Citrus Sinensis ID: 031669

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MQGGPAVAETTAARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLRGEGAVGGADMSAAFIRKKATEVGARVDAIESALHNTPDQEIPPPHNDSGFLNRVDLNKLPDPEDLDGADWQTN
Secondary Structure (PSIPRED)
cccccccHHHHHHHccccccccccccccccccEEEEcccccccccEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEcEEEcccccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MQGGPAVAETTAARKrsmdrpykgirmrkwGKWVAEIRepnkrsriwlgsystpVAAARAYDTAVFylrgpsarlnfpdllrgegavggaDMSAAFIRKKATEVGARVDAIESalhntpdqeippphndsgflnrvdlnklpdpedldgadwqtn
Flexible Loop (DISEMBL)
mqggpavaettaarkrsmdrpykgirmrkwgkwvaeirepnkrsriwlgSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLRGEGAVGGADMSAAFIRKKATEVGARVDAIESALhntpdqeippphndSGFLNRVDLNklpdpedldgadwqtn
Low Complexity Region (SEG)
MQGGPAVAETTAARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLRGEGAVGGADMSAAFIRKKATEVGARVDAIESALHNTPDQEIPPPHNDSGFLNRVDLNKLPDPEDLDGADWQTN
Disordered region (IsUnstruct)
**********************KGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLRGEGAVGGADMSAAFIRKKATEVGARV***********************************************
Disordered Region (DISOPRED)
**************************MRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDL***********************************************************************WQ**
Disordered Region (DISEMBL)
******************DRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLRGEGAVGGADMSAAFIRKKATEVGARVDAIESALHNTPDQEIPPPHNDSGFLNRVDLNKLPDPEDLDGADWQTN
Disordered Region (DISPRO)
******************DRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLR********DMSAAFIRKKATEVGARVDAIESALHN**************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQGGPAVAETTAARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLRGEGAVGGADMSAAFIRKKATEVGARVDAIESALHNTPDQEIPPPHNDSGFLNRVDLNKLPDPEDLDGADWQTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
O22174	176	Ethylene-responsive trans	yes	no	0.896	0.789	0.651	9e-45
Q9SNE1	153	Ethylene-responsive trans	no	no	0.929	0.941	0.642	3e-44
Q9FH94	184	Ethylene-responsive trans	no	no	0.974	0.820	0.567	6e-44
Q9SW63	196	Ethylene-responsive trans	no	no	0.916	0.724	0.584	2e-41
Q8LC30	153	Ethylene-responsive trans	no	no	0.780	0.790	0.606	4e-37
Q8W3M3	150	Ethylene-responsive trans	no	no	0.729	0.753	0.630	2e-34
Q84QC2	185	Ethylene-responsive trans	no	no	0.406	0.340	0.666	1e-19
Q9SFE4	230	Ethylene-responsive trans	no	no	0.367	0.247	0.701	1e-19
O65665	272	Ethylene-responsive trans	no	no	0.851	0.485	0.362	2e-19
Q9S7L5	195	Ethylene-responsive trans	no	no	0.477	0.379	0.581	6e-19

>sp|O22174|ERF08_ARATH Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1

 Score =  178 bits (452), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 99/152 (65%), Positives = 111/152 (73%), Gaps = 13/152 (8%)

Query: 12  AARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGP 71
             RKR + +PYKGIRMRKWGKWVAEIREPNKRSRIWLGSY+TP AAARAYDTAVFYLRGP
Sbjct: 19  GTRKRDL-KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGP 77

Query: 72  SARLNFPDLLRG----EGAVGGADMSAAFIRKKATEVGARVDAIESAL------HNTPDQ 121
           SARLNFP+LL G     G   G D+SAA+IR+KA EVGA+VDA+ + +       N  D 
Sbjct: 78  SARLNFPELLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQVDALGATVVVNTGGENRGDY 137

Query: 122 EIPPPHNDS--GFLNRVDLNKLPDPEDLDGAD 151
           E       S  G L RVDLNKLPDPE+ DG D
Sbjct: 138 EKIENCRKSGNGSLERVDLNKLPDPENSDGDD 169

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SNE1|ERF11_ARATH Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1

 Score =  177 bits (448), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/151 (64%), Positives = 110/151 (72%), Gaps = 7/151 (4%)

Query: 1   MQGGPAVAETTAARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARA 60
           M  G AV    A + +  +RP+KGIRMRKWGKWVAEIREPNKRSR+WLGSYSTP AAARA
Sbjct: 1   MDAGVAVKADVAVKMKR-ERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARA 59

Query: 61  YDTAVFYLRGPSARLNFPDLLRGEGAVGGADMSAAFIRKKATEVGARVDAI-ESALHNTP 119
           YDTAVFYLRGP+A LNFP+LL    A    DMSAA IRKKATEVGA+VDAI  + + N  
Sbjct: 60  YDTAVFYLRGPTATLNFPELLPCTSA---EDMSAATIRKKATEVGAQVDAIGATVVQNNK 116

Query: 120 DQEIPPPHND--SGFLNRVDLNKLPDPEDLD 148
            + +     D   G L  VDLNKLPDPE+LD
Sbjct: 117 RRRVFSQKRDFGGGLLELVDLNKLPDPENLD 147

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH94|ERF10_ARATH Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1

 Score =  176 bits (445), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/185 (56%), Positives = 120/185 (64%), Gaps = 34/185 (18%)

