~~i~eGdgg~Gsir~~~~~~g-~~~~~~kErl~~~D~~~~~~   81 (158)
T 2qim_A            4 FTFQDEYTSTIAPAKLYKALV-TDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEG-GESKYVLHKIEAIDEANLGY   81 (158)
T ss_dssp             EEEEEEEEESSCHHHHHHHHT-TTHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEET-TEEEEEEEEEEEEEGGGTEE
T ss_pred             EEEEEEEEecCCHHHHHHHHh-cCccchhhhHHhhCcEEEEEecCCCCCeEEEEEEcCC-CcceeEEEEEEEEecCCCEE
Confidence            789999999999999999984 5888889999966999999999999999999999977 55678999999999999999


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch--hhHHHHHHHHHHHHHHHhhCCC
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF--VSIDTVAKIAEISKNYLLNNRD  155 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~--~~~~~~~~~~k~~e~~l~~~~~  155 (155)
                      +|+++||+++...|++|+++++|.|.++|||+++|+++|++.++..+++..  ..++.+.+|+|++|+||++|||
T Consensus        82 ~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p~  156 (158)
T 2qim_A           82 NYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD  156 (158)
T ss_dssp             EEEEEEESSCCCSEEEEEEEEEEEECSTTCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             EEEEEeccCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            999999998754699999999999998888999999999999876444322  2388999999999999999997

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=100.00  E-value=6.4e-41  Score=250.63  Aligned_cols=149  Identities=19%  Similarity=0.317  Sum_probs=133.8

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCC-CCCceEEEEEecCCCCCcceEEEEEEEEeCC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGD-GGVGTILHIKFKPGTPGFAGYKEKFIEIDNK   78 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~~kErl~~~D~~   78 (155)
                      |.|+++.+++|+|||++||+++. .|+ +.+|+|+|+ |++|+++||+ |++||||.|+|..+ ++.+.+||||+.+|++
T Consensus        15 ~~~k~~~ev~i~apa~kvw~~~~-~d~-~~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~g-g~~~~~kErl~~iD~~   91 (166)
T 2i9y_A           15 LVGKLETDVEIKASADKFHHMFA-GKP-HHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHD-GEAKVAKERIEAVEPD   91 (166)
T ss_dssp             SEEEEEEEEEESSCHHHHHGGGS-SCS-SCCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEET-TEEEEEEEEEEEEETT
T ss_pred             CccEEEEEEEecCCHHHHHHHHh-ccc-ccccccccccceEEEEEcCCCCCCCeEEEEEEecC-CCceEEEEEEEEEecc
Confidence            57899999999999999999963 266 458999997 9999999999 99999999999988 7778999999999999


Q ss_pred             CCeEEEEEEeCCccCcCceEEEEEEEEEeeCCC-ceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhCC
Q 031651           79 KRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSD-SCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNNR  154 (155)
Q Consensus        79 ~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g-~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~  154 (155)
                      +++|+|+++||+++ .+|++|+++++|.|.++| ||+++|+++|++.++.. ++|..+++.+..|+|+||+||++||
T Consensus        92 ~~~~~y~iieGd~~-~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~~~~~-~~p~~~~~~~~~~~k~ie~~l~~~~  166 (166)
T 2i9y_A           92 KNLITFRVIEGDLM-KEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEV-AHPETLLQFCVEVSKEIDEHLLAEE  166 (166)
T ss_dssp             TTEEEEEECCTTGG-GTEEEEEEEEEEEEEEETTEEEEEEEEEEEESSTTT-CCTHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CcEEEEEEEeCCCC-CCeeEEEEEEEEEECCCCCCcEEEEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999985 489999999999998654 89999999999988753 4445678999999999999999997

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=99.97  E-value=7.8e-31  Score=198.76  Aligned_cols=113  Identities=13%  Similarity=0.226  Sum_probs=101.0

Q ss_pred             EEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcC-CCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEE
Q 031651            7 HELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEG-DGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTD   85 (155)
Q Consensus         7 ~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eG-dg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~   85 (155)
                      .+.+|+|||++||++++  ||++ +++|+|.|++| .++| +|++|+||.|+|.+| .+..+++|||+.+|+++|+|+|+
T Consensus        31 v~~~I~Apa~~VW~~v~--df~~-l~~w~P~V~s~-~~eG~~ggvGsvR~lt~~~G-~p~~~vkErL~~~D~~~~~~sY~  105 (183)
T 3rt2_A           31 LVKHIKAPLHLVWSIVR--RFDE-PQKYKPFISRC-VVQGKKLEVGSVREVDLKSG-LPATKSTEVLEILDDNEHILGIR  105 (183)
T ss_dssp             EEEEESSCHHHHHHHHT--CTTC-GGGTCTTEEEE-EESSSCCCTTCEEEEEECCS-STTCEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEEeCCHHHHHHHHh--CcCc-hhhcCccceEE-EeeCCCCCCCcEEEEEeCCC-CccceEEEEEEEEECCCCEEEEE
Confidence            33479999999999999  9987 69999999999 5799 689999999999987 45679999999999999999999


Q ss_pred             EEeCCccCcCceEEEEEEEEEeeC-CC--ceEEEEEEEEEEcCCc
Q 031651           86 VVEGGYLDVGFTLFRVIFEIIEKG-SD--SCIIKSTIEYELREEA  127 (155)
Q Consensus        86 ileg~~~~~~~~~y~~ti~v~~~~-~g--~s~v~W~~~y~~~~~~  127 (155)
                      +++|++   +|++|+++|+|.|.+ +|  +|.|+|+++|++..+.
T Consensus       106 Iieg~l---p~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g~  147 (183)
T 3rt2_A          106 IVGGDH---RLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGN  147 (183)
T ss_dssp             EEEESC---SCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTTC
T ss_pred             EecCCc---ceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCCC
Confidence            999986   799999999999987 65  6999999999976553

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=99.97  E-value=2e-30  Score=199.72  Aligned_cols=136  Identities=11%  Similarity=0.093  Sum_probs=106.9

Q ss_pred             EEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC-CCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEEE
Q 031651            8 ELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD-GGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDV   86 (155)
Q Consensus         8 ~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~i   86 (155)
                      ..+|+|||++||++++  ||++ +|+|+|.|++|++++|+ |++|+||.|+|.+| .+..+++|||+.+|+++|+|+|+|
T Consensus        59 ~~~I~ApadkVW~lv~--Df~~-l~~w~p~V~s~e~~eGd~g~vGsVR~lt~~~G-~p~~~vkErL~~lDde~~~~sYsI  134 (208)
T 3jrs_A           59 AQRIHAPPETVWSVVR--RFDR-PQIYKHFIKSCNVSEDFEMRVGCTRDVNVISG-LPANTSRERLDLLDDDRRVTGFSI  134 (208)
T ss_dssp             EEEESSCHHHHHHHHT--CTTC-GGGTCTTEEEEECCTTCCCSTTCEEEEEECTT-SSCCEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCHHHHHHHHh--CcCC-hhHccccceEEEEecCCCCCCCeEEEEEecCC-CccceEEEEEEEEeccCCEEEEEE
Confidence            3479999999999999  9987 59999999999999997 69999999999988 566799999999999999999999


Q ss_pred             EeCCccCcCceEEEEEEEEEeeCC-CceEEEEEEEEEEcCCcccCCc---hhhHHHHHHHHHHHHHHHh
Q 031651           87 VEGGYLDVGFTLFRVIFEIIEKGS-DSCIIKSTIEYELREEAAANAS---FVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        87 leg~~~~~~~~~y~~ti~v~~~~~-g~s~v~W~~~y~~~~~~~~~~~---~~~~~~~~~~~k~~e~~l~  151 (155)
                      ++|++   |+++|+++|+|.|.++ ++|.++|+++|+.-... +++.   ..+..++..+++.--+-|.
T Consensus       135 ieG~l---pv~~Y~sti~V~p~~~g~~t~V~Wt~~fes~~~D-~p~g~~~e~a~~~~~~vy~~gL~~L~  199 (208)
T 3jrs_A          135 TGGEH---RLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVD-VPEGNSEEDTRLFADTVIRLNLQKLA  199 (208)
T ss_dssp             EESSS---SCTTCEEEEEEEEEEC-----CEEEEEEEEEEEE-CCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeCCc---ceeeEEEEEEEEEccCCCccEEEEEEEEEEccCC-CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99986   7999999999999654 58999999999853322 2221   1245555555554444443

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=99.97  E-value=6.3e-30  Score=196.51  Aligned_cols=138  Identities=14%  Similarity=0.236  Sum_probs=114.1

Q ss_pred             cceEEEEE--EecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCC
Q 031651            2 KGQLSHEL--EVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         2 ~~~~~~~i--~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~   79 (155)
                      .++++.++  +|+|||++||++++  ||++ +++|+|.|++|+ ++|+|++|+||.|+|.+| .+..+++|||+.+|+++
T Consensus        49 ~~k~~~~V~~~I~ApadkVW~lV~--Df~~-l~kW~P~V~s~e-veGdg~vGsVR~vt~~~G-~p~~~vkErL~~lDde~  123 (205)
T 3oqu_A           49 ENQCTSALVKHIKAPLHLVWSLVR--RFDQ-PQKYKPFVSRCT-VIGDPEIGSLREVNVKSG-LPATTSTERLELLDDEE  123 (205)
T ss_dssp             TTEEEEEEEEEESSCHHHHHHHHT--CTTC-GGGTCTTEEEEE-CCSSCCTTCEEEEEECTT-SSCSEEEEEEEEEETTT
T ss_pred             CcEEEEEEeeEEcCCHHHHHHHHh--CcCC-hhHcCccceEEE-eeCCCCCCcEEEEEEcCC-CccceEEEEEEEEECCC
Confidence            47899999  99999999999999  9988 689999999998 589999999999999887 45679999999999999


Q ss_pred             CeEEEEEEeCCccCcCceEEEEEEEEEeeC-CC--ceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHH
Q 031651           80 RVRVTDVVEGGYLDVGFTLFRVIFEIIEKG-SD--SCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYL  150 (155)
Q Consensus        80 ~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~-~g--~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l  150 (155)
                      |+|+|++++|++   +|++|++||+|.|.+ +|  +|.+.|+..+++..+.  .++ .+..++..+++.--+-|
T Consensus       124 ~~~sYsIieG~l---pv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~g~--t~e-~~~~~v~~v~~~gL~~L  191 (205)
T 3oqu_A          124 HILGIKIIGGDH---RLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGN--TKD-ETCYFVEALIRCNLKSL  191 (205)
T ss_dssp             TEEEEEEEEESS---SCTTCEEEEEEEEECCCC-CEEEEEEEEEEECCTTC--CHH-HHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEecCc---ceeEEEEEEEEEEccCCCCceEEEEEEEeccCCCCC--CHH-HHHHHHHHHHHHHHHHH
Confidence            999999999986   899999999999987 45  6899999998865443  111 23455555554443333

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=99.97  E-value=8.4e-30  Score=194.12  Aligned_cols=133  Identities=18%  Similarity=0.302  Sum_probs=103.6

Q ss_pred             EEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEEEE
Q 031651            8 ELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVV   87 (155)
Q Consensus         8 ~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~il   87 (155)
                      ..+|++||++||++++  ||++ ++.|.|.|++|++++|+|++|+||.|+|.+| .+..++||||+.+|+++|+|+|+++
T Consensus        40 ~~~I~Apa~~vW~lv~--df~~-~~~w~p~I~s~e~~eGdg~vGsVR~~t~~~G-~p~~~vkErL~~iD~~~~~~sY~ii  115 (190)
T 3kl1_A           40 TQRIHAPASVVWPLIR--RFDN-PERYKHFVKRCRLISGDGDVGSVREVTVISG-LPASTSTERLEFVDDDHRVLSFRVV  115 (190)
T ss_dssp             EEEESSCHHHHHHHHH--CTTC-GGGTCSSEEEEEEEESSSSTTCEEEEEECSS-SSCEEEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEecCCHHHHHHHHh--CCCC-hhHcccccCEEEEEcCCCCCCeEEEEEecCC-CccceEEEEEEEEeccCCEEEEEEE
Confidence            3479999999999999  9977 4556666999999999999999999999988 6678999999999999999999999


Q ss_pred             eCCccCcCceEEEEEEEEEe-----eCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHH
Q 031651           88 EGGYLDVGFTLFRVIFEIIE-----KGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYL  150 (155)
Q Consensus        88 eg~~~~~~~~~y~~ti~v~~-----~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l  150 (155)
                      +|++   ++++|++++++.+     .++++|+|+|+++|++..+.  .++ .+..++..+++.--+-|
T Consensus       116 eG~~---~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~g~--~~e-~~~~~~~~~~~~gL~~L  177 (190)
T 3kl1_A          116 GGEH---RLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGN--TEE-DTKMFVDTVVKLNLQKL  177 (190)
T ss_dssp             EESS---SCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCTTC--CHH-HHHHHHHHHHHHHHHHH
T ss_pred             ecCC---ccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCCCC--CHH-HHHHHHHHHHHHHHHHH
Confidence            9987   4566666666665     35568999999999964432  111 23444455554443333

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.97  E-value=9.2e-30  Score=181.39  Aligned_cols=119  Identities=17%  Similarity=0.194  Sum_probs=101.1

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKR   80 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~   80 (155)
                      |+|+++.++++++||+|||++++  ++ +++| |.+                +       | .   .   ||+.+|+++|
T Consensus         3 ~~g~~~~e~~i~~~a~k~w~~~~--~~-~~~p-~g~----------------~-------G-~---~---~ie~iD~~~~   48 (122)
T 1vjh_A            3 LKGALSVKFDVKCPADKFFSAFV--ED-TNRP-FEK----------------N-------G-K---T---EIEAVDLVKK   48 (122)
T ss_dssp             SEEEEEEEEEESSCHHHHHHHHH--HH-TTSC-SST----------------T-------C-E---E---EEEEEETTTT
T ss_pred             CCcEEEEEEEecCCHHHHHHHHh--hc-ccCC-ccC----------------C-------C-c---c---EEEEEecccC
Confidence            45899999999999999999998  77 6676 322                1       3 1   1   9999999999


Q ss_pred             eEEEEEEeCCccCcCceEEEEEEEEEeeC-CCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhCCC
Q 031651           81 VRVTDVVEGGYLDVGFTLFRVIFEIIEKG-SDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNNRD  155 (155)
Q Consensus        81 ~~~Y~ileg~~~~~~~~~y~~ti~v~~~~-~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~  155 (155)
                      +|+|+++||+++. +|++|+++++|+|.+ +|||+++|+++|++.++..++ |..+++.+.+|+|++|+||++|||
T Consensus        49 ~~~y~iieGd~~~-~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~~~~~~-p~~~~~~~~~~~k~ie~yll~~p~  122 (122)
T 1vjh_A           49 TMTIQMSGSEIQK-YFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDD-PHSIIDESVKYFKKLDEAILNFKE  122 (122)
T ss_dssp             EEEEEEECTTGGG-TEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCC-SHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             EEEEEEEEccccc-cEEEEEEEEEEEEecCCCCeEEEEEEEEEECCCCCCC-HHHHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999875 899999999999985 568999999999999886444 445799999999999999999997

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.97  E-value=7.3e-29  Score=181.30  Aligned_cols=131  Identities=16%  Similarity=0.253  Sum_probs=108.0

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKR   80 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~   80 (155)
                      |. +++.+++|+|||++||++++  ||.+ +|+|+|.+++|++++|    |++|.+++.+| +   .++|||+.+|++++
T Consensus         1 M~-~v~~si~I~Ap~~~VW~~l~--d~~~-~~~w~p~v~~~~~~~G----G~vR~~~~~~G-~---~~~Erl~~~D~~~~   68 (146)
T 3f08_A            1 MA-HTTTSMEIFGSTEQVWQLIG--GFNS-LPDWLPYIPSSKLTEG----GRVRHLANPDG-E---TIIERLEVFNDKER   68 (146)
T ss_dssp             -C-EEEEEEEESSCHHHHHHHHC--STTC-HHHHCTTCCEEEEEGG----GTEEEEECTTS-C---EEEEEEEEEETTTT
T ss_pred             CC-EEEEEEEEeCCHHHHHHHHh--cccc-HHHhCCCeEEEEEeCC----CeEEEEEeCCC-C---EEEEEEEEEeCCCC
Confidence            54 68999999999999999999  9988 6999999999998875    89999999876 4   89999999999999


Q ss_pred             eEEEEEEeCCccCcCceEEEEEEEEEe-eCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHH
Q 031651           81 VRVTDVVEGGYLDVGFTLFRVIFEIIE-KGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYL  150 (155)
Q Consensus        81 ~~~Y~ileg~~~~~~~~~y~~ti~v~~-~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l  150 (155)
                      +++|++++|++   |+++|.++++|.| .++|||+++|+++|+|.+.   .++ .+...+..+++.--+-|
T Consensus        69 ~~~y~iv~g~~---~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p~g~---~~~-~~~~~~~~~~~~~L~~L  132 (146)
T 3f08_A           69 YYTYSIMNAPF---PVTNYLSTIQVKEGTESNTSLVEWSGTFTPVAV---SDE-EAINLVHGIYSDGLKAL  132 (146)
T ss_dssp             EEEEEEEECSS---SEEEEEEEEEEEECSSTTCEEEEEEEEEEESSS---CHH-HHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCC---ceeEEEEEEEEEEecCCCcEEEEEEEEEEeCCC---CHH-HHHHHHHHHHHHHHHHH
Confidence            99999999975   7999999999999 5677899999999998322   221 23445555554443333

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=99.97  E-value=1.8e-29  Score=194.70  Aligned_cols=107  Identities=14%  Similarity=0.182  Sum_probs=98.1

Q ss_pred             EEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC-CCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEEE
Q 031651            8 ELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD-GGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDV   86 (155)
Q Consensus         8 ~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~i   86 (155)
                      ..+|+|||++||++++  ||++ +++|+|.|++|++++|+ +++|+||.|+|.+| .+..+++|||+.+|+++|+|+|+|
T Consensus        55 ~~~I~ApadkVW~lv~--dF~~-l~~w~p~V~s~e~~eGd~g~vGsVR~lt~~~G-~p~~~vkErL~~lDd~~~~~sYsI  130 (211)
T 3k3k_A           55 AQRIHAPPELVWSIVR--RFDK-PQTYKHFIKSCSVEQNFEMRVGCTRDVIVISG-LPANTSTERLDILDDERRVTGFSI  130 (211)
T ss_dssp             EEEESSCHHHHHHHHT--CTTC-GGGTCSSEEEEECCTTCCCCTTCEEEEEESSS-SSCEEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCHHHHHHHHh--CcCC-hhHcCccceEEEEecCCCCCCCcEEEEEecCC-CccceEEEEEEEEeccCCEEEEEE
Confidence            3479999999999999  9987 68999999999999997 58999999999988 566799999999999999999999


Q ss_pred             EeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651           87 VEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL  123 (155)
Q Consensus        87 leg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~  123 (155)
                      ++|++   +|++|+++|+|.|.++|+  ++|+++|+.
T Consensus       131 ieg~l---pv~~Y~sti~V~p~~~gg--V~Wt~~fes  162 (211)
T 3k3k_A          131 IGGEH---RLTNYKSVTTVHRFEKEN--RIWTVVLES  162 (211)
T ss_dssp             EEETT---GGGTCEEEEEEEEEEETT--EEEEEEEEE
T ss_pred             eecCc---ceeEEEEEEEEEECCCCC--EEEEEEEEE
Confidence            99986   799999999999988765  999999985

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.96  E-value=1.3e-27  Score=177.48  Aligned_cols=109  Identities=14%  Similarity=0.241  Sum_probs=97.2

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCC--CCceEEEEEecCCCCCcceEEEEEEEEeC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDG--GVGTILHIKFKPGTPGFAGYKEKFIEIDN   77 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg--~~GsvR~~~~~~g~~~~~~~kErl~~~D~   77 (155)
                      |. +++.+++|+|||++||++++  ||.++  +|+|. +++|++++|++  ++|++|.+    + +   .++|||+.+|+
T Consensus         1 M~-~v~~si~I~Ap~~~VW~~v~--Df~~~--~w~P~v~~s~e~~eg~~~~~vGsvR~~----g-g---~v~Erl~~~D~   67 (160)
T 3p51_A            1 MP-KVYNSIVVDAPVERVWSRIR--NFHDF--SWAPSLIKSCKKVGGGGGYSVGARRLL----N-G---EFLDTLIAYSE   67 (160)
T ss_dssp             -C-EEEEEEEESSCHHHHHHHHC--CTTCC--TTCTTTCCCEEEESSCCTTCTTCEEEE----T-T---TEEEEEEEEET
T ss_pred             CC-EEEEEEEECCCHHHHHHHHh--CcCCC--eEccCceEEEEEEecCCCCCCCCEEEE----C-C---EEEEEEEEEcC
Confidence            45 68999999999999999998  99884  99999 66669999974  89999998    3 3   79999999999


Q ss_pred             CCCeEEEEEEeCCccCcC-----ceEEEEEEEEEeeC-CCceEEEEEEEEEEcC
Q 031651           78 KKRVRVTDVVEGGYLDVG-----FTLFRVIFEIIEKG-SDSCIIKSTIEYELRE  125 (155)
Q Consensus        78 ~~~~~~Y~ileg~~~~~~-----~~~y~~ti~v~~~~-~g~s~v~W~~~y~~~~  125 (155)
                      ++++|+|++++|++   |     +++|.++++|.|.+ +|||.|+|+++|++.+
T Consensus        68 ~~~~~sY~ii~g~l---~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~  118 (160)
T 3p51_A           68 IERRIMYSMDEGPS---PVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS  118 (160)
T ss_dssp             TTTEEEEEEEECST---TSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESC
T ss_pred             CCcEEEEEEecCCC---cccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH
Confidence            99999999999975   5     99999999999986 6789999999999864

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=99.96  E-value=1.2e-27  Score=181.45  Aligned_cols=136  Identities=17%  Similarity=0.196  Sum_probs=107.2

Q ss_pred             EEEEecCChHhHhchhhccccccchhhhcCCcceEEEEc-CCCC----CceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            7 HELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVE-GDGG----VGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         7 ~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~e-Gdg~----~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      ...+|+|||++||++++  ||++ ++.|+|.|++|++.+ |+|+    +|+||.|+|.+| .+..+++|||+.+|+++|+
T Consensus        34 ~~~~I~Ap~d~VWalVr--dF~~-p~~w~p~V~s~~~~e~Gdg~~~~~vGsVR~ltl~~G-~P~~~i~ErL~~lDde~~~  109 (189)
T 3oji_A           34 IAHRVDAPAHAIWRFVR--DFAN-PNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSG-LPASTSVEILEVLDEEKRI  109 (189)
T ss_dssp             EEEEESSCHHHHHHHHS--CTTC-GGGTCTTEEEEEECCC----CCCSTTCEEEEEECSS-SSBSEEEEEEEEEETTTTE
T ss_pred             EEEEEcCCHHHHHHHHh--CCCC-hhhCccccceEEEEecCCCCccCCCCcEEEEEecCC-CcCceEEEEEEEEeccCCE
Confidence            45679999999999999  9977 678999999999887 8875    999999999888 4567999999999999999


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeC---CC-----ceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhh
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKG---SD-----SCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~---~g-----~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                      |+|+|++|++   ++++|+++++|.|..   +|     +|++.|++.+++..+.  .+ +.+..++..+++.--+-|.+
T Consensus       110 ~sY~Iieg~~---pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~g~--t~-e~~~~~v~~v~~~gL~~L~~  182 (189)
T 3oji_A          110 LSFRVLGGEH---RLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGN--TE-EDTRMFVDTVVKSNLQNLAV  182 (189)
T ss_dssp             EEEEEEECSB---SSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTS--CH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCC---ccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCCCC--CH-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999987   799999999999853   33     5888888888754332  22 23567777777665555543

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.94  E-value=1.4e-25  Score=162.99  Aligned_cols=112  Identities=19%  Similarity=0.305  Sum_probs=101.9

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC-CCCceEEEEEecCCCCCcceEEEEEEEEeCCC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD-GGVGTILHIKFKPGTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~   79 (155)
                      |. +++.+++|+|||++||+++.  |+.+ +|+|+|.+++|++.+|+ +++|++|.+++..| +   .++|+|+.+|+.+
T Consensus         1 M~-~v~~si~I~ap~e~Vw~~l~--d~~~-~~~w~p~v~~~~~~~g~~~~~G~~r~~~~~~G-~---~~~e~i~~~d~~~   72 (151)
T 2le1_A            1 MA-TLRRSVEVAAPAADVWTLVG--DFSA-IHRWHPQVSAPTLRGASPHTPGAERVFGAGTE-E---ELVERLVERDESA   72 (151)
T ss_dssp             CC-EEEEEEEESSCHHHHHHHHT--TSGG-GGGTCTTCCCEEEESSCTTSTTCEEEESSSSS-S---CEEEEEEEEETTT
T ss_pred             Cc-eEEEEEEecCCHHHHHHHHh--CcCc-HHHhcCCceEEEEECCCCCCCCeEEEEEeCCC-C---EEEEEEEEEeCCC
Confidence            55 78999999999999999999  9977 69999999999999886 68999999998665 3   7999999999999


Q ss_pred             CeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651           80 RVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL  123 (155)
Q Consensus        80 ~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~  123 (155)
                      ++++|++++|+.   ++++|.++++|.|.++++|.++|+++|++
T Consensus        73 ~~~~~~~~~g~~---~~~~~~~~~~l~~~~~~gt~v~w~~~f~~  113 (151)
T 2le1_A           73 RRLVYTMPDPPF---PITNHRAVLEVVPRDDRHCTVVWTAMFDC  113 (151)
T ss_dssp             TEEEEEEEECSS---SEEEEEEEEEEEESSSSCEEEEEEEEEEE
T ss_pred             CEEEEEEecCCC---CceeEEEEEEEEECCCCcEEEEEEEEEEe
Confidence            999999999874   79999999999997667899999999997

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.73  E-value=7.2e-16  Score=113.85  Aligned_cols=116  Identities=17%  Similarity=0.317  Sum_probs=91.5

