Citrus Sinensis ID: 031696

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MERPTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKYV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHccEEEEcccccEEcHHHHHHHHHcccccccHHHHHHHHHHHHHcEEEEEEccccEEEccccccccccccccccccccccccccccccccccHHHHHHHcccccccEEEEEEEcccccccccccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHccEEEEcccccEEcHHHHHHHHHcccccccHHHHHHHHHHHHccEEEEcccccEEEEccccccEEccccccccccccccccEcccccccccHHHHHHHHccccccccEEEEEcccccccccccccccEEEEEEcccc
Coil and Loop (DISEMBL)
MERPTAQLRRLCRFLAEIGALylldnndlclpLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIvgrhgvpwivkipkgrdinitsdpvslqvtpkrhgvmdvepkeESSLVALFYNIqinevrpvfdvylpnrkfkkscpgdpsfllyltckyv
Flexible Loop (DISEMBL)
MERPTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIpkgrdinitsdpvslqvtpkrhgVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPNRkfkkscpgdpsfllyltckyv
Low Complexity Region (SEG)
MERPTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKYV
Disordered region (IsUnstruct)
*******LRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSL******************SLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKY*
Disordered Region (DISOPRED)
******Q*RRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIP************************************LFYNIQINEVRPVFDVYLPNRKF*K*CPGDPSFLLYLTCKYV
Disordered Region (DISEMBL)
MERPTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKYV
Disordered Region (DISPRO)
*ERPTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITS***********HGVM****KEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKYV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERPTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKYV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
224134699	283	predicted protein [Populus trichocarpa]	0.851	0.466	0.554	4e-37
225441894	255	PREDICTED: uncharacterized protein LOC10	0.845	0.513	0.550	1e-34
297739626	281	unnamed protein product [Vitis vinifera]	0.845	0.466	0.550	2e-34
147790314	1843	hypothetical protein VITISV_010199 [Viti	0.845	0.071	0.543	3e-34
356503431	264	PREDICTED: uncharacterized protein LOC10	0.858	0.503	0.521	1e-33
255572755	261	conserved hypothetical protein [Ricinus	0.832	0.494	0.550	2e-32
449449845	267	PREDICTED: uncharacterized protein LOC10	0.864	0.501	0.492	2e-31
356570446	272	PREDICTED: uncharacterized protein LOC10	0.890	0.507	0.496	4e-30
238014748	212	unknown [Zea mays]	0.890	0.650	0.461	3e-27
240255663	254	uncharacterized protein [Arabidopsis tha	0.767	0.468	0.463	5e-27

>gi|224134699|ref|XP_002327468.1| predicted protein [Populus trichocarpa] gi|222836022|gb|EEE74443.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 100/137 (72%), Gaps = 5/137 (3%)

Query: 14  FLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWI 73
           FLAEIGAL ++D+ND CL LK+I++K++ E++GCSWELFEVY+HLKSLGY+VGRHGVPW 
Sbjct: 83  FLAEIGALLVMDDNDECLALKDIHKKMSEERNGCSWELFEVYKHLKSLGYVVGRHGVPWS 142

Query: 74  VKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPN 133
           +K      +   S P S Q T + + V  VE    +  V +  N+Q++E+R  FDVYLPN
Sbjct: 143 MK-----GVENNSKPCSSQGTIQNNRVEGVEENSITCAVQMLSNLQVDELRLNFDVYLPN 197

Query: 134 RKFKKSCPGDPSFLLYL 150
            KF+KS PGDP+FLL L
Sbjct: 198 SKFRKSSPGDPAFLLCL 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441894|ref|XP_002284389.1| PREDICTED: uncharacterized protein LOC100257347 [Vitis vinifera]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/138 (55%), Positives = 96/138 (69%), Gaps = 7/138 (5%)

Query: 14  FLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWI 73
           FLAE+GAL+LLD+ND+ + LK IY+K++  K GC WE FE YRHLKSLGYIVGRHG+PW 
Sbjct: 79  FLAELGALHLLDDNDVPISLKGIYDKVSQGKCGCCWESFEAYRHLKSLGYIVGRHGIPWT 138

Query: 74  VKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPN 133
            K  K       +   S Q TP+ +   D   +EE+S + L  N+ I EV+ +FDVYLPN
Sbjct: 139 SKGAK-------TCLDSHQGTPEGNSRTDEGSEEENSTIELVNNMHITEVKLLFDVYLPN 191

Query: 134 RKFKKSCPGDPSFLLYLT 151
            KF+KS PGDPSF+L LT
Sbjct: 192 SKFRKSSPGDPSFVLCLT 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739626|emb|CBI29808.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/138 (55%), Positives = 96/138 (69%), Gaps = 7/138 (5%)

Query: 14  FLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWI 73
           FLAE+GAL+LLD+ND+ + LK IY+K++  K GC WE FE YRHLKSLGYIVGRHG+PW 
Sbjct: 105 FLAELGALHLLDDNDVPISLKGIYDKVSQGKCGCCWESFEAYRHLKSLGYIVGRHGIPWT 164

Query: 74  VKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPN 133
            K  K       +   S Q TP+ +   D   +EE+S + L  N+ I EV+ +FDVYLPN
Sbjct: 165 SKGAK-------TCLDSHQGTPEGNSRTDEGSEEENSTIELVNNMHITEVKLLFDVYLPN 217

Query: 134 RKFKKSCPGDPSFLLYLT 151
            KF+KS PGDPSF+L LT
Sbjct: 218 SKFRKSSPGDPSFVLCLT 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790314|emb|CAN74373.1| hypothetical protein VITISV_010199 [Vitis vinifera]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 95/138 (68%), Gaps = 7/138 (5%)

Query: 14   FLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWI 73
            FLAE+GAL+LLD+ D+ + LK IY+K++  K GC WE FE YRHLKSLGYIVGRHG+PW 
Sbjct: 1108 FLAELGALHLLDDXDVPISLKGIYDKVSQGKCGCCWESFEAYRHLKSLGYIVGRHGIPW- 1166

Query: 74   VKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPN 133
                KG    + S     Q TP+ +   D   +EE+S + L  N+ I EV+ +FDVYLPN
Sbjct: 1167 --TSKGXKTCLDSH----QGTPEGNSRTDXGSEEENSTIELVNNMHITEVKLLFDVYLPN 1220

Query: 134  RKFKKSCPGDPSFLLYLT 151
             KF+KS PGDPSF+L LT
Sbjct: 1221 SKFRKSSPGDPSFVLCLT 1238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503431|ref|XP_003520512.1| PREDICTED: uncharacterized protein LOC100811412 [Glycine max]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 99/140 (70%), Gaps = 7/140 (5%)

Query: 14  FLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWI 73
           +L E+GAL LLDN    + L E YEK+A+ KSGC WELF+VYRHLKS+GYI+GRHGV W 
Sbjct: 55  YLMELGALDLLDNGGRSISLTETYEKVASGKSGCCWELFDVYRHLKSIGYIIGRHGVAWS 114

