Citrus Sinensis ID: 031700

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN
Secondary Structure (PSIPRED)
ccccccEEEEEEEEcccHHHHHHHHHccccccccccccccEEEEEEcccccccccEEEEEEEcccccEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEEEEEccccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEEccHHHHHHHHHcccccccccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEEcccccEEEEEEEcccHHHHccEEEEEEEEEEcccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MASAGGKLEVELEVKSSADKFwgsirdsttlfpkafshdyksiqvlegdgkapgsvrlityadgspivkvstekienvdeankvvtyKVIDGDLLKYYKAFKGIvsvnpkgegsLVKWACEFekasddvpdpsvikDFALKNFQEVDDYILKAN
Flexible Loop (DISEMBL)
masaggklevELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKvstekienvdeankvvtykviDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEkasddvpdpsVIKDFalknfqevDDYILKAN
Low Complexity Region (SEG)
MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN
Disordered region (IsUnstruct)
*******************KFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL***
Disordered Region (DISOPRED)
*****GK**VELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA*
Disordered Region (DISEMBL)
********EVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN
Disordered Region (DISPRO)
****GGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
Q93VR4	155	MLP-like protein 423 OS=A	yes	no	0.954	0.948	0.605	2e-49
Q9SSK7	316	MLP-like protein 34 OS=Ar	no	no	0.935	0.455	0.382	9e-21
Q9SSK9	335	MLP-like protein 28 OS=Ar	no	no	0.961	0.441	0.366	1e-19
Q941R6	171	MLP-like protein 31 OS=Ar	no	no	0.961	0.865	0.372	2e-19
Q9SSK5	158	MLP-like protein 43 OS=Ar	no	no	0.961	0.936	0.359	1e-17
Q9C7I7	152	MLP-like protein 165 OS=A	no	no	0.915	0.927	0.369	1e-15
P85524	150	Kirola OS=Actinidia delic	N/A	no	0.941	0.966	0.317	1e-15
Q06394	159	Major latex protein 146 O	N/A	no	0.798	0.773	0.338	7e-14
P19825	159	Major latex protein 15 OS	N/A	no	0.941	0.911	0.309	4e-13
Q9ZVF2	151	MLP-like protein 329 OS=A	no	no	0.967	0.986	0.303	3e-12

>sp|Q93VR4|ML423_ARATH MLP-like protein 423 OS=Arabidopsis thaliana GN=MLP423 PE=1 SV=1

 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 118/147 (80%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
           G L VE+EVKS A+KFW ++ D   LFPKAF +DYK+IQVL GDG APGS+RLITY +GS
Sbjct: 5   GVLHVEVEVKSPAEKFWVALGDGINLFPKAFPNDYKTIQVLAGDGNAPGSIRLITYGEGS 64

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKA 125
           P+VK+S E+IE VD  NK ++Y +I G++L+YYK FKG ++V PK  GSL+KW+ EFEK 
Sbjct: 65  PLVKISAERIEAVDLENKSMSYSIIGGEMLEYYKTFKGTITVIPKDGGSLLKWSGEFEKT 124

Query: 126 SDDVPDPSVIKDFALKNFQEVDDYILK 152
           + ++ DP VIKDFA+KNF+E+D+Y+LK
Sbjct: 125 AHEIDDPHVIKDFAVKNFKEIDEYLLK 151

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSK7|MLP34_ARATH MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 5/149 (3%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DG 64
           GKLE E+E+K+SA +F            KA   + +S  + EGD    GS+    Y  DG
Sbjct: 11  GKLETEVEIKASAGQFHHMFAGKPHHVSKASPGNIQSCDLHEGDWGTVGSIVFWNYVHDG 70

Query: 65  SPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKWACEF 122
               KV+ E+IE V+    ++T++VI+GDL+K YK+F   + V PK  G GS+V W  E+
Sbjct: 71  E--AKVAKERIEAVEPEKNLITFRVIEGDLMKEYKSFLITIQVTPKHGGPGSIVHWHLEY 128

Query: 123 EKASDDVPDPSVIKDFALKNFQEVDDYIL 151
           EK SD+V  P  +  F ++  QE+D+++L
Sbjct: 129 EKISDEVAHPETLLQFCVEVSQEIDEHLL 157

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSK9|MLP28_ARATH MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 5/153 (3%)

Query: 2   ASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY 61
           +S  GKLE ++E+K+SADKF            KA   + +   + EGD    GS+    Y
Sbjct: 20  SSLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNY 79

Query: 62  A-DGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKW 118
             DG    KV+ E+IE V+    ++T++VI+GDL+K YK+F   + V PK  G GS+V W
Sbjct: 80  VHDGE--AKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHW 137

Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151
             E+EK S++V  P  +  F ++  +E+D+++L
Sbjct: 138 HLEYEKISEEVAHPETLLQFCVEVSKEIDEHLL 170

Can bind steroids (in vitro), and may also bind other types of hydrophobic ligands.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941R6|MLP31_ARATH MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP31 PE=1 SV=2

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 5/153 (3%)

Query: 2   ASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY 61
           +S  GKLE ++E+K+SA KF            KA     +  ++ EGD    GS+    Y
Sbjct: 18  SSLCGKLETDIEIKASAGKFHHMFAGRPHHVSKATPGKIQGCELHEGDWGKVGSIVFWNY 77

Query: 62  A-DGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKW 118
             DG    KV+ E+IE V+    ++T++VI+GDLLK YK+F   + V PK  G GS+V W
Sbjct: 78  VHDGE--AKVAKERIEAVEPEKNLITFRVIEGDLLKEYKSFVITIQVTPKRGGPGSVVHW 135

Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151
             E+EK  D V  P    DF ++  +E+D+++L
Sbjct: 136 HVEYEKIDDKVAHPETFLDFCVEVSKEIDEHLL 168

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSK5|MLP43_ARATH MLP-like protein 43 OS=Arabidopsis thaliana GN=MLP43 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 5/153 (3%)

Query: 2   ASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY 61
           +S  GKLE E+E+K+SA KF     +      KA        ++ EGD    GS+ +  Y
Sbjct: 5   SSLVGKLETEVEIKASAKKFHHMFTERPHHVSKATPDKIHGCELHEGDWGKVGSIVIWKY 64

Query: 62  A-DGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK-GE-GSLVKW 118
             DG   + V   KIE VD    ++T+KV++GDL+  YK+F   + V PK GE GS+  W
Sbjct: 65  VHDGK--LTVGKNKIEAVDPEKNLITFKVLEGDLMNEYKSFAFTLQVTPKQGESGSIAHW 122

Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151
             E+EK S++V  P  +  F ++  +E+D+++L
Sbjct: 123 HLEYEKISEEVAHPETLLQFCVEISKEIDEHLL 155

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7I7|ML165_ARATH MLP-like protein 165 OS=Arabidopsis thaliana GN=MLP165 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 90/149 (60%), Gaps = 8/149 (5%)

Query: 7   KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGS 65
           ++EV++++K+ ADKF   IR S  + PKA +H  K   +LEG+    GS+ L     DG 
Sbjct: 5   EIEVDVDIKTRADKFHKFIRRSQHV-PKA-THYIKGCDLLEGEWGKVGSILLWKLVFDGE 62

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAF-KGIVSVNPK--GEGSLVKWACEF 122
           P  +VS + IE +DE   V+  +V++G L K YK+F K +  ++PK  G GS+VKW  ++
Sbjct: 63  P--RVSKDMIEVIDEEKNVIQLRVLEGPLKKEYKSFLKTMKVMSPKHGGPGSVVKWNMKY 120

Query: 123 EKASDDVPDPSVIKDFALKNFQEVDDYIL 151
           E+   +V  P+ +  F ++  +E+D Y+L
Sbjct: 121 ERIDQNVDHPNRLLQFFVEVTKEIDQYLL 149

Arabidopsis thaliana (taxid: 3702)

>sp|P85524|KIRO_ACTDE Kirola OS=Actinidia deliciosa PE=1 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 3/148 (2%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DG 64
           GK+  ++E+ S    F+   R    L  +    + + + +LEG+    GSV    Y  DG
Sbjct: 5   GKMVKQVEILSDGIVFYEIFRYRLYLISEMSPVNIQGVDLLEGNWGTVGSVIFFKYTIDG 64

Query: 65  SPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEK 124
               K + + +E +DE  K VT+K+++GDL++ YK F  IV V+ KGE + V W   +EK
Sbjct: 65  KE--KTAKDIVEAIDEETKSVTFKIVEGDLMELYKTFIIIVQVDTKGEHNSVTWTFHYEK 122

Query: 125 ASDDVPDPSVIKDFALKNFQEVDDYILK 152
             +DV +P+ + +F ++  ++++ Y LK
Sbjct: 123 LKEDVEEPNTLMNFCIEITKDIETYHLK 150

Actinidia deliciosa (taxid: 3627)

>sp|Q06394|ML146_PAPSO Major latex protein 146 OS=Papaver somniferum GN=MLP146 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 7/130 (5%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY-ADG 64
           GKL +E EV  +ADK++   +    L P    H Y S++ +EG G   G V+   Y  +G
Sbjct: 12  GKLVMESEVNCNADKYYKLYKHHEDL-PSVIPHIYTSVKAVEGHGTTSGCVKEWGYILEG 70

Query: 65  SPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKWACEF 122
            P+   S ++    ++  + + + V+ GDL+  YK F   + VNPK  G G +VKW  ++
Sbjct: 71  KPL---SCKEKTTYNDETRTIHHMVVAGDLMNDYKKFDATLVVNPKSNGHGCIVKWTIDY 127

Query: 123 EKASDDVPDP 132
           EK ++D P P
Sbjct: 128 EKMNEDSPVP 137

Not known; MLPs constitute up to 50% of the soluble latex protein.

Papaver somniferum (taxid: 3469)

>sp|P19825|MLP15_PAPSO Major latex protein 15 OS=Papaver somniferum GN=MLP15 PE=2 SV=2

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 7/152 (4%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY-ADG 64
           GKL  E EV  +ADK++   +    L P A  H Y S++ +EG G   G V+   Y  +G
Sbjct: 12  GKLITESEVNCNADKYYQIFKHHEDL-PSAIPHIYTSVKAVEGHGTTSGCVKEWCYILEG 70

Query: 65  SPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKWACEF 122
            P+     EK    DE  + + +  I+G ++  YK F   + V PK  G+GS+V W  ++
Sbjct: 71  KPLT--VKEKTTYNDET-RTINHNGIEGGMMNDYKKFVATLVVKPKANGQGSIVTWIVDY 127

Query: 123 EKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154
           EK ++D P P     F  +N ++++ ++  ++
Sbjct: 128 EKINEDSPVPFDYLAFFQQNIEDLNSHLCASD 159

Not known; MLPs constitute up to 50% of the soluble latex protein.

Papaver somniferum (taxid: 3469)

>sp|Q9ZVF2|ML329_ARATH MLP-like protein 329 OS=Arabidopsis thaliana GN=MLP329 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 85/155 (54%), Gaps = 6/155 (3%)

Query: 1   MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLIT 60
           MA++G  +  E+ +K SADK +   RD   LFP A  H  + + V +G+  +  ++++  
Sbjct: 1   MATSGTYV-TEVPLKGSADKHYKRWRDENHLFPDAIGHHIQGVTVHDGEWDSHEAIKIWN 59

Query: 61  Y-ADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLV-KW 118
           Y  DG P  +V  E+ E +D+ N V+T++ ++G +++  K +  I   + K    +V K 
Sbjct: 60  YTCDGKP--EVFKERKE-IDDENMVITFRGLEGHVMEQLKVYDLIYQFSQKSPDDIVCKI 116

Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153
              +EK +DD P+PS    F      ++D+++LKA
Sbjct: 117 TMIWEKRTDDSPEPSNYMKFLKSVVADMDEHVLKA 151

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
211906510	153	major latex-like protein [Gossypium hirs	0.967	0.973	0.726	5e-58
224108133	152	predicted protein [Populus trichocarpa]	0.980	0.993	0.697	2e-53
388520331	153	unknown [Lotus japonicus]	0.954	0.960	0.680	4e-53
388505202	153	unknown [Lotus japonicus]	0.941	0.947	0.689	7e-53
449434889	155	PREDICTED: MLP-like protein 423-like [Cu	0.961	0.954	0.695	8e-53
255581166	154	Major latex protein, putative [Ricinus c	0.961	0.961	0.675	1e-51
225424742	153	PREDICTED: MLP-like protein 423 [Vitis v	0.974	0.980	0.647	1e-49
147776917	153	hypothetical protein VITISV_008439 [Viti	0.967	0.973	0.651	2e-49
357486019	156	MLP-like protein [Medicago truncatula] g	0.941	0.929	0.6	1e-48
359807353	153	uncharacterized protein LOC100783267 [Gl	0.941	0.947	0.620	2e-48

>gi|211906510|gb|ACJ11748.1| major latex-like protein [Gossypium hirsutum]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/150 (72%), Positives = 131/150 (87%), Gaps = 1/150 (0%)

Query: 1   MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLIT 60
           MAS+G +L V+ E+KS A+K WG+IRDSTT+FP+A SHDYKSIQVLEGDGKAPGSVRLI 
Sbjct: 1   MASSG-QLHVDFELKSPAEKVWGTIRDSTTIFPQALSHDYKSIQVLEGDGKAPGSVRLIN 59

Query: 61  YADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWAC 120
           YA+GSPIVKVS E+IE+VDEA K   Y +IDGDLLKYYK F G + V PKGE SLVKW+C
Sbjct: 60  YAEGSPIVKVSKERIESVDEAEKKYVYSIIDGDLLKYYKTFIGKIIVVPKGESSLVKWSC 119

Query: 121 EFEKASDDVPDPSVIKDFALKNFQEVDDYI 150
           EFEKAS+++PDPSVIK+FA+KNF+E+DDY+
Sbjct: 120 EFEKASEEIPDPSVIKEFAVKNFKEIDDYL 149

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108133|ref|XP_002314732.1| predicted protein [Populus trichocarpa] gi|222863772|gb|EEF00903.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/152 (69%), Positives = 125/152 (82%), Gaps = 1/152 (0%)

Query: 1   MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLIT 60
           MAS GGKLEV++E+KS+A KFW +IRDSTTLFPKAF   YKSI++LEGDGKA GS RL T
Sbjct: 1   MAS-GGKLEVDVEIKSAAKKFWDNIRDSTTLFPKAFPDQYKSIEILEGDGKAAGSTRLFT 59

Query: 61  YADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWAC 120
           Y +GSP+VKVS E+I+ VDEA K V+Y VI+GDLLKYYK+FK  + V PKG+GSLVKW C
Sbjct: 60  YGEGSPLVKVSKERIDTVDEAKKEVSYSVIEGDLLKYYKSFKATIVVTPKGDGSLVKWMC 119

Query: 121 EFEKASDDVPDPSVIKDFALKNFQEVDDYILK 152
           EF KAS+DV  P VIKDF +KNF EVD+ ILK
Sbjct: 120 EFVKASEDVEVPHVIKDFVVKNFLEVDELILK 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520331|gb|AFK48227.1| unknown [Lotus japonicus]

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 100/147 (68%), Positives = 127/147 (86%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
           GKLEV++++KS+ADK+W ++RDSTT+FPKAF HDYKSI++LEGDGKA GSVR ITYA+GS
Sbjct: 5   GKLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEGDGKAAGSVRHITYAEGS 64

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKA 125
           P+VK STEKI+  D+  K V+Y VIDG+LL+YYK FKG +SV   GEGS VKW+ E+EKA
Sbjct: 65  PLVKSSTEKIDAGDDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGEGSEVKWSAEYEKA 124

Query: 126 SDDVPDPSVIKDFALKNFQEVDDYILK 152
           S D+PDPSV+KDFA+KNF EVD+Y+L+
Sbjct: 125 STDIPDPSVVKDFAVKNFLEVDEYVLQ 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505202|gb|AFK40667.1| unknown [Lotus japonicus]

 Score =  211 bits (537), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 100/145 (68%), Positives = 125/145 (86%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
           GKLEV++++KS+ADK+W ++RDSTT+FPKAF HDYKSI++LEGDGKA GSVR ITYA+GS
Sbjct: 5   GKLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEGDGKAAGSVRHITYAEGS 64

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKA 125
           P+VK STEKI+  D+  K V+Y VIDG+LL+YYK FKG +SV   GEGS VKW+ E+EKA
Sbjct: 65  PLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGEGSEVKWSAEYEKA 124

Query: 126 SDDVPDPSVIKDFALKNFQEVDDYI 150
           S DVPDPSV+KDFA+KNF EVD+Y+
Sbjct: 125 STDVPDPSVVKDFAVKNFLEVDEYV 149

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434889|ref|XP_004135228.1| PREDICTED: MLP-like protein 423-like [Cucumis sativus] gi|449478536|ref|XP_004155345.1| PREDICTED: MLP-like protein 423-like [Cucumis sativus]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 105/151 (69%), Positives = 125/151 (82%), Gaps = 3/151 (1%)

Query: 1   MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLIT 60
           MAS  G L VEL+VKS ADKFW ++RDST +FPKAF HDYKSI+VLEGDGKA GS+RLIT
Sbjct: 1   MAS-DGTLSVELDVKSVADKFWKNMRDSTIIFPKAFPHDYKSIEVLEGDGKAVGSIRLIT 59

Query: 61  YADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGE--GSLVKW 118
           Y++GSPIVK S E+IE VDE  K V+Y VI+GDLLKYYK+FKG ++V PK E  GS VKW
Sbjct: 60  YSEGSPIVKESKERIEAVDEEKKTVSYSVIEGDLLKYYKSFKGHIAVIPKEEENGSSVKW 119

Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDY 149
           +CEFEKAS+++PDP  IKDF +KNF E+DDY
Sbjct: 120 SCEFEKASEEIPDPHAIKDFVVKNFMELDDY 150

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581166|ref|XP_002531396.1| Major latex protein, putative [Ricinus communis] gi|223528989|gb|EEF30980.1| Major latex protein, putative [Ricinus communis]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/148 (67%), Positives = 122/148 (82%)

Query: 3   SAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA 62
           +A G L V +E+KSS DKFWGSIRDST+LFPK F   YKSI+VLEGDGKA GSVRL TYA
Sbjct: 2   AASGTLHVAVEIKSSPDKFWGSIRDSTSLFPKFFPDQYKSIEVLEGDGKAAGSVRLFTYA 61

Query: 63  DGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEF 122
           +GSPIVK+S E+I+ V EA K V+Y VI+GDLLKYYK FKG ++V PKG+GSLV+W+CE+
Sbjct: 62  EGSPIVKISKERIDVVHEAEKKVSYSVIEGDLLKYYKVFKGHITVLPKGDGSLVEWSCEY 121

Query: 123 EKASDDVPDPSVIKDFALKNFQEVDDYI 150
           EK SD+V  P +IKDF +KNF+EVD+ I
Sbjct: 122 EKTSDEVEVPHIIKDFVVKNFKEVDELI 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424742|ref|XP_002267219.1| PREDICTED: MLP-like protein 423 [Vitis vinifera] gi|296086515|emb|CBI32104.3| unnamed protein product [Vitis vinifera]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/153 (64%), Positives = 124/153 (81%), Gaps = 3/153 (1%)

Query: 1   MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLIT 60
           MAS   KLEV++EVK +A+K+W SIRDS T+FPKAF   YK I+VLEGDGK+ GSVR IT
Sbjct: 1   MAS---KLEVDVEVKCNAEKYWESIRDSNTIFPKAFPDQYKCIKVLEGDGKSVGSVRHIT 57

Query: 61  YADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWAC 120
           Y +GSP+VK S E+++ VDEA+K V+Y VI GDLLKYYK FK  + + PKG+GSLVKW C
Sbjct: 58  YGEGSPLVKESEERVDIVDEADKKVSYSVIGGDLLKYYKNFKATLVITPKGDGSLVKWTC 117

Query: 121 EFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153
           +FEKAS ++PDP+VIK+FA+KNF E+DDYI K 
Sbjct: 118 DFEKASAEIPDPNVIKEFAVKNFIELDDYIHKT 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776917|emb|CAN76954.1| hypothetical protein VITISV_008439 [Vitis vinifera]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/152 (65%), Positives = 124/152 (81%), Gaps = 3/152 (1%)

Query: 1   MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLIT 60
           MAS   KLEV++EVK +A+K+W SIRDS T+FPKAF   YK I+VLEGDGK+ GSVR IT
Sbjct: 1   MAS---KLEVDVEVKCNAEKYWESIRDSNTIFPKAFPDQYKCIKVLEGDGKSVGSVRHIT 57

Query: 61  YADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWAC 120
           Y +GSP+VK S E+++ VDEA+K V+Y VI GDLLKYYK FK  + + PKG+GSLVKW C
Sbjct: 58  YGEGSPLVKESEERVDIVDEADKKVSYSVIGGDLLKYYKNFKATLVITPKGDGSLVKWTC 117

Query: 121 EFEKASDDVPDPSVIKDFALKNFQEVDDYILK 152
           +FEKAS ++PDP+VIK+FA+KNF E+DDYI K
Sbjct: 118 DFEKASAEIPDPNVIKEFAVKNFIELDDYIHK 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486019|ref|XP_003613297.1| MLP-like protein [Medicago truncatula] gi|217073650|gb|ACJ85185.1| unknown [Medicago truncatula] gi|355514632|gb|AES96255.1| MLP-like protein [Medicago truncatula] gi|388514679|gb|AFK45401.1| unknown [Medicago truncatula]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 87/145 (60%), Positives = 120/145 (82%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
           GKLEV++E+KS+ DK+W +IRDSTT+FPKAF HDYKSI+++EGDGKAPGS+R  TYA+GS
Sbjct: 7   GKLEVDIELKSNVDKYWQTIRDSTTIFPKAFPHDYKSIEIIEGDGKAPGSIRHFTYAEGS 66

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKA 125
            + K STEKI+  D+  +  TY +I+GDLL+YYK+FKG +++ P GEG  +KW  E+ K 
Sbjct: 67  QLAKSSTEKIDAADDEKRTATYCIIEGDLLQYYKSFKGHLALIPVGEGCEMKWCAEYVKV 126

Query: 126 SDDVPDPSVIKDFALKNFQEVDDYI 150
           S+D+PDPS++K+FA+KNF EVD+Y+
Sbjct: 127 SNDIPDPSIVKNFAVKNFIEVDEYV 151

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807353|ref|NP_001241124.1| uncharacterized protein LOC100783267 [Glycine max] gi|255628475|gb|ACU14582.1| unknown [Glycine max] gi|255637021|gb|ACU18843.1| unknown [Glycine max]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/145 (62%), Positives = 121/145 (83%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
           GKLEV++++KS+ADK+W ++R+ST +FPKAF HDYKSI+VLEGDGK+PGS+R I+Y +GS
Sbjct: 5   GKLEVDIDLKSNADKYWQTLRNSTEIFPKAFPHDYKSIEVLEGDGKSPGSIRHISYGEGS 64

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKA 125
           P+VK S EKIE VDE  KVV+Y +IDG+LL++YK FKG +SV P G+G  VKW+  +EK 
Sbjct: 65  PLVKSSFEKIEAVDEEKKVVSYTIIDGELLQHYKTFKGDISVTPIGDGCEVKWSAVYEKV 124

Query: 126 SDDVPDPSVIKDFALKNFQEVDDYI 150
           S D+ DP+++KDFA+KNF EVD Y+
Sbjct: 125 SHDISDPTLVKDFAVKNFLEVDAYV 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
TAIR|locus:2199932	155	MLP423 "MLP-like protein 423"	0.954	0.948	0.605	4.2e-47
TAIR|locus:2013930	316	MLP34 "AT1G70850" [Arabidopsis	0.935	0.455	0.382	1.5e-21
TAIR|locus:2014000	335	MLP28 "AT1G70830" [Arabidopsis	0.961	0.441	0.366	3.9e-21
TAIR|locus:2013970	171	MLP31 "AT1G70840" [Arabidopsis	0.961	0.865	0.372	1.3e-20
TAIR|locus:2013950	158	MLP43 "AT1G70890" [Arabidopsis	0.961	0.936	0.359	1.5e-19
TAIR|locus:2206737	152	MLP165 "AT1G35260" [Arabidopsi	0.915	0.927	0.369	1.7e-18
TAIR|locus:2143804	164	AT5G28000 "AT5G28000" [Arabido	0.967	0.908	0.348	2.2e-18
TAIR|locus:2143809	166	AT5G28010 "AT5G28010" [Arabido	0.935	0.867	0.342	4.6e-18
UNIPROTKB|P85524	150	P85524 "Kirola" [Actinidia del	0.941	0.966	0.317	1.2e-17
TAIR|locus:2201195	160	AT1G23130 "AT1G23130" [Arabido	0.948	0.912	0.357	1.8e-16

TAIR|locus:2199932 MLP423 "MLP-like protein 423" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 89/147 (60%), Positives = 118/147 (80%)

Query:     6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
             G L VE+EVKS A+KFW ++ D   LFPKAF +DYK+IQVL GDG APGS+RLITY +GS
Sbjct:     5 GVLHVEVEVKSPAEKFWVALGDGINLFPKAFPNDYKTIQVLAGDGNAPGSIRLITYGEGS 64

Query:    66 PIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKA 125
             P+VK+S E+IE VD  NK ++Y +I G++L+YYK FKG ++V PK  GSL+KW+ EFEK 
Sbjct:    65 PLVKISAERIEAVDLENKSMSYSIIGGEMLEYYKTFKGTITVIPKDGGSLLKWSGEFEKT 124

Query:   126 SDDVPDPSVIKDFALKNFQEVDDYILK 152
             + ++ DP VIKDFA+KNF+E+D+Y+LK
Sbjct:   125 AHEIDDPHVIKDFAVKNFKEIDEYLLK 151

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2013930 MLP34 "AT1G70850" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 57/149 (38%), Positives = 86/149 (57%)

Query:     6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DG 64
             GKLE E+E+K+SA +F            KA   + +S  + EGD    GS+    Y  DG
Sbjct:    11 GKLETEVEIKASAGQFHHMFAGKPHHVSKASPGNIQSCDLHEGDWGTVGSIVFWNYVHDG 70

Query:    65 SPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKWACEF 122
                 KV+ E+IE V+    ++T++VI+GDL+K YK+F   + V PK  G GS+V W  E+
Sbjct:    71 E--AKVAKERIEAVEPEKNLITFRVIEGDLMKEYKSFLITIQVTPKHGGPGSIVHWHLEY 128

Query:   123 EKASDDVPDPSVIKDFALKNFQEVDDYIL 151
             EK SD+V  P  +  F ++  QE+D+++L
Sbjct:   129 EKISDEVAHPETLLQFCVEVSQEIDEHLL 157

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2014000 MLP28 "AT1G70830" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 56/153 (36%), Positives = 88/153 (57%)

Query:     2 ASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY 61
             +S  GKLE ++E+K+SADKF            KA   + +   + EGD    GS+    Y
Sbjct:    20 SSLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNY 79

Query:    62 A-DGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKW 118
               DG    KV+ E+IE V+    ++T++VI+GDL+K YK+F   + V PK  G GS+V W
Sbjct:    80 VHDGE--AKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHW 137

Query:   119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151
               E+EK S++V  P  +  F ++  +E+D+++L
Sbjct:   138 HLEYEKISEEVAHPETLLQFCVEVSKEIDEHLL 170

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2013970 MLP31 "AT1G70840" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 57/153 (37%), Positives = 85/153 (55%)

Query:     2 ASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY 61
             +S  GKLE ++E+K+SA KF            KA     +  ++ EGD    GS+    Y
Sbjct:    18 SSLCGKLETDIEIKASAGKFHHMFAGRPHHVSKATPGKIQGCELHEGDWGKVGSIVFWNY 77

Query:    62 A-DGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKW 118
               DG    KV+ E+IE V+    ++T++VI+GDLLK YK+F   + V PK  G GS+V W
Sbjct:    78 VHDGE--AKVAKERIEAVEPEKNLITFRVIEGDLLKEYKSFVITIQVTPKRGGPGSVVHW 135

Query:   119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151
               E+EK  D V  P    DF ++  +E+D+++L
Sbjct:   136 HVEYEKIDDKVAHPETFLDFCVEVSKEIDEHLL 168

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2013950 MLP43 "AT1G70890" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 55/153 (35%), Positives = 85/153 (55%)

Query:     2 ASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY 61
             +S  GKLE E+E+K+SA KF     +      KA        ++ EGD    GS+ +  Y
Sbjct:     5 SSLVGKLETEVEIKASAKKFHHMFTERPHHVSKATPDKIHGCELHEGDWGKVGSIVIWKY 64

Query:    62 A-DGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK-GE-GSLVKW 118
               DG   + V   KIE VD    ++T+KV++GDL+  YK+F   + V PK GE GS+  W
Sbjct:    65 VHDGK--LTVGKNKIEAVDPEKNLITFKVLEGDLMNEYKSFAFTLQVTPKQGESGSIAHW 122

Query:   119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151
               E+EK S++V  P  +  F ++  +E+D+++L
Sbjct:   123 HLEYEKISEEVAHPETLLQFCVEISKEIDEHLL 155

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2206737 MLP165 "AT1G35260" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 55/149 (36%), Positives = 90/149 (60%)

Query:     7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGS 65
             ++EV++++K+ ADKF   IR S  + PKA +H  K   +LEG+    GS+ L     DG 
Sbjct:     5 EIEVDVDIKTRADKFHKFIRRSQHV-PKA-THYIKGCDLLEGEWGKVGSILLWKLVFDGE 62

Query:    66 PIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAF-KGIVSVNPK--GEGSLVKWACEF 122
             P  +VS + IE +DE   V+  +V++G L K YK+F K +  ++PK  G GS+VKW  ++
Sbjct:    63 P--RVSKDMIEVIDEEKNVIQLRVLEGPLKKEYKSFLKTMKVMSPKHGGPGSVVKWNMKY 120

Query:   123 EKASDDVPDPSVIKDFALKNFQEVDDYIL 151
             E+   +V  P+ +  F ++  +E+D Y+L
Sbjct:   121 ERIDQNVDHPNRLLQFFVEVTKEIDQYLL 149

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2143804 AT5G28000 "AT5G28000" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 53/152 (34%), Positives = 85/152 (55%)

Query:     2 ASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY 61
             +S  G++EVE+++KS A+KF+           KA S   ++  +LEG+     S+    Y
Sbjct:    11 SSLWGEVEVEVDIKSPAEKFYQVYVGRPDHVAKATSSKVQACDLLEGEWGTISSIVNWNY 70

Query:    62 ADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKWA 119
                    KV+ E+IE V+   K++ ++VI+GD+L  YK F   +SV PK  G GS+ KW 
Sbjct:    71 VYAGK-AKVAKERIELVEPEKKLIKFRVIEGDVLAVYKNFFITISVTPKEGGVGSVAKWH 129

Query:   120 CEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151
              E+EK   +VPDP     F  +  +E+D+++L
Sbjct:   130 LEYEKNDVNVPDPENFLPFLAEMTKEIDEHLL 161

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2143809 AT5G28010 "AT5G28010" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 51/149 (34%), Positives = 85/149 (57%)

Query:     6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DG 64
             GKLEVE+E+K+ A  F+           KA   + +S  + +G+    GS+    Y  +G
Sbjct:    17 GKLEVEVEIKAPAAIFYHIYAGRPHHVAKATPRNVQSCDLHDGEWGTVGSIVYWNYVHEG 76

Query:    65 SPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKWACEF 122
                 KV+ E+IE V+   K++ ++VI+GD++  YK+F   + V PK  G GS+VKW  E+
Sbjct:    77 Q--AKVAKERIELVEPEKKLIKFRVIEGDVMAEYKSFLITIQVTPKEGGTGSVVKWHIEY 134

Query:   123 EKASDDVPDPSVIKDFALKNFQEVDDYIL 151
             EK  ++VP P  +  F  +  +E+D+++L
Sbjct:   135 EKIDENVPHPENLLPFFAEMTKEIDEHLL 163

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

UNIPROTKB|P85524 P85524 "Kirola" [Actinidia deliciosa (taxid:3627)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 47/148 (31%), Positives = 82/148 (55%)

Query:     6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DG 64
             GK+  ++E+ S    F+   R    L  +    + + + +LEG+    GSV    Y  DG
Sbjct:     5 GKMVKQVEILSDGIVFYEIFRYRLYLISEMSPVNIQGVDLLEGNWGTVGSVIFFKYTIDG 64

Query:    65 SPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEK 124
                 K + + +E +DE  K VT+K+++GDL++ YK F  IV V+ KGE + V W   +EK
Sbjct:    65 KE--KTAKDIVEAIDEETKSVTFKIVEGDLMELYKTFIIIVQVDTKGEHNSVTWTFHYEK 122

Query:   125 ASDDVPDPSVIKDFALKNFQEVDDYILK 152
               +DV +P+ + +F ++  ++++ Y LK
Sbjct:   123 LKEDVEEPNTLMNFCIEITKDIETYHLK 150

GO:0016068 "type I hypersensitivity" evidence=IDA

TAIR|locus:2201195 AT1G23130 "AT1G23130" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 55/154 (35%), Positives = 86/154 (55%)

Query:     2 ASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGD-GKAPGSVRLIT 60
             +S  G+LEV++E+K+SA KF   +        KA + D +   + EG+ GK  GSV    
Sbjct:     8 SSLQGELEVDIEIKASAKKFHHMLSGRPQDVAKA-TPDIQGCALHEGEFGKV-GSVIFWN 65

Query:    61 YA-DGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVK 117
             YA DG P  KV+ E+IE VD+   ++  +VIDGDL K +K+F   +   PK  G GS+VK
Sbjct:    66 YAIDGQP--KVARERIEAVDQEKNLLVLRVIDGDLTKEFKSFLVTIQATPKLRGPGSVVK 123

Query:   118 WACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151
                ++E+  + V  P  + +   K  + +D+ +L
Sbjct:   124 CHLKYERIDEKVAPPEKLLELFAKLTESMDEMLL 157

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93VR4	ML423_ARATH	No assigned EC number	0.6054	0.9545	0.9483	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_X6115 hypothetical protein (152 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	154
smart01037	151	smart01037, Bet_v_1, Pathogenesis-related protein	4e-50
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	9e-44
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	3e-43
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	8e-12
pfam10604	140	pfam10604, Polyketide_cyc2, Polyketide cyclase / d	2e-05

>gnl|CDD|198105 smart01037, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score =  157 bits (398), Expect = 4e-50
 Identities = 59/150 (39%), Positives = 96/150 (64%), Gaps = 4/150 (2%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DG 64
           G LE E+ +K SA+KF+         FPKA  H  + + + EGD  + GS+++  Y  DG
Sbjct: 4   GTLETEVPIKGSAEKFFKRFVSRNHHFPKATGHHIQGVDLHEGDWGSHGSIKIWNYTVDG 63

Query: 65  SPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFE 123
               +V  E+IE VD+  K +T++V++GD+++ YK+FKG + V PK G GS+VKW  E+E
Sbjct: 64  KE--EVFKERIEAVDDEKKTITFRVLEGDVMEEYKSFKGTIQVTPKSGGGSVVKWTLEYE 121

Query: 124 KASDDVPDPSVIKDFALKNFQEVDDYILKA 153
           K ++DVP+P    DF ++  +++D+++LK 
Sbjct: 122 KINEDVPEPEKYMDFVVELTKDIDEHLLKE 151

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10.- Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 151

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score =  141 bits (357), Expect = 9e-44
 Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 2/149 (1%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
           GKLE E+E+K SADKF+ + +    L PKA  H  + ++V EG+    GS++  TY +  
Sbjct: 3   GKLETEVEIKVSADKFYKAFKLEDHLIPKAIPHHIQGVEVHEGEWGTGGSIKKWTYTEDG 62

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEG-SLVKWACEFEK 124
              KV  E+IE  DE NK +TY V++GD+L+ YK+F   + V PK  G S+VKW  E+EK
Sbjct: 63  K-PKVVKERIEADDEKNKTITYSVLEGDVLEDYKSFITTLQVIPKSNGGSIVKWTIEYEK 121

Query: 125 ASDDVPDPSVIKDFALKNFQEVDDYILKA 153
             DDVP+P     F +K  ++++ ++L  
Sbjct: 122 IGDDVPEPEKYLKFVVKLTKDIEAHLLAN 150

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score =  139 bits (353), Expect = 3e-43
 Identities = 59/148 (39%), Positives = 81/148 (54%), Gaps = 4/148 (2%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
           G LE E+E+K  A+K W +    + L P       KS+++LEGDG  PGS++LIT+  G 
Sbjct: 1   GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGG-PGSIKLITFGPGG 59

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDLLK-YYKAFKGIVSVNPKGE-GSLVKWACEFE 123
             VK   E+I+ VDE NK   Y VI+GD+LK  YK++K  +   PKG+ G +VKW  E+E
Sbjct: 60  K-VKYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYE 118

Query: 124 KASDDVPDPSVIKDFALKNFQEVDDYIL 151
           K  D  P    IK    K  +       
Sbjct: 119 KKGDAEPPEEEIKAGKEKALKMFKAVEA 146

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score = 58.9 bits (143), Expect = 8e-12
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 15/136 (11%)

Query: 7   KLEVELEVKSSADKFWGSIRD--STTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADG 64
           K+ V + + + ADK W  + D      +  A +        LEG G   G+VR +T  DG
Sbjct: 2   KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVAS-----CELEGGGPGVGAVRTVTLKDG 56

Query: 65  SPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGE-GSLVKWACEFE 123
             +     E++  +D+A +  +Y++++G L    K +   + V P+G+ G+ V W  EF+
Sbjct: 57  GTVR----ERLLALDDAERRYSYRIVEGPLP--VKNYVATIRVTPEGDGGTRVTWTAEFD 110

Query: 124 KASDDVPDPSVIKDFA 139
              + + D        
Sbjct: 111 -PPEGLTDELARAFLT 125

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

>gnl|CDD|220822 pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 11/139 (7%)

Query: 7   KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSP 66
           K+ V + + +  +K W  + D     P+        +  +E +G  P  V     A G  
Sbjct: 3   KVSVSITIAAPPEKVWALVSDFENW-PRWHP----GVLRVELEGGGPLGVVGTLRAGGGR 57

Query: 67  IVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKAS 126
            V    E++   D A + + Y++++   +  Y    G  +V P G G+ V W  EF+   
Sbjct: 58  TV---REELVEYDPAGRRLEYRIVEPLGVTNYV---GTWTVTPAGGGTRVTWTGEFDPPG 111

Query: 127 DDVPDPSVIKDFALKNFQE 145
               +          + + 
Sbjct: 112 PLGLNGPAAAKAVKGDIEA 130

This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily. Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	100.0
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	100.0
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.78
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.65
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.64
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.62
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.6
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.48
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.47
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.45
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.42
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.38
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.37
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	99.37
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.36
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.32
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.3
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	99.29
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	99.28
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.27
PRK10724	158	hypothetical protein; Provisional	99.11
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	99.11
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	98.98
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.88
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.84
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.79
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	98.71
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.7
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	98.67
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.67
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	98.67
COG5637	217	Predicted integral membrane protein [Function unkn	98.65
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	98.63
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.59
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	98.43
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.39
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	98.24
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	98.19
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	98.17
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	98.16
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	98.1
COG3832	149	Uncharacterized conserved protein [Function unknow	98.08
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	97.36
cd08874	205	START_STARD9-like C-terminal START domain of mamma	97.27
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	97.13
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	97.08
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	97.02
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	96.64
cd08905	209	START_STARD1-like Cholesterol-binding START domain	96.46
COG4276	153	Uncharacterized conserved protein [Function unknow	96.39
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	95.88
cd08913	240	START_STARD14-like Lipid-binding START domain of m	95.87
cd08914	236	START_STARD15-like Lipid-binding START domain of m	95.22
cd08906	209	START_STARD3-like Cholesterol-binding START domain	95.12
cd00177	193	START Lipid-binding START domain of mammalian STAR	94.9
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	94.1
cd08871	222	START_STARD10-like Lipid-binding START domain of m	93.94
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	93.79
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	92.99
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	91.26
smart00234	206	START in StAR and phosphatidylcholine transfer pro	88.84
cd08867	206	START_STARD4_5_6-like Lipid-binding START domain o	88.3
cd08872	235	START_STARD11-like Ceramide-binding START domain o	85.7
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	85.56
KOG3177	227	consensus Oligoketide cyclase/lipid transport prot	83.91

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=100.00  E-value=1.2e-40  Score=244.40  Aligned_cols=148  Identities=47%  Similarity=0.816  Sum_probs=136.1

Q ss_pred             cceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            5 GGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         5 ~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      .++++.++++++||+++|+++++.++++|+++|+.|+|++++||+|+..||||.|+|.+|.+. .++|||++++|+++++
T Consensus         3 ~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~-~~~Kekve~~D~~~~~   81 (151)
T PF00407_consen    3 VGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPF-KYVKEKVEAIDEENKT   81 (151)
T ss_dssp             EEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSE-EEEEEEEEEEETTTTE
T ss_pred             cEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCc-ceeEEEEEeecCCCcE
Confidence            579999999999999999999988889999999999999999999844459999999976664 6899999999999999


Q ss_pred             EEEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhC
Q 031700           85 VTYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA  153 (154)
Q Consensus        85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  153 (154)
                      ++|+++||+++..|++|..++++.|. +++|.++|+++|++.++..++|+.+++++..|+|+||+||++|
T Consensus        82 ~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~K~ieayLlan  151 (151)
T PF00407_consen   82 ITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDFAVGMFKAIEAYLLAN  151 (151)
T ss_dssp             EEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999998889999999999988 4679999999999999998899999999999999999999998

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=100.00  E-value=5.2e-36  Score=219.03  Aligned_cols=145  Identities=40%  Similarity=0.624  Sum_probs=130.9

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCC-ccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLF-PKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l-~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      |+++.+++|+||+|+||+++++|.+.+ +.|.| .|++|++++|+ +++||+|+|+|.+|.. .+++||||+++|+++|+
T Consensus         1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~-~~~GsvR~~~~~~~~~-~~~~kE~l~~~D~~~~~   77 (148)
T cd07816           1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGD-GGPGSIKLITFGPGGK-VKYVKERIDAVDEENKT   77 (148)
T ss_pred             CcEEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecC-CCCceEEEEEEcCCCc-ceEEEEEEEEEcccccE
Confidence            578999999999999999999997445 55666 99999999998 4999999999997753 25699999999999999


Q ss_pred             EEEEEEecCccc-ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhC
Q 031700           85 VTYKVIDGDLLK-YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA  153 (154)
Q Consensus        85 ~~Y~~ieg~~~~-~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  153 (154)
                      |+|++++|+++. .|++|.++++|.|. +++|+++|+++|++.++..++|+.+++.+..+++.++.|++.+
T Consensus        78 ~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  148 (148)
T cd07816          78 YKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIKAGKEKALKMFKAVEAYL  148 (148)
T ss_pred             EEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHhHHHHHHHHHHHHHhcC
Confidence            999999999865 69999999999999 5789999999999999999999999999999999999998753

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.78  E-value=2.9e-17  Score=116.06  Aligned_cols=134  Identities=24%  Similarity=0.479  Sum_probs=109.7

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      .++.+++|++|+++||+++.|+. .+++|+| .+++++++++.. ++|+++.+.+..|..    ++++++.+|+.++++.
T Consensus         2 ~i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~-~~~~~~~~~~~~-~~g~~~~~~~~~g~~----~~~~i~~~~~~~~~i~   74 (140)
T cd07821           2 KVTVSVTIDAPADKVWALLSDFG-GLHKWHP-AVASCELEGGGP-GVGAVRTVTLKDGGT----VRERLLALDDAERRYS   74 (140)
T ss_pred             cEEEEEEECCCHHHHHHHHhCcC-chhhhcc-CcceEEeecCCC-CCCeEEEEEeCCCCE----EEEEehhcCccCCEEE
Confidence            57889999999999999999996 6899999 688999887654 689999999987633    7899999988879999


Q ss_pred             EEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCCCCCh---hhHHHHHHHHHHHHHHHH
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDDVPDP---SVIKDFALKNFQEVDDYI  150 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~~~~~---~~~~~~~~~~~k~ie~~l  150 (154)
                      |++.+|+.  .+.++.+++++.|.+ ++|+|+|+.+|++... .+.+   ..+.+.....++.|+++|
T Consensus        75 ~~~~~~~~--~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~  139 (140)
T cd07821          75 YRIVEGPL--PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL  139 (140)
T ss_pred             EEecCCCC--CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence            99998743  367788999999985 5899999999999976 2222   234466777788888776

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.65  E-value=7.3e-14  Score=98.55  Aligned_cols=106  Identities=27%  Similarity=0.565  Sum_probs=86.5

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      +++.++.|++|+++||++++|+. .+++|.| .+.++++++++  ++|..+.+.. .|..   .+++++..+|++++.+.
T Consensus         3 ~~~~~~~v~a~~e~V~~~l~d~~-~~~~w~~-~~~~~~~~~~~--~~~~~~~~~~-~g~~---~~~~~i~~~~~~~~~~~   74 (139)
T PF10604_consen    3 KVEVSIEVPAPPEAVWDLLSDPE-NWPRWWP-GVKSVELLSGG--GPGTERTVRV-AGRG---TVREEITEYDPEPRRIT   74 (139)
T ss_dssp             EEEEEEEESS-HHHHHHHHTTTT-GGGGTST-TEEEEEEEEEC--STEEEEEEEE-CSCS---EEEEEEEEEETTTTEEE
T ss_pred             EEEEEEEECCCHHHHHHHHhChh-hhhhhhh-ceEEEEEcccc--ccceeEEEEe-cccc---ceeEEEEEecCCCcEEE
Confidence            78999999999999999999996 6999999 78899987633  4566566664 4422   27899999997799999


Q ss_pred             EEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEe
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEK  124 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~  124 (154)
                      |++. ..   .+..+.+++++.|.++||+|+|+.+|++
T Consensus        75 ~~~~-~~---~~~~~~~~~~~~~~~~gt~v~~~~~~~~  108 (139)
T PF10604_consen   75 WRFV-PS---GFTNGTGRWRFEPVGDGTRVTWTVEFEP  108 (139)
T ss_dssp             EEEE-SS---SSCEEEEEEEEEEETTTEEEEEEEEEEE
T ss_pred             EEEE-ec---ceeEEEEEEEEEEcCCCEEEEEEEEEEE
Confidence            9996 22   2457789999999987899999999998

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.64  E-value=1.7e-14  Score=103.29  Aligned_cols=134  Identities=16%  Similarity=0.289  Sum_probs=93.2

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCC---ceeeeeeEEEEeeeCCCcE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS---PIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~---~~~~~~kErl~~~D~~~~~   84 (154)
                      ++.++.|++|+++||+++.|+. .+|+|+| .+++++++++.+  .+.........+.   .+...+..++.+.++.++.
T Consensus         1 ~~~~~~i~a~~~~Vw~~l~D~~-~~~~w~p-~v~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   76 (144)
T cd08866           1 VVARVRVPAPPETVWAVLTDYD-NLAEFIP-NLAESRLLERNG--NRVVLEQTGKQGILFFKFEARVVLELREREEFPRE   76 (144)
T ss_pred             CeEEEEECCCHHHHHHHHhChh-hHHhhCc-CceEEEEEEcCC--CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCce
Confidence            4678999999999999999996 6999999 788999887643  1221111100110   0111244556667666899


Q ss_pred             EEEEEEecCcccceeEEEEEEEEeeC-C-CCeEEEEEEEEEeCCCCCCChh---hHHHHHHHHHHHHHHHH
Q 031700           85 VTYKVIDGDLLKYYKAFKGIVSVNPK-G-EGSLVKWACEFEKASDDVPDPS---VIKDFALKNFQEVDDYI  150 (154)
Q Consensus        85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~-~-~~s~v~Wt~~~e~~~~~~~~~~---~~~~~~~~~~k~ie~~l  150 (154)
                      +.|++++|+    +..|.+++++.|. + ++|+++|+.+++|... .+.+.   .+.+.+..++++|.+.+
T Consensus        77 i~~~~~~g~----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~-~p~~l~~~~~~~~~~~~l~~lr~~a  142 (144)
T cd08866          77 LDFEMVEGD----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF-APVFLVEFVLRQDLPTNLLAIRAEA  142 (144)
T ss_pred             EEEEEcCCc----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999875    4788999999998 4 5899999999999864 22211   22344567777777654

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.62  E-value=5e-14  Score=99.25  Aligned_cols=132  Identities=13%  Similarity=0.206  Sum_probs=96.9

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEEE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      ++.++.|++|+++||+++.|+. .+++|.| .+.+++.+++...++|+...+... .|....  ++++++.+| +++.+.
T Consensus         1 ~~~~~~i~ap~~~Vw~~l~d~~-~~~~w~~-~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~v~~~~-p~~~~~   75 (140)
T cd08865           1 VEESIVIERPVEEVFAYLADFE-NAPEWDP-GVVEVEKITDGPVGVGTRYHQVRKFLGRRIE--LTYEITEYE-PGRRVV   75 (140)
T ss_pred             CceEEEEcCCHHHHHHHHHCcc-chhhhcc-CceEEEEcCCCCCcCccEEEEEEEecCceEE--EEEEEEEec-CCcEEE
Confidence            3678999999999999999996 6999999 577888775544578999988775 454433  688999886 678999