Query: 1   MQGGPAVAETTAARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARA 60
           M+GG  VA+      R  DRPYKGIRMRKWGKWVAEIREPNKRSR+WLGSYSTP AAARA
Sbjct: 1   MEGG-GVADVAVPGTRKRDRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARA 59

Query: 61  YDTAVFYLRGPSARLNFPDLLRGEGAVGGADMSAAFIRKKATEVGARVDAIESALHNT-- 118
           YDTAVFYLRGP+ARLNFP+LL GE      DMSAA IRKKATEVGA+VDA+ +A+ N   
Sbjct: 60  YDTAVFYLRGPTARLNFPELLPGE-KFSDEDMSAATIRKKATEVGAQVDALGTAVQNNRH 118

Query: 119 --------PDQEIPPPHND-------------------SG--FLNRVDLNKLPDPEDLDG 149
                    D +    H +                   SG   L+RVDLNKLPDPE  D 
Sbjct: 119 RVFGQNRDSDVDNKNFHRNYQNGEREEEEEDEDDKRLRSGGRLLDRVDLNKLPDPESSD- 177

Query: 150 ADWQT 154
            +W++
Sbjct: 178 EEWES 182

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW63|RA210_ARATH Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1

 Score =  167 bits (424), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/183 (58%), Positives = 116/183 (63%), Gaps = 41/183 (22%)

Query: 5   PAV-AETTAARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDT 63
           PAV     A RKR  D+PYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTP AAARAYDT
Sbjct: 14  PAVTVAAVATRKR--DKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDT 71

Query: 64  AVFYLRGPSARLNFPDLL--------RGEGAVGGADMSAAFIRKKATEVGARVDAIESA- 114
           AVFYLRGPSARLNFP+LL         G G  GG DMSAA+IR+KA EVGA+VDA+E+A 
Sbjct: 72  AVFYLRGPSARLNFPELLAGVTVTGGGGGGVNGGGDMSAAYIRRKAAEVGAQVDALEAAG 131

Query: 115 -------------------LHNTPDQEIP----PPHNDSGF------LNRVDLNKLPDPE 145
                              + N  D  I        +  GF      L RVDLNKLPDPE
Sbjct: 132 AGGNRHHHHHQHQRGNHDYVDNHSDYRINDDLMECSSKEGFKRCNGSLERVDLNKLPDPE 191

Query: 146 DLD 148
             D
Sbjct: 192 TSD 194

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC30|RAP21_ARATH Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1

 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 96/132 (72%), Gaps = 11/132 (8%)

Query: 20  RPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPD 79
           +PY+GIR RKWGKWVAEIREPNKRSR+WLGSY+T +AAARAYD AVFYLRGPSARLNFPD
Sbjct: 29  KPYRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPD 88

Query: 80  LLRGE----GAVGGADMSAAFIRKKATEVGARVDAIESALHNTPDQEIPPPHNDSGFLNR 135
           LL  E     A   ADM AA IR+KA EVGARVDA+ ++   +     PP       + +
Sbjct: 89  LLLQEEDHLSAATTADMPAALIREKAAEVGARVDALLASAAPSMAHSTPP-------VIK 141

Query: 136 VDLNKLPDPEDL 147
            DLN++P+  D+
Sbjct: 142 PDLNQIPESGDI 153

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3M3|RAP29_ARATH Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 91/130 (70%), Gaps = 17/130 (13%)

Query: 17  SMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLN 76
           S ++ YKGIRMRKWGKWVAEIREPNKRSRIWLGSY T VAAARAYDTAVFYLRGPSARLN
Sbjct: 31  SNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLN 90

Query: 77  FPDLLRGE---GAVGGADMSAAFIRKKATEVGARVDAIESALHNTPDQEIPPPHNDSGFL 133
           FP+ +  +   G   G DMS   IRKKA EVGARVDA E  L N               +
Sbjct: 91  FPEEVFKDGNGGEGLGGDMSPTLIRKKAAEVGARVDA-ELRLENR-------------MV 136

Query: 134 NRVDLNKLPD 143
             +D+NKLP+
Sbjct: 137 ENLDMNKLPE 146

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84QC2|ERF17_ARATH Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 49/63 (77%)

Query: 17 SMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLN 76
          SM   YKG+R RKWGKWV+EIR PN R RIWLGSY TP  AARA+D A++ LRG +A+ N
Sbjct: 7  SMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFN 66

Query: 77 FPD 79
          FPD
Sbjct: 67 FPD 69

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFE4|ERF12_ARATH Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 47/57 (82%)

Query: 22  YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFP 78
           YKG+RMR WG WV+EIR PN+++RIWLGSYST  AAARAYD A+  L+GP A LNFP
Sbjct: 50  YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFP 106

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O65665|ERF60_ARATH Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 77/149 (51%), Gaps = 17/149 (11%)

Query: 14  RKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSA 73
           +  +  + Y+G+R R WGKWVAEIR P  R+R+WLG++ T   AA AYD A + LRG  A
Sbjct: 85  KNMTAQKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFA 144

Query: 74  RLNFPDLLRGEGAVGGADMSAAFIRKKATEVGARVDAIESALHNTPDQEIP-------PP 126
           RLNFP     +G  GG     +      + V A++  I  +L  T D ++P       PP
Sbjct: 145 RLNFPQFRHEDGYYGG----GSCFNPLHSSVDAKLQEICQSLRKTEDIDLPCSETELFPP 200

Query: 127 -----HNDSGFLNRVDLNKLPDPEDLDGA 150
                 ++ GFL R D N   D   ++ +
Sbjct: 201 KTEYQESEYGFL-RSDENSFSDESHVESS 228