Query: 74  VKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSL--VALFYNIQINEVRPVFDVYL 131
           +K      I +  + + L+   +   + D++ K E S+  + LF  +Q+N++RP FDVYL
Sbjct: 115 LK-----SIKVPINLLLLKSQKEIEQLEDIDSKSELSINELWLFGEMQVNDLRPDFDVYL 169

Query: 132 PNRKFKKSCPGDPSFLLYLT 151
           PN +F+KSCPGDPSFLLYL+
Sbjct: 170 PNSRFRKSCPGDPSFLLYLS 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572755|ref|XP_002527310.1| conserved hypothetical protein [Ricinus communis] gi|223533310|gb|EEF35062.1| conserved hypothetical protein [Ricinus communis]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/138 (55%), Positives = 96/138 (69%), Gaps = 9/138 (6%)

Query: 14  FLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWI 73
           FLAE+GAL L+D+   CL LK++Y K+  +KSGC  ELFEVYRHLKSLGYIVGRHGVPW 
Sbjct: 85  FLAELGALVLMDDEGTCLSLKDLYGKMGYQKSGCCSELFEVYRHLKSLGYIVGRHGVPWS 144

Query: 74  VKIPKGRDINITSDPVSLQVTPKRHG-VMDVEPKEESSLVALFYNIQINEVRPVFDVYLP 132
           +   KG      SD      T + +G V+D E KE +S+V    N+Q++E+R  FDVYLP
Sbjct: 145 M---KGVKSTCQSDS-----THENNGVVIDNEVKETASIVQRLRNLQVDELRLDFDVYLP 196

Query: 133 NRKFKKSCPGDPSFLLYL 150
           N KF+KS PG+P+F L L
Sbjct: 197 NSKFRKSSPGEPAFFLCL 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449845|ref|XP_004142675.1| PREDICTED: uncharacterized protein LOC101210680 [Cucumis sativus] gi|449525862|ref|XP_004169935.1| PREDICTED: uncharacterized LOC101210680 [Cucumis sativus]

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/142 (49%), Positives = 99/142 (69%), Gaps = 8/142 (5%)

Query: 14  FLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWI 73
           FL E+GAL+LLD+++  L LK++Y+K+A  +SG  WE FEVYRHLKSLGYIVG+H VPW 
Sbjct: 90  FLIEVGALHLLDHDNSSLSLKDVYKKVAEGRSGRLWEQFEVYRHLKSLGYIVGKHRVPWS 149

Query: 74  VKIPKGRDINITSD-PVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLP 132
           +K       N+ +D  +S   + +  G  DV+  +E S+  L   IQ++EV P+FDV+LP
Sbjct: 150 LK-------NVRNDCDISSPSSTENKGASDVKSDDEQSICRLLNAIQLDEVTPIFDVFLP 202

Query: 133 NRKFKKSCPGDPSFLLYLTCKY 154
           + KF+KS PGDP+F++ LT  Y
Sbjct: 203 HNKFRKSSPGDPNFMVCLTRGY 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570446|ref|XP_003553398.1| PREDICTED: uncharacterized protein LOC100782940 [Glycine max]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/141 (49%), Positives = 93/141 (65%), Gaps = 3/141 (2%)

Query: 14  FLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWI 73
           +L E+GAL+L+DN    + L E+YEK+A+ KSGC WELFEVYRHLKSLGYI+G HGV W 
Sbjct: 87  YLMELGALHLVDNGGRSISLTEMYEKVASGKSGCCWELFEVYRHLKSLGYIIGCHGVAWS 146

Query: 74  VK--IPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLV-ALFYNIQINEVRPVFDVY 130
           +K  I + +  +   D      +      +    +   S+   LF  +QIN++RP FDVY
Sbjct: 147 LKKIIGEHKKSHRQHDFAHSNKSISHFSFLTNAFRALVSICHKLFGKLQINDLRPDFDVY 206

Query: 131 LPNRKFKKSCPGDPSFLLYLT 151
           LPN +F+KS PGDPSFLLYL+
Sbjct: 207 LPNSRFRKSSPGDPSFLLYLS 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238014748|gb|ACR38409.1| unknown [Zea mays]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/143 (46%), Positives = 91/143 (63%), Gaps = 5/143 (3%)

Query: 8   LRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGR 67
           L + CRFLAE+GAL LL++ D  + +++IY K+A    GCSW+ F+ Y+HLKSLGYIVGR
Sbjct: 28  LMKTCRFLAEMGALILLNDKDETIGIEDIYGKLAGGNYGCSWDTFQAYKHLKSLGYIVGR 87

Query: 68  HGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVF 127
            GVPW +K   G   +  +  +++  T +    +D      + +  L   IQI+ + P F
Sbjct: 88  FGVPWTMK--HGGTHHTIAPQINILETDQSLNRVD---GASNDITKLLKEIQIDGICPSF 142

Query: 128 DVYLPNRKFKKSCPGDPSFLLYL 150
           +VYLPN KFKKS PG PSFLL L
Sbjct: 143 EVYLPNSKFKKSSPGCPSFLLCL 165

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255663|ref|NP_191295.4| uncharacterized protein [Arabidopsis thaliana] gi|50198814|gb|AAT70440.1| At3g57360 [Arabidopsis thaliana] gi|51972142|gb|AAU15175.1| At3g57360 [Arabidopsis thaliana] gi|332646125|gb|AEE79646.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/138 (46%), Positives = 89/138 (64%), Gaps = 19/138 (13%)

Query: 14  FLAEIGALYLLDN-NDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPW 72
           +L+EIG L +L N +D+ +PLK++YEKIA EKSGCSWE +EVYR+LK LGYI+GRHGV W
Sbjct: 83  YLSEIGELQILGNEDDIVIPLKDLYEKIAEEKSGCSWENYEVYRYLKGLGYILGRHGVSW 142

Query: 73  IVKI---PKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDV 129
            +K    P G + +  +                  P +  ++  L  ++QI + + VFDV
Sbjct: 143 TLKDAARPNGEEESACAGEC---------------PADNDTVTKLLGDMQICDAKAVFDV 187

Query: 130 YLPNRKFKKSCPGDPSFL 147
           YLPN +FKKS PG+PSF+
Sbjct: 188 YLPNSRFKKSSPGEPSFV 205

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2082553	254	AT3G57360 "AT3G57360" [Arabido	0.767	0.468	0.463	5.7e-27

TAIR|locus:2082553 AT3G57360 "AT3G57360" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 64/138 (46%), Positives = 89/138 (64%)

Query:    14 FLAEIGALYLLDN-NDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPW 72
             +L+EIG L +L N +D+ +PLK++YEKIA EKSGCSWE +EVYR+LK LGYI+GRHGV W
Sbjct:    83 YLSEIGELQILGNEDDIVIPLKDLYEKIAEEKSGCSWENYEVYRYLKGLGYILGRHGVSW 142

Query:    73 IVKI---PKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDV 129
              +K    P G + +  +                  P +  ++  L  ++QI + + VFDV
Sbjct:   143 TLKDAARPNGEEESACAGEC---------------PADNDTVTKLLGDMQICDAKAVFDV 187