Q ss_pred             EEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChh-----hHHHHHHHHHHHHHHHH
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPS-----VIKDFALKNFQEVDDYI  150 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~-----~~~~~~~~~~k~ie~~l  150 (154)
                      |....|+.     .+..++++.|.+++|+++|+.+|+...-. ....     .++..+..++++|.+++
T Consensus        76 ~~~~~~~~-----~~~~~~~~~~~~~~t~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~lk~~~  138 (140)
T cd08865          76 FRGSSGPF-----PYEDTYTFEPVGGGTRVRYTAELEPGGFA-RLLDPLMAPAFRRRARAALENLKALL  138 (140)
T ss_pred             EEecCCCc-----ceEEEEEEEEcCCceEEEEEEEEccchhH-HHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            99876532     35789999998778999999999973211 1111     22234556666666654

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.60  E-value=1.7e-13  Score=97.08  Aligned_cols=113  Identities=19%  Similarity=0.273  Sum_probs=83.1

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      +++.++.|++|+++||+++.|+. .+|+|+| .+.+++.+++++++.+....+++..+..... ..-+++ .+ ..+.++
T Consensus         3 ~v~~s~~i~ap~e~V~~~l~D~~-~~~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~i~   77 (140)
T cd07819           3 KVSREFEIEAPPAAVMDVLADVE-AYPEWSP-KVKSVEVLLRDNDGRPEMVRIGVGAYGIKDT-YALEYT-WD-GAGSVS   77 (140)
T ss_pred             eEEEEEEEeCCHHHHHHHHhChh-hhhhhCc-ceEEEEEeccCCCCCEEEEEEEEeeeeEEEE-EEEEEE-Ec-CCCcEE
Confidence            78999999999999999999996 6999999 6889998765432333444455543321101 111222 22 367899


Q ss_pred             EEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCC
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASD  127 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~  127 (154)
                      |+..+|..   ...+.+++++.|.+++|+|+|+.++++...
T Consensus        78 ~~~~~~~~---~~~~~~~~~~~~~~~~t~vt~~~~~~~~~~  115 (140)
T cd07819          78 WTLVEGEG---NRSQEGSYTLTPKGDGTRVTFDLTVELTVP  115 (140)
T ss_pred             EEEecccc---eeEEEEEEEEEECCCCEEEEEEEEEEecCC
Confidence            99998763   567889999999977999999999998764

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.48  E-value=3.1e-12  Score=91.35  Aligned_cols=133  Identities=17%  Similarity=0.255  Sum_probs=92.0

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEEE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      ++.++.|++|+++||+++.|+. .+|+|+|.  .+++.+++++ +...++.+... .|... . . +....+|++.+++.
T Consensus         1 ~~~s~~i~ap~~~V~~~l~D~~-~~p~~~p~--~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~-~-~~~~~~~~~~~~i~   73 (142)
T cd08861           1 VEHSVTVAAPAEDVYDLLADAE-RWPEFLPT--VHVERLELDG-GVERLRMWATAFDGSVH-T-W-TSRRVLDPEGRRIV   73 (142)
T ss_pred             CeEEEEEcCCHHHHHHHHHhHH-hhhccCCC--ceEEEEEEcC-CEEEEEEEEEcCCCcEE-E-E-EEEEEEcCCCCEEE
Confidence            4689999999999999999996 69999995  5666555432 11245556665 44432 2 2 34445777799999


Q ss_pred             EEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCCCCChhhHH-----HHHHHHHHHHHHHH
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDDVPDPSVIK-----DFALKNFQEVDDYI  150 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~~~~~~~~~-----~~~~~~~k~ie~~l  150 (154)
                      |..++++.  .+..+.+++++.|.+ ++|.|+|+.+|++.... +-+....     ..+..++++|.+++
T Consensus        74 ~~~~~~~~--~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~lk~~~  140 (142)
T cd08861          74 FRQEEPPP--PVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDS-PEAVPWIRRALDRNSRAELAALRAAA  140 (142)
T ss_pred             EEEeeCCC--ChhhheeEEEEEECCCCcEEEEEEEEEEECCCC-chhHHHHHHHHccccHHHHHHHHHHh
Confidence            99988533  267888999999995 78999999999998652 2222222     22455666665553

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.47  E-value=1.7e-12  Score=92.69  Aligned_cols=132  Identities=20%  Similarity=0.243  Sum_probs=95.9

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEEE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      ++.++.|++|++.||+++.|+. .+|+|+| .+++++++++.+  .+....++.. .|...  .+..++. ++. .++++
T Consensus         1 ~~~s~~i~ap~~~v~~~i~D~~-~~~~~~p-~~~~~~vl~~~~--~~~~~~~~~~~~~~~~--~~~~~~~-~~~-~~~i~   72 (138)
T cd07813           1 YSKSRLVPYSAEQMFDLVADVE-RYPEFLP-WCTASRVLERDE--DELEAELTVGFGGIRE--SFTSRVT-LVP-PESIE   72 (138)
T ss_pred             CeEEEEcCCCHHHHHHHHHHHH-hhhhhcC-CccccEEEEcCC--CEEEEEEEEeeccccE--EEEEEEE-ecC-CCEEE
Confidence            3678999999999999999996 6999999 788999998653  3455556655 44332  2445554 665 77899


Q ss_pred             EEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCCCCC--hhhHHHHHHHHHHHHHHHHh
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDDVPD--PSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~~~~--~~~~~~~~~~~~k~ie~~l~  151 (154)
                      +..++|+    ++.+.+++++.|.+ ++|+|+|..+|++..+....  -..+.+....+++++++.+.
T Consensus        73 ~~~~~g~----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~  136 (138)
T cd07813          73 AELVDGP----FKHLEGEWRFKPLGENACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAK  136 (138)
T ss_pred             EEecCCC----hhhceeEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9988884    46788999999995 78999999999998642111  11233555666777666554

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.45  E-value=1.2e-11  Score=87.34  Aligned_cols=106  Identities=13%  Similarity=0.117  Sum_probs=81.3

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      +++.++.|+||+++||+++.|+. .+++|+| .+++++..++.. ++|+..+++...+..    +..++.+++ +.++++
T Consensus         2 ~~~~~~~i~Ap~~~Vw~~~~d~~-~~~~w~~-~~~~~~~~~~~~-~~G~~~~~~~~~~~~----~~~~i~~~~-p~~~~~   73 (138)
T cd08862           2 KFEATIVIDAPPERVWAVLTDVE-NWPAWTP-SVETVRLEGPPP-AVGSSFKMKPPGLVR----STFTVTELR-PGHSFT   73 (138)
T ss_pred             EEEEEEEEcCCHHHHHHHHHhhh-hcccccC-cceEEEEecCCC-CCCcEEEEecCCCCc----eEEEEEEec-CCCEEE
Confidence            57899999999999999999996 6999999 688998776543 678877776544333    567888887 556788


Q ss_pred             EEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeC
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKA  125 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~  125 (154)
                      ++.... .    ..+..++++.+.+ ++|+++|+.+|...
T Consensus        74 ~~~~~~-~----~~~~~~~~~~~~~~~~t~l~~~~~~~~~  108 (138)
T cd08862          74 WTGPAP-G----ISAVHRHEFEAKPDGGVRVTTSESLSGP  108 (138)
T ss_pred             EEecCC-C----EEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence            876432 1    2445788998885 78999999988754

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.42  E-value=2.1e-11  Score=83.88  Aligned_cols=112  Identities=19%  Similarity=0.347  Sum_probs=89.0

Q ss_pred             EEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEEEE
Q 031700            9 EVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYK   88 (154)
Q Consensus         9 ~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~Y~   88 (154)
                      +.++.|++|+++||+++.|+. .+++|.| .+.+++..++.....|....+.+..+...  ....++..+++ +..++|.
T Consensus         2 ~~~~~i~a~~~~v~~~l~d~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~-~~~~~~~   76 (141)
T cd07812           2 EASIEIPAPPEAVWDLLSDPE-RWPEWSP-GLERVEVLGGGEGGVGARFVGGRKGGRRL--TLTSEVTEVDP-PRPGRFR   76 (141)
T ss_pred             cEEEEeCCCHHHHHHHHhChh-hhhhhCc-ccceEEEcCCCCccceeEEEEEecCCccc--cceEEEEEecC-CCceEEE
Confidence            578899999999999999996 6999999 68888877765456777777766523322  26788887765 7789999


Q ss_pred             EEecCcccceeEEEEEEEEeeCCC-CeEEEEEEEEEeCCCC
Q 031700           89 VIDGDLLKYYKAFKGIVSVNPKGE-GSLVKWACEFEKASDD  128 (154)
Q Consensus        89 ~ieg~~~~~~~~~~~t~~v~~~~~-~s~v~Wt~~~e~~~~~  128 (154)
                      ...++..   ..+..++++.+.++ +|+++|+.++++....
T Consensus        77 ~~~~~~~---~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~  114 (141)
T cd07812          77 VTGGGGG---VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPL  114 (141)
T ss_pred             EecCCCC---cceeEEEEEEECCCCcEEEEEEEEEecCCcc
Confidence            9887653   57788999999965 8999999999988764

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.38  E-value=1.1e-10  Score=82.33  Aligned_cols=134  Identities=12%  Similarity=0.075  Sum_probs=92.5

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CC-CceeeeeeEEEEeeeCCCcE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DG-SPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G-~~~~~~~kErl~~~D~~~~~   84 (154)
                      .++.++.|++|+++||+++.|+. .+++|+| .+.+++...  . ++|+...+.+. ++ ...  .+.+++.++| +.++
T Consensus         1 ~v~~~~~i~ap~~~Vw~~~~d~~-~~~~w~~-~~~~~~~~~--~-~~G~~~~~~~~~~~~~~~--~~~~~v~~~~-p~~~   72 (141)
T cd07822           1 TISTEIEINAPPEKVWEVLTDFP-SYPEWNP-FVRSATGLS--L-ALGARLRFVVKLPGGPPR--SFKPRVTEVE-PPRR   72 (141)
T ss_pred             CeEEEEEecCCHHHHHHHHhccc-cccccCh-hheeEeccc--c-CCCCEEEEEEeCCCCCcE--EEEEEEEEEc-CCCE
Confidence            36889999999999999999996 6999998 566665421  2 57888888776 32 332  2678889886 5789


Q ss_pred             EEEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCC---ChhhHHHHHHHHHHHHHHHH
Q 031700           85 VTYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVP---DPSVIKDFALKNFQEVDDYI  150 (154)
Q Consensus        85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~---~~~~~~~~~~~~~k~ie~~l  150 (154)
                      +.|+...++..  .-....++.+.|. +++|+++|+..|........   -...+.+.+..+++.|.+++
T Consensus        73 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  140 (141)
T cd07822          73 LAWRGGLPFPG--LLDGEHSFELEPLGDGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARA  140 (141)
T ss_pred             eEEEecCCCCc--EeeEEEEEEEEEcCCCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhh
Confidence            99998776542  2345578999998 68899999988875432111   01123344555556665553

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.37  E-value=1.1e-10  Score=85.04  Aligned_cols=113  Identities=22%  Similarity=0.394  Sum_probs=83.5

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcE
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      |+.+.+++|++||+.||+++.|.. ..|.|+| .++++++++.++.+.|..-++.+. .|... .|.-|+  ..|...++
T Consensus         1 ~~~~~si~i~a~~~~v~~lvaDv~-~~P~~~~-~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~-~w~s~~--~~~~~~~~   75 (146)
T cd08860           1 GRTDNSIVIDAPLDLVWDMTNDIA-TWPDLFS-EYAEAEVLEEDGDTVRFRLTMHPDANGTVW-SWVSER--TLDPVNRT   75 (146)
T ss_pred             CcceeEEEEcCCHHHHHHHHHhhh-hhhhhcc-ceEEEEEEEecCCeEEEEEEEEeccCCEEE-EEEEEE--EecCCCcE
Confidence            467899999999999999999996 6999999 688999887654455533222332 44332 333332  26788888


Q ss_pred             EEEE-EEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCC
Q 031700           85 VTYK-VIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASD  127 (154)
Q Consensus        85 ~~Y~-~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~  127 (154)
                      +.+. ..+|    ++....++++|.|.++||+|++..+|+..++
T Consensus        76 i~~~~~~~~----p~~~m~~~W~f~~~~~gT~V~~~~~~~~~~~  115 (146)
T cd08860          76 VRARRVETG----PFAYMNIRWEYTEVPEGTRMRWVQDFEMKPG  115 (146)
T ss_pred             EEEEEecCC----CcceeeeeEEEEECCCCEEEEEEEEEEECCC
Confidence            8874 2232    2678889999999866799999999997754

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.37  E-value=8.7e-11  Score=84.87  Aligned_cols=109  Identities=18%  Similarity=0.379  Sum_probs=80.7

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEc-CCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCCc
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLE-GDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~e-G~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~~   83 (154)
                      .+..+..|++|+++||+++.|+. .+|+|.| .+++++.++ |++.++|+.-++...  .|....  +.-++..+ +..+
T Consensus         2 ~~~~~~~i~ap~e~Vw~~~tD~~-~~~~w~~-~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~v~~~-~p~~   76 (146)
T cd07824           2 RFHTVWRIPAPPEAVWDVLVDAE-SWPDWWP-GVERVVELEPGDEAGIGARRRYTWRGLLPYRLR--FELRVTRI-EPLS   76 (146)
T ss_pred             cceEEEEecCCHHHHHHHHhChh-hcchhhh-ceEEEEEccCCCCCCcceEEEEEEEecCCcEEE--EEEEEEee-cCCc
Confidence            36778899999999999999996 6999999 688998887 333477777655433  232221  44555555 4777


Q ss_pred             EEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCC
Q 031700           84 VVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKAS  126 (154)
Q Consensus        84 ~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~  126 (154)
                      .+.|.. +|++    + ...++++.|.++||.|+++.+++..+
T Consensus        77 ~~~~~~-~g~~----~-~~~~~~~~~~~~gt~vt~~~~~~~~~  113 (146)
T cd07824          77 LLEVRA-SGDL----E-GVGRWTLAPDGSGTVVRYDWEVRTTK  113 (146)
T ss_pred             EEEEEE-EEee----e-EEEEEEEEEcCCCEEEEEEEEEEcCH
Confidence            899984 6653    2 25789999987789999999999765

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.36  E-value=8.1e-11  Score=84.78  Aligned_cols=137  Identities=14%  Similarity=0.126  Sum_probs=91.9

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccce---EEEEc-CCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCC
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKS---IQVLE-GDGKAPGSVRLITYADGSPIVKVSTEKIENVDEA   81 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s---~~~~e-G~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~   81 (154)
                      -+++.++.|++|+++||+++.|+. .+|+|.|. ...   +.... +...++|+...++...+...   ...++..++ .
T Consensus         2 ~~~~~s~~I~ap~e~V~~~i~D~~-~~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~---~~~~v~~~~-p   75 (150)
T cd07818           2 YRVERSIVINAPPEEVFPYVNDLK-NWPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKVGE---GEMEITESV-P   75 (150)
T ss_pred             eEEEEEEEEeCCHHHHHHHHhCcc-cCcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcccc---eEEEEEecC-C
Confidence            368999999999999999999996 69999993 433   22111 22237888877776542111   345667774 6


Q ss_pred             CcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCC-----C-hhhHHHHHHHHHHHHHHHH
Q 031700           82 NKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVP-----D-PSVIKDFALKNFQEVDDYI  150 (154)
Q Consensus        82 ~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~-----~-~~~~~~~~~~~~k~ie~~l  150 (154)
                      ++++.|++..++++.  ....+++.+.|.++||.++|+.+|+.......     . ...+++.+...+++|.+++
T Consensus        76 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~  148 (150)
T cd07818          76 NERIEYELRFIKPFE--ATNDVEFTLEPVGGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVL  148 (150)
T ss_pred             CcEEEEEEEecCCcc--ccceEEEEEEEcCCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            788999998644321  26678999999988899999999986654210     0 1122333455555555554

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.32  E-value=1.8e-10  Score=82.34  Aligned_cols=135  Identities=15%  Similarity=0.201  Sum_probs=93.2

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCC-CCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGD-GKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~-~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      ++.++.|+||+++||+++.|+. .+|+|.|.... .....++ .-++|+..++.+. .|....  +..+++.++ .++.+
T Consensus         2 i~~~~~i~ap~e~Vw~~l~d~~-~~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~g~~~~--~~~~v~~~~-p~~~l   76 (144)
T cd07825           2 VSVSRTVDAPAEAVFAVLADPR-RHPEIDGSGTV-REAIDGPRILAVGDVFRMAMRLDGGPYR--ITNHVVAFE-ENRLI   76 (144)
T ss_pred             eEEEEEEeCCHHHHHHHHhCcc-ccceeCCCCcc-ccccCCCccCCCCCEEEEEEEcCCCceE--EEEEEEEEC-CCCEE
Confidence            6889999999999999999996 69999984332 2222333 2378998888876 455432  566788775 67779


Q ss_pred             EEEEE-ecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCC--CC-ChhhHHHHHHHHHHHHHHHH
Q 031700           86 TYKVI-DGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDD--VP-DPSVIKDFALKNFQEVDDYI  150 (154)
Q Consensus        86 ~Y~~i-eg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~--~~-~~~~~~~~~~~~~k~ie~~l  150 (154)
                      .|+.. .+..   ......++.+.|.+ ++|+++++.+|...+..  .. .......-....+++|++||
T Consensus        77 ~~~~~~~~~~---~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~  143 (144)
T cd07825          77 AWRPGPAGQE---PGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA  143 (144)
T ss_pred             EEEccCCCCC---CCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence            99864 2222   12345688888885 78999999999866441  11 12234455778888888876

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.30  E-value=1.9e-10  Score=81.35  Aligned_cols=106  Identities=19%  Similarity=0.294  Sum_probs=78.7

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEEE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTY   87 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~Y   87 (154)
                      ++.++.|++|+++||+++.|+. .+|+|.| .++++++++|.    +....+....|...  .+..++..+ +.++.+.|
T Consensus         2 v~~~i~I~ap~e~V~~~~~D~~-~~~~w~~-~~~~~~~~~~~----~~~~~~~~~~g~~~--~~~~~v~~~-~~~~~i~~   72 (139)
T cd07817           2 VEKSITVNVPVEEVYDFWRDFE-NLPRFMS-HVESVEQLDDT----RSHWKAKGPAGLSV--EWDAEITEQ-VPNERIAW   72 (139)
T ss_pred             eeEEEEeCCCHHHHHHHHhChh-hhHHHhh-hhcEEEEcCCC----ceEEEEecCCCCcE--EEEEEEecc-CCCCEEEE
Confidence            6789999999999999999996 6999999 68899876542    22223333346543  255666655 46667999


Q ss_pred             EEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCC
Q 031700           88 KVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASD  127 (154)
Q Consensus        88 ~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~  127 (154)
                      ....|..     .+.+++.+.|.+ ++|+++++.+|++...
T Consensus        73 ~~~~~~~-----~~~~~~~f~~~~~~~T~vt~~~~~~~~~~  108 (139)
T cd07817          73 RSVEGAD-----PNAGSVRFRPAPGRGTRVTLTIEYEPPGG  108 (139)
T ss_pred             EECCCCC-----CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence            8876542     456888899874 5899999999998864

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.29  E-value=2e-10  Score=82.12  Aligned_cols=109  Identities=13%  Similarity=0.179  Sum_probs=83.9

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCC--CCCCcEEEEEEcCCC-ceeeeeeEEEEeeeCCCcE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDG--KAPGSVRLITYADGS-PIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~--~~~GsvR~~~~~~G~-~~~~~~kErl~~~D~~~~~   84 (154)
                      ++.++.|++|+++||+.+.|.. .+|+|+| .+.++++++.++  -.+|+.-.+.+..+. .. . .+-+++.++ .++.
T Consensus         1 ~~~s~~I~ap~e~V~~~~~d~~-~~~~~~p-~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~-w~~~it~~~-p~~~   75 (137)
T cd07820           1 LERSTVIPAPIEEVFDFHSRPD-NLERLTP-PWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-R-WTTEITEVE-PPRR   75 (137)
T ss_pred             CeEEEEcCCCHHHHHHHHcCcc-hHHhcCC-CCCCeEEEecCCCcccCCcEEEEEEEecCCce-E-EEEEEEEEc-CCCe
Confidence            4678999999999999999997 5999999 677888874322  256788888887433 33 3 456667664 6778


Q ss_pred             EEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeC
Q 031700           85 VTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKA  125 (154)
Q Consensus        85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~  125 (154)
                      +++..+.|+.    ..+..++.+.|.++||+++++++|++.
T Consensus        76 f~~~~~~G~~----~~w~h~~~f~~~~~gT~vt~~v~~~~p  112 (137)
T cd07820          76 FVDEQVSGPF----RSWRHTHRFEAIGGGTLMTDRVEYRLP  112 (137)
T ss_pred             EEEEeccCCc----hhCEEEEEEEECCCceEEEEEEEEeCC
Confidence            9999887753    566678888888668999999999973

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=99.28  E-value=2.7e-10  Score=80.87  Aligned_cols=113  Identities=10%  Similarity=0.238  Sum_probs=77.5

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcC-CCceeeeeeEEEEeeeCCCcEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD-GSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~-G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      +++.++.|++|+++||+++.|+. .+++|+| .+++++.++++  .......+.+.. +....  .+-++..+| +++.+
T Consensus         2 ~~~~~~~i~a~~e~v~~~l~D~~-~~~~w~p-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~   74 (144)
T cd05018           2 KISGEFRIPAPPEEVWAALNDPE-VLARCIP-GCESLEKIGPN--EYEATVKLKVGPVKGTFK--GKVELSDLD-PPESY   74 (144)
T ss_pred             eeeeEEEecCCHHHHHHHhcCHH-HHHhhcc-chhhccccCCC--eEEEEEEEEEccEEEEEE--EEEEEEecC-CCcEE
Confidence            57899999999999999999996 6999999 67788766532  111111222211 11221  245555554 44667


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCC
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASD  127 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~  127 (154)
                      .+.....+. .....+.+++++.|.+++|+|+|+.+|++.+.
T Consensus        75 ~~~~~~~~~-~~~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~  115 (144)
T cd05018          75 TITGEGKGG-AGFVKGTARVTLEPDGGGTRLTYTADAQVGGK  115 (144)
T ss_pred             EEEEEEcCC-CceEEEEEEEEEEecCCcEEEEEEEEEEEccC
Confidence            777654322 12568889999999877899999999998764

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.27  E-value=1.9e-10  Score=81.20  Aligned_cols=134  Identities=12%  Similarity=0.147  Sum_probs=89.8

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEEE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      ++.+++|+||+++||+++.|+. .+|+|.|+ +..+.   ++....|+.+..... .|...  .+..++..+| +++.+.
T Consensus         2 i~~s~~I~a~~~~Vw~~l~d~~-~~~~w~~~-~~~~~---~~~~~Gg~~~~~~~~~~g~~~--~~~~~i~~~~-~~~~i~   73 (139)
T cd07814           2 ITIEREFDAPPELVWRALTDPE-LLAQWFGP-TTTAE---MDLRVGGRWFFFMTGPDGEEG--WVSGEVLEVE-PPRRLV   73 (139)
T ss_pred             eEEEEEecCCHHHHHHHcCCHH-HHHhhhCc-CCceE---EcccCCceEEEEEECCCCCEE--eccEEEEEEc-CCCeEE
Confidence            6789999999999999999996 69999995 22222   121111666655544 33332  3678889897 668899


Q ss_pred             EEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCC-ChhhHHHHHHHHHHHHHHHH
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVP-DPSVIKDFALKNFQEVDDYI  150 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~-~~~~~~~~~~~~~k~ie~~l  150 (154)
                      |+...++. +..-....++++.|.+++|+++|+.++.+...... --...+.....++..|.+||
T Consensus        74 ~~~~~~~~-~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~  137 (139)
T cd07814          74 FTWAFSDE-TPGPETTVTVTLEETGGGTRLTLTHSGFPEEDAEQEAREGMEEGWTGTLDRLKALL  137 (139)
T ss_pred             EEecccCC-CCCCceEEEEEEEECCCCEEEEEEEEccChHhHHHHHHhCHhhHHHHHHHHHHHHh
Confidence            99987653 11234567888999877899999999987643200 01122344556666666665

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>PRK10724 hypothetical protein; Provisional

Probab=99.11  E-value=3e-09  Score=78.58  Aligned_cols=109  Identities=17%  Similarity=0.309  Sum_probs=83.5

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      .++.++.|++|++++|+++.|.. ..|+|+| ..+++++++-+++  +.+..++.. .|...  .+..|.. ++ ..+++
T Consensus        16 ~i~~~~~v~~s~~~v~~lv~Dve-~yp~flp-~~~~s~vl~~~~~--~~~a~l~v~~~g~~~--~f~srv~-~~-~~~~I   87 (158)
T PRK10724         16 QISRTALVPYSAEQMYQLVNDVQ-SYPQFLP-GCTGSRVLESTPG--QMTAAVDVSKAGISK--TFTTRNQ-LT-SNQSI   87 (158)
T ss_pred             eEEEEEEecCCHHHHHHHHHHHH-HHHHhCc-ccCeEEEEEecCC--EEEEEEEEeeCCccE--EEEEEEE-ec-CCCEE
Confidence            68889999999999999999996 6999999 6778888765432  334555555 44432  2445544 54 45589


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCC
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASD  127 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~  127 (154)
                      .+.+++|+    ++.+.+.+++.|.+ ++|.|++..+|+....
T Consensus        88 ~~~~~~Gp----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~  126 (158)
T PRK10724         88 LMQLVDGP----FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK  126 (158)
T ss_pred             EEEecCCC----hhhccceEEEEECCCCCEEEEEEEEEEEchH
Confidence            99999985    57899999999984 6799999999997664

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=99.11  E-value=5.5e-09  Score=73.43  Aligned_cols=102  Identities=24%  Similarity=0.479  Sum_probs=75.1

Q ss_pred             EcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEEEEEEEec
Q 031700           14 VKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVVTYKVIDG   92 (154)
Q Consensus        14 i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~~Y~~ieg   92 (154)
                      |++|+++||+++.|+. .+|+|+| .++++++++.+++  +..-.+... .+... . +..++... ...+ +.+..++|
T Consensus         1 V~ap~~~V~~~i~D~e-~~~~~~p-~~~~v~vl~~~~~--~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~-~~~~~~~g   72 (130)
T PF03364_consen    1 VNAPPEEVWSVITDYE-NYPRFFP-PVKEVRVLERDGD--GMRARWEVKFGGIKR-S-WTSRVTED-PPER-IRFEQISG   72 (130)
T ss_dssp             ESS-HHHHHHHHTTGG-GHHHHCT-TEEEEEEEEEECC--EEEEEEEECTTTTCE-E-EEEEEEEE-CTTT-EEEESSET
T ss_pred             CCCCHHHHHHHHHHHH-HHHHhCC-CCceEEEEEeCCC--eEEEEEEEecCCEEE-E-EEEEEEEE-Eeee-eeeeecCC
Confidence            6899999999999996 6999999 7889999987542  333345555 44333 2 45665533 4444 88888777


Q ss_pred             CcccceeEEEEEEEEeeCCC---CeEEEEEEEEEeCCC
Q 031700           93 DLLKYYKAFKGIVSVNPKGE---GSLVKWACEFEKASD  127 (154)
Q Consensus        93 ~~~~~~~~~~~t~~v~~~~~---~s~v~Wt~~~e~~~~  127 (154)
                      +    ++.+.+++++.|.++   ||.++++.+|+....
T Consensus        73 ~----~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~  106 (130)
T PF03364_consen   73 P----FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPP  106 (130)
T ss_dssp             T----EEEEEEEEEEEEETTECCEEEEEEEEEEEEETS
T ss_pred             C----chhcEEEEEEEECCCCcCCCEEEEEEEEEEecC
Confidence            5    589999999999965   888888888887554

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.98  E-value=3.7e-08  Score=71.05  Aligned_cols=113  Identities=16%  Similarity=0.181  Sum_probs=72.4

Q ss_pred             EEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCC-ceeee-eeEEEEeeeCCCcEEE
Q 031700            9 EVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS-PIVKV-STEKIENVDEANKVVT   86 (154)
Q Consensus         9 ~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~-~~~~~-~kErl~~~D~~~~~~~   86 (154)
                      +.+++|++|+++||+++.|.. .++.|.| .+++.+.+++.  .  ..-.+++.-|. ... + .+=++..++.+.+.+.
T Consensus         2 ~~~~~v~a~pe~vw~~l~D~~-~~~~~~p-g~~~~~~~~~~--~--~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~   74 (146)
T cd07823           2 ENEFTVPAPPDRVWALLLDIE-RVAPCLP-GASLTEVEGDD--E--YKGTVKVKLGPISAS-FKGTARLLEDDEAARRAV   74 (146)
T ss_pred             CceEEecCCHHHHHHHhcCHH-HHHhcCC-CceeccccCCC--e--EEEEEEEEEccEEEE-EEEEEEEEeccCCCcEEE
Confidence            468899999999999999996 6999999 57777754322  1  22233433221 111 1 1224555554788888


Q ss_pred             EEEEecCc-ccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCC
Q 031700           87 YKVIDGDL-LKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDD  128 (154)
Q Consensus        87 Y~~ieg~~-~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~  128 (154)
                      +..-..+. ...--....++++.|.+++|+|+|+.+++..+..
T Consensus        75 ~~~~g~~~~~~g~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~l  117 (146)
T cd07823          75 LEATGKDARGQGTAEATVTLRLSPAGGGTRVTVDTDLALTGKL  117 (146)
T ss_pred             EEEEEecCCCcceEEEEEEEEEEecCCcEEEEEEEEEEEeeEh
Confidence            77543111 1111145667888887678999999999877653

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.88  E-value=1e-07  Score=67.88  Aligned_cols=136  Identities=13%  Similarity=0.199  Sum_probs=83.8

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      .++.++.|+||+++||+++.|.. .+++|.|...  .....|.    |..-.+.+.++...  ...-++..+ +.++.+.
T Consensus         2 ~i~~~i~i~a~~e~Vw~~~td~~-~~~~W~~~~~--~~~~~~~----~~~g~~~~~~~~~~--~~~~~i~~~-~p~~~l~   71 (145)
T cd08898           2 RIERTILIDAPRERVWRALTDPE-HFGQWFGVKL--GPFVVGE----GATGEITYPGYEHG--VFPVTVVEV-DPPRRFS   71 (145)
T ss_pred             eeEEEEEecCCHHHHHHHhcChh-hhhhcccccC--CCcccCC----cceeEEecCCCCcc--ceEEEEEEe-CCCcEEE
Confidence            57899999999999999999996 7999998532  1111121    12223444432111  144577777 4888889


Q ss_pred             EEEEecCc-----ccceeEEEEEEEEeeCCCCeEEEEEEE-EEeCCCCCC--ChhhHHHHHHHHHHHHHHHHhh
Q 031700           87 YKVIDGDL-----LKYYKAFKGIVSVNPKGEGSLVKWACE-FEKASDDVP--DPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        87 Y~~ieg~~-----~~~~~~~~~t~~v~~~~~~s~v~Wt~~-~e~~~~~~~--~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      |+......     ...-.....++++.+.+++|+|+++-. |...++...  ......+.-..++..|++||.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le~  145 (145)
T cd08898          72 FRWHPPAIDPGEDYSAEPSTLVEFTLEPIAGGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVEA  145 (145)
T ss_pred             EEecCCCcccccccCCCCceEEEEEEEecCCcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence            98654320     001123457888999888899999876 432221110  1112234456888999998853

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.84  E-value=1.3e-07  Score=69.22  Aligned_cols=127  Identities=12%  Similarity=0.153  Sum_probs=86.8

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      .++.++.|++|+++||+++.|.. .+++|.|. .      .++. .+|...++++......  ....++.++| +++.+.
T Consensus        12 ~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~~-~------~~~~-~~G~~~~~~~~~~~~~--~~~~~v~e~~-p~~~l~   79 (157)
T cd08899          12 TLRFERLLPAPIEDVWAALTDPE-RLARWFAP-G------TGDL-RVGGRVEFVMDDEEGP--NATGTILACE-PPRLLA   79 (157)
T ss_pred             EEEEEEecCCCHHHHHHHHcCHH-HHHhhcCC-C------CCCc-ccCceEEEEecCCCCC--ccceEEEEEc-CCcEEE
Confidence            58899999999999999999996 79999983 2      1222 4666666666531111  1567778775 678899


Q ss_pred             EEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhC
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA  153 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  153 (154)
                      |+...++.     ....++.+.+.++||+++.+.++.+...   ......+.-..++..|.+||.+.
T Consensus        80 ~~~~~~~~-----~~~~~~~l~~~~~gT~v~~~~~~~~~~~---~~~~~~~GW~~~L~~Lk~~~e~~  138 (157)
T cd08899          80 FTWGEGGG-----ESEVRFELAPEGDGTRLTLTHRLLDERF---GAGAVGAGWHLCLDVLEAALEGG  138 (157)
T ss_pred             EEecCCCC-----CceEEEEEEEcCCCEEEEEEEeccCchh---hhhhhcccHHHHHHHHHHHHcCC
Confidence            98865441     2245777887777899999888875541   12233344567778888877543

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.79  E-value=3.6e-07  Score=64.24  Aligned_cols=133  Identities=10%  Similarity=0.049  Sum_probs=83.2

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      +++.++.|+||+++||+++.|.. .+++|.++..     .+++. .+|..-.+...+....  .+.=++.+++ +++.+.
T Consensus         1 ~~~~~~~i~ap~e~Vw~~~td~~-~~~~W~~~~~-----~~~~~-~~G~~~~~~~~~~~~~--~~~~~v~~~~-~~~~l~   70 (136)
T cd08893           1 KFVYVTYIRATPEKVWQALTDPE-FTRQYWGGTT-----VESDW-KVGSAFEYRRGDDGTV--DVEGEVLESD-PPRRLV   70 (136)
T ss_pred             CeEEEEEecCCHHHHHHHHcCch-hhhheecccc-----cccCC-cCCCeEEEEeCCCccc--ccceEEEEec-CCCeEE
Confidence            47889999999999999999996 7999998522     13333 4555444544431111  1345666675 777788


Q ss_pred             EEEEecCcc--cceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700           87 YKVIDGDLL--KYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        87 Y~~ieg~~~--~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~  151 (154)
                      |+...+...  ..-.....++.+.+.+++|+++.+.+..+.+.  ............+++.|+++|-
T Consensus        71 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~t~l~~~~~~~~~~~--~~~~~~~~gw~~~l~~Lk~~~e  135 (136)
T cd08893          71 HTWRAVWDPEMAAEPPSRVTFEIEPVGDVVKLTVTHDGFPPGS--PTLEGVSGGWPAILSSLKTLLE  135 (136)
T ss_pred             EEEecCCCcccCCCCCEEEEEEEEecCCcEEEEEEecCCCCch--hHHHhhhcCHHHHHHHHHHHhc
Confidence            876543321  11224556788888877888877766543321  1122334456678888888873

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.71  E-value=3.2e-06  Score=60.68  Aligned_cols=138  Identities=12%  Similarity=0.086  Sum_probs=83.1

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCc-ccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCCcE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSH-DYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~-~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      ++.+..+++|+++||+++.|-. .+.+|+.. .--.+...+.+. .+|..-.+.+.  +|....  ..=++.++| ++++
T Consensus         2 ~~i~r~~~ap~e~Vw~a~tdp~-~l~~W~~~~~~~~~~~~~~d~-~~Gg~~~~~~~~~~g~~~~--~~g~~~~~~-p~~~   76 (143)
T cd08900           2 FTLERTYPAPPERVFAAWSDPA-ARARWFVPSPDWTVLEDEFDF-RVGGREVSRGGPKGGPEIT--VEARYHDIV-PDER   76 (143)
T ss_pred             EEEEEEeCCCHHHHHHHhcCHH-HHHhcCCCCCCCceeeeEEec-CCCCEEEEEEECCCCCEEe--eeEEEEEec-CCce
Confidence            5667889999999999999985 68899853 111222223332 34444444443  454322  455777785 7778


Q ss_pred             EEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700           85 VTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~  151 (154)
                      |.|+...............++.+.+.+++|+++.+-..-..++. .......+--..++..|++||.
T Consensus        77 l~~t~~~~~~~~~~~~s~v~~~l~~~~~gT~l~~~~~~~~~~~~-~~~~~~~~GW~~~l~~L~~~l~  142 (143)
T cd08900          77 IVYTYTMHIGGTLLSASLATVEFAPEGGGTRLTLTEQGAFLDGD-DDPAGREQGTAALLDNLAAELE  142 (143)
T ss_pred             EEEEEeeccCCccccceEEEEEEEECCCCEEEEEEEEEeccccc-chhhhHHHHHHHHHHHHHHHHh
Confidence            88775321110111123468888888888999988776322221 1123344556778889988874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.70  E-value=4.8e-07  Score=64.71  Aligned_cols=133  Identities=13%  Similarity=0.199  Sum_probs=80.8

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccC-cccceEEEEcCCCCCCCcEEEEEE-c-CCCceeeeeeEEEEeeeCCCcE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFS-HDYKSIQVLEGDGKAPGSVRLITY-A-DGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p-~~v~s~~~~eG~~~~~GsvR~~~~-~-~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      ++.+..|++|+++||+++.+-. .+.+|++ +.+.... .+.+. .+|..-.+.+ . +|....  ..-++.+++ ++++
T Consensus         2 l~~~r~i~ap~e~Vw~a~t~p~-~l~~W~~p~~~~~~~-~~~d~-~~GG~~~~~~~~~~g~~~~--~~g~v~e~~-p~~~   75 (139)
T cd08894           2 IVTTRVIDAPRDLVFAAWTDPE-HLAQWWGPEGFTNTT-HEFDL-RPGGRWRFVMHGPDGTDYP--NRIVFLEIE-PPER   75 (139)
T ss_pred             EEEEEEeCCCHHHHHHHhCCHH-HHhhccCcCCCcceE-EEEEe-cCCCEEEEEEECCCCCEec--ceEEEEEEc-CCCE
Confidence            5678899999999999999985 6788863 3332211 22232 3444434433 2 454321  345778884 7888


Q ss_pred             EEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCC-CCChhhHHHHHHHHHHHHHHHHh
Q 031700           85 VTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDD-VPDPSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~-~~~~~~~~~~~~~~~k~ie~~l~  151 (154)
                      |.|+...++.     ....++++.|.+++|+++.+..|.+...- ........+....++..|++||.
T Consensus        76 l~~t~~~~~~-----~~~v~~~~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~  138 (139)
T cd08894          76 IVYDHGSGPP-----RFRLTVTFEEQGGKTRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYLA  138 (139)
T ss_pred             EEEEeccCCC-----cEEEEEEEEECCCCEEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence            9998754421     23468888888888999988765321100 00001122345678888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=98.67  E-value=5.5e-07  Score=65.45  Aligned_cols=137  Identities=16%  Similarity=0.251  Sum_probs=90.0

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcC-CCceeeeeeEEEEeeeCCCcEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD-GSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~-G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      .++.+..|++|+++||+.+.|.. .+..-+| .++|++. +|+.  --++-++.+.. ...+.  .+=++..+|++.+++
T Consensus         2 ~~~G~f~V~~p~e~Vw~~L~dpe-~~a~ciP-G~qs~e~-~g~e--~~~~v~l~ig~l~~~~~--g~~~~~~v~~~~~~~   74 (146)
T COG3427           2 DYEGTFRVAAPPEAVWEFLNDPE-QVAACIP-GVQSVET-NGDE--YTAKVKLKIGPLKGTFS--GRVRFVNVDEPPRSI   74 (146)
T ss_pred             cccceEEecCCHHHHHHHhcCHH-HHHhhcC-Ccceeee-cCCe--EEEEEEEeecceeEEEE--EEEEEccccCCCcEE
Confidence            46778999999999999999996 6889999 6999984 5652  11122222221 11221  345667778899999


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCC-hhhHH----HHHHHHHHHHHHHHh
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPD-PSVIK----DFALKNFQEVDDYIL  151 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~-~~~~~----~~~~~~~k~ie~~l~  151 (154)
                      +.+.-.|. +..+-...+.+++.|.+++|++.|.++-+-.+-...- +..+.    .....+++.|.++|.
T Consensus        75 ~i~g~G~~-~~g~~~~~~~v~l~~~g~gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~  144 (146)
T COG3427          75 TINGSGGG-AAGFADGTVDVQLEPSGEGTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELA  144 (146)
T ss_pred             EEEeeccc-ccceeeeeeEEEEEEcCCCcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88876533 3346677788999999878999999988765532111 22222    334456666666654

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.67  E-value=1.9e-06  Score=61.10  Aligned_cols=128  Identities=20%  Similarity=0.212  Sum_probs=82.1

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccce--EEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCC
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKS--IQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s--~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~   82 (154)
                      +++.++.|+||+++||+++.|-. .+.+|++. ...  +...+.+. .+|..-.+.+.  +|... ..+.-++.++ +++
T Consensus         1 ~~~~~~~~~ap~e~Vw~a~td~e-~~~~W~~~-~~~~~~~~~~~d~-~~GG~~~~~~~~~~g~~~-~~~~g~~~ei-~p~   75 (133)
T cd08897           1 KITVETTVDAPIEKVWEAWTTPE-HITKWNFA-SDDWHCPSAENDL-RVGGKFSYRMEAKDGSMG-FDFEGTYTEV-EPH   75 (133)
T ss_pred             CEEEEEEeCCCHHHHHHHhCCHH-HHhhCCCC-CCCcccceeeecC-CcCCEEEEEEEcCCCCcc-cccceEEEEE-CCC
Confidence            57889999999999999999985 78999642 111  11122333 45555555442  44320 0134566778 488


Q ss_pred             cEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700           83 KVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~  151 (154)
                      ++|.|+..++        ...++.+.|.++||+++-+  +.+.+..  ..+...+--..++..|++||.
T Consensus        76 ~~l~~~~~~~--------~~v~~~l~~~~~gT~l~l~--~~~~~~~--~~~~~~~GW~~~l~~L~~~le  132 (133)
T cd08897          76 KLIEYTMEDG--------REVEVEFTEEGDGTKVVET--FDAENEN--PVEMQRQGWQAILDNFKKYVE  132 (133)
T ss_pred             CEEEEEcCCC--------CEEEEEEEECCCCEEEEEE--ECCCCCC--cHHHHHHHHHHHHHHHHHHhh
Confidence            8899986432        2468889998888998865  4443221  233444556788899999884

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.67  E-value=3.5e-06  Score=60.72  Aligned_cols=134  Identities=12%  Similarity=0.062  Sum_probs=82.5

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccC-cccceEEEEcCCCCCCCcEEEEEE--cC-------CCceeeeeeEEEEe
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFS-HDYKSIQVLEGDGKAPGSVRLITY--AD-------GSPIVKVSTEKIEN   77 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p-~~v~s~~~~eG~~~~~GsvR~~~~--~~-------G~~~~~~~kErl~~   77 (154)
                      ++.+..|+||+++||+++.|.. .+.+|.+ +.+ .+...+.+. .+|..-.+.+  .+       |...  .+.=++.+
T Consensus         2 ~~~~r~i~ap~e~Vw~a~td~~-~~~~W~~p~~~-~~~~~~~d~-~~GG~~~~~~~~~~~~~g~~~g~~~--~~~g~v~~   76 (146)
T cd08895           2 DRLHRVIAAPPERVYRAFLDPD-ALAKWLPPDGM-TGTVHEFDA-REGGGFRMSLTYFDPSVGKTTGNTD--VFGGRFLE   76 (146)
T ss_pred             EEEEEEECCCHHHHHHHHcCHH-HHhhcCCCCCe-EeEEEEEec-ccCCeEEEEEEcCCccccccCCcEe--eeEEEEEE
Confidence            5678889999999999999996 6889875 222 222222332 3343333333  23       2222  13446777


Q ss_pred             eeCCCcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700           78 VDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        78 ~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~  151 (154)
                      ++ .+++|.|+..-.+.... .....++.+.+.+++|+++++...-+..   .......+--..++..|++||-
T Consensus        77 v~-p~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~T~lt~~~~~~~~~---~~~~~~~~GW~~~l~~L~~~le  145 (146)
T cd08895          77 LV-PNERIVYTDVFDDPSLS-GEMTMTWTLSPVSGGTDVTIVQSGIPDG---IPPEDCELGWQESLANLAALVE  145 (146)
T ss_pred             Ec-CCCEEEEEEEecCCCCC-ceEEEEEEEEecCCCEEEEEEEeCCCch---hhhhHHHHHHHHHHHHHHHHhc
Confidence            85 77788888542221111 2336788888888889999988753221   1233445666788899999884

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=98.65  E-value=2.9e-07  Score=68.80  Aligned_cols=107  Identities=17%  Similarity=0.254  Sum_probs=83.8

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCCc
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~~   83 (154)
                      -.++.+++|+.|++.||+..+|+. .+|.|+. ++.|+++.+-.      -.+|+..  .|..+.  ++-+|+ -|..+.
T Consensus        70 i~v~~~V~I~kPae~vy~~W~dLe-~lP~~Mk-hl~SVkVlddk------rSrW~~~ap~g~~v~--Wea~it-~d~~~e  138 (217)
T COG5637          70 IEVEVQVTIDKPAEQVYAYWRDLE-NLPLWMK-HLDSVKVLDDK------RSRWKANAPLGLEVE--WEAEIT-KDIPGE  138 (217)
T ss_pred             eEEEEEEEeCChHHHHHHHHHhhh-hhhHHHH-hhceeeccCCC------ccceeEcCCCCceEE--Eeehhh-ccCCCc
Confidence            368999999999999999999996 6999998 89999987643      1466665  444543  555655 568999


Q ss_pred             EEEEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCC
Q 031700           84 VVTYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASD  127 (154)
Q Consensus        84 ~~~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~  127 (154)
                      .|.+.-++|.-.+    -.+.++|.+. +..|+|+-+++|.+-++
T Consensus       139 ~I~W~Sl~Ga~v~----NsG~VrF~~~pg~~t~V~v~lsY~~Pgg  179 (217)
T COG5637         139 RIQWESLPGARVE----NSGAVRFYDAPGDSTEVKVTLSYRPPGG  179 (217)
T ss_pred             EEeeecCCCCcCC----CCccEEeeeCCCCceEEEEEEEecCCcc
Confidence            9999999995432    1256778777 66789999999998776

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.63  E-value=1.3e-06  Score=62.89  Aligned_cols=136  Identities=11%  Similarity=0.088  Sum_probs=83.4

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCCcEE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      ++.+..+++|+++||+++.+-. .+.+|+...--.+...+.|. .+|..-.+.+.  +|....  +.=++.++| ++++|
T Consensus         2 l~i~r~~~ap~e~Vw~a~Tdpe-~l~~W~~p~~~~~~~~~~d~-r~GG~~~~~~~~~~g~~~~--~~g~~~ei~-p~~~l   76 (142)
T cd07826           2 IVITREFDAPRELVFRAHTDPE-LVKRWWGPRGLTMTVCECDI-RVGGSYRYVHRAPDGEEMG--FHGVYHEVT-PPERI   76 (142)
T ss_pred             EEEEEEECCCHHHHHHHhCCHH-HHhhccCCCCCcceEEEEec-cCCCEEEEEEECCCCCEec--ceEEEEEEc-CCCEE
Confidence            5678889999999999999885 68888764322333334443 45555455543  443321  455677785 67777


Q ss_pred             EEEEE-ecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCC-CCChhhHHHHHHHHHHHHHHHHh
Q 031700           86 TYKVI-DGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDD-VPDPSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        86 ~Y~~i-eg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~-~~~~~~~~~~~~~~~k~ie~~l~  151 (154)
                      .|+-- ++.. .  .....++++.+.+++|+++.+..|...... ...-....+.-..++.+|++||.
T Consensus        77 ~~t~~~~~~~-~--~~s~v~~~l~~~~~gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~  141 (142)
T cd07826          77 VQTEEFEGLP-D--GVALETVTFTELGGRTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELLA  141 (142)
T ss_pred             EEEeEecCCC-C--CceEEEEEEEECCCCEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            77743 2221 1  234568888888888999988666321110 00011223456788999999985

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.59  E-value=1.6e-06  Score=62.56  Aligned_cols=134  Identities=13%  Similarity=0.141  Sum_probs=79.0

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcc-cceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCCcE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHD-YKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~-v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      +..+..|+||+++||+++.+-. .+.+|++.. . ++...+.+. .+|..-++.+.  +|....  ..=++.++| +.++
T Consensus         2 l~i~r~i~a~~e~Vw~a~t~pe-~~~~W~~p~~~-~~~~~~~d~-~~GG~~~~~~~~~~g~~~~--~~g~v~~i~-p~~~   75 (146)
T cd08896           2 LVLSRTIDAPRELVWRAWTEPE-LLKQWFCPKPW-TTEVAELDL-RPGGAFRTVMRGPDGEEFP--NPGCFLEVV-PGER   75 (146)
T ss_pred             eEEEEEeCCCHHHHHHHcCCHH-HHhccCCCCCc-cceEEEEEe-ecCcEEEEEEECCCCCEec--ceEEEEEEe-CCCE
Confidence            5678899999999999999885 678887522 1 111122222 33334344442  454321  456788885 6777