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7L5|ERF18_ARATH Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 50/74 (67%)

Query: 6  AVAETTAARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAV 65
          A+ E    R  +M   YKG+R RKWGKWV+EIR P+ R RIWLGSY TP  AARA+D A 
Sbjct: 5  AMKEEEKKRNTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQ 64

Query: 66 FYLRGPSARLNFPD 79
          F LRG  A  NFP+
Sbjct: 65 FCLRGGDANFNFPN 78

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
292668967	157	AP2 domain class transcription factor [M	0.903	0.891	0.688	3e-48
255647478	177	unknown [Glycine max]	0.935	0.819	0.654	3e-46
356541774	177	PREDICTED: ethylene-responsive transcrip	0.935	0.819	0.648	7e-46
449448306	173	PREDICTED: ethylene-responsive transcrip	0.838	0.751	0.713	1e-45
407317213	185	ethylene-responsive element binding fact	0.967	0.810	0.643	2e-45
161138190	167	dehydration responsive element-binding p	0.935	0.868	0.670	4e-45
161138174	168	dehydration responsive element-binding p	0.916	0.845	0.654	2e-44
224084378	187	AP2/ERF domain-containing transcription	0.954	0.791	0.610	1e-43
161138178	168	dehydration responsive element-binding p	0.916	0.845	0.647	2e-43
388513775	182	unknown [Medicago truncatula]	0.870	0.741	0.619	2e-43

>gi|292668967|gb|ADE41138.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/154 (68%), Positives = 121/154 (78%), Gaps = 14/154 (9%)

Query: 11  TAARKRSM--DRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYL 68
           TA RKR++  D+PYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYL
Sbjct: 7   TANRKRAVENDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYL 66

Query: 69  RGPSARLNFPDLLRGE-GAVGGADMSAAFIRKKATEVGARVDAIESALHNTPDQ------ 121
           RGPSARLNFP+ L  E G  G  DMSAA IRK+ATEVGARVDA+E+A+ N          
Sbjct: 67  RGPSARLNFPEALAVEGGGCGCGDMSAASIRKRATEVGARVDAVETAMRNHRGSAGGNGD 126

Query: 122 --EIPPPHNDSGFLNRVDLNKLPDPEDLDGADWQ 153
             EI P    +GF++RVDLNK+PDPE+ +G +W 
Sbjct: 127 GAEIKPCV--AGFVDRVDLNKMPDPENSEG-EWN 157

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647478|gb|ACU24203.1| unknown [Glycine max]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 106/162 (65%), Positives = 120/162 (74%), Gaps = 17/162 (10%)

Query: 10  TTAARKRSMD----RPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAV 65
           T AA ++ ++    R YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAV
Sbjct: 17  TAAATRKVVEGADQRRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAV 76

Query: 66  FYLRGPSARLNFPDLLRGEGA---VGGADMSAAFIRKKATEVGARVDAIESALHNTPDQE 122
           FYLRGPSAR NFP+LL GEGA    GG DMSAAFIRKKA+EVGARVDA+++ LH+     
Sbjct: 77  FYLRGPSARFNFPELLIGEGAAAFTGGCDMSAAFIRKKASEVGARVDALQATLHHHHHHV 136

Query: 123 IPPPH-------NDSG-FLNR-VDLNKLPDPEDLDGADWQTN 155
           +PP           SG F  R VDLNK+P+PE  D  +W  N
Sbjct: 137 VPPRQLLFASCGGGSGDFAVRVVDLNKMPEPESSD-CEWNVN 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541774|ref|XP_003539348.1| PREDICTED: ethylene-responsive transcription factor ERF011-like [Glycine max]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 105/162 (64%), Positives = 119/162 (73%), Gaps = 17/162 (10%)

Query: 10  TTAARKRSMD----RPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAV 65
           T AA ++ ++    R YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAV
Sbjct: 17  TAAATRKVVEGADQRRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAV 76

Query: 66  FYLRGPSARLNFPDLLRGEGA---VGGADMSAAFIRKKATEVGARVDAIESALHNTPDQE 122
           FYLRGPSARLNFP+LL GEGA    GG DMSAA IRKKA+EVGARVDA+++ LH+     
Sbjct: 77  FYLRGPSARLNFPELLIGEGAAALTGGCDMSAASIRKKASEVGARVDALQATLHHHHHHV 136

Query: 123 IPPPHNDSG--------FLNR-VDLNKLPDPEDLDGADWQTN 155
           +PP    S         F  R VDLNK+P+PE  D  +W  N
Sbjct: 137 VPPRQLLSASCGGGSGDFAVRVVDLNKMPEPESSD-CEWNVN 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448306|ref|XP_004141907.1| PREDICTED: ethylene-responsive transcription factor ERF008-like [Cucumis sativus] gi|449525952|ref|XP_004169980.1| PREDICTED: ethylene-responsive transcription factor ERF008-like [Cucumis sativus]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/143 (71%), Positives = 109/143 (76%), Gaps = 13/143 (9%)

Query: 12  AARKRSM---DRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYL 68
           A RKRS     R YKGIRMRKWGKWVAEIREPNKRSRIWLGSYS+PVAAARAYDTAVFYL
Sbjct: 9   ATRKRSALDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYL 68