Query:   130 YLPNRKFKKSCPGDPSFL 147
             YLPN +FKKS PG+PSF+
Sbjct:   188 YLPNSRFKKSSPGEPSFV 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.142   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      155       155   0.00096  105 3  11 22  0.47    31
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  152 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.79u 0.11s 16.90t   Elapsed:  00:00:01
  Total cpu time:  16.79u 0.11s 16.90t   Elapsed:  00:00:01
  Start:  Mon May 20 23:48:47 2013   End:  Mon May 20 23:48:48 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00440184 hypothetical protein (283 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
KOG4772	364	consensus Predicted tRNA-splicing endonuclease sub	99.93
PRK09297	169	tRNA-splicing endonuclease subunit alpha; Reviewed	99.47
TIGR00324	170	endA tRNA intron endonuclease. The enzyme catalyse	99.45
COG1676	181	SEN2 tRNA splicing endonuclease [Translation, ribo	99.22
PRK09300	330	tRNA splicing endonuclease; Reviewed	99.08
PRK09300	330	tRNA splicing endonuclease; Reviewed	99.06
PF12928	72	tRNA_int_end_N2: tRNA-splicing endonuclease subuni	98.48
PF02778	67	tRNA_int_endo_N: tRNA intron endonuclease, N-termi	97.85
PRK09539	124	tRNA-splicing endonuclease subunit beta; Reviewed	97.36
PF01974	85	tRNA_int_endo: tRNA intron endonuclease, catalytic	97.24
KOG4685	271	consensus tRNA splicing endonuclease SEN2 [Transla	97.05
KOG4133	290	consensus tRNA splicing endonuclease [Translation,	91.06

>KOG4772 consensus Predicted tRNA-splicing endonuclease subunit [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=4.6e-27  Score=202.30  Aligned_cols=143  Identities=30%  Similarity=0.478  Sum_probs=98.8

Q ss_pred             cchhHHHHHHHHhhC-CEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEeeecCCCceeec---CCCc
Q 031696            5 TAQLRRLCRFLAEIG-ALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKI---PKGR   80 (155)
Q Consensus         5 ~~~lpeEaLYL~ErG-~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~R~g~~~~~~~---~~~~   80 (155)
                      +||++||||||+||| ...+++.++.+||++++|+.+..++  -+|++|+||+||||+||||.||+.+-+++.   +.+-
T Consensus       110 lyl~~eEalYL~ErG~l~~cg~e~~I~~sl~dLys~~~s~~--~s~enYlVyahLkrlGfiv~rhn~~~~~~~e~~~~~k  187 (364)
T KOG4772|consen  110 LYLFIEEALYLSERGELQSCGHEDDIVISLKDLYSEIASEK--YSMENYLVYAHLKRLGFIVKRHNVPAAVKTEFFPLKK  187 (364)
T ss_pred             eEEeHHHHHHHHHhhhhhhhcCccchhhHHHHHHHHHhhhh--cchhHHHHHHHHHhcceeeeccCCCcccccccccHHH
Confidence            799999999999999 4457678899999999999988643  459999999999999999999999844432   1000


Q ss_pred             cccccC-------CCccccccccccccccCCCCccchHHHHHhh----------------------c-ccCCceeEEEEe
Q 031696           81 DINITS-------DPVSLQVTPKRHGVMDVEPKEESSLVALFYN----------------------I-QINEVRPVFDVY  130 (155)
Q Consensus        81 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------~-~~~~~~i~F~Vy  130 (155)
                      .|+.-.       .+..++    ..+....-+++..+.+.+|.+                      + ..+++.++|++|
T Consensus       188 iw~~k~a~~~~L~~p~~i~----es~~f~~~~~r~~~~s~LL~d~~~~d~~~v~Dp~yLp~~~~k~~~k~spie~tfs~~  263 (364)
T KOG4772|consen  188 IWTLKDAITWRLLSPSKIQ----ESSCFSEFFYRRDTVSKLLYDMLICDARSVFDPVYLPNSQFKEFQKSSPIEPTFSFV  263 (364)
T ss_pred             HHHHHHHHhccCCCchhhh----hhhhhhhhhhhhhHHHHHHHhhhhcccccccchhcCcchhhhhhcccCCCCCcceee
Confidence            000000       000000    001111111222222223322                      1 347899999999


Q ss_pred             cCCCCCcccCCCCCCEEEEEeee
Q 031696          131 LPNRKFKKSCPGDPSFLLYLTCK  153 (155)
Q Consensus       131 kP~~~FkKssPg~PdF~i~Vv~~  153 (155)
                      +|.++|+||.|+.|||++||.++
T Consensus       264 kpfS~fgks~~s~pdf~v~v~~~  286 (364)
T KOG4772|consen  264 KPFSNFGKSDPSLPDFQVFVYNK  286 (364)
T ss_pred             cccccccCCCCCCCceeEEEEec
Confidence            99999999999999999999875

>PRK09297 tRNA-splicing endonuclease subunit alpha; Reviewed

Probab=99.47  E-value=1.6e-14  Score=114.67  Aligned_cols=72  Identities=26%  Similarity=0.305  Sum_probs=65.1

Q ss_pred             CcchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696            4 PTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus         4 ~~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      +-.|-|+||+||+|+|.|+|.++++.+||++++++.+.. .+..++.+|.||+|||++||+|+   |||++|.+|.
T Consensus        34 ~L~Ls~~Ea~yL~~~g~L~v~~~~~~~~s~~el~~~~~~-~~~~F~~~y~VY~dLr~rG~~vk~G~kfG~df~vY~  108 (169)
T PRK09297         34 PLELSLIEALYLVEKGWLEVVDKDGELLSFEELYELARE-IIEKFDIKYLVYKDLRDRGYIVKSGLKYGSDFRVYE  108 (169)
T ss_pred             cEEEcHHHHHHHHHCCCEEEEcCCCcccCHHHHHHHHHh-ccccHHHHhHHHHHHHHCCCccCCCCcCCeeEEEEC
Confidence            446789999999999999999888888999999999764 56789999999999999999998   9999999994

>TIGR00324 endA tRNA intron endonuclease

Probab=99.45  E-value=3.6e-14  Score=112.95  Aligned_cols=71  Identities=18%  Similarity=0.272  Sum_probs=64.2

Q ss_pred             cchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696            5 TAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus         5 ~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      -.|-|+||+||+++|.|+|.++++.+||++++.+.+.. .+..++.+|.||+|||++||+|+   |||++|.+|.
T Consensus        36 l~LsliEa~yL~~~g~l~v~~~~~~~ls~~el~~~~~~-~~~~f~~~y~VY~dLR~rG~~vk~G~kFG~dF~vY~  109 (170)
T TIGR00324        36 LNLSLIESLYLIDLGKLRLIRSDSEPLSREELSDLARK-VERGFMRKYLVYKDLRDRGYVVKTGFKFGADFRLYE  109 (170)
T ss_pred             cEEeHHHHHHHHhCCcEEEEcCCCCcCCHHHHHHHHHh-ccccHHHhhHHHHHHHHCCCEecCCcccCceEEEEC
Confidence            35779999999999999998878889999999999763 56679999999999999999998   9999999994

The enzyme catalyses the endonucleolytic cleavage of pre tRNA at the 5' and 3' splice sites to release the intron and produces two half tRNA molecules bearing 5' hydroxyl and 2', 3'-cyclic phosphate termini. The genes are homologous in Eucarya and Archea. The two yeast genes have been functionally studied (PubMed:97344075) and are two subunits of a heterotetramer enzyme in yeast the other two subunits of which have no known homologs.