Q ss_pred             EEEEEE--ecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhh-----HHHHHHHHHHHHHHHHh
Q 031700           85 VTYKVI--DGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSV-----IKDFALKNFQEVDDYIL  151 (154)
Q Consensus        85 ~~Y~~i--eg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~-----~~~~~~~~~k~ie~~l~  151 (154)
                      |.|+-.  ++.....-.....++++.+.++||+++.+..+....    ..+.     ..+-...++.+|++||.
T Consensus        76 l~~t~~~~~~~~~~~~~~~~v~~~~~~~~~gT~Ltl~~~~~~~~----~~~~~~~~~~~~GW~~~l~~L~~~l~  145 (146)
T cd08896          76 LVFTDALTPGWRPAEKPFMTAIITFEDEGGGTRYTARARHWTEA----DRKQHEEMGFHDGWGTAADQLAALAE  145 (146)
T ss_pred             EEEEEeecCCcCCCCCCcEEEEEEEEecCCcEEEEEEEEeCCHH----HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            888732  221111001145688899988899998875542110    0111     12446788899999885

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=98.43  E-value=1.3e-05  Score=57.99  Aligned_cols=132  Identities=10%  Similarity=-0.011  Sum_probs=77.2

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcc-------cceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeC
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHD-------YKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE   80 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~-------v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~   80 (154)
                      ++.++.|+||+++||+++.+   .+.+|.+..       ...|++ +-   .+|..-.+...+|...   ..=++.+++ 
T Consensus         2 ~~~~~~i~Ap~e~Vw~a~t~---~l~~W~~p~~~~~~~~~~~~~~-d~---~~GG~~~~~~~~g~~~---~~g~v~~v~-   70 (149)
T cd08891           2 VRKSVTVPAPPERAFEVFTE---GFGAWWPPEYHFVFSPGAEVVF-EP---RAGGRWYEIGEDGTEC---EWGTVLAWE-   70 (149)
T ss_pred             eEEEEEecCCHHHHHHHHHh---chhhccCCCcccccCCCccEEE-cc---cCCcEEEEecCCCcEe---ceEEEEEEc-
Confidence            67899999999999999998   266776422       133332 21   2333323322344432   345777785 


Q ss_pred             CCcEEEEEEEecC-c--ccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCC-CCChh---hHHHHHHHHHHHHHHHHh
Q 031700           81 ANKVVTYKVIDGD-L--LKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDD-VPDPS---VIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        81 ~~~~~~Y~~ieg~-~--~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~-~~~~~---~~~~~~~~~~k~ie~~l~  151 (154)
                      +.++|.|+-.-+. .  .... .-..|+++.+.+ ++|+++.+-..-+.... .....   ...+.-..++.+|++||.
T Consensus        71 p~~~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~  148 (149)
T cd08891          71 PPSRLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE  148 (149)
T ss_pred             CCCEEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence            7777888754221 1  1111 235788999987 89999988776543221 00111   112334567888888874

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.39  E-value=4.3e-05  Score=54.97  Aligned_cols=105  Identities=15%  Similarity=0.306  Sum_probs=63.5

Q ss_pred             EEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCC---ceeeeeeEEEEeeeCCCcE-EE
Q 031700           11 ELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS---PIVKVSTEKIENVDEANKV-VT   86 (154)
Q Consensus        11 ~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~---~~~~~~kErl~~~D~~~~~-~~   86 (154)
                      +.+|++|+++||+++.|.. .+..-+| .+++.+.++ +. --+   .++..=|.   .+.  .+=++..+|++++. +.
T Consensus         2 s~~v~a~~~~vw~~l~D~~-~l~~ciP-G~~~~e~~~-~~-~~~---~~~v~vG~i~~~~~--g~~~~~~~~~~~~~~~~   72 (140)
T PF06240_consen    2 SFEVPAPPEKVWAFLSDPE-NLARCIP-GVESIEKVG-DE-YKG---KVKVKVGPIKGTFD--GEVRITEIDPPESYTLE   72 (140)
T ss_dssp             EEEECS-HHHHHHHHT-HH-HHHHHST-TEEEEEEEC-TE-EEE---EEEEESCCCEEEEE--EEEEEEEEETTTEEEEE
T ss_pred             cEEecCCHHHHHHHhcCHH-HHHhhCC-CcEEeeecC-cE-EEE---EEEEEeccEEEEEE--EEEEEEEcCCCcceEee
Confidence            6789999999999999996 6889999 688888764 31 111   12222221   121  34456667766665 33


Q ss_pred             EEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCC
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASD  127 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~  127 (154)
                      .+.-+..   .-.+..+.+++... +++|+|.|+.+++..+.
T Consensus        73 ~~g~g~~---~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~  111 (140)
T PF06240_consen   73 FEGRGRG---GGSSASANITLSLEDDGGTRVTWSADVEVGGP  111 (140)
T ss_dssp             EEEEECT---CCEEEEEEEEEEECCCTCEEEEEEEEEEEECH
T ss_pred             eeccCCc---cceEEEEEEEEEcCCCCCcEEEEEEEEEEccC
Confidence            3333222   12344455666554 34599999999997765

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=98.24  E-value=0.00016  Score=54.40  Aligned_cols=140  Identities=16%  Similarity=0.204  Sum_probs=83.1

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCce--eeeeeEEEEeeeCCCc
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPI--VKVSTEKIENVDEANK   83 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~--~~~~kErl~~~D~~~~   83 (154)
                      -.+..+..|++|++++|+++.|.. ..|+|.| .+.+++++|-.++ --.+-...+....+.  ..++-.+-...+.++.
T Consensus        41 ~~~k~~~~i~~s~e~v~~vi~d~e-~~~~w~~-~~~~~~vie~~~~-~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~  117 (195)
T cd08876          41 KEFKAVAEVDASIEAFLALLRDTE-SYPQWMP-NCKESRVLKRTDD-NERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG  117 (195)
T ss_pred             EEEEEEEEEeCCHHHHHHHHhhhH-hHHHHHh-hcceEEEeecCCC-CcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence            357888899999999999999996 6899999 7899999885431 123333333311110  0112222112222244


Q ss_pred             EEEEEEEecCc--c--c---ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChh---hHHHHHHHHHHHHHHH
Q 031700           84 VVTYKVIDGDL--L--K---YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPS---VIKDFALKNFQEVDDY  149 (154)
Q Consensus        84 ~~~Y~~ieg~~--~--~---~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~---~~~~~~~~~~k~ie~~  149 (154)
                      .+...+.+.+.  .  .   ....+.+.+.+.|. +++|.|++...++|.+. .|..-   -.+..+..+++++++.
T Consensus       118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~-iP~~lv~~~~~~~~~~~l~~l~~~  193 (195)
T cd08876         118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS-IPGWLANAFAKDAPYNTLENLRKQ  193 (195)
T ss_pred             EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC-CCHHHHHHHHHHHHHHHHHHHHHh
Confidence            55444444321  1  1   24667788889998 56799999999998754 32211   1123344556666554

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=98.19  E-value=3.6e-05  Score=55.77  Aligned_cols=110  Identities=21%  Similarity=0.325  Sum_probs=82.1

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      .++.+.-++.+|+++++++.|.. ..|+++| .-+..++.+.+.  ..-+-.++.. .|-.  .+..-|.. +++..+.|
T Consensus         3 ~~~~s~lv~y~a~~mF~LV~dV~-~YP~FlP-~C~~s~v~~~~~--~~l~A~l~V~~k~i~--e~F~Trv~-~~~~~~~I   75 (146)
T COG2867           3 QIERTALVPYSASQMFDLVNDVE-SYPEFLP-WCSASRVLERNE--RELIAELDVGFKGIR--ETFTTRVT-LKPTARSI   75 (146)
T ss_pred             eeEeeeeccCCHHHHHHHHHHHH-hCchhcc-ccccceEeccCc--ceeEEEEEEEhhhee--eeeeeeee-ecCchhhh
Confidence            57889999999999999999995 7999999 455666677653  3455566665 4432  22444544 45566677


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCC
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASD  127 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~  127 (154)
                      .-.+++|+    ++...++|++.|. +++|.|+..++|+..+.
T Consensus        76 ~~~l~~GP----Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s~  114 (146)
T COG2867          76 DMKLIDGP----FKYLKGGWQFTPLSEDACKVEFFLDFEFKSR  114 (146)
T ss_pred             hhhhhcCC----hhhhcCceEEEECCCCceEEEEEEEeeehhH
Confidence            77777776    4777889999997 68899999999998765

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=98.17  E-value=4.2e-05  Score=52.79  Aligned_cols=122  Identities=11%  Similarity=0.164  Sum_probs=73.4

Q ss_pred             cCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEEEEEEecCc
Q 031700           15 KSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDL   94 (154)
Q Consensus        15 ~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~Y~~ieg~~   94 (154)
                      +||+++||+++.+.. .+.+|.+......+.      .+|..-++.-.+|....  ..=++++++ .++.|.|+.--++.
T Consensus         1 ~ap~e~Vw~a~t~~~-~~~~W~~~~~~~~~~------~~Gg~~~~~~~~g~~~~--~~~~v~~~~-p~~~i~~~~~~~~~   70 (124)
T PF08327_consen    1 DAPPERVWEALTDPE-GLAQWFTTSEAEMDF------RPGGSFRFMDPDGGEFG--FDGTVLEVE-PPERIVFTWRMPDD   70 (124)
T ss_dssp             SSSHHHHHHHHHSHH-HHHHHSEEEEEEEEC------STTEEEEEEETTSEEEE--EEEEEEEEE-TTTEEEEEEEEETS
T ss_pred             CcCHHHHHHHHCCHh-HHhhccCCCcceeee------ecCCEEEEEecCCCCce--eeEEEEEEe-CCEEEEEEEEccCC
Confidence            689999999999985 688993312222222      33443333225665432  344588885 66778888654432


Q ss_pred             ccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhh-HHHHHHHHHHHHHHHH
Q 031700           95 LKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSV-IKDFALKNFQEVDDYI  150 (154)
Q Consensus        95 ~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~-~~~~~~~~~k~ie~~l  150 (154)
                      .. -.....++.+.+.+++|+++-+.+-.+....   ... .......++.+|++||
T Consensus        71 ~~-~~~~~v~~~~~~~~~~T~l~~~~~~~~~~~~---~~~~~~~gw~~~l~~L~~~l  123 (124)
T PF08327_consen   71 PD-GPESRVTFEFEEEGGGTRLTLTHSGFPDDDE---EEEGMEQGWEQMLDRLKAYL  123 (124)
T ss_dssp             SS-CEEEEEEEEEEEETTEEEEEEEEEEEHSHHH---HHHCHHHHHHHHHHHHHHHH
T ss_pred             CC-CCceEEEEEEEEcCCcEEEEEEEEcCCccHH---HHHHHHHHHHHHHHHHHHHh
Confidence            21 2344678888887778988877733322210   111 4455677788888887

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.16  E-value=4.2e-05  Score=54.51  Aligned_cols=122  Identities=10%  Similarity=0.037  Sum_probs=76.3

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEEE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      +..++.|+||+++||+++.+-. .+.+|.+. -.+.++.      +|..-.+.+. .|..    +.=++.++ ++.+++.
T Consensus         2 ~~~~~~i~ap~e~Vw~a~t~p~-~l~~W~~~-~~~~~~~------~Gg~~~~~~~~~~~~----~~g~~~~~-~p~~~l~   68 (136)
T cd08901           2 AKTAMLIRRPVAEVFEAFVDPE-ITTKFWFT-GSSGRLE------EGKTVTWDWEMYGAS----VPVNVLEI-EPNKRIV   68 (136)
T ss_pred             eeEEEEecCCHHHHHHHhcCHH-Hhcccccc-CCCcccc------CCCEEEEEEEccCCc----eEEEEEEE-cCCCEEE
Confidence            5688999999999999999885 68887553 2233432      3334345555 2222    23466777 4778888


Q ss_pred             EEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCCCCChhhH------HHHHHHHHHHHHHHHh
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDDVPDPSVI------KDFALKNFQEVDDYIL  151 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~~~~~~~~------~~~~~~~~k~ie~~l~  151 (154)
                      |+.-.++.   .  -..++++.+.+ ++|+++.+-..-+...    ++..      ......++..|++||.
T Consensus        69 ~~w~~~~~---~--s~v~~~l~~~~~ggT~ltl~~~~~~~~~----~~~~~~~~~~~~GW~~~L~~L~~~le  131 (136)
T cd08901          69 IEWGDPGE---P--TTVEWTFEELDDGRTFVTITESGFPGTD----DEGLKQALGSTEGWTLVLAGLKAYLE  131 (136)
T ss_pred             EEecCCCC---C--EEEEEEEEECCCCcEEEEEEECCCCCCc----HHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            88654321   2  23688888886 7899887755332221    1111      1234577888888875

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=98.10  E-value=0.00025  Score=49.92  Aligned_cols=122  Identities=10%  Similarity=0.061  Sum_probs=74.4

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEEE
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTY   87 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~Y   87 (154)
                      ++.+..|+||+++||+++.+-. .+.+|+. ...+.+...|     |..+   +.+|.     +.=++.+++ +++++.|
T Consensus         2 i~~~r~i~ap~e~Vw~A~T~~e-~l~~W~~-~~~~~d~~~G-----G~~~---~~~g~-----~~g~~~~i~-p~~~l~~   65 (126)
T cd08892           2 ISLTETFQVPAEELYEALTDEE-RVQAFTR-SPAKVDAKVG-----GKFS---LFGGN-----ITGEFVELV-PGKKIVQ   65 (126)
T ss_pred             eEEEEEECCCHHHHHHHHCCHH-HHHhhcC-CCceecCCCC-----CEEE---EeCCc-----eEEEEEEEc-CCCEEEE
Confidence            5678899999999999999885 6889985 2334443333     3333   33453     234566775 6777777


Q ss_pred             EEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHH-HHHHHHHHHH
Q 031700           88 KVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFAL-KNFQEVDDYI  150 (154)
Q Consensus        88 ~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~-~~~k~ie~~l  150 (154)
                      +---.+.... ..-..++.+.+.+++|+++.+-..-+..    ..+...+--. .++..|.++|
T Consensus        66 ~w~~~~~~~~-~~s~v~~~l~~~~~gT~ltl~~~g~~~~----~~~~~~~GW~~~~~~~l~~~~  124 (126)
T cd08892          66 KWRFKSWPEG-HYSTVTLTFTEKDDETELKLTQTGVPAG----EEERTREGWERYYFESIKQTF  124 (126)
T ss_pred             EEEcCCCCCC-CcEEEEEEEEECCCCEEEEEEEECCCCc----hHHHHHhhHHHHHHHHHHHHh
Confidence            6542221111 2234788888887789988877655432    1233333333 3677777765

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=0.00022  Score=51.92  Aligned_cols=137  Identities=11%  Similarity=0.094  Sum_probs=78.7

Q ss_pred             cceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            5 GGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         5 ~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      ...++.+..|++|+++||+++.|-. ++.+|+...-.+.++.-|    .+....+...+|...  ...-++.++ ..+++
T Consensus         7 ~~~~~~er~i~aP~e~Vf~A~Tdpe-~l~~W~~~~~~~~d~r~g----g~~~~~~~~~~g~~~--~~~~~~~~v-~p~~r   78 (149)
T COG3832           7 DRTLEIERLIDAPPEKVFEALTDPE-LLARWFMPGGAEFDARTG----GGERVRFRGPDGPVH--SFEGEYLEV-VPPER   78 (149)
T ss_pred             CceEEEEEeecCCHHHHHHHhcCHH-HHHhhcCCCCCccceecC----CceEEeeecCCCCee--ecceEEEEE-cCCcE
Confidence            4579999999999999999999985 799998621111121112    234445555565431  256677778 47787


Q ss_pred             EEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChh---hH--HHHHHHHHHHHHHHHh
Q 031700           85 VTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPS---VI--KDFALKNFQEVDDYIL  151 (154)
Q Consensus        85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~---~~--~~~~~~~~k~ie~~l~  151 (154)
                      |.|+-.-.+.......-..++++.+.+.|.  .++..........+...   ..  .+...+++.+++++|.
T Consensus        79 Iv~tw~~~~~~~~~~~~~v~~~l~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~  148 (149)
T COG3832          79 IVFTWDFDEDGEPFLKSLVTITLTPEDDGG--TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE  148 (149)
T ss_pred             EEEEeccCCCCCcccCceEEEEEEEecCCC--cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence            877765543322222334677777763221  22222222222111111   11  4557788888888874

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=97.36  E-value=0.0058  Score=43.44  Aligned_cols=119  Identities=9%  Similarity=0.053  Sum_probs=66.6

Q ss_pred             EcCCHHHHHHHHhccCCCCccc-cCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEEEEEEec
Q 031700           14 VKSSADKFWGSIRDSTTLFPKA-FSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDG   92 (154)
Q Consensus        14 i~a~~~~vW~~~~d~~~~l~~~-~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~Y~~ieg   92 (154)
                      ++||+++||+++.|-. .+.+| .+ ....+++      .+|..-+  +..|.     +.=++.++| ++++|.|+---.
T Consensus         1 f~ap~e~Vw~A~Tdp~-~l~~w~~~-~~~~~d~------~~GG~f~--~~~~~-----~~G~~~ev~-pp~rlv~tw~~~   64 (132)
T PTZ00220          1 FYVPPEVLYNAFLDAY-TLTRLSLG-SPAEMDA------KVGGKFS--LFNGS-----VEGEFTELE-KPKKIVQKWRFR   64 (132)
T ss_pred             CCCCHHHHHHHHcCHH-HHHHHhcC-CCccccC------CcCCEEE--EecCc-----eEEEEEEEc-CCCEEEEEEecC
Confidence            4799999999999885 67788 43 2222232      2333322  22332     234666675 666677665322


Q ss_pred             Ccc-cceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCC--C-CChhhHHHHHHH-HHHHHHHHH
Q 031700           93 DLL-KYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDD--V-PDPSVIKDFALK-NFQEVDDYI  150 (154)
Q Consensus        93 ~~~-~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~--~-~~~~~~~~~~~~-~~k~ie~~l  150 (154)
                      +.. ..++  ..|+++.+. +++|+++.+..--+..+.  . ...+...+--.+ ++..|++||
T Consensus        65 ~~~~~~~s--~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l  126 (132)
T PTZ00220         65 DWEEDVYS--KVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL  126 (132)
T ss_pred             CCCCCCce--EEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence            211 1122  478899987 468998888773322221  0 112233344455 588888876

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=97.27  E-value=0.037  Score=42.57  Aligned_cols=120  Identities=12%  Similarity=0.095  Sum_probs=75.1

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc---CC--CceeeeeeEEEEeeeCCC
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA---DG--SPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~---~G--~~~~~~~kErl~~~D~~~   82 (154)
                      +..+.+|++|+++||+++.|.. ..++|.+ .++++++++--+... .+-++.+.   ..  ... .++--+-...++..
T Consensus        47 ~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~-~~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~R-DfV~l~~~~~~~~~  122 (205)
T cd08874          47 FLGAGVIKAPLATVWKAVKDPR-TRFLYDT-MIKTARIHKTFTEDI-CLVYLVHETPLCLLKQPR-DFCCLQVEAKEGEL  122 (205)
T ss_pred             EEEEEEEcCCHHHHHHHHhCcc-hhhhhHH-hhhheeeeeecCCCe-EEEEEEecCCCCCCCCCC-eEEEEEEEEECCCc
Confidence            5567889999999999999996 6899999 899999987432222 33333332   22  210 11222222222333


Q ss_pred             cEEEEEEEec-Cc--cc----ceeEEEEEEEEeeC---C-CCeEEEEEEEEEeCCCCCCC
Q 031700           83 KVVTYKVIDG-DL--LK----YYKAFKGIVSVNPK---G-EGSLVKWACEFEKASDDVPD  131 (154)
Q Consensus        83 ~~~~Y~~ieg-~~--~~----~~~~~~~t~~v~~~---~-~~s~v~Wt~~~e~~~~~~~~  131 (154)
                      ..+.-.-++- ..  ..    ....+.+-+.+.|.   + +.|.|++.+..+|.++..|.
T Consensus       123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~  182 (205)
T cd08874         123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPA  182 (205)
T ss_pred             EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCH
Confidence            3333322322 11  11    25678888999998   5 46999999999999766654

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=97.13  E-value=0.021  Score=41.82  Aligned_cols=70  Identities=14%  Similarity=0.254  Sum_probs=43.1

Q ss_pred             EEEEEEEcCC--------HHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeee
Q 031700            8 LEVELEVKSS--------ADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVD   79 (154)
Q Consensus         8 ~~~~~~i~a~--------~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D   79 (154)
                      ++..+.||-|        .++||+-+..-.+.-..+.| .|.+|++++-.  +..-.|.++|  |...   ++|++. +.
T Consensus         2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~--~~~~~R~v~f--g~~~---v~E~v~-~~   72 (149)
T PF08982_consen    2 FEHTVPINPPGASLPVLTREQLWRGLVLKARNPQLFVP-GIDSCEVLSES--DTVLTREVTF--GGAT---VRERVT-LY   72 (149)
T ss_dssp             EEEEEE------------HHHHHHHHHHHHH-GGGT-T-T--EEEEEEE---SSEEEEEEEE--TTEE---EEEEEE-EE
T ss_pred             ccEEEecCCCcccCCccCHHHHHHHHHHHHhChhhCcc-ccCeEEEEecC--CCeEEEEEEE--CCcE---EEEEEE-Ee
Confidence            4556666554        45799998544444557888 89999999754  4578899999  3322   899987 43


Q ss_pred             CCCcEEEE
Q 031700           80 EANKVVTY   87 (154)
Q Consensus        80 ~~~~~~~Y   87 (154)
                       +..++.|
T Consensus        73 -~~~~V~f   79 (149)
T PF08982_consen   73 -PPERVDF   79 (149)
T ss_dssp             -TTTEEEE
T ss_pred             -CCcEEEE
Confidence             5667888

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=97.08  E-value=0.096  Score=41.17  Aligned_cols=142  Identities=11%  Similarity=0.105  Sum_probs=88.8

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-C--CCceeeeeeEEEEe--eeCCC
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-D--GSPIVKVSTEKIEN--VDEAN   82 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~--G~~~~~~~kErl~~--~D~~~   82 (154)
                      +..+..+++|++++++++.|.. ..++|.+ ...++++++--+...+ +-++.++ +  -+.. .++--+-..  .++.+
T Consensus        79 fk~e~~vd~s~~~v~dlL~D~~-~R~~WD~-~~~e~evI~~id~d~~-iyy~~~p~PwPvk~R-DfV~~~s~~~~~~~~~  154 (235)
T cd08873          79 FCVELKVQTCASDAFDLLSDPF-KRPEWDP-HGRSCEEVKRVGEDDG-IYHTTMPSLTSEKPN-DFVLLVSRRKPATDGD  154 (235)
T ss_pred             EEEEEEecCCHHHHHHHHhCcc-hhhhhhh-cccEEEEEEEeCCCcE-EEEEEcCCCCCCCCc-eEEEEEEEEeccCCCC
Confidence            6788889999999999999996 6899998 7889999873221223 3334333 1  1210 112111111  12212


Q ss_pred             -cEEEEEEEe-cCc-c-c---ceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCC--CCChhhHHHHHHHHHHHHHHHHhh
Q 031700           83 -KVVTYKVID-GDL-L-K---YYKAFKGIVSVNPKG-EGSLVKWACEFEKASDD--VPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        83 -~~~~Y~~ie-g~~-~-~---~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~--~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                       ..+...-+. ... . .   ....+.+-+.+.|.+ ++|.|++....+|.--.  +.+...+-..+...|+..+.||..
T Consensus       155 ~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (235)
T cd08873         155 PYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFLVT  234 (235)
T ss_pred             eEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHhcc
Confidence             333333333 211 1 1   367888999999994 67999999998877432  223445556677788888888875


Q ss_pred             C
Q 031700          153 A  153 (154)
Q Consensus       153 ~  153 (154)
                      |
T Consensus       235 ~  235 (235)
T cd08873         235 N  235 (235)
T ss_pred             C
Confidence            4

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=97.02  E-value=0.067  Score=38.83  Aligned_cols=118  Identities=13%  Similarity=0.252  Sum_probs=70.3

Q ss_pred             EEEEEEEcC-------CHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeC
Q 031700            8 LEVELEVKS-------SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE   80 (154)
Q Consensus         8 ~~~~~~i~a-------~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~   80 (154)
                      ++..++||-       ..+++|.-+---...-..+.| .+.+|++++-++  .--.|.++|+.+ .    ++|++. + .
T Consensus         2 ~~~tvpIN~p~~~p~LTr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~~--~~l~Rel~f~~~-~----v~e~vt-~-~   71 (141)
T cd08863           2 FEHTVPINDPGNIPTLTRAQLWRGLVLRAREPQLFVP-GLDRCEVLSESG--TVLERELTFGPA-K----IRETVT-L-E   71 (141)
T ss_pred             ccEEEecCCCCCCCccCHHHHHhHHHhhhCCchhccc-ccceEEEEecCC--CEEEEEEEECCc-e----EEEEEE-e-c
Confidence            344555554       357999998433344456778 799999998653  246699999764 2    789977 5 3


Q ss_pred             CCcEEEEEEEe-cCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCCh--hhHHHHHHHHHH
Q 031700           81 ANKVVTYKVID-GDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDP--SVIKDFALKNFQ  144 (154)
Q Consensus        81 ~~~~~~Y~~ie-g~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~--~~~~~~~~~~~k  144 (154)
                      ...++.|.+-. |+      +.  ++.+....+| .+-.++.|+....+..++  ..+.+...++.+
T Consensus        72 ~~~~v~f~~~~~g~------~l--~~~iee~~~g-~L~lrf~ye~~~p~~~~~e~~~~~~~~~~a~~  129 (141)
T cd08863          72 PPSRVHFLQADAGG------TL--TNTIEEPEDG-ALYLRFVYETTLPEVAEEEAKAYQEIVKQAYK  129 (141)
T ss_pred             CCcEEEEEecCCCC------eE--EEEeccCCCC-cEEEEEEEEecCCCcCchHHHHHHHHHHHHHH
Confidence            67788888876 32      21  2222221223 356677777665543322  244444444443

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=96.64  E-value=0.16  Score=37.20  Aligned_cols=111  Identities=19%  Similarity=0.313  Sum_probs=64.5

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCC--ccccCc---ccceEEEEcCCCCCCCcEEEEE-Ec-CC----------Cceeee
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLF--PKAFSH---DYKSIQVLEGDGKAPGSVRLIT-YA-DG----------SPIVKV   70 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l--~~~~p~---~v~s~~~~eG~~~~~GsvR~~~-~~-~G----------~~~~~~   70 (154)
                      ++.++++++|+++||+++.|-.-..  -+-+..   .+.+++ .+|+  + -+++... ++ +.          ....  
T Consensus         1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~-~~~~--g-~~v~~~~~v~~~~lP~~~~k~v~~~l~--   74 (159)
T PF10698_consen    1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFE-VDGD--G-VRVTVRQTVPADKLPSAARKFVGGDLR--   74 (159)
T ss_pred             CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEE-EcCC--e-EEEEEEEecChhhCCHHHHHhcCCCeE--
Confidence            4678899999999999997542111  111221   233333 2233  2 1111111 11 11          1111  


Q ss_pred             eeEEEEee---eCCCcEEEEEEEe-cCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCC
Q 031700           71 STEKIENV---DEANKVVTYKVID-GDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDV  129 (154)
Q Consensus        71 ~kErl~~~---D~~~~~~~Y~~ie-g~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~  129 (154)
                      + +|-+.+   ++..++-+|++-- |.+    -+..+++.+.|.+++|++.++.+.+..-+..
T Consensus        75 v-~~~e~w~~~~~g~~~g~~~~~~~G~P----~~~~G~~~L~~~~~gt~~~~~g~v~v~VPlv  132 (159)
T PF10698_consen   75 V-TRTETWTPLDDGRRTGTFTVSIPGAP----VSISGTMRLRPDGGGTRLTVEGEVKVKVPLV  132 (159)
T ss_pred             E-EEEEEEecCCCCeEEEEEEEEecCce----EEEEEEEEEecCCCCEEEEEEEEEEEEEccc
Confidence            2 233445   5677777777543 333    4788999999988899999999999887643

The function is not known.

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=96.46  E-value=0.2  Score=38.39  Aligned_cols=142  Identities=10%  Similarity=0.118  Sum_probs=80.1

Q ss_pred             eEEEEEEEcCCHHHHH-HHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCce--eeeeeEEEEeeeCCC
Q 031700            7 KLEVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPI--VKVSTEKIENVDEAN   82 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW-~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~--~~~~kErl~~~D~~~   82 (154)
                      -+..+..+++|+++++ .++-|.. ..++|.+ .+.++++++--+...=-++.+..+ ++...  ..++--|....++.+
T Consensus        50 ~~k~e~~i~~~~~~l~~~l~~d~e-~~~~W~~-~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~  127 (209)
T cd08905          50 VFRLEVVVDQPLDNLYSELVDRME-QMGEWNP-NVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST  127 (209)
T ss_pred             EEEEEEEecCCHHHHHHHHHhchh-hhceecc-cchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence            3778899999999999 5566775 6899998 788888776421011112322222 22110  011222222223333


Q ss_pred             cEEEEEEEecCccc------ceeEEEEEEEEeeC-C--CCeEEEEEEEEEeCCCCCCC--hhhH-HHHHHHHHHHHHHHH
Q 031700           83 KVVTYKVIDGDLLK------YYKAFKGIVSVNPK-G--EGSLVKWACEFEKASDDVPD--PSVI-KDFALKNFQEVDDYI  150 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~------~~~~~~~t~~v~~~-~--~~s~v~Wt~~~e~~~~~~~~--~~~~-~~~~~~~~k~ie~~l  150 (154)
                      ..+.....+-+..+      ....+.+-+.+.|. +  ++|.++|.+..+|.+.. |.  -... .+.....++.|.++|
T Consensus       128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i-P~~lvN~~~~~~~~~~~~~Lr~~~  206 (209)
T cd08905         128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL-PKSIINQVLSQTQVDFANHLRQRM  206 (209)
T ss_pred             EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC-CHHHHHHHhHHhHHHHHHHHHHHH
Confidence            33222222222221      25667788889997 3  57999999999998873 32  1122 244456677777766


Q ss_pred             h
Q 031700          151 L  151 (154)
Q Consensus       151 ~  151 (154)
                      .
T Consensus       207 ~  207 (209)
T cd08905         207 A  207 (209)
T ss_pred             h
Confidence            4

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.22  Score=35.90  Aligned_cols=111  Identities=11%  Similarity=0.145  Sum_probs=77.8

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-------CCCceeeeeeEEEEe-
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-------DGSPIVKVSTEKIEN-   77 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-------~G~~~~~~~kErl~~-   77 (154)
                      |++.....|++|.|-||+..+.-+ .|..+.|..+  +.+-+|+  .++..-++.+.       .|..    ++-|+++ 
T Consensus         2 ~tF~~~~~i~aP~E~VWafhsrpd-~lq~LTppw~--VV~p~g~--eitqgtri~m~l~pfglp~~~t----W~Arhte~   72 (153)
T COG4276           2 GTFVYRTTITAPHEMVWAFHSRPD-ALQRLTPPWI--VVLPLGS--EITQGTRIAMGLTPFGLPAGLT----WVARHTES   72 (153)
T ss_pred             cceEEeeEecCCHHHHhhhhcCcc-HHHhcCCCcE--EeccCCC--cccceeeeeecceeecCCCCce----EEEEeeec
Confidence            478888999999999999998776 4667777433  3333553  34444444432       2323    5667776 


Q ss_pred             -eeCCCcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCC
Q 031700           78 -VDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDD  128 (154)
Q Consensus        78 -~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~  128 (154)
                       +| ...+++=.++.|+....  +..-+-++.+.+++|.+.=++.|++..+.
T Consensus        73 ~~d-~~~~FtDv~i~gPfp~~--~WrHtH~F~~egg~TvliD~Vsye~p~g~  121 (153)
T COG4276          73 GFD-NGSRFTDVCITGPFPAL--NWRHTHNFVDEGGGTVLIDSVSYELPAGT  121 (153)
T ss_pred             ccC-CcceeeeeeecCCccce--eeEEEeeeecCCCcEEEEeeEEeeccCcc
Confidence             64 56677888888876332  45568888888899999999999988774

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=95.88  E-value=0.5  Score=36.12  Aligned_cols=136  Identities=15%  Similarity=0.163  Sum_probs=79.9

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc---CCCceeeeeeEEE------Ee
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA---DGSPIVKVSTEKI------EN   77 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~---~G~~~~~~~kErl------~~   77 (154)
                      .+..+..|++|++.+.+++.|.. ..++|.|. ..+++.++..+ ..-.+-.+.+.   +...     ||=+      +.
T Consensus        47 ~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~-~~~~~~l~~~~-~~~~v~y~~~~~PwPv~~-----RD~v~~~~~~~~  118 (215)
T cd08877          47 SLRMEGEIDGPLFNLLALLNEVE-LYKTWVPF-CIRSKKVKQLG-RADKVCYLRVDLPWPLSN-----REAVFRGFGVDR  118 (215)
T ss_pred             EEEEEEEecCChhHeEEEEehhh-hHhhhccc-ceeeEEEeecC-CceEEEEEEEeCceEecc-----eEEEEEEEEEee
Confidence            47788899999999999999995 79999994 55555565432 11223333322   1111     2222      21


Q ss_pred             eeCCCcEEEE--EEEecC----------cc--c----ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCCh---hhH
Q 031700           78 VDEANKVVTY--KVIDGD----------LL--K----YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDP---SVI  135 (154)
Q Consensus        78 ~D~~~~~~~Y--~~ieg~----------~~--~----~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~---~~~  135 (154)
                      ++ ++..+..  .-+..+          ..  .    ....+.+-+.+.|. +++|.+++.+..+|.+...|..   -..
T Consensus       119 ~~-~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~liN~~~  197 (215)
T cd08877         119 LE-ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSLLNFVA  197 (215)
T ss_pred             ec-cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHHHHHHH
Confidence            22 3333322  222210          10  1    24677788889998 4779999999888877644431   133


Q ss_pred             HHHHHHHHHHHHHHHh
Q 031700          136 KDFALKNFQEVDDYIL  151 (154)
Q Consensus       136 ~~~~~~~~k~ie~~l~  151 (154)
                      ++....++.+|.+.+.
T Consensus       198 k~~~~~~~~~l~k~~~  213 (215)
T cd08877         198 RKFAGLLFEKIQKAAK  213 (215)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            4555677777776553

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=95.87  E-value=0.66  Score=36.57  Aligned_cols=115  Identities=10%  Similarity=0.039  Sum_probs=68.1

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCC--C-ceeeeeeEEEEeeeCCCc
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADG--S-PIVKVSTEKIENVDEANK   83 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G--~-~~~~~~kErl~~~D~~~~   83 (154)
                      .+..+..+++|++++++++.|.. ..++|.+ .+.++++++--+... .+..++..+-  . ..-.++--+-...+.++.
T Consensus        82 ~fK~e~~vd~s~e~v~~lL~D~~-~r~~Wd~-~~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g  158 (240)
T cd08913          82 SFKVEMVVHVDAAQAFLLLSDLR-RRPEWDK-HYRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNG  158 (240)
T ss_pred             EEEEEEEEcCCHHHHHHHHhChh-hhhhhHh-hccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCC
Confidence            35677899999999999999996 6899998 788999987422122 2555553321  1 100111111111222222


Q ss_pred             ---EEEEEEEe-cCcc--c---ceeEEEEEEEEeeCC-CCeEEEEEEEEEe
Q 031700           84 ---VVTYKVID-GDLL--K---YYKAFKGIVSVNPKG-EGSLVKWACEFEK  124 (154)
Q Consensus        84 ---~~~Y~~ie-g~~~--~---~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~  124 (154)
                         .+....+. .+..  .   ...++.+-+.+.|.+ ++|.+++...-+|
T Consensus       159 ~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP  209 (240)
T cd08913         159 DPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP  209 (240)
T ss_pred             ccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence               13333232 2221  1   256677889999985 6799988776665

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=95.22  E-value=1.2  Score=35.14  Aligned_cols=113  Identities=16%  Similarity=0.060  Sum_probs=66.6

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCC-CCCCcEEEEEEcC--CCceeeeeeEEEEe-eeCCC
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDG-KAPGSVRLITYAD--GSPIVKVSTEKIEN-VDEAN   82 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~-~~~GsvR~~~~~~--G~~~~~~~kErl~~-~D~~~   82 (154)
                      .+..++.+++|++++++++.|.. ..++|.+ ...++++++--+ +. - +..++-.+  ......++-.+=.. ..+.+
T Consensus        79 ~fk~e~~vdvs~~~l~~LL~D~~-~r~~Wd~-~~~e~~vI~qld~~~-~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg  154 (236)
T cd08914          79 SVWVEKHVKRPAHLAYRLLSDFT-KRPLWDP-HFLSCEVIDWVSEDD-Q-IYHITCPIVNNDKPKDLVVLVSRRKPLKDG  154 (236)
T ss_pred             EEEEEEEEcCCHHHHHHHHhChh-hhchhHH-hhceEEEEEEeCCCc-C-EEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence            47778899999999999999996 6999999 788998887422 22 2 66655332  11110112111010 12123


Q ss_pred             --cEEE-EEEEecCcc--c---ceeE-EEEEEEEeeCC-CCeEEEEEEEEEe
Q 031700           83 --KVVT-YKVIDGDLL--K---YYKA-FKGIVSVNPKG-EGSLVKWACEFEK  124 (154)
Q Consensus        83 --~~~~-Y~~ieg~~~--~---~~~~-~~~t~~v~~~~-~~s~v~Wt~~~e~  124 (154)
                        ..+. .++....+.  .   .... ..|- .+.|.+ ++|.|++....+|
T Consensus       155 ~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP  205 (236)
T cd08914         155 NTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA  205 (236)
T ss_pred             CEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence              2232 333331111  1   2344 4444 778874 7899999999988

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=95.12  E-value=1.1  Score=34.33  Aligned_cols=140  Identities=9%  Similarity=-0.022  Sum_probs=74.3

Q ss_pred             eEEEEEEEcCCHHHHH-HHHhccCCCCccccCcccceEEEEcCCCCCCCcE-EEEEEc-CCCc--eeeeeeEEEEeeeCC
Q 031700            7 KLEVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSV-RLITYA-DGSP--IVKVSTEKIENVDEA   81 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW-~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~Gsv-R~~~~~-~G~~--~~~~~kErl~~~D~~   81 (154)
                      .+..+..+++|++++| .++.|.. ..++|.+ .+.++++++--+.. -.| +.++.+ .+.+  ...++--|-..-+..
T Consensus        50 ~fk~~~~v~~~~~~l~~~ll~D~~-~~~~W~~-~~~~~~vi~~~~~~-~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~  126 (209)
T cd08906          50 TFILKAFMQCPAELVYQEVILQPE-KMVLWNK-TVSACQVLQRVDDN-TLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD  126 (209)
T ss_pred             EEEEEEEEcCCHHHHHHHHHhChh-hccccCc-cchhhhheeeccCC-cEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence            4688899999999998 5789996 6899999 78899888642101 111 223332 1111  001122232222333


Q ss_pred             CcE-EEEEEEecCcccc------eeEEEEEEEEee--CC-CCeEEEEEEEEEeCCCCCCCh--h-hHHHHHHHHHHHHHH
Q 031700           82 NKV-VTYKVIDGDLLKY------YKAFKGIVSVNP--KG-EGSLVKWACEFEKASDDVPDP--S-VIKDFALKNFQEVDD  148 (154)
Q Consensus        82 ~~~-~~Y~~ieg~~~~~------~~~~~~t~~v~~--~~-~~s~v~Wt~~~e~~~~~~~~~--~-~~~~~~~~~~k~ie~  148 (154)
                      +.. +..++. -+..+.      ..++.+=+-+.|  .+ ++|.++|.+..+|.+. .|..  . ...+.....++.|.+
T Consensus       127 ~~i~~~~sv~-~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP~~lvN~~~~~~~~~~~~~LR~  204 (209)
T cd08906         127 RYVSAGISTT-HSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LPRYLIHQSLAATMFEFASHLRQ  204 (209)
T ss_pred             cEEEEEEEEe-cCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            322 222332 222221      221222233444  33 5799999999999885 3221  1 222444566666666


Q ss_pred             HHh
Q 031700          149 YIL  151 (154)
Q Consensus       149 ~l~  151 (154)
                      ++.
T Consensus       205 ~~~  207 (209)
T cd08906         205 RIR  207 (209)
T ss_pred             HHh
Confidence            653

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=94.90  E-value=1  Score=32.80  Aligned_cols=118  Identities=12%  Similarity=0.053  Sum_probs=69.2

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCC-ceeeeeeEEEEeeeCCCc-
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGS-PIVKVSTEKIENVDEANK-   83 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~-~~~~~~kErl~~~D~~~~-   83 (154)
                      .+..+..+++|++++|+++.|.. ..++|-| .+.++++++-.. ..-.+....+. +.. ..-.++--+-...++++. 
T Consensus        40 ~~k~~~~i~~~~~~v~~~l~d~~-~~~~w~~-~~~~~~vl~~~~-~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~  116 (193)
T cd00177          40 LLKAEGVIPASPEQVFELLMDID-LRKKWDK-NFEEFEVIEEID-EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTY  116 (193)
T ss_pred             eEEEEEEECCCHHHHHHHHhCCc-hhhchhh-cceEEEEEEEeC-CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeE
Confidence            46788899999999999999974 6789998 788998887532 12345555554 221 100011112122233222 


Q ss_pred             EEEEEEEecCccc---c---eeEEEEEEEEeeC-CCCeEEEEEEEEEeCCC
Q 031700           84 VVTYKVIDGDLLK---Y---YKAFKGIVSVNPK-GEGSLVKWACEFEKASD  127 (154)
Q Consensus        84 ~~~Y~~ieg~~~~---~---~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~  127 (154)
                      .+...-++.+..+   .   ...+.+-+.+.|. +++|.+++....++.+.
T Consensus       117 ~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~  167 (193)
T cd00177         117 VIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS  167 (193)
T ss_pred             EEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence            2222222221111   1   2233456777888 57899999999998875

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=94.10  E-value=2  Score=32.80  Aligned_cols=141  Identities=9%  Similarity=0.065  Sum_probs=74.9

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCC-ccccCcccceEEEEcCCCCCCCcEEEEEEc-C-CCcee-e-ee-eEEEEeeeCC
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLF-PKAFSHDYKSIQVLEGDGKAPGSVRLITYA-D-GSPIV-K-VS-TEKIENVDEA   81 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l-~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~-G~~~~-~-~~-kErl~~~D~~   81 (154)
                      +..+..++++++++++.+.|..+.. ++|-+ .+.+++++|--++.. .+-+...+ . +.... + ++ .......++.
T Consensus        48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~-~~~~~~vle~id~~~-~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~  125 (208)
T cd08903          48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQ-NVKDFEVVEAISDDV-SVCRTVTPSAAMKIISPRDFVDVVLVKRYEDG  125 (208)
T ss_pred             EEEEEEecCCHHHHHHHHHhccchhhhhhhh-ccccEEEEEEecCCE-EEEEEecchhcCCCcCCCceEEEEEEEecCCc
Confidence            7788999999999999998664322 79998 788998887422111 22222222 1 11000 0 11 1121222232


Q ss_pred             CcEEEEEEEecCccc---c-eeE----EEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCCh--hhH-HHHHHHHHHHHHHH
Q 031700           82 NKVVTYKVIDGDLLK---Y-YKA----FKGIVSVNPK-GEGSLVKWACEFEKASDDVPDP--SVI-KDFALKNFQEVDDY  149 (154)
Q Consensus        82 ~~~~~Y~~ieg~~~~---~-~~~----~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~--~~~-~~~~~~~~k~ie~~  149 (154)
                      ...+.+..++-+..+   . +..    ..+-++..|. .++|.++|.+..+|.+. .|..  ... .+.....++.|.++
T Consensus       126 ~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~-iP~~lvn~~~~~~~~~~~~~Lr~~  204 (208)
T cd08903         126 TISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGY-LPQTVVDSFFPASMAEFYNNLTKA  204 (208)
T ss_pred             eEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCC-cCHHHHHHHhhHHHHHHHHHHHHH
Confidence            233334334332211   1 111    2344555554 36799999999999765 3321  111 24445666777666


Q ss_pred             Hh
Q 031700          150 IL  151 (154)
Q Consensus       150 l~  151 (154)
                      |.
T Consensus       205 ~~  206 (208)
T cd08903         205 VK  206 (208)
T ss_pred             Hh
Confidence            63

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=93.94  E-value=2.2  Score=32.68  Aligned_cols=116  Identities=6%  Similarity=0.013  Sum_probs=65.8

Q ss_pred             EEEEEEE-cCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CC-CceeeeeeEEEEeeeCCCc-
Q 031700            8 LEVELEV-KSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DG-SPIVKVSTEKIENVDEANK-   83 (154)
Q Consensus         8 ~~~~~~i-~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G-~~~~~~~kErl~~~D~~~~-   83 (154)
                      +..+..+ ++|++.+++++.|.. ..++|-+ .+.++++++--+ .--.+.+..+. +- .....++--|.. .+.++. 
T Consensus        49 ~k~~~~~~~~s~e~~~~~l~D~~-~r~~Wd~-~~~e~~~ie~~d-~~~~i~y~~~~~P~pvs~RDfV~~r~~-~~~~~~~  124 (222)
T cd08871          49 IKVSAIFPDVPAETLYDVLHDPE-YRKTWDS-NMIESFDICQLN-PNNDIGYYSAKCPKPLKNRDFVNLRSW-LEFGGEY  124 (222)
T ss_pred             EEEEEEeCCCCHHHHHHHHHChh-hhhhhhh-hhceeEEEEEcC-CCCEEEEEEeECCCCCCCCeEEEEEEE-EeCCCEE
Confidence            5566666 689999999999984 6899999 677777776422 11244444443 11 110011222222 222332 


Q ss_pred             EEEEEEEecCcc---c---ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCC
Q 031700           84 VVTYKVIDGDLL---K---YYKAFKGIVSVNPK-GEGSLVKWACEFEKASD  127 (154)
Q Consensus        84 ~~~Y~~ieg~~~---~---~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~  127 (154)
                      .+...-++-+..   .   ....+.+-+.+.|. +++|.++|....+|.+.
T Consensus       125 vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~  175 (222)
T cd08871         125 IIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS  175 (222)
T ss_pred             EEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC
Confidence            221111221111   1   13456677788888 57899999998888875

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=93.79  E-value=2.2  Score=32.29  Aligned_cols=141  Identities=8%  Similarity=0.076  Sum_probs=78.5

Q ss_pred             eEEEEEEEcCCHHHHHHH-HhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-C-CCce-e-eeeeEEEEeeeCC
Q 031700            7 KLEVELEVKSSADKFWGS-IRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-D-GSPI-V-KVSTEKIENVDEA   81 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~-~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~-G~~~-~-~~~kErl~~~D~~   81 (154)
                      .+..+..+++|+++|+.. +.|.. ..++|-+ .+.++++++--+ .--.|-...+. . +.+. . .++--|-...++.
T Consensus        49 ~~k~~~~i~~~~~~v~~~l~~d~~-~~~~Wd~-~~~~~~~i~~~d-~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~  125 (208)
T cd08868          49 VFRLTGVLDCPAEFLYNELVLNVE-SLPSWNP-TVLECKIIQVID-DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIREN  125 (208)
T ss_pred             EEEEEEEEcCCHHHHHHHHHcCcc-ccceecC-cccceEEEEEec-CCcEEEEEEecCcCCCcccccceEEEEEEEecCC
Confidence            367788999999999875 56774 6899999 677887776432 11122222222 2 1110 0 1121222222333


Q ss_pred             CcEEEEEEEecCccc------ceeEEEEEEEEeeC-C--CCeEEEEEEEEEeCCCCCCC--hh-hHHHHHHHHHHHHHHH
Q 031700           82 NKVVTYKVIDGDLLK------YYKAFKGIVSVNPK-G--EGSLVKWACEFEKASDDVPD--PS-VIKDFALKNFQEVDDY  149 (154)
Q Consensus        82 ~~~~~Y~~ieg~~~~------~~~~~~~t~~v~~~-~--~~s~v~Wt~~~e~~~~~~~~--~~-~~~~~~~~~~k~ie~~  149 (154)
                      ...+...-++=+..+      ....+.+-+.+.|. +  ++|.++|.+..+|.+. .|.  -. .........++.|.++
T Consensus       126 ~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~lvN~~~~~~~~~~~~~Lr~~  204 (208)
T cd08868         126 CYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQYLVDQALASVLLDFMKHLRKR  204 (208)
T ss_pred             eEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-CcceeeehhhHHHHHHHHHHHHHH
Confidence            322333323311111      24556677888887 2  5699999999999865 332  11 2234555777788777


Q ss_pred             Hh
Q 031700          150 IL  151 (154)
Q Consensus       150 l~  151 (154)
                      +.
T Consensus       205 ~~  206 (208)
T cd08868         205 IA  206 (208)
T ss_pred             Hh
Confidence            64

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=92.99  E-value=3.2  Score=31.64  Aligned_cols=141  Identities=11%  Similarity=0.013  Sum_probs=77.6