Query: 69  RGPSARLNFPDLLRGEG---AVGGADMSAAFIRKKATEVGARVDAIESAL-------HNT 118
           RGPSARLNFP+LL GEG     G  DMSAA IRKKATEVGARVDA+ES++       H+ 
Sbjct: 69  RGPSARLNFPELLAGEGRGITAGAGDMSAASIRKKATEVGARVDALESSVGQQSRSHHSH 128

Query: 119 PDQEIPPPHNDSGFLNRVDLNKL 141
                P     SGFL+RVDLNKL
Sbjct: 129 ASASPPETKGCSGFLDRVDLNKL 151

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407317213|gb|AFU07644.1| ethylene-responsive element binding factor 2 [Arachis hypogaea]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/157 (64%), Positives = 112/157 (71%), Gaps = 7/157 (4%)

Query: 2   QGGPAVAETTAARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAY 61
           +GG        A     +R YKGIRMRKWGKWVAEIREPNKRSR WLGSYSTP+AAARAY
Sbjct: 4   EGGERGTRKRVAESGGGERRYKGIRMRKWGKWVAEIREPNKRSRXWLGSYSTPIAAARAY 63

Query: 62  DTAVFYLRGPSARLNFPDLLRGE---GAVGGADMSAAFIRKKATEVGARVDAIESALHNT 118
           DTAVFYLRGPSARLNFP+LL GE     VG  DMSAA IRKKATEVGARVDA+++A  + 
Sbjct: 64  DTAVFYLRGPSARLNFPELLAGEPPPSLVGACDMSAASIRKKATEVGARVDALQAATLHH 123

Query: 119 PDQEIPPPHNDSG----FLNRVDLNKLPDPEDLDGAD 151
                PP    SG    F  RVDLNK+P+PED +  D
Sbjct: 124 HHLAAPPQELISGRSGDFAERVDLNKIPEPEDCEWVD 160

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|161138190|gb|ABX58051.1| dehydration responsive element-binding protein 1 [Glycine soja]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/155 (67%), Positives = 116/155 (74%), Gaps = 10/155 (6%)

Query: 10  TTAARKR--SMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFY 67
           TTAA ++    +R YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFY
Sbjct: 14  TTAATRKVEGAERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFY 73

Query: 68  LRGPSARLNFPDLLRGEG---AVGGADMSAAFIRKKATEVGARVDAIESALHNT---PDQ 121
           LRGPSARLNFP+LL  EG    V G DMSAA IRKKATEVGARVDA+++ LH+    P Q
Sbjct: 74  LRGPSARLNFPELLVREGPAALVAGCDMSAASIRKKATEVGARVDALQATLHHHYVPPRQ 133

Query: 122 EIPPPHNDSGFLNR-VDLNKLPDPEDLDGADWQTN 155
            +        F  R VDLNK+P+PE  D  +W  N
Sbjct: 134 LLSGGGGSGDFPVRVVDLNKMPEPESSD-CEWDVN 167

Source: Glycine soja

Species: Glycine soja

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|161138174|gb|ABX58043.1| dehydration responsive element-binding protein 1 [Glycine soja] gi|161138176|gb|ABX58044.1| dehydration responsive element-binding protein 1 [Glycine soja] gi|161138180|gb|ABX58046.1| dehydration responsive element-binding protein 1 [Glycine soja] gi|161138182|gb|ABX58047.1| dehydration responsive element-binding protein 1 [Glycine soja] gi|161138184|gb|ABX58048.1| dehydration responsive element-binding protein 1 [Glycine soja] gi|161138186|gb|ABX58049.1| dehydration responsive element-binding protein 1 [Glycine soja] gi|161138188|gb|ABX58050.1| dehydration responsive element-binding protein 1 [Glycine soja] gi|161138192|gb|ABX58052.1| dehydration responsive element-binding protein 1 [Glycine soja] gi|161138194|gb|ABX58053.1| dehydration responsive element-binding protein 1 [Glycine soja] gi|161138196|gb|ABX58054.1| dehydration responsive element-binding protein 1 [Glycine soja] gi|161138198|gb|ABX58057.1| dehydration responsive element-binding protein 1 [Glycine soja] gi|161138200|gb|ABX58055.1| dehydration responsive element-binding protein 1 [Glycine soja] gi|161138202|gb|ABX58056.1| dehydration responsive element-binding protein 1 [Glycine soja]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/159 (65%), Positives = 116/159 (72%), Gaps = 17/159 (10%)

Query: 10  TTAARKR--SMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFY 67
           TTAA ++    +R YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFY
Sbjct: 14  TTAATRKVEGAERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFY 73

Query: 68  LRGPSARLNFPDLLRGEG---AVGGADMSAAFIRKKATEVGARVDAIESALHNTPDQEIP 124
           LRGPSARLNFP+LL  EG    V G DMSAA IRKKATEVGARVDA+++ LH+     +P
Sbjct: 74  LRGPSARLNFPELLVREGPAALVAGCDMSAASIRKKATEVGARVDALQATLHH---HYVP 130

Query: 125 PPH-------NDSGFLNR-VDLNKLPDPEDLDGADWQTN 155
           P             F  R VDLNK+P+PE  D  +W  N
Sbjct: 131 PRQLLSGGGGGSGDFPVRVVDLNKMPEPESSD-CEWDVN 168

Source: Glycine soja

Species: Glycine soja

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084378|ref|XP_002307277.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372116|gb|ABQ62989.1| RAP2-like protein [Populus trichocarpa] gi|222856726|gb|EEE94273.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/172 (61%), Positives = 118/172 (68%), Gaps = 24/172 (13%)

