Citrus Sinensis ID: 031672

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEVFCLPCILMHCYVYFVVISITPASEV
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHccccccccccEEEEcccccccccccccEEEcccccccccccccEEccccccEEEEccEEEEEEEEEEEEccccccccccccEEEEEEcccccccccccccEEEcccEEEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHccccccccEEEcEEccccccccccccEEEEEcccccccccccEEEEcccccHEEccccEEEEEEEEEEEEccccccccccEEEEEEEEcccccccccccEEEEEEEEEEEEEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
mcpptastpidvdfastdenLFGSLermirgsplpcnvindvnpynhrpsnlpdgVWYLVCSkentsaqhgqwrakgetceifsnsyiigWRTTLEFfegqvpnerktDWVMQEFRITQkrlygdkkeevfclpcilmHCYVYFVVISITPASEV
Flexible Loop (DISEMBL)
mcpptastpidvdfasTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTsaqhgqwrakgetCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRItqkrlygdkKEEVFCLPCILMHCYVYFVVISITPASEV
Low Complexity Region (SEG)
MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEVFCLPCILMHCYVYFVVISITPASEV
Disordered region (IsUnstruct)
*******************NLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEVFCLPCILMHCYVYFVVISIT*****
Disordered Region (DISOPRED)
*****AS***DVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRI**************CLPCILMHCYVYFVV*********
Disordered Region (DISEMBL)
********PIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKEN**********KGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEVFCLPCILMHCYVYFVVISITPASEV
Disordered Region (DISPRO)
*******TPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEVFCLPCILMHCYVYFVVISITP****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEVFCLPCILMHCYVYFVVISITPASEV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q8GY42	323	NAC transcription factor	no	no	0.787	0.377	0.302	2e-10
Q9FLJ2	336	NAC domain-containing pro	no	no	0.722	0.333	0.281	8e-10
O49255	268	NAC transcription factor	no	no	0.787	0.455	0.297	2e-09
Q84K00	567	NAC domain-containing pro	no	no	0.703	0.192	0.291	2e-09
Q94F58	340	NAC domain-containing pro	no	no	0.658	0.3	0.310	4e-09
Q5Z6B6	276	NAC domain-containing pro	no	no	0.729	0.409	0.300	9e-09
Q9FWX2	395	NAC domain-containing pro	no	no	0.670	0.263	0.284	9e-09
Q93VY3	297	NAC domain-containing pro	no	no	0.819	0.427	0.298	1e-08
Q84TE6	324	NAC domain-containing pro	no	no	0.387	0.185	0.4	2e-08
Q84WP6	365	NAC domain-containing pro	no	no	0.722	0.306	0.282	2e-08

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 17/139 (12%)

Query: 1   MCPPTASTPIDVDFASTDENLF-GSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGV--- 56
           + P     P    F  TDE L    L++     PLP ++I +++ Y   P  LP      
Sbjct: 9   IGPGHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFG 68

Query: 57  ---WYLVCSKE---------NTSAQHGQWRAKGETCEIFS-NSYIIGWRTTLEFFEGQVP 103
              WY    ++         N +A  G W+A G    IF+ NS+ +G +  L F+ G+ P
Sbjct: 69  EHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVFYGGKPP 128

Query: 104 NERKTDWVMQEFRITQKRL 122
              KTDW+M E+R+T   L
Sbjct: 129 KGIKTDWIMHEYRLTDGNL 147

Transcription factor of the NAC family. May be associated with anther development and pollen production.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 16/128 (12%)

Query: 9   PIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVC 61
           P    F  TDE L    L + +  +      I +V+     P  LP      +  WY  C
Sbjct: 17  PPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMGEKEWYFFC 76

Query: 62  SKE---------NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVM 112
            ++         N + + G W+A G+  EI+    ++G + TL F+ G+ P  +KT+WVM
Sbjct: 77  VRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGQKTNWVM 136

Query: 113 QEFRITQK 120
            E+R+  K
Sbjct: 137 HEYRLEGK 144

Arabidopsis thaliana (taxid: 3702)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 16/138 (11%)

Query: 6   ASTPIDVDFASTDENLF-GSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WY 58
           ++ P    F  TDE L    L       P P ++I +V+ Y   P  LP+        WY
Sbjct: 7   STLPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWY 66

Query: 59  LVCSKE---------NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTD 109
               +E         N +A  G W+A G    I S S  +G +  L F++G+ P   KTD
Sbjct: 67  FFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKGRPPKGIKTD 126

Query: 110 WVMQEFRITQKRLYGDKK 127
           W+M E+R+   R    K+
Sbjct: 127 WIMHEYRLHDSRKASTKR 144

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 18/127 (14%)