>COG1676 SEN2 tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=1.3e-11  Score=99.57  Aligned_cols=72  Identities=28%  Similarity=0.332  Sum_probs=64.6

Q ss_pred             CcchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696            4 PTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus         4 ~~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      +--|=++||+||.|+|.|.+.+.++.++|++|++.+... ....++.+|.||++||++||||+   |||+.|.+|.
T Consensus        45 ~l~ls~~ea~yl~e~g~l~~~~~~~~~~s~eel~~~~~~-~~~~f~~~y~VY~dLr~rG~vvktG~KfG~~FrvY~  119 (181)
T COG1676          45 PLQLSLIEALYLAERGFLKVESRDGKILSFEELMDLGAE-KEESFDERYLVYRDLRDRGYVVKTGLKFGSDFRVYR  119 (181)
T ss_pred             cceecHHHHHHHhhcceEeeccCCCccccHHHHHHHHhh-cccccceeeeehhhHHhCceEECccceeeeEEEEec
Confidence            344568999999999999998888899999999999664 45679999999999999999998   9999999994

>PRK09300 tRNA splicing endonuclease; Reviewed

Probab=99.08  E-value=8.2e-11  Score=102.40  Aligned_cols=66  Identities=17%  Similarity=0.238  Sum_probs=57.8

Q ss_pred             cchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEeeecCCCceeec
Q 031696            5 TAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKI   76 (155)
Q Consensus         5 ~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~R~g~~~~~~~   76 (155)
                      -.|=|+||+||+|||.|++.+  +  +|++++++.+.. . ..++.+|.||++||++||+|+--|++|.+|.
T Consensus        34 L~LslvEalYL~~~g~l~v~~--~--~~~eel~~~~~~-~-~~f~~~y~VY~dLR~rGy~vk~gg~dF~vY~   99 (330)
T PRK09300         34 LELAPVEAAYLLFRGKIEIVD--G--LGFRDLFARASL-R-PNFELRYLVYKDLRERGYYVQPGDADFRVYP   99 (330)
T ss_pred             eEEcHHHHHHHHHcCCEEEec--C--CCHHHHHHHhhh-c-ccchheehHHHHHHHCCceeccCCccEEEEc
Confidence            357799999999999999972  2  999999999664 3 7899999999999999999997788999984

>PRK09300 tRNA splicing endonuclease; Reviewed

Probab=99.06  E-value=6.9e-11  Score=102.88  Aligned_cols=66  Identities=23%  Similarity=0.254  Sum_probs=59.2

Q ss_pred             cchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696            5 TAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus         5 ~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      -.|=|+||+||+++|.|+|     ..||++++.+.+.. ..+.+..+|.||+|||++||+|+   |||++|.+|.
T Consensus       199 L~LslvEA~yL~~~g~L~v-----~~~~~~el~~~~~~-~~~~F~~~y~VY~dLR~rG~~vk~G~KFG~DF~vY~  267 (330)
T PRK09300        199 LQLSLVEAAYLLERGVLSV-----EILDADEFVERARE-VEGEFDRKLAVYRDLRERGFVPKTGFKFGSDFRVYE  267 (330)
T ss_pred             eeECHHHHHHHHhCCCEEE-----eeCCHHHHHHHHhh-cccchHhhhHHHHHHHHCCCEecCCcccCceEEEEC
Confidence            3577999999999999999     45999999999764 45679999999999999999999   9999999994

>PF12928 tRNA_int_end_N2: tRNA-splicing endonuclease subunit sen54 N-term; InterPro: IPR024336 tRNA-splicing endonucleases (3

Probab=98.48  E-value=7.2e-08  Score=67.01  Aligned_cols=23  Identities=26%  Similarity=0.124  Sum_probs=20.6

Q ss_pred             CcchhHHHHHHHHhhCCEEEecC
Q 031696            4 PTAQLRRLCRFLAEIGALYLLDN   26 (155)
Q Consensus         4 ~~~~lpeEaLYL~ErG~L~v~~~   26 (155)
                      -.+|+|||||||+|||+|+|+.+
T Consensus        49 ~~~L~pEEalyLvErGsL~l~~~   71 (72)
T PF12928_consen   49 KLWLLPEEALYLVERGSLDLWWP   71 (72)
T ss_pred             eEEEeHHHHHHHHhcCcEEEEeC
Confidence            46899999999999999999863

1.27.9 from EC) catalyse the endonucleolytic cleavage of pre tRNA at the 5' and 3' splice sites to release the intron and produces two half tRNA molecules bearing 5' hydroxyl and 2', 3'-cyclic phosphate termini [, ]. The genes encoding these proteins are homologous in eukaryotes and archea. The eukaryotic tRNA-splicing endonucleases are heterotetrameric while the archaeal endonucleases can be split into homodimeric and homotetrameric subgroups. This entry represents the N-terminal domain of Sen54, a non-catalytic subunit of the tRNA-splicing endonuclease complex. Defects in human Sen54 are a cause of pontocerebellar hypoplasia type 4 [].

>PF02778 tRNA_int_endo_N: tRNA intron endonuclease, N-terminal domain; InterPro: IPR006678 This entry represents a 2-layer alpha/beta domain found at the N-terminal in homotetrameric tRNA-intron endonucleases [], and as domains 1 (N-terminal) and 3 in the homodimeric enzymes []

Probab=97.85  E-value=2e-05  Score=54.27  Aligned_cols=33  Identities=18%  Similarity=0.207  Sum_probs=28.0

Q ss_pred             CcchhHHHHHHHHhhCCEEEecCCCcccCHHHHH
Q 031696            4 PTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIY   37 (155)
Q Consensus         4 ~~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y   37 (155)
                      +-.|=|+||+||+++|.|+|. .+|+.||+++++
T Consensus        35 ~L~LslvEa~YL~~~g~l~v~-~~g~~ls~~el~   67 (67)
T PF02778_consen   35 RLQLSLVEALYLLEKGKLEVY-EDGKKLSFEELW   67 (67)
T ss_dssp             CEEEEHHHHHHHHHTTSEEEE-TTSCEE-HHHHH
T ss_pred             cEEEeHHHHHHHHhCCcEEEe-eCCcCCCHHHhC
Confidence            345669999999999999998 789999999985

tRNA-intron endonucleases (3.1.27.9 from EC) remove tRNA introns by cleaving pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-hydroxyl termini []. These enzymes recognise a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp []. Although homotetrameric enzymes contain four active sites, only two participate in the cleavage, and should therefore, be considered as a dimer of dimers.; GO: 0000213 tRNA-intron endonuclease activity, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1A79_D 2CV8_A 3P1Z_B 3AJV_B 3IEY_A 2ZYZ_D 2GJW_D 1R0V_A 3P1Y_C 1R11_B ....