Query: 6   AVAETTAARKRS---MDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYD 62
            V +  A RKR     +R YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYD
Sbjct: 4   GVDKEMATRKRGGMGSERQYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYD 63

Query: 63  TAVFYLRGPSARLNFPDLLRGEG-AVGGA--DMSAAFIRKKATEVGARVDAIESALHNTP 119
           TAVFYLRGPSARLNFP+ L GE  + GG+  DMSAA IRK+ATEVGARVDA E+AL++  
Sbjct: 64  TAVFYLRGPSARLNFPEFLAGENFSCGGSYGDMSAASIRKRATEVGARVDAFETALNHHH 123

Query: 120 DQEIPPPHN----------------DSGFLNR--VDLNKLPDPEDLDGADWQ 153
            +                       DS  L    VDLNK+PDPED DG +W+
Sbjct: 124 HRHHDDRQRNSSNSTSSNDNNETVVDSRELKSRPVDLNKVPDPEDSDGDEWE 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|161138178|gb|ABX58045.1| dehydration responsive element-binding protein 1 [Glycine soja]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/159 (64%), Positives = 115/159 (72%), Gaps = 17/159 (10%)

Query: 10  TTAARKR--SMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFY 67
           TTAA ++    +R YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFY
Sbjct: 14  TTAATRKVEGAERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFY 73

Query: 68  LRGPSARLNFPDLLRGEG---AVGGADMSAAFIRKKATEVGARVDAIESALHNTPDQEIP 124
           LRGPSAR NFP+LL  EG    V G DMSAA IRKKATEVGARVDA+++ LH+     +P
Sbjct: 74  LRGPSARPNFPELLVREGPAALVAGCDMSAASIRKKATEVGARVDALQATLHH---HYVP 130

Query: 125 PPH-------NDSGFLNR-VDLNKLPDPEDLDGADWQTN 155
           P             F  R VDLNK+P+PE  D  +W  N
Sbjct: 131 PRQLLSGGGGGSGDFPVRVVDLNKMPEPESSD-CEWDVN 168

Source: Glycine soja

Species: Glycine soja

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513775|gb|AFK44949.1| unknown [Medicago truncatula]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 111/163 (68%), Gaps = 28/163 (17%)

Query: 19  DRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFP 78
           +R YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTP+AAARAYDTAVFYLRGPSARLNFP
Sbjct: 22  ERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFP 81

Query: 79  DLLRGE--GAVGGADMSAAFIRKKATEVGARVDAIESAL-----------------HNTP 119
           +LL GE    VGG DMSAA IRKKATEVGARVDA ++ +                 HN  
Sbjct: 82  ELLNGENNAVVGGGDMSAATIRKKATEVGARVDAFQADVNHHSHSHSHNHNHPHLQHNRN 141

Query: 120 DQE--IPPPHNDSG-----FLNRVDLNKLPDPEDLDGADWQTN 155
                +P P    G     F  RVDLNK+P+PE  D  +W  N
Sbjct: 142 QHHRVMPVPELLEGDGSGDFAERVDLNKIPEPESFD--EWDVN 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2155498	184	DEAR2 "DREB and EAR motif prot	0.741	0.625	0.743	4.2e-47
TAIR|locus:2115005	196	RAP2.10 "related to AP2 10" [A	0.696	0.551	0.756	7.6e-46
TAIR|locus:2058641	176	DEAR3 "DREB and EAR motif prot	0.883	0.778	0.66	1.7e-43
TAIR|locus:2074765	153	CEJ1 "cooperatively regulated	0.929	0.941	0.649	5.7e-43
TAIR|locus:2825842	153	RAP2.1 "related to AP2 1" [Ara	0.780	0.790	0.606	1.5e-35
TAIR|locus:1005716457	150	RAP2.9 "related to AP2 9" [Ara	0.645	0.666	0.759	6.5e-35
TAIR|locus:2204730	244	AT1G77640 [Arabidopsis thalian	0.793	0.504	0.433	1.5e-21
TAIR|locus:2202200	185	AT1G19210 [Arabidopsis thalian	0.535	0.448	0.564	1e-20
TAIR|locus:2201103	230	DREB26 "dehydration response e	0.412	0.278	0.656	5.7e-20
TAIR|locus:2058764	194	ERF38 "ERF family protein 38"	0.380	0.304	0.627	7.3e-20

TAIR|locus:2155498 DEAR2 "DREB and EAR motif protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
 Identities = 87/117 (74%), Positives = 96/117 (82%)

Query:     1 MQGGPAVAETTAARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARA 60
             M+GG  VA+      R  DRPYKGIRMRKWGKWVAEIREPNKRSR+WLGSYSTP AAARA
Sbjct:     1 MEGG-GVADVAVPGTRKRDRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARA 59

Query:    61 YDTAVFYLRGPSARLNFPDLLRGEGAVGGADMSAAFIRKKATEVGARVDAIESALHN 117
             YDTAVFYLRGP+ARLNFP+LL GE      DMSAA IRKKATEVGA+VDA+ +A+ N
Sbjct:    60 YDTAVFYLRGPTARLNFPELLPGE-KFSDEDMSAATIRKKATEVGAQVDALGTAVQN 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2115005 RAP2.10 "related to AP2 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 90/119 (75%), Positives = 97/119 (81%)

Query:     5 PAVA-ETTAARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDT 63
             PAV     A RKR  D+PYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTP AAARAYDT
Sbjct:    14 PAVTVAAVATRKR--DKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDT 71