Q ss_pred             eEEEEEEE-cCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CC-CceeeeeeEEEEeeeCCCc
Q 031700            7 KLEVELEV-KSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DG-SPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         7 ~~~~~~~i-~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G-~~~~~~~kErl~~~D~~~~   83 (154)
                      .+..+..+ ++|++.+.+++.|.. ..++|.+ .+.++++++-+....-.+-.+.+. += ..--.++-.|-...|+++.
T Consensus        46 ~~k~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~-~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~  123 (207)
T cd08911          46 EYKVYGSFDDVTARDFLNVQLDLE-YRKKWDA-TAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENK  123 (207)
T ss_pred             EEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHh-hheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCC
Confidence            35665656 999999999999995 6899998 777888887532111223344333 10 0000124444444665554


Q ss_pred             EE--EEEEEec-Ccc-----cceeEEEEEEEEeeC----CCCeEEEEEEEEEeCCCCCCChhh----HHHHHHHHHHHHH
Q 031700           84 VV--TYKVIDG-DLL-----KYYKAFKGIVSVNPK----GEGSLVKWACEFEKASDDVPDPSV----IKDFALKNFQEVD  147 (154)
Q Consensus        84 ~~--~Y~~ieg-~~~-----~~~~~~~~t~~v~~~----~~~s~v~Wt~~~e~~~~~~~~~~~----~~~~~~~~~k~ie  147 (154)
                      .+  ...-++- ...     -....|.+-+.+.|.    .++|.+.++..-+|.  +..+.--    .....-++++.|.
T Consensus       124 ~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg--G~IP~~lvN~~~~~~~~~~l~~l~  201 (207)
T cd08911         124 LIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG--VNIPSYITSWVAMSGMPDFLERLR  201 (207)
T ss_pred             EEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC--CccCHHHHHHHHHhhccHHHHHHH
Confidence            32  2222221 111     136788899999887    257888766654433  3333211    1233345666666


Q ss_pred             HHHh
Q 031700          148 DYIL  151 (154)
Q Consensus       148 ~~l~  151 (154)
                      +.++
T Consensus       202 ~a~~  205 (207)
T cd08911         202 NAAL  205 (207)
T ss_pred             HHHh
Confidence            5543

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=91.26  E-value=5.3  Score=30.37  Aligned_cols=140  Identities=10%  Similarity=0.005  Sum_probs=78.5

Q ss_pred             eEEEEEEE-cCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCC-CCCcEEEEEEc---CCCceeeeeeEEEEeee-C
Q 031700            7 KLEVELEV-KSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGK-APGSVRLITYA---DGSPIVKVSTEKIENVD-E   80 (154)
Q Consensus         7 ~~~~~~~i-~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~-~~GsvR~~~~~---~G~~~~~~~kErl~~~D-~   80 (154)
                      .+....++ ++|++.+.+++.|.. ..++|.+ .+.+.++++-+.+ +. .|-.+.+.   +-... .++--|-.-.| +
T Consensus        51 ~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~-~~~~~~~le~~~~~~~-~i~y~~~~~P~P~s~R-D~V~~r~~~~~~~  126 (209)
T cd08870          51 EYLVRGVFEDCTPELLRDFYWDDE-YRKKWDE-TVIEHETLEEDEKSGT-EIVRWVKKFPFPLSDR-EYVIARRLWESDD  126 (209)
T ss_pred             EEEEEEEEcCCCHHHHHHHHcChh-hHhhhhh-heeeEEEEEecCCCCc-EEEEEEEECCCcCCCc-eEEEEEEEEEcCC
Confidence            46777778 569999999999985 6899998 6777777765431 12 22333322   11110 12322322233 2


Q ss_pred             CCcEEEEEEEecCc-cc----ceeEEEEEEEEeeC--C-CCeEEEEEEEEEeCCCCCCChh---hHHHHHHHHHHHHHHH
Q 031700           81 ANKVVTYKVIDGDL-LK----YYKAFKGIVSVNPK--G-EGSLVKWACEFEKASDDVPDPS---VIKDFALKNFQEVDDY  149 (154)
Q Consensus        81 ~~~~~~Y~~ieg~~-~~----~~~~~~~t~~v~~~--~-~~s~v~Wt~~~e~~~~~~~~~~---~~~~~~~~~~k~ie~~  149 (154)
                      ....+....++-+. ..    ....|.+.+.+.|.  + ++|.+.++..-+|.+. .|.-.   ..+...-.+++.|.+.
T Consensus       127 ~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~-IP~wlvN~~~~~~~~~~l~~l~~a  205 (209)
T cd08870         127 RSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG-IPRELAKLAVKRGMPGFLKKLENA  205 (209)
T ss_pred             CEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC-CCHHHHHHHHHhhhHHHHHHHHHH
Confidence            33323222222211 11    36788889999987  4 5688888888877444 33211   2223344666666665


Q ss_pred             Hh
Q 031700          150 IL  151 (154)
Q Consensus       150 l~  151 (154)
                      +.
T Consensus       206 ~~  207 (209)
T cd08870         206 LR  207 (209)
T ss_pred             Hh
Confidence            53

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=88.84  E-value=8  Score=28.78  Aligned_cols=141  Identities=11%  Similarity=-0.016  Sum_probs=79.8

Q ss_pred             eEEEEEEEcCCHHHHH-HHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCce--eeeeeEEEEeee-CC
Q 031700            7 KLEVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPI--VKVSTEKIENVD-EA   81 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW-~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~--~~~~kErl~~~D-~~   81 (154)
                      .+..+..++++++++. .++.|.. ..++|-+ .+.++++++-.. .-..+.++... .-.+.  -.++--|-...| +.
T Consensus        46 ~~k~~~~v~~~~~~~~~~~~~d~~-~r~~Wd~-~~~~~~~ie~~~-~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~  122 (206)
T smart00234       46 ASRAVGVVPMVCADLVEELMDDLR-YRPEWDK-NVAKAETLEVID-NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG  122 (206)
T ss_pred             EEEEEEEEecChHHHHHHHHhccc-chhhCch-hcccEEEEEEEC-CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence            4677888999999855 5667774 6899999 777888876422 11355555443 21010  011211211122 23


Q ss_pred             CcEEEEEEEecCccc------ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCC---hhhHHHHHHHHHHHHHHHHh
Q 031700           82 NKVVTYKVIDGDLLK------YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPD---PSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        82 ~~~~~Y~~ieg~~~~------~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~---~~~~~~~~~~~~k~ie~~l~  151 (154)
                      ...+...-++.+..+      ....+.+-+.+.|. ++.|.++|....++.+. .|.   -...+.....+++.+.++|.
T Consensus       123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~~~~  201 (206)
T smart00234      123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVATLQ  201 (206)
T ss_pred             cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHHHHH
Confidence            333433333332211      23567788889998 45699999999998876 332   11333444555666655554

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins

Probab=88.30  E-value=9.2  Score=28.85  Aligned_cols=140  Identities=11%  Similarity=-0.053  Sum_probs=75.5

Q ss_pred             eEEEEEEEcCCHHHHHHHHhc--cCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCc--eeee-e-eEEEEeee
Q 031700            7 KLEVELEVKSSADKFWGSIRD--STTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSP--IVKV-S-TEKIENVD   79 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d--~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~--~~~~-~-kErl~~~D   79 (154)
                      .+..+..|++++++|.+.+.+  . ...++|-+ .+.++++++.-+ ..=.+.+..++ .+..  ..+. + .+....++
T Consensus        47 ~~k~~~~i~~~~~~v~~~l~d~~~-~~r~~Wd~-~~~~~~~le~id-~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~  123 (206)
T cd08867          47 LYRAEGIVDALPEKVIDVIIPPCG-GLRLKWDK-SLKHYEVLEKIS-EDLCVGRTITPSAAMGLISPRDFVDLVYVKRYE  123 (206)
T ss_pred             EEEEEEEEcCCHHHHHHHHHhcCc-cccccccc-cccceEEEEEeC-CCeEEEEEEccccccCccCCcceEEEEEEEEeC
Confidence            377889999999999999988  5 35689998 688998887532 11122222222 1110  0011 1 12112233


Q ss_pred             CCCcEEEEEEEecCccc---c---eeEEEEEEEEeeC---CCCeEEEEEEEEEeCCCCCCChh---hHHHHHHHHHHHHH
Q 031700           80 EANKVVTYKVIDGDLLK---Y---YKAFKGIVSVNPK---GEGSLVKWACEFEKASDDVPDPS---VIKDFALKNFQEVD  147 (154)
Q Consensus        80 ~~~~~~~Y~~ieg~~~~---~---~~~~~~t~~v~~~---~~~s~v~Wt~~~e~~~~~~~~~~---~~~~~~~~~~k~ie  147 (154)
                      +....+...-++=+..+   .   -..+.+-+-+.|.   .++|.++|.+..+|.+.. |...   ...+.....++.|.
T Consensus       124 ~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i-P~~lvn~~~~~~~~~~~~~lr  202 (206)
T cd08867         124 DNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI-PQSLVESAMPSNLVNFYTDLV  202 (206)
T ss_pred             CCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC-cHHHHHhhhhhhHHHHHHHHH
Confidence            32233333333222211   1   2333344455654   257999999999998753 2211   22244456667776


Q ss_pred             HHH
Q 031700          148 DYI  150 (154)
Q Consensus       148 ~~l  150 (154)
                      ++|
T Consensus       203 ~~~  205 (206)
T cd08867         203 KGV  205 (206)
T ss_pred             Hhc
Confidence            665

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=85.70  E-value=15  Score=28.67  Aligned_cols=140  Identities=11%  Similarity=0.069  Sum_probs=74.6

Q ss_pred             EEEEEEEc-CCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc---CCCceeeee-eEEEEeeeCCC
Q 031700            8 LEVELEVK-SSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA---DGSPIVKVS-TEKIENVDEAN   82 (154)
Q Consensus         8 ~~~~~~i~-a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~---~G~~~~~~~-kErl~~~D~~~   82 (154)
                      +.....++ ++++.+.+++-|.. ...+|.. .+.+.+++|-.+ .--.|-+..+.   +-... .++ .-++...|+..
T Consensus        54 ~Ka~~~v~~vt~~~~~~~l~D~~-~r~~Wd~-~~~~~~vie~l~-~~~~I~Y~~~k~PwPvs~R-D~V~~~~~~~~~d~~  129 (235)
T cd08872          54 LKATHAVKGVTGHEVCHYFFDPD-VRMDWET-TLENFHVVETLS-QDTLIFHQTHKRVWPAAQR-DALFVSHIRKIPALE  129 (235)
T ss_pred             EEEEEEECCCCHHHHHHHHhChh-hHHHHHh-hhheeEEEEecC-CCCEEEEEEccCCCCCCCc-EEEEEEEEEecCccc
Confidence            67777888 99999999999985 6889998 788888776421 11122233222   11110 011 11222233211


Q ss_pred             --------cEEEEEEEecCcccceeEEEEE-----------------EEEeeCCCCeEEEEEEEEEeCCCCCCChh---h
Q 031700           83 --------KVVTYKVIDGDLLKYYKAFKGI-----------------VSVNPKGEGSLVKWACEFEKASDDVPDPS---V  134 (154)
Q Consensus        83 --------~~~~Y~~ieg~~~~~~~~~~~t-----------------~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~---~  134 (154)
                              -.+..++.-....+.-...++.                 +.+.|.+++|.+++....+|.+.. |...   .
T Consensus       130 ~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~i-P~wvvn~~  208 (235)
T cd08872         130 EPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWA-PASVLRAV  208 (235)
T ss_pred             cccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCc-cHHHHHHH
Confidence                    1123332222111111111122                 223443457999999988887763 2211   2


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 031700          135 IKDFALKNFQEVDDYILK  152 (154)
Q Consensus       135 ~~~~~~~~~k~ie~~l~~  152 (154)
                      ++..+-.+++.+.+|+..
T Consensus       209 ~k~~~P~~l~~~~~~~~~  226 (235)
T cd08872         209 YKREYPKFLKRFTSYVQE  226 (235)
T ss_pred             HHhhchHHHHHHHHHHHH
Confidence            334456889999999875

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=85.56  E-value=13  Score=27.94  Aligned_cols=115  Identities=13%  Similarity=0.038  Sum_probs=68.2

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-C-CCceeeeeeEEEEeeeCCC--c
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-D-GSPIVKVSTEKIENVDEAN--K   83 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~-G~~~~~~~kErl~~~D~~~--~   83 (154)
                      +..+..|++++++|++.+-+.   -++|-+ .+.++++++--+ .-=.|-+..+. + ....-.++--|....|.++  .
T Consensus        46 ~K~~~~v~a~~~~v~~~l~d~---r~~Wd~-~~~~~~vie~id-~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~  120 (197)
T cd08869          46 WRASTEVEAPPEEVLQRILRE---RHLWDD-DLLQWKVVETLD-EDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC  120 (197)
T ss_pred             EEEEEEeCCCHHHHHHHHHHH---Hhccch-hhheEEEEEEec-CCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence            588999999999999988765   279999 688888886422 11123333332 1 1111112323333333333  2


Q ss_pred             EEEEEEEec--C-ccc--ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCC
Q 031700           84 VVTYKVIDG--D-LLK--YYKAFKGIVSVNPK-GEGSLVKWACEFEKASD  127 (154)
Q Consensus        84 ~~~Y~~ieg--~-~~~--~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~  127 (154)
                      .+...-++-  . +..  ....+.+-+.+.|. .++|.|+|.+..+|.+.
T Consensus       121 ~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~  170 (197)
T cd08869         121 VLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGR  170 (197)
T ss_pred             EEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCC
Confidence            333333321  1 111  13556678889998 47799999999999876

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]

Probab=83.91  E-value=6.9  Score=30.33  Aligned_cols=104  Identities=14%  Similarity=0.121  Sum_probs=66.9

Q ss_pred             EEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEE---EeeeCCCcEEEEE
Q 031700           12 LEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKI---ENVDEANKVVTYK   88 (154)
Q Consensus        12 ~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl---~~~D~~~~~~~Y~   88 (154)
                      -.|..+++.+|+++++.. ...++.| .-+++++++-+. +-+.+-.+..  |.++   +-|+.   +..++...+.+ .
T Consensus        74 rligysp~~my~vVS~V~-~Y~~FVP-wC~kS~V~~~~P-~~~~kA~LeV--GFk~---l~E~y~S~Vt~~~p~l~kt-~  144 (227)
T KOG3177|consen   74 RLIGYSPSEMYSVVSNVS-EYHEFVP-WCKKSDVTSRRP-SGPLKADLEV--GFKP---LDERYTSNVTCVKPHLTKT-V  144 (227)
T ss_pred             hhhCCCHHHHHHHHHhHH-Hhhcccc-ceeccceeecCC-CCCceeeEEe--cCcc---cchhheeeeEEecccceEE-e
Confidence            347889999999999985 6889999 777777665331 2244555554  3222   22332   22444554443 2


Q ss_pred             EEecCcccceeEEEEEEEEeeC-C--CCeEEEEEEEEEeCCC
Q 031700           89 VIDGDLLKYYKAFKGIVSVNPK-G--EGSLVKWACEFEKASD  127 (154)
Q Consensus        89 ~ieg~~~~~~~~~~~t~~v~~~-~--~~s~v~Wt~~~e~~~~  127 (154)
                      .-+|.+   +......|++.|. +  +.|.+...++||-..-
T Consensus       145 ~~d~rL---F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S~  183 (227)
T KOG3177|consen  145 CADGRL---FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKSL  183 (227)
T ss_pred             eccccH---HHhhhheeeeccCCCCCCeEEEEEEEEEEehhH
Confidence            345544   5566678999887 3  6799999999997654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	154
2i9y_A	166	Solution Structure Of Arabidopsis Thaliana Protein		1e-20
2bk0_A	154	Crystal Structure Of The Major Celery Allergen Api		1e-10
2wql_A	154	Crystal Structure Of The Major Carrot Allergen Dau		2e-09
1vjh_A	122	Crystal Structure Of Gene Product Of At1g24000 From		2e-09
2lpx_A	170	Solution Structure Of Strawberry Allergen Fra A 1e		8e-07
3nmp_A	178	Crystal Structure Of The Abscisic Receptor Pyl2 Mut		8e-07
3kaz_A	176	Crystal Structure Of Abscisic Acid Receptor Pyl2 Le		1e-06
3kdh_A	190	Structure Of Ligand-Free Pyl2 Length = 190		1e-06
3nj0_A	193	X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Co		1e-06
3nmh_A	178	Crystal Structure Of The Abscisic Receptor Pyl2 In		1e-06
3ujl_A	177	Crystal Structure Of Abscisic Acid Bound Pyl2 In Co		1e-06
3nj1_A	193	X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabact		1e-06
1e09_A	159	Solution Structure Of The Major Cherry Allergen Pru		5e-06
2k7h_A	157	Nmr Solution Structure Of Soybean Allergen Gly M 4		6e-06
3ie5_A	165	Crystal Structure Of Hyp-1 Protein From Hypericum P		1e-05
3qrz_B	223	Crystal Structure Of Native Abscisic Acid Receptor		1e-05
4a8u_A	159	Crystal Structure Of Native Birch Pollen Allergen B		2e-05
1fsk_A	159	Complex Formation Between A Fab Fragment Of A Monoc		2e-05
4a80_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		2e-05
1b6f_A	159	Birch Pollen Allergen Bet V 1 Length = 159		2e-05
1h2o_A	159	Solution Structure Of The Major Cherry Allergen Pru		6e-05
1llt_A	159	Birch Pollen Allergen Bet V 1 Mutant E45s Length =		9e-05
1qmr_A	159	Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E4		1e-04
4a84_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		2e-04
3rws_A	168	Crystal Structure Of Medicago Truncatula Nodulin 13		2e-04
1fm4_A	159	Crystal Structure Of The Birch Pollen Allergen Bet		3e-04
1xdf_A	157	Crystal Structure Of Pathogenesis-Related Protein L		4e-04
2qim_A	158	Crystal Structure Of Pathogenesis-Related Protein L		6e-04

>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein At1g70830, A Member Of The Major Latex Protein Family Length = 166

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 5/153 (3%)
Query: 2   ASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY 61
           +S  GKLE ++E+K+SADKF            KA   + +   + EGD    GS+    Y
Sbjct: 13  SSLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNY 72
Query: 62  A-DGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKW 118
             DG    KV+ E+IE V+    ++T++VI+GDL+K YK+F   + V PK  G GS+V W
Sbjct: 73  VHDGE--AKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHW 130
Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151
             E+EK S++V  P  +  F ++  +E+D+++L
Sbjct: 131 HLEYEKISEEVAHPETLLQFCVEVSKEIDEHLL 163

>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1 Length = 154

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 10  VELEVKSSADK-FWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIV 68
           +EL    SA+K F G + D  T+ PKA    YKS+++ +GDG  PG++++IT  DG PI 
Sbjct: 8   LELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDG-GPGTLKIITLPDGGPIT 65
Query: 69  KVSTEKIENVDEANKVVTYKVIDGD-LLKYYKAFKGIVSVNPKGE-GSLVKWACEFEKAS 126
            + T +I+ V++      Y VIDGD LL + ++ +  V + P  + GS+ K    F    
Sbjct: 66  TM-TLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKG 124
Query: 127 DDV 129
           D V
Sbjct: 125 DAV 127

>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1 Length = 154

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 17/151 (11%)
Query: 12  LEVKSS--ADK-FWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIV 68
           LE+ SS  A+K F G + D  T+ PKA +  YKS++V +GDG A G+VR+IT  +GSPI 
Sbjct: 8   LEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGA-GTVRIITLPEGSPIT 65
Query: 69  KVSTEKIENVDEANK-VVTY--KVIDGD-LLKYYKAFKGIVSVNPKGE-GSLVKWACEFE 123
            ++       D  NK  ++Y   VIDGD LL + ++ +  + V P  + GS+ K    F 
Sbjct: 66  TMTVRT----DAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFH 121
Query: 124 KASDDVPDPSVIKDFALKN---FQEVDDYIL 151
              D V     IK    +N   F+ ++ Y++
Sbjct: 122 TKGDAVVPEENIKFADAQNTALFKAIEAYLI 152

>pdb|1VJH|A Chain A, Crystal Structure Of Gene Product Of At1g24000 From Arabidopsis Thaliana Length = 122

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 36/152 (23%)
Query: 2   ASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY 61
           ++  G L V+ +VK  ADKF+ +  + T              +  E +GK          
Sbjct: 1   STLKGALSVKFDVKCPADKFFSAFVEDTN-------------RPFEKNGKT--------- 38
Query: 62  ADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNP--KGEGSLVKWA 119
                       +IE VD   K  T +    ++ KY+K  KG ++V P   G+GS V W 
Sbjct: 39  ------------EIEAVDLVKKTXTIQXSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWT 86
Query: 120 CEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151
             FEK   D+ DP  I D ++K F+++D+ IL
Sbjct: 87  FHFEKVHKDIDDPHSIIDESVKYFKKLDEAIL 118

>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e Length = 170

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 21 FWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE 80
          F   + D+  L PK      K  ++LEGDG  PG+++ IT+ +GS    V   KI ++D+
Sbjct: 20 FKAFVLDADNLIPKIAPQAVKCAEILEGDG-GPGTIKKITFGEGSHYGYVK-HKIHSIDK 77
Query: 81 ANKVVTYKVIDGDLL 95
           N   +Y +I+GD L
Sbjct: 78 VNHTYSYSLIEGDAL 92

>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant A93f In Complex With Pyrabactin Length = 178

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13  EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
            + + A   W  IR      P+ + H  K  +++ GDG   GSVR +T   G P    ST
Sbjct: 31  RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLPF-STST 86
Query: 73  EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
           E++E VD+ ++V++++V+ G+     K +K + SVN
Sbjct: 87  ERLEFVDDDHRVLSFRVVGGE--HRLKNYKSVTSVN 120

>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 Length = 176

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13  EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
            + + A   W  IR      P+ + H  K  +++ GDG   GSVR +T   G P    ST
Sbjct: 30  RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLP-ASTST 85
Query: 73  EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
           E++E VD+ ++V++++V+ G+     K +K + SVN
Sbjct: 86  ERLEFVDDDHRVLSFRVVGGE--HRLKNYKSVTSVN 119

>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2 Length = 190

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13  EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
            + + A   W  IR      P+ + H  K  +++ GDG   GSVR +T   G P    ST
Sbjct: 42  RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLP-ASTST 97
Query: 73  EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
           E++E VD+ ++V++++V+ G+     K +K + SVN
Sbjct: 98  ERLEFVDDDHRVLSFRVVGGE--HRLKNYKSVTSVN 131

>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex Length = 193

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13  EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
            + + A   W  IR      P+ + H  K  +++ GDG   GSVR +T   G P    ST
Sbjct: 45  RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLP-ASTST 100
Query: 73  EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
           E++E VD+ ++V++++V+ G+     K +K + SVN
Sbjct: 101 ERLEFVDDDHRVLSFRVVGGE--HRLKNYKSVTSVN 134

>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex With Pyrabactin Length = 178

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13  EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
            + + A   W  IR      P+ + H  K  +++ GDG   GSVR +T   G P    ST
Sbjct: 31  RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLP-ASTST 86
Query: 73  EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
           E++E VD+ ++V++++V+ G+     K +K + SVN
Sbjct: 87  ERLEFVDDDHRVLSFRVVGGE--HRLKNYKSVTSVN 120

>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex With Type 2c Protein Phosphatase Abi2 Length = 177

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13  EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
            + + A   W  IR      P+ + H  K  +++ GDG   GSVR +T   G P    ST
Sbjct: 31  RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLP-ASTST 86
Query: 73  EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
           E++E VD+ ++V++++V+ G+     K +K + SVN
Sbjct: 87  ERLEFVDDDHRVLSFRVVGGE--HRLKNYKSVTSVN 120

>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A Complex Length = 193

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13  EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
            + + A   W  IR      P+ + H  K  +++ GDG   GSVR +T   G P    ST
Sbjct: 45  RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLP-ASTST 100
Query: 73  EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
           E++E VD+ ++V++++++ G+     K +K + SVN
Sbjct: 101 ERLEFVDDDHRVLSFRIVGGE--HRLKNYKSVTSVN 134

>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Length = 159

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 21 FWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE 80
          F   + D+  L PK      K  ++LEGDG  PG+++ IT+ +GS    V   KI+++D+
Sbjct: 19 FKAFVLDADNLVPKIAPQAIKHSEILEGDG-GPGTIKKITFGEGSQYGYVK-HKIDSIDK 76
Query: 81 ANKVVTYKVIDGDLL 95
           N   +Y +I+GD L
Sbjct: 77 ENYSYSYTLIEGDAL 91

>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4 Length = 157

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 25  IRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY-ADGSPIVKVSTEKIENVDEANK 83
           + D+  + PKA    +KS++ +EG+G  PG+++ IT+  DG    K    KIE++DEAN 
Sbjct: 23  VTDADNVIPKALDS-FKSVENVEGNG-GPGTIKKITFLEDGE--TKFVLHKIESIDEANL 78
Query: 84  VVTYKVIDGDLLKYYK---AFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFAL 140
             +Y V+ G  L        F   +   P G GS  K   ++E   D  P+   +K    
Sbjct: 79  GYSYSVVGGAALPDTAEKITFDSKLVAGPNG-GSAGKLTVKYETKGDAEPNQDELKTGKA 137
Query: 141 KN---FQEVDDYIL 151
           K    F+ ++ Y+L
Sbjct: 138 KADALFKAIEAYLL 151

>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum Perforatum (St John's Wort) Involved In Hypericin Biosynthesis Length = 165

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 21 FWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE 80
          F   + +   +  KA  H +KS +++EGDG   G+V  IT+ DG P+  +   K + +D 
Sbjct: 26 FKALVLERHQVLVKAQPHVFKSGEIIEGDGGV-GTVTKITFVDGHPLTYM-LHKFDEIDA 83
Query: 81 ANKVVTYKVIDGDLLK 96
          AN    Y + +GD+L+
Sbjct: 84 ANFYCKYTLFEGDVLR 99

>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1 Isoform J Length = 159

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 13/144 (9%)
Query: 14  VKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTE 73
           V  +A  F   I D   LFPK       S++ +EG+G  PG+++ I++ +G P  K   +
Sbjct: 12  VIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNG-GPGTIKKISFPEGFPF-KYVKD 69
Query: 74  KIENVDEANKVVTYKVID----GDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDV 129
           +++ VD  N   +Y VI+    GD L+       IV+  P G GS++K   ++    D  
Sbjct: 70  RVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVAT-PNG-GSILKINNKYHTKGD-- 125
Query: 130 PDPSVIKDFALKNFQEVDDYILKA 153
                +K   +K  +E+ + +L+A
Sbjct: 126 ---HEVKAEQIKASKEMGETLLRA 146

>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal Igg Antibody And The Major Allergen From Birch Pollen Bet V 1 Length = 159

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 6   GKLEVELEVKS---SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA 62
           G    E E  S   +A  F   I D   LFPK       S++ +EG+G  PG+++ I++ 
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNG-GPGTIKKISFP 59
Query: 63  DGSPIVKVSTEKIENVDEANKVVTYKVID----GDLLKYYKAFKGIVSVNPKGEGSLVKW 118
           +G P  K   ++++ VD  N    Y VI+    GD L+       IV+  P G GS++K 
Sbjct: 60  EGLPF-KYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVAT-PDG-GSILKI 116
Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153
           + ++    D       +K   +K  +E+ + +L+A
Sbjct: 117 SNKYHTKGD-----HEVKAEQVKASKEMGETLLRA 146

>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans) Length = 159

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 6   GKLEVELEVKS---SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA 62
           G    E E  S   +A  F   I D   LFPK       S++ +EG+G  PG+++ I++ 
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNG-GPGTIKKISFP 59
Query: 63  DGSPIVKVSTEKIENVDEANKVVTYKVID----GDLLKYYKAFKGIVSVNPKGEGSLVKW 118
           +G P  K   ++++ VD  N    Y VI+    GD L+       IV+  P G GS++K 
Sbjct: 60  EGFPF-KYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVAT-PDG-GSILKI 116
Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153
           + ++    D       +K   +K  +E+ + +L+A
Sbjct: 117 SNKYHTKGD-----HEVKAEQVKASKEMGETLLRA 146

>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1 Length = 159

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 6   GKLEVELEVKS---SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA 62
           G    E E  S   +A  F   I D   LFPK       S++ +EG+G  PG+++ I++ 
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNG-GPGTIKKISFP 59
Query: 63  DGSPIVKVSTEKIENVDEANKVVTYKVID----GDLLKYYKAFKGIVSVNPKGEGSLVKW 118
           +G P  K   ++++ VD  N    Y VI+    GD L+       IV+  P G GS++K 
Sbjct: 60  EGFPF-KYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVAT-PDG-GSILKI 116
Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153
           + ++    D       +K   +K  +E+ + +L+A
Sbjct: 117 SNKYHTKGD-----HEVKAEQVKASKELGETLLRA 146

>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Mutant E45w Length = 159

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 21 FWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE 80
          F   + D+  L PK      K  ++L GDG  PG+++ IT+ +GS    V   KI+++D+
Sbjct: 19 FKAFVLDADNLVPKIAPQAIKHSEILWGDG-GPGTIKKITFGEGSQYGYVK-HKIDSIDK 76
Query: 81 ANKVVTYKVIDGDLL 95
           N   +Y +I+GD L
Sbjct: 77 ENYSYSYTLIEGDAL 91

>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s Length = 159

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 16/155 (10%)
Query: 6   GKLEVELEVKS---SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA 62
           G    E E  S   +A  F   I D   LFPK       S++ + G+G  PG+++ I++ 
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNG-GPGTIKKISFP 59
Query: 63  DGSPIVKVSTEKIENVDEANKVVTYKVID----GDLLKYYKAFKGIVSVNPKGEGSLVKW 118
           +G P  K   ++++ VD  N    Y VI+    GD L+       IV+  P G GS++K 
Sbjct: 60  EGLPF-KYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVAT-PDG-GSILKI 116
Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153
           + ++    D       +K   +K  +E+ + +L+A
Sbjct: 117 SNKYHTKGD-----HEVKAEQVKASKEMGETLLRA 146

>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s, P108g Length = 159

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 6  GKLEVELEVKS---SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA 62
          G    E E  S   +A  F   I D  TLFP+       S++ + G+G  PG+++ I++ 
Sbjct: 1  GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNG-GPGTIKKISFP 59
Query: 63 DGSPIVKVSTEKIENVDEANKVVTYKVIDG 92
          +G P  K   ++++ VD  N    Y VI+G
Sbjct: 60 EGLPF-KYVKDRVDEVDHTNFKYNYSVIEG 88

>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A F30v Mutant In Complex With Deoxycholate Length = 159

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 16/155 (10%)
Query: 6   GKLEVELEVKS---SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA 62
           G    E E  S   +A  F   I D   L PK       S++ +EG+G  PG+++ I++ 
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNG-GPGTIKKISFP 59
Query: 63  DGSPIVKVSTEKIENVDEANKVVTYKVID----GDLLKYYKAFKGIVSVNPKGEGSLVKW 118
           +G P  K   ++++ VD  N    Y VI+    GD L+       IV+  P G GS++K 
Sbjct: 60  EGFPF-KYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVAT-PDG-GSILKI 116
Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153
           + ++    D       +K   +K  +E+ + +L+A
Sbjct: 117 SNKYHTKGD-----HEVKAEQVKASKEMGETLLRA 146

>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l Length = 159

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 14 VKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTE 73
          V  +A  F   I D   L PK       S++ +EG+G  PG+++ I + +G P  K   +
Sbjct: 12 VIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNG-GPGTIKKINFPEGFPF-KYVKD 69
Query: 74 KIENVDEANKVVTYKVIDG 92
          +++ VD  N    Y VI+G
Sbjct: 70 RVDEVDHTNFKYNYSVIEG 88

>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr-10.2a From Yellow Lupine Length = 157

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 25 IRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV 84
          ++D+  + PKA     +SI+ +EG+G  PG+++ +T  +G    K    KIE VDEAN  
Sbjct: 23 VKDADAIIPKAV-EAIQSIETVEGNG-GPGTIKKLTLIEGGE-TKYVLHKIEAVDEANLR 79
Query: 85 VTYKVIDG 92
            Y ++ G
Sbjct: 80 YNYSIVGG 87

>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr-10.2b From Yellow Lupine In Complex With Cytokinin Length = 158

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 25 IRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV 84
          + D+  + PKA     +S++++EG+G  PG+++ +T+ +G    K    KIE +DEAN  
Sbjct: 24 VTDADIIIPKAV-ETIQSVEIVEGNG-GPGTIKKLTFIEGGE-SKYVLHKIEAIDEANLG 80
Query: 85 VTYKVIDG 92
            Y ++ G
Sbjct: 81 YNYSIVGG 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	1e-48
1vjh_A	122	BET V I allergen family; structural genomics, cent	4e-35
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	2e-32
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	2e-30
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	5e-30
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	3e-29
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	3e-28
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	1e-27
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	2e-27
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	4e-27
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	7e-27
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	3e-26
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	4e-25
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	2e-22
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	8e-20
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	1e-18
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	1e-15
2le1_A	151	Uncharacterized protein; structural genomics, nort	3e-15
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	2e-11
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	3e-11
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	5e-10
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	5e-08
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	3e-05
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	4e-05

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score =  153 bits (388), Expect = 1e-48
 Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 3/149 (2%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
           GKLE ++E+K+SADKF            KA   + +   + EGD    GS+    Y    
Sbjct: 17  GKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDG 76

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKWACEFE 123
              KV+ E+IE V+    ++T++VI+GDL+K YK+F   + V PK  G GS+V W  E+E
Sbjct: 77  E-AKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYE 135

Query: 124 KASDDVPDPSVIKDFALKNFQEVDDYILK 152
           K S++V  P  +  F ++  +E+D+++L 
Sbjct: 136 KISEEVAHPETLLQFCVEVSKEIDEHLLA 164

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Length = 122

 Score =  117 bits (295), Expect = 4e-35
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 36/151 (23%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
           G L V+ +VK  ADKF+                                           
Sbjct: 5   GALSVKFDVKCPADKFF----------------------------------SAFVEDTNR 30

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKWACEFE 123
           P  K    +IE VD   K +T ++   ++ KY+K  KG ++V P   G+GS V W   FE
Sbjct: 31  PFEKNGKTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFE 90

Query: 124 KASDDVPDPSVIKDFALKNFQEVDDYILKAN 154
           K   D+ DP  I D ++K F+++D+ IL   
Sbjct: 91  KVHKDIDDPHSIIDESVKYFKKLDEAILNFK 121

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score =  111 bits (280), Expect = 2e-32
 Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 7/151 (4%)

Query: 6   GKLEVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADG 64
            +   + E+    +  W    +D  T+ PK   H  K +Q++EGDG   G++ +  +   
Sbjct: 3   KEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDG-GVGTILIFNFLPE 61

Query: 65  SPIVKVSTEKIENVDEANKVVTYKVIDGDLL-KYYKAFKGIVSVNPKGEG-SLVKWACEF 122
                   E+I   DE++  +  +VI+G  L +    +K    ++   E  +LV     +
Sbjct: 62  VS-PSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISY 120

Query: 123 EKASDDVPDPSVIK--DFALKNFQEVDDYIL 151
           +  SD     +  K     L   + ++ Y+ 
Sbjct: 121 DHDSDIEEKVTPTKTSQSTLMYLRRLERYLS 151

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score =  108 bits (270), Expect = 2e-30
 Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 9/153 (5%)

Query: 6   GKLEVELEVKSSADKFWG--SIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD 63
             +  ELEV +SAD  W   S        P      ++ +++  GDG   G++  +T+  
Sbjct: 29  KVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEI-IGDGG-VGTILDMTFVP 86

Query: 64  GSPIVKVSTEKIENVDEANKVVTYKVIDGDLL-KYYKAFKGIVSVNPKGEG-SLVKWACE 121
           G        EK   VD  +++   ++I+G  L      +   + V P G+   ++K + E
Sbjct: 87  GEF-PHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTE 145

Query: 122 FEKASDDV--PDPSVIKDFALKNFQEVDDYILK 152
           +    + V   +P +           +   +L+
Sbjct: 146 YHVKPEFVKIVEPLITTGPLAAMADAISKLVLE 178

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score =  105 bits (264), Expect = 5e-30
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 9/155 (5%)

Query: 6   GKLEVELEVKSSADKFWGS-IRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADG 64
              E E      A + + + I D   LFPK       S++ +EG+G  PG+++ I++ +G
Sbjct: 3   FNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGG-PGTIKKISFPEG 61

Query: 65  SPIVKVSTEKIENVDEANKVVTYKVIDGD-LLKYYKAFKGIVSVNPKGEG-SLVKWACEF 122
            P  K   ++++ VD  N   +Y VI+G  +    +     + +     G S++K   ++
Sbjct: 62  FP-FKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKY 120

Query: 123 EKASDDVPDPSVI---KDFALKNFQEVDDYILKAN 154
               D       I   K+      + V+ Y+L A+
Sbjct: 121 HTKGDHEVKAEQIKASKEMGETLLRAVESYLL-AH 154

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score =  101 bits (252), Expect = 3e-28
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 9/155 (5%)

Query: 6   GKLEVELEVKSSADKFWGS-IRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADG 64
              E E   +    + + + + D+  L PK      K  ++LEGDG  PG+++ IT+ +G
Sbjct: 3   FTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGG-PGTIKKITFGEG 61

Query: 65  SPIVKVSTEKIENVDEANKVVTYKVIDGDLL--KYYKAFKGIVSVNPKGEGSLVKWACEF 122
           S        KI+++D+ N   +Y +I+GD L     K       V     GS++K    +
Sbjct: 62  SQ-YGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120

Query: 123 EKASDDVPDPSVI---KDFALKNFQEVDDYILKAN 154
               +       +   K+ A   F+ ++ Y+   +
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLK-GH 154

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score = 99.4 bits (247), Expect = 2e-27
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 10/159 (6%)

Query: 1   MASAGGKLEVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLI 59
           MA+    +  E E   +  + +   + +   +  KA  H +KS +++EGDG   G+V  I
Sbjct: 7   MAA--YTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGG-VGTVTKI 63

Query: 60  TYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLL-KYYKAFKGIVSVNPKGEGSLVKW 118
           T+ DG P +     K + +D AN    Y + +GD+L    +     V +   G GS  K 
Sbjct: 64  TFVDGHP-LTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVGGGSKGKI 122

Query: 119 ACEFEKASDDVPDPSVI---KDFALKNFQEVDDYILKAN 154
              +        +   +   +  A + +++V++Y+  AN
Sbjct: 123 TVTYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLA-AN 160

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score = 98.6 bits (245), Expect = 4e-27
 Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 10/155 (6%)

Query: 6   GKLEVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADG 64
              + E     +  K +   + D+  + PKA     +S++++EG+G  PG+++ +T+ +G
Sbjct: 4   FTFQDEYTSTIAPAKLYKALVTDADIIIPKA-VETIQSVEIVEGNG-GPGTIKKLTFIEG 61

Query: 65  SPIVKVSTEKIENVDEANKVVTYKVIDGDLL--KYYKAFKGIVSVNPKGEGSLVKWACEF 122
               K    KIE +DEAN    Y ++ G  L     K       V     GS+ K   + 
Sbjct: 62  GE-SKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKI 120

Query: 123 EKASDDVPDPSVI---KDFALKNFQEVDDYILKAN 154
           E   D  P+       K      F+ ++ Y+  A+
Sbjct: 121 ETKGDAQPNEEEGKAAKARGDAFFKAIESYLS-AH 154

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score = 97.8 bits (243), Expect = 7e-27
 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 10/154 (6%)

Query: 7   KLEVELEVKSSADKFWGS-IRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
               E     +  K + +  +DS T+  K      +SI+++EG+G   G+++ IT  +G 
Sbjct: 4   VFRDETSSSVAPAKLYKALTKDSDTIAQKI-DGPIQSIELVEGNGG-VGTIKKITANEGD 61

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDLL--KYYKAFKGIVSVNPKGEGSLVKWACEFE 123
                  +K++ +DEAN    Y ++ G  L     K       V   G GS+ K   +F 
Sbjct: 62  K-TSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFH 120

Query: 124 KASDDVPDPSVI---KDFALKNFQEVDDYILKAN 154
              D     +V           F+ ++ Y+L AN
Sbjct: 121 TKGDAPLSDAVRDDALAKGAGFFKAIEGYVL-AN 153

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score = 96.3 bits (239), Expect = 3e-26
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 9/154 (5%)

Query: 6   GKLEVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADG 64
              E E     +  K +    +DS  + PK      +S++++EG+G  PG+++ I     
Sbjct: 3   FAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNG-GPGTIKKIIAIHD 60

Query: 65  SPIVKVSTEKIENVDEANKVVTYKVIDGDLL--KYYKAFKGIVSVNPKGEGSLVKWACEF 122
                    K++ +DEAN    Y +I G+ L     K       +     GS+ K   +F
Sbjct: 61  GH-TSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKF 119

Query: 123 EKASDDVPDPSV--IKDFALKNFQEVDDYILKAN 154
               D + +      K   L  F+ ++ Y+L A+
Sbjct: 120 HTKGDVLSETVRDQAKFKGLGLFKAIEGYVL-AH 152

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Length = 208

 Score = 87.5 bits (216), Expect = 2e-22
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 5/126 (3%)

Query: 13  EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
            + +  +  W  +R      P+ + H  KS  V E      G  R +    G P    S 
Sbjct: 61  RIHAPPETVWSVVRRFDR--PQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLP-ANTSR 117

Query: 73  EKIENVDEANKVVTYKVIDGDL-LKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPD 131
           E+++ +D+  +V  + +  G+  L+ YK+    V    K E     W    E    DVP+
Sbjct: 118 ERLDLLDDDRRVTGFSITGGEHRLRNYKSVT-TVHRFEKEEEEERIWTVVLESYVVDVPE 176

Query: 132 PSVIKD 137
            +  +D
Sbjct: 177 GNSEED 182

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Length = 211

 Score = 81.0 bits (199), Expect = 8e-20
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 8/126 (6%)

Query: 13  EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
            + +  +  W  +R      P+ + H  KS  V +      G  R +    G P    ST
Sbjct: 57  RIHAPPELVWSIVRRFDK--PQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLP-ANTST 113

Query: 73  EKIENVDEANKVVTYKVIDGDL-LKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPD 131
           E+++ +D+  +V  + +I G+  L  YK+   + +V+   + +   W    E    D+P+
Sbjct: 114 ERLDILDDERRVTGFSIIGGEHRLTNYKS---VTTVHRFEKEN-RIWTVVLESYVVDMPE 169

Query: 132 PSVIKD 137
            +   D
Sbjct: 170 GNSEDD 175

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score = 77.1 bits (189), Expect = 1e-18
 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 7/129 (5%)

Query: 13  EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
            + + A   W  IR      P+ + H  K  +++ GDG   GSVR +T   G P    ST
Sbjct: 42  RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGD-VGSVREVTVISGLP-ASTST 97

Query: 73  EKIENVDEANKVVTYKVIDGDL-LKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPD 131
           E++E VD+ ++V++++V+ G+  LK YK+   +     +  G    +    E  + D+P+
Sbjct: 98  ERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGK--VYTVVLESYTVDIPE 155

Query: 132 PSVIKDFAL 140
            +  +D  +
Sbjct: 156 GNTEEDTKM 164

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Length = 183

 Score = 69.3 bits (169), Expect = 1e-15
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 11/128 (8%)

Query: 13  EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
            +K+     W  +R      P+ +        V +G     GSVR +    G P    ST
Sbjct: 34  HIKAPLHLVWSIVRRFDE--PQKYKPFISRCVV-QGKKLEVGSVREVDLKSGLP-ATKST 89

Query: 73  EKIENVDEANKVVTYKVIDGDL--LKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVP 130
           E +E +D+   ++  +++ GD     Y               G+L   +        DVP
Sbjct: 90  EVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVV-----DVP 144

Query: 131 DPSVIKDF 138
           + +  ++ 
Sbjct: 145 EGNTKEET 152

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151

 Score = 67.5 bits (164), Expect = 3e-15
 Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 17/150 (11%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
             L   +EV + A   W  + D + +    +     +  +       PG+ R+       
Sbjct: 2   ATLRRSVEVAAPAADVWTLVGDFSAI--HRWHPQVSAPTLRGASPHTPGAERVFGAGTEE 59

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDL-LKYYKAFKGIVSVNPKGE-GSLVKWACEFE 123
            +     E++   DE+ + + Y + D    +  ++A   ++ V P+ +    V W   F+
Sbjct: 60  EL----VERLVERDESARRLVYTMPDPPFPITNHRA---VLEVVPRDDRHCTVVWTAMFD 112

Query: 124 KASDDVPDPSVIKDFALKNFQEVDDYILKA 153
                   P   ++        V    L A
Sbjct: 113 ------CSPETARELESVIGDGVFAVGLNA 136

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} PDB: 3cnw_A Length = 146

 Score = 57.5 bits (138), Expect = 2e-11
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 19/133 (14%)

Query: 7   KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSP 66
                +E+  S ++ W  I    +L    +     S ++ EG     G VR +   DG  
Sbjct: 3   HTTTSMEIFGSTEQVWQLIGGFNSL--PDWLPYIPSSKLTEG-----GRVRHLANPDGET 55

Query: 67  IVKVSTEKIENVDEANKVVTYKVIDGDL-LKYYKAFKGIVSVNPKGEG--SLVKWACEFE 123
           I+    E++E  ++  +  TY +++    +  Y +    + V    E   SLV+W+  F 
Sbjct: 56  II----ERLEVFNDKERYYTYSIMNAPFPVTNYLS---TIQVKEGTESNTSLVEWSGTFT 108

Query: 124 KASDDVPDPSVIK 136
                V D   I 
Sbjct: 109 --PVAVSDEEAIN 119

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Length = 205

 Score = 58.2 bits (140), Expect = 3e-11
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 10/120 (8%)

Query: 13  EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
            +K+     W  +R      P+ +        V+       GS+R +    G P    ST
Sbjct: 59  HIKAPLHLVWSLVRRFDQ--PQKYKPFVSRCTVIGDPE--IGSLREVNVKSGLPATT-ST 113

Query: 73  EKIENVDEANKVVTYKVIDGDL-LKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPD 131
           E++E +D+   ++  K+I GD  LK Y +    ++V+P+            E    DVP 
Sbjct: 114 ERLELLDDEEHILGIKIIGGDHRLKNYSSI---LTVHPEIIEG-RAGTMVIESFVVDVPQ 169

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Length = 160

 Score = 53.9 bits (129), Expect = 5e-10
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 14/130 (10%)

Query: 7   KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSP 66
           K+   + V +  ++ W  IR+             KS    +  G    SV      +G  
Sbjct: 3   KVYNSIVVDAPVERVWSRIRNFHDF--SWAPSLIKSC--KKVGGGGGYSVGARRLLNGE- 57

Query: 67  IVKVSTEKIENVDEANKVVTYKVIDGDL---LKYYKAFKGIVSVNPKGEG--SLVKWACE 121
                 + +    E  + + Y + +G           + G + + P      + V+W+  
Sbjct: 58  ----FLDTLIAYSEIERRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGS 113

Query: 122 FEKASDDVPD 131
           +E AS +  +
Sbjct: 114 WESASTEAVE 123

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 3klx_A Length = 189

 Score = 49.0 bits (116), Expect = 5e-08
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 13  EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDG----KAPGSVRLITYADGSPIV 68
            V + A   W  +RD     P  + H  KS  +            G++R ++   G P  
Sbjct: 37  RVDAPAHAIWRFVRDFAN--PNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPAS 94

Query: 69  KVSTEKIENVDEANKVVTYKVIDGDL-LKYYKAFKGI-VSVNPKGEGSLVKWACEFEKAS 126
             S E +E +DE  ++++++V+ G+  L  Y++   +   V  + +     ++   E   
Sbjct: 95  T-SVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYI 153

Query: 127 DDVPD 131
            D+P 
Sbjct: 154 VDIPQ 158

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Length = 147

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 25/148 (16%), Positives = 56/148 (37%), Gaps = 14/148 (9%)

Query: 7   KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSP 66
           ++  E  + +  ++ +   +D        +  + +S++V+  +G      R +  A G  
Sbjct: 3   EVRAERYIPAPPERVYRLAKDLEG-LKP-YLKEVESLEVVAREGA-RTRSRWVAVAMGKK 59

Query: 67  IVKVSTEKIENV-DEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKA 125
           +  +     E   D+ N    +   +GD       ++G     P+GEG+ V     +E  
Sbjct: 60  VRWLE----EEEWDDENLRNRFFSPEGDF----DRYEGTWVFLPEGEGTRVVLTLTYELT 111

Query: 126 SDDVPDPSVIKDFALKNFQEVDDYILKA 153
                   +++    K  QE  + +LK 
Sbjct: 112 IP--IFGGLLRKLVQKLMQENVESLLKG 137

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Length = 159

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 8/124 (6%)

Query: 9   EVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIV 68
           + E+ + +  +  W    D     P  FS  Y S++VL  D     + RL  + D    V
Sbjct: 6   DNEITIAAPMELVWNMTNDIEKW-PGLFSE-YASVEVLGRDDDK-VTFRLTMHPDADGKV 62

Query: 69  KVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDD 128
                +         V   +V  G      +    +       EG++++W  +F     D
Sbjct: 63  WSWVSERVADPVTRTVRAQRVETGPF----QYMNIVWEYAETAEGTVMRWTQDFA-MKPD 117