Query: 14  FASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGV--------WYLVC--- 61
           F  TDE L    L+R +   P   + I+  + Y   P +LPD          WY      
Sbjct: 15  FHPTDEELVRYYLKRKVCNKPFKFDAISVTDIYKSEPWDLPDKSKLKSRDLEWYFFSMLD 74

Query: 62  ------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEF 115
                 SK N + + G W+  G+  EI + S ++G + TL + +G+ P   +T+WVM E+
Sbjct: 75  KKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVYHKGRAPRGERTNWVMHEY 134

Query: 116 RITQKRL 122
           R++ + L
Sbjct: 135 RLSDEDL 141

Arabidopsis thaliana (taxid: 3702)

>sp|Q94F58|NAC89_ARATH NAC domain-containing protein 89 OS=Arabidopsis thaliana GN=NAC089 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 17/119 (14%)

Query: 14  FASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPD-------GVWYLVC---- 61
           F+ TD  L    L+R + G      VI D+  YN  P +LPD         W+  C    
Sbjct: 27  FSPTDVELISYYLKRKMDGLERSVEVIPDLEIYNFEPWDLPDKSIVKSDSEWFFFCARGK 86

Query: 62  -----SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEF 115
                S+   + + G W+A G+  ++ S S +IG + TL F  G+ P   +TDW+M E+
Sbjct: 87  KYPHGSQNRRATKMGYWKATGKERDVKSGSEVIGTKRTLVFHIGRAPKGERTDWIMHEY 145

Transcription factor involved in plant cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z6B6|NAC76_ORYSJ NAC domain-containing protein 76 OS=Oryza sativa subsp. japonica GN=NAC76 PE=2 SV=2

 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 20/133 (15%)

Query: 7   STPIDVDFASTDENL-FGSLERMIRGSPLPCNVINDVNPYNHRPSNL---------PDGV 56
           S P    F  TDE L +  L + +    +  +VI +++     P +L         P   
Sbjct: 9   SVPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCRIGTGPQNE 68

Query: 57  WYLVCSKE---------NTSAQHGQWRAKGETCEIF-SNSYIIGWRTTLEFFEGQVPNER 106
           WY    K+         N +   G W+A G    IF +N+  IG R TL F+ G+ P+ +
Sbjct: 69  WYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLANACRIGMRKTLVFYVGRAPHGK 128

Query: 107 KTDWVMQEFRITQ 119
           KTDW+M E+R+ Q
Sbjct: 129 KTDWIMHEYRLDQ 141

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 19/123 (15%)

Query: 14  FASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPD---------GVWYLVCSK 63
           F  TDE L    L + +    +  + I D++ Y   P +L +           WY    K
Sbjct: 13  FHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQSDWYFFSHK 72

Query: 64  E---------NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQE 114
           +         N + + G W+A G    I+    +IG R TL F++G+ PN +K+DW+M E
Sbjct: 73  DKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQKSDWIMHE 132

Query: 115 FRI 117
           +R+
Sbjct: 133 YRL 135

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 17/144 (11%)

Query: 7   STPIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WYL 59
           S P    F  TDE L    L R + G      VI D++ Y   P +LP         WY 
Sbjct: 13  SLPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLYKFDPWDLPSKALFGEKEWYF 72

Query: 60  VC---------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDW 110
                      S+ N  A  G W+A G    I ++   +G +  L F+ G+ P   KT+W
Sbjct: 73  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRRVGIKKALVFYAGKAPKGTKTNW 132

Query: 111 VMQEFR-ITQKRLYGDKKEEVFCL 133
           +M E+R I   R +G  K + + L
Sbjct: 133 IMHEYRLIEHSRSHGSSKLDDWVL 156

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE6|NAC22_ARATH NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 58  YLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRI 117
           Y    + N +   G W+A G+   I     ++G R TL F++G+ P  RKTDWVM EFR+
Sbjct: 86  YATGLRTNRATATGYWKATGKDRTILRKGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRL 145

Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 19/131 (14%)

Query: 6   ASTPIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNL---------PDG 55
           +  P    F  T+E L    L + +    +  +VI DV+     P ++         P  
Sbjct: 14  SQVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTTPQN 73

Query: 56  VWYLVCSKE---------NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNER 106
            WY    K+         N +   G W+A G    I+SN   IG R TL F++G+ P+ +
Sbjct: 74  DWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRKTLVFYKGRAPHGQ 133

Query: 107 KTDWVMQEFRI 117
           K+DW+M E+R+
Sbjct: 134 KSDWIMHEYRL 144

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
118485763	415	unknown [Populus trichocarpa]	0.819	0.306	0.590	2e-37
224136574	385	NAC domain protein, IPR003441 [Populus t	0.819	0.329	0.590	3e-37
255538558	388	conserved hypothetical protein [Ricinus	0.767	0.306	0.616	3e-35
302398995	359	NAC domain class transcription factor [M	0.767	0.331	0.596	1e-33
225458374	383	PREDICTED: uncharacterized protein LOC10	0.748	0.302	0.547	5e-28
302142444	355	unnamed protein product [Vitis vinifera]	0.593	0.259	0.602	3e-24
449470009	199	PREDICTED: uncharacterized protein LOC10	0.916	0.713	0.403	8e-23
357168397	390	PREDICTED: NAC domain-containing protein	0.735	0.292	0.297	8e-11
255581418	349	NAC domain-containing protein, putative	0.754	0.335	0.308	2e-10
125550359	400	hypothetical protein OsI_18065 [Oryza sa	0.741	0.287	0.303	3e-10

>gi|118485763|gb|ABK94731.1| unknown [Populus trichocarpa]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 90/127 (70%)

Query: 1   MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLV 60
           MCPP +S   D+DF   DE LF  L ++  GSPLP NVI DVNPY + PSNLP+ +WYL+
Sbjct: 31  MCPPASSPVADIDFHCRDEELFMFLYKLTSGSPLPGNVITDVNPYIYAPSNLPEDIWYLL 90

Query: 61  CSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
             KEN     G W+ KGE C++FSNS I GWRTT EFFEGQVP+ERKTDW+MQE+ ITQK
Sbjct: 91  RVKENDDTGLGFWKVKGEACKLFSNSAITGWRTTFEFFEGQVPHERKTDWLMQEYWITQK 150

Query: 121 RLYGDKK 127
                +K
Sbjct: 151 EHIEKRK 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136574|ref|XP_002326894.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222835209|gb|EEE73644.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 90/127 (70%)

Query: 1   MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLV 60
           MCPP +S   D+DF   DE LF  L ++  GSPLP NVI DVNPY + PSNLP+ +WYL+
Sbjct: 1   MCPPASSPVADIDFHCRDEELFMFLYKLTSGSPLPGNVITDVNPYIYAPSNLPEDIWYLL 60

Query: 61  CSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
             KEN     G W+ KGE C++FSNS I GWRTT EFFEGQVP+ERKTDW+MQE+ ITQK
Sbjct: 61  RVKENDDTGLGFWKVKGEACKLFSNSAITGWRTTFEFFEGQVPHERKTDWLMQEYWITQK 120

Query: 121 RLYGDKK 127
                +K
Sbjct: 121 EHIEKRK 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538558|ref|XP_002510344.1| conserved hypothetical protein [Ricinus communis] gi|223551045|gb|EEF52531.1| conserved hypothetical protein [Ricinus communis]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 85/120 (70%), Gaps = 1/120 (0%)

Query: 1   MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLV 60
           M PP    P D+   ST E LF SLE+M  G PLP NVI DVNPYN+ PS LP G+WYL+
Sbjct: 1   MYPPPNPVP-DIGLNSTAEELFISLEKMAHGYPLPNNVITDVNPYNYSPSYLPQGIWYLI 59

Query: 61  CSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
            SKEN +   G W+ KGE  ++FS SYI GW TTLEFFEGQVP ERKT+W MQE+ ITQK
Sbjct: 60  RSKENGATDLGFWKVKGEASKLFSTSYITGWMTTLEFFEGQVPRERKTNWQMQEYWITQK 119

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398995|gb|ADL36792.1| NAC domain class transcription factor [Malus x domestica]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/119 (59%), Positives = 82/119 (68%)

Query: 1   MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLV 60
           M P +A+ P D+    TDE L  SLE++  GSPLP NVI DVNPY   PSNLPDG WY +
Sbjct: 1   MYPQSAALPADISLQCTDEELCVSLEKIQDGSPLPGNVIRDVNPYRCAPSNLPDGFWYFI 60

Query: 61  CSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQ 119
            S E+     GQWRAKGE   IFSNS I GWR TLEF+ GQ P+E KT+WVMQE+ ITQ
Sbjct: 61  RSSESNPTNIGQWRAKGEASRIFSNSSIYGWRATLEFYRGQAPHETKTNWVMQEYWITQ 119

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458374|ref|XP_002283395.1| PREDICTED: uncharacterized protein LOC100252228 [Vitis vinifera]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/117 (54%), Positives = 79/117 (67%), Gaps = 1/117 (0%)