>PRK09539 tRNA-splicing endonuclease subunit beta; Reviewed

Probab=97.36  E-value=5.6e-05  Score=58.10  Aligned_cols=31  Identities=19%  Similarity=0.172  Sum_probs=25.2

Q ss_pred             CCCcceeeeeeccccCccEEee---ecCCCceee
Q 031696           45 SGCSWELFEVYRHLKSLGYIVG---RHGVPWIVK   75 (155)
Q Consensus        45 ~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~   75 (155)
                      +..+|++|.||+|||++||+|+   +||+.+..+
T Consensus        31 ~~~~~~kylVYkDLR~RGyvVk~G~kfg~~~~~~   64 (124)
T PRK09539         31 YLVNWDKVDVFVDLKQRGRKTIDGIDEISLIIKD   64 (124)
T ss_pred             hhcccceEEEehhHHhCCCeeccCCceeEEEEec
Confidence            4468999999999999999998   666655444

>PF01974 tRNA_int_endo: tRNA intron endonuclease, catalytic C-terminal domain; InterPro: IPR006677 This entry represents a 3-layer alpha/beta/alpha domain found as the catalytic domain at the C-terminal in homotetrameric tRNA-intron endonucleases [], and as domains 2 and 4 (C-terminal) in the homodimeric enzymes []

Probab=97.24  E-value=3.5e-05  Score=54.34  Aligned_cols=29  Identities=38%  Similarity=0.818  Sum_probs=25.6

Q ss_pred             cceeeeeeccccCccEEee---ecCCCceeec
Q 031696           48 SWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus        48 ~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      |+.+|.||+|||++||+|+   +||++|.+|.
T Consensus         1 F~~~y~vY~dLr~rG~~v~~G~kfG~df~vY~   32 (85)
T PF01974_consen    1 FWRKYAVYRDLRSRGYVVKPGIKFGCDFLVYP   32 (85)
T ss_dssp             HHHHHHHHHHHHHTT-EEEEEGGGTSSEEEET
T ss_pred             CchhhHHHHHHHHCCCEECccCcCCceEEEEe
Confidence            4678999999999999998   9999999993

tRNA-intron endonucleases (3.1.27.9 from EC) remove tRNA introns by cleaving pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-hydroxyl termini []. These enzymes recognise a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp []. Although homotetrameric enzymes contain four active sites, only two participate in the cleavage, and should therefore, be considered as a dimer of dimers.; GO: 0000213 tRNA-intron endonuclease activity, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 3IEY_B 3IF0_X 2CV8_A 3P1Z_B 3AJV_B 2GJW_D 1R0V_A 3P1Y_C 1R11_B 1RLV_A ....

>KOG4685 consensus tRNA splicing endonuclease SEN2 [Translation, ribosomal structure and biogenesis]

Probab=97.05  E-value=0.00033  Score=59.73  Aligned_cols=69  Identities=19%  Similarity=0.298  Sum_probs=59.1

Q ss_pred             chhHHHHHHHHh-hCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696            6 AQLRRLCRFLAE-IGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus         6 ~~lpeEaLYL~E-rG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      -|-||||.||.- -+.|.|.-+ ..+++-.+++..|.. ....+-..|.+|.|||..|+||+   +||+++-+|.
T Consensus       114 qLs~eEAffL~y~lkci~I~~~-k~l~~~v~~w~am~~-~~~~F~~~y~~y~hlrskGWvvrsGlkyG~DfllYr  186 (271)
T KOG4685|consen  114 QLSPEEAFFLSYALKCIKISLN-KCLLNEVDLWTAMRS-LQPNFGKLYKAYHHLRSKGWVVRSGLKYGVDFLLYR  186 (271)
T ss_pred             hcCHHHHHHHHhhhceeEEehh-hccccHHHHHHHHhh-cchhhHHHHHHHHHHHHcCcEecccccccceEEEEe
Confidence            356999999974 588888754 678999999999765 56779999999999999999999   8999999995

>KOG4133 consensus tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]

Probab=91.06  E-value=0.041  Score=47.31  Aligned_cols=28  Identities=21%  Similarity=0.410  Sum_probs=26.2

Q ss_pred             ceeeeeeccccCccEEee---ecCCCceeec
Q 031696           49 WELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus        49 ~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      ..+|.+|++|.++||.+.   |||.+|.+|+
T Consensus       194 ~lrY~iyKdLwdrGfyLs~ggrFGgdFlvYP  224 (290)
T KOG4133|consen  194 ELRYSIYKDLWDRGFYLSPGGRFGGDFLVYP  224 (290)
T ss_pred             hhHHHHHHHHHHcCceeCcccccCceeEecC
Confidence            578999999999999997   9999999994

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
3iey_A	154	TRNA-splicing endonuclease; protein heterodimer, e	99.57
2zyz_B	183	TRNA-splicing endonuclease; crenarchaea, heterotet	99.51
2cv8_A	180	TRNA-splicing endonuclease; tRNA-intron endonuclea	99.48
1a79_A	171	TRNA endonuclease; 2.28A {Methanocaldococcus janna	99.45
3ajv_B	186	TRNA-splicing endonuclease; ENDA, archaea crenarch	99.41
3iey_B	153	NEQ261; protein heterodimer, endonuclease, hydrola	99.03
2ohc_A	289	TRNA-splicing endonuclease; intron, hydrolase; 2.5	99.03
4fz2_A	395	TRNA intron endonuclease; tRNA splicing endonuclea	98.92
1r0v_A	305	ENDA, tRNA-intron endonuclease, intron endonucleas	98.92
3ajv_A	190	Putative uncharacterized protein; ENDA, archaea cr	98.92
4fz2_A	395	TRNA intron endonuclease; tRNA splicing endonuclea	98.37
1r0v_A	305	ENDA, tRNA-intron endonuclease, intron endonucleas	98.19
2ohc_A	289	TRNA-splicing endonuclease; intron, hydrolase; 2.5	97.75
2zyz_A	116	Putative uncharacterized protein PAE0789; crenarch	93.04

>3iey_A TRNA-splicing endonuclease; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans}

Probab=99.57  E-value=1.5e-16  Score=123.76  Aligned_cols=69  Identities=20%  Similarity=0.291  Sum_probs=59.5