Query: 129 VPDP 132
            P  
Sbjct: 118 APVD 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	100.0
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	100.0
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	100.0
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	100.0
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	100.0
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	100.0
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	100.0
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	100.0
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	100.0
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	100.0
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	100.0
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	100.0
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.97
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	99.97
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	99.97
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	99.97
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	99.96
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.96
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	99.96
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.96
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	99.95
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	99.94
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.93
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.69
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.68
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.66
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.63
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.61
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.47
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.43
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.35
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.31
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	99.25
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	99.16
2leq_A	146	Uncharacterized protein; start domains, structural	99.13
2lcg_A	142	Uncharacterized protein; start domain, structural	99.07
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	99.02
3put_A	166	Hypothetical conserved protein; structural genomic	99.0
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	98.98
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	98.97
2il5_A	171	Hypothetical protein; structural genomics, APC2365	98.96
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	98.96
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	98.93
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.93
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.9
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.9
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.87
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.85
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	98.84
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.82
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.81
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.74
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	98.73
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	98.71
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.7
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	98.67
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	98.64
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	98.52
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	98.51
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	98.38
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	98.28
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	98.26
2luz_A	192	CALU16; structural genomics, northeast structural	98.12
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.05
3qsz_A	189	STAR-related lipid transfer protein; structural ge	98.04
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	97.83
2lio_A	136	Uncharacterized protein; structural genomics, nort	97.8
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	97.55
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	97.0
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	95.98
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	95.43
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	95.36
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	94.88
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	92.69
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	87.9

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=100.00  E-value=1e-42  Score=256.39  Aligned_cols=147  Identities=23%  Similarity=0.460  Sum_probs=134.6

Q ss_pred             ceEEEEEEEcCCHHHHHHHH-hccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            6 GKLEVELEVKSSADKFWGSI-RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~-~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      .+++.+++|++||++||+++ +||++++|+|+|+.|++|+++||+| ++||||+|+|.+|.+. +++||||+++|+++|+
T Consensus         3 ~~~~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdg-g~Gsir~~~~~~g~~~-~~~kErl~~iD~~~~~   80 (159)
T 4a8u_A            3 FNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNG-GPGTIKKISFPEGFPF-KYVKDRVDEVDHTNFK   80 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSS-STTCEEEEECCTTSSC-SEEEEEEEEEETTTTE
T ss_pred             EEEEEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCC-CCceEEEEEEecCCCc-cEEEEEEEEEccccCE
Confidence            37899999999999999999 9998778999999999999999997 8999999999988653 5799999999999999


Q ss_pred             EEEEEEecCccc-ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhH---HHHHHHHHHHHHHHHhhCC
Q 031700           85 VTYKVIDGDLLK-YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVI---KDFALKNFQEVDDYILKAN  154 (154)
Q Consensus        85 ~~Y~~ieg~~~~-~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~---~~~~~~~~k~ie~~l~~~~  154 (154)
                      ++|+++||+++. .|++|.++++|.|. ++||+++|+++|++.++..++|+.+   ++++.+|+|+||+||++||
T Consensus        81 ~~y~iiegd~l~~~~~~y~~ti~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~k~~~~~~~~~~k~ie~yll~np  155 (159)
T 4a8u_A           81 YSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHS  155 (159)
T ss_dssp             EEEEEEEETTCBTTEEEEEEEEEEEECTTSCEEEEEEEEEEESSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEEeeCCCCccceEEEEEEEEEEECCCCceEEEEEEEEEECCCCcCCHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence            999999999764 59999999999998 5789999999999999988888765   7899999999999999998

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=100.00  E-value=9.4e-43  Score=257.93  Aligned_cols=150  Identities=24%  Similarity=0.406  Sum_probs=137.0

Q ss_pred             CCCCcceEEEEEEEcCCHHHHHHHH-hccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeee
Q 031700            1 MASAGGKLEVELEVKSSADKFWGSI-RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVD   79 (154)
Q Consensus         1 m~~~~~~~~~~~~i~a~~~~vW~~~-~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D   79 (154)
                      |++  ++++.+++|++||++||+++ +||++++|+|+|+.|++|+++||+| ++||||+|+|.+|.+. .++||||+++|
T Consensus         7 Mg~--~~~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGdg-~~Gsir~~~~~~g~~~-~~~kErl~~iD   82 (165)
T 3ie5_A            7 MAA--YTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDG-GVGTVTKITFVDGHPL-TYMLHKFDEID   82 (165)
T ss_dssp             CSC--EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSS-STTCEEEEEECTTSSC-CEEEEEEEEEE
T ss_pred             eee--EEEEEEEEecCCHHHHHHHhcCCccccchhhCCcccceEEEecCCC-CCCeEEEEEecCCCCC-ceEEEEEEEEc
Confidence            664  69999999999999999995 9998766999999999999999996 9999999999988753 56999999999


Q ss_pred             CCCcEEEEEEEecCccc-ceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhH---HHHHHHHHHHHHHHHhhCC
Q 031700           80 EANKVVTYKVIDGDLLK-YYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVI---KDFALKNFQEVDDYILKAN  154 (154)
Q Consensus        80 ~~~~~~~Y~~ieg~~~~-~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~---~~~~~~~~k~ie~~l~~~~  154 (154)
                      +++|+++|+++||+++. .|++|.++++|.+.++||+++|+++|++.++..++|+.+   ++++.+|+|+||+||++||
T Consensus        83 ~~~~~~~Y~iieG~~l~~~~~~y~~~i~v~~~~ggs~vkwt~~y~~~~~~~~~~e~~k~~~~~~~~~~K~ie~yllanp  161 (165)
T 3ie5_A           83 AANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVGGGSKGKITVTYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANP  161 (165)
T ss_dssp             GGGTEEEEEEEEEGGGTTTEEEEEEEEEEEEETTEEEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hhcCEEEEEEecCCCCccceEEEEEEEEEEeCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            99999999999999764 699999999999447889999999999999988888875   6899999999999999998

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=100.00  E-value=8e-42  Score=250.60  Aligned_cols=148  Identities=22%  Similarity=0.424  Sum_probs=127.8

Q ss_pred             CCCCcceEEEEEEEcCCHHHHHHH-HhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCC-CceeeeeeEEEEee
Q 031700            1 MASAGGKLEVELEVKSSADKFWGS-IRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADG-SPIVKVSTEKIENV   78 (154)
Q Consensus         1 m~~~~~~~~~~~~i~a~~~~vW~~-~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G-~~~~~~~kErl~~~   78 (154)
                      |+   ++++.+++|++||++||++ ++||++++|+|+|+.+++|+++||+| ++||||+|+|.+| .+  .++||||+++
T Consensus         1 M~---~~~~~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGdg-g~Gsvr~~~~~~g~~~--~~~kErl~~i   74 (155)
T 2flh_A            1 MV---KEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDG-GVGTILIFNFLPEVSP--SYQREEITEF   74 (155)
T ss_dssp             CC---EEEEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECSS-STTCEEEEEECTTSSS--CEEEEEEEEE
T ss_pred             CC---cEEEEEEEecCCHHHHHHHHhcccccccchhccccceEEEEEcCCC-CCCeEEEEEeeCCCCC--cEEEEEEEEE
Confidence            66   7999999999999999999 69998655999999999999999997 8999999999988 44  4599999999


Q ss_pred             eCCCcEEEEEEEecCccc-ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhHH--HHHHHHHHHHHHHHhhCC
Q 031700           79 DEANKVVTYKVIDGDLLK-YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVIK--DFALKNFQEVDDYILKAN  154 (154)
Q Consensus        79 D~~~~~~~Y~~ieg~~~~-~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~~--~~~~~~~k~ie~~l~~~~  154 (154)
                      |+++|+++|+++||+++. .|++|.++++|.|. ++||+++|+++|++.++..+++..++  +.+.+|+|+||+||++||
T Consensus        75 D~~~~~~~y~iieg~~l~~~~~~~~~~i~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~~  154 (155)
T 2flh_A           75 DESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLSNGS  154 (155)
T ss_dssp             ETTTTEEEEEEEEEGGGGTTCSEEEEEEEEEEEETTEEEEEEEEEEEC-------CCHHHHHHHHHHHHHHHHHHHC---
T ss_pred             eCCCCEEEEEEEeccccccCceEEEEEEEEEECCCCCEEEEEEEEEEECCCCccChhHhhhHHHHHHHHHHHHHHHhhCC
Confidence            999999999999999753 59999999999998 57899999999999998877788899  999999999999999987

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=100.00  E-value=1.1e-40  Score=244.91  Aligned_cols=147  Identities=23%  Similarity=0.322  Sum_probs=136.1

Q ss_pred             cceEEEEEEEcCCHHHHHHHHh-ccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCc
Q 031700            5 GGKLEVELEVKSSADKFWGSIR-DSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         5 ~~~~~~~~~i~a~~~~vW~~~~-d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~   83 (154)
                      .++++.+++|++||++||++++ ||++++|+|+| .|++|+++||+| ++||||.|+|.+|.+. +++||||+++|+++|
T Consensus         2 ~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~-~i~s~~i~eG~g-~~Gsir~~~~~~G~~~-~~~kErl~~~D~~~~   78 (157)
T 1tw0_A            2 VFVFRDETSSSVAPAKLYKALTKDSDTIAQKIDG-PIQSIELVEGNG-GVGTIKKITANEGDKT-SFVLQKVDAIDEANL   78 (157)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHHTGGGGGGGSCS-SEEEEEEEESSS-STTCEEEEEEEETTEE-EEEEEEEEEEETTTT
T ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcchhhhhHHh-hccEEEEEeCCC-CCCeEEEEEeeCCCcc-ceEEEEEEEEeccCC
Confidence            3689999999999999999998 99878899995 999999999987 8999999999988764 569999999999999


Q ss_pred             EEEEEEEecCccc-ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhH---HHHHHHHHHHHHHHHhhCC
Q 031700           84 VVTYKVIDGDLLK-YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVI---KDFALKNFQEVDDYILKAN  154 (154)
Q Consensus        84 ~~~Y~~ieg~~~~-~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~---~~~~~~~~k~ie~~l~~~~  154 (154)
                      +++|+++||+.+. .|++|.++++|.|. ++||+++|+++|++.++..++|+.+   ++.+.+|+|+||+||++||
T Consensus        79 ~~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p  154 (157)
T 1tw0_A           79 GYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANP  154 (157)
T ss_dssp             EEEEEEEECTTSCTTEEEEEEEEEEEECSSSSEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             EEEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999765 59999999999999 4689999999999999988888887   7899999999999999998

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=100.00  E-value=3.3e-41  Score=247.91  Aligned_cols=149  Identities=23%  Similarity=0.371  Sum_probs=136.9

Q ss_pred             CCCCcceEEEEEEEcCCHHHHHHHHh-ccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeee
Q 031700            1 MASAGGKLEVELEVKSSADKFWGSIR-DSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVD   79 (154)
Q Consensus         1 m~~~~~~~~~~~~i~a~~~~vW~~~~-d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D   79 (154)
                      |+.  ++++.+++|++||++||++++ ||++++|+|+| .|++|+++||+| ++||||.|+|.+|.+. +++||||+++|
T Consensus         1 M~~--~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~-~i~s~~i~eGdg-g~Gsir~~~~~~g~~~-~~~kErl~~~D   75 (158)
T 2qim_A            1 MGV--FTFQDEYTSTIAPAKLYKALVTDADIIIPKAVE-TIQSVEIVEGNG-GPGTIKKLTFIEGGES-KYVLHKIEAID   75 (158)
T ss_dssp             -CE--EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCT-TEEEEEEEESSS-STTCEEEEEEEETTEE-EEEEEEEEEEE
T ss_pred             CCC--EEEEEEEEecCCHHHHHHHHhcCccchhhhHHh-hCcEEEEEecCC-CCCeEEEEEEcCCCcc-eeEEEEEEEEe
Confidence            774  599999999999999999998 99877899995 999999999987 8999999999988764 56999999999


Q ss_pred             CCCcEEEEEEEecCccc-ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhH---HHHHHHHHHHHHHHHhhCC
Q 031700           80 EANKVVTYKVIDGDLLK-YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVI---KDFALKNFQEVDDYILKAN  154 (154)
Q Consensus        80 ~~~~~~~Y~~ieg~~~~-~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~---~~~~~~~~k~ie~~l~~~~  154 (154)
                      +++++++|+++||+++. .|++|.++++|.|. ++||+++|+++|++.++..++|+.+   ++.+.+|+|+||+||++||
T Consensus        76 ~~~~~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p  155 (158)
T 2qim_A           76 EANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHP  155 (158)
T ss_dssp             GGGTEEEEEEEEESSCCCSEEEEEEEEEEEECSTTCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEEEEeccCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999765 59999999999999 4689999999999999988888887   7899999999999999998

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=100.00  E-value=3.9e-41  Score=247.70  Aligned_cols=148  Identities=23%  Similarity=0.393  Sum_probs=137.1

Q ss_pred             cceEEEEEEEcCCHHHHHHHHh-ccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCc
Q 031700            5 GGKLEVELEVKSSADKFWGSIR-DSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         5 ~~~~~~~~~i~a~~~~vW~~~~-d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~   83 (154)
                      .++++.+++|++||++||++++ ||++++|+|+|+.|++|+++||++ ++||||+|+|.+|.+. ++++|||+.+|++++
T Consensus         2 ~~~~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdg-g~Gsvr~~~~~~G~~~-~~~kErl~~~D~~~~   79 (159)
T 1e09_A            2 VFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDG-GPGTIKKITFGEGSQY-GYVKHKIDSIDKENY   79 (159)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSS-STTCEEEEEECCSSSC-EEEEEEEEEEETTTT
T ss_pred             cEEEEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCC-CCceEEEEEecCCCCc-eEEEEEEEEEcCCCC
Confidence            3689999999999999999998 997778999999999999999987 8999999999988654 569999999999999


Q ss_pred             EEEEEEEecCccc-ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhH---HHHHHHHHHHHHHHHhhCC
Q 031700           84 VVTYKVIDGDLLK-YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVI---KDFALKNFQEVDDYILKAN  154 (154)
Q Consensus        84 ~~~Y~~ieg~~~~-~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~---~~~~~~~~k~ie~~l~~~~  154 (154)
                      +++|+++||+++. .|++|.++++|.|. ++||+++|+++|++.++..++|+.+   ++.+.+|+|+||+||++||
T Consensus        80 ~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~~  155 (159)
T 1e09_A           80 SYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHP  155 (159)
T ss_dssp             EEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEEEEecccCcccceEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            9999999999765 69999999999998 4689999999999999988888877   7899999999999999998

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=100.00  E-value=2.9e-41  Score=250.13  Aligned_cols=151  Identities=35%  Similarity=0.602  Sum_probs=138.4

Q ss_pred             CCCCcceEEEEEEEcCCHHHHHHHH-hccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeee
Q 031700            1 MASAGGKLEVELEVKSSADKFWGSI-RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVD   79 (154)
Q Consensus         1 m~~~~~~~~~~~~i~a~~~~vW~~~-~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D   79 (154)
                      |+ +.|+++.+++|++||++||+++ +|| +.+|+|+|+.|++|+++||+++++||||.|+|.+|++. .++||||+++|
T Consensus        13 ~~-~~~k~~~ev~i~apa~kvw~~~~~d~-~~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~~-~~~kErl~~iD   89 (166)
T 2i9y_A           13 SS-LVGKLETDVEIKASADKFHHMFAGKP-HHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEA-KVAKERIEAVE   89 (166)
T ss_dssp             SS-SEEEEEEEEEESSCHHHHHGGGSSCS-SCCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTEE-EEEEEEEEEEE
T ss_pred             cC-CccEEEEEEEecCCHHHHHHHHhccc-ccccccccccceEEEEEcCCCCCCCeEEEEEEecCCCc-eEEEEEEEEEe
Confidence            44 5899999999999999999996 577 57999999999999999999559999999999966543 56999999999


Q ss_pred             CCCcEEEEEEEecCcccceeEEEEEEEEeeC--CCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700           80 EANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN  154 (154)
Q Consensus        80 ~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~--~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~  154 (154)
                      +++++|+|+++||+++..|++|.++++|.|.  ++||+++|+++|++.++..++|..+++++..|+|+||+||++||
T Consensus        90 ~~~~~~~y~iieGd~~~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~~~~~~~p~~~~~~~~~~~k~ie~~l~~~~  166 (166)
T 2i9y_A           90 PDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHPETLLQFCVEVSKEIDEHLLAEE  166 (166)
T ss_dssp             TTTTEEEEEECCTTGGGTEEEEEEEEEEEEEEETTEEEEEEEEEEEESSTTTCCTHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             ccCcEEEEEEEeCCCCCCeeEEEEEEEEEECCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999986579999999999998  45899999999999999988999999999999999999999997

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=100.00  E-value=1.7e-40  Score=243.33  Aligned_cols=148  Identities=31%  Similarity=0.509  Sum_probs=132.3

Q ss_pred             CCCCcceEEEEEEEcCCHHHHHHHH-hccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeee
Q 031700            1 MASAGGKLEVELEVKSSADKFWGSI-RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVD   79 (154)
Q Consensus         1 m~~~~~~~~~~~~i~a~~~~vW~~~-~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D   79 (154)
                      |+.  ++++.|+++++||+|+|+++ +|+++++|+|+|+.+++++ +||+| ++|+||.|+|..|++. .++||||+++|
T Consensus         1 mgv--~~~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~-veGdg-~~Gsir~~t~~~g~~~-~~~kErle~iD   75 (154)
T 2wql_A            1 MGA--QSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVE-VKGDG-GAGTVRIITLPEGSPI-TTMTVRTDAVN   75 (154)
T ss_dssp             --C--CEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEE-EESSS-STTCEEEEECCTTCSC-CEEEEEEEEEE
T ss_pred             CCC--eEEEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEE-EECCC-CCCeEEEEEEcCCCCc-eEEEEEEEEEe
Confidence            664  59999999999999999875 8998778999999999999 68987 8999999999977654 57999999999


Q ss_pred             CCCcEEEEEEEecCcc-cceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhHHHH---HHHHHHHHHHHHhhC
Q 031700           80 EANKVVTYKVIDGDLL-KYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVIKDF---ALKNFQEVDDYILKA  153 (154)
Q Consensus        80 ~~~~~~~Y~~ieg~~~-~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~~~~---~~~~~k~ie~~l~~~  153 (154)
                      +++|+++|+++||+.+ ..|++|..++++.|. ++||.++|+++|++.++..++|+.+++.   +.+++|+||+||+||
T Consensus        76 ~~~~~~~y~iieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~t~~Y~~~~~~~~~ee~~~~~~~~~~~~~KaiEayLlan  154 (154)
T 2wql_A           76 KEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN  154 (154)
T ss_dssp             TTTTEEEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhCEEEEEEEeccccccceEEEEEEEEEeeCCCCcEEEEEEEEEEECCCCCCCHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            9999999999999965 469999999999999 5789999999999999988888877644   789999999999998

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=100.00  E-value=1.6e-40  Score=243.46  Aligned_cols=146  Identities=24%  Similarity=0.381  Sum_probs=134.9

Q ss_pred             cceEEEEEEEcCCHHHHHHHHh-ccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCc
Q 031700            5 GGKLEVELEVKSSADKFWGSIR-DSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         5 ~~~~~~~~~i~a~~~~vW~~~~-d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~   83 (154)
                      .++++.+++|++||++||++++ ||++++|+|+| .|++|+++||+| ++||||.|+|.+|.+. +++||||+++|+++|
T Consensus         2 ~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~-~i~s~~i~eG~g-~~Gsir~~~~~~G~~~-~~~kErl~~~D~~~~   78 (155)
T 1icx_A            2 IFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIE-PIQSVEIVEGNG-GPGTIKKIIAIHDGHT-SFVLHKLDAIDEANL   78 (155)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHST-TEEEEEEEESSS-STTCEEEEEEESSSSE-EEEEEEEEEEEGGGT
T ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcchhcchhhh-hccEEEEEecCC-CCCeEEEEEEecCCcc-eeEEEEEEEEeccCC
Confidence            3689999999999999999998 99877899995 999999999987 8999999999988764 569999999999999


Q ss_pred             EEEEEEEecCccc-ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhH---HHHHHHHHHHHHHHHhhCC
Q 031700           84 VVTYKVIDGDLLK-YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVI---KDFALKNFQEVDDYILKAN  154 (154)
Q Consensus        84 ~~~Y~~ieg~~~~-~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~---~~~~~~~~k~ie~~l~~~~  154 (154)
                      +++|+++||+.+. .|++|.++++|.|. ++||+++|+++|++.++. ++|+.+   ++++..|+|+||+||++||
T Consensus        79 ~~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~-~~~~~~~~~~~~~~~~~k~ie~yll~~p  153 (155)
T 1icx_A           79 TYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDV-LSETVRDQAKFKGLGLFKAIEGYVLAHP  153 (155)
T ss_dssp             EEEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSS-CCHHHHTTHHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999765 59999999999998 468999999999999998 888777   8999999999999999998

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=100.00  E-value=3.6e-40  Score=250.67  Aligned_cols=148  Identities=19%  Similarity=0.345  Sum_probs=133.5

Q ss_pred             CcceEEEEEEEcCCHHHHHHHH-h-ccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCC
Q 031700            4 AGGKLEVELEVKSSADKFWGSI-R-DSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEA   81 (154)
Q Consensus         4 ~~~~~~~~~~i~a~~~~vW~~~-~-d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~   81 (154)
                      +.|+++.+++|++||++||+++ + ||++++|+|+|+.+++|+++ |+| ++||||.|+|.+|.+. .++||||+++|++
T Consensus        27 ~~g~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-GdG-g~GsIR~lt~~~G~~~-~~vkErle~iDde  103 (201)
T 2vq5_A           27 VTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDG-GVGTILDMTFVPGEFP-HEYKEKFILVDNE  103 (201)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SSS-STTCEEEEECCTTCSS-CEEEEEEEEEETT
T ss_pred             cceEEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cCC-CCCeEEEEEecCCCcc-cEEEEEEEEEchh
Confidence            5789999999999999999995 7 99876799999999999999 987 8999999999988643 4699999999999


Q ss_pred             CcEEEEEEEecCcc-cceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCC--CCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700           82 NKVVTYKVIDGDLL-KYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDD--VPDPSVIKDFALKNFQEVDDYILKAN  154 (154)
Q Consensus        82 ~~~~~Y~~ieg~~~-~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~--~~~~~~~~~~~~~~~k~ie~~l~~~~  154 (154)
                      +|+++|+++||+.+ ..|++|.++++|.|. ++||+++|+++|++.++.  .+++..+++.+.+|+|+||+||++||
T Consensus       104 ~~~~sYsiieGd~l~~~~~~y~~tikv~p~~dggs~vkWt~~ye~~~~~~~~~e~~~~~~~~~~~~KaiE~yLlanp  180 (201)
T 2vq5_A          104 HRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVKPEFVKIVEPLITTGPLAAMADAISKLVLEHK  180 (201)
T ss_dssp             TTEEEEEEEEEGGGGTTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGHHHHTTTCCSHHHHHHHHHHHHHHHSCC
T ss_pred             hCEEEEEEEecCccccceeEEEEEEEEEECCCCCeEEEEEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999976 369999999999998 578999999999999886  23455778999999999999999998

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.97  E-value=4.8e-30  Score=181.08  Aligned_cols=119  Identities=36%  Similarity=0.612  Sum_probs=107.1

Q ss_pred             CCCCcceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeC
Q 031700            1 MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE   80 (154)
Q Consensus         1 m~~~~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~   80 (154)
                      || +.|+++.+++|++||+++|++++++ +++| |.+               +          |.       +||+++|+
T Consensus         1 m~-~~g~~~~e~~i~~~a~k~w~~~~~~-~~~p-~g~---------------~----------G~-------~~ie~iD~   45 (122)
T 1vjh_A            1 ST-LKGALSVKFDVKCPADKFFSAFVED-TNRP-FEK---------------N----------GK-------TEIEAVDL   45 (122)
T ss_dssp             CC-SEEEEEEEEEESSCHHHHHHHHHHH-TTSC-SST---------------T----------CE-------EEEEEEET
T ss_pred             CC-CCcEEEEEEEecCCHHHHHHHHhhc-ccCC-ccC---------------C----------Cc-------cEEEEEec
Confidence            67 4799999999999999999999998 6787 422               1          21       18899999


Q ss_pred             CCcEEEEEEEecCcccceeEEEEEEEEeeC--CCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700           81 ANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN  154 (154)
Q Consensus        81 ~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~--~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~  154 (154)
                      ++++++|+++||+++..|++|.++++|.|.  ++||+++|+++|++.++..++|+.+++++.+|+|+||+||++||
T Consensus        46 ~~~~~~y~iieGd~~~~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yll~~p  121 (122)
T 1vjh_A           46 VKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIIDESVKYFKKLDEAILNFK  121 (122)
T ss_dssp             TTTEEEEEEECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ccCEEEEEEEEccccccEEEEEEEEEEEEecCCCCeEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence            999999999999987779999999999999  78899999999999999999999999999999999999999998

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=99.97  E-value=2.5e-30  Score=197.15  Aligned_cols=115  Identities=19%  Similarity=0.313  Sum_probs=97.6

Q ss_pred             cceEEEEE--EEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCC
Q 031700            5 GGKLEVEL--EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         5 ~~~~~~~~--~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~   82 (154)
                      ++++...+  +|+||+++||++++||+ .+++|+| .|++|++++|+++++|+||+|+|.+|.+. .+++|||+++|+++
T Consensus        51 ~~~c~~~v~~~I~ApadkVW~lv~Df~-~l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G~p~-~~vkErL~~lDde~  127 (208)
T 3jrs_A           51 NGRCSSLLAQRIHAPPETVWSVVRRFD-RPQIYKH-FIKSCNVSEDFEMRVGCTRDVNVISGLPA-NTSRERLDLLDDDR  127 (208)
T ss_dssp             TTEEEEEEEEEESSCHHHHHHHHTCTT-CGGGTCT-TEEEEECCTTCCCSTTCEEEEEECTTSSC-CEEEEEEEEEETTT
T ss_pred             CCeEeEEEEEEEeCCHHHHHHHHhCcC-ChhHccc-cceEEEEecCCCCCCCeEEEEEecCCCcc-ceEEEEEEEEeccC
Confidence            45555555  79999999999999997 5899999 89999999998679999999999988643 46999999999999


Q ss_pred             cEEEEEEEecCcccceeEEEEEEEEeeC--CCCeEEEEEEEEEe
Q 031700           83 KVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKWACEFEK  124 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~~~~~~~~t~~v~~~--~~~s~v~Wt~~~e~  124 (154)
                      |+|+|++++|++  ++++|++|++|.|.  +++|.|+|+++|++
T Consensus       128 ~~~sYsIieG~l--pv~~Y~sti~V~p~~~g~~t~V~Wt~~fes  169 (208)
T 3jrs_A          128 RVTGFSITGGEH--RLRNYKSVTTVHRFEKEEEEERIWTVVLES  169 (208)
T ss_dssp             TEEEEEEEESSS--SCTTCEEEEEEEEEEC-----CEEEEEEEE
T ss_pred             CEEEEEEeeCCc--ceeeEEEEEEEEEccCCCccEEEEEEEEEE
Confidence            999999999986  47899999999996  46899999999995

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=99.97  E-value=1.6e-29  Score=189.57  Aligned_cols=119  Identities=20%  Similarity=0.312  Sum_probs=102.6

Q ss_pred             cceEEEEE--EEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCC
Q 031700            5 GGKLEVEL--EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         5 ~~~~~~~~--~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~   82 (154)
                      ++++...+  +|+||+++||++++||+ .+++|+| .|++| .++|+++++|+||.++|.+|.+. .+++|||+++|+++
T Consensus        24 ~~~~~~~v~~~I~Apa~~VW~~v~df~-~l~~w~P-~V~s~-~~eG~~ggvGsvR~lt~~~G~p~-~~vkErL~~~D~~~   99 (183)
T 3rt2_A           24 ESQCSSTLVKHIKAPLHLVWSIVRRFD-EPQKYKP-FISRC-VVQGKKLEVGSVREVDLKSGLPA-TKSTEVLEILDDNE   99 (183)
T ss_dssp             TTEEEEEEEEEESSCHHHHHHHHTCTT-CGGGTCT-TEEEE-EESSSCCCTTCEEEEEECCSSTT-CEEEEEEEEEETTT
T ss_pred             CCceEEEEEEEEeCCHHHHHHHHhCcC-chhhcCc-cceEE-EeeCCCCCCCcEEEEEeCCCCcc-ceEEEEEEEEECCC
Confidence            45666555  89999999999999996 5899999 89999 57995559999999999988543 35899999999999


Q ss_pred             cEEEEEEEecCcccceeEEEEEEEEeeCC--C--CeEEEEEEEEEeCCCCC
Q 031700           83 KVVTYKVIDGDLLKYYKAFKGIVSVNPKG--E--GSLVKWACEFEKASDDV  129 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~--~--~s~v~Wt~~~e~~~~~~  129 (154)
                      |+|+|++++|++  .|++|.+|++|.|.+  +  +|.|+|+++|++.++..
T Consensus       100 ~~~sY~Iieg~l--p~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g~~  148 (183)
T 3rt2_A          100 HILGIRIVGGDH--RLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNT  148 (183)
T ss_dssp             TEEEEEEEEESC--SCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTTCC
T ss_pred             CEEEEEEecCCc--ceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCCCC
Confidence            999999999986  489999999999973  3  69999999999876643

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=99.97  E-value=1.5e-29  Score=193.22  Aligned_cols=114  Identities=18%  Similarity=0.290  Sum_probs=100.3

Q ss_pred             cceEEEEE--EEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCC
Q 031700            5 GGKLEVEL--EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         5 ~~~~~~~~--~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~   82 (154)
                      ++++...+  +|+||+++||++++||+ .+++|.| .|++|++++|+++++|+||.|+|.+|.+. .+++|||+++|+++
T Consensus        47 ~~~c~~~v~~~I~ApadkVW~lv~dF~-~l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G~p~-~~vkErL~~lDd~~  123 (211)
T 3k3k_A           47 PGSCSSLHAQRIHAPPELVWSIVRRFD-KPQTYKH-FIKSCSVEQNFEMRVGCTRDVIVISGLPA-NTSTERLDILDDER  123 (211)
T ss_dssp             TTEEEEEEEEEESSCHHHHHHHHTCTT-CGGGTCS-SEEEEECCTTCCCCTTCEEEEEESSSSSC-EEEEEEEEEEETTT
T ss_pred             CCeEeEEEEEEEcCCHHHHHHHHhCcC-ChhHcCc-cceEEEEecCCCCCCCcEEEEEecCCCcc-ceEEEEEEEEeccC
Confidence            45555555  79999999999999996 5899999 89999999998779999999999998654 46999999999999


Q ss_pred             cEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEe
Q 031700           83 KVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEK  124 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~  124 (154)
                      |+|+|++++|++  ++++|.+|++|.|.++++ |+|+++|++
T Consensus       124 ~~~sYsIieg~l--pv~~Y~sti~V~p~~~gg-V~Wt~~fes  162 (211)
T 3k3k_A          124 RVTGFSIIGGEH--RLTNYKSVTTVHRFEKEN-RIWTVVLES  162 (211)
T ss_dssp             TEEEEEEEEETT--GGGTCEEEEEEEEEEETT-EEEEEEEEE
T ss_pred             CEEEEEEeecCc--ceeEEEEEEEEEECCCCC-EEEEEEEEE
Confidence            999999999986  489999999999985444 999999995

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=99.96  E-value=2.5e-28  Score=184.14  Aligned_cols=120  Identities=23%  Similarity=0.344  Sum_probs=96.3

Q ss_pred             cceEEEEE--EEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCC
Q 031700            5 GGKLEVEL--EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         5 ~~~~~~~~--~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~   82 (154)
                      ++++...+  +|++|+++||++++||++ ++.|.| .|++|++++|++ ++|+||+|+|.+|.+. .++||||+++|+++
T Consensus        32 ~~~~~~~~~~~I~Apa~~vW~lv~df~~-~~~w~p-~I~s~e~~eGdg-~vGsVR~~t~~~G~p~-~~vkErL~~iD~~~  107 (190)
T 3kl1_A           32 PTTCTSLITQRIHAPASVVWPLIRRFDN-PERYKH-FVKRCRLISGDG-DVGSVREVTVISGLPA-STSTERLEFVDDDH  107 (190)
T ss_dssp             TTEEEEEEEEEESSCHHHHHHHHHCTTC-GGGTCS-SEEEEEEEESSS-STTCEEEEEECSSSSC-EEEEEEEEEEETTT
T ss_pred             CCceeEEEEEEecCCHHHHHHHHhCCCC-hhHccc-ccCEEEEEcCCC-CCCeEEEEEecCCCcc-ceEEEEEEEEeccC
Confidence            45666666  899999999999999975 545555 999999999996 8999999999988654 46999999999999


Q ss_pred             cEEEEEEEecCcc-cceeEEEEEEEEee--C-CCCeEEEEEEEEEeCCCC
Q 031700           83 KVVTYKVIDGDLL-KYYKAFKGIVSVNP--K-GEGSLVKWACEFEKASDD  128 (154)
Q Consensus        83 ~~~~Y~~ieg~~~-~~~~~~~~t~~v~~--~-~~~s~v~Wt~~~e~~~~~  128 (154)
                      |+|+|++++|+++ ..|+++...+++.+  . +++|.|+|+++|++..+.
T Consensus       108 ~~~sY~iieG~~~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~g~  157 (190)
T 3kl1_A          108 RVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGN  157 (190)
T ss_dssp             TEEEEEEEEESSSCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCTTC
T ss_pred             CEEEEEEEecCCccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCCCC
Confidence            9999999999873 33554444444443  4 457999999999975553

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.96  E-value=4.9e-28  Score=175.34  Aligned_cols=130  Identities=18%  Similarity=0.368  Sum_probs=107.5

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      +++.+++|+||+++||++++||. .+|+|+| .|++|++++|     |++|.+++.+|..    ++|||+++|+++++++
T Consensus         3 ~v~~si~I~Ap~~~VW~~l~d~~-~~~~w~p-~v~~~~~~~G-----G~vR~~~~~~G~~----~~Erl~~~D~~~~~~~   71 (146)
T 3f08_A            3 HTTTSMEIFGSTEQVWQLIGGFN-SLPDWLP-YIPSSKLTEG-----GRVRHLANPDGET----IIERLEVFNDKERYYT   71 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHCSTT-CHHHHCT-TCCEEEEEGG-----GTEEEEECTTSCE----EEEEEEEEETTTTEEE
T ss_pred             EEEEEEEEeCCHHHHHHHHhccc-cHHHhCC-CeEEEEEeCC-----CeEEEEEeCCCCE----EEEEEEEEeCCCCEEE
Confidence            58999999999999999999996 5899999 7999998865     8999999988853    8999999999999999


Q ss_pred             EEEEecCcccceeEEEEEEEEee-C-CCCeEEEEEEEEEeCCCCCCC--hhhHHHHHHHHHHHHHHHH
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNP-K-GEGSLVKWACEFEKASDDVPD--PSVIKDFALKNFQEVDDYI  150 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~-~-~~~s~v~Wt~~~e~~~~~~~~--~~~~~~~~~~~~k~ie~~l  150 (154)
                      |++++|++  ++++|.++++|.| . ++||+|+|+++|+|.+. ..+  -..+...+...+++|.+.+
T Consensus        72 y~iv~g~~--~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p~g~-~~~~~~~~~~~~~~~~L~~Lk~~~  136 (146)
T 3f08_A           72 YSIMNAPF--PVTNYLSTIQVKEGTESNTSLVEWSGTFTPVAV-SDEEAINLVHGIYSDGLKALQHAF  136 (146)
T ss_dssp             EEEEECSS--SEEEEEEEEEEEECSSTTCEEEEEEEEEEESSS-CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEecCCC--ceeEEEEEEEEEEecCCCcEEEEEEEEEEeCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999975  3899999999999 4 67899999999998332 111  1122344566667776665

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=99.96  E-value=3e-28  Score=185.26  Aligned_cols=119  Identities=23%  Similarity=0.346  Sum_probs=105.0

Q ss_pred             CcceEEEEE--EEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCC
Q 031700            4 AGGKLEVEL--EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEA   81 (154)
Q Consensus         4 ~~~~~~~~~--~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~   81 (154)
                      .+++++.++  +|+|||++||++++||+ .+++|.| .|++|+ ++|++ ++|+||.|+|.+|.+. .+++|||+++|++
T Consensus        48 ~~~k~~~~V~~~I~ApadkVW~lV~Df~-~l~kW~P-~V~s~e-veGdg-~vGsVR~vt~~~G~p~-~~vkErL~~lDde  122 (205)
T 3oqu_A           48 RENQCTSALVKHIKAPLHLVWSLVRRFD-QPQKYKP-FVSRCT-VIGDP-EIGSLREVNVKSGLPA-TTSTERLELLDDE  122 (205)
T ss_dssp             CTTEEEEEEEEEESSCHHHHHHHHTCTT-CGGGTCT-TEEEEE-CCSSC-CTTCEEEEEECTTSSC-SEEEEEEEEEETT
T ss_pred             CCcEEEEEEeeEEcCCHHHHHHHHhCcC-ChhHcCc-cceEEE-eeCCC-CCCcEEEEEEcCCCcc-ceEEEEEEEEECC
Confidence            378999999  99999999999999997 5899999 899998 48875 8999999999988543 4599999999999


Q ss_pred             CcEEEEEEEecCcccceeEEEEEEEEeeCC--C--CeEEEEEEEEEeCCCCC
Q 031700           82 NKVVTYKVIDGDLLKYYKAFKGIVSVNPKG--E--GSLVKWACEFEKASDDV  129 (154)
Q Consensus        82 ~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~--~--~s~v~Wt~~~e~~~~~~  129 (154)
                      +|+|+|++++|++  +|++|.+|++|.|.+  +  +|.+.|+..+++.++..
T Consensus       123 ~~~~sYsIieG~l--pv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~g~t  172 (205)
T 3oqu_A          123 EHILGIKIIGGDH--RLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNT  172 (205)
T ss_dssp             TTEEEEEEEEESS--SCTTCEEEEEEEEECCCC-CEEEEEEEEEEECCTTCC
T ss_pred             CCEEEEEEEecCc--ceeEEEEEEEEEEccCCCCceEEEEEEEeccCCCCCC
Confidence            9999999999986  489999999999984  3  58999999998766643

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.96  E-value=2e-27  Score=174.74  Aligned_cols=134  Identities=17%  Similarity=0.279  Sum_probs=109.5

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCC-CCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDG-KAPGSVRLITYADGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~-~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      +++.+++|+|||++||++++||. .+ +|.|..+++|++++|++ +++|+||.+    |+.    ++|||+++|+++++|
T Consensus         3 ~v~~si~I~Ap~~~VW~~v~Df~-~~-~w~P~v~~s~e~~eg~~~~~vGsvR~~----gg~----v~Erl~~~D~~~~~~   72 (160)
T 3p51_A            3 KVYNSIVVDAPVERVWSRIRNFH-DF-SWAPSLIKSCKKVGGGGGYSVGARRLL----NGE----FLDTLIAYSEIERRI   72 (160)
T ss_dssp             EEEEEEEESSCHHHHHHHHCCTT-CC-TTCTTTCCCEEEESSCCTTCTTCEEEE----TTT----EEEEEEEEETTTTEE
T ss_pred             EEEEEEEECCCHHHHHHHHhCcC-CC-eEccCceEEEEEEecCCCCCCCCEEEE----CCE----EEEEEEEEcCCCcEE
Confidence            68999999999999999999997 57 99997777779999875 589999998    332    899999999999999


Q ss_pred             EEEEEecCccc---ceeEEEEEEEEeeC--CCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 031700           86 TYKVIDGDLLK---YYKAFKGIVSVNPK--GEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        86 ~Y~~ieg~~~~---~~~~~~~t~~v~~~--~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      +|++++|++..   .+++|.++++|.|.  ++||+|+|+++|++.++  .........+...++.|.+.+.+
T Consensus        73 sY~ii~g~l~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~~--~~~~~~~~~~~~~L~~Lk~~~e~  142 (160)
T 3p51_A           73 MYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAST--EAVEYMNTVYRSLLADLAAEFTS  142 (160)
T ss_dssp             EEEEEECSTTSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESCS--HHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             EEEEecCCCcccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCHH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999997632   29999999999997  46799999999999853  11123345567777777776543

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=99.95  E-value=2.2e-26  Score=172.60  Aligned_cols=136  Identities=21%  Similarity=0.307  Sum_probs=104.2

Q ss_pred             EEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEc-CCCCC---CCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEE
Q 031700           10 VELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLE-GDGKA---PGSVRLITYADGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus        10 ~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~e-G~~~~---~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      ...+|+||+++||++++||+ .++.|.| .|++|++.+ |+++.   +|+||.|+|.+|.+. .+++|||+.+|+++|+|
T Consensus        34 ~~~~I~Ap~d~VWalVrdF~-~p~~w~p-~V~s~~~~e~Gdg~~~~~vGsVR~ltl~~G~P~-~~i~ErL~~lDde~~~~  110 (189)
T 3oji_A           34 IAHRVDAPAHAIWRFVRDFA-NPNKYKH-FIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPA-STSVEILEVLDEEKRIL  110 (189)
T ss_dssp             EEEEESSCHHHHHHHHSCTT-CGGGTCT-TEEEEEECCC----CCCSTTCEEEEEECSSSSB-SEEEEEEEEEETTTTEE
T ss_pred             EEEEEcCCHHHHHHHHhCCC-ChhhCcc-ccceEEEEecCCCCccCCCCcEEEEEecCCCcC-ceEEEEEEEEeccCCEE
Confidence            45568999999999999996 5889999 899999887 87522   999999999988654 45999999999999999


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeC----CC-----CeEEEEEEEEEeCCCCCCChhhHH----HHHHHHHHHHHHHHhh
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPK----GE-----GSLVKWACEFEKASDDVPDPSVIK----DFALKNFQEVDDYILK  152 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~----~~-----~s~v~Wt~~~e~~~~~~~~~~~~~----~~~~~~~k~ie~~l~~  152 (154)
                      +|+|++|++  .+++|+++++|.|.    ++     +|.+.|+..+++..+..  .+...    ..+..-|++|.+..-+
T Consensus       111 sY~Iieg~~--pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~g~t--~e~~~~~v~~v~~~gL~~L~~~~e~  186 (189)
T 3oji_A          111 SFRVLGGEH--RLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNT--EEDTRMFVDTVVKSNLQNLAVISTA  186 (189)
T ss_dssp             EEEEEECSB--SSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTSC--HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEecCC--ccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999986  47888889999874    22     58899999988665543  22222    2345666666655443

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.93  E-value=2.7e-25  Score=160.26  Aligned_cols=138  Identities=14%  Similarity=0.239  Sum_probs=111.4

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      +++.++.|+||+++||++++|+. .+|+|+| .+++|++++|+++++|++|.+++.+|..    ++|+|+.+|+++++++
T Consensus         3 ~v~~si~I~ap~e~Vw~~l~d~~-~~~~w~p-~v~~~~~~~g~~~~~G~~r~~~~~~G~~----~~e~i~~~d~~~~~~~   76 (151)
T 2le1_A            3 TLRRSVEVAAPAADVWTLVGDFS-AIHRWHP-QVSAPTLRGASPHTPGAERVFGAGTEEE----LVERLVERDESARRLV   76 (151)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTSG-GGGGTCT-TCCCEEEESSCTTSTTCEEEESSSSSSC----EEEEEEEEETTTTEEE
T ss_pred             eEEEEEEecCCHHHHHHHHhCcC-cHHHhcC-CceEEEEECCCCCCCCeEEEEEeCCCCE----EEEEEEEEeCCCCEEE
Confidence            78999999999999999999996 6899999 5899999988756899999999977753    7999999999999999


Q ss_pred             EEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeC-CCCCCC-hhhHHHHHHHHHHHHHHHHhh
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKA-SDDVPD-PSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~-~~~~~~-~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      |++++|++  .+++|.++++|.|. +++|+|+|+.+|++. .+.... -..+...+...+++|.+++.+
T Consensus        77 ~~~~~g~~--~~~~~~~~~~l~~~~~~gt~v~w~~~f~~~p~~~~~~~~~~~~~~~~~~L~~Lk~~~e~  143 (151)
T 2le1_A           77 YTMPDPPF--PITNHRAVLEVVPRDDRHCTVVWTAMFDCSPETARELESVIGDGVFAVGLNALAERYGR  143 (151)
T ss_dssp             EEEEECSS--SEEEEEEEEEEEESSSSCEEEEEEEEEEECHHHHHHHHHHTTTTHHHHHHHHHHHHTTT
T ss_pred             EEEecCCC--CceeEEEEEEEEECCCCcEEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999874  38999999999996 678999999999973 111000 001124566777777776543

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.69  E-value=3.5e-15  Score=109.16  Aligned_cols=113  Identities=20%  Similarity=0.399  Sum_probs=88.0

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEE--Ec-CCCceeeeeeEEEEeeeCCC
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLIT--YA-DGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~--~~-~G~~~~~~~kErl~~~D~~~   82 (154)
                      ++++.++.|++|+++||+++.|+. .+|.|+| .+.+++++++++  .+..-+++  .. .|... .|..++  .+|+++
T Consensus         3 ~~v~~si~I~a~~~~V~~lV~Dve-~yP~~~p-~~~~~~vl~~~~--~~~~~rl~~~~~~~G~~~-~~ts~~--~~d~~~   75 (159)
T 3tl1_A            3 GHTDNEITIAAPMELVWNMTNDIE-KWPGLFS-EYASVEVLGRDD--DKVTFRLTMHPDADGKVW-SWVSER--VADPVT   75 (159)
T ss_dssp             SEEEEEEEESSCHHHHHHHHTCGG-GHHHHCS-SEEEEEEEEECS--SEEEEEEEECCCTTSCCC-EEEEEE--EEETTT
T ss_pred             CeeEEEEEecCCHHHHHHHHHhHH-Hhhhhhh-CceEEEEEecCC--CEEEEEEEEEeccCceEE-EEEEEE--EEcCCC
Confidence            489999999999999999999996 7999999 677888887653  23333344  33 55432 333333  488999


Q ss_pred             cEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCC
Q 031700           83 KVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDD  128 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~  128 (154)
                      ++|.|+.++.++   ++++.++++|.|.++||.|+|+.+|+..++.
T Consensus        76 ~~I~~~~~~~gP---f~~l~g~W~f~p~~~gt~V~~~~df~~~~~~  118 (159)
T 3tl1_A           76 RTVRAQRVETGP---FQYMNIVWEYAETAEGTVMRWTQDFAMKPDA  118 (159)
T ss_dssp             TEEEEEESSCTT---EEEEEEEEEEEEETTEEEEEEEEEEEECTTC
T ss_pred             CEEEEEEccCCC---hhhccCEEEEEECCCCEEEEEEEEEEecCCC
Confidence            999999884334   6899999999999668999999999998763

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.68  E-value=6e-15  Score=102.92  Aligned_cols=135  Identities=15%  Similarity=0.236  Sum_probs=98.9

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      +++.++.|++|+++||+++.|+. .+|+|+| .+.+++++++++  .|....+++. .|...  .+..++. .+++++++
T Consensus         3 ~~~~~~~i~ap~~~V~~~l~d~~-~~~~w~p-~~~~~~~~~~~~--~g~~~~~~~~~~g~~~--~~~~~~~-~~~~~~~i   75 (147)
T 2d4r_A            3 EVRAERYIPAPPERVYRLAKDLE-GLKPYLK-EVESLEVVAREG--ARTRSRWVAVAMGKKV--RWLEEEE-WDDENLRN   75 (147)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHH-HHGGGCT-TEEEEEEEEEET--TEEEEEEEEEETTEEE--EEEEEEE-EETTTTEE
T ss_pred             eEEEEEEeCCCHHHHHHHHhChh-hhhhhcc-cccEEEEEEeCC--CccEEEEEEEeCCceE--EEEEEEE-EcCCCcEE
Confidence            68899999999999999999996 6999999 678888876542  3566666665 44332  1455555 45788999


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCC--h----hhHHHHHHHHHHHHHHHHhh
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPD--P----SVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~--~----~~~~~~~~~~~k~ie~~l~~  152 (154)
                      .|++.+|++    +.+.+++++.|.++||+|+|+.+|++..+....  .    ..+...+..++++|++++.+
T Consensus        76 ~~~~~~g~~----~~~~~~~~~~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~  144 (147)
T 2d4r_A           76 RFFSPEGDF----DRYEGTWVFLPEGEGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLA  144 (147)
T ss_dssp             EEEEEEESC----SEEEEEEEEEECSSSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCh----hheEEEEEEEECCCCcEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999998764    567889999999767999999999987543221  1    12225566777777776543

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.66  E-value=8.2e-15  Score=108.17  Aligned_cols=111  Identities=15%  Similarity=0.340  Sum_probs=86.2