Query: 4   PTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSK 63
           P+ S P ++    +DE LF  L+ MI GSPLP NV+ +VNPY H PS L D  WYL  S 
Sbjct: 5   PSVSPPNEISLYWSDEELFTCLQGMINGSPLPDNVMIEVNPYQHNPSCLSDRFWYLTSS- 63

Query: 64  ENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
           E+T    G W+ KGE  EIFSNS I GWRTT EF+EG  P+  KTDWV+Q+++ITQK
Sbjct: 64  EDTKFAEGFWKPKGEPYEIFSNSSITGWRTTFEFYEGTTPHVLKTDWVLQQYKITQK 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142444|emb|CBI19647.3| unnamed protein product [Vitis vinifera]

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 28  MIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSY 87
           MI GSPLP NV+ +VNPY H PS L D  WYL  S E+T    G W+ KGE  EIFSNS 
Sbjct: 1   MINGSPLPDNVMIEVNPYQHNPSCLSDRFWYLTSS-EDTKFAEGFWKPKGEPYEIFSNSS 59

Query: 88  IIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
           I GWRTT EF+EG  P+  KTDWV+Q+++ITQK
Sbjct: 60  ITGWRTTFEFYEGTTPHVLKTDWVLQQYKITQK 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470009|ref|XP_004152711.1| PREDICTED: uncharacterized protein LOC101220327 [Cucumis sativus]

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 85/151 (56%), Gaps = 9/151 (5%)

Query: 12  VDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHG 71
           +D  S+DE  F  L+R+ RG PLP NV+ D+NPY   P  LPDGVW+ V S  N  +   
Sbjct: 14  LDLFSSDEETFLELKRISRGGPLPANVL-DINPYGCNPKMLPDGVWFYVVSHGNADSSFS 72

Query: 72  QWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLY-GDKKEEV 130
            W+ K    ++FS+S   GWRTT E++EGQ P E KT W+MQ++ ++Q  L    K++E 
Sbjct: 73  PWKLKSGAWKLFSDSSFTGWRTTYEYYEGQAPYECKTAWIMQKYWMSQTDLSENSKQKET 132

Query: 131 FCLPCILM-------HCYVYFVVISITPASE 154
             L  I +       H     + +SIT  SE
Sbjct: 133 ISLCKIFLGDEQFQNHENTLKIDLSITLNSE 163

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357168397|ref|XP_003581627.1| PREDICTED: NAC domain-containing protein 78-like [Brachypodium distachyon]

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)

Query: 25  LERMIRGSPLPCNVINDVNPYNHRPSNLP--------DGVWYLVC---------SKENTS 67
           L+R + G PL CN + D++ Y   P  LP        D  WY  C         S+ N S
Sbjct: 23  LKRKLLGRPLRCNAVTDIDLYKFAPWELPEKASLQTGDREWYFFCMRDRKYSSGSRTNRS 82

Query: 68  AQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKK 127
            + G W+A G+   +   +  +G + TL F  G+ P   +TDWVM E+R+  K +     
Sbjct: 83  TEAGYWKATGKDRAVIHKNQTVGMKRTLVFHSGKPPQGTRTDWVMYEYRLVDKDISSSDV 142

Query: 128 EEVFCLPCILM 138
           +   C+ C + 
Sbjct: 143 KLDNCVLCKIF 153

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581418|ref|XP_002531517.1| NAC domain-containing protein, putative [Ricinus communis] gi|223528870|gb|EEF30871.1| NAC domain-containing protein, putative [Ricinus communis]

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 19/136 (13%)

Query: 1   MCPPTASTPIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPD--GV- 56
           M P  +  P    F  TDE L G  L + +    +  +VI D++ Y   P +L D  G+ 
Sbjct: 2   MEPMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQDRCGIG 61

Query: 57  ------WYLVCSKE---------NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQ 101
                 WY    K+         N +   G W+A G    ++  + +IG R TL F++G+
Sbjct: 62  YEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGR 121

Query: 102 VPNERKTDWVMQEFRI 117
            PN +KTDW+M E+R+
Sbjct: 122 APNGQKTDWIMHEYRL 137

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125550359|gb|EAY96181.1| hypothetical protein OsI_18065 [Oryza sativa Indica Group]

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 17/132 (12%)

Query: 25  LERMIRGSPLPCNVINDVNPYNHRPSNLP--------DGVWYLVC---------SKENTS 67
           L+R + G  L CN +++++ Y   P +LP        D  WY  C         S+ N S
Sbjct: 24  LKRKLLGKHLRCNAVSELDLYKFAPWDLPEKSSLQSKDREWYFFCPRDRKYSSGSRTNRS 83