Query:    64 AVFYLRGPSARLNFPDLLRGE-------GAV-GGADMSAAFIRKKATEVGARVDAIESA 114
             AVFYLRGPSARLNFP+LL G        G V GG DMSAA+IR+KA EVGA+VDA+E+A
Sbjct:    72 AVFYLRGPSARLNFPELLAGVTVTGGGGGGVNGGGDMSAAYIRRKAAEVGAQVDALEAA 130

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2058641 DEAR3 "DREB and EAR motif protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 99/150 (66%), Positives = 112/150 (74%)

Query:    14 RKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSA 73
             RKR + +PYKGIRMRKWGKWVAEIREPNKRSRIWLGSY+TP AAARAYDTAVFYLRGPSA
Sbjct:    21 RKRDL-KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSA 79

Query:    74 RLNFPDLLRG----EGAVGGADMSAAFIRKKATEVGARVDAIESAL------HNTPDQE- 122
             RLNFP+LL G     G   G D+SAA+IR+KA EVGA+VDA+ + +       N  D E 
Sbjct:    80 RLNFPELLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQVDALGATVVVNTGGENRGDYEK 139

Query:   123 IPPPHND-SGFLNRVDLNKLPDPEDLDGAD 151
             I       +G L RVDLNKLPDPE+ DG D
Sbjct:   140 IENCRKSGNGSLERVDLNKLPDPENSDGDD 169

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2074765 CEJ1 "cooperatively regulated by ethylene and jasmonate 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 98/151 (64%), Positives = 109/151 (72%)

Query:     1 MQGGPAVAETTAARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARA 60
             M  G AV    A  K   +RP+KGIRMRKWGKWVAEIREPNKRSR+WLGSYSTP AAARA
Sbjct:     1 MDAGVAVKADVAV-KMKRERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARA 59

Query:    61 YDTAVFYLRGPSARLNFPDLLRGEGAVGGADMSAAFIRKKATEVGARVDAI-ESALHNTP 119
             YDTAVFYLRGP+A LNFP+LL    A    DMSAA IRKKATEVGA+VDAI  + + N  
Sbjct:    60 YDTAVFYLRGPTATLNFPELLPCTSA---EDMSAATIRKKATEVGAQVDAIGATVVQNNK 116

Query:   120 DQEIPPPHND--SGFLNRVDLNKLPDPEDLD 148
              + +     D   G L  VDLNKLPDPE+LD
Sbjct:   117 RRRVFSQKRDFGGGLLELVDLNKLPDPENLD 147

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=IEP

GO:0009617 "response to bacterium" evidence=IEP

GO:0010941 "regulation of cell death" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2825842 RAP2.1 "related to AP2 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 80/132 (60%), Positives = 96/132 (72%)

Query:    20 RPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPD 79
             +PY+GIR RKWGKWVAEIREPNKRSR+WLGSY+T +AAARAYD AVFYLRGPSARLNFPD
Sbjct:    29 KPYRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPD 88

Query:    80 LLRGE----GAVGGADMSAAFIRKKATEVGARVDAIESALHNTPDQEIPPPHNDSGFLNR 135
             LL  E     A   ADM AA IR+KA EVGARVDA+ ++   +     PP       + +
Sbjct:    89 LLLQEEDHLSAATTADMPAALIREKAAEVGARVDALLASAAPSMAHSTPP-------VIK 141

Query:   136 VDLNKLPDPEDL 147
              DLN++P+  D+
Sbjct:   142 PDLNQIPESGDI 153

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:1005716457 RAP2.9 "related to AP2 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 79/104 (75%), Positives = 83/104 (79%)

Query:    17 SMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLN 76
             S ++ YKGIRMRKWGKWVAEIREPNKRSRIWLGSY T VAAARAYDTAVFYLRGPSARLN
Sbjct:    31 SNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLN 90

Query:    77 FPDLL--RGEGAVG-GADMSAAFIRKKATEVGARVDAIESALHN 117
             FP+ +   G G  G G DMS   IRKKA EVGARVDA E  L N
Sbjct:    91 FPEEVFKDGNGGEGLGGDMSPTLIRKKAAEVGARVDA-ELRLEN 133

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2204730 AT1G77640 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 55/127 (43%), Positives = 73/127 (57%)

Query:     8 AETTAARKRSMD---RPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTA 64
             + T+A R +S     + YKG+RMR WG WV EIR PN+++RIWLGSYST  AAARAYD A
Sbjct:    26 SSTSALRHQSCKNKIKKYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAA 85

Query:    65 VFYLRGPSARLNFPDLLRGEGAVGGADMSAAFIRKKATEVGARVDAIESALHNTPDQEIP 124
             +  L+GP A LNFP++      +   D       K   +V A+  A  S+ H TP  +  
Sbjct:    86 LLCLKGPKANLNFPNITTTSPFLMNIDEKTLLSPKSIQKVAAQA-ANSSSDHFTPPSDEN 144

Query:   125 PPHNDSG 131
                +D G
Sbjct:   145 DHDHDDG 151

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2202200 AT1G19210 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 48/85 (56%), Positives = 59/85 (69%)

Query:    17 SMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLN 76
             SM   YKG+R RKWGKWV+EIR PN R RIWLGSY TP  AARA+D A++ LRG +A+ N
Sbjct:     7 SMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFN 66

Query:    77 FPDLLRGEGAVGGADMSAAFIRKKA 101
             FPD        GG ++S + IR+ A
Sbjct:    67 FPD--NPPVISGGRNLSRSEIREAA 89