Q ss_pred             chhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696            6 AQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus         6 ~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      -|.||||+||+|+|+|+|.+ +|.+||++++++.+.+ .+..++.+|.||+|||++||+|+   |||++|.+|.
T Consensus        16 ~Ls~~EA~YL~~~G~L~v~~-~~~~ls~~el~~~~~~-~~~~f~~~y~vY~dLr~rG~~vk~G~KFG~dF~vY~   87 (154)
T 3iey_A           16 ELPLIEAYYLLDKGELEVYE-DDKKLSKEEFLKKCLT-YDERFLIRYKAYKELRDKGYTLGTALKFGADFRVYD   87 (154)
T ss_dssp             CEEHHHHHHHHHHTSCCCCS-CCC----HHHHHHHHH-HCTTHHHHHHHHHHHHHTTCEEEEEGGGTEEEEEEC
T ss_pred             EEcHHHHHHHHHCCCEEEEE-CCCcCCHHHHHHHHHh-cCccHHHHHHHHHHHHHCCcEECCCCccCceEEEEC
Confidence            47899999999999999975 6789999999999875 46789999999999999999999   9999999994

>2zyz_B TRNA-splicing endonuclease; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}

Probab=99.51  E-value=2.9e-15  Score=118.62  Aligned_cols=73  Identities=21%  Similarity=0.293  Sum_probs=66.6

Q ss_pred             CCcchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696            3 RPTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus         3 ~~~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      .|-.|.||||+||+|+|.|+|.+++|.+||++++++.+.. .++.++.+|.||+|||++||+|+   |||++|.+|.
T Consensus        46 ~~L~Ls~eEa~yL~~~g~l~v~d~~~~~ls~~el~~~~~~-~~~~f~~~y~vy~~lr~~G~~v~~G~kfG~df~vY~  121 (183)
T 2zyz_B           46 APLILGLYEALYLAEKGRLKVMGEDGREVAPEELAALGRE-RMRNFDEIYKIYKYFRDLGYVVKSGLKFGALFSVYE  121 (183)
T ss_dssp             SCEEEEHHHHHHHHHTTSCEEECTTSCEECHHHHHHHHHH-HSTTHHHHHHHHHHHHHTTCEEEECGGGTSSEEEES
T ss_pred             ceEEeeHHHHHHHHHCCCEEEECCCCCcCCHHHHHHHHhh-hcccHHHHHHHHHHHHHCCeEeccccccCceEEEEc
Confidence            3567899999999999999999888899999999999764 56789999999999999999999   9999999994

>2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural genomics, NPPSFA; 2.80A {Sulfolobus tokodaii}

Probab=99.48  E-value=7.6e-15  Score=115.99  Aligned_cols=72  Identities=21%  Similarity=0.279  Sum_probs=65.1

Q ss_pred             CCcchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696            3 RPTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus         3 ~~~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      .|-.|.||||+||+|+|.|+|.+ +|.+||++++++.+.. .++.++.+|.||+|||++||+|+   |||++|.+|.
T Consensus        44 ~~L~Ls~eEA~yL~~~g~l~v~d-~~~~ls~~el~~~~~~-~~~~f~~~y~VY~~Lr~~G~~v~~G~kfG~df~vY~  118 (180)
T 2cv8_A           44 SELILSLIEGVYLVKKGKLEIVS-NGERLDFERLYQIGVT-QIPRFRILYSVYEDLREKGYVVRSGIKYGADFAVYT  118 (180)
T ss_dssp             CCEEEEHHHHHHHHHTTSCEEEE-TTEEECHHHHHHHHHH-HSTTHHHHHHHHHHHHHTTCEEEECGGGTSSEEEEC
T ss_pred             ceEEEeHHHHHHHHHCCCEEEee-CCCCCCHHHHHHHHhh-hcccHHHHhHHHHHHHhCCeEeccccccCceEEEEc
Confidence            35578999999999999999985 6789999999999775 46789999999999999999999   9999999994

>1a79_A TRNA endonuclease; 2.28A {Methanocaldococcus jannaschii} SCOP: c.52.2.1 d.75.1.1

Probab=99.45  E-value=1.9e-14  Score=112.90  Aligned_cols=71  Identities=23%  Similarity=0.286  Sum_probs=63.2

Q ss_pred             CcchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceee
Q 031696            4 PTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVK   75 (155)
Q Consensus         4 ~~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~   75 (155)
                      |-.|-|+||+||+++|.|+|.++++.+||++++++.+.. .++.++.+|.||+|||++||+|+   |||++|.+|
T Consensus        34 ~L~Ls~~Ea~yL~~~g~l~v~~~~~~~l~~~el~~~~~~-~~~~f~~~y~VY~dLr~rG~~v~~G~kfG~df~vY  107 (171)
T 1a79_A           34 FLSLSLVEALYLINLGWLEVKYKDNKPLSFEELYEYARN-VEERLCLKYLVYKDLRTRGYIVKTGLKYGADFRLY  107 (171)
T ss_dssp             CEEEEHHHHHHHHHHTCEEEECSSSSCCCHHHHHHHHHH-HCTTHHHHHHHHHHHHHTTCEEEECGGGTSSEEEE
T ss_pred             eEEEeHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHh-ccccHHHHhHHHHHHHHCCeEecccccCCceEEEE
Confidence            456889999999999999998765556999999999764 45679999999999999999999   999999999

>3ajv_B TRNA-splicing endonuclease; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_B

Probab=99.41  E-value=3.8e-14  Score=112.75  Aligned_cols=71  Identities=20%  Similarity=0.311  Sum_probs=64.3

Q ss_pred             CcchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696            4 PTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus         4 ~~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      |-.|-||||+||+++|.|+|.+++|.+||.+++++. . ..+..++.+|.||+|||++||+|+   |||++|.+|.
T Consensus        53 ~L~Ls~~Ea~yL~~~g~l~v~~~~~~~ls~~el~~~-~-~~~~~f~~~y~VY~dLr~rG~~v~~G~kfG~dflvY~  126 (186)
T 3ajv_B           53 PLRLSLIESLYLAEKGVLEVAKPDGSSVGVEDLRTA-V-RGNPRFSMLYNIYRDLRERGFVVRSGLKFGSDFAVYR  126 (186)
T ss_dssp             CEEEEHHHHHHHHHTTSEEEECTTSCEECHHHHHHH-H-HTSHHHHHHHHHHHHHHHTTCEEEECGGGTSSEEEES
T ss_pred             eEEEeHHHHHHHHHCCCEEEECCCCCcCCHHHHHHH-h-hccchHHHHhhHHHHHHhCceEeccccccCceEEEEC
Confidence            456889999999999999999877899999999998 3 346679999999999999999999   9999999994

>3iey_B NEQ261; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans} PDB: 3if0_X

Probab=99.03  E-value=6.9e-12  Score=97.35  Aligned_cols=67  Identities=19%  Similarity=0.124  Sum_probs=59.7