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEE--ecCCCCCcceEEEEEEEEeCC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIK--FKPGTPGFAGYKEKFIEIDNK   78 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~--~~~g~~~~~~~kErl~~~D~~   78 (155)
                      |.+.++.++.|++||++||+++.  |+.+ +|.|+|.+.+++++++++..-.+| ++  ..-+ |.......+. .+|+.
T Consensus         1 M~~~v~~si~I~a~~~~V~~lV~--Dve~-yP~~~p~~~~~~vl~~~~~~~~~r-l~~~~~~~-G~~~~~ts~~-~~d~~   74 (159)
T 3tl1_A            1 MAGHTDNEITIAAPMELVWNMTN--DIEK-WPGLFSEYASVEVLGRDDDKVTFR-LTMHPDAD-GKVWSWVSER-VADPV   74 (159)
T ss_dssp             CCSEEEEEEEESSCHHHHHHHHT--CGGG-HHHHCSSEEEEEEEEECSSEEEEE-EEECCCTT-SCCCEEEEEE-EEETT
T ss_pred             CCCeeEEEEEecCCHHHHHHHHH--hHHH-hhhhhhCceEEEEEecCCCEEEEE-EEEEeccC-ceEEEEEEEE-EEcCC
Confidence            88999999999999999999999  9977 899999999999888774323333 43  3333 3222333333 48999


Q ss_pred             CCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031651           79 KRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA  127 (155)
Q Consensus        79 ~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~  127 (155)
                      +++|+|+.++++    |++++.++.+|.|.++ ||.|+|..+|+..++.
T Consensus        75 ~~~I~~~~~~~g----Pf~~l~g~W~f~p~~~-gt~V~~~~df~~~~~~  118 (159)
T 3tl1_A           75 TRTVRAQRVETG----PFQYMNIVWEYAETAE-GTVMRWTQDFAMKPDA  118 (159)
T ss_dssp             TTEEEEEESSCT----TEEEEEEEEEEEEETT-EEEEEEEEEEEECTTC
T ss_pred             CCEEEEEEccCC----ChhhccCEEEEEECCC-CEEEEEEEEEEecCCC
Confidence            999999988543    4888999999999887 7999999999987664

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.71  E-value=1e-15  Score=114.05  Aligned_cols=114  Identities=16%  Similarity=0.257  Sum_probs=89.4

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEE-EEE--ecCCCCCc-ceEEEEEEEEe
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTIL-HIK--FKPGTPGF-AGYKEKFIEID   76 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR-~~~--~~~g~~~~-~~~kErl~~~D   76 (155)
                      |++.++.++.|++||++||+++.  |+.+ +|.|+|.+.+++++++++  +.+| .++  ...+ |.. .+..++  .+|
T Consensus         1 Ma~~v~~si~I~a~~~~v~~lv~--Dv~~-~p~w~p~~~~~~~~~~~~--~~~~~~l~~~~~~~-G~~~~~ts~~--~~d   72 (169)
T 3tvq_A            1 MAARTDNSIVVNAPFELVWDVTN--DIEA-WPELFSEYAEAEILRQDG--DGFDFRLKTRPDAN-GRVWEWVSHR--VPD   72 (169)
T ss_dssp             CCEEEEEEEEESSCHHHHHHHHT--CGGG-HHHHCTTEEEEEEEEEET--TEEEEEEEECCCTT-SCCCEEEEEE--EEE
T ss_pred             CCCeEEEEEEecCCHHHHHHHHH--hhhH-HHHHHhheeEEEEEecCC--CEEEEEEEEEecCC-CeEEEEEEEE--EEc
Confidence            88999999999999999999999  9977 899999999999887763  2333 233  2222 322 233333  378


Q ss_pred             CCCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031651           77 NKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA  127 (155)
Q Consensus        77 ~~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~  127 (155)
                      +..++++|+.++++    |++.|.++.+|.|.++| |.|+|+.+|+..++.
T Consensus        73 ~~~~~I~~~~l~~g----Pf~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~  118 (169)
T 3tvq_A           73 KGSRTVRAHRVETG----PFAYMNLHWTYRAVAGG-TEMRWVQEFDMKPGA  118 (169)
T ss_dssp             GGGTEEEEEESSCT----TEEEEEEEEEEEEETTE-EEEEEEEEEEECTTC
T ss_pred             CCCcEEEEEEcCCC----ChhheeeEEEEEECCCC-EEEEEEEEEEecCCC
Confidence            99999999987554    48889999999999876 999999999987664

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.62  E-value=2.2e-14  Score=106.30  Aligned_cols=114  Identities=14%  Similarity=0.272  Sum_probs=88.7

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      +++.+++|++||++||+++.  |+.+ +|.|+|.+.++++++++++ +..-.++...+ |.......++ .+|+..+++.
T Consensus         6 ~v~~si~I~ap~~~V~~~v~--D~~~-~p~~~P~~~~~~v~~~~~~-~~~~~~~~~~~-G~~~~~~s~~-~~~~~~~~i~   79 (172)
T 3tfz_A            6 HVEHTVTVAAPADLVWEVLA--DVLG-YADIFPPTEKVEILEEGQG-YQVVRLHVDVA-GEINTWTSRR-DLDPARRVIA   79 (172)
T ss_dssp             EEEEEEEESSCHHHHHHHHH--CGGG-HHHHCSSEEEEEEEEEETT-EEEEEEEEEET-TEEEEEEEEE-EEETTTTEEE
T ss_pred             EEEEEEEeCCCHHHHHHHHH--hHHH-HHhhCcccceEEEEecCCC-EEEEEEEEecC-CEEEEEEEEE-EEeCCCCEEE
Confidence            78999999999999999999  9977 8999999999998876532 22222444333 3222233333 3788899999


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE  126 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~  126 (155)
                      |+.++++.   +++.+.++.++.|.++++|.|+|+.+|+..+.
T Consensus        80 ~~~~~~~g---pf~~~~g~w~f~~~~~~~t~V~~~~~~~~~~~  119 (172)
T 3tfz_A           80 YRQLETAP---IVGHMSGEWRAFTLDAERTQLVLTHDFVTRAA  119 (172)
T ss_dssp             EEEEECCT---TEEEEEEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             EEEeeCCC---ChhhcEEEEEEEECCCCcEEEEEEEEEEEcCh
Confidence            99998654   68899999999998878999999999997654

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.62  E-value=2.1e-14  Score=105.49  Aligned_cols=105  Identities=19%  Similarity=0.253  Sum_probs=87.2

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      .+++.+++|+|||++||+++.  |+.+ +|.|.|.+.+++ .+|.-.+|+.+.++...+ +   .+..+|+.+|+.. .+
T Consensus        18 ~~i~~si~I~Appe~VW~~lt--D~~~-~~~W~p~v~~~~-~~G~~~~G~~~~~~~~~~-~---~~~~~v~~~~p~~-~~   88 (155)
T 3ijt_A           18 MKFSFELAVNTKKEDAWTYYS--QVNQ-WFVWEGDLEQIS-LEGEFTTGQKGKMKMEDM-P---ELAFTLVEVRENQ-CF   88 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH--CGGG-GGGTSTTEEEEE-ESSSSSTTCEEEEEETTS-C---CEEEEECCCBTTT-EE
T ss_pred             EEEEEEEEEcCCHHHHHHHHh--Cccc-ccccchhhEeee-ccCCCCCCCEEEEEeCCC-C---cEEEEEEEEeCCc-EE
Confidence            478999999999999999999  9976 899999999888 467667899999888765 3   6889999997665 48


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEE
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYE  122 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~  122 (155)
                      +|..-   .   |...|+.+.++.|.++|+|.++|+.+|.
T Consensus        89 ~~~~~---~---p~~~~~~~h~l~p~~~ggTrvt~~~~~~  122 (155)
T 3ijt_A           89 SDLTA---T---PFGNVLFEHEILENPDGTISLRHSVSLT  122 (155)
T ss_dssp             EEEEE---E---TTEEEEEEEEEEECTTSCEEEEEEEEES
T ss_pred             EEEEe---c---CCeEEEEEEEEEEcCCCcEEEEEEEEEE
Confidence            88643   2   4556778889999877899999999994

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.62  E-value=1.1e-13  Score=97.09  Aligned_cols=111  Identities=19%  Similarity=0.191  Sum_probs=85.0

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      +++.+++|++|+++||+++.  |+.+ +|+|+|.+.+++++++++ .|....+++..+ |.......++. .++.++++.
T Consensus         3 ~~~~~~~i~ap~~~V~~~l~--d~~~-~~~w~p~~~~~~~~~~~~-~g~~~~~~~~~~-g~~~~~~~~~~-~~~~~~~i~   76 (147)
T 2d4r_A            3 EVRAERYIPAPPERVYRLAK--DLEG-LKPYLKEVESLEVVAREG-ARTRSRWVAVAM-GKKVRWLEEEE-WDDENLRNR   76 (147)
T ss_dssp             EEEEEEEESSCHHHHHHHHH--CHHH-HGGGCTTEEEEEEEEEET-TEEEEEEEEEET-TEEEEEEEEEE-EETTTTEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHh--Chhh-hhhhcccccEEEEEEeCC-CccEEEEEEEeC-CceEEEEEEEE-EcCCCcEEE
Confidence            68899999999999999999  9976 799999998898776542 255556665433 32223455554 457889999


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE  126 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~  126 (155)
                      |++.+|+     ++.+..++++.|.++| |.++|+.+|++.+.
T Consensus        77 ~~~~~g~-----~~~~~~~~~~~~~~~g-T~v~~~~~~~~~~~  113 (147)
T 2d4r_A           77 FFSPEGD-----FDRYEGTWVFLPEGEG-TRVVLTLTYELTIP  113 (147)
T ss_dssp             EEEEEES-----CSEEEEEEEEEECSSS-EEEEEEEEEECCCT
T ss_pred             EEeccCC-----hhheEEEEEEEECCCC-cEEEEEEEEecCCc
Confidence            9998764     3456889999998775 99999999997653

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.41  E-value=4.5e-11  Score=86.66  Aligned_cols=142  Identities=12%  Similarity=0.101  Sum_probs=90.7

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEE--EEEEEEeCC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYK--EKFIEIDNK   78 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~k--Erl~~~D~~   78 (155)
                      |+-+++.+++|++|+++||+++.  |+.+ +|+|+|.+.++++.+|+   +....+++..+ +....+.  -++..+|+.
T Consensus         1 M~m~i~~~~~i~ap~e~Vw~~l~--D~e~-~~~w~p~~~~~~~~~~~---~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~   73 (162)
T 2pcs_A            1 MSLNGNGSIELKGTVEEVWSKLM--DPSI-LSKCIMGCKSLELIGED---KYKADLQIGIA-AVKGKYDAIIEVTDIKPP   73 (162)
T ss_dssp             --CEEEEEEEEESCHHHHHHHHT--CHHH-HHHHSTTEEEEEEEETT---EEEEEEEECCG-GGCEEEEEEEEEEEEETT
T ss_pred             CeEEEeeEEEecCCHHHHHHHhc--CHHH-HHhhCCCceEeEEeCCC---eEEEEEEEEee-eEEEEEEEEEEEEecCCC
Confidence            66679999999999999999999  9865 89999998888876543   12223444333 2112333  356666664


Q ss_pred             CCeEEEEEEe-CCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcc-cCCch---hhHHHHHHHHHHHHHHHhhC
Q 031651           79 KRVRVTDVVE-GGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAA-ANASF---VSIDTVAKIAEISKNYLLNN  153 (155)
Q Consensus        79 ~~~~~Y~ile-g~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~-~~~~~---~~~~~~~~~~k~~e~~l~~~  153 (155)
                       +++.++... |..   +...+..+++|.|.++++|.++|+++|+..+... ...+.   .....+...++.+.++|-+.
T Consensus        74 -~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~  149 (162)
T 2pcs_A           74 -YHYKLLVNGEGGP---GFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKS  149 (162)
T ss_dssp             -TEEEEEEEEEETT---EEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -cEEEEEEEecCCC---ccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             566666642 222   3445789999999656689999999999765321 11111   13344556666666666543

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.37  E-value=1.1e-10  Score=83.81  Aligned_cols=113  Identities=13%  Similarity=0.235  Sum_probs=76.0

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEE--EEEEEeCC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKE--KFIEIDNK   78 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kE--rl~~~D~~   78 (155)
                      |.-+++.+++|++|+++||+++.  |+.+ +|+|+|.+.+++ .+|+   +..-.++...+ +......-  ++..+++ 
T Consensus        11 M~m~i~~~~~i~ap~e~Vw~~l~--D~~~-~~~w~p~~~~~~-~~~~---~~~~~~~~~~g-~~~~~~~~~~~~~~~~~-   81 (157)
T 2ns9_A           11 LKVRYEGSFEVSKTPEEVFEFLT--DPKR-FSRAFPGFKSVE-VEDG---SFTIELRLSLG-PLRGDARVRASFEDLEK-   81 (157)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHHT--CHHH-HGGGSTTEEEEE-EETT---EEEEEEEEESS-SSEEEEEEEEEEEEEET-
T ss_pred             EEEEEeeEEEEcCCHHHHHHHHc--CHHH-HHhhCCCceEEE-ECCC---EEEEEEEEEEc-ceeEEEEEEEEEEecCC-
Confidence            44578999999999999999999  9865 799999988888 5443   12222333333 21122333  4546665 


Q ss_pred             CCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651           79 KRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE  125 (155)
Q Consensus        79 ~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~  125 (155)
                      .+++.|+....+... +++ +..++++.|.+ ++|.++|+.+|+..+
T Consensus        82 ~~~i~~~~~~~~~~~-~~~-~~~~~~l~~~~-~gT~v~~~~~~~~~g  125 (157)
T 2ns9_A           82 PSKATVKGSGRGAGS-TLD-FTLRFAVEPSG-GGSRVSWVFEGNVGG  125 (157)
T ss_dssp             TTEEEEEEEEECSSE-EEE-EEEEEEEEEET-TEEEEEEEEEEEEEE
T ss_pred             CcEEEEEEEecCCCc-cEE-EEEEEEEEeCC-CcEEEEEEEEEEECc
Confidence            467777653222111 343 67899999987 689999999998654

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.36  E-value=9e-12  Score=89.46  Aligned_cols=113  Identities=13%  Similarity=0.137  Sum_probs=86.9

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC--CC-CceEEEEEecCCCCCcceEEEEEEEEeC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD--GG-VGTILHIKFKPGTPGFAGYKEKFIEIDN   77 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd--g~-~GsvR~~~~~~g~~~~~~~kErl~~~D~   77 (155)
                      |. +++.++.|++|+++||+++.  |..+ +|+|+|.++++++++.+  ++ .+....+.+.-+ +-.....-++. +|+
T Consensus         1 M~-~~~~s~~i~ap~~~v~~~v~--D~~~-~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~v~-~~~   74 (148)
T 1t17_A            1 MH-RHVVTKVLPYTPDQLFELVG--DVDA-YPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFS-FLREKFATRVR-RDK   74 (148)
T ss_dssp             CC-EEEEEEEESSCTHHHHHHHT--TTTC-CSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTT-SSCCEEEEEEE-EET
T ss_pred             CC-EEEEEEEecCCHHHHHHHHH--HHhh-HHhhCCCcCeeEEEEecCCCCCceEEEEEEEEec-ceeEEEEEEEE-EcC
Confidence            44 78999999999999999999  9977 79999998888877643  21 345555665443 33344566766 577


Q ss_pred             CCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651           78 KKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE  125 (155)
Q Consensus        78 ~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~  125 (155)
                      .++++.++.++|+     ++.+.++.++.|.++| |.++++.+|+..+
T Consensus        75 ~~~~i~~~~~~G~-----f~~~~g~w~f~~~~~g-t~v~~~~~~~~~~  116 (148)
T 1t17_A           75 DARSIDVSLLYGP-----FKRLNNGWRFMPEGDA-TRVEFVIEFAFKS  116 (148)
T ss_dssp             TTCEEEEEESSTT-----SSCEEEEEEEEEETTE-EEEEEEEEECCSC
T ss_pred             CCcEEEEEECCCC-----hhccEEEEEEEECCCC-eEEEEEEEEEECc
Confidence            7779999999874     4556899999998876 9999999999753

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.27  E-value=1.4e-10  Score=84.15  Aligned_cols=110  Identities=9%  Similarity=0.119  Sum_probs=78.4

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      .++.++.|++|+++||+++.  |+.+ +|+|+|.+.+++++++.   ++.-.+....| .......-++... ..++.+.
T Consensus         5 ~v~~s~~I~ap~e~V~~~~~--D~e~-~p~w~p~~~~v~~~~~~---~~~~~~~~~~G-~~~~~~~~~v~e~-~p~~~i~   76 (155)
T 3ggn_A            5 VVRDAVTIGKPAEQLYAVWR--DLPG-LPLLMTHLRSVEVLDDK---RSRWTVEAPAP-LGTVSWEAELTAD-EPGKRIA   76 (155)
T ss_dssp             EEEEEEEESSCHHHHHHHHH--CGGG-HHHHSTTCCEEEECSSS---EEEEEEECCTT-TCEEEEEEEEEEE-ETTTEEE
T ss_pred             EEEEEEEEcCCHHHHHHHHh--CHHH-hHHHhhhceEEEEecCC---eeEEEEEecCC-cceEEEEEEEEEe-cCCCEEE
Confidence            67889999999999999999  9976 89999999999976542   22222333212 1223455566654 5678899


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEee-CCCceEEEEEEEEEEcCC
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEK-GSDSCIIKSTIEYELREE  126 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~-~~g~s~v~W~~~y~~~~~  126 (155)
                      |+.++|+..     .+.+++++.+. ++++|.++++++|++.++
T Consensus        77 ~~~~~g~~~-----~~~g~~~F~~~~~~~gT~V~~~~~~~~~~~  115 (155)
T 3ggn_A           77 WRSLPGARI-----ENSGEVLFRPAPGARGTEVVVRLTYRPPGG  115 (155)
T ss_dssp             EEECTTCSS-----CEEEEEEEEECSSSSCEEEEEEEEEC----
T ss_pred             EEECCCCCc-----ceEEEEEEEECCCCCceEEEEEEEEECCCc
Confidence            999887632     25788899998 466899999999998653

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=99.15  E-value=1.1e-09  Score=80.09  Aligned_cols=107  Identities=14%  Similarity=0.207  Sum_probs=75.7

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEe---cCCCCC--cceEEEEEEEEeCC
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKF---KPGTPG--FAGYKEKFIEIDNK   78 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~---~~g~~~--~~~~kErl~~~D~~   78 (155)
                      .++.+++|++||++||+++.  |..+ +|.++|.+...+- .++   |..| +..   .-| +.  ......|.. +|++
T Consensus         8 ~v~~s~~I~ap~e~v~~lv~--Dve~-w~~~yp~~~p~~~-~~~---~~~~-~~~a~l~vg-~~~~~~~~~s~~~-~~~~   77 (161)
T 3p9v_A            8 ELNRDLEIPASYDEVFDLLA--DVPK-SASHFPKVDKLVD-LGN---NAYR-WEMEKVGVD-KHAIQSVYACTYH-ADKE   77 (161)
T ss_dssp             EEEEEEEESSCHHHHHHHHT--CHHH-HHTTSTTEEEEEE-EET---TEEE-EEECCBSSG-GGCBCCEEEEEEE-EETT
T ss_pred             EEEEEEEEcCCHHHHHHHHh--Chhh-hHhhCCCeEEEEE-cCC---CceE-EEEEEEeee-eEEEEEEEEEEEE-EcCC
Confidence            35667779999999999999  9877 7888888444432 233   2222 333   222 11  113334433 6777


Q ss_pred             CCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031651           79 KRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR  124 (155)
Q Consensus        79 ~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~  124 (155)
                      ++++.+++++|+.    .+...++.++.|.++|+|.|+|+.+|+..
T Consensus        78 ~~~I~~~~~~g~~----~~~l~g~w~f~p~~~g~t~V~~~~~~e~~  119 (161)
T 3p9v_A           78 AGKITWSPIKGEG----NGVVSGSWTLSAKGDNATAVKFQTSAELT  119 (161)
T ss_dssp             TTEEEEEECTTST----TEEEEEEEEEEESSSSCEEEEEEEEEEEE
T ss_pred             CCEEEEEEecCcc----ceeEEEEEEEEECCCCeEEEEEEEEEEEc
Confidence            8999999987653    36678899999998888999999999987

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=99.03  E-value=3.7e-08  Score=69.50  Aligned_cols=139  Identities=8%  Similarity=-0.031  Sum_probs=90.5

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCC--cceEEEEcCCCCCceEEEEEec--CCCCCcceEEEEEEEEe
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT--VEEIEVVEGDGGVGTILHIKFK--PGTPGFAGYKEKFIEID   76 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~--v~s~e~~eGdg~~GsvR~~~~~--~g~~~~~~~kErl~~~D   76 (155)
                      |..+++.+++|+||+++||+++.  |... +++|.+.  +. +...+++-.+|..-.+.+.  .+ |......-++..++
T Consensus         1 M~~~~~~~~~i~ap~e~Vw~alt--d~~~-~~~W~~~~~~~-~~~~~~~~~~Gg~~~~~~~~~~~-g~~~~~~~~v~~~~   75 (147)
T 1z94_A            1 MPNTIRLHRVLSAPPERVYRAFL--DPLA-LAKWLPPEGFV-CKVLEHDARVGGAYKMEFLAFAS-GQKHAFGGRYLELV   75 (147)
T ss_dssp             -CCCEEEEEEESSCHHHHHHHTT--CHHH-HHHHSSCTTEE-EEEEEECCSTTCEEEEEEEETTT-CCEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCHHHHHHHhC--CHHH-HhhccCCCCEe-eeEEEEccCCCcEEEEEEEECCC-CCEEEEEEEEEEEc
Confidence            66789999999999999999998  8754 7899864  32 2223455456665555543  22 32335777888886


Q ss_pred             CCCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhh
Q 031651           77 NKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        77 ~~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                      + ++.+.|+...++... + .....++++.+.++ +|.++++.++.+...    ......+....++..|.++|-.
T Consensus        76 p-~~~l~~~~~~~~~~~-~-~~~~~~~~l~~~~~-gT~l~~~~~~~~~~~----~~~~~~~gw~~~L~~L~~~le~  143 (147)
T 1z94_A           76 P-GERIRYTDRFDDAGL-P-GDMITTITLAPLSC-GADLSIVQEGIPDAI----PPENCYLGWQQSLKQLAALVEP  143 (147)
T ss_dssp             T-TTEEEEEEEESCCC-----CEEEEEEEEEETT-EEEEEEEEECCCTTS----CHHHHHHHHHHHHHHHHHHHSC
T ss_pred             C-CCEEEEEEEEeCCCC-C-CcEEEEEEEEecCC-CEEEEEEEEcCCchh----hHHHHHHHHHHHHHHHHHHHHh
Confidence            5 678888886553211 1 12467888888864 799999988753211    1112345666777778777754

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=98.88  E-value=7.4e-08  Score=71.10  Aligned_cols=138  Identities=7%  Similarity=-0.051  Sum_probs=84.8

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCC--cceEEEEcCCCCCceEEEEEecC-CCCCcceEEEEEEEEeCCC
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT--VEEIEVVEGDGGVGTILHIKFKP-GTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~--v~s~e~~eGdg~~GsvR~~~~~~-g~~~~~~~kErl~~~D~~~   79 (155)
                      .+++.+++|+||+++||+++.  |... +++|++.  +. +...+++-.+|..-.+.+.. + |..-.+.-++..+++ .
T Consensus        22 ~~i~~~r~i~Ap~e~Vw~alt--dpe~-~~~W~~~~~~~-~~~~~~d~~~Gg~~~~~~~~~~-G~~~~~~~~v~e~~p-~   95 (178)
T 1xuv_A           22 QEIIITREFDAPRELVFKAFT--DPDL-YTQWIGPRGFT-TALKIFEPKNGGSWQYIQKDPE-GNEYAFHGVNHDVTE-P   95 (178)
T ss_dssp             SEEEEEEEESSCHHHHHHHHH--CHHH-HTTTCSSTTCE-EEEEEECCSTTCEEEEEEECTT-SCEEEEEEEEEEEET-T
T ss_pred             cEEEEEEEECCCHHHHHHHhC--CHHH-HHhCCCCCCcc-ceEEEEecccCCEEEEEEECCC-CCEEEEEEEEEEEeC-C
Confidence            467888999999999999998  8754 7888643  32 22234554455554444432 2 322346778888865 5


Q ss_pred             CeEEEEEEeCC-ccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHHh
Q 031651           80 RVRVTDVVEGG-YLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        80 ~~~~Y~ileg~-~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l~  151 (155)
                      +.+.|+...++ +..  -.....++.+.|.++|+|.++++.+|.+..   ..+..   ...+....++..|.+||-
T Consensus        96 ~rl~~~~~~~~~~~~--~~~~~v~~~l~~~~~ggT~lt~~~~~~~~~---~~~~~~~~~~~~Gw~~~L~~Lk~~le  166 (178)
T 1xuv_A           96 ERIISTFEFEGLPEK--GHVILDTARFEALPGDRTKLTSHSVFQTIE---DRDGMLQSGMEEGINDSYERLDELLE  166 (178)
T ss_dssp             TEEEEEEEETTSSSS--CCCEEEEEEEEEETTTEEEEEEEEECSSHH---HHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEecCCCCC--CCcEEEEEEEEEcCCCCEEEEEEEEeCCHH---HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            67788775433 210  113577889999876789999998863211   00100   112455566677777664

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=98.84  E-value=1.7e-07  Score=65.75  Aligned_cols=134  Identities=13%  Similarity=0.004  Sum_probs=83.3

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      .+++.+++|+||+++||+++.  |..+ +++|.++ ..     +++-.+|..-.+....+ +..-.+..++..+++ ++.
T Consensus         5 ~~i~~~~~i~ap~e~Vw~~lt--d~~~-~~~W~~~~~~-----~~~~~~G~~~~~~~~~~-g~~~~~~~~v~~~~p-~~~   74 (146)
T 2leq_A            5 LIAQVKTVINAPIEKVWEALV--NPEI-IKEYMFGTTV-----VSDWKEGSQIVWKGEWK-GKAYEDKGTILQFNE-RSI   74 (146)
T ss_dssp             EEEEEEEEECSCHHHHHHHHS--CTTH-HHHHSSSCEE-----ECCCSTTCEEEEEEEET-TEEEEEEEEEEEEET-TTE
T ss_pred             ceEEEEEEECCCHHHHHHHHc--CHHH-hceeEcCCcc-----eeccCCCCEEEEEecCC-CceecccEEEEEEcC-CCE
Confidence            478899999999999999998  8865 7999632 21     24434555555655443 322346788888876 667