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEE-EEE--Ec-CCCceeeeeeEEEEeeeCC
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVR-LIT--YA-DGSPIVKVSTEKIENVDEA   81 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR-~~~--~~-~G~~~~~~~kErl~~~D~~   81 (154)
                      .+++.++.|++|+++||+++.|+. .+|+|+| .+.+++++++++   +.+| .+.  .. +|... .|..++  .+|+.
T Consensus         3 ~~v~~si~I~a~~~~v~~lv~Dv~-~~p~w~p-~~~~~~~~~~~~---~~~~~~l~~~~~~~G~~~-~~ts~~--~~d~~   74 (169)
T 3tvq_A            3 ARTDNSIVVNAPFELVWDVTNDIE-AWPELFS-EYAEAEILRQDG---DGFDFRLKTRPDANGRVW-EWVSHR--VPDKG   74 (169)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCGG-GHHHHCT-TEEEEEEEEEET---TEEEEEEEECCCTTSCCC-EEEEEE--EEEGG
T ss_pred             CeEEEEEEecCCHHHHHHHHHhhh-HHHHHHh-heeEEEEEecCC---CEEEEEEEEEecCCCeEE-EEEEEE--EEcCC
Confidence            379999999999999999999996 7999999 688999888653   2333 233  22 55432 344444  47889


Q ss_pred             CcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCC
Q 031700           82 NKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASD  127 (154)
Q Consensus        82 ~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~  127 (154)
                      .++|.|+.+++++   ++.|.++++|.|.++||.|+|+.+|+..++
T Consensus        75 ~~~I~~~~l~~gP---f~~~~g~W~f~p~~~gt~V~~~~df~~~~~  117 (169)
T 3tvq_A           75 SRTVRAHRVETGP---FAYMNLHWTYRAVAGGTEMRWVQEFDMKPG  117 (169)
T ss_dssp             GTEEEEEESSCTT---EEEEEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             CcEEEEEEcCCCC---hhheeeEEEEEECCCCEEEEEEEEEEecCC
Confidence            9999999765434   689999999999965699999999998765

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.63  E-value=4.6e-14  Score=103.73  Aligned_cols=113  Identities=17%  Similarity=0.253  Sum_probs=88.1

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      +++.++.|++|+++||+++.|+. .+|+|+| .+.++++++++++  +..-.+... +|... . +..++. +|++.++|
T Consensus         6 ~v~~si~I~ap~~~V~~~v~D~~-~~p~~~P-~~~~~~v~~~~~~--~~~~~~~~~~~G~~~-~-~~s~~~-~~~~~~~i   78 (172)
T 3tfz_A            6 HVEHTVTVAAPADLVWEVLADVL-GYADIFP-PTEKVEILEEGQG--YQVVRLHVDVAGEIN-T-WTSRRD-LDPARRVI   78 (172)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCGG-GHHHHCS-SEEEEEEEEEETT--EEEEEEEEEETTEEE-E-EEEEEE-EETTTTEE
T ss_pred             EEEEEEEeCCCHHHHHHHHHhHH-HHHhhCc-ccceEEEEecCCC--EEEEEEEEecCCEEE-E-EEEEEE-EeCCCCEE
Confidence            78999999999999999999996 6999999 7889998876431  222234444 55432 2 334433 78889999


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCC
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDD  128 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~  128 (154)
                      .|++++++.  +++.+.+++++.|. +++|+|+|+.+|+..+..
T Consensus        79 ~~~~~~~~g--pf~~~~g~w~f~~~~~~~t~V~~~~~~~~~~~~  120 (172)
T 3tfz_A           79 AYRQLETAP--IVGHMSGEWRAFTLDAERTQLVLTHDFVTRAAG  120 (172)
T ss_dssp             EEEEEECCT--TEEEEEEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             EEEEeeCCC--ChhhcEEEEEEEECCCCcEEEEEEEEEEEcChh
Confidence            999997543  37899999999998 578999999999987654

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.61  E-value=1.2e-13  Score=100.49  Aligned_cols=105  Identities=12%  Similarity=0.114  Sum_probs=85.5

Q ss_pred             cceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            5 GGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         5 ~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      ..+++.++.|+||+++||+++.|+. ..|.|.| .+.++++ +|.. .+|+.+.++...|..    +.++|+++| +++.
T Consensus        17 ~~~i~~si~I~Appe~VW~~ltD~~-~~~~W~p-~v~~~~~-~G~~-~~G~~~~~~~~~~~~----~~~~v~~~~-p~~~   87 (155)
T 3ijt_A           17 SMKFSFELAVNTKKEDAWTYYSQVN-QWFVWEG-DLEQISL-EGEF-TTGQKGKMKMEDMPE----LAFTLVEVR-ENQC   87 (155)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHHCGG-GGGGTST-TEEEEEE-SSSS-STTCEEEEEETTSCC----EEEEECCCB-TTTE
T ss_pred             cEEEEEEEEEcCCHHHHHHHHhCcc-cccccch-hhEeeec-cCCC-CCCCEEEEEeCCCCc----EEEEEEEEe-CCcE
Confidence            5689999999999999999999996 6999999 6888884 7764 899999998876654    678999996 5566


Q ss_pred             EEEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEE
Q 031700           85 VTYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFE  123 (154)
Q Consensus        85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e  123 (154)
                      ++|...-+     ...|..++++.|. +++|+|+|+.+|+
T Consensus        88 ~~~~~~~p-----~~~~~~~h~l~p~~~ggTrvt~~~~~~  122 (155)
T 3ijt_A           88 FSDLTATP-----FGNVLFEHEILENPDGTISLRHSVSLT  122 (155)
T ss_dssp             EEEEEEET-----TEEEEEEEEEEECTTSCEEEEEEEEES
T ss_pred             EEEEEecC-----CeEEEEEEEEEEcCCCcEEEEEEEEEE
Confidence            88865422     2356677789887 6889999999994

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.47  E-value=4.6e-13  Score=95.55  Aligned_cols=112  Identities=13%  Similarity=0.184  Sum_probs=85.3

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCC--CCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCc
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDG--KAPGSVRLITYA-DGSPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~--~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~   83 (154)
                      +++.++.|++|+++||+++.|+. .+|+|+| .++++++++.++  ++.+....+.+. .|...  .+..|++ +|+.++
T Consensus         3 ~~~~s~~i~ap~~~v~~~v~D~~-~~p~~~p-~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~v~-~~~~~~   77 (148)
T 1t17_A            3 RHVVTKVLPYTPDQLFELVGDVD-AYPKFVP-WITGMRTWNGRVDGAVSTVDAEAQVGFSFLRE--KFATRVR-RDKDAR   77 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHTTTT-CCSSCCS-SCCCCCEEEEEEETTEEEEEEEEECSTTSSCC--EEEEEEE-EETTTC
T ss_pred             EEEEEEEecCCHHHHHHHHHHHh-hHHhhCC-CcCeeEEEEecCCCCCceEEEEEEEEecceeE--EEEEEEE-EcCCCc
Confidence            68899999999999999999996 6999999 577777776321  113455566665 34332  2455656 677777


Q ss_pred             EEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCC
Q 031700           84 VVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASD  127 (154)
Q Consensus        84 ~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~  127 (154)
                      ++.++.++|+    ++.+.+++++.|.+++|+|+++.+|++.+.
T Consensus        78 ~i~~~~~~G~----f~~~~g~w~f~~~~~gt~v~~~~~~~~~~~  117 (148)
T 1t17_A           78 SIDVSLLYGP----FKRLNNGWRFMPEGDATRVEFVIEFAFKSA  117 (148)
T ss_dssp             EEEEEESSTT----SSCEEEEEEEEEETTEEEEEEEEEECCSCH
T ss_pred             EEEEEECCCC----hhccEEEEEEEECCCCeEEEEEEEEEECcH
Confidence            9999999985    467889999999865699999999997643

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.43  E-value=8.1e-12  Score=90.09  Aligned_cols=110  Identities=16%  Similarity=0.263  Sum_probs=80.0

Q ss_pred             CCCCcceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc--CC-CceeeeeeEEEEe
Q 031700            1 MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA--DG-SPIVKVSTEKIEN   77 (154)
Q Consensus         1 m~~~~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G-~~~~~~~kErl~~   77 (154)
                      |+.  -+++.++.|++|+++||+++.|+. .+|+|+| .+.+++.+++.      .-.|++.  .| ...  .+.-+++.
T Consensus         1 ~~~--~~v~~s~~I~ap~e~V~~~~~D~e-~~p~w~p-~~~~v~~~~~~------~~~~~~~~~~G~~~~--~~~~~v~e   68 (155)
T 3ggn_A            1 MGE--TVVRDAVTIGKPAEQLYAVWRDLP-GLPLLMT-HLRSVEVLDDK------RSRWTVEAPAPLGTV--SWEAELTA   68 (155)
T ss_dssp             -----CEEEEEEEESSCHHHHHHHHHCGG-GHHHHST-TCCEEEECSSS------EEEEEEECCTTTCEE--EEEEEEEE
T ss_pred             CCc--cEEEEEEEEcCCHHHHHHHHhCHH-HhHHHhh-hceEEEEecCC------eeEEEEEecCCcceE--EEEEEEEE
Confidence            554  389999999999999999999996 6999999 68899877542      2234443  35 443  25566665


Q ss_pred             eeCCCcEEEEEEEecCcccceeEEEEEEEEeeC-C-CCeEEEEEEEEEeCCC
Q 031700           78 VDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK-G-EGSLVKWACEFEKASD  127 (154)
Q Consensus        78 ~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~-~-~~s~v~Wt~~~e~~~~  127 (154)
                      + +++++|.++.++|+.    ..+.+++++.|. + ++|+|+++++|++.++
T Consensus        69 ~-~p~~~i~~~~~~g~~----~~~~g~~~F~~~~~~~gT~V~~~~~~~~~~~  115 (155)
T 3ggn_A           69 D-EPGKRIAWRSLPGAR----IENSGEVLFRPAPGARGTEVVVRLTYRPPGG  115 (155)
T ss_dssp             E-ETTTEEEEEECTTCS----SCEEEEEEEEECSSSSCEEEEEEEEEC----
T ss_pred             e-cCCCEEEEEECCCCC----cceEEEEEEEECCCCCceEEEEEEEEECCCc
Confidence            5 578889999998864    356778888887 4 5899999999998664

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.35  E-value=6.9e-11  Score=85.05  Aligned_cols=137  Identities=13%  Similarity=0.176  Sum_probs=89.6

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeee--eEEEEeeeCCCcE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVS--TEKIENVDEANKV   84 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~--kErl~~~D~~~~~   84 (154)
                      +++.++.|++|+++||+++.|+. .+|+|+| .+.+++.++|+    +....++...|... ..+  +-++..+|+ .++
T Consensus         4 ~i~~~~~i~ap~e~Vw~~l~D~e-~~~~w~p-~~~~~~~~~~~----~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~   75 (162)
T 2pcs_A            4 NGNGSIELKGTVEEVWSKLMDPS-ILSKCIM-GCKSLELIGED----KYKADLQIGIAAVK-GKYDAIIEVTDIKP-PYH   75 (162)
T ss_dssp             EEEEEEEEESCHHHHHHHHTCHH-HHHHHST-TEEEEEEEETT----EEEEEEEECCGGGC-EEEEEEEEEEEEET-TTE
T ss_pred             EEeeEEEecCCHHHHHHHhcCHH-HHHhhCC-CceEeEEeCCC----eEEEEEEEEeeeEE-EEEEEEEEEEecCC-CcE
Confidence            79999999999999999999996 7999999 57788876542    12333444433211 112  335566664 456


Q ss_pred             EEEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChh-----hHHHHHHHHHHHHHHHHhh
Q 031700           85 VTYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPS-----VIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~-----~~~~~~~~~~k~ie~~l~~  152 (154)
                      +.++....+. .....+.+++++.|. +++|+++|+.+++..+.......     ..+..+.++++++.++|.+
T Consensus        76 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~  148 (162)
T 2pcs_A           76 YKLLVNGEGG-PGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAK  148 (162)
T ss_dssp             EEEEEEEEET-TEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCC-CccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7766642211 123466899999994 67899999999998664311111     1224456777777777754

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.31  E-value=2.1e-10  Score=81.69  Aligned_cols=137  Identities=18%  Similarity=0.197  Sum_probs=85.7

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCc-eeeeeeEEEEeeeCCCcE
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSP-IVKVSTEKIENVDEANKV   84 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~-~~~~~kErl~~~D~~~~~   84 (154)
                      .+++.++.|++|+++||+++.|+. .+++|+| .+.+++ ++|+    +....++...|.. ..-..+-++..+| +.++
T Consensus        13 m~i~~~~~i~ap~e~Vw~~l~D~~-~~~~w~p-~~~~~~-~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~   84 (157)
T 2ns9_A           13 VRYEGSFEVSKTPEEVFEFLTDPK-RFSRAFP-GFKSVE-VEDG----SFTIELRLSLGPLRGDARVRASFEDLE-KPSK   84 (157)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCHH-HHGGGST-TEEEEE-EETT----EEEEEEEEESSSSEEEEEEEEEEEEEE-TTTE
T ss_pred             EEEeeEEEEcCCHHHHHHHHcCHH-HHHhhCC-CceEEE-ECCC----EEEEEEEEEEcceeEEEEEEEEEEecC-CCcE
Confidence            379999999999999999999996 6999999 467777 5442    2222334443321 1101233555665 4567


Q ss_pred             EEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChh-----hHHHHHHHHHHHHHHHHh
Q 031700           85 VTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPS-----VIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~-----~~~~~~~~~~k~ie~~l~  151 (154)
                      +.|+....+....++ +.+++++.|.+++|+++|+.+|+..+.......     .....+.++++++.+++.
T Consensus        85 i~~~~~~~~~~~~~~-~~~~~~l~~~~~gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~e  155 (157)
T 2ns9_A           85 ATVKGSGRGAGSTLD-FTLRFAVEPSGGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELG  155 (157)
T ss_dssp             EEEEEEEECSSEEEE-EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEecCCCccEE-EEEEEEEEeCCCcEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888643222111233 678999999877899999999987653211111     112334556666666654

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=99.25  E-value=5.2e-10  Score=81.19  Aligned_cols=115  Identities=20%  Similarity=0.239  Sum_probs=77.0

Q ss_pred             CC-CCcceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEE---cCC-CceeeeeeEEE
Q 031700            1 MA-SAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY---ADG-SPIVKVSTEKI   75 (154)
Q Consensus         1 m~-~~~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~---~~G-~~~~~~~kErl   75 (154)
                      |+ ...-.++.++.|++|+++||+++.|+. .+|.++|+.+ ..+-. ++    | ..++..   .-| ..+......|+
T Consensus         1 ~~~~~~i~v~~s~~I~ap~e~v~~lv~Dve-~w~~~yp~~~-p~~~~-~~----~-~~~~~~a~l~vg~~~~~~~~~s~~   72 (161)
T 3p9v_A            1 MAITVSIELNRDLEIPASYDEVFDLLADVP-KSASHFPKVD-KLVDL-GN----N-AYRWEMEKVGVDKHAIQSVYACTY   72 (161)
T ss_dssp             -CEEEEEEEEEEEEESSCHHHHHHHHTCHH-HHHTTSTTEE-EEEEE-ET----T-EEEEEECCBSSGGGCBCCEEEEEE
T ss_pred             CcEEEEEEEEEEEEEcCCHHHHHHHHhChh-hhHhhCCCeE-EEEEc-CC----C-ceEEEEEEEeeeeEEEEEEEEEEE
Confidence            45 234568899999999999999999996 5556666332 22211 22    2 223443   222 22111133443


Q ss_pred             EeeeCCCcEEEEEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCC
Q 031700           76 ENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASD  127 (154)
Q Consensus        76 ~~~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~  127 (154)
                      + +|++++++.+++++|+.   .++..+++++.|.+ ++|+|+|+++|+...+
T Consensus        73 ~-~~~~~~~I~~~~~~g~~---~~~l~g~w~f~p~~~g~t~V~~~~~~e~~~p  121 (161)
T 3p9v_A           73 H-ADKEAGKITWSPIKGEG---NGVVSGSWTLSAKGDNATAVKFQTSAELTVP  121 (161)
T ss_dssp             E-EETTTTEEEEEECTTST---TEEEEEEEEEEESSSSCEEEEEEEEEEEEEC
T ss_pred             E-EcCCCCEEEEEEecCcc---ceeEEEEEEEEECCCCeEEEEEEEEEEEcCc
Confidence            3 67779999999998775   37888999999995 4599999999999844

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=99.16  E-value=3.3e-09  Score=74.42  Aligned_cols=137  Identities=10%  Similarity=0.062  Sum_probs=93.3

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc---CCCceeeeeeEEEEeeeCCCc
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA---DGSPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~---~G~~~~~~~kErl~~~D~~~~   83 (154)
                      .++.++.|+||+++||+++.|.. .+++|.+..--.+...+++. .+|..-++.+.   +|...  ...-++.+++ +++
T Consensus         4 ~~~~~~~i~ap~e~Vw~altd~~-~~~~W~~~~~~~~~~~~~~~-~~Gg~~~~~~~~~~~g~~~--~~~~~v~~~~-p~~   78 (147)
T 1z94_A            4 TIRLHRVLSAPPERVYRAFLDPL-ALAKWLPPEGFVCKVLEHDA-RVGGAYKMEFLAFASGQKH--AFGGRYLELV-PGE   78 (147)
T ss_dssp             CEEEEEEESSCHHHHHHHTTCHH-HHHHHSSCTTEEEEEEEECC-STTCEEEEEEEETTTCCEE--EEEEEEEEEE-TTT
T ss_pred             EEEEEEEeCCCHHHHHHHhCCHH-HHhhccCCCCEeeeEEEEcc-CCCcEEEEEEEECCCCCEE--EEEEEEEEEc-CCC
Confidence            68889999999999999999995 78999974311222334554 56766666553   34332  2677888886 678


Q ss_pred             EEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 031700           84 VVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        84 ~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      +|.|+...++... -.....++++.|.+++|+++++.++.+...   ...........++.+|+++|.+
T Consensus        79 ~l~~~~~~~~~~~-~~~~~~~~~l~~~~~gT~l~~~~~~~~~~~---~~~~~~~gw~~~L~~L~~~le~  143 (147)
T 1z94_A           79 RIRYTDRFDDAGL-PGDMITTITLAPLSCGADLSIVQEGIPDAI---PPENCYLGWQQSLKQLAALVEP  143 (147)
T ss_dssp             EEEEEEEESCCC----CEEEEEEEEEETTEEEEEEEEECCCTTS---CHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEEEEEeCCCC-CCcEEEEEEEEecCCCEEEEEEEEcCCchh---hHHHHHHHHHHHHHHHHHHHHh
Confidence            8999986553211 113567888988877899999988754321   2334445567788888888753

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=99.13  E-value=2.5e-09  Score=74.80  Aligned_cols=138  Identities=9%  Similarity=0.054  Sum_probs=91.5

Q ss_pred             CCCCcceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCC-ceeeeeeEEEEeee
Q 031700            1 MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS-PIVKVSTEKIENVD   79 (154)
Q Consensus         1 m~~~~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~-~~~~~~kErl~~~D   79 (154)
                      |.. ..+++.++.|+||+++||+++.|.. .+++|.++..  +   +++. .+|..-++.+.+++ ..  .+..++.+++
T Consensus         1 M~~-~~~i~~~~~i~ap~e~Vw~~ltd~~-~~~~W~~~~~--~---~~~~-~~G~~~~~~~~~~g~~~--~~~~~v~~~~   70 (146)
T 2leq_A            1 MEI-KLIAQVKTVINAPIEKVWEALVNPE-IIKEYMFGTT--V---VSDW-KEGSQIVWKGEWKGKAY--EDKGTILQFN   70 (146)
T ss_dssp             CCC-CEEEEEEEEECSCHHHHHHHHSCTT-HHHHHSSSCE--E---ECCC-STTCEEEEEEEETTEEE--EEEEEEEEEE
T ss_pred             CCC-CceEEEEEEECCCHHHHHHHHcCHH-HhceeEcCCc--c---eecc-CCCCEEEEEecCCCcee--cccEEEEEEc
Confidence            553 4689999999999999999999995 7999963222  1   3443 56666666666444 22  2677888886


Q ss_pred             CCCcEEEEEEEecC-c--ccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 031700           80 EANKVVTYKVIDGD-L--LKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        80 ~~~~~~~Y~~ieg~-~--~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                       +++++.|+..... .  ...-.....++++.|.+++|+++|+.+..+..   .......+....++.+|.++|..
T Consensus        71 -p~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~gT~l~~~~~~~~~~---~~~~~~~~gw~~~l~~Lk~~le~  142 (146)
T 2leq_A           71 -ERSILQYSHFSPLTGKPDLPENYHVVTITLTALKKGVEVELTQDNNETE---KEQKHSEDNWNTMLEGLKKFLEN  142 (146)
T ss_dssp             -TTTEEEEECBCGGGCCCSCGGGSCEEEEEEEECSSCEEEEEEEEEESSH---HHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             -CCCEEEEEEccCccCCCCCCCCceEEEEEEEEcCCCeEEEEEEecCCch---hhHhhHHhhHHHHHHHHHHHHhc
Confidence             5788888875321 0  00112456788999987789999997654321   11223335567788888888753

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=99.07  E-value=1.5e-08  Score=71.48  Aligned_cols=128  Identities=15%  Similarity=0.051  Sum_probs=88.2

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccc-cCcccceEEEEcCCCCCCCcEEEEEEc--CCC-ceeeeeeEEEEeeeCCC
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKA-FSHDYKSIQVLEGDGKAPGSVRLITYA--DGS-PIVKVSTEKIENVDEAN   82 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~-~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G~-~~~~~~kErl~~~D~~~   82 (154)
                      +++.++.|+||+++||+++.|.. .+++| .+..--.+...+++. .+|..-.+.+.  +|. ..  .+.-++.+++ +.
T Consensus         2 ~i~~~~~i~ap~e~Vw~altd~~-~~~~W~~~~~~~~~~~~~~d~-~~Gg~~~~~~~~~~g~~~~--~~~~~v~~~~-p~   76 (142)
T 2lcg_A            2 NITVETTVAAPVGKVWRAYTTPE-DIKQWNAASDDWHTTAATVDL-REGGAFSSRMEAKDGSMGF--DFAGTYTKVV-EN   76 (142)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCHH-HHHHHCCSSTTEEEEEEEECC-STTCEEEEEEEETTSSCEE--EEEEEEEEEE-TT
T ss_pred             eEEEEEEeCCCHHHHHHHhCCHH-HHhcCCCCCCCccceeeEEcc-ccCCEEEEEEEcCCCCcee--eeEEEEEEEc-CC
Confidence            57889999999999999999995 68999 653211223334554 56776665554  453 22  2677888886 67


Q ss_pred             cEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 031700           83 KVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      ++|.|+.- |        ...++.+.|.+++|+++++.++.  .  ....+...+....++.+|+++|..
T Consensus        77 ~~l~~~~~-g--------~~~~~~l~~~~~gT~l~~~~~~~--~--~~~~~~~~~Gw~~~L~~L~~~le~  133 (142)
T 2lcg_A           77 KRIEYAFG-D--------RTAKVEFLEAPQGVTVRVSFVAE--T--EYPVEQQQQGWQAILNNFKRHVES  133 (142)
T ss_dssp             TEEEEEET-T--------EEEEEEEEEETTEEEEEEEEECC--S--SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcC-C--------CEEEEEEEEcCCCEEEEEEEecC--C--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999861 1        55788888887789999987762  1  122344455567778888888754

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=99.02  E-value=2.6e-09  Score=75.30  Aligned_cols=127  Identities=11%  Similarity=0.090  Sum_probs=85.5

Q ss_pred             CCcceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCC
Q 031700            3 SAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         3 ~~~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~   82 (154)
                      +....++.++.|+||+++||+++.|.. .+++|.|.    +   +++. .+|....+.+..| .    +.-++.+++ ++
T Consensus         5 ~~~~~i~~~~~i~ap~e~Vw~~ltd~~-~~~~W~~~----~---~~~~-~~G~~~~~~~~~g-~----~~~~v~e~~-p~   69 (143)
T 1xn6_A            5 NTLNDIKQTIVFNASIQKVWSVVSTAE-GIASWFMP----N---DFVL-EVGHEFHVQSPFG-P----SPCKVLEID-EP   69 (143)
T ss_dssp             CSCCCEEEEEEESSCHHHHHHTTSCSH-HHHTTSCC----B---CCCC-CTTCEECBCCTTC-C----CCEEEEEEE-TT
T ss_pred             CCCCEEEEEEEEcCCHHHHHHHHhCHh-HHHHhcCC----C---CcCc-CCCCEEEEEEcCC-C----ceEEEEEEe-CC
Confidence            345579999999999999999999996 79999984    2   3433 5666655555433 2    356788887 47


Q ss_pred             cEEEEEEEecCcccceeEEEEEEEEeeCCC-CeEEEEEEEEEeCC-CCCCC----hh----hHHHHHHHHH-HHHHHHHh
Q 031700           83 KVVTYKVIDGDLLKYYKAFKGIVSVNPKGE-GSLVKWACEFEKAS-DDVPD----PS----VIKDFALKNF-QEVDDYIL  151 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~-~s~v~Wt~~~e~~~-~~~~~----~~----~~~~~~~~~~-k~ie~~l~  151 (154)
                      +++.|+...+       ....++++.|.++ +|+++++.+..+.. +..+.    ..    ...+....++ ..|.+||.
T Consensus        70 ~~l~~~~~~~-------~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~~L~~~le  142 (143)
T 1xn6_A           70 NHLSFSWDTD-------GWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVE  142 (143)
T ss_dssp             TEEEEEETTT-------TEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CEEEEEEeCC-------CEEEEEEEEECCCCcEEEEEEEEccCccccccccccchhhHHHHHHHHhHHHHHHHHHHHHhc
Confidence            7888887543       3456888888855 89999988754432 11111    11    2224456677 77777764

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=99.00  E-value=4.7e-08  Score=71.09  Aligned_cols=139  Identities=9%  Similarity=0.043  Sum_probs=90.9

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcc--cceEEEEcCCCCCCCcEEEEEE--cCCCceeeeeeEEEEeeeCC
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHD--YKSIQVLEGDGKAPGSVRLITY--ADGSPIVKVSTEKIENVDEA   81 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~--v~s~~~~eG~~~~~GsvR~~~~--~~G~~~~~~~kErl~~~D~~   81 (154)
                      ..++.+..|+||+++||+++.|.. .+.+|.+..  .. +...+++. .+|..-.+.+  .+|...  .+.-++.+++ +
T Consensus         9 ~~i~~~r~i~Ap~e~Vw~a~Tdpe-~l~~W~~~~~~~~-~~~~~~d~-~~GG~~~~~~~~~~G~~~--~~~g~v~ev~-p   82 (166)
T 3put_A            9 TTFVIERRLTAPVARVFRAWSTPE-SKRQWFACHGEWV-PLEYALDF-RPGGTERNYTADTDGLLH--AYDARYIDIV-P   82 (166)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHH-HHHHHHTCC---C-CSEEEECC-STTCEEEEEEECTTSCEE--EEEEEEEEEE-T
T ss_pred             ceEEEEEEECCCHHHHHHHhCCHH-HHHhcCCCCCCce-eeEEEeCc-ccCCEEEEEEECCCCCEE--EEEEEEEEEc-C
Confidence            568999999999999999999985 688997422  11 11123443 4554444444  356543  2677888896 6


Q ss_pred             CcEEEEEEEec-CcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 031700           82 NKVVTYKVIDG-DLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        82 ~~~~~Y~~ieg-~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      +++|.|+..-. +. ........++.+.+.+++|+++.+-+.-+..+. ...+...+.-..++..|++||..
T Consensus        83 ~~rlv~t~~~~~~~-~~~~~s~vt~~l~~~~~gT~ltl~~~~~~~~~~-~~~~~~~~GW~~~L~~L~~~le~  152 (166)
T 3put_A           83 DTRIIYAYEMKLGQ-TRISASLVTVAFDVEPSGTRMVFTEQVVFLDGY-GDNGARLQGTEIGLDNLELFLVR  152 (166)
T ss_dssp             TTEEEEEEEEEETT-EEEEEEEEEEEEEECSSSEEEEEEEEEEEETTC-CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEEecCCC-CCCCceEEEEEEEECCCCEEEEEEEEecCccch-hhHHHHHHHHHHHHHHHHHHHhc
Confidence            77788876421 11 112345678899998889999999877643321 12344556677788888888854

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=98.98  E-value=2.5e-08  Score=73.11  Aligned_cols=138  Identities=8%  Similarity=0.060  Sum_probs=89.4

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCCc
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~~   83 (154)
                      ..++.++.|+||+++||+++.|.. .+++|++..--.+...+++. .+|..-.+.+.  +|...  ...-++.+++ +.+
T Consensus        22 ~~i~~~r~i~Ap~e~Vw~altdpe-~~~~W~~~~~~~~~~~~~d~-~~Gg~~~~~~~~~~G~~~--~~~~~v~e~~-p~~   96 (178)
T 1xuv_A           22 QEIIITREFDAPRELVFKAFTDPD-LYTQWIGPRGFTTALKIFEP-KNGGSWQYIQKDPEGNEY--AFHGVNHDVT-EPE   96 (178)
T ss_dssp             SEEEEEEEESSCHHHHHHHHHCHH-HHTTTCSSTTCEEEEEEECC-STTCEEEEEEECTTSCEE--EEEEEEEEEE-TTT
T ss_pred             cEEEEEEEECCCHHHHHHHhCCHH-HHHhCCCCCCccceEEEEec-ccCCEEEEEEECCCCCEE--EEEEEEEEEe-CCC
Confidence            468899999999999999999995 68999753211233344554 56665555543  55533  2677888886 677


Q ss_pred             EEEEEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCCCCChhhH-----HHHHHHHHHHHHHHHhh
Q 031700           84 VVTYKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDDVPDPSVI-----KDFALKNFQEVDDYILK  152 (154)
Q Consensus        84 ~~~Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~~~~~~~~-----~~~~~~~~k~ie~~l~~  152 (154)
                      +|.|+...++....-.....++.+.|.+ ++|+++++.+|.+..    ..+..     .+....++.+|+++|.+
T Consensus        97 rl~~~~~~~~~~~~~~~~~v~~~l~~~~~ggT~lt~~~~~~~~~----~~~~~~~~~~~~Gw~~~L~~Lk~~le~  167 (178)
T 1xuv_A           97 RIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTIE----DRDGMLQSGMEEGINDSYERLDELLEK  167 (178)
T ss_dssp             EEEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEECSSHH----HHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCCCCCcEEEEEEEEEcCCCCEEEEEEEEeCCHH----HHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            8888875433110012456788999986 789999998863110    11122     24456777888887743

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=98.97  E-value=6.9e-08  Score=69.66  Aligned_cols=138  Identities=9%  Similarity=0.127  Sum_probs=90.4

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcc--cceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCC
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHD--YKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEA   81 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~--v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~   81 (154)
                      ..+..+..|+||+++||+++.|.. .+.+|.+..  +. +...+++. .+|..-.+.+.  +|...  .+.-++.+++ +
T Consensus         8 ~~i~~~r~i~Ap~e~Vw~altdp~-~~~~W~~~~~~~~-~~~~~~d~-~~Gg~~~~~~~~~~G~~~--~~~g~v~e~~-p   81 (161)
T 3rd6_A            8 STFTIERTYPQSPDRVFHAFADKA-TVRRWRVDGDGFT-VAEFSFDF-RVGGGEVSRFSYGGGPEV--RLDAQFQDIV-P   81 (161)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHH-HHHHHTCCCCC----CEEEECC-STTCEEEEEECSTTSCCE--EEEEEEEEEE-T
T ss_pred             ceEEEEEEECCCHHHHHHHhcCHH-HHhhccCCCCCce-eeEEEEcc-CcCCEEEEEEECCCCCEE--EEEEEEEEEc-C
Confidence            578999999999999999999985 789998532  21 22234443 55666556554  56543  2667888886 6


Q ss_pred             CcEEEEEEEec-CcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700           82 NKVVTYKVIDG-DLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        82 ~~~~~Y~~ieg-~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~  151 (154)
                      +++|.|+..-. +.. .......++++.|.++||+++++-+.-+.++ ....+...+.-..++..|++||.
T Consensus        82 ~~rl~~~~~~~~~~~-~~~~s~v~~~l~~~~~gT~lt~~~~~~~~~~-~~~~~~~~~GW~~~L~~L~~~le  150 (161)
T 3rd6_A           82 DQRIVFSYRMAIGPQ-PMSASLTTVELTPSGDGTRLTYTEQGAFFDG-VDSAKGREEGTRGLLEALAAELQ  150 (161)
T ss_dssp             TTEEEEEEEEEETTE-EEEEEEEEEEEEEETTEEEEEEEEEEEEETT-CCCHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCEEEEEEEecCCCC-CCCceEEEEEEEECCCCEEEEEEEEecCcch-hhhHHHHHHHHHHHHHHHHHHHh
Confidence            67788876421 111 1234567888988877899999988753221 11234455666778888888874

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=98.96  E-value=3e-08  Score=71.78  Aligned_cols=140  Identities=14%  Similarity=0.059  Sum_probs=90.6

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCCc
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~~   83 (154)
                      ..++.++.|+||+++||+++.|.. .+++|.+..--.+...+++. .+|..-.+.+.  +|...  ...-++.+++ +++
T Consensus        14 ~~i~~~~~i~ap~e~Vw~altdp~-~~~~W~~p~~~~~~~~~~d~-~~Gg~~~~~~~~~~G~~~--~~~~~v~e~~-p~~   88 (171)
T 2il5_A           14 VEVEIEKLYKFSPELVYEAWTKKD-LLKQWFMTSARTNKEIEADV-KEGGKYRIVDQQRNGKVN--VIEGIYESLV-MDE   88 (171)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHH-HHTTTSSSCTTTEEEEEECC-STTCEEEEEEECGGGCEE--EEEEEEEEEE-TTT
T ss_pred             ceEEEEEEeCCCHHHHHHHHCCHH-HHHhccCCCCccceEEEecc-cCCCEEEEEEECCCCCEE--EEEEEEEEEc-CCC
Confidence            468999999999999999999985 68899853211233344554 56666555553  55432  2567888886 788


Q ss_pred             EEEEEEEecCcccceeEEEEEEEEeeCCC-CeEEEEEEEEEeCCC-CCCC----------hhhHHHHHHHHHHHHHHHHh
Q 031700           84 VVTYKVIDGDLLKYYKAFKGIVSVNPKGE-GSLVKWACEFEKASD-DVPD----------PSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        84 ~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~-~s~v~Wt~~~e~~~~-~~~~----------~~~~~~~~~~~~k~ie~~l~  151 (154)
                      +|.|+...++...  .....++.+.|.++ +|+++++.+..+..+ ....          .+...+....++.+|++||.
T Consensus        89 rl~~~~~~~~~~~--~~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le  166 (171)
T 2il5_A           89 YVKMTIGMPGLSE--TQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIE  166 (171)
T ss_dssp             EEEEEESCC--CC--CCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCC--CcEEEEEEEEECCCCCEEEEEEEEeccCcccccccchhccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            8999876443211  23567899999865 899999987544321 0000          11222345677888888875


Q ss_pred             h
Q 031700          152 K  152 (154)
Q Consensus       152 ~  152 (154)
                      +
T Consensus       167 ~  167 (171)
T 2il5_A          167 T  167 (171)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=98.96  E-value=5.8e-08  Score=68.83  Aligned_cols=129  Identities=16%  Similarity=0.155  Sum_probs=86.8

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccc-cCcccceEEEEcCCCCCCCcEEEEEEc--CCC-ceeeeeeEEEEeeeCCC
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKA-FSHDYKSIQVLEGDGKAPGSVRLITYA--DGS-PIVKVSTEKIENVDEAN   82 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~-~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G~-~~~~~~kErl~~~D~~~   82 (154)
                      .++.++.|+||+++||+++.|.. .+++| .+..--.+...+++. .+|..-.+.+.  +|. ..  .+.-++.+++ +.
T Consensus         3 ~i~~~~~i~Ap~e~Vw~altdpe-~~~~W~~~p~~~~~~~~~~d~-~~Gg~~~~~~~~~~G~~~~--~~~g~v~e~~-p~   77 (144)
T 2l8o_A            3 KITVEVTVYAAIEKVWKYWNEPA-HIMKWCQASPEWHVPAAQNDL-KAGGTFTTTMAAKDGSMSF--DFGGVYDQVK-TN   77 (144)
T ss_dssp             SEEEEEEECSCHHHHHHHHHCHH-HHHHHSTTCTTCEEEEEECCC-STTCEEEEEEECTTSSCEE--EEEEEEEEEE-TT
T ss_pred             EEEEEEEECCCHHHHHHHHCCHH-HHhhccCCCCCcccceeEEcc-CCCCEEEEEEECCCCCcee--eeeEEEEEEe-CC
Confidence            47889999999999999999995 78999 652211333345654 45555444443  554 22  2566788886 67


Q ss_pred             cEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 031700           83 KVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      ++|.|+.. |       ....++.+.|.+++|+++.+.++ +.   ....+...+....++.+|+++|..
T Consensus        78 ~~l~~~~~-g-------~~~v~~~l~~~~~gT~l~~~~~~-~~---~~~~~~~~~Gw~~~L~~L~~~le~  135 (144)
T 2l8o_A           78 DLIEYTIG-D-------GRKVRIVFTHTGDTTNIVESFDP-EE---TNPRELQQSGWQAILNSFKSYTEN  135 (144)
T ss_dssp             TEEEEEET-T-------CCEEEEEEEECSSSEEEEEEECC-CS---SSCHHHHHHHHHHHHHHHHHHHGG
T ss_pred             CEEEEEeC-C-------CeEEEEEEEEcCCCEEEEEEEeC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88999852 2       24568888888778999888765 11   122334445567778888888754

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=98.93  E-value=4.2e-08  Score=70.86  Aligned_cols=138  Identities=12%  Similarity=0.032  Sum_probs=90.2

Q ss_pred             cceEEEEEEEcCCHHHHHHHHhccCCCCccccCcc----cceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEee
Q 031700            5 GGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHD----YKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENV   78 (154)
Q Consensus         5 ~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~----v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~   78 (154)
                      ...+..+..|+||+++||+++.|.. .+++|.+..    +..++   ++. .+|..-.+.+.  +|...  .+.-++.++
T Consensus         8 ~~~i~~~r~i~Ap~e~Vw~altdp~-~~~~W~~~~~g~~~~~~~---~d~-~~Gg~~~~~~~~~~G~~~--~~~g~v~e~   80 (162)
T 3q64_A            8 HSTFIIERLYPAPPSKVFFALGNAD-AKRRWFTDPDNPMPGRFE---MDF-RVGGKEVNAGGPKDGPIH--VYTATYQDI   80 (162)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCHH-HHHHHSSCTTSCCGGGCE---ECC-STTCEEEEEECCTTSCCE--EEEEEEEEE
T ss_pred             cceEEEEEEeCCCHHHHHHHHCCHH-HHhhcCCCCCCccceEEE---ECC-ccCCEEEEEEECCCCCEE--EEEEEEEEE
Confidence            3568999999999999999999985 789998532    12222   333 45555555554  56543  267788888


Q ss_pred             eCCCcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700           79 DEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        79 D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~  151 (154)
                      + +.++|.|+..-............++.+.|.++||+++++-+.-+..+ ....+...+.-..++..|++||.
T Consensus        81 ~-p~~rl~~~~~~~~~~~~~~~s~v~~~l~~~~~gT~lt~~~~~~~~~~-~~~~~~~~~GW~~~L~~L~~~le  151 (162)
T 3q64_A           81 V-PDQRIVYSYDMLFGETRISVSLATIQLFAEGEGTRLVLTEQGAFLDG-HDTPSTREHGTGVLLDLLDAFLD  151 (162)
T ss_dssp             E-TTTEEEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEETT-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-CCCEEEEEEEecCCCCCCCceEEEEEEEEcCCCEEEEEEEEecCccc-hhHHHHHHHHHHHHHHHHHHHHh
Confidence            5 67778887652110001234567888988877899999988653221 11234445566777888888775

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.93  E-value=1e-07  Score=69.02  Aligned_cols=137  Identities=9%  Similarity=0.141  Sum_probs=89.4

Q ss_pred             cceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCC
Q 031700            5 GGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         5 ~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~   82 (154)
                      ...++.++.|+||+++||+++.|.. .+.+|.+..--.+...+++. .+|..-.+.+.  +|...  .+.-++.+++ ++
T Consensus        12 ~~~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~~~~~~~~~~~~d~-~~Gg~~~~~~~~~~G~~~--~~~g~v~e~~-p~   86 (164)
T 3pu2_A           12 ATRLEFRRHFAATPEQLWAALTSPA-LLPAWLFARGWPMTECVFEP-HKGGLIRQVWTGPEGRTR--GLTGRVILAE-PP   86 (164)
T ss_dssp             TTEEEEEEEESSCHHHHHHHHHCTT-TGGGTSCBTTBCEEEEEECC-STTCEEEEEEECGGGCEE--EEEEEEEEEE-TT
T ss_pred             CceEEEEEEECCCHHHHHHHhcCHH-HHhhEeCCCCeeeEEEEEec-cCCCEEEEEEECCCCCEE--EEEEEEEEEc-CC
Confidence            3579999999999999999999995 79999863211233344554 56655555443  56543  2677888885 67


Q ss_pred             cEEEEEEEe-cCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChh-----hHHHHHHHHHHHHHHHHhh
Q 031700           83 KVVTYKVID-GDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPS-----VIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        83 ~~~~Y~~ie-g~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~-----~~~~~~~~~~k~ie~~l~~  152 (154)
                      ++|.|+..- ++..+.  ....++.+.|.++||+++++.+|... +   ..+     ...+....++.+|++||.+
T Consensus        87 ~rl~~t~~~~~~~~~~--~s~vt~~l~~~~~gT~l~l~~~~~~~-~---~~~~~~~~~~~~GW~~~L~~L~~~l~~  156 (164)
T 3pu2_A           87 HRLIHSELYDEDWTGG--ETLVTLQLLPVEGGTELAMAVDYATP-E---ARDAVAASAMATEMEEAYRHLDVMLAA  156 (164)
T ss_dssp             TEEEEEEBCC---CCS--CEEEEEEEEEETTEEEEEEEEECSST-T---HHHHHHTSTHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEeccCCCCCC--CEEEEEEEEEcCCCEEEEEEEEeCCH-H---HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            788888642 211111  25678889888778999999885321 1   111     1234566778888888764

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.90  E-value=3.5e-08  Score=68.94  Aligned_cols=124  Identities=12%  Similarity=0.100  Sum_probs=83.8

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      +++.++.|+||+++||+++.|.. .+++|.+.   .   .+++. .+|..-.+.+.+....   ..-++.+++ +++++.
T Consensus         2 ~i~~~~~i~ap~e~Vw~altd~~-~~~~W~~~---~---~~~~~-~~Gg~~~~~~~~~~~~---~~~~v~~~~-p~~~l~   69 (135)
T 3q6a_A            2 DIITKMQVDVPRETVFEAFVDPE-KIGGFWFS---S---SSERW-EQGKTITLRYEEYDAE---LNINIERVE-DNQLIA   69 (135)
T ss_dssp             CEEEEEEESSCHHHHHHHHHCTT-TGGGTSSS---E---ESSCC-CTTCEEEEECGGGTC----CEEEEEEEE-TTTEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHcCHH-HhcccCCC---C---Ccccc-cCCCEEEEEEcCcCce---EEEEEEEEc-CCCEEE
Confidence            57899999999999999999995 79999763   2   24554 6777766666532111   344677785 668888


Q ss_pred             EEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      |+..+|         ..++++.|.+++|+++++-..-+..+ ........+....++.+|++||..
T Consensus        70 ~~~~~g---------~~~~~l~~~~~gT~l~~~~~~~~~~~-~~~~~~~~~GW~~~l~~L~~~le~  125 (135)
T 3q6a_A           70 FTWGAH---------PITIQFEESEAGTVVTTTEKDFDTQD-VKQLLGQKEGWVYMLSCLKVYLEH  125 (135)
T ss_dssp             EEETTE---------EEEEEEEEETTEEEEEEEECCCCSSC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCC---------eEEEEEEECCCCEEEEEEEcCCCcch-HHHHhhchhCHHHHHHHHHHHHhc
Confidence            887531         67888888878899998865322211 000112345566788888888864

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.90  E-value=1.5e-07  Score=66.62  Aligned_cols=128  Identities=16%  Similarity=0.159  Sum_probs=85.4

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccc-cCc-ccceEEEEcCCCCCCCcEEEEEEc--CCC-ceeeeeeEEEEeeeCC
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKA-FSH-DYKSIQVLEGDGKAPGSVRLITYA--DGS-PIVKVSTEKIENVDEA   81 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~-~p~-~v~s~~~~eG~~~~~GsvR~~~~~--~G~-~~~~~~kErl~~~D~~   81 (154)
                      .++.++.|+||+++||+++.|.. .+++| ++. .+ .+...+++. .+|..-.+.+.  +|. ...  +.-++.+++ +
T Consensus         2 ~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~~p~~~-~~~~~~~d~-~~Gg~~~~~~~~~~G~~~~~--~~g~v~e~~-p   75 (144)
T 2lgh_A            2 KISIEAHIEQEIEAVWWAWNDPD-CIARWNAASSDW-HTTGSRVDL-VVGGRFCHHMAAKDGSAGFD--FTGTFTRVE-A   75 (144)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHH-HHTTSSSCSTTE-EEEEEEECC-STTCEEEEEEEETTSSCEEE--EEEEEEEEE-T
T ss_pred             EEEEEEEeCCCHHHHHHHhCCHH-HHhccCCCCCCc-ccceEEECC-CCCCEEEEEEECCCCCceEE--eEEEEEEEe-C
Confidence            57889999999999999999995 68999 652 22 222234443 45554444443  554 222  566788886 6


Q ss_pred             CcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 031700           82 NKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        82 ~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      .++|.|+.. |       ....++++.|.+++|+++.+.++.  +.  ...+...+....++.+|+++|..
T Consensus        76 ~~~l~~~~~-~-------~~~~~~~l~~~~~gT~l~~~~~~~--~~--~~~~~~~~Gw~~~L~~L~~~le~  134 (144)
T 2lgh_A           76 PTRLSFVMD-D-------GREVDVQFASEPGGTWVQETFDAE--TS--HTPAQQQAGWQGILDNFKRYVEA  134 (144)
T ss_dssp             TTEEEEEET-T-------CCEEEEEEEEETTEEEEEEEEECC--TT--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEec-C-------CcEEEEEEEEcCCCEEEEEEEECC--CH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence            788999852 2       134678888887789998887662  11  12334445567788888888754

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.87  E-value=4e-08  Score=71.34  Aligned_cols=137  Identities=9%  Similarity=0.142  Sum_probs=89.4

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCc-ccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCC
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSH-DYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~-~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~   82 (154)
                      ..++.++.|+||+++||+++.|.. .+++|++. .+ .+...+++. .+|..-.+.+.  +|...  ...-++.+++ ++
T Consensus        12 ~~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~p~~~-~~~~~~~d~-~~Gg~~~~~~~~~~g~~~--~~~~~v~e~~-p~   85 (172)
T 2ldk_A           12 LSFSIVAEFDADVKRVWAIWEDPR-QLERWWGPPTW-PATFETHEF-TVGGKAAYYMTGPDGTKA--RGWWQFTTIE-AP   85 (172)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHCHH-HHHTTSSCTTS-CEEEEEECC-STTCEEEEEEECTTSCEE--EEEEEEEEEC-SS
T ss_pred             ceEEEEEEeCCCHHHHHHHhCCHH-HHHhccCCCCc-ccceEEEee-cCCCEEEEEEECCCCCEE--eeEEEEEEEc-CC
Confidence            478999999999999999999985 68888652 22 223334554 56665555543  55532  2567888895 67


Q ss_pred             cEEEEEEEecC----cccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhh-----HHHHHHHHHHHHHHHHhh
Q 031700           83 KVVTYKVIDGD----LLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSV-----IKDFALKNFQEVDDYILK  152 (154)
Q Consensus        83 ~~~~Y~~ieg~----~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~-----~~~~~~~~~k~ie~~l~~  152 (154)
                      ++|.|+....+    +.........++.+.|.+++|+++++.++.+..    ..+.     ..+....++.+|++||.+
T Consensus        86 ~rl~~~~~~~~~~g~p~~~~~~~~v~~~l~~~~~gT~lt~~~~~~~~~----~~~~~~~~~~~~Gw~~~L~~L~~~le~  160 (172)
T 2ldk_A           86 DHLEFDDGFADEHGAPVDELGVTHATVKLEPLENRTRMTIISTFESEE----QMQKMAEMGMEEGMREAIEQIDAVLSE  160 (172)
T ss_dssp             SEEEEEEEEBCSSCCBCTTTCEEEEEEEEEEETTEEEEEEEEEESCHH----HHHHHHHHTHHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEEEeecCCCCCccCCCccEEEEEEEEEcCCCEEEEEEEEcCCHH----HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            88888875432    110112456788898887789999998863210    0111     134456788888888754

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.85  E-value=2e-08  Score=71.30  Aligned_cols=100  Identities=13%  Similarity=0.187  Sum_probs=72.7