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2201103 DREB26 "dehydration response element-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 42/64 (65%), Positives = 51/64 (79%)

Query:    15 KRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSAR 74
             K+S  + YKG+RMR WG WV+EIR PN+++RIWLGSYST  AAARAYD A+  L+GP A 
Sbjct:    43 KKSKIKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQAN 102

Query:    75 LNFP 78
             LNFP
Sbjct:   103 LNFP 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2058764 ERF38 "ERF family protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
 Identities = 37/59 (62%), Positives = 49/59 (83%)

Query:    22 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDL 80
             ++G+RMR+WGKWV+EIREP K+SRIWLG++ST   AARA+D A   ++G SA LNFP+L
Sbjct:    45 FRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPEL 103

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0009834 "secondary cell wall biogenesis" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22174	ERF08_ARATH	No assigned EC number	0.6513	0.8967	0.7897	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: RAP2L5 SubName- Full=RAP2-like protein; (187 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	7e-31
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	8e-26
pfam00847	53	pfam00847, AP2, AP2 domain	5e-10

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  105 bits (264), Expect = 7e-31
 Identities = 37/57 (64%), Positives = 44/57 (77%)

Query: 22 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFP 78
          Y+G+R R WGKWVAEIR+P+K  R+WLG++ T   AARAYD A F  RG SARLNFP
Sbjct: 2  YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFP 58

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 92.7 bits (231), Expect = 8e-26
 Identities = 37/59 (62%), Positives = 43/59 (72%)

Query: 22 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDL 80
          Y+G+R R WGKWVAEIR+P+   RIWLG++ T   AARAYD A   LRG SA LNFPD 
Sbjct: 3  YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 51.9 bits (125), Expect = 5e-10
 Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 4/52 (7%)

Query: 22 YKGIRMRK-WGKWVAEIREPNKRS--RIWLGSYSTPVAAARAYDTAVFYLRG 70
          YKG+R  K WG+WVAEIR+P ++   R  LG++ T   AARA   A   LRG
Sbjct: 3  YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.88
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.86
PHA00280	121	putative NHN endonuclease	99.68
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.25
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	84.72

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.88  E-value=1.2e-22  Score=134.79  Aligned_cols=61  Identities=61%  Similarity=1.112  Sum_probs=57.7

Q ss_pred             CCeeeEEecCCCcEEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 031669           20 RPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDL   80 (155)
Q Consensus        20 S~yrGV~~r~~gkw~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~~G~~a~lNFP~~   80 (155)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+|||+.|||.+++.++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            7899999988899999999976588999999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.86  E-value=1.7e-21  Score=130.75  Aligned_cols=63  Identities=60%  Similarity=1.141  Sum_probs=59.6

Q ss_pred             CeeeEEecCCCcEEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCcccC
Q 031669           21 PYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLRG   83 (155)
Q Consensus        21 ~yrGV~~r~~gkw~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~~G~~a~lNFP~~~~~   83 (155)
                      +|+||+++++|||+|+|+++.+++++|||+|+|+||||.|||.+++.++|.++.+|||.+.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999988999999999988889999999999999999999999999999999999998764

>PHA00280 putative NHN endonuclease

Probab=99.68  E-value=8.2e-17  Score=121.25  Aligned_cols=70  Identities=19%  Similarity=0.145  Sum_probs=63.1

Q ss_pred             CCCchhhhhHhhccCCCCCCeeeEEecC-CCcEEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhhcCCCCC
Q 031669            2 QGGPAVAETTAARKRSMDRPYKGIRMRK-WGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSAR   74 (155)
Q Consensus         2 ~~~~~~~~~~~~r~~~~~S~yrGV~~r~-~gkw~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~~G~~a~   74 (155)
                      .+++..+.+|++++++|+|||+||++.+ .|||+|+|.+  .+++++||.|+++|+|+.||+ ++.++||+||.
T Consensus        49 ~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         49 LALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             hcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            3577789999999999999999999874 6999999999  888899999999999999997 77789999985

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.25  E-value=1.5e-11  Score=79.52  Aligned_cols=52  Identities=35%  Similarity=0.469  Sum_probs=45.4

Q ss_pred             CCeeeEEecC-CCcEEEEEecCCC---CeeEeccCCCCHHHHHHHHHHHHHhhcCC
Q 031669           20 RPYKGIRMRK-WGKWVAEIREPNK---RSRIWLGSYSTPVAAARAYDTAVFYLRGP   71 (155)
Q Consensus        20 S~yrGV~~r~-~gkw~A~I~~~~~---~~ri~LGtf~t~eeAA~AYd~Aa~~~~G~   71 (155)
                      |+|+||++.+ .++|+|+|++...   +++++||.|+++++|+++|+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899999875 6999999999421   48999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=84.72  E-value=3.6  Score=25.31  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=29.8

Q ss_pred             cEEEEEe--c--CCCCeeEeccCCCCHHHHHHHHHHHHHhhc
Q 031669           32 KWVAEIR--E--PNKRSRIWLGSYSTPVAAARAYDTAVFYLR   69 (155)
Q Consensus        32 kw~A~I~--~--~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~~   69 (155)
                      +|...|.  .  .+++++++-+.|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5777773  3  345589999999999999999988776653

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		7e-12
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		1e-11

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 20 RPYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFP 78
          + Y+G+R R WGK+ AEIR+P K  +R+WLG++ T   AA AYD A F +RG  A LNFP
Sbjct: 4  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 22 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFP 78
          Y+G+R R WGK+ AEIR+P K  +R+WLG++ T   AA AYD A F +RG  A LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-26