Q ss_pred             EEEEEEeCC-cc-CcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651           82 RVTDVVEGG-YL-DVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        82 ~~Y~ileg~-~~-~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~  151 (155)
                      +.|+..... .+ ..+-.....++++.|.++ +|.++|+.+..+..    .......+....++..|.+||-
T Consensus        75 l~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~~~----~~~~~~~~gw~~~l~~Lk~~le  141 (146)
T 2leq_A           75 LQYSHFSPLTGKPDLPENYHVVTITLTALKK-GVEVELTQDNNETE----KEQKHSEDNWNTMLEGLKKFLE  141 (146)
T ss_dssp             EEEECBCGGGCCCSCGGGSCEEEEEEEECSS-CEEEEEEEEEESSH----HHHHHHHHHHHHHHHHHHHHHG
T ss_pred             EEEEEccCccCCCCCCCCceEEEEEEEEcCC-CeEEEEEEecCCch----hhHhhHHhhHHHHHHHHHHHHh
Confidence            888875320 00 001123467889989764 69999887644311    0111234555666677777764

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=98.84  E-value=2.4e-08  Score=70.84  Aligned_cols=98  Identities=12%  Similarity=0.068  Sum_probs=71.4

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      .+++.+++|+||+++||+++.  |... +++|+|.   +   +++-.+|....+.+. + +   .+.-++..+++ .+.+
T Consensus         8 ~~i~~~~~i~ap~e~Vw~~lt--d~~~-~~~W~~~---~---~~~~~~G~~~~~~~~-~-g---~~~~~v~e~~p-~~~l   72 (143)
T 1xn6_A            8 NDIKQTIVFNASIQKVWSVVS--TAEG-IASWFMP---N---DFVLEVGHEFHVQSP-F-G---PSPCKVLEIDE-PNHL   72 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHTTS--CSHH-HHTTSCC---B---CCCCCTTCEECBCCT-T-C---CCCEEEEEEET-TTEE
T ss_pred             CEEEEEEEEcCCHHHHHHHHh--CHhH-HHHhcCC---C---CcCcCCCCEEEEEEc-C-C---CceEEEEEEeC-CCEE
Confidence            468999999999999999998  8754 7999986   2   244345665555553 3 3   25778898977 5678


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL  123 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~  123 (155)
                      .|+...+        ....++++.|.++|+|.++++.+..+
T Consensus        73 ~~~~~~~--------~~~~~~~l~~~~~g~T~l~~~~~~~~  105 (143)
T 1xn6_A           73 SFSWDTD--------GWVVSFDLKDLGDNKTEFTLIHGGWK  105 (143)
T ss_dssp             EEEETTT--------TEEEEEEEEEEETTEEEEEEEEECCC
T ss_pred             EEEEeCC--------CEEEEEEEEECCCCcEEEEEEEEccC
Confidence            8887433        23568889998776899998877443

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=98.82  E-value=2.1e-07  Score=67.76  Aligned_cols=141  Identities=9%  Similarity=-0.019  Sum_probs=86.1

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCC--cceEEEEcCCCCCceEEEEEecC-CCCCcceEEEEEEEEeCCC
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT--VEEIEVVEGDGGVGTILHIKFKP-GTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~--v~s~e~~eGdg~~GsvR~~~~~~-g~~~~~~~kErl~~~D~~~   79 (155)
                      .+++.+++|+||+++||+++.  |... +++|.+.  +. +...+++-.+|..-.+.+.. + |..-...-++..++ ..
T Consensus        14 ~~i~~~~~i~ap~e~Vw~alt--dp~~-~~~W~~p~~~~-~~~~~~d~~~Gg~~~~~~~~~~-G~~~~~~~~v~e~~-p~   87 (171)
T 2il5_A           14 VEVEIEKLYKFSPELVYEAWT--KKDL-LKQWFMTSART-NKEIEADVKEGGKYRIVDQQRN-GKVNVIEGIYESLV-MD   87 (171)
T ss_dssp             EEEEEEEEESSCHHHHHHHTT--CHHH-HTTTSSSCTTT-EEEEEECCSTTCEEEEEEECGG-GCEEEEEEEEEEEE-TT
T ss_pred             ceEEEEEEeCCCHHHHHHHHC--CHHH-HHhccCCCCcc-ceEEEecccCCCEEEEEEECCC-CCEEEEEEEEEEEc-CC
Confidence            368888999999999999998  8754 7888743  33 22234554556554454432 2 22224677888886 56


Q ss_pred             CeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC--ccc-------CC-chhhHHHHHHHHHHHHHH
Q 031651           80 RVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE--AAA-------NA-SFVSIDTVAKIAEISKNY  149 (155)
Q Consensus        80 ~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~--~~~-------~~-~~~~~~~~~~~~k~~e~~  149 (155)
                      +.+.|+...++.   +-.....++.+.+.++|+|.++++.+..+..+  ...       .. .....+....++..|.+|
T Consensus        88 ~rl~~~~~~~~~---~~~~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~  164 (171)
T 2il5_A           88 EYVKMTIGMPGL---SETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHV  164 (171)
T ss_dssp             TEEEEEESCC-----CCCCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEecCC---CCCcEEEEEEEEECCCCCEEEEEEEEeccCcccccccchhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            778888754432   21135778899998776899999886544311  000       00 011234455667777777


Q ss_pred             Hhh
Q 031651          150 LLN  152 (155)
Q Consensus       150 l~~  152 (155)
                      |-+
T Consensus       165 le~  167 (171)
T 2il5_A          165 IET  167 (171)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            654

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=98.79  E-value=9.6e-07  Score=62.50  Aligned_cols=128  Identities=11%  Similarity=0.105  Sum_probs=82.7

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhh-cCC--cceEEEEcCCCCCceEEEEEecCCCCC-cceEEEEEEEEeCCC
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKE-YDT--VEEIEVVEGDGGVGTILHIKFKPGTPG-FAGYKEKFIEIDNKK   79 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~-~P~--v~s~e~~eGdg~~GsvR~~~~~~g~~~-~~~~kErl~~~D~~~   79 (155)
                      +++.++.|+||+++||+++.  |... +++| .+.  +. +...+++-.+|..-.+.+....|. ...+.-++..+++ .
T Consensus         2 ~i~~~~~i~ap~e~Vw~alt--d~~~-~~~W~~~~~~~~-~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~~v~~~~p-~   76 (142)
T 2lcg_A            2 NITVETTVAAPVGKVWRAYT--TPED-IKQWNAASDDWH-TTAATVDLREGGAFSSRMEAKDGSMGFDFAGTYTKVVE-N   76 (142)
T ss_dssp             EEEEEEEESSCHHHHHHHTT--CHHH-HHHHCCSSTTEE-EEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEET-T
T ss_pred             eEEEEEEeCCCHHHHHHHhC--CHHH-HhcCCCCCCCcc-ceeeEEccccCCEEEEEEEcCCCCceeeeEEEEEEEcC-C
Confidence            57889999999999999998  8754 7898 653  33 222345545666655555321121 2346778888865 6


Q ss_pred             CeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhh
Q 031651           80 RVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        80 ~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                      +.+.|+. .      +   ...++.+.|.++ +|.++++.++.  ..   .......+.....+..|.++|-.
T Consensus        77 ~~l~~~~-~------g---~~~~~~l~~~~~-gT~l~~~~~~~--~~---~~~~~~~~Gw~~~L~~L~~~le~  133 (142)
T 2lcg_A           77 KRIEYAF-G------D---RTAKVEFLEAPQ-GVTVRVSFVAE--TE---YPVEQQQQGWQAILNNFKRHVES  133 (142)
T ss_dssp             TEEEEEE-T------T---EEEEEEEEEETT-EEEEEEEEECC--SS---SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEc-C------C---CEEEEEEEEcCC-CEEEEEEEecC--CH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888886 1      1   467888888874 79999886652  11   11112345556667777777654

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.72  E-value=1e-06  Score=64.37  Aligned_cols=143  Identities=10%  Similarity=0.008  Sum_probs=85.2

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcC-C-cceEEEEcCCCCCceEEEEEecC-CCCCcceEEEEEEEEeCCC
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYD-T-VEEIEVVEGDGGVGTILHIKFKP-GTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P-~-v~s~e~~eGdg~~GsvR~~~~~~-g~~~~~~~kErl~~~D~~~   79 (155)
                      ..++.++.|+||+++||+++.  |... +++|.+ . +.. ...+++-.+|..-.+.+.. + |..-...-++.++++ +
T Consensus        12 ~~i~~~~~i~Ap~e~Vw~alt--dp~~-~~~W~~p~~~~~-~~~~~d~~~Gg~~~~~~~~~~-g~~~~~~~~v~e~~p-~   85 (172)
T 2ldk_A           12 LSFSIVAEFDADVKRVWAIWE--DPRQ-LERWWGPPTWPA-TFETHEFTVGGKAAYYMTGPD-GTKARGWWQFTTIEA-P   85 (172)
T ss_dssp             TEEEEEEEESSCHHHHHHHHH--CHHH-HHTTSSCTTSCE-EEEEECCSTTCEEEEEEECTT-SCEEEEEEEEEEECS-S
T ss_pred             ceEEEEEEeCCCHHHHHHHhC--CHHH-HHhccCCCCccc-ceEEEeecCCCEEEEEEECCC-CCEEeeEEEEEEEcC-C
Confidence            468899999999999999998  7754 678764 3 432 2234554555544444432 2 322346778888854 6


Q ss_pred             CeEEEEEEeCCccCcC---ceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhh
Q 031651           80 RVRVTDVVEGGYLDVG---FTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        80 ~~~~Y~ileg~~~~~~---~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                      +.+.|+....+....+   ......++.+.+.+ ++|.++++-.|.+......-......+....++..|.+||-.
T Consensus        86 ~rl~~~~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~lt~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~  160 (172)
T 2ldk_A           86 DHLEFDDGFADEHGAPVDELGVTHATVKLEPLE-NRTRMTIISTFESEEQMQKMAEMGMEEGMREAIEQIDAVLSE  160 (172)
T ss_dssp             SEEEEEEEEBCSSCCBCTTTCEEEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHTHHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEEEeecCCCCCccCCCccEEEEEEEEEcC-CCEEEEEEEEcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            6777776533211001   12457788888876 479999998764211100000001245566677888888754

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.63  E-value=1.1e-06  Score=64.05  Aligned_cols=141  Identities=10%  Similarity=0.052  Sum_probs=83.9

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCC--cceEEEEcCCCCCceEEEEEec-CCCCCcceEEEEEEEEeCCC
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT--VEEIEVVEGDGGVGTILHIKFK-PGTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~--v~s~e~~eGdg~~GsvR~~~~~-~g~~~~~~~kErl~~~D~~~   79 (155)
                      ..++.++.|+||+++||+++.  |... +++|.+.  .. +...+++-.+|..-.+.+. .+ |..-.+.-++.++++ .
T Consensus        13 ~~i~~~~~i~Ap~e~Vw~alt--dp~~-~~~W~~~~~~~-~~~~~~d~~~Gg~~~~~~~~~~-G~~~~~~g~v~e~~p-~   86 (164)
T 3pu2_A           13 TRLEFRRHFAATPEQLWAALT--SPAL-LPAWLFARGWP-MTECVFEPHKGGLIRQVWTGPE-GRTRGLTGRVILAEP-P   86 (164)
T ss_dssp             TEEEEEEEESSCHHHHHHHHH--CTTT-GGGTSCBTTBC-EEEEEECCSTTCEEEEEEECGG-GCEEEEEEEEEEEET-T
T ss_pred             ceEEEEEEECCCHHHHHHHhc--CHHH-HhhEeCCCCee-eEEEEEeccCCCEEEEEEECCC-CCEEEEEEEEEEEcC-C
Confidence            468889999999999999998  7754 7888753  32 2223455445544344432 22 222256778888855 5


Q ss_pred             CeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhh
Q 031651           80 RVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        80 ~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                      +.+.|+..-.+... +- .-..++.+++.++ +|.++++-+|........-......+.-..++..|++||.+
T Consensus        87 ~rl~~t~~~~~~~~-~~-~s~vt~~l~~~~~-gT~l~l~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~  156 (164)
T 3pu2_A           87 HRLIHSELYDEDWT-GG-ETLVTLQLLPVEG-GTELAMAVDYATPEARDAVAASAMATEMEEAYRHLDVMLAA  156 (164)
T ss_dssp             TEEEEEEBCC---C-CS-CEEEEEEEEEETT-EEEEEEEEECSSTTHHHHHHTSTHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEeccCCCC-CC-CEEEEEEEEEcCC-CEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            67777764211000 11 1467888989865 69999988853211100000012346667778888888765

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=98.62  E-value=5.2e-06  Score=60.15  Aligned_cols=139  Identities=12%  Similarity=0.024  Sum_probs=82.7

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcc--eEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCC
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVE--EIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKR   80 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~--s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~   80 (155)
                      .+++.+.+|+||+++||+++.  |.. .+++|.+...  .+...+++-.+|..-.+.+....|..-.+.-++.++++ .+
T Consensus         8 ~~i~~~r~i~Ap~e~Vw~alt--dp~-~~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p-~~   83 (161)
T 3rd6_A            8 STFTIERTYPQSPDRVFHAFA--DKA-TVRRWRVDGDGFTVAEFSFDFRVGGGEVSRFSYGGGPEVRLDAQFQDIVP-DQ   83 (161)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH--CHH-HHHHHTCCCCC---CEEEECCSTTCEEEEEECSTTSCCEEEEEEEEEEET-TT
T ss_pred             ceEEEEEEECCCHHHHHHHhc--CHH-HHhhccCCCCCceeeEEEEccCcCCEEEEEEECCCCCEEEEEEEEEEEcC-CC
Confidence            467888899999999999998  775 4788884221  11112345445555445543211322246778888865 45


Q ss_pred             eEEEEEEe--CCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651           81 VRVTDVVE--GGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        81 ~~~Y~ile--g~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~  151 (155)
                      .+.|+..-  ++.   +......++++.+.++ +|.++++-+.-...+.  .......+.-..++..|++||.
T Consensus        84 rl~~~~~~~~~~~---~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~--~~~~~~~~GW~~~L~~L~~~le  150 (161)
T 3rd6_A           84 RIVFSYRMAIGPQ---PMSASLTTVELTPSGD-GTRLTYTEQGAFFDGV--DSAKGREEGTRGLLEALAAELQ  150 (161)
T ss_dssp             EEEEEEEEEETTE---EEEEEEEEEEEEEETT-EEEEEEEEEEEEETTC--CCHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEEEEEEecCCCC---CCCceEEEEEEEECCC-CEEEEEEEEecCcchh--hhHHHHHHHHHHHHHHHHHHHh
Confidence            56666542  221   2333567888888865 6999999886533321  1111234555666677776664

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=98.60  E-value=5.6e-06  Score=60.04  Aligned_cols=136  Identities=11%  Similarity=0.058  Sum_probs=81.9

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCc-----ceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeC
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTV-----EEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDN   77 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v-----~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~   77 (155)
                      .+++.+..|+||+++||+++.  |.. .+++|.+..     ..++   ++-.+|..-.+.+....|..-.+.-++.++++
T Consensus         9 ~~i~~~r~i~Ap~e~Vw~alt--dp~-~~~~W~~~~~g~~~~~~~---~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p   82 (162)
T 3q64_A            9 STFIIERLYPAPPSKVFFALG--NAD-AKRRWFTDPDNPMPGRFE---MDFRVGGKEVNAGGPKDGPIHVYTATYQDIVP   82 (162)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH--CHH-HHHHHSSCTTSCCGGGCE---ECCSTTCEEEEEECCTTSCCEEEEEEEEEEET
T ss_pred             ceEEEEEEeCCCHHHHHHHHC--CHH-HHhhcCCCCCCccceEEE---ECCccCCEEEEEEECCCCCEEEEEEEEEEEcC
Confidence            367888899999999999998  875 478888432     2233   34334444445443211322347778888865


Q ss_pred             CCCeEEEEEEe--CCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651           78 KKRVRVTDVVE--GGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        78 ~~~~~~Y~ile--g~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~  151 (155)
                       .+.+.|+..-  ++.   +......++.+.+.++ +|.++++-+.-+..+.  .......+.-..++..|++||.
T Consensus        83 -~~rl~~~~~~~~~~~---~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~--~~~~~~~~GW~~~L~~L~~~le  151 (162)
T 3q64_A           83 -DQRIVYSYDMLFGET---RISVSLATIQLFAEGE-GTRLVLTEQGAFLDGH--DTPSTREHGTGVLLDLLDAFLD  151 (162)
T ss_dssp             -TTEEEEEEEEEETTE---EEEEEEEEEEEEEETT-EEEEEEEEEEEEETTS--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCEEEEEEEecCCCC---CCCceEEEEEEEEcCC-CEEEEEEEEecCccch--hHHHHHHHHHHHHHHHHHHHHh
Confidence             4566666542  221   2333467888888875 6999998876533221  1111234555566666666664

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=98.58  E-value=7.3e-06  Score=58.29  Aligned_cols=129  Identities=13%  Similarity=0.178  Sum_probs=80.6

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhh-cC-C-cceEEEEcCCCCCceEEEEEecCCCCC-cceEEEEEEEEeCCC
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKE-YD-T-VEEIEVVEGDGGVGTILHIKFKPGTPG-FAGYKEKFIEIDNKK   79 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~-~P-~-v~s~e~~eGdg~~GsvR~~~~~~g~~~-~~~~kErl~~~D~~~   79 (155)
                      +++.++.|+||+++||+++.  |... +++| .+ . +. +...+++-.+|..-.+.+....|. .-.+.-++..+++ .
T Consensus         3 ~i~~~~~i~Ap~e~Vw~alt--dpe~-~~~W~~~p~~~~-~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p-~   77 (144)
T 2l8o_A            3 KITVEVTVYAAIEKVWKYWN--EPAH-IMKWCQASPEWH-VPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGVYDQVKT-N   77 (144)
T ss_dssp             SEEEEEEECSCHHHHHHHHH--CHHH-HHHHSTTCTTCE-EEEEECCCSTTCEEEEEEECTTSSCEEEEEEEEEEEET-T
T ss_pred             EEEEEEEECCCHHHHHHHHC--CHHH-HhhccCCCCCcc-cceeEEccCCCCEEEEEEECCCCCceeeeeEEEEEEeC-C
Confidence            57889999999999999998  8754 7888 64 3 33 222445644554434444321132 1246778888865 6


Q ss_pred             CeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhh
Q 031651           80 RVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        80 ~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                      +.+.|+. .|.        ...++++.+.+ ++|.++.+.++ +  .  ........+....++..|++||-.
T Consensus        78 ~~l~~~~-~g~--------~~v~~~l~~~~-~gT~l~~~~~~-~--~--~~~~~~~~~Gw~~~L~~L~~~le~  135 (144)
T 2l8o_A           78 DLIEYTI-GDG--------RKVRIVFTHTG-DTTNIVESFDP-E--E--TNPRELQQSGWQAILNSFKSYTEN  135 (144)
T ss_dssp             TEEEEEE-TTC--------CEEEEEEEECS-SSEEEEEEECC-C--S--SSCHHHHHHHHHHHHHHHHHHHGG
T ss_pred             CEEEEEe-CCC--------eEEEEEEEEcC-CCEEEEEEEeC-C--C--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6788885 221        35688888876 47888877554 1  1  111112345566677777777754

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.53  E-value=2.2e-06  Score=62.87  Aligned_cols=140  Identities=14%  Similarity=0.065  Sum_probs=83.1

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhc-CC-cceEEEEcCCCCCceEEEEEec-CCCCCcceEEEEEEEEeCCC
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DT-VEEIEVVEGDGGVGTILHIKFK-PGTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~-P~-v~s~e~~eGdg~~GsvR~~~~~-~g~~~~~~~kErl~~~D~~~   79 (155)
                      .+++.+.+++||+++||+++-  |.. .+.+|. |. ... ...+.|-.+|..-.+.+. ++ |..-.+.-++.++++ .
T Consensus        13 ~~i~~~r~i~Ap~e~Vw~a~T--dpe-~l~~W~~p~~~~~-~~~~~d~r~GG~~~~~~~~~~-G~~~~~~g~~~ev~p-~   86 (168)
T 3uid_A           13 LTLTITAEFAAPVTRIWQIYA--DPR-QLEKVWGPPSHPA-TVVDHDLRPGGRVTYFMTGPD-GEKYAGYWEITAVDE-P   86 (168)
T ss_dssp             TEEEEEEEESSCHHHHHHHHH--SHH-HHHHHHCCTTSCC-EEEEECCSTTCEEEEEEECTT-SCEEEEEEEEEEEET-T
T ss_pred             CEEEEEEEEcCCHHHHHHHhC--CHH-HHhhEeCCCCeee-eEEEEcccCCcEEEEEEECCC-CCEEeeEEEEEEEeC-C
Confidence            367888999999999999998  764 467775 44 332 223455344443334432 22 322246778888865 4


Q ss_pred             CeEEEEEEe----CCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCc---hhhHHHHHHHHHHHHHHHhh
Q 031651           80 RVRVTDVVE----GGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANAS---FVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        80 ~~~~Y~ile----g~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~---~~~~~~~~~~~k~~e~~l~~  152 (155)
                      +.+.|+..-    |.+.. ....-..++++.+.+ ++|.++.+..|....   ..+.   ....+.-...+..|++||.+
T Consensus        87 ~rlv~t~~~~~~~g~p~~-~~~~s~vt~~l~~~~-~gT~lt~~~~~~~~~---~~~~~~~~g~~~GW~~~L~~L~~~l~~  161 (168)
T 3uid_A           87 HSFSFLDGFADEDFNPNT-DLPVSTNVYTFTEHD-GGTRATYVGTYASAE---ALQQVLDMGVIEGASSAINQIDALLTA  161 (168)
T ss_dssp             TEEEEEEEEECTTSCBCS-SCCCEEEEEEEEEET-TEEEEEEEEECSCHH---HHHHHHHTTHHHHHHHHHHHHHHHTCS
T ss_pred             cEEEEEEeeccCCCCcCC-CCCcEEEEEEEEECC-CCEEEEEEEecCCHH---HHHHHHHhcHHHHHHHHHHHHHHHHHh
Confidence            566666532    32211 011246788898886 579998886542211   1110   01346667788889998876


Q ss_pred             C
Q 031651          153 N  153 (155)
Q Consensus       153 ~  153 (155)
                      .
T Consensus       162 ~  162 (168)
T 3uid_A          162 T  162 (168)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.53  E-value=1.1e-06  Score=64.50  Aligned_cols=140  Identities=9%  Similarity=-0.034  Sum_probs=81.6

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcC-C-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCC
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYD-T-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKR   80 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P-~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~   80 (155)
                      .+++.+++|+||+++||+++.  |... +++|.+ . +.. ...+++-.+|..-.+.+....|..-.+.-++..+++ .+
T Consensus        10 ~~i~~~r~i~Ap~e~Vw~alt--dp~~-~~~W~~p~~~~~-~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p-~~   84 (178)
T 1xfs_A           10 LDLMLKRELAVPVNLVWRGLT--EPEL-LKKWFVPKPWSI-SDCRVDLRPGGEFYTVMQDPEGNKFPNSGCFLEVTD-EK   84 (178)
T ss_dssp             TEEEEEEEESSCHHHHHHHHH--CHHH-HTTTSSCTTCEE-EEEEECCSTTCEEEEEEECTTCCEEEEEEEEEEEET-TT
T ss_pred             ceEEEEEEecCCHHHHHHHhC--CHHH-HhhCCCCCCeee-eEEEEeeECCcEEEEEEECCCCCEEEEEEEEEEEeC-CC
Confidence            468889999999999999998  8754 788864 3 432 223455456665555553211322346778888865 56


Q ss_pred             eEEEEEEeCC---ccCc------Cc--eEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHH
Q 031651           81 VRVTDVVEGG---YLDV------GF--TLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEIS  146 (155)
Q Consensus        81 ~~~Y~ileg~---~~~~------~~--~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~  146 (155)
                      .+.|+..-++   +...      +.  .....++++.+.++ +|.++++.+|....   ..+..   ...+....++..|
T Consensus        85 rl~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~~~---~~~~~~~~~~~~Gw~~~l~~L  160 (178)
T 1xfs_A           85 RLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSS-GTRYTACAMHNTPG---QRKLHEEMGFHEGWGTTITQL  160 (178)
T ss_dssp             EEEEESSEEGGGEECCC-----------CCEEEEEEEECSS-SEEEEEEEECSSHH---HHHHHHTTTHHHHHHHHHHHH
T ss_pred             EEEEEEEEcCCCCccccccccccccccccEEEEEEEEECCC-CEEEEEEEEcCCHH---HHHHHHhhhHHHHHHHHHHHH
Confidence            6777763211   1100      00  02467888888764 79999888753211   00100   1134455566666


Q ss_pred             HHHHh
Q 031651          147 KNYLL  151 (155)
Q Consensus       147 e~~l~  151 (155)
                      .+||-
T Consensus       161 ~~~le  165 (178)
T 1xfs_A          161 EELLK  165 (178)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=98.51  E-value=5.8e-07  Score=64.89  Aligned_cols=133  Identities=15%  Similarity=0.056  Sum_probs=81.7