Query: 68  AQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKK 127
            + G W+A G+   +  NS  +G + TL F  G+ P   +TDWVM E+R+  K L     
Sbjct: 84  TEAGYWKATGKDRPVIYNSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLEDKELSASGV 143

Query: 128 EEVFCLPCILMH 139
           +   C+ C +  
Sbjct: 144 KLDACVLCKIFQ 155

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2122219	377	NAC076 "NAC domain containing	0.432	0.177	0.342	5.5e-13
TAIR|locus:2060979	365	VND1 "vascular related NAC-dom	0.432	0.183	0.315	1.7e-12
TAIR|locus:2155046	292	NAC105 "NAC domain containing	0.529	0.280	0.311	3.6e-12
TAIR|locus:2051053	268	NAC041 "NAC domain containing	0.767	0.444	0.318	5.5e-12
TAIR|locus:2037920	652	NAC014 "NAC 014" [Arabidopsis	0.496	0.118	0.350	1.8e-11
TAIR|locus:2020123	301	NAC020 "NAC domain containing	0.529	0.272	0.284	1.8e-11
TAIR|locus:2128013	534	NTL9 "NAC transcription factor	0.496	0.144	0.337	2.7e-11
TAIR|locus:2026232	394	ANAC026 "Arabidopsis NAC domai	0.522	0.205	0.322	3.2e-11
TAIR|locus:2009729	631	NAC028 "NAC domain containing	0.380	0.093	0.338	7e-11
TAIR|locus:2153899	451	TIP "TCV-interacting protein"	0.419	0.144	0.393	9.4e-11

TAIR|locus:2122219 NAC076 "NAC domain containing protein 76" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
 Identities = 25/73 (34%), Positives = 42/73 (57%)

Query:    45 YNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPN 104
             ++H+    P G      ++ N +   G W+A G    ++  S +IG R TL F++G+ PN
Sbjct:    72 FSHKDKKYPTG------TRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPN 125

Query:   105 ERKTDWVMQEFRI 117
              +KTDW+M E+R+
Sbjct:   126 GQKTDWIMHEYRL 138

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2060979 VND1 "vascular related NAC-domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 23/73 (31%), Positives = 42/73 (57%)

Query:    45 YNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPN 104
             ++H+    P G      ++ N +   G W+A G    ++  + +IG R TL F++G+ PN
Sbjct:    71 FSHKDKKYPTG------TRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGRAPN 124

Query:   105 ERKTDWVMQEFRI 117
              +K+DW+M E+R+
Sbjct:   125 GKKSDWIMHEYRL 137

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2155046 NAC105 "NAC domain containing protein 105" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
 Identities = 28/90 (31%), Positives = 46/90 (51%)

Query:    45 YNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPN 104
             ++HR    P G      ++ N +   G W+A G    ++ NS +IG R TL F+ G+ PN
Sbjct:    74 FSHRDKKYPTG------TRTNRATVAGFWKATGRDKAVYLNSKLIGMRKTLVFYRGRAPN 127

Query:   105 ERKTDWVMQEFRITQKRLYGDKKEE--VFC 132
              +K+DW++ E+   +       +EE  V C
Sbjct:   128 GQKSDWIIHEYYSLESHQNSPPQEEGWVVC 157

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2051053 NAC041 "NAC domain containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 5.5e-12, P = 5.5e-12
 Identities = 43/135 (31%), Positives = 64/135 (47%)

Query:    14 FASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLP---DGVWYLVCSKE----- 64
             F  TDE L    L R + G PLP +VI + +     P +LP   +   Y   ++E     
Sbjct:    21 FHPTDEELVVQYLRRKVTGLPLPASVIPETDVCKSDPWDLPGDCESEMYFFSTREAKYPN 80

Query:    65 ----NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRIT-- 118
                 N S   G W+A G   +I     ++G + TL F++G+ PN  +T+WV+ E+R+   
Sbjct:    81 GNRSNRSTGSGYWKATGLDKQIGKKKLVVGMKKTLVFYKGKPPNGTRTNWVLHEYRLVDS 140

Query:   119 -QKRLYGDKKEEVFC 132
              Q  LYG     V C
Sbjct:   141 QQDSLYGQNMNWVLC 155

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2037920 NAC014 "NAC 014" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query:    63 KENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRL 122
             + N +   G W+A G+   I S   IIG + TL F+ G+ P   +T+W+M E+R T K L
Sbjct:    97 RSNRATDIGYWKATGKDRTIKSKKMIIGMKKTLVFYRGRAPRGERTNWIMHEYRATDKEL 156