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 93.5 bits (233), Expect = 2e-26
 Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 20 RPYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFP 78
          + Y+G+R R WGK+ AEIR+P K  +R+WLG++ T   AA AYD A F +RG  A LNFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	94.57
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	92.73
3jtz_A	88	Integrase; four stranded beta-sheet, DNA binding p	88.6
3ju0_A	108	Phage integrase; four stranded beta-sheet, DNA bin	82.95

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=7.5e-27  Score=156.44  Aligned_cols=61  Identities=52%  Similarity=0.983  Sum_probs=57.6

Q ss_pred             CeeeEEecCCCcEEEEEecCCC-CeeEeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 031669           21 PYKGIRMRKWGKWVAEIREPNK-RSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLL   81 (155)
Q Consensus        21 ~yrGV~~r~~gkw~A~I~~~~~-~~ri~LGtf~t~eeAA~AYd~Aa~~~~G~~a~lNFP~~~   81 (155)
                      +||||++++||||+|+|+++.+ +++||||+|+|+||||+|||.|+++++|.++.||||+++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            7999999999999999999875 689999999999999999999999999999999999863

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=94.57  E-value=0.0015  Score=49.94  Aligned_cols=55  Identities=9%  Similarity=0.029  Sum_probs=38.5

Q ss_pred             CchhhhhHhhccCCCCCCeeeEEecCCCcEEEEEecCCCCeeEeccCCCCHHHHHHHHH
Q 031669            4 GPAVAETTAARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYD   62 (155)
Q Consensus         4 ~~~~~~~~~~r~~~~~S~yrGV~~r~~gkw~A~I~~~~~~~ri~LGtf~t~eeAA~AYd   62 (155)
                      +...+.+++.+...+. .++||.....++|.+.|...   +.++||.|+|.+|||++|.
T Consensus        92 t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~~---~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           92 TQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVIS---PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             CHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEEC---TTSCEEEESCHHHHHHHHT
T ss_pred             CHHHHhhcccccCccc-ceeeeeeccCCCCceEEEEc---CCceEEeeCCHHHHHHHHC
Confidence            4556666666655442 25677543346788999884   4578999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=92.73  E-value=0.072  Score=36.34  Aligned_cols=26  Identities=23%  Similarity=0.427  Sum_probs=21.2

Q ss_pred             CCCCCeeeEEecC-CCcEEEEEecCCC
Q 031669           17 SMDRPYKGIRMRK-WGKWVAEIREPNK   42 (155)
Q Consensus        17 ~~~S~yrGV~~r~-~gkw~A~I~~~~~   42 (155)
                      ..+|+|.||++.+ .+.|+|+-.+.++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~   29 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGAS   29 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCe
Confidence            4689999999886 5899999998543

>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A

Probab=88.60  E-value=0.93  Score=30.96  Aligned_cols=44  Identities=27%  Similarity=0.395  Sum_probs=31.8

Q ss_pred             EEecCCC--cEEEEEecCCCCeeEeccCCC--CHHHHHHHHHHHHHhh
Q 031669           25 IRMRKWG--KWVAEIREPNKRSRIWLGSYS--TPVAAARAYDTAVFYL   68 (155)
Q Consensus        25 V~~r~~g--kw~A~I~~~~~~~ri~LGtf~--t~eeAA~AYd~Aa~~~   68 (155)
                      ++..+.|  .|+-+.+..++.+++.||.|.  |..+|....+.+...+
T Consensus        28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l   75 (88)
T 3jtz_A           28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML   75 (88)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence            4455554  599999988788899999997  5677766666555544

>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}

Probab=82.95  E-value=2.1  Score=30.33  Aligned_cols=44  Identities=25%  Similarity=0.304  Sum_probs=32.8

Q ss_pred             EEecCCC--cEEEEEecCCCCeeEeccCCC--CHHHHHHHHHHHHHhh
Q 031669           25 IRMRKWG--KWVAEIREPNKRSRIWLGSYS--TPVAAARAYDTAVFYL   68 (155)
Q Consensus        25 V~~r~~g--kw~A~I~~~~~~~ri~LGtf~--t~eeAA~AYd~Aa~~~   68 (155)
                      |+..+.|  .|+-+.+..++.+++.||.|.  |+.+|....+.+...+
T Consensus        28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l   75 (108)
T 3ju0_A           28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL   75 (108)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence            4455554  499999988788899999997  6777777766665555

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	7e-26

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.9 bits (226), Expect = 7e-26
 Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 20 RPYKGIRMRKWGKWVAEIREPNK-RSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFP 78
          + Y+G+R R WGK+ AEIR+P K  +R+WLG++ T   AA AYD A F +RG  A LNFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=8.3e-27  Score=154.87  Aligned_cols=60  Identities=53%  Similarity=0.990  Sum_probs=56.0

Q ss_pred             CeeeEEecCCCcEEEEEecCCC-CeeEeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 031669           21 PYKGIRMRKWGKWVAEIREPNK-RSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDL   80 (155)
Q Consensus        21 ~yrGV~~r~~gkw~A~I~~~~~-~~ri~LGtf~t~eeAA~AYd~Aa~~~~G~~a~lNFP~~   80 (155)
                      +||||+++++|||+|+|+++.. ++++|||+|+|+||||+|||.|+++++|+++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            5999999989999999998754 47999999999999999999999999999999999974