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      .+++.+++|+||+++||+++.  |... +++|+|.....+     -.+|..-.+.+. | +.  .+..++.++++ ++.+
T Consensus         9 ~~i~~~~~i~Ap~e~Vw~alt--dp~~-~~~W~~~~~~~~-----~~~Gg~~~~~~~-g-~~--~~~~~v~e~~p-~~~l   75 (160)
T 2lak_A            9 FVVRREAHLAAPPAAVFALMT--DPEK-ILRWMGTEAEVE-----PEPGGLYLVNVT-G-AR--FARGSFREVVP-VHRL   75 (160)
T ss_dssp             CEEEEEEEESSCHHHHHHHHH--CHHH-HHHTSCSSEEES-----CSTTCCEEECSS-T-TC--CSSCCEEEEET-TTEE
T ss_pred             ceEEEEEEeCCCHHHHHHHhc--ChHH-HhhhCCCcceee-----ccCCCEEEEEEe-C-Cc--eEEEEEEEEcC-CCEE
Confidence            578899999999999999999  8754 789987643332     233433335544 3 21  45567888865 6678


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhC
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN  153 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~  153 (155)
                      .|+...++....+-.....++++.|.++ +|.++|+.+-.+  +.  .......+....++..|.++|-..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~--~~--~~~~~~~~gw~~~L~~Lk~~le~~  141 (160)
T 2lak_A           76 AYSFGWDGSEVVPPGSSLVEIDLIEQGG-GTLLRLTHSGLP--SA--EQCAGHEEGWAHYLGRLTEVAAGR  141 (160)
T ss_dssp             EECCCCCSSSCCCTTSCEEEEEEEECSS-SEEEEEEEECCC--SH--HHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             EEEEEecCCCCCCCCcEEEEEEEEECCC-CEEEEEEEeCCC--CH--HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8876433210001123467889988764 799998866211  11  001123445566777777777543

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.49  E-value=3.8e-06  Score=59.80  Aligned_cols=95  Identities=14%  Similarity=0.174  Sum_probs=67.9

Q ss_pred             cceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            2 KGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         2 ~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      ..+++.+++|+||+++||+++.  |... +++|+|..      +++-.+|..-.+.+ +. |   .+.-++..+++ .+.
T Consensus         4 ~~~i~~~~~i~Ap~e~Vw~alt--d~~~-~~~W~~~~------~~~~~~Gg~~~~~~-~~-g---~~~~~v~e~~p-~~~   68 (146)
T 1xn5_A            4 LPDIKKEVRFNAPIEKVWEAVS--TSEG-LAFWFMEN------DLKAETGHHFHLQS-PF-G---PSPCQVTDVER-PIK   68 (146)
T ss_dssp             CCCEEEEEEESSCHHHHHHHTT--SHHH-HHTTSCCB------CCCSCTTCEEEEEC-SS-C---EEEEEEEEEET-TTE
T ss_pred             CcEEEEEEEEcCCHHHHHHHHh--ChhH-HHHhcCCC------CCCccCCCEEEEEe-cC-C---ceEEEEEEEeC-CcE
Confidence            3578999999999999999998  8754 78998752      24434566555555 33 3   47888999975 567


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEE
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIE  120 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~  120 (155)
                      +.|+.. +.    .   ...++++.+.++ +|.++++.+
T Consensus        69 l~~~~~-~~----~---~~~~~~l~~~~~-gT~l~~~~~   98 (146)
T 1xn5_A           69 LSFTWD-TD----G---WSVTFHLKEEEN-GTIFTIVHS   98 (146)
T ss_dssp             EEEEET-TT----T---EEEEEEEEECSS-SEEEEEEEE
T ss_pred             EEEEEe-CC----C---EEEEEEEEEcCC-CEEEEEEEE
Confidence            888874 21    1   256888888765 688888755

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=98.49  E-value=6.9e-06  Score=58.72  Aligned_cols=140  Identities=9%  Similarity=-0.103  Sum_probs=79.4

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCC--cceEE--EEcCCCCCceEEEEEecCCCCCcceEEEEEEEEe
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT--VEEIE--VVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEID   76 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~--v~s~e--~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D   76 (155)
                      |. +++.+++|+||+++||+++.  |... +.+|.+.  +. +.  ..+.+-.+|..-.+.+....|..-.+.-++.+++
T Consensus         1 M~-~i~~~r~i~Ap~e~Vw~alt--dp~~-~~~W~~~~~~~-~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~   75 (152)
T 3eli_A            1 MA-DLRLEREFAVAPEALFAWVS--DGAK-LLQWWGPEGLH-VPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVK   75 (152)
T ss_dssp             -C-EEEEEEEESSCHHHHHHHTT--CHHH-HHHHCSSTTCB-CCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEE
T ss_pred             Cc-eEEEEEEECCCHHHHHHHHc--CHHH-HhhccCCCCcc-cccceeEEcccCCcEEEEEEECCCCCEEEEEEEEEEEc
Confidence            54 78999999999999999998  7754 7888753  22 11  1234434555444554321132235677888886


Q ss_pred             CCCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651           77 NKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        77 ~~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~  151 (155)
                      + .+.+.|+....+....+-.....++.+.+.++ +|.++++-.  .....  .......+.-..++..|++||.
T Consensus        76 p-~~~l~~~~~~~~~~~~~~~~~~v~~~l~~~~~-gT~l~l~~~--~~~~~--~~~~~~~~GW~~~L~~L~~~l~  144 (152)
T 3eli_A           76 P-PQSVGFTWGWHDDDDRRGAESHVMFIVEPCAK-GARLILDHR--ELGDD--EMSLRHEEGWTSSLRKLAAELA  144 (152)
T ss_dssp             T-TTEEEEEEEEECTTSCEEEEEEEEEECCBC---CEEEEEEEE--SCSCH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCEEEEEEeecCCCCCCCCcEEEEEEEEECCC-CEEEEEEEc--cCCCH--HHHHHHHHHHHHHHHHHHHHHh
Confidence            5 56677776432211101233467788888765 588776532  11111  1111234566677777777764

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=98.48  E-value=2.2e-05  Score=57.27  Aligned_cols=137  Identities=9%  Similarity=0.014  Sum_probs=84.2

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhc-CC----cceEEEEcCCCCCceEEEEEec-CCCCCcceEEEEEEEEe
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DT----VEEIEVVEGDGGVGTILHIKFK-PGTPGFAGYKEKFIEID   76 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~-P~----v~s~e~~eGdg~~GsvR~~~~~-~g~~~~~~~kErl~~~D   76 (155)
                      .+++.+.+|+||+++||+++.  |.. .+.+|. |.    +..++   ++-.+|..-.+.+. .+ |..-.+.-++.+++
T Consensus         9 ~~i~~~r~i~Ap~e~Vw~a~T--dpe-~l~~W~~~~~~~~~~~~~---~d~~~GG~~~~~~~~~~-G~~~~~~g~v~ev~   81 (166)
T 3put_A            9 TTFVIERRLTAPVARVFRAWS--TPE-SKRQWFACHGEWVPLEYA---LDFRPGGTERNYTADTD-GLLHAYDARYIDIV   81 (166)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH--CHH-HHHHHHTCC---CCSEEE---ECCSTTCEEEEEEECTT-SCEEEEEEEEEEEE
T ss_pred             ceEEEEEEECCCHHHHHHHhC--CHH-HHHhcCCCCCCceeeEEE---eCcccCCEEEEEEECCC-CCEEEEEEEEEEEc
Confidence            468888999999999999998  764 477887 32    22333   44334433334432 22 32224677888886


Q ss_pred             CCCCeEEEEEEe--CCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhC
Q 031651           77 NKKRVRVTDVVE--GGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN  153 (155)
Q Consensus        77 ~~~~~~~Y~ile--g~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~  153 (155)
                      + .+.+.|+..-  ++.   +...-..++.+.+.+ ++|.++.+-+..+..+....+  ...+.-..++..|.+||-..
T Consensus        82 p-~~rlv~t~~~~~~~~---~~~~s~vt~~l~~~~-~gT~ltl~~~~~~~~~~~~~~--~~~~GW~~~L~~L~~~le~~  153 (166)
T 3put_A           82 P-DTRIIYAYEMKLGQT---RISASLVTVAFDVEP-SGTRMVFTEQVVFLDGYGDNG--ARLQGTEIGLDNLELFLVRE  153 (166)
T ss_dssp             T-TTEEEEEEEEEETTE---EEEEEEEEEEEEECS-SSEEEEEEEEEEEETTCCCTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CcEEEEEEEecCCCC---CCCceEEEEEEEECC-CCEEEEEEEEecCccchhhHH--HHHHHHHHHHHHHHHHHhcC
Confidence            5 4556666532  221   233346788888876 579999887766433211111  24566677778888887643

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.46  E-value=4.3e-06  Score=61.36  Aligned_cols=138  Identities=11%  Similarity=0.016  Sum_probs=80.1

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcC-C-cceEEEEcCCCCCceEEEEEec-CCCCCcceEEEEEEEEeCCC
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYD-T-VEEIEVVEGDGGVGTILHIKFK-PGTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P-~-v~s~e~~eGdg~~GsvR~~~~~-~g~~~~~~~kErl~~~D~~~   79 (155)
                      .+++.++.|+||+++||+++.  |... +++|++ . +.. ...+++-.+|..-.+.+. .+ |..-...-++.++++ .
T Consensus        16 ~~i~~~~~i~Ap~e~Vw~a~t--dpe~-~~~W~~p~~~~~-~~~~~d~~~Gg~~~~~~~~~~-G~~~~~~g~v~e~~p-~   89 (175)
T 2lf2_A           16 KTITIKREFAAVRAIVWEAFT--RAEI-LDQWWAPKPWKA-KTKSMDFKEGGTWLYAMVGPN-GEEHWSICEYAIIKP-I   89 (175)
T ss_dssp             TEEEEEEEESSCHHHHHHHHT--CHHH-HHHSSSSSSSEE-EEEEECCSTTCEEEEEEECSS-SCEEEEEEEECCCCS-S
T ss_pred             ceEEEEEEEcCCHHHHHHHhC--CHHH-HhhCcCCCCccc-eEEEEeccCCCEEEEEEECCC-CCEEEeEEEEEEEcC-C
Confidence            468889999999999999998  8754 788864 3 432 223455445544444443 22 322246778888855 5


Q ss_pred             CeEEEEEEeC----CccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHHh
Q 031651           80 RVRVTDVVEG----GYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        80 ~~~~Y~ileg----~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l~  151 (155)
                      +.+.|+.--+    .+.. .......++++++.+ ++|.++.+..|.+.   ..-+..   ...+....++..|.+||-
T Consensus        90 ~rl~~t~~~~~~~g~p~~-~~~~~~v~~~l~~~~-~gT~l~~~~~~~~~---~~~~~~~~~~~~~Gw~~~L~~L~~~le  163 (175)
T 2lf2_A           90 ERFTGKDGFTDASGKLNT-EMPRSNWDMRFIDKG-EITEVQYHISYDDV---AQLEATIQMGFKEGITMAMENLDELLV  163 (175)
T ss_dssp             SEEEEEEEEESSTTCCCT-TSCCEEEEEEEEEET-TEEEEEEEEECSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEecCCCCCcCC-CCCcEEEEEEEEECC-CCEEEEEEEecCCH---HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            5677765422    2210 011346788888876 47888887664211   000100   013445566677777764

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.43  E-value=3.1e-05  Score=54.97  Aligned_cols=128  Identities=11%  Similarity=0.069  Sum_probs=79.0

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhh-cC-C-cceEEEEcCCCCCceEEEEEec-CCCCC-cceEEEEEEEEeCC
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKE-YD-T-VEEIEVVEGDGGVGTILHIKFK-PGTPG-FAGYKEKFIEIDNK   78 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~-~P-~-v~s~e~~eGdg~~GsvR~~~~~-~g~~~-~~~~kErl~~~D~~   78 (155)
                      +++.+++|+||+++||+++.  |... +++| ++ . +. +...+++-.+|..-.+.+. .+ |. .-.+.-++.++++ 
T Consensus         2 ~i~~~~~i~Ap~e~Vw~alt--dp~~-~~~W~~~p~~~~-~~~~~~d~~~Gg~~~~~~~~~~-G~~~~~~~g~v~e~~p-   75 (144)
T 2lgh_A            2 KISIEAHIEQEIEAVWWAWN--DPDC-IARWNAASSDWH-TTGSRVDLVVGGRFCHHMAAKD-GSAGFDFTGTFTRVEA-   75 (144)
T ss_dssp             EEEEEEEESSCHHHHHHHHH--CHHH-HTTSSSCSTTEE-EEEEEECCSTTCEEEEEEEETT-SSCEEEEEEEEEEEET-
T ss_pred             EEEEEEEeCCCHHHHHHHhC--CHHH-HhccCCCCCCcc-cceEEECCCCCCEEEEEEECCC-CCceEEeEEEEEEEeC-
Confidence            47888999999999999998  8754 7888 64 3 42 2223345334444334433 22 32 1235678888864 


Q ss_pred             CCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhh
Q 031651           79 KRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        79 ~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                      .+.+.|+. .|.        ...++++.+.+ ++|.++.+.++.  ..   .......+....++..|.+||..
T Consensus        76 ~~~l~~~~-~~~--------~~~~~~l~~~~-~gT~l~~~~~~~--~~---~~~~~~~~Gw~~~L~~L~~~le~  134 (144)
T 2lgh_A           76 PTRLSFVM-DDG--------REVDVQFASEP-GGTWVQETFDAE--TS---HTPAQQQAGWQGILDNFKRYVEA  134 (144)
T ss_dssp             TTEEEEEE-TTC--------CEEEEEEEEET-TEEEEEEEEECC--TT---SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEe-cCC--------cEEEEEEEEcC-CCEEEEEEEECC--CH---HHHHHHHHHHHHHHHHHHHHHhh
Confidence            67888885 231        25688888876 478887776552  11   11112345566677777777754

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.43  E-value=9.3e-06  Score=56.82  Aligned_cols=125  Identities=10%  Similarity=0.121  Sum_probs=79.1

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      +++.++.|+||+++||+++.  |... +++|.+.  .   .+++-.+|..-.+.+... +  ....-++..+++ ++.+.
T Consensus         2 ~i~~~~~i~ap~e~Vw~alt--d~~~-~~~W~~~--~---~~~~~~~Gg~~~~~~~~~-~--~~~~~~v~~~~p-~~~l~   69 (135)
T 3q6a_A            2 DIITKMQVDVPRETVFEAFV--DPEK-IGGFWFS--S---SSERWEQGKTITLRYEEY-D--AELNINIERVED-NQLIA   69 (135)
T ss_dssp             CEEEEEEESSCHHHHHHHHH--CTTT-GGGTSSS--E---ESSCCCTTCEEEEECGGG-T--C-CEEEEEEEET-TTEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHc--CHHH-hcccCCC--C---CcccccCCCEEEEEEcCc-C--ceEEEEEEEEcC-CCEEE
Confidence            48899999999999999998  8755 7898763  2   245545666655665432 1  134446777855 46788


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhC
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN  153 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~  153 (155)
                      |+...|          ..++++.+.+ ++|.++++-...+..+  ........+.-..++..|.+||-..
T Consensus        70 ~~~~~g----------~~~~~l~~~~-~gT~l~~~~~~~~~~~--~~~~~~~~~GW~~~l~~L~~~le~g  126 (135)
T 3q6a_A           70 FTWGAH----------PITIQFEESE-AGTVVTTTEKDFDTQD--VKQLLGQKEGWVYMLSCLKVYLEHG  126 (135)
T ss_dssp             EEETTE----------EEEEEEEEET-TEEEEEEEECCCCSSC--HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEcCC----------eEEEEEEECC-CCEEEEEEEcCCCcch--HHHHhhchhCHHHHHHHHHHHHhcC
Confidence            887421          6788888865 5788887744322111  0000123455566777888877543

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.36  E-value=4.6e-06  Score=60.44  Aligned_cols=138  Identities=9%  Similarity=0.042  Sum_probs=81.9

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcC-C-cceEEEEcCCCCCceEEEEEec-CCCCCcceEEEEEEEEeCCC
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYD-T-VEEIEVVEGDGGVGTILHIKFK-PGTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P-~-v~s~e~~eGdg~~GsvR~~~~~-~g~~~~~~~kErl~~~D~~~   79 (155)
                      .+++.+++|+||+++||+++.  |... +++|.+ . +. +...+++-.+|..-.+.+. .+ |.. .+.-++.++++ +
T Consensus         8 ~~i~~~~~i~Ap~e~Vw~a~t--dpe~-~~~W~~p~~~~-~~~~~~d~~~Gg~~~~~~~~~~-G~~-~~~g~v~e~~p-~   80 (164)
T 2l9p_A            8 NKIIFTRTFSAPINKVFDAYT--KREL-FEQWFHPQDAS-VTVYDFNATKGGSAFYAIQAPQ-MIS-YTIAEYLQVDA-P   80 (164)
T ss_dssp             SEEEECCEESSCHHHHHHHHH--CHHH-HTTTCCCTTCE-EEEEECCCSTTEEEEEEEEETT-EEE-EEEEEESCCBT-T
T ss_pred             ceEEEEEEeCCCHHHHHHHhC--CHHH-HHhccCCCCce-eeEEEEeccCCCEEEEEEECCC-CCE-EEEEEEEEEcC-C
Confidence            468888999999999999998  8754 778864 3 43 2224566455554444433 22 221 27778888865 5


Q ss_pred             CeEEEEEEeCC----ccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHHhh
Q 031651           80 RVRVTDVVEGG----YLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        80 ~~~~Y~ileg~----~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l~~  152 (155)
                      +.+.|+...++    +.. .......++++.+.+ ++|.++.+..|....   ..+..   ...+....++..|++||.+
T Consensus        81 ~rl~~t~~~~~~~g~p~~-~~~~~~v~~~l~~~~-~gT~l~~~~~~~~~~---~~~~~~~~~~~~Gw~~~L~~L~~~le~  155 (164)
T 2l9p_A           81 YYIEYLDYFATSKGEKDT-SMPGMHITLNFEEVK-GKTTVTSTSTFPTES---AAQQAIDMGVETGMNSTLNQLEKLLNQ  155 (164)
T ss_dssp             TEEEEEEEEEBTTBSCCS-SSCCEEEEEEECCCS-SSEEEEEEEECSSTT---HHHHHHHHTHHHHHHHHHHHHHHHHHS
T ss_pred             CEEEEEEEecCCCCCccC-CCCceEEEEEEEECC-CCEEEEEEEEcCCHH---HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            66777764321    110 011246788888875 478888886643211   00110   1244556677778777754

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=98.35  E-value=2e-05  Score=58.72  Aligned_cols=122  Identities=9%  Similarity=0.081  Sum_probs=77.0

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      +++.+++|+||+++||+++.  |.. .+++|+|.....++     .+|..-.+.+.+     ....-++..+++. +.+.
T Consensus        37 ~i~~~~~i~Ap~e~VW~alt--dp~-~l~~W~~~~~~~d~-----~~Gg~~~~~~~~-----~~~~~~v~e~~p~-~rl~  102 (184)
T 2nn5_A           37 YFGTERAISASPQTIWRYLT--ETD-KLKQWFPELEIGEL-----GVNGFWRFILPD-----FEETMPFTDYAEE-KYLG  102 (184)
T ss_dssp             EEEEEEEESSCHHHHHHHHH--CHH-HHHHHCTTEEEEEC-----STTCEEEEEETT-----EEEEEEEEEEETT-TEEE
T ss_pred             EEEEEEEeCCCHHHHHHHHc--CHH-HHHHhCCCcccccc-----CCCCEEEEEEeC-----CCceEEEEEecCC-CEEE
Confidence            57888999999999999998  875 48999986433332     233333344432     1356688888654 5677


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhh
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                      |+.- +         ...++++.+..+++|.++++-.|. .+- +...+ ...+....++..|.++|-.
T Consensus       103 ~~~~-~---------~~v~~~l~~~~~~gT~l~~~~~~~-~g~-~~~~~-~~~~GW~~~L~~Lk~~le~  158 (184)
T 2nn5_A          103 VTWD-T---------GIIYFDLKEQAPHQTLLVFSESLP-ENF-TTPRH-KDIAGWSIVLNRLKQVVET  158 (184)
T ss_dssp             EEET-T---------EEEEEEEEEEETTEEEEEEEEEEC-TTC-SSCHH-HHHHHHHHHHHHHHHHHHC
T ss_pred             EEEc-C---------eEEEEEEEECCCCCEEEEEEEecc-CCc-cchhh-HHHHHHHHHHHHHHHHHhc
Confidence            7662 1         356888888334579999884432 211 01111 2345666777888888754

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=98.31  E-value=2.1e-05  Score=56.30  Aligned_cols=130  Identities=11%  Similarity=-0.020  Sum_probs=78.9

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      .+++.++.|+||+++||+++.  |.. .+++|.|.   +   +++-.+|..-.+....+ +   .+.-++.++++ .+.+
T Consensus         9 ~~i~~~~~i~Ap~e~Vw~alt--dp~-~~~~W~~~---~---~~~~~~Gg~~~~~~~~g-~---~~~g~v~e~~p-~~~l   74 (151)
T 3q63_A            9 RTVVVERQISHPPEKLWRALT--QPH-LIEEWLMK---N---DFKPAVGHRFNISADWG-G---VLDCEVLAVEP-NKTL   74 (151)
T ss_dssp             CEEEEEEEESSCHHHHHHHHH--CHH-HHHHHSCE---E---CCCSSTTCEEEEECTTS-C---EEEEEEEEEET-TTEE
T ss_pred             CeEEEEEEeCCCHHHHHHHHc--CHH-HHHhhcCc---C---CCccCCCCEEEEECCCC-C---EEEEEEEEEeC-CCEE
Confidence            478899999999999999998  775 47899873   2   34434555544442222 2   57778888865 5677


Q ss_pred             EEEEEeCC--ccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651           83 VTDVVEGG--YLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        83 ~Y~ileg~--~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~  151 (155)
                      .|+...++  +.....  -..++++.+.++ +|.++++-...+..+  ...-....+.-..++..|.+||-
T Consensus        75 ~~~~~~~~~~~~~~~~--s~v~~~l~~~~~-gT~l~l~~~g~~~~~--~~~~~~~~~GW~~~L~~L~~~le  140 (151)
T 3q63_A           75 SYTWNLAHQDPAFDLR--SVVTFTLTPTPT-GTHLRMEQSGFRPDQ--RRAYGGAKMGWPQFFEKLEQLLD  140 (151)
T ss_dssp             EEECBBCCSSTTTCBC--CEEEEEEEECSS-SEEEEEEEECCCTTC--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEecCCCCCCCCCC--eEEEEEEEEcCC-CEEEEEEEeCCCcch--HHHHHhhhhCHHHHHHHHHHHHh
Confidence            77775332  111112  256788888875 688887755322111  00001123455566677777764

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=98.23  E-value=3.1e-05  Score=56.45  Aligned_cols=96  Identities=13%  Similarity=0.091  Sum_probs=59.2

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCC-eE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKR-VR   82 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~-~~   82 (155)
                      ..+.+++|++|+++||+.++  |+.+ +|.|+|+++++ +. .+   ++-+... ....|   .++=+.+. |.+-. ..
T Consensus        28 ~~~~si~I~ap~eeVy~~~~--D~e~-lP~W~~~l~~~-~~-~~---~~~w~a~-~~p~G---~v~v~~~~-~~~~gv~d   94 (156)
T 2qpv_A           28 SRIIHLSVEKPWAEVYDFAA--NPGN-MPRWAAGLAGG-LE-AD---GEDWIAK-GGPLG---EVRVNFAP-HNEFGVID   94 (156)
T ss_dssp             EEEEEEEESSCHHHHHHHHH--CGGG-GGGTCGGGTTC-CE-EE---TTEEEEE-CSSSC---EEEEEECC-CCSSCBCC
T ss_pred             ceEEEEEEcCCHHHHHHHHH--Chhh-HHHHHHhhhhh-cc-cC---CCcEEEe-ccCCC---cEEEEEec-CCCceEEE
Confidence            57899999999999999999  9987 89999998775 22 22   1222233 12213   34333332 22112 23


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEE
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI  119 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~  119 (155)
                      .|..+.++..      ....+++.|.++ ||.|+|+.
T Consensus        95 ~~~~l~~g~~------~~~~~rv~p~g~-GTeV~~tl  124 (156)
T 2qpv_A           95 HVVTLPDGLK------VYNALRVTPNGS-GTEVSFTL  124 (156)
T ss_dssp             EEEECTTSCE------EEEEEEEEEETT-EEEEEEEE
T ss_pred             EEEecCCCcE------EEEEEEEEeCCC-CEEEEEEE
Confidence            4555443321      234678888765 69999998

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=98.21  E-value=1.5e-06  Score=62.34  Aligned_cols=94  Identities=11%  Similarity=0.093  Sum_probs=64.3

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      .+++.+++|+||+++||+++.  |... +++|++.      .+++-.+|..-.+.+. . |   .+.-++..+++ ++.+
T Consensus        10 ~~i~~~~~i~Ap~e~Vw~alt--d~~~-~~~W~~~------~~~~~~~Gg~~~~~~~-~-g---~~~~~v~e~~p-~~~l   74 (152)
T 2kew_A           10 PDITKSITLEAPIQKVWETVS--TSEG-IAKWFMP------NDFQLKEGQEFHLQSP-F-G---PSPCKVLAVQA-PTEL   74 (152)
T ss_dssp             CCEEEEEEECSCHHHHHHHSS--SSHH-HHHHHCS------CCCCSCSSCCBCSSSS-C-C---SCCBEEEEEET-TTEE
T ss_pred             cEEEEEEEECCCHHHHHHHHh--CHHH-HHHhcCC------CCCCCCCCCEEEEEec-C-C---ceEEEEEEEeC-CcEE
Confidence            468999999999999999998  8754 7899875      1344345554444442 2 3   25667888866 4678


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEE
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIE  120 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~  120 (155)
                      .|+...+        ....++++.|.++ +|.++++-+
T Consensus        75 ~~~~~~~--------~~~~~~~l~~~~~-gT~l~~~~~  103 (152)
T 2kew_A           75 SFEWDTE--------GWVVTFQLEDLGE-KTGFTLIHS  103 (152)
T ss_dssp             EEECTTS--------CCEEEEEEECCSS-CEEEEEEEC
T ss_pred             EEEEccC--------CEEEEEEEEECCC-CEEEEEEEE
Confidence            8876432        1256888888765 588887644

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=98.18  E-value=8.6e-05  Score=53.90  Aligned_cols=130  Identities=13%  Similarity=0.102  Sum_probs=73.5