Query:   123 YGDKKEEVFCLPCILMH 139
              G    +   + C L H
Sbjct:   157 DGTGPGQNPYVLCRLFH 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2020123 NAC020 "NAC domain containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query:    45 YNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPN 104
             Y+ R    P+G      S+ N + + G W+A G+   + S    +G + TL ++ G+ P+
Sbjct:    67 YSTRDKKYPNG------SRTNRATRAGYWKATGKDRTVESKKMKMGMKKTLVYYRGRAPH 120

Query:   105 ERKTDWVMQEFRITQKRLYGDKKEEVFC 132
               +T+WVM E+R+T       K+    C
Sbjct:   121 GLRTNWVMHEYRLTHAPSSSLKESYALC 148

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2128013 NTL9 "NAC transcription factor-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
 Identities = 26/77 (33%), Positives = 40/77 (51%)

Query:    63 KENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRL 122
             + N +   G W+A G+   I S   +IG + TL F+ G+ P   +T+W+M E+R T K L
Sbjct:    82 RSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVFYRGRAPKGERTNWIMHEYRPTLKDL 141

Query:   123 YGDKKEEVFCLPCILMH 139
              G    +   + C L H
Sbjct:   142 DGTSPGQSPYVLCRLFH 158

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

TAIR|locus:2026232 ANAC026 "Arabidopsis NAC domain containing protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query:    45 YNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPN 104
             ++H+    P G      ++ N + + G W+A G    I+    +IG R TL F++G+ PN
Sbjct:    69 FSHKDKKYPTG------TRTNRATKAGFWKATGRDKAIYIRHSLIGMRKTLVFYKGRAPN 122

Query:   105 ERKTDWVMQEFRITQKRLYGDKKEE--VFC 132
              +K+DW+M E+R+      G  +EE  V C
Sbjct:   123 GQKSDWIMHEYRLETSE-NGTPQEEGWVVC 151

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2009729 NAC028 "NAC domain containing protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
 Identities = 20/59 (33%), Positives = 40/59 (67%)

Query:    62 SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
             S+ N + + G W+A G+  ++ S+S ++G + TL ++ G+ P+  +TDWVM E+R+ ++
Sbjct:    78 SRTNRATKAGYWKATGKDRKVTSHSRMVGTKKTLVYYRGRAPHGSRTDWVMHEYRLEEQ 136

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2153899 TIP "TCV-interacting protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query:    62 SKENTSAQHGQWRAKGETCEIFSN-SYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
             S+ N +   G W+A G+  +I S  + IIG + TL F+ G+ P   +T W+M E+R T+K
Sbjct:    85 SRMNRATVAGYWKATGKDRKIKSGKTKIIGVKRTLVFYTGRAPKGTRTCWIMHEYRATEK 144

Query:   121 RLYGDK 126
              L G K
Sbjct:   145 DLDGTK 150

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0051607 "defense response to virus" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC139 NAC domain protein, IPR003441 (254 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	8e-22

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score = 84.6 bits (210), Expect = 8e-22
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 19/121 (15%)

Query: 17  TDENLFGS-LERMIRGSPLPC-NVINDVNPYNHRPSNLPDGV-------WYLVCSKE--- 64
           TDE L    L+R + G PLP  +VI +V+ Y   P +LPDG        WY    ++   
Sbjct: 10  TDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWYFFSPRDRKY 69

Query: 65  ------NTSAQHGQWRAKGETCEIFS-NSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRI 117
                 N +   G W+A G+   + S    ++G + TL F++G+ P   KTDWVM E+R+
Sbjct: 70  PNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGEKTDWVMHEYRL 129

Query: 118 T 118
            
Sbjct: 130 E 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=1.2e-43  Score=262.92  Aligned_cols=111  Identities=39%  Similarity=0.801  Sum_probs=92.8

Q ss_pred             CCCCeeEcCChHHHHH-HHHHHHcCCCCCC-CceeecCCCCCCCCCCC------CCceEEEEeec---------ccccCC
Q 031672            8 TPIDVDFASTDENLFG-SLERMIRGSPLPC-NVINDVNPYNHRPSNLP------DGVWYLVCSKE---------NTSAQH   70 (155)
Q Consensus         8 lp~G~RF~PtDeELv~-YL~~ki~g~plp~-~~I~~~Dvy~~~Pw~L~------~~~wyFF~~~~---------~r~~~~   70 (155)
                      |||||||+|||+|||. ||++|+.|.+++. ++|+++|||+.|||+|+      +++||||++++         +|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            8999999999999999 9999999999887 89999999999999999      67999999996         568899