Q ss_pred             CCCCcceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeC
Q 031700            1 MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE   80 (154)
Q Consensus         1 m~~~~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~   80 (154)
                      |.. ...++.++.|+||+++||+++.|.. .+++|+|. .      +++. .+|..-.+.++.| .    +.-++.+++ 
T Consensus         1 M~~-~~~i~~~~~i~Ap~e~Vw~altd~~-~~~~W~~~-~------~~~~-~~Gg~~~~~~~~g-~----~~~~v~e~~-   64 (146)
T 1xn5_A            1 MTR-LPDIKKEVRFNAPIEKVWEAVSTSE-GLAFWFME-N------DLKA-ETGHHFHLQSPFG-P----SPCQVTDVE-   64 (146)
T ss_dssp             CCS-CCCEEEEEEESSCHHHHHHHTTSHH-HHHTTSCC-B------CCCS-CTTCEEEEECSSC-E----EEEEEEEEE-
T ss_pred             CCC-CcEEEEEEEEcCCHHHHHHHHhChh-HHHHhcCC-C------CCCc-cCCCEEEEEecCC-c----eEEEEEEEe-
Confidence            553 4589999999999999999999996 78999984 2      3443 5666656655333 2    467888886 


Q ss_pred             CCcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEE
Q 031700           81 ANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFE  123 (154)
Q Consensus        81 ~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e  123 (154)
                      +.+++.|+... .      ....++++.|.+++|+++++.+--
T Consensus        65 p~~~l~~~~~~-~------~~~~~~~l~~~~~gT~l~~~~~~~  100 (146)
T 1xn5_A           65 RPIKLSFTWDT-D------GWSVTFHLKEEENGTIFTIVHSGW  100 (146)
T ss_dssp             TTTEEEEEETT-T------TEEEEEEEEECSSSEEEEEEEECC
T ss_pred             CCcEEEEEEeC-C------CEEEEEEEEEcCCCEEEEEEEEEe
Confidence            57788888752 1      234688888887789999886633

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=98.84  E-value=1.2e-08  Score=73.30  Aligned_cols=132  Identities=8%  Similarity=0.047  Sum_probs=85.8

Q ss_pred             cceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            5 GGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         5 ~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      ...++.++.|+||+++||+++.|.. .+++|+|. ..+     ++. .+|..-.+++. |...   +..++.+++ ++++
T Consensus         8 ~~~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~~-~~~-----~~~-~~Gg~~~~~~~-g~~~---~~~~v~e~~-p~~~   74 (160)
T 2lak_A            8 SFVVRREAHLAAPPAAVFALMTDPE-KILRWMGT-EAE-----VEP-EPGGLYLVNVT-GARF---ARGSFREVV-PVHR   74 (160)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHCHH-HHHHTSCS-SEE-----ESC-STTCCEEECSS-TTCC---SSCCEEEEE-TTTE
T ss_pred             CceEEEEEEeCCCHHHHHHHhcChH-HHhhhCCC-cce-----eec-cCCCEEEEEEe-CCce---EEEEEEEEc-CCCE
Confidence            3579999999999999999999995 78999984 322     222 34444445554 4321   456788886 6778


Q ss_pred             EEEEEEecCc-ccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 031700           85 VTYKVIDGDL-LKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        85 ~~Y~~ieg~~-~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      |.|+...++. ...-.....++++.|.+++|+++|+.+--+..   ...+...+....++.+|.++|.+
T Consensus        75 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~gT~l~~~~~~~~~~---~~~~~~~~gw~~~L~~Lk~~le~  140 (160)
T 2lak_A           75 LAYSFGWDGSEVVPPGSSLVEIDLIEQGGGTLLRLTHSGLPSA---EQCAGHEEGWAHYLGRLTEVAAG  140 (160)
T ss_dssp             EEECCCCCSSSCCCTTSCEEEEEEEECSSSEEEEEEEECCCSH---HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEecCCCCCCCCcEEEEEEEEECCCCEEEEEEEeCCCCH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888653321 00112456788999987789999987621110   01123334566788888888754

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.82  E-value=9.2e-08  Score=69.87  Aligned_cols=137  Identities=12%  Similarity=0.159  Sum_probs=87.7

Q ss_pred             cceEEEEEEEcCCHHHHHHHHhccCCCCccccCc-ccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCC
Q 031700            5 GGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSH-DYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEA   81 (154)
Q Consensus         5 ~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~-~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~   81 (154)
                      ...++.++.|+||+++||+++.|.. .+++|++. .+ .+...+++. .+|..-.+.+.  +|...  ...-++.+++ +
T Consensus         9 ~~~i~~~r~i~Ap~e~Vw~altdp~-~~~~W~~p~~~-~~~~~~~d~-~~Gg~~~~~~~~~~G~~~--~~~~~v~e~~-p   82 (178)
T 1xfs_A            9 ELDLMLKRELAVPVNLVWRGLTEPE-LLKKWFVPKPW-SISDCRVDL-RPGGEFYTVMQDPEGNKF--PNSGCFLEVT-D   82 (178)
T ss_dssp             TTEEEEEEEESSCHHHHHHHHHCHH-HHTTTSSCTTC-EEEEEEECC-STTCEEEEEEECTTCCEE--EEEEEEEEEE-T
T ss_pred             CceEEEEEEecCCHHHHHHHhCCHH-HHhhCCCCCCe-eeeEEEEee-ECCcEEEEEEECCCCCEE--EEEEEEEEEe-C
Confidence            3468999999999999999999995 68899653 23 223344554 56766666654  45432  2567888886 6


Q ss_pred             CcEEEEEEEecC---cccce-----e----EEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhH-----HHHHHHHHH
Q 031700           82 NKVVTYKVIDGD---LLKYY-----K----AFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVI-----KDFALKNFQ  144 (154)
Q Consensus        82 ~~~~~Y~~ieg~---~~~~~-----~----~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~-----~~~~~~~~k  144 (154)
                      .++|.|+..-++   +...+     .    ....++.+.|.+++|+++++.+|.+..    ..+..     .+....++.
T Consensus        83 ~~rl~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~gT~l~~~~~~~~~~----~~~~~~~~~~~~Gw~~~l~  158 (178)
T 1xfs_A           83 EKRLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSSGTRYTACAMHNTPG----QRKLHEEMGFHEGWGTTIT  158 (178)
T ss_dssp             TTEEEEESSEEGGGEECCC-----------CCEEEEEEEECSSSEEEEEEEECSSHH----HHHHHHTTTHHHHHHHHHH
T ss_pred             CCEEEEEEEEcCCCCccccccccccccccccEEEEEEEEECCCCEEEEEEEEcCCHH----HHHHHHhhhHHHHHHHHHH
Confidence            778888864211   10000     0    356788899987789999998852110    11111     244566777


Q ss_pred             HHHHHHh
Q 031700          145 EVDDYIL  151 (154)
Q Consensus       145 ~ie~~l~  151 (154)
                      +|+++|.
T Consensus       159 ~L~~~le  165 (178)
T 1xfs_A          159 QLEELLK  165 (178)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777764

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.81  E-value=6.6e-08  Score=70.52  Aligned_cols=138  Identities=13%  Similarity=0.154  Sum_probs=88.5

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccC-cccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCC
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFS-HDYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p-~~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~   82 (154)
                      ..+..+..|+||+++||+++.|.. .+.+|++ ... .+...+++. .+|..-++.+.  +|...  ...-++.+++ +.
T Consensus        13 ~~i~~~r~i~Ap~e~Vw~a~Tdpe-~l~~W~~p~~~-~~~~~~~d~-r~GG~~~~~~~~~~G~~~--~~~g~~~ev~-p~   86 (168)
T 3uid_A           13 LTLTITAEFAAPVTRIWQIYADPR-QLEKVWGPPSH-PATVVDHDL-RPGGRVTYFMTGPDGEKY--AGYWEITAVD-EP   86 (168)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHSHH-HHHHHHCCTTS-CCEEEEECC-STTCEEEEEEECTTSCEE--EEEEEEEEEE-TT
T ss_pred             CEEEEEEEEcCCHHHHHHHhCCHH-HHhhEeCCCCe-eeeEEEEcc-cCCcEEEEEEECCCCCEE--eeEEEEEEEe-CC
Confidence            468899999999999999999885 6888854 222 223344554 45544444443  66543  2677888896 67


Q ss_pred             cEEEEEEEe----cCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhh-----HHHHHHHHHHHHHHHHhhC
Q 031700           83 KVVTYKVID----GDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSV-----IKDFALKNFQEVDDYILKA  153 (154)
Q Consensus        83 ~~~~Y~~ie----g~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~-----~~~~~~~~~k~ie~~l~~~  153 (154)
                      ++|.|+..-    |.+.........++++.+.++||+++++..|...    ...+.     ..+....++.+|++||.+.
T Consensus        87 ~rlv~t~~~~~~~g~p~~~~~~s~vt~~l~~~~~gT~lt~~~~~~~~----~~~~~~~~~g~~~GW~~~L~~L~~~l~~~  162 (168)
T 3uid_A           87 HSFSFLDGFADEDFNPNTDLPVSTNVYTFTEHDGGTRATYVGTYASA----EALQQVLDMGVIEGASSAINQIDALLTAT  162 (168)
T ss_dssp             TEEEEEEEEECTTSCBCSSCCCEEEEEEEEEETTEEEEEEEEECSCH----HHHHHHHHTTHHHHHHHHHHHHHHHTCSC
T ss_pred             cEEEEEEeeccCCCCcCCCCCcEEEEEEEEECCCCEEEEEEEecCCH----HHHHHHHHhcHHHHHHHHHHHHHHHHHhh
Confidence            778887632    2221111235678999998888999998654211    01111     2345568899999998764

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.74  E-value=1e-06  Score=64.22  Aligned_cols=137  Identities=12%  Similarity=0.107  Sum_probs=87.3

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccC-cccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCC
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFS-HDYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p-~~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~   82 (154)
                      ..++.++.|+||+++||+++.|.. .+++|++ +.+ .+...+++. .+|..-++.+.  +|...  ...-++.+++ ++
T Consensus        16 ~~i~~~~~i~Ap~e~Vw~a~tdpe-~~~~W~~p~~~-~~~~~~~d~-~~Gg~~~~~~~~~~G~~~--~~~g~v~e~~-p~   89 (175)
T 2lf2_A           16 KTITIKREFAAVRAIVWEAFTRAE-ILDQWWAPKPW-KAKTKSMDF-KEGGTWLYAMVGPNGEEH--WSICEYAIIK-PI   89 (175)
T ss_dssp             TEEEEEEEESSCHHHHHHHHTCHH-HHHHSSSSSSS-EEEEEEECC-STTCEEEEEEECSSSCEE--EEEEEECCCC-SS
T ss_pred             ceEEEEEEEcCCHHHHHHHhCCHH-HHhhCcCCCCc-cceEEEEec-cCCCEEEEEEECCCCCEE--EeEEEEEEEc-CC
Confidence            479999999999999999999995 6889965 223 233344554 55655554443  56542  2567888885 67


Q ss_pred             cEEEEEEEec----CcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhH-----HHHHHHHHHHHHHHHhh
Q 031700           83 KVVTYKVIDG----DLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVI-----KDFALKNFQEVDDYILK  152 (154)
Q Consensus        83 ~~~~Y~~ieg----~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~-----~~~~~~~~k~ie~~l~~  152 (154)
                      ++|.|+..-+    .+.........++++.|.+++|+++.+..|.+  .  ...+..     .+....++..|++||.+
T Consensus        90 ~rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~~gT~l~~~~~~~~--~--~~~~~~~~~~~~~Gw~~~L~~L~~~le~  164 (175)
T 2lf2_A           90 ERFTGKDGFTDASGKLNTEMPRSNWDMRFIDKGEITEVQYHISYDD--V--AQLEATIQMGFKEGITMAMENLDELLVS  164 (175)
T ss_dssp             SEEEEEEEEESSTTCCCTTSCCEEEEEEEEEETTEEEEEEEEECSC--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEecCCCCCcCCCCCcEEEEEEEEECCCCEEEEEEEecCC--H--HHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            7888886432    11111124567888988877899988877521  0  001111     23456678888888753

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=98.73  E-value=2.3e-07  Score=66.04  Aligned_cols=136  Identities=9%  Similarity=0.032  Sum_probs=84.1

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEE--EEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCC
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQ--VLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~--~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~   82 (154)
                      .++.++.|+||+++||+++.|.. .+.+|.+..--.+.  ..+++. .+|..-.+.+.  +|...  ...-++.+++ +.
T Consensus         3 ~i~~~r~i~Ap~e~Vw~altdp~-~~~~W~~~~~~~~~~~~~~~d~-~~Gg~~~~~~~~~~G~~~--~~~g~v~e~~-p~   77 (152)
T 3eli_A            3 DLRLEREFAVAPEALFAWVSDGA-KLLQWWGPEGLHVPADQHDLDF-TRLGPWFSVMVNGEGQRY--KVSGQVTHVK-PP   77 (152)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCHH-HHHHHCSSTTCBCCTTSBCCCC-SSSEEEEEEEECTTCCEE--EEEEEEEEEE-TT
T ss_pred             eEEEEEEECCCHHHHHHHHcCHH-HHhhccCCCCcccccceeEEcc-cCCcEEEEEEECCCCCEE--EEEEEEEEEc-CC
Confidence            57889999999999999999985 68899763211111  123443 56655555543  56532  2677888886 67


Q ss_pred             cEEEEEEEecCccc-ceeEEEEEEEEeeCCCCeEEEEEEE-EEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700           83 KVVTYKVIDGDLLK-YYKAFKGIVSVNPKGEGSLVKWACE-FEKASDDVPDPSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~-~~~~~~~t~~v~~~~~~s~v~Wt~~-~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~  151 (154)
                      ++|.|+....+... .-.....++.+.|.++||+++++-. |.. .   ...+...+.-..++..|++||.
T Consensus        78 ~~l~~~~~~~~~~~~~~~~~~v~~~l~~~~~gT~l~l~~~~~~~-~---~~~~~~~~GW~~~L~~L~~~l~  144 (152)
T 3eli_A           78 QSVGFTWGWHDDDDRRGAESHVMFIVEPCAKGARLILDHRELGD-D---EMSLRHEEGWTSSLRKLAAELA  144 (152)
T ss_dssp             TEEEEEEEEECTTSCEEEEEEEEEECCBC--CEEEEEEEESCSC-H---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEeecCCCCCCCCcEEEEEEEEECCCCEEEEEEEccCCC-H---HHHHHHHHHHHHHHHHHHHHHh
Confidence            78888865322111 1234567888888877899887643 211 0   0112333455688888888874

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=98.71  E-value=2.1e-08  Score=71.68  Aligned_cols=125  Identities=11%  Similarity=0.101  Sum_probs=81.0

Q ss_pred             cceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            5 GGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         5 ~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      ...++.++.|+||+++||+++.|.. .+++|+|.       .+++. .+|..-.+.+..| .    +.-++.+++ ++++
T Consensus         9 ~~~i~~~~~i~Ap~e~Vw~altd~~-~~~~W~~~-------~~~~~-~~Gg~~~~~~~~g-~----~~~~v~e~~-p~~~   73 (152)
T 2kew_A            9 LPDITKSITLEAPIQKVWETVSTSE-GIAKWFMP-------NDFQL-KEGQEFHLQSPFG-P----SPCKVLAVQ-APTE   73 (152)
T ss_dssp             SCCEEEEEEECSCHHHHHHHSSSSH-HHHHHHCS-------CCCCS-CSSCCBCSSSSCC-S----CCBEEEEEE-TTTE
T ss_pred             ccEEEEEEEECCCHHHHHHHHhCHH-HHHHhcCC-------CCCCC-CCCCEEEEEecCC-c----eEEEEEEEe-CCcE
Confidence            4579999999999999999999996 79999984       13443 4555444444333 2    355778886 5678


Q ss_pred             EEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEE-EEeCCCCCCC----h----hhHHHHHHHHH-HHHHHHHh
Q 031700           85 VTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACE-FEKASDDVPD----P----SVIKDFALKNF-QEVDDYIL  151 (154)
Q Consensus        85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~-~e~~~~~~~~----~----~~~~~~~~~~~-k~ie~~l~  151 (154)
                      +.|+...+       ....++++.|.++||+++++.+ |...++..+.    .    +...+....++ .+|++||.
T Consensus        74 l~~~~~~~-------~~~~~~~l~~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~L~~~le  143 (152)
T 2kew_A           74 LSFEWDTE-------GWVVTFQLEDLGEKTGFTLIHSGWKEPNQVIGKANEKSSVVRGKMDGGWTGIVNERLRKAVE  143 (152)
T ss_dssp             EEEECTTS-------CCEEEEEEECCSSCEEEEEEECCSSCCSBCSSSSSSBHHHHHHHHHHHHHHHTTTHHHHHHT
T ss_pred             EEEEEccC-------CEEEEEEEEECCCCEEEEEEEEeccCcccccccccchhHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            88876433       2346788888877899988764 3211001110    1    12234456677 78887764

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.70  E-value=3.4e-07  Score=66.05  Aligned_cols=136  Identities=11%  Similarity=0.117  Sum_probs=88.1

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCc-ccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCC
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSH-DYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~-~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~   82 (154)
                      ..++.++.|+||+++||+++.|.. .+++|++. .+ .+...+++. .+|..-++.+.  +|...   +.-++.+++ ++
T Consensus         8 ~~i~~~~~i~Ap~e~Vw~a~tdpe-~~~~W~~p~~~-~~~~~~~d~-~~Gg~~~~~~~~~~G~~~---~~g~v~e~~-p~   80 (164)
T 2l9p_A            8 NKIIFTRTFSAPINKVFDAYTKRE-LFEQWFHPQDA-SVTVYDFNA-TKGGSAFYAIQAPQMISY---TIAEYLQVD-AP   80 (164)
T ss_dssp             SEEEECCEESSCHHHHHHHHHCHH-HHTTTCCCTTC-EEEEEECCC-STTEEEEEEEEETTEEEE---EEEEESCCB-TT
T ss_pred             ceEEEEEEeCCCHHHHHHHhCCHH-HHHhccCCCCc-eeeEEEEec-cCCCEEEEEEECCCCCEE---EEEEEEEEc-CC
Confidence            478999999999999999999995 68899652 22 233345664 56665455443  44321   567888885 67


Q ss_pred             cEEEEEEEecC----cccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhh-----HHHHHHHHHHHHHHHHhh
Q 031700           83 KVVTYKVIDGD----LLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSV-----IKDFALKNFQEVDDYILK  152 (154)
Q Consensus        83 ~~~~Y~~ieg~----~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~-----~~~~~~~~~k~ie~~l~~  152 (154)
                      ++|.|+...++    +.........++++.+.+++|+++.+..|.+.    ...+.     ..+....++..|++||.+
T Consensus        81 ~rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~~gT~l~~~~~~~~~----~~~~~~~~~~~~~Gw~~~L~~L~~~le~  155 (164)
T 2l9p_A           81 YYIEYLDYFATSKGEKDTSMPGMHITLNFEEVKGKTTVTSTSTFPTE----SAAQQAIDMGVETGMNSTLNQLEKLLNQ  155 (164)
T ss_dssp             TEEEEEEEEEBTTBSCCSSSCCEEEEEEECCCSSSEEEEEEEECSST----THHHHHHHHTHHHHHHHHHHHHHHHHHS
T ss_pred             CEEEEEEEecCCCCCccCCCCceEEEEEEEECCCCEEEEEEEEcCCH----HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            78888865322    10011235678999988778999988765321    11122     234456778888888754

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=98.67  E-value=3.5e-07  Score=65.29  Aligned_cols=131  Identities=13%  Similarity=0.078  Sum_probs=84.3

Q ss_pred             cceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            5 GGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         5 ~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      ...++.++.|+||+++||+++.|.. .+++|.|.    +   +++. .+|..-.+....|..    +.-++.+++ +.++
T Consensus         8 ~~~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~~----~---~~~~-~~Gg~~~~~~~~g~~----~~g~v~e~~-p~~~   73 (151)
T 3q63_A            8 NRTVVVERQISHPPEKLWRALTQPH-LIEEWLMK----N---DFKP-AVGHRFNISADWGGV----LDCEVLAVE-PNKT   73 (151)
T ss_dssp             -CEEEEEEEESSCHHHHHHHHHCHH-HHHHHSCE----E---CCCS-STTCEEEEECTTSCE----EEEEEEEEE-TTTE
T ss_pred             CCeEEEEEEeCCCHHHHHHHHcCHH-HHHhhcCc----C---CCcc-CCCCEEEEECCCCCE----EEEEEEEEe-CCCE
Confidence            4579999999999999999999995 78999982    2   3443 566665555333432    566788885 6778


Q ss_pred             EEEEEEecC--cccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700           85 VTYKVIDGD--LLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        85 ~~Y~~ieg~--~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~  151 (154)
                      |.|+...++  .... ..-..++++.|.++||+++++-..-+..+ ...-....+.-..++..|++||.
T Consensus        74 l~~~~~~~~~~~~~~-~~s~v~~~l~~~~~gT~l~l~~~g~~~~~-~~~~~~~~~GW~~~L~~L~~~le  140 (151)
T 3q63_A           74 LSYTWNLAHQDPAFD-LRSVVTFTLTPTPTGTHLRMEQSGFRPDQ-RRAYGGAKMGWPQFFEKLEQLLD  140 (151)
T ss_dssp             EEEECBBCCSSTTTC-BCCEEEEEEEECSSSEEEEEEEECCCTTC-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEecCCCCCCCC-CCeEEEEEEEEcCCCEEEEEEEeCCCcch-HHHHHhhhhCHHHHHHHHHHHHh
Confidence            888875432  1111 22346788889877899998876332111 00011223445677888888874

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=98.64  E-value=9.9e-07  Score=65.32  Aligned_cols=122  Identities=7%  Similarity=0.000  Sum_probs=81.6

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEE
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      ..++.++.|+||+++||+++.|.. .+++|+|. ....++      .+|..-.+.+.+   ..  ..-++.+++ ++++|
T Consensus        36 ~~i~~~~~i~Ap~e~VW~altdp~-~l~~W~~~-~~~~d~------~~Gg~~~~~~~~---~~--~~~~v~e~~-p~~rl  101 (184)
T 2nn5_A           36 IYFGTERAISASPQTIWRYLTETD-KLKQWFPE-LEIGEL------GVNGFWRFILPD---FE--ETMPFTDYA-EEKYL  101 (184)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHH-HHHHHCTT-EEEEEC------STTCEEEEEETT---EE--EEEEEEEEE-TTTEE
T ss_pred             cEEEEEEEeCCCHHHHHHHHcCHH-HHHHhCCC-cccccc------CCCCEEEEEEeC---CC--ceEEEEEec-CCCEE
Confidence            368899999999999999999996 79999983 322222      334444455533   11  456788886 56678


Q ss_pred             EEEEEecCcccceeEEEEEEEEee-CCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNP-KGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~-~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      .|+.- +        ...++++.| .+++|+++++-.|...-.  .......+....++.+|+++|..
T Consensus       102 ~~~~~-~--------~~v~~~l~~~~~~gT~l~~~~~~~~g~~--~~~~~~~~GW~~~L~~Lk~~le~  158 (184)
T 2nn5_A          102 GVTWD-T--------GIIYFDLKEQAPHQTLLVFSESLPENFT--TPRHKDIAGWSIVLNRLKQVVET  158 (184)
T ss_dssp             EEEET-T--------EEEEEEEEEEETTEEEEEEEEEECTTCS--SCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEc-C--------eEEEEEEEECCCCCEEEEEEEeccCCcc--chhhHHHHHHHHHHHHHHHHHhc
Confidence            88762 1        456888999 678899999944432111  11223445667788889888864

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=98.52  E-value=5.1e-07  Score=67.08  Aligned_cols=126  Identities=11%  Similarity=0.159  Sum_probs=84.3

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcC---------------CCceeee
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD---------------GSPIVKV   70 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~---------------G~~~~~~   70 (154)
                      ..++.++.|+||+++||+++.|.. .+++|.+. .      +++. .+|..-.+.+..               |...  .
T Consensus        19 ~~i~~~~~i~Ap~e~Vw~altdpe-~~~~W~~~-~------~~d~-~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~~~--~   87 (191)
T 2k5g_A           19 QSIRFERLLPGPIERVWAWLADAD-KRARWLAG-G------ELPR-QPGQTFELHFNHAALTAETAPARYAQYDRPI--V   87 (191)
T ss_dssp             SSEEEEEEESSSSHHHHHHHHCHH-HHTTTSCC-C------CCCS-STTCEEEEEECGGGSCCSSCCSSCSGGGSCE--E
T ss_pred             CeEEEEEEeCCCHHHHHHHHcCHH-HHhhcCCC-C------CCCc-cCCCEEEEEEcCCccccccCcccccccCCCc--e
Confidence            468999999999999999999996 68999984 1      3443 567766776642               1222  1


Q ss_pred             eeEEEEeeeCCCcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEE-EEeCCCCCCChhhH---HHHHHHHHHHH
Q 031700           71 STEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACE-FEKASDDVPDPSVI---KDFALKNFQEV  146 (154)
Q Consensus        71 ~kErl~~~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~-~e~~~~~~~~~~~~---~~~~~~~~k~i  146 (154)
                      +.-++.+++ ..++|.|+...++. .  .....++++.+.+++|+++++-+ |.       ..+..   .+....++.+|
T Consensus        88 ~~g~v~e~~-pp~rl~~~~~~~~~-~--~~~~v~~~l~~~~~gT~l~~~~~~~~-------~~~~~~~~~~GW~~~L~~L  156 (191)
T 2k5g_A           88 ARHTLLRCE-PPRVLALTWGGGAG-E--APSEVLFELSEAGEQVRLVLTHTRLA-------DRAAMLDVAGGWHAHLAVL  156 (191)
T ss_dssp             EEEEEEEEE-TTTEEEEECCCCSS-S--SCCEEEEEEEECSSSEEEEEEEECCC-------SHHHHHHHTTTTTTHHHHH
T ss_pred             eEEEEEEec-CCCEEEEEeecCCC-C--CCEEEEEEEEEcCCCEEEEEEEecCC-------CHHHHHHHHHhHHHHHHHH
Confidence            567888886 77788887654432 1  12346888888877899888876 42       12211   12234677778


Q ss_pred             HHHHhhC
Q 031700          147 DDYILKA  153 (154)
Q Consensus       147 e~~l~~~  153 (154)
                      +++|...
T Consensus       157 ~~~le~~  163 (191)
T 2k5g_A          157 AGKLAGQ  163 (191)
T ss_dssp             HHHHHTS
T ss_pred             HHHHCCC
Confidence            7777543

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=98.51  E-value=1.8e-06  Score=62.59  Aligned_cols=97  Identities=9%  Similarity=0.069  Sum_probs=57.4

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCC-CcEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEA-NKVV   85 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~-~~~~   85 (154)
                      ..+.++.|++|+++||+.+.|+. .+|.|+| .++++. .+.+     +-+..+..+.++    ++=|++. |.+ .-..
T Consensus        28 ~~~~si~I~ap~eeVy~~~~D~e-~lP~W~~-~l~~~~-~~~~-----~~w~a~~~p~G~----v~v~~~~-~~~~gv~d   94 (156)
T 2qpv_A           28 SRIIHLSVEKPWAEVYDFAANPG-NMPRWAA-GLAGGL-EADG-----EDWIAKGGPLGE----VRVNFAP-HNEFGVID   94 (156)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCGG-GGGGTCG-GGTTCC-EEET-----TEEEEECSSSCE----EEEEECC-CCSSCBCC
T ss_pred             ceEEEEEEcCCHHHHHHHHHChh-hHHHHHH-hhhhhc-ccCC-----CcEEEeccCCCc----EEEEEec-CCCceEEE
Confidence            57899999999999999999996 6999999 566652 2211     222232111112    2222221 111 1122


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEE
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACE  121 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~  121 (154)
                      .|..+.++.     ...+.+++.|.++||+|+|+..
T Consensus        95 ~~~~l~~g~-----~~~~~~rv~p~g~GTeV~~tl~  125 (156)
T 2qpv_A           95 HVVTLPDGL-----KVYNALRVTPNGSGTEVSFTLL  125 (156)
T ss_dssp             EEEECTTSC-----EEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEecCCCc-----EEEEEEEEEeCCCCEEEEEEEe
Confidence            344433322     1223578888877899999983

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=98.38  E-value=1.1e-06  Score=61.91  Aligned_cols=125  Identities=9%  Similarity=0.024  Sum_probs=78.7

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEE
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      ..++.++.|+||+++||+++.|.. .+.+|.+.. ..     .+. .+|..  +.+.+|.     +.=++.+++ ++++|
T Consensus        11 ~~i~~~~~i~ap~e~Vw~altdp~-~~~~W~~~~-~~-----~d~-~~Gg~--~~~~~G~-----~~g~v~e~~-p~~~l   74 (145)
T 1x53_A           11 CKITLKETFLTSPEELYRVFTTQE-LVQAFTHAP-AT-----LEA-DRGGK--FHMVDGN-----VSGEFTDLV-PEKHI   74 (145)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHH-HHHHHSCSC-CB-----CCC-STTCC--CBBTTTT-----EECCEEEEE-TTTEE
T ss_pred             cEEEEEEEECCCHHHHHHHhCCHH-HHHHhcCCC-ce-----EEC-CCCCE--EEEECCe-----eEEEEEEEe-CCCEE
Confidence            468999999999999999999985 689998632 22     222 23332  3333553     233566675 77788


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHH-HHHHHHHHHh
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALK-NFQEVDDYIL  151 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~-~~k~ie~~l~  151 (154)
                      .|+--..+.... .....++++.+.+++|+++++-..-+...    .+...+.... ++..|+++|-
T Consensus        75 ~~~~~~~~~~~~-~~~~v~~~l~~~~~gT~l~~~~~~~~~~~----~~~~~~Gw~~~~l~~L~~~le  136 (145)
T 1x53_A           75 VMKWRFKSWPEG-HFATITLTFIDKNGETELCMEGRGIPAPE----EERTRQGWQRYYFEGIKQTFG  136 (145)
T ss_dssp             EEEEEETTSCTT-CCEEEEEECCBCSSCEEEEEEEEEEEHHH----HHHHHHTTHHHHHHHHHHHTC
T ss_pred             EEEEecCCCCCC-CcEEEEEEEEECCCCEEEEEEEECCCHHH----HHHHHhchhHHHHHHHHHHHh
Confidence            888654432111 12356788888878899999855443221    2233333455 6888888774

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=98.28  E-value=2.3e-05  Score=56.50  Aligned_cols=129  Identities=9%  Similarity=0.049  Sum_probs=79.7

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEE
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      ..++.+..|+||+++||+++.|-. .+.+|.++...+.++      .+|..  +.+.+| .    +.=++.+++ +.++|
T Consensus        19 ~~i~~~r~~~ap~e~Vw~A~Tdpe-~l~~W~~g~~~~~d~------~~GG~--~~~~~G-~----~~g~v~ev~-p~~rl   83 (158)
T 3ni8_A           19 MSFEITEEYYVPPEVLFNAFTDAY-TLTRLSRGSLAEVDL------KVGGK--FSLFSG-S----ILGEFTEIT-KPHKI   83 (158)
T ss_dssp             CCEEEEEEESSCHHHHHHHHHCHH-HHHHHTTTSCCEECC------STTCE--EEETTT-T----EEEEEEEEE-TTTEE
T ss_pred             ceEEEEEEECCCHHHHHHHhcCHH-HHHhhcCCCccEEEc------cCCCE--EEEecC-C----EEEEEEEEe-CCcEE
Confidence            468899999999999999999985 688999732222222      33433  334455 2    345677786 56777


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCC---hhhHHHHHHH-HHHHHHHHH
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPD---PSVIKDFALK-NFQEVDDYI  150 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~---~~~~~~~~~~-~~k~ie~~l  150 (154)
                      .|+---.+.... ..-..++.+.+. +++|+++.+-+--+..+....   .+...+.-.. ++..|++||
T Consensus        84 v~tw~~~~~~~~-~~s~vt~~l~~~~~~~T~ltl~~~g~~~~~~~~~~~~~~~~~~GW~~~~L~~Lk~~L  152 (158)
T 3ni8_A           84 VEKWKFRDWNEC-DYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVIL  152 (158)
T ss_dssp             EEEEEETTSCSS-CCEEEEEEEEEEETTEEEEEEEEECCCSSCTTCCCCHHHHHHHHHHHTHHHHHHHTS
T ss_pred             EEEEEecCCCCC-CcEEEEEEEEecCCCCEEEEEEEEccCchhhhccchhHHHHHhChhHHHHHHHHHHh
Confidence            776543222111 123568888885 678998887664333321111   2233444556 588888887

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=98.26  E-value=3.1e-06  Score=62.61  Aligned_cols=121  Identities=11%  Similarity=0.110  Sum_probs=79.9

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEE
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      ..++.++.|++|+++||+++.|.. .+++|++..       +++. .+|..-.+.+..        .-++.+++ +.++|
T Consensus        21 ~~i~~~r~i~Appe~Vw~alTdpe-~l~~W~~p~-------~~d~-~~Gg~~~~~~~~--------~g~v~e~~-pp~rl   82 (181)
T 4fpw_A           21 RSIIIRQRYDAPVDEVWSACTDPN-RINRWFIEP-------KGDL-REGGNFALQGNA--------SGDILRCE-PPRRL   82 (181)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHH-HHHHHSCCE-------ESCC-STTCEEEESSSC--------EEECCEEE-TTTEE
T ss_pred             ceEEEEEEECCCHHHHHHHHcChH-HHhhccCCC-------ccCC-CCCCEEEEEecC--------CEEEEEEc-CCcEE
Confidence            368899999999999999999985 689998632       3443 556553333221        22556675 77888


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      .|+...++.    .....++.+.|.+++|+++++-+..+. +   ......+.-..++..|++||..
T Consensus        83 ~~tw~~~~~----~~s~vt~~l~~~~~gT~Ltl~~~~~~~-e---~~~~~~~GW~~~L~~L~~~L~G  141 (181)
T 4fpw_A           83 TISWVYEGK----PDSEVELRLSEEGDGTLLELEHATTSE-Q---MLVEVGVGWEMALDFLGMFIRG  141 (181)
T ss_dssp             EEEEBCTTS----CCEEEEEEEEEETTEEEEEEEEEESCH-H---HHHHHHHHHHHHHHHHHHHC--
T ss_pred             EEEEEcCCC----CcEEEEEEEEECCCcEEEEEEEEcCCH-H---HHHHHHHhHHHHHHHHHHHhCC
Confidence            898764432    134578888888788999888765321 0   1122334456788889888853

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=98.12  E-value=0.0001  Score=54.99  Aligned_cols=120  Identities=11%  Similarity=0.115  Sum_probs=77.0

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      .+..+..+++|+++||+++.|-. .+.+|++.    +   +++. .+|..-  .+..+      ..-++.+++ ..++|.
T Consensus        33 ~l~i~R~f~Ap~e~VW~AlTdpe-~l~~W~~~----~---~~d~-r~GG~~--~~~~~------~~g~v~ev~-pp~rL~   94 (192)
T 2luz_A           33 SIIIRQRYDAPVDEVWSACTDPN-RINRWFIE----P---KGDL-REGGNF--ALQGN------ASGDILRCE-PPRRLT   94 (192)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHH-HHTTTSCC----E---EECC-STTSEE--EETTS------EEEEEEEEE-TTTEEE
T ss_pred             EEEEEEEeCCCHHHHHHHHcCHH-HHheeeCC----C---cccC-ccCcEE--Eeecc------ccceEEEEe-cCeeEE
Confidence            57788889999999999999985 78899873    2   2443 445432  33221      123566785 677888


Q ss_pred             EEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      |+--..+..    .-..++.+.|.++||+++.+=...+..    .......--..+|..|++||..
T Consensus        95 ~tw~~~~~~----~~~vt~~L~~~g~gT~Ltl~h~~~~~~----~~~~~~~GW~~~Ld~L~~~L~g  152 (192)
T 2luz_A           95 ISWVYEGKP----DSEVELRLSEEGDGTLLELEHATTSEQ----MLVEVGVGWEMALDFLGMFIRG  152 (192)
T ss_dssp             EEEEESSSC----EEEEEEEEEEETTEEEEEEEEEESCHH----HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEeecCCC----CceEEEEEEEcCCcEEEEEEEECCCHH----HHHHHhccHHHHHHHHHHHhCC
Confidence            886443321    234688898988889988776542110    0122223346788999999863

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.05  E-value=1.2e-05  Score=67.86  Aligned_cols=110  Identities=7%  Similarity=0.080  Sum_probs=85.1

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCC-CCCCcEEEEEEcCCCceeeeeeEEE--EeeeCCCc
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDG-KAPGSVRLITYADGSPIVKVSTEKI--ENVDEANK   83 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~-~~~GsvR~~~~~~G~~~~~~~kErl--~~~D~~~~   83 (154)
                      .++.++.|++|+++||+.+.+.. .+++|.| -...++++.+.+ -.+|+.- +.+..|..    +.-++  +.+ +..+
T Consensus         2 ~~~~~~~i~~p~~~v~~~~~~~~-~~~~~~p-~~~~~~~~~~~~~~~~G~~~-~~~~~~~~----w~~~~~~t~~-~~~~   73 (516)
T 3oh8_A            2 SLTTSHFIPFPREMVWDWHTRKG-AVARLTP-PFIPLNPITQAERLADGTTI-FSLPAGLK----WVARHDLSGF-LNGS   73 (516)
T ss_dssp             CEEEEEEESSCHHHHHHHHHSTT-HHHHHSC-TTSSCEECSCCSCSSSCEEE-EECSTTCE----EEEEECGGGC-BTTT
T ss_pred             eEEEEEEccCCHHHHHHHhcCcc-hHHHhCC-CCCceEEecCCCCCcCCeEE-EecCCCcE----EEEEEccccc-cCCC
Confidence            57889999999999999999996 6899999 577888775432 3678887 77765432    44556  767 4778


Q ss_pred             EEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeC
Q 031700           84 VVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKA  125 (154)
Q Consensus        84 ~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~  125 (154)
                      .+...+..|++. .|.++.-+..|.+.++||+++.+++|...
T Consensus        74 ~F~d~~~~gp~~-~~~~w~h~h~f~~~~~gt~~~d~~~~~~p  114 (516)
T 3oh8_A           74 RFTDVCLTAPVK-ALANWRHVHNFVDQDGGTLITDSVSTRLP  114 (516)
T ss_dssp             EEEEECCSCSSG-GGSSCEEEEEEEEETTEEEEEEEEECSSC
T ss_pred             eEEEEeccCccc-ceeeeEEEEEEEEcCCCcEEEEEEEeeCc
Confidence            899999888742 26777788889888778999999999743

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=98.04  E-value=0.0014  Score=47.72  Aligned_cols=136  Identities=14%  Similarity=0.164  Sum_probs=83.9

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCC--CceeeeeeEEEEeeeCCCcE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADG--SPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G--~~~~~~~kErl~~~D~~~~~   84 (154)
                      .+..+..|++|++++|+++.|.. ..|+|.| .+.++++++-++ + -.+-.+.+...  .....++-.+-...|.+ .+
T Consensus        28 ~~k~~~~v~~s~~~v~~~l~D~~-~~~~W~~-~~~~~~vle~~~-~-~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~-g~  102 (189)
T 3qsz_A           28 EFRGEVRLKAAADDVVKVLRDAN-AFRQWMP-DVAASELLKATD-T-EQYHYLDNSAPWPVSNRDGVYHFTYEKAGD-GA  102 (189)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCGG-GGGGTST-TEEEEEEEEECS-S-EEEEEEEECCSSSCCCEEEEEEEEEEECTT-SC
T ss_pred             EEEEEEEEECCHHHHHHHHHhHH-HhhhHHH-hcCEEEEEeecC-C-ceEEEEEeecCCCcCCcceEEEEEEEECCC-Ce
Confidence            57888999999999999999996 6999999 788998887532 1 34444554421  11101222222222333 34


Q ss_pred             EEEEEEecCc-cc------ceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCCCCChhhHH-----HHHHHHHHHHHHHHh
Q 031700           85 VTYKVIDGDL-LK------YYKAFKGIVSVNPKG-EGSLVKWACEFEKASDDVPDPSVIK-----DFALKNFQEVDDYIL  151 (154)
Q Consensus        85 ~~Y~~ieg~~-~~------~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~~~~~~~~~-----~~~~~~~k~ie~~l~  151 (154)
                      +......... .+      ..+.+.+.+.+.| + ++|.+++....+|.+. .  |..+.     +.+..++++|.+++.
T Consensus       103 ~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G~-i--P~~lvn~~~~~~~~~~l~~L~k~~~  178 (189)
T 3qsz_A          103 ITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGGS-I--PSWLANQTVVETPFGTLKALRSHLR  178 (189)
T ss_dssp             EEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCSS-S--CHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred             EEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCCC-C--CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4433333221 11      2567788899999 6 5799999999998854 2  33222     444566666666654

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=97.83  E-value=3.4e-05  Score=55.14  Aligned_cols=130  Identities=14%  Similarity=0.142  Sum_probs=74.5

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCccc------ceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeC
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDY------KSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE   80 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v------~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~   80 (154)
                      .+..++.|++|+++||+++.+.   +.+|++...      ..+++ +-.|   |.. .+...+|...   ..=++.++| 
T Consensus         5 ~i~~~r~~~Ap~e~Vw~A~Td~---l~~W~~p~~~~~~~~~~~~~-dr~G---G~~-~~~~~~G~~~---~~g~v~ev~-   72 (155)
T 1zxf_A            5 FVRHSVTVKADRKTAFKTFLEG---FPEWWPNNFRTTKVGAPLGV-DKKG---GRW-YEIDEQGEEH---TFGLIRKVD-   72 (155)
T ss_dssp             CEEEEEEESSHHHHHHHHHTTC---SSSSSSGGGSTTTTCSSCEE-ETTT---TEE-ECCCTTTSCC---CCEEEEEEE-
T ss_pred             eEEEEEEEeCCHHHHHHHHHhh---HHhhcCCCccccCCCceEEE-ECCC---CEE-EEECCCCCeE---eEEEEEEEC-
Confidence            6889999999999999999982   678874333      23443 2111   343 3333466432   123667785 


Q ss_pred             CCcEEEEEE-EecCc--ccceeEEEEEEEEeeCCCC-eEEEEEEEEEeCCCCCC-ChhhHHH----HHHHHHHHHHHHHh
Q 031700           81 ANKVVTYKV-IDGDL--LKYYKAFKGIVSVNPKGEG-SLVKWACEFEKASDDVP-DPSVIKD----FALKNFQEVDDYIL  151 (154)
Q Consensus        81 ~~~~~~Y~~-ieg~~--~~~~~~~~~t~~v~~~~~~-s~v~Wt~~~e~~~~~~~-~~~~~~~----~~~~~~k~ie~~l~  151 (154)
                      +.++|.|+- .+++.  .+. .....|+++.+.++| |+++.+-..-...+  + ......+    --..++.+|+++|.
T Consensus        73 pp~rl~~tw~~~~~~~~~~~-~~s~vt~~l~~~~~g~T~ltl~~~~~~~~~--~~~~~~~~~~~~~GW~~~l~~L~~~l~  149 (155)
T 1zxf_A           73 EPDTLVIGWRLNGFGRIDPD-NSSEFTVTFVADGQKKTRVDVEHTHFDRMG--TKHAKRVRNGMDKGWPTILQSFQDKID  149 (155)
T ss_dssp             TTTEEEEECCCSSSSSCCCS-SCCCEEEEEEEETTTEEEEEEEECSSTTSC--HHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEecCCCCCCCCC-CcEEEEEEEEECCCCcEEEEEEEecccccc--cchhHHHHHHHHhhHHHHHHHHHHHHh
Confidence            777888884 23311  111 123468888888665 98877754321110  1 1112222    23577788888875

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.80  E-value=0.00041  Score=49.00  Aligned_cols=98  Identities=10%  Similarity=0.199  Sum_probs=65.4

Q ss_pred             cceEEEEEEEcCCH-HHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCc
Q 031700            5 GGKLEVELEVKSSA-DKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         5 ~~~~~~~~~i~a~~-~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~   83 (154)
                      ..+++.++.|+||+ ++||++++.-. .|..|+.+.+.    ..|.      .-.+...+...    ..-+|+.++ +++
T Consensus         3 k~~i~~e~~i~A~~~~~VW~~IStPe-gL~~Wfad~v~----~~g~------~~~F~w~~~~~----~~~~v~~~~-~~~   66 (136)
T 2lio_A            3 KEKIHLEYLLNATSKNILWSAISTPT-GLEDWFADKVV----SDDK------TVTFCWGKTEQ----RQAGIVAIR-AYS   66 (136)
T ss_dssp             CEEEEEEEEECTTSCTHHHHGGGSHH-HHTTTSSSEEE----EETT------EEEEESSSSSE----EEEEEEEEE-TTT
T ss_pred             CCcEEEEEEecCChHHHHHHHhCChh-hhhcccCCCCc----ccCc------eEEEEeCCCCc----EeEEEEEEc-CCC
Confidence            56899999999999 99999999885 78999986543    2332      22333332122    456788885 788


Q ss_pred             EEEEEEEecCcccceeEEEEEEEEeeCC--CCeEEEEEEEEE
Q 031700           84 VVTYKVIDGDLLKYYKAFKGIVSVNPKG--EGSLVKWACEFE  123 (154)
Q Consensus        84 ~~~Y~~ieg~~~~~~~~~~~t~~v~~~~--~~s~v~Wt~~~e  123 (154)
                      .++|+-.+-+.    .++...+++...+  +++.++-+ +|.
T Consensus        67 ~i~FrW~~~~~----~~~~~e~~l~~~~~t~~~~L~vt-dFa  103 (136)
T 2lio_A           67 FIRFHWLDDEN----ERDYFEIKMSYNELTGDYVLEIT-DFS  103 (136)
T ss_dssp             EEEEEESSSSS----SSCEEEEEEEECTTTSCEEEEEE-EEE
T ss_pred             EEEEEccCCCC----CceEEEEEEEecCCCCcEEEEEe-cCC
Confidence            89999865321    2233455655553  67888777 554

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=97.55  E-value=0.0063  Score=44.96  Aligned_cols=140  Identities=11%  Similarity=-0.015  Sum_probs=85.1

Q ss_pred             eEEEEEEEc-CCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCC-ceeeeeeEE-EEeeeCCC
Q 031700            7 KLEVELEVK-SSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGS-PIVKVSTEK-IENVDEAN   82 (154)
Q Consensus         7 ~~~~~~~i~-a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~-~~~~~~kEr-l~~~D~~~   82 (154)
                      .+..+..|+ +|++++++++.|.. ..++|.| .+.++++++-+  + ..+.++.+. +.. ..-.++-.+ ...+|+..
T Consensus        53 ~~k~~~~i~~~~~~~v~~~l~d~~-~r~~Wd~-~~~~~~vle~~--~-~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g  127 (214)
T 1ln1_A           53 EYKVFGVLEDCSPTLLADIYMDSD-YRKQWDQ-YVKELYEQECN--G-ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEG  127 (214)
T ss_dssp             EEEEEEEETTSCHHHHHHHHHCHH-HHHHHCT-TEEEEEEEEET--T-EEEEEEEECCCTTSCCEEEEEEEEEEEECSTT
T ss_pred             EEEEEEEECCCCHHHHHHHHcCHH-HHHHHHH-HHhhEEEeccC--C-CEEEEEEEEcCCCCCCceEEEEEEEEecccCC
Confidence            467888995 99999999999985 6899999 68888888753  2 456666665 221 100122222 12244343


Q ss_pred             cEE---EEEEEecCcc---cc---eeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChh---hHHHHHHHHHHHHHHH
Q 031700           83 KVV---TYKVIDGDLL---KY---YKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPS---VIKDFALKNFQEVDDY  149 (154)
Q Consensus        83 ~~~---~Y~~ieg~~~---~~---~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~---~~~~~~~~~~k~ie~~  149 (154)
                      ..+   ...-++-+..   ..   ...+.+.+.+.|. +++|.+++....+|.+. .|..-   ..+..+..+++.|.++
T Consensus       128 ~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~G~-iP~~l~n~~~~~~~~~~l~~l~k~  206 (214)
T 1ln1_A          128 RKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ-IPSWLINWAAKNGVPNFLKDMARA  206 (214)
T ss_dssp             CCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC-CCHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             CeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCCCc-ccHHHHHHHHHHHhHHHHHHHHHH
Confidence            322   1222222111   11   4567888889998 46799999999998853 32211   1223345667777777


Q ss_pred             Hhh
Q 031700          150 ILK  152 (154)
Q Consensus       150 l~~  152 (154)
                      +.+
T Consensus       207 ~~~  209 (214)
T 1ln1_A          207 CQN  209 (214)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            654

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=97.00  E-value=0.014  Score=42.02  Aligned_cols=108  Identities=10%  Similarity=0.103  Sum_probs=68.8

Q ss_pred             eEEEEEEEcCC---------HHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEe
Q 031700            7 KLEVELEVKSS---------ADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIEN   77 (154)
Q Consensus         7 ~~~~~~~i~a~---------~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~   77 (154)
                      +++..+.||-|         .+++|.-+..-.+.-..++| .+.+|++++-.+  ..-.|.++|+.+ .    ++|++. 
T Consensus         2 ~f~htvpIN~p~~p~~p~LTr~QlW~GL~~kar~p~~Fvp-~i~~c~Vlse~~--~~~~R~l~fg~~-~----i~e~vt-   72 (157)
T 2ffs_A            2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRAREPQYFVV-GLERFEILVDDG--DRLHRRLYLPGL-V----VEDEVV-   72 (157)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHHHHHHCGGGTCT-TCCEEEEEEECS--SEEEEEEEETTE-E----EEEEEE-
T ss_pred             ceeEEEecCCCCCCCCCccCHHHHHHHHHHHhcChhhccc-ccCeEEEEecCC--CeEEEEEEECCC-c----cceEEE-
Confidence            57788888875         36899998544444557788 799999997532  367899999766 3    789977 