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      ..++.+.+++||+++||+++-  |.. .+.+|.+. ...+++     .+|..  +.+..|     .+.=++.++++ .+.
T Consensus        19 ~~i~~~r~~~ap~e~Vw~A~T--dpe-~l~~W~~g~~~~~d~-----~~GG~--~~~~~G-----~~~g~v~ev~p-~~r   82 (158)
T 3ni8_A           19 MSFEITEEYYVPPEVLFNAFT--DAY-TLTRLSRGSLAEVDL-----KVGGK--FSLFSG-----SILGEFTEITK-PHK   82 (158)
T ss_dssp             CCEEEEEEESSCHHHHHHHHH--CHH-HHHHHTTTSCCEECC-----STTCE--EEETTT-----TEEEEEEEEET-TTE
T ss_pred             ceEEEEEEECCCHHHHHHHhc--CHH-HHHhhcCCCccEEEc-----cCCCE--EEEecC-----CEEEEEEEEeC-CcE
Confidence            468889999999999999998  764 47888873 333332     23322  333333     35567777865 455


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCC--chhhHHHHHH-HHHHHHHHH
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANA--SFVSIDTVAK-IAEISKNYL  150 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~--~~~~~~~~~~-~~k~~e~~l  150 (155)
                      +.|+.--.+.....++  ..++.+.+.++++|.++.+-+-.+..+....+  .....+.-.. ++..|.+||
T Consensus        83 lv~tw~~~~~~~~~~s--~vt~~l~~~~~~~T~ltl~~~g~~~~~~~~~~~~~~~~~~GW~~~~L~~Lk~~L  152 (158)
T 3ni8_A           83 IVEKWKFRDWNECDYS--TVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVIL  152 (158)
T ss_dssp             EEEEEEETTSCSSCCE--EEEEEEEEEETTEEEEEEEEECCCSSCTTCCCCHHHHHHHHHHHTHHHHHHHTS
T ss_pred             EEEEEEecCCCCCCcE--EEEEEEEecCCCCEEEEEEEEccCchhhhccchhHHHHHhChhHHHHHHHHHHh
Confidence            6655432221111232  56888888655678887765432322211111  1112344445 567777765

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=98.05  E-value=0.0011  Score=48.63  Aligned_cols=140  Identities=7%  Similarity=-0.015  Sum_probs=83.5

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCC-CCc-ceEEEEEEEEeCCCCe
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGT-PGF-AGYKEKFIEIDNKKRV   81 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~-~~~-~~~kErl~~~D~~~~~   81 (155)
                      .+..+..|++|++++|+++.  |... .|+|.|.+.++++++-+++ -.+-.+.+...- ... ..+-.+-...|.+ .+
T Consensus        28 ~~k~~~~v~~s~~~v~~~l~--D~~~-~~~W~~~~~~~~vle~~~~-~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~-g~  102 (189)
T 3qsz_A           28 EFRGEVRLKAAADDVVKVLR--DANA-FRQWMPDVAASELLKATDT-EQYHYLDNSAPWPVSNRDGVYHFTYEKAGD-GA  102 (189)
T ss_dssp             EEEEEEEESSCHHHHHHHHH--CGGG-GGGTSTTEEEEEEEEECSS-EEEEEEEECCSSSCCCEEEEEEEEEEECTT-SC
T ss_pred             EEEEEEEEECCHHHHHHHHH--hHHH-hhhHHHhcCEEEEEeecCC-ceEEEEEeecCCCcCCcceEEEEEEEECCC-Ce
Confidence            46677889999999999998  8865 8999999999998876422 222233332110 111 1333332223333 24


Q ss_pred             EEEEEEeCCcc---Cc---CceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHHh
Q 031651           82 RVTDVVEGGYL---DV---GFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        82 ~~Y~ileg~~~---~~---~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l~  151 (155)
                      +...+-.....   ..   ....+.+.+.+.| ++++|.+++....++.+..  |.-.   ........+++.|...+.
T Consensus       103 ~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G~i--P~~lvn~~~~~~~~~~l~~L~k~~~  178 (189)
T 3qsz_A          103 ITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGGSI--PSWLANQTVVETPFGTLKALRSHLR  178 (189)
T ss_dssp             EEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCSSS--CHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred             EEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            43333322211   00   1566788899999 8888999999999988653  3211   134455555566555543

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=98.01  E-value=2.9e-05  Score=54.95  Aligned_cols=125  Identities=10%  Similarity=0.041  Sum_probs=73.4

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      .+++.++.|+||+++||+++.  |.. .+++|.+.....+.     .+|..  +.+..| .    +.=++.+++ .++.+
T Consensus        11 ~~i~~~~~i~ap~e~Vw~alt--dp~-~~~~W~~~~~~~d~-----~~Gg~--~~~~~G-~----~~g~v~e~~-p~~~l   74 (145)
T 1x53_A           11 CKITLKETFLTSPEELYRVFT--TQE-LVQAFTHAPATLEA-----DRGGK--FHMVDG-N----VSGEFTDLV-PEKHI   74 (145)
T ss_dssp             EEEEEEEEESSCHHHHHHHTT--CHH-HHHHHSCSCCBCCC-----STTCC--CBBTTT-T----EECCEEEEE-TTTEE
T ss_pred             cEEEEEEEECCCHHHHHHHhC--CHH-HHHHhcCCCceEEC-----CCCCE--EEEECC-e----eEEEEEEEe-CCCEE
Confidence            468888999999999999998  775 47899764322222     22322  333333 1    444667775 45677


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHH-HHHHHHHHHh
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAK-IAEISKNYLL  151 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~-~~k~~e~~l~  151 (155)
                      .|+.-..+.....+  ...++++.+.+ ++|.++.+-...+..+     .....+.... ++..|.+||-
T Consensus        75 ~~~~~~~~~~~~~~--~~v~~~l~~~~-~gT~l~~~~~~~~~~~-----~~~~~~Gw~~~~l~~L~~~le  136 (145)
T 1x53_A           75 VMKWRFKSWPEGHF--ATITLTFIDKN-GETELCMEGRGIPAPE-----EERTRQGWQRYYFEGIKQTFG  136 (145)
T ss_dssp             EEEEEETTSCTTCC--EEEEEECCBCS-SCEEEEEEEEEEEHHH-----HHHHHHTTHHHHHHHHHHHTC
T ss_pred             EEEEecCCCCCCCc--EEEEEEEEECC-CCEEEEEEEECCCHHH-----HHHHHhchhHHHHHHHHHHHh
Confidence            77764433211122  35677787864 5788888844433211     1123344444 5777777763

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=97.89  E-value=6.6e-05  Score=63.71  Aligned_cols=108  Identities=9%  Similarity=0.186  Sum_probs=82.6

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCC--CCceEEEEEecCCCCCcceEEEEE--EEEeCCC
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDG--GVGTILHIKFKPGTPGFAGYKEKF--IEIDNKK   79 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg--~~GsvR~~~~~~g~~~~~~~kErl--~~~D~~~   79 (155)
                      +++.++.|++|++.||+.+.  +..+ +++|+|....++++.+.+  .+|++- +.+..+   . ...-++  ..+ +..
T Consensus         2 ~~~~~~~i~~p~~~v~~~~~--~~~~-~~~~~p~~~~~~~~~~~~~~~~G~~~-~~~~~~---~-~w~~~~~~t~~-~~~   72 (516)
T 3oh8_A            2 SLTTSHFIPFPREMVWDWHT--RKGA-VARLTPPFIPLNPITQAERLADGTTI-FSLPAG---L-KWVARHDLSGF-LNG   72 (516)
T ss_dssp             CEEEEEEESSCHHHHHHHHH--STTH-HHHHSCTTSSCEECSCCSCSSSCEEE-EECSTT---C-EEEEEECGGGC-BTT
T ss_pred             eEEEEEEccCCHHHHHHHhc--Ccch-HHHhCCCCCceEEecCCCCCcCCeEE-EecCCC---c-EEEEEEccccc-cCC
Confidence            47889999999999999998  8766 799999988888775443  578887 776543   2 344455  666 456


Q ss_pred             CeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651           80 RVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL  123 (155)
Q Consensus        80 ~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~  123 (155)
                      +.+......|++.  -|.++.-+..|.+.++ ||.++..++|..
T Consensus        73 ~~F~d~~~~gp~~--~~~~w~h~h~f~~~~~-gt~~~d~~~~~~  113 (516)
T 3oh8_A           73 SRFTDVCLTAPVK--ALANWRHVHNFVDQDG-GTLITDSVSTRL  113 (516)
T ss_dssp             TEEEEECCSCSSG--GGSSCEEEEEEEEETT-EEEEEEEEECSS
T ss_pred             CeEEEEeccCccc--ceeeeEEEEEEEEcCC-CcEEEEEEEeeC
Confidence            6888888877642  2777889999999865 699999999873

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=97.88  E-value=0.00015  Score=54.02  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=67.9

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCC------C-------CcceEE
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGT------P-------GFAGYK   69 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~------~-------~~~~~k   69 (155)
                      .+++.++.|+||+++||+++.  |... +++|.+..      +.+-.+|..-.+.+....      +       ....+.
T Consensus        19 ~~i~~~~~i~Ap~e~Vw~alt--dpe~-~~~W~~~~------~~d~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~   89 (191)
T 2k5g_A           19 QSIRFERLLPGPIERVWAWLA--DADK-RARWLAGG------ELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVAR   89 (191)
T ss_dssp             SSEEEEEEESSSSHHHHHHHH--CHHH-HTTTSCCC------CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEE
T ss_pred             CeEEEEEEeCCCHHHHHHHHc--CHHH-HhhcCCCC------CCCccCCCEEEEEEcCCccccccCcccccccCCCceeE
Confidence            468899999999999999998  8754 78998752      244345666556654210      0       112467


Q ss_pred             EEEEEEeCCCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEE
Q 031651           70 EKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIE  120 (155)
Q Consensus        70 Erl~~~D~~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~  120 (155)
                      -++.++++ .+.+.|+...++..  ..  ...++++++.++ +|.++.+-+
T Consensus        90 g~v~e~~p-p~rl~~~~~~~~~~--~~--~~v~~~l~~~~~-gT~l~~~~~  134 (191)
T 2k5g_A           90 HTLLRCEP-PRVLALTWGGGAGE--AP--SEVLFELSEAGE-QVRLVLTHT  134 (191)
T ss_dssp             EEEEEEET-TTEEEEECCCCSSS--SC--CEEEEEEEECSS-SEEEEEEEE
T ss_pred             EEEEEecC-CCEEEEEeecCCCC--CC--EEEEEEEEEcCC-CEEEEEEEe
Confidence            78888864 56788876543321  12  356888888765 688877755

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=97.82  E-value=0.00017  Score=53.70  Aligned_cols=120  Identities=10%  Similarity=0.079  Sum_probs=74.5

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      ..++.+..|++|+++||+++.  |.. .+++|++..      +++-.+|..-.+.+..        .=++..++ ..+.+
T Consensus        21 ~~i~~~r~i~Appe~Vw~alT--dpe-~l~~W~~p~------~~d~~~Gg~~~~~~~~--------~g~v~e~~-pp~rl   82 (181)
T 4fpw_A           21 RSIIIRQRYDAPVDEVWSACT--DPN-RINRWFIEP------KGDLREGGNFALQGNA--------SGDILRCE-PPRRL   82 (181)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH--CHH-HHHHHSCCE------ESCCSTTCEEEESSSC--------EEECCEEE-TTTEE
T ss_pred             ceEEEEEEECCCHHHHHHHHc--ChH-HHhhccCCC------ccCCCCCCEEEEEecC--------CEEEEEEc-CCcEE
Confidence            367888899999999999998  775 478887532      2443455443333221        23666675 46778


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~  151 (155)
                      .|+...++.   +  ....++.+.+.+ ++|.++++-+..+. +  .  .....+.-..++..|.+||-
T Consensus        83 ~~tw~~~~~---~--~s~vt~~l~~~~-~gT~Ltl~~~~~~~-e--~--~~~~~~GW~~~L~~L~~~L~  140 (181)
T 4fpw_A           83 TISWVYEGK---P--DSEVELRLSEEG-DGTLLELEHATTSE-Q--M--LVEVGVGWEMALDFLGMFIR  140 (181)
T ss_dssp             EEEEBCTTS---C--CEEEEEEEEEET-TEEEEEEEEEESCH-H--H--HHHHHHHHHHHHHHHHHHC-
T ss_pred             EEEEEcCCC---C--cEEEEEEEEECC-CcEEEEEEEEcCCH-H--H--HHHHHHhHHHHHHHHHHHhC
Confidence            888754432   2  235788888865 57888877554321 0  0  01234555667777788774

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=97.72  E-value=0.0033  Score=46.86  Aligned_cols=144  Identities=10%  Similarity=-0.038  Sum_probs=86.3

Q ss_pred             eEEEEEEec-CChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCC-Cc-ceEEEE-EEEEeCCC
Q 031651            4 QLSHELEVN-VPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTP-GF-AGYKEK-FIEIDNKK   79 (155)
Q Consensus         4 ~~~~~i~i~-apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~-~~-~~~kEr-l~~~D~~~   79 (155)
                      .+..+.+|+ +|++++++++.  |.. ..++|.|.+.++++++-+|  ..+-.+.+....+ .. ..+-.+ ...+|+..
T Consensus        53 ~~k~~~~i~~~~~~~v~~~l~--d~~-~r~~Wd~~~~~~~vle~~~--~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g  127 (214)
T 1ln1_A           53 EYKVFGVLEDCSPTLLADIYM--DSD-YRKQWDQYVKELYEQECNG--ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEG  127 (214)
T ss_dssp             EEEEEEEETTSCHHHHHHHHH--CHH-HHHHHCTTEEEEEEEEETT--EEEEEEEECCCTTSCCEEEEEEEEEEEECSTT
T ss_pred             EEEEEEEECCCCHHHHHHHHc--CHH-HHHHHHHHHhhEEEeccCC--CEEEEEEEEcCCCCCCceEEEEEEEEecccCC
Confidence            345677894 99999999998  874 4799999999999887654  4555555542211 11 122222 22344444


Q ss_pred             CeEEEEE---EeCC--ccCcC---ceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHH
Q 031651           80 RVRVTDV---VEGG--YLDVG---FTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKN  148 (155)
Q Consensus        80 ~~~~Y~i---leg~--~~~~~---~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~  148 (155)
                      ..+.+.+   ++-+  +....   ...+.+...+.|.++++|.+++....++.+.  .|.-.   .+......+++.|..
T Consensus       128 ~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~G~--iP~~l~n~~~~~~~~~~l~~l~k  205 (214)
T 1ln1_A          128 RKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ--IPSWLINWAAKNGVPNFLKDMAR  205 (214)
T ss_dssp             CCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC--CCHHHHHHHHHTHHHHHHHHHHH
T ss_pred             CeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCCCc--ccHHHHHHHHHHHhHHHHHHHHH
Confidence            3222221   2211  10001   4557788888998778899999999998854  33221   234555566777777


Q ss_pred             HHhhCC
Q 031651          149 YLLNNR  154 (155)
Q Consensus       149 ~l~~~~  154 (155)
                      ++.+.|
T Consensus       206 ~~~~y~  211 (214)
T 1ln1_A          206 ACQNYL  211 (214)
T ss_dssp             HHHTC-
T ss_pred             HHHhcc
Confidence            766544

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=97.38  E-value=0.0084  Score=43.69  Aligned_cols=104  Identities=14%  Similarity=0.047  Sum_probs=65.1

Q ss_pred             eEEEEEEecCC---------hHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEE
Q 031651            4 QLSHELEVNVP---------AGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIE   74 (155)
Q Consensus         4 ~~~~~i~i~ap---------a~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~   74 (155)
                      ++++.++||-|         .+++|+-+.  -...--....|++.+|++++..+ ..-.|.++|+++     .++|++..
T Consensus         2 ~f~htvpIN~p~~p~~p~LTr~QlW~GL~--~kar~p~~Fvp~i~~c~Vlse~~-~~~~R~l~fg~~-----~i~e~vtl   73 (157)
T 2ffs_A            2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLV--CRAREPQYFVVGLERFEILVDDG-DRLHRRLYLPGL-----VVEDEVVL   73 (157)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHH--HHHHCGGGTCTTCCEEEEEEECS-SEEEEEEEETTE-----EEEEEEEE
T ss_pred             ceeEEEecCCCCCCCCCccCHHHHHHHHH--HHhcChhhcccccCeEEEEecCC-CeEEEEEEECCC-----ccceEEEE
Confidence            36788888876         368998875  22221123467899999997653 367899999765     69999885


Q ss_pred             EeCCCCeEEEEEEeC-CccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031651           75 IDNKKRVRVTDVVEG-GYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR  124 (155)
Q Consensus        75 ~D~~~~~~~Y~ileg-~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~  124 (155)
                        ....++.|.+-.. ...   =+  +.++.++...+|  -.-.++.|+..
T Consensus        74 --~~~~~v~f~~~~t~~~~---gs--~ltn~Iee~~~g--~L~lrF~ye~~  115 (157)
T 2ffs_A           74 --KAPDSAHYSIKPSAEVA---GG--SLDMTIEEPEPG--SLFVRFAYCTR  115 (157)
T ss_dssp             --ETTTEEEEEECCCSSSB---EE--EEEEEEEEEETT--EEEEEEEEEEE
T ss_pred             --cCCcEEEEEcccccCCC---Cc--eEEEEEeeCCCC--cEEEEEEEEcc
Confidence              4556789998662 221   12  334555444333  33445556544

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.32  E-value=0.0039  Score=44.31  Aligned_cols=99  Identities=8%  Similarity=0.079  Sum_probs=64.5

Q ss_pred             CcceEEEEEEecCCh-HhHhchhhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCC
Q 031651            1 MKGQLSHELEVNVPA-GQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNK   78 (155)
Q Consensus         1 m~~~~~~~i~i~apa-~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~   78 (155)
                      |+.++..++.|+||+ ++||++++  +. ..|..|+.. +.    ..|.     .-.+.....    ....-++..+ +.
T Consensus         2 ~k~~i~~e~~i~A~~~~~VW~~IS--tP-egL~~Wfad~v~----~~g~-----~~~F~w~~~----~~~~~~v~~~-~~   64 (136)
T 2lio_A            2 KKEKIHLEYLLNATSKNILWSAIS--TP-TGLEDWFADKVV----SDDK-----TVTFCWGKT----EQRQAGIVAI-RA   64 (136)
T ss_dssp             CCEEEEEEEEECTTSCTHHHHGGG--SH-HHHTTTSSSEEE----EETT-----EEEEESSSS----SEEEEEEEEE-ET
T ss_pred             CCCcEEEEEEecCChHHHHHHHhC--Ch-hhhhcccCCCCc----ccCc-----eEEEEeCCC----CcEeEEEEEE-cC
Confidence            578999999999999 99999998  55 457788865 54    1232     222333331    2567788888 55


Q ss_pred             CCeEEEEEEeCCccCcCceEEEEEEEEEeeCC-CceEEEEEEEEE
Q 031651           79 KRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGS-DSCIIKSTIEYE  122 (155)
Q Consensus        79 ~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~-g~s~v~W~~~y~  122 (155)
                      ++.++|+-...+     ..++..++++...+. +++.++-+ .|-
T Consensus        65 ~~~i~FrW~~~~-----~~~~~~e~~l~~~~~t~~~~L~vt-dFa  103 (136)
T 2lio_A           65 YSFIRFHWLDDE-----NERDYFEIKMSYNELTGDYVLEIT-DFS  103 (136)
T ss_dssp             TTEEEEEESSSS-----SSSCEEEEEEEECTTTSCEEEEEE-EEE
T ss_pred             CCEEEEEccCCC-----CCceEEEEEEEecCCCCcEEEEEe-cCC
Confidence            678888886432     122355777766642 35677666 444

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=97.07  E-value=0.0027  Score=45.46  Aligned_cols=132  Identities=11%  Similarity=0.005  Sum_probs=70.7

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcC-Cc------ceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEe
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYD-TV------EEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEID   76 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P-~v------~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D   76 (155)
                      .+..+.+++||+++||+++-  |  . +.+|++ .+      ..+++ +-.|  |.. .+...+| ..  ...=++.++|
T Consensus         5 ~i~~~r~~~Ap~e~Vw~A~T--d--~-l~~W~~p~~~~~~~~~~~~~-dr~G--G~~-~~~~~~G-~~--~~~g~v~ev~   72 (155)
T 1zxf_A            5 FVRHSVTVKADRKTAFKTFL--E--G-FPEWWPNNFRTTKVGAPLGV-DKKG--GRW-YEIDEQG-EE--HTFGLIRKVD   72 (155)
T ss_dssp             CEEEEEEESSHHHHHHHHHT--T--C-SSSSSSGGGSTTTTCSSCEE-ETTT--TEE-ECCCTTT-SC--CCCEEEEEEE
T ss_pred             eEEEEEEEeCCHHHHHHHHH--h--h-HHhhcCCCccccCCCceEEE-ECCC--CEE-EEECCCC-Ce--EeEEEEEEEC
Confidence            68889999999999999997  6  2 566653 23      24553 2222  343 2333333 11  1123667785


Q ss_pred             CCCCeEEEEEE-eCCc--cCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCccc-CCch---hhHHHHHHHHHHHHHH
Q 031651           77 NKKRVRVTDVV-EGGY--LDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAA-NASF---VSIDTVAKIAEISKNY  149 (155)
Q Consensus        77 ~~~~~~~Y~il-eg~~--~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~-~~~~---~~~~~~~~~~k~~e~~  149 (155)
                       ..+++.|+-- +++.  .....  -..++++++.++|+|.++.+-......+  . .+..   .....-..++..|++|
T Consensus        73 -pp~rl~~tw~~~~~~~~~~~~~--s~vt~~l~~~~~g~T~ltl~~~~~~~~~--~~~~~~~~~~~~~GW~~~l~~L~~~  147 (155)
T 1zxf_A           73 -EPDTLVIGWRLNGFGRIDPDNS--SEFTVTFVADGQKKTRVDVEHTHFDRMG--TKHAKRVRNGMDKGWPTILQSFQDK  147 (155)
T ss_dssp             -TTTEEEEECCCSSSSSCCCSSC--CCEEEEEEEETTTEEEEEEEECSSTTSC--HHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             -CCCEEEEEEecCCCCCCCCCCc--EEEEEEEEECCCCcEEEEEEEecccccc--cchhHHHHHHHHhhHHHHHHHHHHH
Confidence             4556777742 2210  11122  2568889998776688776644321110  0 0000   1112345667777777


Q ss_pred             Hhh
Q 031651          150 LLN  152 (155)
Q Consensus       150 l~~  152 (155)
                      |.+
T Consensus       148 l~~  150 (155)
T 1zxf_A          148 IDE  150 (155)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            643

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=96.94  E-value=0.0064  Score=45.53  Aligned_cols=120  Identities=10%  Similarity=0.071  Sum_probs=71.2

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      +++.+-++++|+++||+++-  |.. .+.+|++.   ++   +|-.+|..  +.+...      ..-++.++++ .+.+.
T Consensus        33 ~l~i~R~f~Ap~e~VW~AlT--dpe-~l~~W~~~---~~---~d~r~GG~--~~~~~~------~~g~v~ev~p-p~rL~   94 (192)
T 2luz_A           33 SIIIRQRYDAPVDEVWSACT--DPN-RINRWFIE---PK---GDLREGGN--FALQGN------ASGDILRCEP-PRRLT   94 (192)
T ss_dssp             EEEEEEEESSCHHHHHHHHH--CHH-HHTTTSCC---EE---ECCSTTSE--EEETTS------EEEEEEEEET-TTEEE
T ss_pred             EEEEEEEeCCCHHHHHHHHc--CHH-HHheeeCC---Cc---ccCccCcE--EEeecc------ccceEEEEec-CeeEE
Confidence            56677779999999999998  764 47888863   22   34334443  233221      2336677865 56777


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhh
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                      |+.-..+.   +.  -..++.+.+.++ ||.++.+=+..+  +   .........=..++..|.+||--
T Consensus        95 ~tw~~~~~---~~--~~vt~~L~~~g~-gT~Ltl~h~~~~--~---~~~~~~~~GW~~~Ld~L~~~L~g  152 (192)
T 2luz_A           95 ISWVYEGK---PD--SEVELRLSEEGD-GTLLELEHATTS--E---QMLVEVGVGWEMALDFLGMFIRG  152 (192)
T ss_dssp             EEEEESSS---CE--EEEEEEEEEETT-EEEEEEEEEESC--H---HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEeecCC---CC--ceEEEEEEEcCC-cEEEEEEEECCC--H---HHHHHHhccHHHHHHHHHHHhCC
Confidence            77644332   22  256888888775 688776543221  1   11111234455677788888753

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=95.19  E-value=0.19  Score=39.20  Aligned_cols=144  Identities=15%  Similarity=0.028  Sum_probs=79.3

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC-CCCceEEEEEecC--CCCCcc-eEEEEEEEE-eCCC
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD-GGVGTILHIKFKP--GTPGFA-GYKEKFIEI-DNKK   79 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd-g~~GsvR~~~~~~--g~~~~~-~~kErl~~~-D~~~   79 (155)
                      +..+.+|++|++.+|+++.  |... .+.|.+.++++++++-- +. =.|-.+....  +.-+.+ .+--|-..- +...
T Consensus        90 ~k~~~~v~~~~~~v~~~L~--D~~~-R~~WD~~~~~~~vle~id~~-~ivY~~~~p~~~~~v~~RDFV~lr~~r~~~~~G  165 (258)
T 3fo5_A           90 FHMEMVVHVDAAQAFLLLS--DLRQ-RPEWDKHYRSVELVQQVDED-DAIYHVTSPALGGHTKPQDFVILASRRKPCDNG  165 (258)
T ss_dssp             EEEEEEESSCHHHHHHHHH--CGGG-GGGTCTTCCEEEEEEEEETT-EEEEEEEECCCTTCSSCEEEEEEEEEECCSSTT
T ss_pred             EEEEEEEeCCHHHHHHHHh--Cchh-HhHhhhhccEEEEEEEcCCC-eEEEEEecCCccCCCCCCEEEEEEEEEeccCCC
Confidence            4566779999999999998  8754 79999999999888542 11 1222333322  101122 233332221 1222