Q ss_pred             CeEEecCcceeEee-CCeEEEEEEEEeeeeCcCCCCCCcCeEEEEEEeC
Q 031672           71 GQWRAKGETCEIFS-NSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRIT  118 (155)
Q Consensus        71 G~Wk~~g~~~~I~~-~g~~iG~k~~l~f~~~~~~~~~kT~W~M~EY~l~  118 (155)
                      |+||++|+.++|.+ +|.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        81 G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            99999999999999 8999999999999998888899999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		2e-09
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		4e-07
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		4e-07

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 16/127 (12%)
Query: 7   STPIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WYL 59
           + P    F  TD+ L    L R   G  LP  +I +V+ Y   P +LP+        WY 
Sbjct: 14  NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYF 73
Query: 60  VC---------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDW 110
                      S+ N +A +G W+A G    +      +G +  L F+ G+ P   KTDW
Sbjct: 74  FTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDW 133
Query: 111 VMQEFRI 117
           +M E+R+
Sbjct: 134 IMHEYRL 140

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 7   STPIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WYL 59
           S P    F  TDE L    L R   G      +I +++ Y   P  LP+        WY 
Sbjct: 19  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 78
Query: 60  VC---------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDW 110
                      S+ N  A  G W+A G    I +    +G +  L F+ G+ P   KT+W
Sbjct: 79  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNW 138
Query: 111 VMQEFRITQ 119
           +M E+R+ +
Sbjct: 139 IMHEYRLIE 147

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 7   STPIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WYL 59
           S P    F  TDE L    L R   G      +I +++ Y   P  LP+        WY 
Sbjct: 16  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 75
Query: 60  VC---------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDW 110
                      S+ N  A  G W+A G    I +    +G +  L F+ G+ P   KT+W
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNW 135
Query: 111 VMQEFRITQ 119
           +M E+R+ +
Sbjct: 136 IMHEYRLIE 144
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
1ut7_A	171	No apical meristem protein; transcription regulati	2e-22
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	3e-22

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score = 87.0 bits (216), Expect = 2e-22
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 19/135 (14%)

Query: 17  TDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCSKE----- 64
           TDE L    L R   G      +I +++ Y   P  LP      +  WY    ++     
Sbjct: 26  TDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPN 85

Query: 65  ----NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
               N  A  G W+A G    I +    +G +  L F+ G+ P   KT+W+M E+R+ + 
Sbjct: 86  GSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEP 145

Query: 121 RLYGDKKEE---VFC 132
                  +    V C
Sbjct: 146 SRRNGSTKLDDWVLC 160

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score = 86.2 bits (214), Expect = 3e-22
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 16/122 (13%)

Query: 17  TDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCSKE----- 64
           TD+ L    L R   G  LP  +I +V+ Y   P +LP         WY    ++     
Sbjct: 24  TDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPN 83

Query: 65  ----NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
               N +A +G W+A G    +      +G +  L F+ G+ P   KTDW+M E+R+   
Sbjct: 84  GSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADA 143

Query: 121 RL 122
             
Sbjct: 144 GR 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=5.1e-53  Score=327.93  Aligned_cols=134  Identities=28%  Similarity=0.566  Sum_probs=122.3

Q ss_pred             CCCCCCCeeEcCChHHHHH-HHHHHHcCCCCCCCceeecCCCCCCCCCCC------CCceEEEEeec---------cccc
Q 031672            5 TASTPIDVDFASTDENLFG-SLERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCSKE---------NTSA   68 (155)
Q Consensus         5 ~~~lp~G~RF~PtDeELv~-YL~~ki~g~plp~~~I~~~Dvy~~~Pw~L~------~~~wyFF~~~~---------~r~~   68 (155)
                      ...|||||||+|||||||. ||++|+.|.++|.++|+++|||++|||+||      +++||||+++.         +|++
T Consensus        12 ~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t   91 (174)
T 3ulx_A           12 ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAA   91 (174)
T ss_dssp             TTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEE
T ss_pred             ccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeec
Confidence            4489999999999999999 999999999999999999999999999999      57899999985         7899


Q ss_pred             CCCeEEecCcceeEeeCCeEEEEEEEEeeeeCcCCCCCCcCeEEEEEEeCCCCCCC--------CCCceEEEEeeEEe
Q 031672           69 QHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYG--------DKKEEVFCLPCILM  138 (155)
Q Consensus        69 ~~G~Wk~~g~~~~I~~~g~~iG~k~~l~f~~~~~~~~~kT~W~M~EY~l~~~~~~~--------~~~~~VlCki~~~~  138 (155)
                      ++|+||++|++++|.++|.+||+||+|+||.++++++.+|+|+||||+|.+.....        ..++|||||||++.
T Consensus        92 ~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~  169 (174)
T 3ulx_A           92 GNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK  169 (174)
T ss_dssp             TTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred             CCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence            99999999999999988999999999999999999999999999999999875431        35789999999764