Q ss_pred             chhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEeeecCCCceeec
Q 031696            6 AQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKI   76 (155)
Q Consensus         6 ~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~R~g~~~~~~~   76 (155)
                      .|-|+||+||+ +|.|+|.  +|.+||++++.+.+.. .+..++.+|.||+|||++||+|+--|++|.+|.
T Consensus        22 ~Ls~~EA~yL~-~g~l~v~--~~~~l~~~~l~~~~~~-~~~~F~~~y~VY~dLR~rG~~vk~GG~DFlvY~   88 (153)
T 3iey_B           22 KISEPELLFVL-RNKPQIK--DRLKLDEKTIIKEGVK-KYKNFWEIYYTVKDLILRGYRVRFDGFFIELYE   88 (153)
T ss_dssp             ECCHHHHHHHH-HHCTHHH--HHHTCCHHHHHHHHHH-HCTTHHHHHHHHHHHHHTTCEEEECSSSEEEEC
T ss_pred             EECHHHHHHHh-cCCEEec--cCCcCCHHHHHHHHHh-cCcchhhhhHHHHHHHHCCCEEeeCCCeEEEEc
Confidence            46799999999 9999983  5788999999999764 467899999999999999999997799999994

>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum} PDB: 2ohe_A

Probab=99.03  E-value=4.2e-11  Score=101.43  Aligned_cols=59  Identities=15%  Similarity=0.242  Sum_probs=53.7

Q ss_pred             chhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEeeecCCCceeec
Q 031696            6 AQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKI   76 (155)
Q Consensus         6 ~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~R~g~~~~~~~   76 (155)
                      .|.|+||+||++||.|++.    .+||++++++.+       ++.+|.||++||++||.|..-|.+| +++
T Consensus        37 ~L~p~Ea~YLl~rg~l~i~----~~~~~~~~~~~~-------~~~~y~VY~DLr~rG~~v~~~g~dF-vyp   95 (289)
T 2ohc_A           37 ILDPYECLYLYFKGRISFQ----NSDSFRDLFDTV-------TFDRYVAYEILKNKGYRVKEDSGLI-YFR   95 (289)
T ss_dssp             ECCHHHHHHHHHTTCEEES----STTHHHHHHHHS-------CHHHHHHHHHHHTTTCEEEEETTEE-EEE
T ss_pred             EEcHHHHHHHHhcCCEEEe----cCCCHHHHHHhh-------hhhhEeehhhHHhCCceEeeCCccE-Eee
Confidence            5889999999999999995    368999999873       8999999999999999999999999 884

>4fz2_A TRNA intron endonuclease; tRNA splicing endonuclease, hydrolase; 2.25A {Candidatus micrarchaeum acidiphilum}

Probab=98.92  E-value=2.3e-10  Score=100.48  Aligned_cols=65  Identities=17%  Similarity=0.353  Sum_probs=57.8

Q ss_pred             chhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696            6 AQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus         6 ~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      -|=|+||+||+|+|.|+|.+     +|.+++.+.+.. ....++.+|.||+|||++||||+   |||++|.+|.
T Consensus       170 qLSlvEA~YL~~~G~L~V~~-----~s~~el~~~~~~-~~~~F~~kY~VY~dLR~rG~vvksG~KFG~dFrvY~  237 (395)
T 4fz2_A          170 KLDIYETLFLIDMGVISIKN-----FTRAQIVNIASA-RRTDIMKLYDVYKDWRTKGYVVKTGFKFGTNFRIYF  237 (395)
T ss_dssp             EECHHHHHHHHHTTCEEESS-----CCHHHHHHHHHH-HCTTHHHHHHHHHHHHTTTCEEEEEGGGTEEEEEEC
T ss_pred             eecHHHHHHHHhCCCEEeec-----CCHHHHHHHHhh-cchhhhhhhHHHHHHHHCCCEeCcCcccCceEEEee
Confidence            35589999999999999942     889999999764 56789999999999999999999   9999999993

>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A

Probab=98.92  E-value=1.7e-10  Score=98.17  Aligned_cols=65  Identities=26%  Similarity=0.379  Sum_probs=56.8

Q ss_pred             chhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696            6 AQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus         6 ~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      .|-|+||+||+++|.|+|.+ .|.    +++.+.+.. .++.++.+|.||+|||++||+|+   |||++|.+|.
T Consensus       180 ~Lsl~EA~yL~~~g~L~v~~-~~~----~el~~~~~~-~~~~f~~~y~VY~dLR~rG~vvk~G~KFG~DFlvY~  247 (305)
T 1r0v_A          180 TLSLIESLYLLDLGKLNLLN-ADR----EELVKRARE-VERNFDRRYEVYRNLKERGFVVKTGFKFGSEFRVYR  247 (305)
T ss_dssp             EECHHHHHHHHHHTCEEETT-CCH----HHHHHHHHH-HSTTHHHHHHHHHHHHHTTCEEEECGGGTSSEEEES
T ss_pred             EEcHHHHHHHHhcCcEEEec-CCH----HHHHHHHhh-cCcchhhhhhHHHHHHHCCCEeccCcccCcEEEEEC
Confidence            46799999999999999964 333    899998664 46789999999999999999998   9999999994

>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_A

Probab=98.92  E-value=2.1e-10  Score=92.21  Aligned_cols=63  Identities=21%  Similarity=0.041  Sum_probs=52.9

Q ss_pred             hhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee-ecCCCceee
Q 031696            7 QLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG-RHGVPWIVK   75 (155)
Q Consensus         7 ~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~-R~g~~~~~~   75 (155)
                      |-|+||+||+++|.|++    +..++++++++.+..  .++++.+|.||+|||++||+|+ -++.++.+|
T Consensus        67 Ls~vEAlYL~~~G~L~v----~~~~~~~eL~~~~~~--~~~f~~kY~VYkDLR~RGy~Vk~G~KfdflVY  130 (190)
T 3ajv_A           67 LEPLEAAYQASRGMLCM----GETRGWAAAVEVIAG--LGLSLDTALVYFDLRRKGRKPLVGVRRGTLVY  130 (190)
T ss_dssp             ECHHHHHHHHHHTCEEE----TTBCHHHHHHHHHHH--TTCCHHHHHHHHHHHHTTCCCEECSSTTEEEE
T ss_pred             ECHHHHHHHHhcCcEee----cCCCCHHHHHHHHhh--CCCcceEEEeHHHHHhCCCEEeecCCCCeEEE
Confidence            77999999999999987    246899999998653  5689999999999999999998 233357777

>4fz2_A TRNA intron endonuclease; tRNA splicing endonuclease, hydrolase; 2.25A {Candidatus micrarchaeum acidiphilum}

Probab=98.37  E-value=8.3e-08  Score=84.31  Aligned_cols=63  Identities=11%  Similarity=0.142  Sum_probs=54.6

Q ss_pred             chhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEeeecCC
Q 031696            6 AQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGV   70 (155)
Q Consensus         6 ~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~R~g~   70 (155)
                      .|=|.||+||+++|.+.+.+.+|..+|++++.+.+..  ...++.+|.||++||++||+|+.-|.
T Consensus        39 ~LS~~EAaYLl~~~krl~vd~~gk~ls~eelle~~~~--~r~f~~kylVYkDLReRG~~Vk~~g~  101 (395)
T 4fz2_A           39 MLEVEEGLYLVDVRKAACTDENSKPVSFNDIAGVFIK--RKKLMARYFTFKDWRDRGLIIKSPGL  101 (395)
T ss_dssp             EECHHHHHHHHHHSCCEEECTTSCBCCHHHHHHHTTT--STTHHHHHHHHHHHHHTTCCEESCCS
T ss_pred             EEEehhhhHHHHhCCeeeeccCCCcCCHHHHHHHHHh--chhHHHHHHHHHHHHhcCcccccccc
Confidence            4679999999999998888889999999999998653  35799999999999999999985433