Q ss_pred             --CeEEEEEEeCC--ccCc---CceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch----hhHHHHHHHHHHHHH
Q 031651           80 --RVRVTDVVEGG--YLDV---GFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF----VSIDTVAKIAEISKN  148 (155)
Q Consensus        80 --~~~~Y~ileg~--~~~~---~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~----~~~~~~~~~~k~~e~  148 (155)
                        ..+...=++-+  +...   ....+.+.+-+.|.++++|.+.+...-+|..   .|--.    .+-..+...++.+.+
T Consensus       166 ~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dpG~---lP~~~~n~~g~s~~~~~t~~~~~~  242 (258)
T 3fo5_A          166 DPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATPGV---LNYVTTNVAGLSSEFYTTFKACEQ  242 (258)
T ss_dssp             CCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCGGG---HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             CEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCCCC---CCceEEeccccchHHHHHHHHHHH
Confidence              33333323321  1110   1234567888889888888888765555421   11100    112344566788889


Q ss_pred             HHhhCCC
Q 031651          149 YLLNNRD  155 (155)
Q Consensus       149 ~l~~~~~  155 (155)
                      ||.++.+
T Consensus       243 fl~~~~~  249 (258)
T 3fo5_A          243 FLLDNRN  249 (258)
T ss_dssp             HHHHTC-
T ss_pred             HHHhccc
Confidence            9888743

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=94.42  E-value=1.1  Score=33.38  Aligned_cols=142  Identities=8%  Similarity=-0.132  Sum_probs=74.9

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCC---Cc-ceEEEEEEEEeCCCC
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTP---GF-AGYKEKFIEIDNKKR   80 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~---~~-~~~kErl~~~D~~~~   80 (155)
                      +..+.+|++|++++|+++.  |... -++|-+.+..+++++--+.-=.|-...+....+   .. ..+--|-..-++.+.
T Consensus        69 ~k~~~~v~~~~~~v~~~l~--d~~~-r~~Wd~~~~~~~vle~id~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~  145 (224)
T 1jss_A           69 YKAQGVMDDVVNNVIDHIR--PGPW-RLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGL  145 (224)
T ss_dssp             EEEEEEESSCHHHHHHHHS--SSTT-HHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEE
T ss_pred             EEEEEEEeCCHHHHHHHHh--Cccc-ccccccceeeEEEEEEcCCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeE
Confidence            3567779999999999997  7654 589999999999887532111232222222101   11 122222222223332


Q ss_pred             eEEEEEEeCCccCc---CceEEEEEEEEEeeCCC--ceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHHh
Q 031651           81 VRVTDVVEGGYLDV---GFTLFRVIFEIIEKGSD--SCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        81 ~~~Y~ileg~~~~~---~~~~y~~ti~v~~~~~g--~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l~  151 (155)
                      .+...-++-+....   ....+.+.+.+.|.+++  +|.++|...-++.+..  |...   .+.......++.|..++.
T Consensus       146 vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P~~lvn~~~~~~~~~~~~~Lr~~~~  222 (224)
T 1jss_A          146 LSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMI--PQSAVDTAMASTLANFYSDLRKGLR  222 (224)
T ss_dssp             EEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSCC--CHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCCc--cHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            22111122111010   23344566777886543  6999999999988753  3211   123334455555555543

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=94.30  E-value=1.2  Score=33.12  Aligned_cols=142  Identities=14%  Similarity=0.025  Sum_probs=75.4

Q ss_pred             EEEEEEecCChHhHhchh-hccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCC-CCC--c-ceEEEEEEEEeCCC
Q 031651            5 LSHELEVNVPAGQAWELY-GTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPG-TPG--F-AGYKEKFIEIDNKK   79 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~-~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g-~~~--~-~~~kErl~~~D~~~   79 (155)
                      +..+.++++|++++|+++ .  |... .++|-+.+.++++++--+.--.|-....... .++  . ..+--|....++..
T Consensus        57 ~k~~~~v~~~~~~v~~~l~~--d~~~-r~~Wd~~~~~~~vle~~~~~t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~  133 (221)
T 3p0l_A           57 FRLEVVVDQPMERLYEELVE--RMEA-MGEWNPNVKEIKVLQKIGKDTFITHELAAEAAGNLVGPRDFVSVRCAKRRGST  133 (221)
T ss_dssp             EEEEEEESSCHHHHHHHHTT--TGGG-TTTSCTTCSEEEEEEECSSSEEEEEEEECC---CCSCCEEEEEEEEEEECSSC
T ss_pred             EEEEEEEcCCHHHHHHHHHh--ccch-hhhcCcchheEEEEEecCCCeEEEEEeeccccCCccCCceEEEEEEEEEcCCe
Confidence            455667899999999987 4  6644 7899999999998876422111222211210 011  1 12222222223322


Q ss_pred             CeEEEEEEeCC--ccCcC---ceEEEEEEEEEeeCCC--ceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHH
Q 031651           80 RVRVTDVVEGG--YLDVG---FTLFRVIFEIIEKGSD--SCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNY  149 (155)
Q Consensus        80 ~~~~Y~ileg~--~~~~~---~~~y~~ti~v~~~~~g--~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~  149 (155)
                      ..+...=++-+  +...+   ...+.+.+.+.|.++|  +|.++|....++.+-.  |.-.   .+.......++.|..+
T Consensus       134 ~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P~~lvn~~~~~~~~~~~~~Lr~~  211 (221)
T 3p0l_A          134 CVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWL--PKSIINQVLSQTQVDFANHLRKR  211 (221)
T ss_dssp             EEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSSC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence            22211112211  11111   2344556677887766  7999999999987653  3221   1234444556666666


Q ss_pred             Hh
Q 031651          150 LL  151 (155)
Q Consensus       150 l~  151 (155)
                      +.
T Consensus       212 ~~  213 (221)
T 3p0l_A          212 LE  213 (221)
T ss_dssp             TC
T ss_pred             Hh
Confidence            65

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=91.02  E-value=3.7  Score=30.44  Aligned_cols=142  Identities=8%  Similarity=-0.084  Sum_probs=74.9

Q ss_pred             EEEEEecCChHhHh-chhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecC-CCCC--c-ceEEEEEEEEeCCCC
Q 031651            6 SHELEVNVPAGQAW-ELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKP-GTPG--F-AGYKEKFIEIDNKKR   80 (155)
Q Consensus         6 ~~~i~i~apa~kvW-~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~-g~~~--~-~~~kErl~~~D~~~~   80 (155)
                      ..+..+++|+++++ .++.  |... .++|-+.+.++++++--..--.|-.....+ ....  . ..+--|-...++...
T Consensus        69 k~~~~v~~~~~~v~~~~~~--d~~~-r~~Wd~~~~~~~vle~~~~~t~I~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~  145 (229)
T 1em2_A           69 ILKTFLPCPAELVYQEVIL--QPER-MVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRY  145 (229)
T ss_dssp             EEEEEESSCHHHHHHHTTT--CHHH-HTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSEE
T ss_pred             EEEEEecCCHHHHHHHHHh--Cccc-hhhcccccceEEEEEecCCCeEEEEEEecCcCCCCcCCCeeEEEEEEEEcCCEE
Confidence            34556899999999 7776  7654 789999999988886532111232222222 0011  1 122223222333332


Q ss_pred             eEEEEEEeCCcc--Cc---CceEEEEEEEEEeeC--CCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHH
Q 031651           81 VRVTDVVEGGYL--DV---GFTLFRVIFEIIEKG--SDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYL  150 (155)
Q Consensus        81 ~~~Y~ileg~~~--~~---~~~~y~~ti~v~~~~--~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l  150 (155)
                      .+...=++-+-.  ..   ....+.+.+.+.|.+  .++|.++|....++.+.  .|...   .+.......++.|.+++
T Consensus       146 vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~l~n~~~~~~~~~~~~~Lr~~~  223 (229)
T 1em2_A          146 LSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR--LPRYLIHQSLAATMFEFAFHLRQRI  223 (229)
T ss_dssp             EEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS--SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222211  00   133344566777743  45799999999998775  33321   13344455666666666


Q ss_pred             hh
Q 031651          151 LN  152 (155)
Q Consensus       151 ~~  152 (155)
                      .+
T Consensus       224 ~~  225 (229)
T 1em2_A          224 SE  225 (229)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=86.97  E-value=7.6  Score=28.68  Aligned_cols=143  Identities=7%  Similarity=-0.141  Sum_probs=73.5

Q ss_pred             EEEEEEecCChHhHhchh--hccccccchhhhcCCcceEEEEcCCCCCceEEE-EEecCCCCC--c-ceEEEEEEEEeCC
Q 031651            5 LSHELEVNVPAGQAWELY--GTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILH-IKFKPGTPG--F-AGYKEKFIEIDNK   78 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~--~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~-~~~~~g~~~--~-~~~kErl~~~D~~   78 (155)
                      +..+.+|++|++++++++  .  |... .++|-+.+..+++++--.+...|-. ++.....+.  . ..+--|-...++.
T Consensus        69 ~k~~~~v~~~~~~v~~~l~~~--d~~~-r~~Wd~~~~~~~vle~i~~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~  145 (231)
T 2r55_A           69 YRGEGIVYGTLEEVWDCVKPA--VGGL-RVKWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYED  145 (231)
T ss_dssp             EEEEEEESSCHHHHHHHHCC----CCS-HHHHCTTCSEEEEEEECSSSEEEEEEECCCBTTTTBCCEEEEEEEEEEECTT
T ss_pred             EEEEEEECCCHHHHHHHHHhh--Ccch-hhhhccccceeEEEEEcCCCEEEEEEEeccccCCccCCCeEEEEEEEEEcCC
Confidence            445667899999999999  5  6654 7899998888888866432223321 111111011  1 1232232333333


Q ss_pred             C-CeEEEEEEeCC--ccCcC---ceEEEEEEEEEeeC--CCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHH
Q 031651           79 K-RVRVTDVVEGG--YLDVG---FTLFRVIFEIIEKG--SDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISK  147 (155)
Q Consensus        79 ~-~~~~Y~ileg~--~~~~~---~~~y~~ti~v~~~~--~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e  147 (155)
                      + ..+...=++-+  +....   ...+.+.+-+.|.+  +++|.++|....++.+..  |...   .+...+...++.|.
T Consensus       146 g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P~~lvn~~~~~~~~~~~~~Lr  223 (231)
T 2r55_A          146 GTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGYL--PQNVVDSFFPRSMTRFYANLQ  223 (231)
T ss_dssp             SCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSSC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCCc--cHHHHHHHHhHhHHHHHHHHH
Confidence            2 22222222221  11111   22233445566743  457999999999987653  3211   12334445666666


Q ss_pred             HHHhh
Q 031651          148 NYLLN  152 (155)
Q Consensus       148 ~~l~~  152 (155)
                      .++.+
T Consensus       224 ~~~~~  228 (231)
T 2r55_A          224 KAVKQ  228 (231)
T ss_dssp             HHHHG
T ss_pred             HHHHH
Confidence            66654

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=86.83  E-value=8.3  Score=29.01  Aligned_cols=142  Identities=14%  Similarity=0.011  Sum_probs=78.1

Q ss_pred             EEEEEEecCChHhHhc-hhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCC-Ccc-eEEEEEEE--EeCCC
Q 031651            5 LSHELEVNVPAGQAWE-LYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTP-GFA-GYKEKFIE--IDNKK   79 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~-~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~-~~~-~~kErl~~--~D~~~   79 (155)
                      +..+.+|++++++++. ++.  |    .++|-+.+.++++++--+.--.|-...+....+ ..+ .+--|--.  +++..
T Consensus        77 ~K~~~~v~~~~~~v~~~ll~--d----r~~Wd~~~~~~~vle~id~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~  150 (237)
T 2pso_A           77 WKASVEVEAPPSVVLNRVLR--E----RHLWDEDFVQWKVVETLDRQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGM  150 (237)
T ss_dssp             EEEEEEESSCHHHHHHHHHH--C----GGGTCTTBCCCEEEEEEETTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGC
T ss_pred             EEEEEEEcCChHHHHHHHHh--h----hhhHHhhhceEEEEEEcCCCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCE
Confidence            5677889999999875 555  5    578999888888776521111233333332101 111 22223222  23444


Q ss_pred             CeEEEEEEeCC--ccC--cCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhh
Q 031651           80 RVRVTDVVEGG--YLD--VGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        80 ~~~~Y~ileg~--~~~--~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                      ..+..+-++-+  +..  -....+.+.+-+.|.++++|.++|....++.+..+.--...+.......++.|.+++.+
T Consensus       151 ~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~G~iP~~ln~~~~~~~~~~l~~LR~~~~~  227 (237)
T 2pso_A          151 CTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKGHSPEWYSKGFGHLCAAEVARIRNSFQP  227 (237)
T ss_dssp             EEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCSSSCTTTTTTHHHHHHHHHHHHHHHTTSC
T ss_pred             EEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444444432  111  02345667778889877889999999999986532211112334444555555555543

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=85.09  E-value=10  Score=28.47  Aligned_cols=48  Identities=19%  Similarity=0.153  Sum_probs=35.3

Q ss_pred             EEEe-cCChHhHhchhhccccccchhhhcCCcceEEEEcC-CCCCceEEEEEec
Q 031651            8 ELEV-NVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEG-DGGVGTILHIKFK   59 (155)
Q Consensus         8 ~i~i-~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eG-dg~~GsvR~~~~~   59 (155)
                      ..++ +++++.+++++.  |... .++|-|.+.++++++- ++ -+.|-.+.+.
T Consensus        78 ~~~~~~~~~~~v~~~l~--d~~~-r~~Wd~~~~~~~vle~i~~-~~~i~y~~~~  127 (255)
T 2e3n_A           78 THAVKGVTGHEVCNYFW--NVDV-RNDWETTIENFHVVETLAD-NAIIIYQTHK  127 (255)
T ss_dssp             EEEEETCCHHHHHHHHH--CGGG-HHHHCCSEEEEEEEEEEET-TEEEEEEEEC
T ss_pred             EEEEcCCCHHHHHHHHh--Ccch-HhhhhhhcceeEEEEEcCC-CCEEEEEEee
Confidence            4445 499999999998  8754 7999999999998876 32 2345555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	7e-20
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	1e-19
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	2e-18
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	6e-18
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	1e-16
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	2e-13
d1vjha_	120	d.129.3.1 (A:) Hypothetical protein At1G24000 {Tha	0.001

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score = 78.4 bits (193), Expect = 7e-20
 Identities = 25/150 (16%), Positives = 56/150 (37%), Gaps = 4/150 (2%)

Query: 6   SHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGF 65
             EL  +V A + ++ +  I +  ++ K      +   ++GDGG GT+  I    G P  
Sbjct: 6   VLELTSSVSAEKIFQGF-VIDVDTVLPKAAPGAYKSVEIKGDGGPGTLKIITLPDGGP-I 63

Query: 66  AGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE 125
                +   ++ +       V++G  L            ++       I K+T  +  + 
Sbjct: 64  TTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKG 123

Query: 126 EAAANASFV--SIDTVAKIAEISKNYLLNN 153
           +A      +  + +    + +  + YL+ N
Sbjct: 124 DAVVPEENIKYANEQNTALFKALEAYLIAN 153

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score = 77.6 bits (191), Expect = 1e-19
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 7/158 (4%)

Query: 3   GQLSHELEV--NVPAGQAWELYGTIKLVKLVEKEY-DTVEEIEVVEGDGGVGTILHIKFK 59
           G  ++E E    +PA + ++ +  +   KLV K     +  +E +EG+GG GTI  I F 
Sbjct: 1   GVFNYETEATSVIPAARMFKAF-ILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFP 59

Query: 60  PGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI 119
            G P F   K++  E+D+        V+EGG +           +I+      C++K + 
Sbjct: 60  EGFP-FKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISN 118

Query: 120 EYELREEAAANASFVSI--DTVAKIAEISKNYLLNNRD 155
           +Y  +      A  V    +    +    ++YLL + D
Sbjct: 119 KYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSD 156

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 74.5 bits (183), Expect = 2e-18
 Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 6/154 (3%)

Query: 5   LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPG 64
              E    +   + ++         ++ K  + ++ IE VEG+GG GTI  +    G   
Sbjct: 5   FEDESTSTIAPARLYKAL-VKDADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLIEGGE- 62

Query: 65  FAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR 124
                 K   +D         +V G  L           +++E  +   I K TI+ E +
Sbjct: 63  TKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETK 122

Query: 125 EEAAANASFVSIDTVAKIAEISK---NYLLNNRD 155
            +A  N         A+     K   NYL  + +
Sbjct: 123 GDAQPNEEEGK-AAKARGDAFFKAIENYLSAHPE 155

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score = 73.4 bits (180), Expect = 6e-18
 Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 7/158 (4%)

Query: 3   GQLSHELEV--NVPAGQAWELYGTIKLVKLVEKEY-DTVEEIEVVEGDGGVGTILHIKFK 59
           G  ++E E    +P  + ++ +  +    LV K     ++  E++EGDGG GTI  I F 
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAF-VLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFG 59

Query: 60  PGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI 119
            G+  +   K K   ID +       ++EG  L           +++   S   IIKST 
Sbjct: 60  EGSQ-YGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTS 118

Query: 120 EYELREEAAANAS--FVSIDTVAKIAEISKNYLLNNRD 155
            Y  +              +  + + ++ + YL  + D
Sbjct: 119 HYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPD 156

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 70.3 bits (172), Expect = 1e-16
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 3/152 (1%)

Query: 5   LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPG 64
             +E    V   + ++   T    ++V K  + ++ +E+VEG+GG GTI  I        
Sbjct: 5   FENEQSSTVAPAKLYKAL-TKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGH- 62

Query: 65  FAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR 124
            +    K   ID         ++ G  LD          +I+       I K  +++  +
Sbjct: 63  TSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTK 122

Query: 125 EEAAANASFVSI-DTVAKIAEISKNYLLNNRD 155
            +  +             + +  + Y+L + D
Sbjct: 123 GDVLSETVRDQAKFKGLGLFKAIEGYVLAHPD 154

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score = 61.1 bits (148), Expect = 2e-13
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 6   SHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGF 65
             E   +V   + ++   T     + +K    ++ IE+VEG+GGVGTI  I    G    
Sbjct: 6   RDETSSSVAPAKLYKAL-TKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDK-T 63

Query: 66  AGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE 125
           +   +K   ID         +V G  L           +++       I K T+++  + 
Sbjct: 64  SFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKG 123

Query: 126 EA 127
           +A
Sbjct: 124 DA 125

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 36/123 (29%)

Query: 1   MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKP 60
           +KG LS + +V  PA + +  +                  +E                K 
Sbjct: 3   LKGALSVKFDVKCPADKFFSAF------------------VEDTNRPFE---------KN 35

Query: 61  GTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKG-SDSCIIKSTI 119
           G       K +   +D  K+     +         F   +    +   G  D   +  T 
Sbjct: 36  G-------KTEIEAVDLVKKTMTIQMSGSEIQKY-FKTLKGSIAVTPIGVGDGSHVVWTF 87

Query: 120 EYE 122
            +E
Sbjct: 88  HFE 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1fm4a_	159	Major tree pollen allergen {European white birch (	100.0
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	100.0
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	100.0
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	100.0
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.96
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.95
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.61
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.58
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.58
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.44
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	99.15
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	99.06
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	99.03
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	98.79
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	98.7
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.47
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.37
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	98.11
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	97.99
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	97.92
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	97.76
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	97.46
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	97.41
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	97.15
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	97.08
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	96.69
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	94.44
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	90.62

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=100.00  E-value=4.2e-44  Score=264.61  Aligned_cols=150  Identities=24%  Similarity=0.375  Sum_probs=136.3

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      +++.++++++||+|+|+++ ..|+++++|+|+|+ +++|+++||||++||||.|+|..+ ++.+.+||||+.+|+++|++
T Consensus         4 ~~e~E~~~~v~a~k~~k~~-~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~-~~~~~~Kerve~iD~~~~~~   81 (159)
T d1fm4a_           4 NYETEATSVIPAARMFKAF-ILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEG-FPFKYVKDRVDEVDHTNFKY   81 (159)
T ss_dssp             EEEEEEEESSCHHHHHHHH-TTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTT-SSSSEEEEEEEEEETTTTEE
T ss_pred             EEEEEeeccCCHHHHHHHH-HhCcccccccccCcceEEEEEECCCCCCCCEEEEEecCC-CCceEEEEEEEEEcccccEE
Confidence            4566666899999999986 45898999999999 999999999999999999999988 77889999999999999999


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch--hhHHHHHHHHHHHHHHHhhCCC
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF--VSIDTVAKIAEISKNYLLNNRD  155 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~--~~~~~~~~~~k~~e~~l~~~~~  155 (155)
                      +|++|||+.+..+|++|+++++|.|.++|+|+++|+++|+++++.+++++.  .+++.+.+|+|++|+||++||+
T Consensus        82 ~y~viEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt~eYe~~~~~~~~~e~~k~~ke~~~~~~K~iE~YLlanp~  156 (159)
T d1fm4a_          82 NYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSD  156 (159)
T ss_dssp             EEEEEEBTTBTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCTTTTHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEEEEeccccccceEEEEEEEEEecCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhChh
Confidence            999999998766899999999999999999999999999999987655543  3678999999999999999997

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=100.00  E-value=9.3e-44  Score=262.71  Aligned_cols=150  Identities=23%  Similarity=0.368  Sum_probs=136.9

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      +.+.|+++++||+|+|+++ ..|+++++|+++|+ ++++++++|||++||||.|+|..+ ++.+++||||+.+|+++|++
T Consensus         4 ~~~~E~~~~vpa~k~~k~~-~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~-~~~~~~KErie~iD~~~~~~   81 (159)
T d1e09a_           4 TYESEFTSEIPPPRLFKAF-VLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEG-SQYGYVKHKIDSIDKENYSY   81 (159)
T ss_dssp             EEEEEEEESSCHHHHHHHH-TTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCS-SSCEEEEEEEEEEETTTTEE
T ss_pred             EEEEEEeecCCHHHHHHHH-hcChhhcCcccCCcceeEEEEEcCCCCcCcEEEEEEcCC-CCcEEEEEEEEEEcccccEE
Confidence            5667777899999999986 34898999999999 999999999999999999999998 77899999999999999999


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch--hhHHHHHHHHHHHHHHHhhCCC
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF--VSIDTVAKIAEISKNYLLNNRD  155 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~--~~~~~~~~~~k~~e~~l~~~~~  155 (155)
                      +|++|||+++...|++|+.++++.+.+++||+++|+++|+++++..++++.  .+++.+..|+|+||+||++||+
T Consensus        82 ~y~viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt~eYe~~~~~~~~~e~~~~~~e~~~~~~K~iEayLlanp~  156 (159)
T d1e09a_          82 SYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPD  156 (159)
T ss_dssp             EEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEEEEecccccccEEEEEEEEEEccCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhChh
Confidence            999999998866899999999999999889999999999999988665544  3578999999999999999997

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=2e-43  Score=259.71  Aligned_cols=149  Identities=18%  Similarity=0.222  Sum_probs=136.7

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      +++.|+++++||+|+|+++ ..|+++++|+++|+|++++++||||++||||.|+|..+ ++.+.+|||++++|++||+++
T Consensus         4 t~~~E~~~~v~a~klfka~-~~d~~~l~pk~~~~i~s~e~~eGdGg~GsIk~~~~~~~-~~~~~~Kerie~iD~en~~~~   81 (155)
T d1icxa_           4 AFENEQSSTVAPAKLYKAL-TKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHD-GHTSFVLHKLDAIDEANLTYN   81 (155)
T ss_dssp             EEEEEEEESSCHHHHHHHH-TTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEESS-SSEEEEEEEEEEEEGGGTEEE
T ss_pred             EEEEeEEecCCHHHHhhhh-eeccchhchhhhhheeeeeEecCCCccceEEEEEeccC-CceEEEEEEEEEEcccccEEE
Confidence            5667777999999999997 56999999999999999999999999999999999998 778999999999999999999


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch--hhHHHHHHHHHHHHHHHhhCCC
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF--VSIDTVAKIAEISKNYLLNNRD  155 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~--~~~~~~~~~~k~~e~~l~~~~~  155 (155)
                      |+++||+++...|++|+.++++.|.++|||+++|+++|++.++. .+++.  .+++.+.+|||++|+||++|||
T Consensus        82 y~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t~eYe~~g~~-~~e~~~~~~ke~~~~~fK~iE~YLlanPd  154 (155)
T d1icxa_          82 YSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDV-LSETVRDQAKFKGLGLFKAIEGYVLAHPD  154 (155)
T ss_dssp             EEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSS-CCHHHHTTHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCC-CChhhHHHHHHHHHHHHHHHHHHHhhCcC
Confidence            99999998876899999999999999989999999999999875 44443  4789999999999999999997

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=1.2e-43  Score=261.34  Aligned_cols=151  Identities=19%  Similarity=0.221  Sum_probs=136.0

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR   82 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~   82 (155)
                      .+++.|+++++||+|+|+++ ..|+++++|++.|.|++|+++||||++||||.|+|..| ++.+++|||++.+|++++++
T Consensus         3 ~t~~~E~~~~v~a~k~fka~-~~d~~~l~pk~p~~i~s~e~~eGdG~~GsIr~~~~~~g-~~~~~~Kerie~vD~e~~~~   80 (157)
T d1xdfa1           3 FTFEDESTSTIAPARLYKAL-VKDADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLIEG-GETKYVLHKIEAVDEANLRY   80 (157)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-HHSHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEET-TEEEEEEEEEEEEEGGGTEE
T ss_pred             eEEEEEEeccCCHHHHHHHH-hhchhhccccchhheecceeecCCCCCCcEEEEEEcCC-CccEEEEEEEEEEechhcEE
Confidence            35677888999999999987 35898888997444999999999999999999999998 77889999999999999999