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.8e-52  Score=324.13  Aligned_cols=135  Identities=27%  Similarity=0.510  Sum_probs=122.0

Q ss_pred             CCCCCCCeeEcCChHHHHH-HHHHHHcCCCCCCCceeecCCCCCCCCCCC------CCceEEEEeec---------cccc
Q 031672            5 TASTPIDVDFASTDENLFG-SLERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCSKE---------NTSA   68 (155)
Q Consensus         5 ~~~lp~G~RF~PtDeELv~-YL~~ki~g~plp~~~I~~~Dvy~~~Pw~L~------~~~wyFF~~~~---------~r~~   68 (155)
                      ...|||||||+|||||||. ||++|+.|.+++.++|+++|||.+|||+|+      +++||||+++.         +|++
T Consensus        14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t   93 (171)
T 1ut7_A           14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVA   93 (171)
T ss_dssp             SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEE
T ss_pred             ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccC
Confidence            3589999999999999999 999999999999999999999999999998      67899999985         7899


Q ss_pred             CCCeEEecCcceeEeeCCeEEEEEEEEeeeeCcCCCCCCcCeEEEEEEeCCCCCC---CCCCceEEEEeeEEee
Q 031672           69 QHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLY---GDKKEEVFCLPCILMH  139 (155)
Q Consensus        69 ~~G~Wk~~g~~~~I~~~g~~iG~k~~l~f~~~~~~~~~kT~W~M~EY~l~~~~~~---~~~~~~VlCki~~~~~  139 (155)
                      ++|+||++|+++.|..+|.+||+||+|+||.++++++.+|+|+||||+|.+....   ...++|||||||++..
T Consensus        94 ~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~  167 (171)
T 1ut7_A           94 GSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQS  167 (171)
T ss_dssp             TTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC-
T ss_pred             CCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCC
Confidence            9999999999999999889999999999999999999999999999999987532   2467899999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	2e-22

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 85.4 bits (211), Expect = 2e-22
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 23/152 (15%)

Query: 9   PIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPD------GVWYLVC 61
           P    F  TDE L    L R   G      +I +++ Y   P  LP+        WY   
Sbjct: 18  PPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFS 77

Query: 62  SKE---------NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVM 112
            ++         N  A  G W+A G    I +    +G +  L F+ G+ P   KT+W+M
Sbjct: 78  PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIM 137

Query: 113 QEFRITQK-RLYGDKKEEVFCLPCILMHCYVY 143
            E+R+ +  R  G  K + + L      C +Y
Sbjct: 138 HEYRLIEPSRRNGSTKLDDWVL------CRIY 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-51  Score=315.79  Aligned_cols=132  Identities=28%  Similarity=0.528  Sum_probs=120.1

Q ss_pred             CCCCCCeeEcCChHHHHH-HHHHHHcCCCCCCCceeecCCCCCCCCCCC------CCceEEEEeec---------ccccC
Q 031672            6 ASTPIDVDFASTDENLFG-SLERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCSKE---------NTSAQ   69 (155)
Q Consensus         6 ~~lp~G~RF~PtDeELv~-YL~~ki~g~plp~~~I~~~Dvy~~~Pw~L~------~~~wyFF~~~~---------~r~~~   69 (155)
                      ..|||||||+|||||||. ||++|+.|.|++.++|+++|||++|||+|+      +++||||+++.         +|+++
T Consensus        15 l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~R~~g   94 (166)
T d1ut7a_          15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAG   94 (166)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEET
T ss_pred             ccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCccccccC
Confidence            389999999999999999 999999999999999999999999999999      67899999986         67999


Q ss_pred             CCeEEecCcceeEeeCCeEEEEEEEEeeeeCcCCCCCCcCeEEEEEEeCCCCCCC---CCCceEEEEeeEE
Q 031672           70 HGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYG---DKKEEVFCLPCIL  137 (155)
Q Consensus        70 ~G~Wk~~g~~~~I~~~g~~iG~k~~l~f~~~~~~~~~kT~W~M~EY~l~~~~~~~---~~~~~VlCki~~~  137 (155)
                      +|+||++|+++.|.++|.+||+|++|+||+++++++.+|+|+||||+|.+....+   ..++|||||||++
T Consensus        95 ~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~K  165 (166)
T d1ut7a_          95 SGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK  165 (166)
T ss_dssp             TEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEEC
T ss_pred             CCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEEec
Confidence            9999999999999999999999999999999999999999999999999875432   4568999999976