>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A

Probab=98.19  E-value=6.2e-08  Score=82.44  Aligned_cols=61  Identities=13%  Similarity=0.121  Sum_probs=24.0

Q ss_pred             chhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEeeecCCCceee
Q 031696            6 AQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVK   75 (155)
Q Consensus         6 ~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~R~g~~~~~~   75 (155)
                      .|=|+||+||+++|. ++.  ++  |  +++.+.+. .+...++.+|.||+|||++||+|+-- .+|.++
T Consensus        29 ~L~~~Ea~YL~~~~~-~i~--~~--~--~~l~~~~~-~~~~~~~~~y~VY~DLR~RGy~v~~g-~df~vy   89 (305)
T 1r0v_A           29 YLHPLEVVYLQIKGI-ESF--GE--L--EDVLSWAE-SRMEDFSTYYFVYEDLRDRGNKVKIQ-GEFLLT   89 (305)
T ss_dssp             -----------------------------------------CHHHHHHHHHHHHHTTCCCEEE-TTEEES
T ss_pred             EEeHHHHHHHHHcCC-chH--hh--H--HHHHHHHH-hcccchhhheehHHHHHhCCcEeeeC-CcEEEe
Confidence            466999999999999 885  33  3  89998864 45678999999999999999999744 567665

>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum} PDB: 2ohe_A

Probab=97.75  E-value=4.1e-06  Score=70.87  Aligned_cols=25  Identities=32%  Similarity=0.393  Sum_probs=24.1

Q ss_pred             eeeeccccCccEEee---ecCCCceeec
Q 031696           52 FEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus        52 Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      |.||+|||++||+|+   |||++|.+|.
T Consensus       203 y~VY~dLR~rG~vvk~G~KFG~DFlvY~  230 (289)
T 2ohc_A          203 DMVYSDLVGRGCIVKTGFKYGANFRVYL  230 (289)
T ss_dssp             HHHHHHHHHTTCEEEECGGGTSSEEEES
T ss_pred             HHHHHHHHHCCCEEcccccCCceEEEEC
Confidence            999999999999999   9999999994

>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}

Probab=93.04  E-value=0.01  Score=43.94  Aligned_cols=21  Identities=24%  Similarity=0.284  Sum_probs=18.6

Q ss_pred             CcceeeeeeccccCccEEeee
Q 031696           47 CSWELFEVYRHLKSLGYIVGR   67 (155)
Q Consensus        47 ~~~~~Y~VY~~Lkr~GYIV~R   67 (155)
                      ....+|+||+|||++||+|..
T Consensus        21 ~~~l~y~VYkDLR~RG~~vk~   41 (116)
T 2zyz_A           21 MDVLQEQVFKDLKSRGFKIIE   41 (116)
T ss_dssp             CCHHHHHHHHHHHTTTCEEEE
T ss_pred             ccceeeHHHHHHHHCCCcccE
Confidence            456789999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1a79a2	74	Tetrameric tRNA splicing endonuclease, N-terminal	98.16
d1r0va2	91	Dimeric tRNA splicing endonuclease, domains 2 and	97.4
d1a79a1	97	Tetrameric tRNA splicing endonuclease, C-terminal	97.1

>d1a79a2 d.75.1.1 (A:9-82) Tetrameric tRNA splicing endonuclease, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: MutS N-terminal domain-like
superfamily: tRNA-intron endonuclease N-terminal domain-like
family: tRNA-intron endonuclease N-terminal domain-like
domain: Tetrameric tRNA splicing endonuclease, N-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.16  E-value=8.8e-07  Score=59.78  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=32.8

Q ss_pred             cchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHh
Q 031696            5 TAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIA   41 (155)
Q Consensus         5 ~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~   41 (155)
                      -.|=|.||+||+++|.|+|.+.+|+.||++++++++.
T Consensus        35 l~Ls~~EalYLl~~gkl~v~~~~gk~lsfe~l~~~a~   71 (74)
T d1a79a2          35 LSLSLVEALYLINLGWLEVKYKDNKPLSFEELYEYAR   71 (74)
T ss_dssp             EEEEHHHHHHHHHHTCEEEECSSSSCCCHHHHHHHHH
T ss_pred             EEEeHHHHHHHHhcCcEEEecCCCCCCCHHHHHHHHh
Confidence            3466999999999999999887899999999999853

>d1r0va2 c.52.2.1 (A:215-305) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: tRNA-intron endonuclease catalytic domain-like
family: tRNA-intron endonuclease catalytic domain-like
domain: Dimeric tRNA splicing endonuclease, domains 2 and 4
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.40  E-value=5.3e-06  Score=57.38  Aligned_cols=29  Identities=34%  Similarity=0.531  Sum_probs=27.0

Q ss_pred             cceeeeeeccccCccEEee---ecCCCceeec
Q 031696           48 SWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus        48 ~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      +..+|.||++||++||+|+   |||++|.+|.
T Consensus         2 F~~~y~vy~~lr~~G~vv~~G~KfG~df~vY~   33 (91)
T d1r0va2           2 FDRRYEVYRNLKERGFVVKTGFKFGSEFRVYR   33 (91)
T ss_dssp             HHHHHHHHHHHHHTTCEEEECGGGTSSEEEES
T ss_pred             hHHHhHHHHHHHHCCCEECCCcccCccEEEEc
Confidence            5678999999999999999   9999999994

>d1a79a1 c.52.2.1 (A:83-179) Tetrameric tRNA splicing endonuclease, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: tRNA-intron endonuclease catalytic domain-like
family: tRNA-intron endonuclease catalytic domain-like
domain: Tetrameric tRNA splicing endonuclease, C-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.10  E-value=1.9e-05  Score=54.72  Aligned_cols=30  Identities=27%  Similarity=0.421  Sum_probs=27.2

Q ss_pred             CcceeeeeeccccCccEEee---ecCCCceeec
Q 031696           47 CSWELFEVYRHLKSLGYIVG---RHGVPWIVKI   76 (155)
Q Consensus        47 ~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~   76 (155)
                      .+..+|.||++||++||+|+   +||++|.+|.
T Consensus         2 ~~~~ky~Vy~dLr~rG~~v~~G~kfG~df~vY~   34 (97)
T d1a79a1           2 RLCLKYLVYKDLRTRGYIVKTGLKYGADFRLYE   34 (97)
T ss_dssp             THHHHHHHHHHHHHTTCEEEECGGGTSSEEEEC
T ss_pred             chhhhhHHHHHHHHCCCEEeecccCCeeEEEEe
Confidence            35678999999999999998   9999999994