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch--hhHHHHHHHHHHHHHHHhhCCC
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF--VSIDTVAKIAEISKNYLLNNRD  155 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~--~~~~~~~~~~k~~e~~l~~~~~  155 (155)
                      +|+++||+++...|++|+.++++.|.++|||+++|+++|+++++..++++.  .+++.+.+|+|++|+||++|||
T Consensus        81 ~y~viEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t~eYe~~~~~~~~~e~ik~~~e~~~~~~K~iEaYLlanpd  155 (157)
T d1xdfa1          81 NYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE  155 (157)
T ss_dssp             EEEEESSTTSCTTEEEEEEEEEEEECTTSSEEEEEEEEEEESSSSCCCHHHHHHHHHHHHTTTHHHHHHHHTSGG
T ss_pred             EEEEEecccccccEEEEEEEEEEEcCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            999999998866899999999999999999999999999999987666543  3678899999999999999997

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=100.00  E-value=1.4e-42  Score=254.88  Aligned_cols=148  Identities=17%  Similarity=0.229  Sum_probs=133.8

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      .+.+.|+++++||+|+|++| ..|+++++|+++|+ |++|+ ++|||++||||.|+|..+ ++.+.+|||++++|+++|+
T Consensus         3 ~t~e~E~~~~v~a~k~~ka~-~~d~~~l~Pk~~P~~i~sve-veGdG~~GsIr~~~~~~~-~~~~~~Kerve~iD~~~~~   79 (153)
T d2bk0a1           3 QTHVLELTSSVSAEKIFQGF-VIDVDTVLPKAAPGAYKSVE-IKGDGGPGTLKIITLPDG-GPITTMTLRIDGVNKEALT   79 (153)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-TTSHHHHHHHHCGGGCSEEE-EESSSSTTCEEEEECCTT-SSCCEEEEEEEEEETTTTE
T ss_pred             eEEEEEEeccCCHHHHHHHH-hhcccccccccccceeeEEE-EECCCCCCeEEEEEEecC-ccceeeEEEEEEEecCccE
Confidence            46677888999999999988 45888889999999 99999 599999999999999988 7789999999999999999


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch--hhHHHHHHHHHHHHHHHhhC
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF--VSIDTVAKIAEISKNYLLNN  153 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~--~~~~~~~~~~k~~e~~l~~~  153 (155)
                      ++|+++||+.+...|++|+.++++.|.++|||+++|+++|+++++..++++.  .+++.+.+|+|++|+||++|
T Consensus        80 ~~y~viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t~eYe~~~~~~~~~e~~k~~~e~~~~~~K~iE~YLlan  153 (153)
T d2bk0a1          80 FDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN  153 (153)
T ss_dssp             EEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999998766899999999999999999999999999999987554433  35788999999999999998

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=100.00  E-value=1e-38  Score=232.83  Aligned_cols=142  Identities=20%  Similarity=0.238  Sum_probs=126.3

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      .+++.|+++++||+|+|+++ ..|+++ +|+|+|+ |+++++++|||++||||.|+|..+ ++.+++||||+.+|+++|+
T Consensus         3 ~~~~~E~~~~v~a~k~~ka~-~~d~~~-l~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g-~~~~~~kErl~~iD~~~~~   79 (147)
T d1txca1           3 FVFRDETSSSVAPAKLYKAL-TKDSDT-IAQKIDGPIQSIELVEGNGGVGTIKKITANEG-DKTSFVLQKVDAIDEANLG   79 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-HTTHHH-HHHHTTSSEEEEEEEESSSSTTCEEEEEEEET-TEEEEEEEEEEEEEGGGTE
T ss_pred             eEEEEEEeccCCHHHHHHhh-hccccc-CccccccccccceeecCCCCcceEEEEEEcCC-CcceEEEEEEEEEccCCcE
Confidence            35677888999999999866 458876 6778899 999999999999999999999988 6678999999999999999


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch--hhHHHHHHHHHHHH
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF--VSIDTVAKIAEISK  147 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~--~~~~~~~~~~k~~e  147 (155)
                      ++|+++||+++..+|++|++++++.|.++|||+++|+++|+++++.+++++.  .+++.+.+|||++|
T Consensus        80 ~~y~iiEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~~~y~~~~~~~~~ee~~k~~k~~~~~~~KavE  147 (147)
T d1txca1          80 YDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIE  147 (147)
T ss_dssp             EEEEEEESTTSCTTEEEEEEEEEEEECSTTCEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEccCccccceEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHhhhheecC
Confidence            9999999998767899999999999999999999999999999887655544  26788999999986

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=5.8e-29  Score=174.83  Aligned_cols=116  Identities=16%  Similarity=0.172  Sum_probs=101.9

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKR   80 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~   80 (155)
                      |+|+++.+++|++||+++|++|.  +..                +|+-                .+..|||++++|++|+
T Consensus         3 l~gkl~~eveik~~a~kf~~~~~--~~~----------------~~~~----------------~~~~KerVe~vD~en~   48 (120)
T d1vjha_           3 LKGALSVKFDVKCPADKFFSAFV--EDT----------------NRPF----------------EKNGKTEIEAVDLVKK   48 (120)
T ss_dssp             SEEEEEEEEEESSCHHHHHHHHH--HHT----------------TSCS----------------STTCEEEEEEEETTTT
T ss_pred             cceEEEEEEEecCCHHHHHHHhh--hcc----------------CCCC----------------CcccEEEEEEEcCCCC
Confidence            68999999999999999999997  431                2320                1246999999999999


Q ss_pred             eEEEEEEeCCccCcCceEEEEEEEEEeeCCC-ceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhh
Q 031651           81 VRVTDVVEGGYLDVGFTLFRVIFEIIEKGSD-SCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        81 ~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g-~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                      +++|+++||+++. .|++|+++++|+|.++| ||+++|+++|++.++. .++|+.+++++.+++|+||+||++
T Consensus        49 sity~vieGdvl~-~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~~~-~p~p~~~~e~~~~~~K~id~yLL~  119 (120)
T d1vjha_          49 TMTIQMSGSEIQK-YFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKD-IDDPHSIIDESVKYFKKLDEAILN  119 (120)
T ss_dssp             EEEEEEECTTGGG-TEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTT-SCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeecccc-ceeEEEEEEEEEecCCCCceEEEEEEEEEeCCCC-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999875 79999999999999886 8999999999999886 566667899999999999999997

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.95  E-value=1.9e-26  Score=164.38  Aligned_cols=109  Identities=15%  Similarity=0.269  Sum_probs=98.2

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      .++.+++|+|||++||++++  ||.+ +|+|+|.+.+|+..++    |++|.+++.+| +   .+.|||+.+|+.+|+++
T Consensus         3 ~~~~si~I~A~pe~VW~~v~--df~~-~~~W~p~v~~~~~~~~----G~~R~~~~~~g-~---~~~E~l~~~d~~~~~~~   71 (138)
T d3cnwa1           3 HTTTSMEIFGSPEQVWQLIG--GFNS-LPDWLPYIPSSKLTEG----GRVRHLANPDG-D---TIIERLEVFNDKERYYT   71 (138)
T ss_dssp             EEEEEEEESSCHHHHHHHHC--CTTC-GGGTCTTCSEEEEEGG----GTEEEEECTTC-C---EEEEEEEEEETTTTEEE
T ss_pred             cEEEEEEEeCCHHHHHHHHh--Cccc-hHHHhcccceeEeecC----ceeEEEEecCC-c---eeEEEEEEEeCCCcEEE
Confidence            58999999999999999999  9987 7999999999996432    89999999877 4   79999999999999999


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCC-ceEEEEEEEEEEcCC
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSD-SCIIKSTIEYELREE  126 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g-~s~v~W~~~y~~~~~  126 (155)
                      |++++|++   |+++|.++++|.|.++| +|.++|+++|+|.+.
T Consensus        72 y~~~~~~~---p~~~~~~~~~l~p~~~g~~t~v~w~~~f~p~~~  112 (138)
T d3cnwa1          72 YSIMNAPF---PVTNYLSTIQVKEGTESNTSLVEWSGTFTPVEV  112 (138)
T ss_dssp             EEEEECSS---SEEEEEEEEEEEECSSTTCEEEEEEEEEEESSS
T ss_pred             EEEecCCC---cceeeEEEEEEEECCCCCeEEEEEEEEEecCCC
Confidence            99999987   89999999999998765 699999999998643

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.61  E-value=1.2e-13  Score=97.35  Aligned_cols=118  Identities=18%  Similarity=0.271  Sum_probs=88.4

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKR   80 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~   80 (155)
                      |.++++.+++|+||+++||+++.  |+.+ +|.|+|.+.++++++.++ .|....+.+..+.+......+.....++..+
T Consensus         1 m~~~~e~si~I~Ap~~~Vw~~l~--D~~~-~~~w~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (155)
T d2rera1           1 MAARTDNSIVVNAPFELVWDVTN--DIEA-WPELFSEYAEAEILRQDG-DGFDFRLKTRPDANGRVWEWVSHRVPDKGSR   76 (155)
T ss_dssp             CCEEEEEEEEESSCHHHHHHHHT--CGGG-HHHHCSSEEEEEEEECCS-SCEEEEEEECCCTTSCCCEEEEEEEEEGGGT
T ss_pred             CCCEEEEEEEECCCHHHHHHHHH--Chhh-HhhhhhhceEEEEeecCC-CceEEEEEEEEeeeeeeEEEEEEEEEcCCcc
Confidence            88999999999999999999999  9987 799999999999876652 2333334332221222234444455778888


Q ss_pred             eEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031651           81 VRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA  127 (155)
Q Consensus        81 ~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~  127 (155)
                      .+.|....++    +...+..++++.|.++ ||.++|+.+|+..+..
T Consensus        77 ~~~~~~~~~~----~~~~~~~~w~~~~~~~-gT~v~~~~~~~~~~~~  118 (155)
T d2rera1          77 TVRAHRVETG----PFAYMNLHWTYRAVAG-GTEMRWVQEFDMKPGA  118 (155)
T ss_dssp             EEEEEESSCT----TEEEEEEEEEEEEETT-EEEEEEEEEEEECTTC
T ss_pred             EEEEEeecCc----cceeeEEEEEEeecCC-ccEEEEEEEEEECCCc
Confidence            8888885444    4677899999999875 7999999999977654

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=1.4e-13  Score=96.34  Aligned_cols=137  Identities=17%  Similarity=0.165  Sum_probs=96.1

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      .++.++.|+||+++||+++.  |+.+ +|+|+|.+++++++++++. +....+.+... +.......++. .++.++.+.
T Consensus         2 ~v~~~~~I~ap~~~V~~~l~--D~~~-~~~w~p~~~~~~il~~~~~-~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~i~   75 (146)
T d2d4ra1           2 EVRAERYIPAPPERVYRLAK--DLEG-LKPYLKEVESLEVVAREGA-RTRSRWVAVAM-GKKVRWLEEEE-WDDENLRNR   75 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHH--CHHH-HGGGCTTEEEEEEEEEETT-EEEEEEEEEET-TEEEEEEEEEE-EETTTTEEE
T ss_pred             EEEEEEEECCCHHHHHHHHH--Chhh-HHhhccccEEEEEEEecCC-cceEEEEEEee-eeeEEEEEEEE-EcCCCCEEE
Confidence            47899999999999999999  9976 7999999999998866532 33334444333 22234455544 678999999


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCccc--CCch---hhHHHHHHHHHHHHHHHhh
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAA--NASF---VSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~--~~~~---~~~~~~~~~~k~~e~~l~~  152 (155)
                      |++..|+     +..+.+++++.|.++ ||.+.|+++|+.......  ..+.   .+.+.+..+.+.+.+.+.+
T Consensus        76 ~~~~~g~-----~~~~~g~w~l~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  143 (146)
T d2d4ra1          76 FFSPEGD-----FDRYEGTWVFLPEGE-GTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLA  143 (146)
T ss_dssp             EEEEEES-----CSEEEEEEEEEECSS-SEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEccCC-----cceEEEEEEEEecCC-ceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999875     345789999999876 699999999996533211  1111   1334455566666655544

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.58  E-value=8.6e-14  Score=96.50  Aligned_cols=105  Identities=19%  Similarity=0.257  Sum_probs=85.6

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      +++.++.|+||+++||+++.  |+.+ +|.|+|.+.+++. +|+.++|+...+++..+ +   .+..++..+++ ++.++
T Consensus         2 ~~s~si~I~Ap~e~Vw~~~~--d~~~-~~~W~~~~~~~~~-~~~~~~G~~~~~~~~~~-~---~~~~~v~~~~p-~~~~~   72 (137)
T d2b79a1           2 KFSFELAVNTKKEDAWTYYS--QVNQ-WFVWEGDLEQISL-EGEFTTGQKGKMKMEDM-P---ELAFTLVEVRE-NQCFS   72 (137)
T ss_dssp             EEEEEEEESSCHHHHHHHHH--CGGG-GGGTSTTEEEEEE-SSSSSTTCEEEEEETTS-C---CEEEEECCCBT-TTEEE
T ss_pred             ceEEEEEEcCCHHHHHHHHh--hhhh-CccccCcccceee-cccccceEEEEEEEcCC-c---ceeeeeecccC-CcEEE
Confidence            47899999999999999999  9976 8999999999995 56667899999998765 4   57788888854 56788


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL  123 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~  123 (155)
                      |....      +...+.....+.+.++|+|.++|+.+|..
T Consensus        73 ~~~~~------~~~~~~~~~~~~~~~~g~t~vt~~~~~~g  106 (137)
T d2b79a1          73 DLTAT------PFGNVLFEHEILENPDGTISLRHSVSLTD  106 (137)
T ss_dssp             EEEEE------TTEEEEEEEEEEECTTSCEEEEEEEEECS
T ss_pred             EEecc------cceeeeeEEEEccCCCCcEEEEEEEeccc
Confidence            87632      23445777888898888899999999974

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.44  E-value=5.3e-12  Score=86.95  Aligned_cols=115  Identities=15%  Similarity=0.232  Sum_probs=76.1

Q ss_pred             CcceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCC
Q 031651            1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKR   80 (155)
Q Consensus         1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~   80 (155)
                      |+=+++++|+|++||++||+++.  |+.+ +|.|+|+++++++..+  ..+.......... .............++...
T Consensus         1 ~~~k~e~si~I~ap~e~Vw~~l~--D~~~-~~~w~p~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   74 (147)
T d2ns9a1           1 LKVRYEGSFEVSKTPEEVFEFLT--DPKR-FSRAFPGFKSVEVEDG--SFTIELRLSLGPL-RGDARVRASFEDLEKPSK   74 (147)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHHT--CHHH-HGGGSTTEEEEEEETT--EEEEEEEEESSSS-EEEEEEEEEEEEEETTTE
T ss_pred             CcEEEEEEEEEcCCHHHHHHHHh--CHhh-hhhcccchhheeeccc--ccceeEEEEEEEE-eeEeeeeeeeeeecCCcc
Confidence            56689999999999999999999  9987 8999999999885333  2222323332221 111233344444444443


Q ss_pred             eEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651           81 VRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE  125 (155)
Q Consensus        81 ~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~  125 (155)
                       ..+........  ....+..++.+.+.++ ||.++|+.+++..+
T Consensus        75 -~~~~~~~~~~~--~~~~~~~~~~l~~~~~-gt~v~~~~~~~~~g  115 (147)
T d2ns9a1          75 -ATVKGSGRGAG--STLDFTLRFAVEPSGG-GSRVSWVFEGNVGG  115 (147)
T ss_dssp             -EEEEEEEECSS--EEEEEEEEEEEEEETT-EEEEEEEEEEEEEE
T ss_pred             -eeEEEeeeccc--cceeeEEEEEEEecCC-CcEEEEEEEEEeCc
Confidence             44333333322  4666888999999765 69999999998764

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=99.15  E-value=1.5e-09  Score=75.10  Aligned_cols=113  Identities=12%  Similarity=0.069  Sum_probs=74.2

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT   84 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   84 (155)
                      .+.+++|++|+++||+++.  |..+ +|+++|++++++.++.+...+.++ +.+..- ...-..+.++...+...+. ..
T Consensus         3 ~s~~~~i~~~~e~v~~~l~--D~~~-~~~~~Pg~~~~~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~-~~   76 (147)
T d2pcsa1           3 GNGSIELKGTVEEVWSKLM--DPSI-LSKCIMGCKSLELIGEDKYKADLQ-IGIAAV-KGKYDAIIEVTDIKPPYHY-KL   76 (147)
T ss_dssp             EEEEEEEESCHHHHHHHHT--CHHH-HHHHSTTEEEEEEEETTEEEEEEE-ECCGGG-CEEEEEEEEEEEEETTTEE-EE
T ss_pred             CCceEEeCCCHHHHHHHHc--CHHH-HHhhCcchhhceecCCCEEEEEEE-Eeecce-eeeeEEEEEEeccCcccce-eE
Confidence            5788999999999999999  9876 899999999999876542222332 333322 1111344556656555443 33


Q ss_pred             EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651           85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE  125 (155)
Q Consensus        85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~  125 (155)
                      ........  ......+...+.+.++++|.++|+++|+..+
T Consensus        77 ~~~~~~~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~g  115 (147)
T d2pcsa1          77 LVNGEGGP--GFVNAEGVIDLTPINDECTQLTYTYSAEVGG  115 (147)
T ss_dssp             EEEEEETT--EEEEEEEEEEEEESSSSEEEEEEEEEEEEES
T ss_pred             eecccccc--chhcceeEEeeecccCCcEEEEEEEEEEECc
Confidence            32222211  4555666777777777899999999999754

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=99.06  E-value=3.1e-09  Score=75.53  Aligned_cols=144  Identities=8%  Similarity=-0.071  Sum_probs=88.9

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      ..++.+.+|+||+++||+++.  |... +++|++. --++...+.+..+|....+.+....|..-.+.-++..+++.+ .
T Consensus        12 ~~i~i~r~i~Ap~e~Vw~a~t--dpe~-l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~~~~~~g~v~~i~~~~-r   87 (163)
T d1xuva_          12 QEIIITREFDAPRELVFKAFT--DPDL-YTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPE-R   87 (163)
T ss_dssp             SEEEEEEEESSCHHHHHHHHH--CHHH-HTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTT-E
T ss_pred             ceEEEEEEeCCCHHHHHHHHc--ChHH-hhhccCCCCccceeeeeeceeCceEEEEEEecCCCceEEEEEEEEecCCC-E
Confidence            467888899999999999998  7754 7888743 323344556645555544554332133445788899997765 5


Q ss_pred             EEEEEE-eCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhh
Q 031651           82 RVTDVV-EGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        82 ~~Y~il-eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                      ++|+.- ++...  +-.....++.+++.++|+|.+.++..|...............+.-..++..|++||-+
T Consensus        88 l~~tw~~~~~~~--~~~~~~v~~~~e~~~~g~t~~~~~~~~~~~~~~~~~~~~g~~~GW~~~L~~L~~~le~  157 (163)
T d1xuva_          88 IISTFEFEGLPE--KGHVILDTARFEALPGDRTKLTSHSVFQTIEDRDGMLQSGMEEGINDSYERLDELLEK  157 (163)
T ss_dssp             EEEEEEETTSSS--SCCCEEEEEEEEEETTTEEEEEEEEECSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeccCCCC--CCCcEEEEEEEEEeCCCcEEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666653 33222  2223468899999988888888876664321110000001245566777888888754

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.03  E-value=3.2e-09  Score=73.85  Aligned_cols=102  Identities=14%  Similarity=0.052  Sum_probs=73.6

Q ss_pred             cceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            2 KGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         2 ~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      -.+.+.+|+|++|+++||+++.  |+.+ +|+|+|++.+++..+|+    .  .+......|   .++-++.. |..++.
T Consensus         4 ~~~~~~~i~I~~p~~~v~~~~~--d~~~-~p~w~~~l~~~~~~~~~----~--~~~~~~~~G---~~~~~i~~-~~p~~~   70 (133)
T d2qpva1           4 MQSRIIHLSVEKPWAEVYDFAA--NPGN-MPRWAAGLAGGLEADGE----D--WIAKGGPLG---EVRVNFAP-HNEFGV   70 (133)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHH--CGGG-GGGTCGGGTTCCEEETT----E--EEEECSSSC---EEEEEECC-CCSSCB
T ss_pred             ceEEEEEEEECCCHHHHHHHHh--Chhh-cchhhhccceeEEecCC----c--EEEEecCCC---cEEEEEEE-cCCCCE
Confidence            3578899999999999999999  9987 89999998888765542    2  344433213   56677775 688999


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL  123 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~  123 (155)
                      +.|+...|+..     .-..++++.+.++ +|.+.|+. |.+
T Consensus        71 i~w~~~~~~~~-----~g~v~fr~~~~g~-gt~v~~~~-~~p  105 (133)
T d2qpva1          71 IDHVVTLPDGL-----KVYNALRVTPNGS-GTEVSFTL-LRL  105 (133)
T ss_dssp             CCEEEECTTSC-----EEEEEEEEEEETT-EEEEEEEE-ECC
T ss_pred             EEEEEecCCCC-----EEEEEEEEccCCC-eEEEEEEE-EeC
Confidence            99999877642     1234677777654 57777765 443

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=98.79  E-value=5.3e-08  Score=68.10  Aligned_cols=111  Identities=14%  Similarity=0.182  Sum_probs=76.3

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC-CCCceEEEEEecCCC-CCcceEEEEEEEEeCCCCe
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD-GGVGTILHIKFKPGT-PGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd-g~~GsvR~~~~~~g~-~~~~~~kErl~~~D~~~~~   81 (155)
                      ..+.+-.|++||+++|+++.  |+.+ .|.|+|..+++++++.. ..-|......+..+. +.......+ ...+..++.
T Consensus         3 ~~~~~~vi~~~~e~vf~vV~--Dve~-Yp~FlP~c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   78 (148)
T d1t17a_           3 RHVVTKVLPYTPDQLFELVG--DVDA-YPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATR-VRRDKDARS   78 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHT--TTTC-CSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEE-EEEETTTCE
T ss_pred             cceEEEEeCCCHHHHHHHHH--HHHh-hhhhccccCccEEEecccccccceeeEEEEEEeeeeEEEEEEE-eeecCCceE
Confidence            45667789999999999999  9987 79999998888776553 222333333333221 222233333 336677777


Q ss_pred             EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031651           82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR  124 (155)
Q Consensus        82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~  124 (155)
                      +.....+|.     ++...+..++.|.++ +|.|+|.++|+-.
T Consensus        79 ~~~~~~~g~-----f~~l~~~W~f~~~~~-~T~V~~~l~fe~~  115 (148)
T d1t17a_          79 IDVSLLYGP-----FKRLNNGWRFMPEGD-ATRVEFVIEFAFK  115 (148)
T ss_dssp             EEEEESSTT-----SSCEEEEEEEEEETT-EEEEEEEEEECCS
T ss_pred             EEEeccCch-----hhhcccceeeccCCC-ceEEEEEEEEEEC
Confidence            777665443     455689999999876 6999999999854

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.70  E-value=8.9e-07  Score=62.46  Aligned_cols=142  Identities=8%  Similarity=-0.014  Sum_probs=85.5

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhc-CC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~-P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      .++.+..++||+++||+++.  |... +++|. |. ... ...+.+-.+|..-.+.+....+....+.-++.++++ ++.
T Consensus         8 ~i~ier~i~Ap~e~Vw~a~t--dpe~-l~~W~~p~~~~~-~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~v~e~~p-~~~   82 (164)
T d2il5a1           8 EVEIEKLYKFSPELVYEAWT--KKDL-LKQWFMTSARTN-KEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVM-DEY   82 (164)
T ss_dssp             EEEEEEEESSCHHHHHHHTT--CHHH-HTTTSSSCTTTE-EEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEET-TTE
T ss_pred             EEEEEEEECCCHHHHHHHHc--CHHH-HhCcccCCCccc-eEEEeecccCceEEEEEecCCcceEEEEEEEEEEcC-CCE
Confidence            46677779999999999998  7754 77776 43 333 234556455555445443221333356778888855 456


Q ss_pred             EEEEE-EeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch----------hhHHHHHHHHHHHHHHH
Q 031651           82 RVTDV-VEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF----------VSIDTVAKIAEISKNYL  150 (155)
Q Consensus        82 ~~Y~i-leg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~----------~~~~~~~~~~k~~e~~l  150 (155)
                      +.|+. .++...  +.  ...++.+.+.++|+|.++++.++.+..+.......          ...+....++..|.+||
T Consensus        83 i~~t~~~~~~~~--~~--~~~~~~~~e~~~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l  158 (164)
T d2il5a1          83 VKMTIGMPGLSE--TQ--DVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVI  158 (164)
T ss_dssp             EEEEESCC--CC--CC--EEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeccCCCC--Cc--eEEEEEEEEcCCCCEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66665 222221  22  24566666777789999999888876543211100          12355667788888888


Q ss_pred             hhCC
Q 031651          151 LNNR  154 (155)
Q Consensus       151 ~~~~  154 (155)
                      -.-+
T Consensus       159 E~g~  162 (164)
T d2il5a1         159 ETST  162 (164)
T ss_dssp             HTTS
T ss_pred             hccC
Confidence            6543

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.47  E-value=8.7e-07  Score=62.57  Aligned_cols=144  Identities=10%  Similarity=0.061  Sum_probs=81.5

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhc-CC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV   81 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~-P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~   81 (155)
                      .+..+.+++||+++||+++.  |.. .+.+|+ |. ..... .++|-.+|..-.+.+....|..-...-++.++++. +.
T Consensus         6 ~l~i~r~i~ap~e~Vw~a~t--dpe-~~~~W~~p~~~~~~~-~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~ei~p~-~r   80 (165)
T d1xfsa_           6 DLMLKRELAVPVNLVWRGLT--EPE-LLKKWFVPKPWSISD-CRVDLRPGGEFYTVMQDPEGNKFPNSGCFLEVTDE-KR   80 (165)
T ss_dssp             EEEEEEEESSCHHHHHHHHH--CHH-HHTTTSSCTTCEEEE-EEECCSTTCEEEEEEECTTCCEEEEEEEEEEEETT-TE
T ss_pred             EEEEEEEEcCCHHHHHHHHc--CHH-HHhhcCCCCCcccee-ecccceeCceEEEEEECCCCceeeEEEEEEEecCC-cE
Confidence            57778889999999999998  764 477775 54 43333 45664455544444432213333456678888554 56


Q ss_pred             EEEEE--EeC----------CccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHH
Q 031651           82 RVTDV--VEG----------GYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNY  149 (155)
Q Consensus        82 ~~Y~i--leg----------~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~  149 (155)
                      +.|+.  -.+          +... .-.....++.+.+.++ +|.++.+..+....+..........+.-..++..|++|
T Consensus        81 l~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~l~~~~~-gT~lt~~~~~~~~~~~~~~~~~g~~~GW~~~l~~L~~~  158 (165)
T d1xfsa_          81 LIWTSALVKNYRPAVPATTSDKEC-AHIVMTAVIELQPTSS-GTRYTACAMHNTPGQRKLHEEMGFHEGWGTTITQLEEL  158 (165)
T ss_dssp             EEEESSEEGGGEECCC------------CCEEEEEEEECSS-SEEEEEEEECSSHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecccccccccccccccCC-CCccEEEEEEEEEcCC-cEEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66643  111          0000 1111246788888655 68888876544322211111111345566788889999


Q ss_pred             HhhCC
Q 031651          150 LLNNR  154 (155)
Q Consensus       150 l~~~~  154 (155)
                      |-+++
T Consensus       159 le~~~  163 (165)
T d1xfsa_         159 LKQEK  163 (165)
T ss_dssp             HHHHS
T ss_pred             HHhcC
Confidence            87653

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.37  E-value=5e-05  Score=51.72  Aligned_cols=138  Identities=8%  Similarity=-0.041  Sum_probs=81.0

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcC-CcceEEEEcCCCCCceEEEEEec--CCCCCcceEEEEEEEEeCCC
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYD-TVEEIEVVEGDGGVGTILHIKFK--PGTPGFAGYKEKFIEIDNKK   79 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P-~v~s~e~~eGdg~~GsvR~~~~~--~g~~~~~~~kErl~~~D~~~   79 (155)
                      .+++.+..|+||+++||+++.  |.. .+.+|++ .--.+...+++-.+|..-.+.+.  ++ |..-.+.=++..+++.+
T Consensus         2 ~ti~~~r~i~ap~e~Vw~a~T--dp~-~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~-g~~~~~~g~v~~~~p~~   77 (143)
T d1z94a1           2 NTIRLHRVLSAPPERVYRAFL--DPL-ALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFAS-GQKHAFGGRYLELVPGE   77 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHHTT--CHH-HHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTT-CCEEEEEEEEEEEETTT
T ss_pred             cEEEEEEEECCCHHHHHHHhc--CHH-HHhhhhCCCCccceeEeeccccceeEEEEEeeCCC-CcEEEEEEEEEEecCCe
Confidence            367888899999999999998  764 4778764 32233334566455554444432  33 33344666888886555


Q ss_pred             CeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhh
Q 031651           80 RVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLN  152 (155)
Q Consensus        80 ~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~  152 (155)
                       .+.|+....+... + .....++++.+.++ +|.++.+  .....+.  .........-..++..|++||-+
T Consensus        78 -~i~~t~~~~~~~~-~-~~~~v~~~l~~~~~-gT~lt~~--~~~~~~~--~~~~~~~~GW~~~l~~L~~~lE~  142 (143)
T d1z94a1          78 -RIRYTDRFDDAGL-P-GDMITTITLAPLSC-GADLSIV--QEGIPDA--IPPENCYLGWQQSLKQLAALVEP  142 (143)
T ss_dssp             -EEEEEEEESCCC-----CEEEEEEEEEETT-EEEEEEE--EECCCTT--SCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             -EEEEEEeccCCCC-C-CcEEEEEEEEEcCC-CEEEEEE--EEcCCCh--hHHHHHHHHHHHHHHHHHHHHcC
Confidence             4777764433221 1 22356788888876 5766544  3322221  11122445566777888888744

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.11  E-value=4.6e-05  Score=51.83  Aligned_cols=138  Identities=8%  Similarity=-0.112  Sum_probs=73.8

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcC-CcceEEE--EcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCC
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYD-TVEEIEV--VEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKR   80 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P-~v~s~e~--~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~   80 (155)
                      .+..+.+++||+++||+++-  |... +.+|++ .--.+..  .+.+-.+|---.+.+....|....+.-++..+++.++
T Consensus         2 el~i~r~i~a~~e~Vw~a~t--dp~~-l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~~~~~g~v~~~~p~~r   78 (143)
T d3elia1           2 DLRLEREFAVAPEALFAWVS--DGAK-LLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQS   78 (143)
T ss_dssp             EEEEEEEESSCHHHHHHHTT--CHHH-HHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEETTTE
T ss_pred             eEEEEEEECCCHHHHHHHhc--CHHH-HhhhcCCCCceeeeeeEEEeeccCccEEEEEECCCCcEEEEEEEEEEcCCCCE
Confidence            36778889999999999998  7754 677763 3111111  1122233333333333321333356678888977654


Q ss_pred             -eEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651           81 -VRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL  151 (155)
Q Consensus        81 -~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~  151 (155)
                       .+++.+...+..  +-..-..++.+.|.++ +|.++.+-  ....+.  .......+.-..++..|++||.
T Consensus        79 l~~t~~~~~~~~~--~~~~~~vt~~l~~~~~-gT~l~~~~--~~~~~~--~~~~~~~~GW~~~L~~L~~~lA  143 (143)
T d3elia1          79 VGFTWGWHDDDDR--RGAESHVMFIVEPCAK-GARLILDH--RELGDD--EMSLRHEEGWTSSLRKLAAELA  143 (143)
T ss_dssp             EEEEEEEECTTSC--EEEEEEEEEECCBC---CEEEEEEE--ESCSCH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecCCCCC--CCCcEEEEEEEEEcCC-CEEEEEEE--EcCCCH--HHHHHHHHHHHHHHHHHHHHhC
Confidence             234444443321  1222345677778765 58776552  222111  1111245666677788888773

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=97.99  E-value=0.0003  Score=47.51  Aligned_cols=93  Identities=13%  Similarity=0.158  Sum_probs=60.7

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      .++.++.|+||+++||+++.  |.. .+.+|++..      +.+.++|..-.+....  +   .+.=++.++++ ++.+.
T Consensus         6 ~i~~~~~i~ap~e~Vw~alt--~p~-~~~~W~~~~------~~~~~~g~~~~~~~~~--~---~~~g~v~~~~~-~~~l~   70 (138)
T d1xn5a_           6 DIKKEVRFNAPIEKVWEAVS--TSE-GLAFWFMEN------DLKAETGHHFHLQSPF--G---PSPCQVTDVER-PIKLS   70 (138)
T ss_dssp             CEEEEEEESSCHHHHHHHTT--SHH-HHHTTSCCB------CCCSCTTCEEEEECSS--C---EEEEEEEEEET-TTEEE
T ss_pred             eEEEEEEECCCHHHHHHHHc--CHH-HhceEccCC------cccccceeeEEecCCc--c---ceeEEEEEEeC-CcEEE
Confidence            58899999999999999998  764 578888642      1122344433333222  2   45667888855 56788


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEE
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIE  120 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~  120 (155)
                      |+.-.++        ...++.+.|.++ +|.++++-+
T Consensus        71 ~~~~~~~--------~~v~~~l~~~~~-gT~lt~~~~   98 (138)
T d1xn5a_          71 FTWDTDG--------WSVTFHLKEEEN-GTIFTIVHS   98 (138)
T ss_dssp             EEETTTT--------EEEEEEEEECSS-SEEEEEEEE
T ss_pred             EEecCCC--------eEEEEEEEEcCC-cEEEEEEEe
Confidence            8862221        256788888664 688776643

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.92  E-value=9.9e-05  Score=52.19  Aligned_cols=90  Identities=12%  Similarity=0.170  Sum_probs=60.9

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCC-ceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGV-GTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~-GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      ++.+..|++|+++||+++-  |... +.+|++......+     .+ |.+ .+.+.++     ...-++.+++ .++.+.
T Consensus        14 f~~er~i~ap~e~Vw~AlT--dpe~-l~~W~~~~~~~d~-----~~GG~~-~~~~~~~-----~~~~~v~~~e-pp~rL~   78 (160)
T d2nn5a1          14 FGTERAISASPQTIWRYLT--ETDK-LKQWFPELEIGEL-----GVNGFW-RFILPDF-----EETMPFTDYA-EEKYLG   78 (160)
T ss_dssp             EEEEEEESSCHHHHHHHHH--CHHH-HHHHCTTEEEEEC-----STTCEE-EEEETTE-----EEEEEEEEEE-TTTEEE
T ss_pred             EEEEEEecCCHHHHHHHHc--CHHH-HHhhCCCCCcccc-----cCCCee-EEEcCCC-----CcceEEEEEe-cCCEEE
Confidence            4566779999999999998  7754 7899986433222     22 344 4566544     3556788885 677888


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEE
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI  119 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~  119 (155)
                      |+-  +.-        ..++++.+.++|+|.+.-+=
T Consensus        79 ~tW--~~~--------~v~~eL~~~~~~~t~l~l~~  104 (160)
T d2nn5a1          79 VTW--DTG--------IIYFDLKEQAPHQTLLVFSE  104 (160)
T ss_dssp             EEE--TTE--------EEEEEEEEEETTEEEEEEEE
T ss_pred             EEe--cCc--------eEEEEEecCCCCeEEEEEEE
Confidence            886  221        34788888877777776543

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=97.76  E-value=7.1e-05  Score=51.49  Aligned_cols=92  Identities=13%  Similarity=0.134  Sum_probs=59.5

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV   83 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   83 (155)
                      .+..++.|+||+++||+++.  |.. .+.+|++.- .     .+-.+|..  +++....+   .+.=++.++++ ++.+.
T Consensus         9 ~i~~~~~i~ap~e~Vw~alT--dp~-~l~~W~~~~-~-----~~~~~G~~--~~~~~~~g---~~~g~v~~~~p-~~~l~   73 (143)
T d1xn6a_           9 DIKQTIVFNASIQKVWSVVS--TAE-GIASWFMPN-D-----FVLEVGHE--FHVQSPFG---PSPCKVLEIDE-PNHLS   73 (143)
T ss_dssp             CEEEEEEESSCHHHHHHTTS--CSH-HHHTTSCCB-C-----CCCCTTCE--ECBCCTTC---CCCEEEEEEET-TTEEE
T ss_pred             eEEEEEEECCCHHHHHHHhc--ChH-HhceEeecc-C-----cccccCce--EEEecccc---ceeEEEEEEeC-CcEEE
Confidence            58899999999999999998  765 478888531 1     11123332  33432112   23456778855 56788


Q ss_pred             EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEE
Q 031651           84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKST  118 (155)
Q Consensus        84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~  118 (155)
                      |+.-.++        ...++.+++.++|+|.++.+
T Consensus        74 ~tw~~~~--------~~v~~~l~~~~~G~T~l~l~  100 (143)
T d1xn6a_          74 FSWDTDG--------WVVSFDLKDLGDNKTEFTLI  100 (143)
T ss_dssp             EEETTTT--------EEEEEEEEEEETTEEEEEEE
T ss_pred             EEEcCCC--------cEEEEEEEEcCCCcEEEEEE
Confidence            8862111        25688888988888887754

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.46  E-value=0.0055  Score=42.68  Aligned_cols=103  Identities=14%  Similarity=0.041  Sum_probs=62.6

Q ss_pred             EEEEEEecCCh---------HhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEE
Q 031651            5 LSHELEVNVPA---------GQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEI   75 (155)
Q Consensus         5 ~~~~i~i~apa---------~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~   75 (155)
                      .++-|+||-|.         +++|+-+-  --..--....|++.+|++++.+ +-+-.|.++|+++     .++|++...
T Consensus         3 feHlv~IN~p~~p~~p~LTr~QlW~GL~--lrar~p~~Fv~~l~~c~v~~~~-~~~~~Rel~fg~~-----~v~e~Vtl~   74 (151)
T d2ffsa1           3 FEHLVQVNDRTLVDLPVLDRLQLWEGLV--CRAREPQYFVVGLERFEILVDD-GDRLHRRLYLPGL-----VVEDEVVLK   74 (151)
T ss_dssp             EEEEEECCCCCC---CCCCHHHHHHHHH--HHHHCGGGTCTTCCEEEEEEEC-SSEEEEEEEETTE-----EEEEEEEEE
T ss_pred             ceEEEecCCCCCCCCCccCHHHHHHHHH--HhhcCHhhcccccceEEEEEec-CCeEEEEEEECCc-----eeEEEEEEc
Confidence            56677777653         58998774  1111112345779999999766 3478999999665     799998853


Q ss_pred             eCCCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651           76 DNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL  123 (155)
Q Consensus        76 D~~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~  123 (155)
                        ....+.|.+..-..-  .-.  +.++.++..++|.  .-.++.|+.
T Consensus        75 --~~~~v~f~~~a~~~~--~g~--~l~~~Ieep~~g~--L~lrf~Ye~  114 (151)
T d2ffsa1          75 --APDSAHYSIKPSAEV--AGG--SLDMTIEEPEPGS--LFVRFAYCT  114 (151)
T ss_dssp             --TTTEEEEEECCCSSS--BEE--EEEEEEEEEETTE--EEEEEEEEE
T ss_pred             --CCcEEEEEcccccCC--CCc--EEEEEEccCCCCe--EEEEEEEEc
Confidence              455668877542211  122  3445554444443  334556764

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=97.41  E-value=9.3e-05  Score=51.12  Aligned_cols=103  Identities=12%  Similarity=0.068  Sum_probs=57.3

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCC------cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeC
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT------VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDN   77 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~------v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~   77 (155)
                      .+.++++|+||+++||++|-  |  . +++|.|.      +....+..+.|  |..+ +...+|.   ..+.=++.++++
T Consensus         5 ~v~~~~~i~Ap~e~Vf~a~t--e--~-~~~Ww~~~~~~~~~~~~~~~~~~g--G~~~-~~~~dG~---~~~~g~v~ei~p   73 (155)
T d1zxfa1           5 FVRHSVTVKADRKTAFKTFL--E--G-FPEWWPNNFRTTKVGAPLGVDKKG--GRWY-EIDEQGE---EHTFGLIRKVDE   73 (155)
T ss_dssp             CEEEEEEESSHHHHHHHHHT--T--C-SSSSSSGGGSTTTTCSSCEEETTT--TEEE-CCCTTTS---CCCCEEEEEEET
T ss_pred             eEEEEEEEeCCHHHHHHHHH--h--h-hHhhcCCCCCCceEEEEEEeeCCC--ceEE-EEccccc---eeeeEEEEEEec
Confidence            37889999999999999996  5  2 4566542      22222222222  4433 2233331   234447888855


Q ss_pred             CCCeEEEEEEeCCc-cCcCceEEEEEEEEEeeCCCceEEEEE
Q 031651           78 KKRVRVTDVVEGGY-LDVGFTLFRVIFEIIEKGSDSCIIKST  118 (155)
Q Consensus        78 ~~~~~~Y~ileg~~-~~~~~~~y~~ti~v~~~~~g~s~v~W~  118 (155)
                      . +.+.|+---++. ...+-.....++.+++.++|+|.++-+
T Consensus        74 ~-~rl~~tw~~~~~~~~~~~~~s~v~~~~~~~~~~~T~ltl~  114 (155)
T d1zxfa1          74 P-DTLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVE  114 (155)
T ss_dssp             T-TEEEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEE
T ss_pred             C-cEEEEEEecCCccccccccceEEEEEEEecCCCCEEEEEE
Confidence            5 467776432221 100111235678888887777776644

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00069  Score=45.87  Aligned_cols=100  Identities=10%  Similarity=0.069  Sum_probs=59.0

Q ss_pred             eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCC-eE
Q 031651            4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKR-VR   82 (155)
Q Consensus         4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~-~~   82 (155)
                      +++.+.+++||+++||+++-  |.. .+.+|+..-..     .+-.+|..  +.+..+     .+.=++..+++.++ .+
T Consensus         5 ~i~~~r~~~ap~e~Vw~a~t--dpe-~l~~W~~~~~~-----~d~~~Gg~--f~~~~g-----~~~G~~~ev~p~~rlv~   69 (132)
T d1x53a1           5 KITLKETFLTSPEELYRVFT--TQE-LVQAFTHAPAT-----LEADRGGK--FHMVDG-----NVSGEFTDLVPEKHIVM   69 (132)
T ss_dssp             EEEEEEEESSCHHHHHHHTT--CHH-HHHHHSCSCCB-----CCCSTTCC--CBBTTT-----TEECCEEEEETTTEEEE
T ss_pred             EEEEEEEECCCHHHHHHHHc--CHH-HHHhhhCCccc-----cccccCCE--EEEEec-----ceeEEEEEEeCCCEEEE
Confidence            57788889999999999998  764 47888843222     23223321  223333     23446677866554 23


Q ss_pred             EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651           83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL  123 (155)
Q Consensus        83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~  123 (155)
                      ++++-+.+. . .++  ..++.+++.+ ++|.++.+-+.-|
T Consensus        70 tw~~~~~~~-~-~~s--~vt~~l~~~~-~~T~l~l~~~g~p  105 (132)
T d1x53a1          70 KWRFKSWPE-G-HFA--TITLTFIDKN-GETELCMEGRGIP  105 (132)
T ss_dssp             EEEETTSCT-T-CCE--EEEEECCBCS-SCEEEEEEEEEEE
T ss_pred             EEecCCCCC-C-CcE--EEEEEEEECC-CcEEEEEEEECCC
Confidence            444433322 1 233  4577777865 5688887766554

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=97.08  E-value=0.0034  Score=44.30  Aligned_cols=101  Identities=15%  Similarity=0.136  Sum_probs=61.9

Q ss_pred             ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCC-------------CCcceEE
Q 031651            3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGT-------------PGFAGYK   69 (155)
Q Consensus         3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~-------------~~~~~~k   69 (155)
                      ..++.+..++||+++||+++.  |.. .+.+|+...      +.+-.+|..-.+.+..+.             +..-.+.
T Consensus        19 ~~l~~er~~~Ap~e~VW~AlT--dpe-~l~~W~~p~------~~d~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (183)
T d2k5ga1          19 QSIRFERLLPGPIERVWAWLA--DAD-KRARWLAGG------ELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVAR   89 (183)
T ss_dssp             SSEEEEEEESSSSHHHHHHHH--CHH-HHTTTSCCC------CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEE
T ss_pred             ceEEEEEEeCCCHHHHHHHHh--ChH-HHhhhcCCC------CccccCCCEEEEEecCCCCcccccccccccCCCceeEE
Confidence            468889999999999999998  764 477887421      122233333334432110             0112466


Q ss_pred             EEEEEEeCCCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEE
Q 031651           70 EKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKST  118 (155)
Q Consensus        70 Erl~~~D~~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~  118 (155)
                      =++.++++ .+.+.|+.-.++..  +.+  ..++.+.+.++ +|.++-+
T Consensus        90 g~v~~~~p-~~rl~~tw~~~~~~--~~s--~v~~~l~~~g~-gT~ltl~  132 (183)
T d2k5ga1          90 HTLLRCEP-PRVLALTWGGGAGE--APS--EVLFELSEAGE-QVRLVLT  132 (183)
T ss_dssp             EEEEEEET-TTEEEEECCCCSSS--SCC--EEEEEEEECSS-SEEEEEE
T ss_pred             EEEEEEeC-CeEEEEEeccCCCC--CcE--EEEEEEEEcCC-cEEEEEE
Confidence            78888965 66788887555432  233  45777888764 5776544

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.051  Score=38.03  Aligned_cols=141  Identities=8%  Similarity=-0.128  Sum_probs=79.1

Q ss_pred             EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCC---cc-eEEEEEEEEeCCCC
Q 031651            5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPG---FA-GYKEKFIEIDNKKR   80 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~---~~-~~kErl~~~D~~~~   80 (155)
                      +..+.++++|++++++++.  |... .++|.|.+.++++++..+.-..+-...+....++   .+ .+--+...-++...
T Consensus        46 ~r~~~~i~~~~~~v~~~l~--d~~~-~~~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~~v~~RD~v~~~~~~~~~~~~  122 (199)
T d1jssa_          46 YKAQGVMDDVVNNVIDHIR--PGPW-RLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGL  122 (199)
T ss_dssp             EEEEEEESSCHHHHHHHHS--SSTT-HHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEE
T ss_pred             EEEEEEeCCCHHHHHHHHh--Chhh-hhhcccchheEEEEEEcCCCcEEEEEEEcccCCCCcCCcEEEEEEEEEEcCCcE
Confidence            5677889999999999998  8755 7899999999999987533233433323211011   11 22222222333333


Q ss_pred             eEEEEEEeCCccCcC---ceEEEEEEEEEeeCCC--ceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHH
Q 031651           81 VRVTDVVEGGYLDVG---FTLFRVIFEIIEKGSD--SCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYL  150 (155)
Q Consensus        81 ~~~Y~ileg~~~~~~---~~~y~~ti~v~~~~~g--~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l  150 (155)
                      .+........+....   ...+.+...+.|.++|  +|.++|.+..++.+.  .|.-.   .+.......++.|...|
T Consensus       123 ~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~Lr~~l  198 (199)
T d1jssa_         123 LSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM--IPQSAVDTAMASTLANFYSDLRKGL  198 (199)
T ss_dssp             EEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC--CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333322222222112   2344566777887654  689999999998765  33321   12344445555555543

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.48  Score=32.99  Aligned_cols=143  Identities=8%  Similarity=-0.049  Sum_probs=79.8

Q ss_pred             EEEEEEecCChHhHhc-hhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEec-CCCCCc---ceEEEEEEEEeCCC
Q 031651            5 LSHELEVNVPAGQAWE-LYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFK-PGTPGF---AGYKEKFIEIDNKK   79 (155)
Q Consensus         5 ~~~~i~i~apa~kvW~-~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~-~g~~~~---~~~kErl~~~D~~~   79 (155)
                      +..+.++++|+++++. ++.  |... .++|.|.+.++++++--+.-..+-...+. ...+..   ..+--|-...++..
T Consensus        54 ~k~~~~i~~~~~~v~~~~~~--d~e~-~~~Wd~~~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~RD~v~~~~~~~~~~~  130 (214)
T d1em2a_          54 FILKTFLPCPAELVYQEVIL--QPER-MVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDR  130 (214)
T ss_dssp             EEEEEEESSCHHHHHHHTTT--CHHH-HTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSE
T ss_pred             EEEEEEEeCCHHHHHHHHHh--ChHH-HHHHHHHHhheEEEEEcCCCceEEEEEecccCCCCCCCcEEEEEEEEEEcCCc
Confidence            4567789999999986 665  7754 78999998888888753211122222222 111111   23444444455555


Q ss_pred             CeEEEEEEeCC--ccCcCc---eEEEEEEEEEeeC--CCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHH
Q 031651           80 RVRVTDVVEGG--YLDVGF---TLFRVIFEIIEKG--SDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNY  149 (155)
Q Consensus        80 ~~~~Y~ileg~--~~~~~~---~~y~~ti~v~~~~--~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~  149 (155)
                      ..+...-+.-+  +....+   ..+.+..-+.|.+  +++|.++|....+|.+.-  |.-.   .+.......++.|..+
T Consensus       131 ~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P~~lvn~~~~~~~~~~~~~Lrk~  208 (214)
T d1em2a_         131 YLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGRL--PRYLIHQSLAATMFEFAFHLRQR  208 (214)
T ss_dssp             EEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSSS--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCCCCC--CHHHHHHHHHHhHHHHHHHHHHH
Confidence            44444443322  111122   3344555566644  357999999999987753  3211   1234455566777666


Q ss_pred             Hhh
Q 031651          150 LLN  152 (155)
Q Consensus       150 l~~  152 (155)
                      +.+
T Consensus       209 ~~k  211 (214)
T d1em2a_         209 ISE  211 (214)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=1.7  Score=29.66  Aligned_cols=140  Identities=9%  Similarity=-0.060  Sum_probs=74.3

Q ss_pred             EEEEEEec-CChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCC-cc-eE-EEEEEEEeCCCC
Q 031651            5 LSHELEVN-VPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPG-FA-GY-KEKFIEIDNKKR   80 (155)
Q Consensus         5 ~~~~i~i~-apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~-~~-~~-kErl~~~D~~~~   80 (155)
                      +..+.+|. +|+++++.++.  |... .++|.|.+.++.....++.  .+-.+.+....+- .+ .+ .-+....+++..
T Consensus        47 ~k~~~~i~~~~~~~~~~~l~--d~~~-~~~Wd~~~~~~~~~~~~~~--~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~~~  121 (203)
T d1ln1a_          47 YKVFGVLEDCSPTLLADIYM--DSDY-RKQWDQYVKELYEQECNGE--TVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGR  121 (203)
T ss_dssp             EEEEEEETTSCHHHHHHHHH--CHHH-HHHHCTTEEEEEEEEETTE--EEEEEEECCCTTSCCEEEEEEEEEEEECSTTC
T ss_pred             EEEEEEEcCCCHHHHHHHHc--CHhH-hhhhcccceEEEEEccCCc--EEEEEEcccccccCCceEEEEEEEEEccCCCC
Confidence            45566784 99999999998  7754 7899999666543322221  2223333322110 11 12 112223334433


Q ss_pred             eEEEEEEe--C--C-ccCc---CceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHH
Q 031651           81 VRVTDVVE--G--G-YLDV---GFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNY  149 (155)
Q Consensus        81 ~~~Y~ile--g--~-~~~~---~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~  149 (155)
                      .+...+..  .  . +...   ....+.+.+-++|.++++|.+++....+|.+.  .|.-.   ..+.....+++.|...
T Consensus       122 ~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~l~k~  199 (203)
T d1ln1a_         122 KIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ--IPSWLINWAAKNGVPNFLKDMARA  199 (203)
T ss_dssp             CEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC--CCHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             eEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEEEEEcCCCCc--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322211  1  1 1000   23345677788898888899999998888754  33211   1344445556655554


Q ss_pred             Hh
Q 031651          150 LL  151 (155)
Q Consensus       150 l~  151 (155)
                      ++
T Consensus       200 ~~  201 (203)
T d1ln1a_         200 CQ  201 (203)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43