Q ss_pred             eeCCCcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCC
Q 031700           78 VDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDD  128 (154)
Q Consensus        78 ~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~  128 (154)
                      +. ...++.|.+...... .=.+...+|.- |. +| .+-.++.|+...++
T Consensus        73 l~-~~~~v~f~~~~t~~~-~gs~ltn~Iee-~~-~g-~L~lrF~ye~~~p~  118 (157)
T 2ffs_A           73 LK-APDSAHYSIKPSAEV-AGGSLDMTIEE-PE-PG-SLFVRFAYCTRYLQ  118 (157)
T ss_dssp             EE-TTTEEEEEECCCSSS-BEEEEEEEEEE-EE-TT-EEEEEEEEEEECSC
T ss_pred             Ec-CCcEEEEEcccccCC-CCceEEEEEee-CC-CC-cEEEEEEEEccCCC
Confidence            53 677799998763211 11333333333 22 23 45556666655443

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=95.98  E-value=0.31  Score=36.04  Aligned_cols=140  Identities=11%  Similarity=0.116  Sum_probs=78.0

Q ss_pred             EEEEEEEcCCHHHHHHHH-hccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcC--CCc--eeeeeeEEEEeeeCCC
Q 031700            8 LEVELEVKSSADKFWGSI-RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD--GSP--IVKVSTEKIENVDEAN   82 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~-~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~--G~~--~~~~~kErl~~~D~~~   82 (154)
                      +..+..+++|+++||+.+ .|.. ..++|-+ .+.++++++--++. -.|-+.....  ..+  .-.++--|....++..
T Consensus        57 ~k~~~~v~~~~~~v~~~l~~d~~-~r~~Wd~-~~~~~~vle~~~~~-t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~  133 (221)
T 3p0l_A           57 FRLEVVVDQPMERLYEELVERME-AMGEWNP-NVKEIKVLQKIGKD-TFITHELAAEAAGNLVGPRDFVSVRCAKRRGST  133 (221)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTGG-GTTTSCT-TCSEEEEEEECSSS-EEEEEEEECC---CCSCCEEEEEEEEEEECSSC
T ss_pred             EEEEEEEcCCHHHHHHHHHhccc-hhhhcCc-chheEEEEEecCCC-eEEEEEeeccccCCccCCceEEEEEEEEEcCCe
Confidence            667788899999999998 5775 5889999 78899888743211 1233332222  111  1011222222223322


Q ss_pred             cEEEEEEEecCccc---c---eeEEEEEEEEeeCC-C--CeEEEEEEEEEeCCCCCCCh--hhH-HHHHHHHHHHHHHHH
Q 031700           83 KVVTYKVIDGDLLK---Y---YKAFKGIVSVNPKG-E--GSLVKWACEFEKASDDVPDP--SVI-KDFALKNFQEVDDYI  150 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~---~---~~~~~~t~~v~~~~-~--~s~v~Wt~~~e~~~~~~~~~--~~~-~~~~~~~~k~ie~~l  150 (154)
                      ..+...-++-+..+   .   ...+.+-+.+.|.+ +  +|.++|....+|.+. .|..  ... ......+++.|.+++
T Consensus       134 ~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~Lr~~~  212 (221)
T 3p0l_A          134 CVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFANHLRKRL  212 (221)
T ss_dssp             EEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222223322111   1   24455677788874 4  699999999998875 3221  111 244556777777776


Q ss_pred             h
Q 031700          151 L  151 (154)
Q Consensus       151 ~  151 (154)
                      .
T Consensus       213 ~  213 (221)
T 3p0l_A          213 E  213 (221)
T ss_dssp             C
T ss_pred             h
Confidence            5

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=95.43  E-value=0.54  Score=34.86  Aligned_cols=139  Identities=11%  Similarity=-0.096  Sum_probs=78.7

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcC--C--CceeeeeeEEEEeeeCCCc
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD--G--SPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~--G--~~~~~~~kErl~~~D~~~~   83 (154)
                      +..+.+|++|+++|++.+.|.. .-++|-+ .+.++++++--+ .--.|-+..+..  +  ...-.++--|-...++.+.
T Consensus        69 ~k~~~~v~~~~~~v~~~l~d~~-~r~~Wd~-~~~~~~vle~id-~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~  145 (224)
T 1jss_A           69 YKAQGVMDDVVNNVIDHIRPGP-WRLDWDR-LMTSLDVLEHFE-ENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGL  145 (224)
T ss_dssp             EEEEEEESSCHHHHHHHHSSST-THHHHCS-SEEEEEEEEECS-TTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEE
T ss_pred             EEEEEEEeCCHHHHHHHHhCcc-ccccccc-ceeeEEEEEEcC-CCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeE
Confidence            5778889999999999999875 4589999 788999887421 112344444432  2  1111122222222233333


Q ss_pred             EEEEEEEecCc-cc---ceeEEEEEEEEeeC-C--CCeEEEEEEEEEeCCCCCCChhhHH-----HHHHHHHHHHHHHHh
Q 031700           84 VVTYKVIDGDL-LK---YYKAFKGIVSVNPK-G--EGSLVKWACEFEKASDDVPDPSVIK-----DFALKNFQEVDDYIL  151 (154)
Q Consensus        84 ~~~Y~~ieg~~-~~---~~~~~~~t~~v~~~-~--~~s~v~Wt~~~e~~~~~~~~~~~~~-----~~~~~~~k~ie~~l~  151 (154)
                      .+...-++-+. ..   ....+.+-+.+.|. +  ++|.++|.+..+|.+. .|  ..+.     ......++.|.+++.
T Consensus       146 vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP--~~lvn~~~~~~~~~~~~~Lr~~~~  222 (224)
T 1jss_A          146 LSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP--QSAVDTAMASTLANFYSDLRKGLR  222 (224)
T ss_dssp             EEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC--HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc--HHHHHHHHHHhHHHHHHHHHHHHh
Confidence            32222222111 11   13445566778886 3  3699999999998874 32  2222     334566677777664


Q ss_pred             h
Q 031700          152 K  152 (154)
Q Consensus       152 ~  152 (154)
                      +
T Consensus       223 ~  223 (224)
T 1jss_A          223 K  223 (224)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=95.36  E-value=0.19  Score=38.74  Aligned_cols=138  Identities=11%  Similarity=0.111  Sum_probs=79.4

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcC-CCCCCCcEEEEEEc-C-CC-ceeeeeeEEEEee-eCCC
Q 031700            8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEG-DGKAPGSVRLITYA-D-GS-PIVKVSTEKIENV-DEAN   82 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG-~~~~~GsvR~~~~~-~-G~-~~~~~~kErl~~~-D~~~   82 (154)
                      +..+.++++|++.||+.+.|.. ..++|-+ .++++++++- +++.  .|-++..+ . +. ..-.++--|-..- ++..
T Consensus        90 ~k~~~~v~~~~~~v~~~L~D~~-~R~~WD~-~~~~~~vle~id~~~--ivY~~~~p~~~~~v~~RDFV~lr~~r~~~~~G  165 (258)
T 3fo5_A           90 FHMEMVVHVDAAQAFLLLSDLR-QRPEWDK-HYRSVELVQQVDEDD--AIYHVTSPALGGHTKPQDFVILASRRKPCDNG  165 (258)
T ss_dssp             EEEEEEESSCHHHHHHHHHCGG-GGGGTCT-TCCEEEEEEEEETTE--EEEEEEECCCTTCSSCEEEEEEEEEECCSSTT
T ss_pred             EEEEEEEeCCHHHHHHHHhCch-hHhHhhh-hccEEEEEEEcCCCe--EEEEEecCCccCCCCCCEEEEEEEEEeccCCC
Confidence            6678889999999999999985 6899999 7889988863 2222  23334433 2 11 1111232232211 2222


Q ss_pred             --cEEEEEEEecCccc---c---eeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhHH------HHHHHHHHHHH
Q 031700           83 --KVVTYKVIDGDLLK---Y---YKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVIK------DFALKNFQEVD  147 (154)
Q Consensus        83 --~~~~Y~~ieg~~~~---~---~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~~------~~~~~~~k~ie  147 (154)
                        ..+...-++-+..+   .   -..+.+-+.+.|. +++|.|++...-+|..  .  |...-      ..+...++++.
T Consensus       166 ~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dpG~--l--P~~~~n~~g~s~~~~~t~~~~~  241 (258)
T 3fo5_A          166 DPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATPGV--L--NYVTTNVAGLSSEFYTTFKACE  241 (258)
T ss_dssp             CCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCGGG--H--HHHHHHHHTSCCHHHHHHHHHH
T ss_pred             CEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCCCC--C--CceEEeccccchHHHHHHHHHH
Confidence              34444434432211   1   3466678888888 5679999987776621  1  11111      22345566778


Q ss_pred             HHHhhC
Q 031700          148 DYILKA  153 (154)
Q Consensus       148 ~~l~~~  153 (154)
                      +||..|
T Consensus       242 ~fl~~~  247 (258)
T 3fo5_A          242 QFLLDN  247 (258)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            887765

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=94.88  E-value=0.89  Score=34.29  Aligned_cols=50  Identities=8%  Similarity=0.017  Sum_probs=37.6

Q ss_pred             EEEEEE-cCCHHHHHHHHhccCCCCccccCcccceEEEEcC-CCCCCCcEEEEEEc
Q 031700            9 EVELEV-KSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEG-DGKAPGSVRLITYA   62 (154)
Q Consensus         9 ~~~~~i-~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG-~~~~~GsvR~~~~~   62 (154)
                      .....+ +++++++++++.|.. ..++|-| .+.+++++|- ++  -+.|.++.+.
T Consensus        76 K~~~~~~~~~~~~v~~~l~d~~-~r~~Wd~-~~~~~~vle~i~~--~~~i~y~~~~  127 (255)
T 2e3n_A           76 KATHAVKGVTGHEVCNYFWNVD-VRNDWET-TIENFHVVETLAD--NAIIIYQTHK  127 (255)
T ss_dssp             EEEEEEETCCHHHHHHHHHCGG-GHHHHCC-SEEEEEEEEEEET--TEEEEEEEEC
T ss_pred             EEEEEEcCCCHHHHHHHHhCcc-hHhhhhh-hcceeEEEEEcCC--CCEEEEEEee
Confidence            334455 499999999999985 6899999 7889998875 32  2367777665

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=92.69  E-value=2.2  Score=31.41  Aligned_cols=141  Identities=8%  Similarity=-0.037  Sum_probs=77.8

Q ss_pred             EEEEEEEcCCHHHHH-HHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcC--CCc--eeeeeeEEEEeeeCCC
Q 031700            8 LEVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD--GSP--IVKVSTEKIENVDEAN   82 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW-~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~--G~~--~~~~~kErl~~~D~~~   82 (154)
                      +..+..+++|+++|+ .++.|.. ..++|-+ .+.++++++--+.. -.|-+....+  +..  .-.++--|-...++..
T Consensus        68 ~k~~~~v~~~~~~v~~~~~~d~~-~r~~Wd~-~~~~~~vle~~~~~-t~I~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~  144 (229)
T 1em2_A           68 FILKTFLPCPAELVYQEVILQPE-RMVLWNK-TVTACQILQRVEDN-TLISYDVSAGAAGGVVSPRDFVNVRRIERRRDR  144 (229)
T ss_dssp             EEEEEEESSCHHHHHHHTTTCHH-HHTTTCT-TEEEEEEEEEETTT-EEEEEEEECCBTTTTBCCEEEEEEEEEEECSSE
T ss_pred             EEEEEEecCCHHHHHHHHHhCcc-chhhccc-ccceEEEEEecCCC-eEEEEEEecCcCCCCcCCCeeEEEEEEEEcCCE
Confidence            456677899999999 7778885 6789999 78899888742111 2233332222  221  1011222222223333


Q ss_pred             cEEEEEEEecCccc------ceeEEEEEEEEeeC-C--CCeEEEEEEEEEeCCCCCCCh--h-hHHHHHHHHHHHHHHHH
Q 031700           83 KVVTYKVIDGDLLK------YYKAFKGIVSVNPK-G--EGSLVKWACEFEKASDDVPDP--S-VIKDFALKNFQEVDDYI  150 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~------~~~~~~~t~~v~~~-~--~~s~v~Wt~~~e~~~~~~~~~--~-~~~~~~~~~~k~ie~~l  150 (154)
                      ..+...-++-+..+      ....+.+-+.+.|. +  ++|.++|....+|.+. .|..  . .+...+..+++.|.+++
T Consensus       145 ~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~l~n~~~~~~~~~~~~~Lr~~~  223 (229)
T 1em2_A          145 YLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LPRYLIHQSLAATMFEFAFHLRQRI  223 (229)
T ss_dssp             EEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333332211      13445566778875 2  5699999999988874 3321  1 12233456677777776


Q ss_pred             hh
Q 031700          151 LK  152 (154)
Q Consensus       151 ~~  152 (154)
                      .+
T Consensus       224 ~~  225 (229)
T 1em2_A          224 SE  225 (229)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=87.90  E-value=6.4  Score=28.85  Aligned_cols=141  Identities=7%  Similarity=-0.041  Sum_probs=75.2

Q ss_pred             EEEEEEEcCCHHHHHHHH--hccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcC---CC-ceeeeeeEEEEeeeCC
Q 031700            8 LEVELEVKSSADKFWGSI--RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD---GS-PIVKVSTEKIENVDEA   81 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~~~--~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~---G~-~~~~~~kErl~~~D~~   81 (154)
                      +..+..+++|+++|++.+  .|.. ..++|-+ .+.++++++--+ +...|-+.....   +. ..-.++--|-...++.
T Consensus        69 ~k~~~~v~~~~~~v~~~l~~~d~~-~r~~Wd~-~~~~~~vle~i~-~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~  145 (231)
T 2r55_A           69 YRGEGIVYGTLEEVWDCVKPAVGG-LRVKWDE-NVTGFEIIQSIT-DTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYED  145 (231)
T ss_dssp             EEEEEEESSCHHHHHHHHCC--CC-SHHHHCT-TCSEEEEEEECS-SSEEEEEEECCCBTTTTBCCEEEEEEEEEEECTT
T ss_pred             EEEEEEECCCHHHHHHHHHhhCcc-hhhhhcc-ccceeEEEEEcC-CCEEEEEEEeccccCCccCCCeEEEEEEEEEcCC
Confidence            667788899999999999  7774 6899998 688888887432 122332221111   11 1101122222223333


Q ss_pred             C-cEEEEEEEecCccc---c---eeEEEEEEEEeeC---CCCeEEEEEEEEEeCCCCCCChh---hHHHHHHHHHHHHHH
Q 031700           82 N-KVVTYKVIDGDLLK---Y---YKAFKGIVSVNPK---GEGSLVKWACEFEKASDDVPDPS---VIKDFALKNFQEVDD  148 (154)
Q Consensus        82 ~-~~~~Y~~ieg~~~~---~---~~~~~~t~~v~~~---~~~s~v~Wt~~~e~~~~~~~~~~---~~~~~~~~~~k~ie~  148 (154)
                      + ..+...-++-+..+   .   ...+.+-+.+.|.   +++|.++|....+|.+. .|..-   .+...+...++.|.+
T Consensus       146 g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~Lr~  224 (231)
T 2r55_A          146 GTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LPQNVVDSFFPRSMTRFYANLQK  224 (231)
T ss_dssp             SCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-ccHHHHHHHHhHhHHHHHHHHHH
Confidence            3 22333333322111   1   2334455667765   25799999999988764 33211   122334566677776


Q ss_pred             HHhh
Q 031700          149 YILK  152 (154)
Q Consensus       149 ~l~~  152 (154)
                      ++.+
T Consensus       225 ~~~~  228 (231)
T 2r55_A          225 AVKQ  228 (231)
T ss_dssp             HHHG
T ss_pred             HHHH
Confidence            6654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d1vjha_	120	d.129.3.1 (A:) Hypothetical protein At1G24000 {Tha	9e-35
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	5e-33
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	5e-32
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	2e-29
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	5e-28
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	1e-27
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	2e-24
d3cnwa1	138	d.129.3.8 (A:3-140) Uncharacterized protein XoxI {	9e-06

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  115 bits (290), Expect = 9e-35
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 36/149 (24%)

Query: 6   GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
           G L V+ +VK  ADKF+ +  + T                                    
Sbjct: 5   GALSVKFDVKCPADKFFSAFVEDT----------------------------------NR 30

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKWACEFE 123
           P  K    +IE VD   K +T ++   ++ KY+K  KG ++V P   G+GS V W   FE
Sbjct: 31  PFEKNGKTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFE 90

Query: 124 KASDDVPDPSVIKDFALKNFQEVDDYILK 152
           K   D+ DP  I D ++K F+++D+ IL 
Sbjct: 91  KVHKDIDDPHSIIDESVKYFKKLDEAILN 119

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score =  112 bits (281), Expect = 5e-33
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 9/154 (5%)

Query: 7   KLEVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
             E E   +    + +   + D+  L PK      K  ++LEGDG  PG+++ IT+ +GS
Sbjct: 4   TYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGG-PGTIKKITFGEGS 62

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGDLL--KYYKAFKGIVSVNPKGEGSLVKWACEFE 123
                   KI+++D+ N   +Y +I+GD L     K       V     GS++K    + 
Sbjct: 63  Q-YGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYH 121

Query: 124 KASDDVPDPSVI---KDFALKNFQEVDDYILKAN 154
              +       +   K+ A   F+ ++ Y LK +
Sbjct: 122 TKGNVEIKEEHVKAGKEKASNLFKLIETY-LKGH 154

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score =  109 bits (274), Expect = 5e-32
 Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 9/151 (5%)

Query: 7   KLEVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS 65
              +EL    SA+K + G + D  T+ PKA    YKS+++ +GDG  PG++++IT  DG 
Sbjct: 4   THVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGG-PGTLKIITLPDGG 61

Query: 66  PIVKVSTEKIENVDEANKVVTYKVIDGD-LLKYYKAFKGIVSVNPKGE-GSLVKWACEFE 123
           P +   T +I+ V++      Y VIDGD LL + ++ +  V + P  + GS+ K    F 
Sbjct: 62  P-ITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFH 120

Query: 124 KASDDVPDPSVI---KDFALKNFQEVDDYIL 151
              D V     I    +     F+ ++ Y++
Sbjct: 121 TKGDAVVPEENIKYANEQNTALFKALEAYLI 151

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score =  103 bits (257), Expect = 2e-29
 Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 9/152 (5%)

Query: 9   EVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPI 67
           E E      A + +   I D   L PK       S++ +EG+G  PG+++ I + +G P 
Sbjct: 6   ETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGG-PGTIKKINFPEGFP- 63

Query: 68  VKVSTEKIENVDEANKVVTYKVIDGD-LLKYYKAFKGIVSVNPKGE-GSLVKWACEFEKA 125
            K   ++++ VD  N    Y VI+G  +    +     + +    + G ++K + ++   
Sbjct: 64  FKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTK 123

Query: 126 SDDVPDPSVI---KDFALKNFQEVDDYILKAN 154
            +       +   K+      + V+ Y L A+
Sbjct: 124 GNHEVKAEQVKASKEMGETLLRAVESY-LLAH 154

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 99.6 bits (248), Expect = 5e-28
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 7   KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSP 66
             E E     +  + + ++               +SI+ +EG+G  PG+++ +T  +G  
Sbjct: 4   TFEDESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGNGG-PGTIKKLTLIEGGE 62

Query: 67  IVKVSTEKIENVDEANKVVTYKVIDGDLL--KYYKAFKGIVSVNPKGEGSLVKWACEFEK 124
             K    KIE VDEAN    Y ++ G  L     K       V     GS+ K   + E 
Sbjct: 63  -TKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIET 121

Query: 125 ASDDVPDPSVI---KDFALKNFQEVDDYIL 151
             D  P+       K      F+ +++Y+ 
Sbjct: 122 KGDAQPNEEEGKAAKARGDAFFKAIENYLS 151

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 98.8 bits (246), Expect = 1e-27
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 7   KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSP 66
             E E     +  K + ++   +           +S++++EG+G  PG+++ I       
Sbjct: 4   AFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGG-PGTIKKIIAIHDGH 62

Query: 67  IVKVSTEKIENVDEANKVVTYKVIDGDLL--KYYKAFKGIVSVNPKGEGSLVKWACEFEK 124
                  K++ +DEAN    Y +I G+ L     K       +     GS+ K   +F  
Sbjct: 63  -TSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHT 121

Query: 125 ASDDVPDPSV--IKDFALKNFQEVDDYIL 151
             D + +      K   L  F+ ++ Y+L
Sbjct: 122 KGDVLSETVRDQAKFKGLGLFKAIEGYVL 150

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score = 90.4 bits (224), Expect = 2e-24
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 9   EVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIV 68
             E     +  K + ++   +    +      +SI+++EG+G   G+++ IT  +G    
Sbjct: 6   RDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGG-VGTIKKITANEGDK-T 63

Query: 69  KVSTEKIENVDEANKVVTYKVIDGDLL--KYYKAFKGIVSVNPKGEGSLVKWACEFEKAS 126
               +K++ +DEAN    Y ++ G  L     K       V   G GS+ K   +F    
Sbjct: 64  SFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKG 123

Query: 127 DDVPDPSVIKD 137
           D     +V  D
Sbjct: 124 DAPLSDAVRDD 134

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Length = 138

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

 Score = 40.6 bits (94), Expect = 9e-06
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 17/132 (12%)

Query: 7   KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSP 66
                +E+  S ++ W  I    +L    +     S ++ EG       VR +   DG  
Sbjct: 3   HTTTSMEIFGSPEQVWQLIGGFNSL--PDWLPYIPSSKLTEGGR-----VRHLANPDGDT 55

Query: 67  IVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEG--SLVKWACEFEK 124
           I++    ++E  ++  +  TY +++         +   + V    E   SLV+W+  F  
Sbjct: 56  IIE----RLEVFNDKERYYTYSIMNAPF--PVTNYLSTIQVKEGTESNTSLVEWSGTFT- 108

Query: 125 ASDDVPDPSVIK 136
              +V D   I 
Sbjct: 109 -PVEVSDEEAIN 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	100.0
d1fm4a_	159	Major tree pollen allergen {European white birch (	100.0
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	100.0
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	100.0
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.97
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.94
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.72
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.66
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.65
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.42
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	99.2
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	99.15
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	99.0
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	99.0
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.88
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	98.81
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.79
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	98.6
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	98.53
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	98.22
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	97.91
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	97.8
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	97.78
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	97.59
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	96.95
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	96.82
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	95.52
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	93.99

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=100.00  E-value=3.3e-40  Score=241.18  Aligned_cols=147  Identities=23%  Similarity=0.407  Sum_probs=134.3

Q ss_pred             ceEEEEEEEcCCHHHHHHHH-hccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            6 GKLEVELEVKSSADKFWGSI-RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~-~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      .+++.|+.+++||+++|+++ +|+++++|+++|+.|++|+++|||| ++||||.|+|.+|++. .++||||+++|+++|+
T Consensus         3 ~~~~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg-~~GsIr~~~~~~~~~~-~~~KErie~iD~~~~~   80 (159)
T d1e09a_           3 FTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDG-GPGTIKKITFGEGSQY-GYVKHKIDSIDKENYS   80 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSS-STTCEEEEEECCSSSC-EEEEEEEEEEETTTTE
T ss_pred             eEEEEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCC-CcCcEEEEEEcCCCCc-EEEEEEEEEEcccccE
Confidence            46889999999999999986 7997778999999999999999997 8999999999977654 6799999999999999


Q ss_pred             EEEEEEecCcc-cceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhH---HHHHHHHHHHHHHHHhhCC
Q 031700           85 VTYKVIDGDLL-KYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVI---KDFALKNFQEVDDYILKAN  154 (154)
Q Consensus        85 ~~Y~~ieg~~~-~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~---~~~~~~~~k~ie~~l~~~~  154 (154)
                      ++|+++||+++ ..|++|..++++.|. ++||.++|+++|++.++..++|+.+   ++.+..|+|+||+||+|||
T Consensus        81 ~~y~viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt~eYe~~~~~~~~~e~~~~~~e~~~~~~K~iEayLlanp  155 (159)
T d1e09a_          81 YSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHP  155 (159)
T ss_dssp             EEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEEEecccccccEEEEEEEEEEccCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence            99999999976 469999999999998 5789999999999999998888754   5789999999999999998

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=100.00  E-value=5e-40  Score=240.24  Aligned_cols=147  Identities=20%  Similarity=0.419  Sum_probs=132.8

Q ss_pred             ceEEEEEEEcCCHHHHHHHH-hccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            6 GKLEVELEVKSSADKFWGSI-RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~-~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      .+++.++.+++||+++|+++ +|+++++|+|+|+.+++|+++||+| ++||||.|+|..|++. .++||||+++|+++|+
T Consensus         3 ~~~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg-~~GsIr~~~~~~~~~~-~~~Kerve~iD~~~~~   80 (159)
T d1fm4a_           3 FNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNG-GPGTIKKINFPEGFPF-KYVKDRVDEVDHTNFK   80 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSS-STTCEEEEECCTTSSS-SEEEEEEEEEETTTTE
T ss_pred             eEEEEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCC-CCCCEEEEEecCCCCc-eEEEEEEEEEcccccE
Confidence            36889999999999999986 7887778999999999999999997 8999999999866544 5699999999999999


Q ss_pred             EEEEEEecCcc-cceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhh---HHHHHHHHHHHHHHHHhhCC
Q 031700           85 VTYKVIDGDLL-KYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSV---IKDFALKNFQEVDDYILKAN  154 (154)
Q Consensus        85 ~~Y~~ieg~~~-~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~---~~~~~~~~~k~ie~~l~~~~  154 (154)
                      ++|+++||+.+ ..|++|++++++.|. ++||.++|+++|++.++..++|+.   +++.+.+|+|+||+||+|||
T Consensus        81 ~~y~viEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt~eYe~~~~~~~~~e~~k~~ke~~~~~~K~iE~YLlanp  155 (159)
T d1fm4a_          81 YNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHS  155 (159)
T ss_dssp             EEEEEEEBTTBTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCTTTTHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEEEeccccccceEEEEEEEEEecCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence            99999999965 469999999999999 578999999999999998777764   45889999999999999998

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=100.00  E-value=1.1e-39  Score=236.84  Aligned_cols=145  Identities=32%  Similarity=0.558  Sum_probs=131.4

Q ss_pred             ceEEEEEEEcCCHHHHHHHH-hccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            6 GKLEVELEVKSSADKFWGSI-RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~-~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      .+++.|+++++||+++|+++ .|.++++|+++|+.|++|+ +||+| ++||||.|+|..|++. .++|||++++|+++++
T Consensus         3 ~t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sve-veGdG-~~GsIr~~~~~~~~~~-~~~Kerve~iD~~~~~   79 (153)
T d2bk0a1           3 QTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGDG-GPGTLKIITLPDGGPI-TTMTLRIDGVNKEALT   79 (153)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEE-EESSS-STTCEEEEECCTTSSC-CEEEEEEEEEETTTTE
T ss_pred             eEEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEE-EECCC-CCCeEEEEEEecCccc-eeeEEEEEEEecCccE
Confidence            47899999999999999997 6887678999999999999 58996 9999999999966653 5799999999999999


Q ss_pred             EEEEEEecCcc-cceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhHH---HHHHHHHHHHHHHHhhC
Q 031700           85 VTYKVIDGDLL-KYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVIK---DFALKNFQEVDDYILKA  153 (154)
Q Consensus        85 ~~Y~~ieg~~~-~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~~---~~~~~~~k~ie~~l~~~  153 (154)
                      ++|+++||+.+ ..|++|..++++.|. ++||.++|+++|++.++..++|+.++   +.+.+|+|+||+||+||
T Consensus        80 ~~y~viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t~eYe~~~~~~~~~e~~k~~~e~~~~~~K~iE~YLlan  153 (153)
T d2bk0a1          80 FDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN  153 (153)
T ss_dssp             EEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999964 579999999999999 57899999999999999999998765   66899999999999998

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=1.3e-39  Score=237.22  Aligned_cols=146  Identities=25%  Similarity=0.375  Sum_probs=132.1

Q ss_pred             ceEEEEEEEcCCHHHHHHHH-hccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            6 GKLEVELEVKSSADKFWGSI-RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~-~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      .+++.|+++++||+|+|+++ .|+++++|++ |+.|++|+++|||| ++||||.|+|..|.+. +++|||++++|+++++
T Consensus         3 ~t~~~E~~~~v~a~k~fka~~~d~~~l~pk~-p~~i~s~e~~eGdG-~~GsIr~~~~~~g~~~-~~~Kerie~vD~e~~~   79 (157)
T d1xdfa1           3 FTFEDESTSTIAPARLYKALVKDADAIIPKA-VEAIQSIETVEGNG-GPGTIKKLTLIEGGET-KYVLHKIEAVDEANLR   79 (157)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHHSHHHHHHHH-CTTEEEEEEEESSS-STTCEEEEEEEETTEE-EEEEEEEEEEEGGGTE
T ss_pred             eEEEEEEeccCCHHHHHHHHhhchhhccccc-hhheecceeecCCC-CCCcEEEEEEcCCCcc-EEEEEEEEEEechhcE
Confidence            47899999999999999987 6887667887 66999999999996 9999999999977664 6799999999999999


Q ss_pred             EEEEEEecCcc-cceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhH---HHHHHHHHHHHHHHHhhCC
Q 031700           85 VTYKVIDGDLL-KYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVI---KDFALKNFQEVDDYILKAN  154 (154)
Q Consensus        85 ~~Y~~ieg~~~-~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~---~~~~~~~~k~ie~~l~~~~  154 (154)
                      ++|+++||+.+ ..|++|..++++.|. ++||.++|+++|++.++..++|+.+   ++.+.+|+|+||+||+|||
T Consensus        80 ~~y~viEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t~eYe~~~~~~~~~e~ik~~~e~~~~~~K~iEaYLlanp  154 (157)
T d1xdfa1          80 YNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHP  154 (157)
T ss_dssp             EEEEEESSTTSCTTEEEEEEEEEEEECTTSSEEEEEEEEEEESSSSCCCHHHHHHHHHHHHTTTHHHHHHHHTSG
T ss_pred             EEEEEEecccccccEEEEEEEEEEEcCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999965 569999999999998 6789999999999999988888865   5778899999999999998

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=3.7e-39  Score=234.44  Aligned_cols=146  Identities=23%  Similarity=0.403  Sum_probs=131.6

Q ss_pred             ceEEEEEEEcCCHHHHHHHH-hccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            6 GKLEVELEVKSSADKFWGSI-RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~-~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      .+++.|+.+++||+++|+++ .|+++++|+++| .|++++++|||| ++||||.|+|.+|++. +++|||++++|++|++
T Consensus         3 ~t~~~E~~~~v~a~klfka~~~d~~~l~pk~~~-~i~s~e~~eGdG-g~GsIk~~~~~~~~~~-~~~Kerie~iD~en~~   79 (155)
T d1icxa_           3 FAFENEQSSTVAPAKLYKALTKDSDEIVPKVIE-PIQSVEIVEGNG-GPGTIKKIIAIHDGHT-SFVLHKLDAIDEANLT   79 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHST-TEEEEEEEESSS-STTCEEEEEEESSSSE-EEEEEEEEEEEGGGTE
T ss_pred             eEEEEeEEecCCHHHHhhhheeccchhchhhhh-heeeeeEecCCC-ccceEEEEEeccCCce-EEEEEEEEEEcccccE
Confidence            36889999999999999986 689877799998 599999999996 9999999999977764 6899999999999999


Q ss_pred             EEEEEEecCcc-cceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChh--hHHHHHHHHHHHHHHHHhhCC
Q 031700           85 VTYKVIDGDLL-KYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPS--VIKDFALKNFQEVDDYILKAN  154 (154)
Q Consensus        85 ~~Y~~ieg~~~-~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~--~~~~~~~~~~k~ie~~l~~~~  154 (154)
                      ++|+++||+.+ ..|++|..++++.|. ++||.++|+++|++.++..++++  .+++.+.+|+|+||+||+|||
T Consensus        80 ~~y~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t~eYe~~g~~~~e~~~~~~ke~~~~~fK~iE~YLlanP  153 (155)
T d1icxa_          80 YNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAHP  153 (155)
T ss_dssp             EEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSSCCHHHHTTHHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCChhhHHHHHHHHHHHHHHHHHHHhhCc
Confidence            99999999975 469999999999999 57899999999999988655443  478999999999999999998

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=100.00  E-value=7e-35  Score=210.30  Aligned_cols=139  Identities=22%  Similarity=0.328  Sum_probs=123.2

Q ss_pred             ceEEEEEEEcCCHHHHHHHH-hccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700            6 GKLEVELEVKSSADKFWGSI-RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~-~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~   84 (154)
                      .+++.|+++++||+++|+++ +|++ .||+|+|+.|++|++++|+| ++||||.|+|.+|.+. .++||||+.+|+++|+
T Consensus         3 ~~~~~E~~~~v~a~k~~ka~~~d~~-~l~~~~p~~i~s~e~~eGdg-~~GsIr~~~~~~g~~~-~~~kErl~~iD~~~~~   79 (147)
T d1txca1           3 FVFRDETSSSVAPAKLYKALTKDSD-TIAQKIDGPIQSIELVEGNG-GVGTIKKITANEGDKT-SFVLQKVDAIDEANLG   79 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHTTHH-HHHHHTTSSEEEEEEEESSS-STTCEEEEEEEETTEE-EEEEEEEEEEEGGGTE
T ss_pred             eEEEEEEeccCCHHHHHHhhhcccc-cCccccccccccceeecCCC-CcceEEEEEEcCCCcc-eEEEEEEEEEccCCcE
Confidence            47899999999999999755 7996 57888999999999999997 8999999999977654 5799999999999999


Q ss_pred             EEEEEEecCcc-cceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhH---HHHHHHHHHHHH
Q 031700           85 VTYKVIDGDLL-KYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVI---KDFALKNFQEVD  147 (154)
Q Consensus        85 ~~Y~~ieg~~~-~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~---~~~~~~~~k~ie  147 (154)
                      ++|+++||+.+ ..|++|..++++.|. ++||.++|+++|++.++..++++.+   ++.+.+|+|++|
T Consensus        80 ~~y~iiEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~~~y~~~~~~~~~ee~~k~~k~~~~~~~KavE  147 (147)
T d1txca1          80 YDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIE  147 (147)
T ss_dssp             EEEEEEESTTSCTTEEEEEEEEEEEECSTTCEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEccCccccceEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHhhhheecC
Confidence            99999999865 469999999999998 6789999999999998877777654   577889999997

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.5e-29  Score=175.99  Aligned_cols=116  Identities=34%  Similarity=0.587  Sum_probs=104.1

Q ss_pred             CCcceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCC
Q 031700            3 SAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         3 ~~~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~   82 (154)
                      |+.|+++.+++|++||+++|+++.+..                 +|++             +..    .|||++++|++|
T Consensus         2 ~l~gkl~~eveik~~a~kf~~~~~~~~-----------------~~~~-------------~~~----~KerVe~vD~en   47 (120)
T d1vjha_           2 TLKGALSVKFDVKCPADKFFSAFVEDT-----------------NRPF-------------EKN----GKTEIEAVDLVK   47 (120)
T ss_dssp             CSEEEEEEEEEESSCHHHHHHHHHHHT-----------------TSCS-------------STT----CEEEEEEEETTT
T ss_pred             CcceEEEEEEEecCCHHHHHHHhhhcc-----------------CCCC-------------Ccc----cEEEEEEEcCCC
Confidence            678999999999999999999996442                 2332             111    589999999999


Q ss_pred             cEEEEEEEecCcccceeEEEEEEEEeeC-C-CCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 031700           83 KVVTYKVIDGDLLKYYKAFKGIVSVNPK-G-EGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~~~~~~~~t~~v~~~-~-~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  152 (154)
                      ++++|+++||+++..|++|..|+++.|. + +||+++|+++|++.++..++|+.+++++..|+|+||+||++
T Consensus        48 ~sity~vieGdvl~~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~~~~p~p~~~~e~~~~~~K~id~yLL~  119 (120)
T d1vjha_          48 KTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIIDESVKYFKKLDEAILN  119 (120)
T ss_dssp             TEEEEEEECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEeeccccceeEEEEEEEEEecCCCCceEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999988889999999999998 3 48999999999999999999999999999999999999986

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.94  E-value=6.7e-26  Score=160.18  Aligned_cols=129  Identities=18%  Similarity=0.328  Sum_probs=108.3

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      +.+.+++|+|||++||++++||. .+|+|+| .+.+|+..+     .|++|.+++.+|..    +.|||+.+|+.+|+++
T Consensus         3 ~~~~si~I~A~pe~VW~~v~df~-~~~~W~p-~v~~~~~~~-----~G~~R~~~~~~g~~----~~E~l~~~d~~~~~~~   71 (138)
T d3cnwa1           3 HTTTSMEIFGSPEQVWQLIGGFN-SLPDWLP-YIPSSKLTE-----GGRVRHLANPDGDT----IIERLEVFNDKERYYT   71 (138)
T ss_dssp             EEEEEEEESSCHHHHHHHHCCTT-CGGGTCT-TCSEEEEEG-----GGTEEEEECTTCCE----EEEEEEEEETTTTEEE
T ss_pred             cEEEEEEEeCCHHHHHHHHhCcc-chHHHhc-ccceeEeec-----CceeEEEEecCCce----eEEEEEEEeCCCcEEE
Confidence            57899999999999999999996 6899999 799998653     28999999988865    7899999999999999


Q ss_pred             EEEEecCcccceeEEEEEEEEeeC-C-CCeEEEEEEEEEeCCCCCCChhhHH----HHHHHHHHHHHHHHh
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPK-G-EGSLVKWACEFEKASDDVPDPSVIK----DFALKNFQEVDDYIL  151 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~-~-~~s~v~Wt~~~e~~~~~~~~~~~~~----~~~~~~~k~ie~~l~  151 (154)
                      |++++|++  ++++|.+++++.|. + ++|+|+|+++|+|.+.   .++...    ..+..++++|+++++
T Consensus        72 y~~~~~~~--p~~~~~~~~~l~p~~~g~~t~v~w~~~f~p~~~---~~~~~~~~~~~~~~~~l~~L~~~f~  137 (138)
T d3cnwa1          72 YSIMNAPF--PVTNYLSTIQVKEGTESNTSLVEWSGTFTPVEV---SDEEAINLFHGIYSDGLKALQQAFL  137 (138)
T ss_dssp             EEEEECSS--SEEEEEEEEEEEECSSTTCEEEEEEEEEEESSS---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCC--cceeeEEEEEEEECCCCCeEEEEEEEEEecCCC---CHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999986  48999999999997 3 4699999999998653   344332    446677888877664

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=2.7e-16  Score=109.82  Aligned_cols=135  Identities=15%  Similarity=0.231  Sum_probs=102.1

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      +++.++.|++|+++||+++.|+. .+|+|+| .+++++++++++  .+....+++. .+...  ....+++ .++.++.+
T Consensus         2 ~v~~~~~I~ap~~~V~~~l~D~~-~~~~w~p-~~~~~~il~~~~--~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~i   74 (146)
T d2d4ra1           2 EVRAERYIPAPPERVYRLAKDLE-GLKPYLK-EVESLEVVAREG--ARTRSRWVAVAMGKKV--RWLEEEE-WDDENLRN   74 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHH-HHGGGCT-TEEEEEEEEEET--TEEEEEEEEEETTEEE--EEEEEEE-EETTTTEE
T ss_pred             EEEEEEEECCCHHHHHHHHHChh-hHHhhcc-ccEEEEEEEecC--CcceEEEEEEeeeeeE--EEEEEEE-EcCCCCEE
Confidence            78999999999999999999996 6999999 789999887653  2344444444 44333  2555644 67899999


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCC-hh-----hHHHHHHHHHHHHHHHHhh
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPD-PS-----VIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~-~~-----~~~~~~~~~~k~ie~~l~~  152 (154)
                      .|.+..|++    ..+.+++++.|.++||.++|+++|+...+.... ..     .+++.+..++.+|++.+.+
T Consensus        75 ~~~~~~g~~----~~~~g~w~l~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  143 (146)
T d2d4ra1          75 RFFSPEGDF----DRYEGTWVFLPEGEGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLA  143 (146)
T ss_dssp             EEEEEEESC----SEEEEEEEEEECSSSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEccCCc----ceEEEEEEEEecCCceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999874    568899999999889999999999976543211 12     3335577888888877765

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.66  E-value=4.3e-15  Score=104.27  Aligned_cols=137  Identities=15%  Similarity=0.242  Sum_probs=96.2

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcC-CCceeeeeeEEEEeeeCCCcE
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD-GSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~-G~~~~~~~kErl~~~D~~~~~   84 (154)
                      ++++.++.|+||+++||+++.|+. .+|+|+| .+.++++++.++++.+....+.... +...   ..+.....++..+.
T Consensus         3 ~~~e~si~I~Ap~~~Vw~~l~D~~-~~~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   77 (155)
T d2rera1           3 ARTDNSIVVNAPFELVWDVTNDIE-AWPELFS-EYAEAEILRQDGDGFDFRLKTRPDANGRVW---EWVSHRVPDKGSRT   77 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCGG-GHHHHCS-SEEEEEEEECCSSCEEEEEEECCCTTSCCC---EEEEEEEEEGGGTE
T ss_pred             CEEEEEEEECCCHHHHHHHHHChh-hHhhhhh-hceEEEEeecCCCceEEEEEEEEeeeeeeE---EEEEEEEEcCCccE
Confidence            578999999999999999999996 6999999 7889988776543444443343333 3222   23333457788888


Q ss_pred             EEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChh----hHHHHHHHHHHHHHHHH
Q 031700           85 VTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPS----VIKDFALKNFQEVDDYI  150 (154)
Q Consensus        85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~----~~~~~~~~~~k~ie~~l  150 (154)
                      +.|....++.   ...+.+++++.|.++||.++|+.+|+..+.......    .+...+...+.+|.+.+
T Consensus        78 ~~~~~~~~~~---~~~~~~~w~~~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~  144 (155)
T d2rera1          78 VRAHRVETGP---FAYMNLHWTYRAVAGGTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKII  144 (155)
T ss_dssp             EEEEESSCTT---EEEEEEEEEEEEETTEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeecCcc---ceeeEEEEEEeecCCccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888765544   578889999999988999999999998876533321    22233445555555444

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.65  E-value=9.7e-15  Score=100.69  Aligned_cols=130  Identities=11%  Similarity=0.071  Sum_probs=94.0

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT   86 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~   86 (154)
                      +++.++.|+||+|+||+++.|+. .+|+|+| .+.+++. +|+. ++|+..++++..|..    +..++++++ ++++++
T Consensus         2 ~~s~si~I~Ap~e~Vw~~~~d~~-~~~~W~~-~~~~~~~-~~~~-~~G~~~~~~~~~~~~----~~~~v~~~~-p~~~~~   72 (137)
T d2b79a1           2 KFSFELAVNTKKEDAWTYYSQVN-QWFVWEG-DLEQISL-EGEF-TTGQKGKMKMEDMPE----LAFTLVEVR-ENQCFS   72 (137)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCGG-GGGGTST-TEEEEEE-SSSS-STTCEEEEEETTSCC----EEEEECCCB-TTTEEE
T ss_pred             ceEEEEEEcCCHHHHHHHHhhhh-hCccccC-cccceee-cccc-cceEEEEEEEcCCcc----eeeeeeccc-CCcEEE
Confidence            68999999999999999999995 6999999 7889985 5654 789999999877665    567888885 667899


Q ss_pred             EEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChh---hHHHHHHHHHHHHHHHH
Q 031700           87 YKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPS---VIKDFALKNFQEVDDYI  150 (154)
Q Consensus        87 Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~---~~~~~~~~~~k~ie~~l  150 (154)
                      |....+.     ..+.+.+.+.+. +++|+++|+.+|...........   .+.+.+...+++|.+.+
T Consensus        73 ~~~~~~~-----~~~~~~~~~~~~~~g~t~vt~~~~~~g~~~~~~~~~~~~~v~~~~~~~l~~LK~~~  135 (137)
T d2b79a1          73 DLTATPF-----GNVLFEHEILENPDGTISLRHSVSLTDSDTTEEALAFLKQIFADVPESVGKLKQIL  135 (137)
T ss_dssp             EEEEETT-----EEEEEEEEEEECTTSCEEEEEEEEECSCSCCTTHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             EEecccc-----eeeeeEEEEccCCCCcEEEEEEEecccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8764332     355567778888 56799999999974333221111   12233455556655544

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.42  E-value=6.8e-13  Score=90.98  Aligned_cols=137  Identities=18%  Similarity=0.219  Sum_probs=84.0

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcC-CCceeeeeeEEEEeeeCCCcE
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD-GSPIVKVSTEKIENVDEANKV   84 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~-G~~~~~~~kErl~~~D~~~~~   84 (154)
                      -+++.+++|++|+++||+++.|+. .+|.|+| .+++++...+.   .+......... +....  ........++. ..
T Consensus         3 ~k~e~si~I~ap~e~Vw~~l~D~~-~~~~w~p-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~   74 (147)
T d2ns9a1           3 VRYEGSFEVSKTPEEVFEFLTDPK-RFSRAFP-GFKSVEVEDGS---FTIELRLSLGPLRGDAR--VRASFEDLEKP-SK   74 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCHH-HHGGGST-TEEEEEEETTE---EEEEEEEESSSSEEEEE--EEEEEEEEETT-TE
T ss_pred             EEEEEEEEEcCCHHHHHHHHhCHh-hhhhccc-chhheeecccc---cceeEEEEEEEEeeEee--eeeeeeeecCC-cc
Confidence            389999999999999999999996 6999999 68888754332   22222222221 11111  23344444443 33


Q ss_pred             EEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChh-hHH----HHHHHHHHHHHHHHh
Q 031700           85 VTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPS-VIK----DFALKNFQEVDDYIL  151 (154)
Q Consensus        85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~-~~~----~~~~~~~k~ie~~l~  151 (154)
                      ..+....... .....+..++.+.|.++||.++|+.+++.......-.. .+.    ..+..++++|.+.|-
T Consensus        75 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~  145 (147)
T d2ns9a1          75 ATVKGSGRGA-GSTLDFTLRFAVEPSGGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELG  145 (147)
T ss_dssp             EEEEEEEECS-SEEEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eeEEEeeecc-ccceeeEEEEEEEecCCCcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4433333322 12567888999999888999999999998754322121 122    334455555555543

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.20  E-value=1.3e-10  Score=80.46  Aligned_cols=99  Identities=14%  Similarity=0.135  Sum_probs=72.4

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      ....+++|++|+++||+.+.|+. .+|+|+| .+.+++..+|+       +.+... +++.    ++-+++. |.+++.|
T Consensus         6 ~~~~~i~I~~p~~~v~~~~~d~~-~~p~w~~-~l~~~~~~~~~-------~~~~~~~~~G~----~~~~i~~-~~p~~~i   71 (133)
T d2qpva1           6 SRIIHLSVEKPWAEVYDFAANPG-NMPRWAA-GLAGGLEADGE-------DWIAKGGPLGE----VRVNFAP-HNEFGVI   71 (133)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCGG-GGGGTCG-GGTTCCEEETT-------EEEEECSSSCE----EEEEECC-CCSSCBC
T ss_pred             EEEEEEEECCCHHHHHHHHhChh-hcchhhh-ccceeEEecCC-------cEEEEecCCCc----EEEEEEE-cCCCCEE
Confidence            56778999999999999999996 6999999 68887766542       234443 3333    4556664 6789999


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEe
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEK  124 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~  124 (154)
                      .|+..+|+..    .-..+|++.|.++||.+.|+. |.+
T Consensus        72 ~w~~~~~~~~----~g~v~fr~~~~g~gt~v~~~~-~~p  105 (133)
T d2qpva1          72 DHVVTLPDGL----KVYNALRVTPNGSGTEVSFTL-LRL  105 (133)
T ss_dssp             CEEEECTTSC----EEEEEEEEEEETTEEEEEEEE-ECC
T ss_pred             EEEEecCCCC----EEEEEEEEccCCCeEEEEEEE-EeC
Confidence            9999887641    233467888777778888876 443

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.15  E-value=2.3e-10  Score=79.98  Aligned_cols=112  Identities=14%  Similarity=0.161  Sum_probs=78.6

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc---CCCceeeeeeEEEEeeeCCCc
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA---DGSPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~---~G~~~~~~~kErl~~~D~~~~   83 (154)
                      +...+..|++||+++|+++.|+. ..|+|+| ..+++++++...++-+......+.   .|...  ....+ ...+..++
T Consensus         3 ~~~~~~vi~~~~e~vf~vV~Dve-~Yp~FlP-~c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~   77 (148)
T d1t17a_           3 RHVVTKVLPYTPDQLFELVGDVD-AYPKFVP-WITGMRTWNGRVDGAVSTVDAEAQVGFSFLRE--KFATR-VRRDKDAR   77 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHTTTT-CCSSCCS-SCCCCCEEEEEEETTEEEEEEEEECSTTSSCC--EEEEE-EEEETTTC
T ss_pred             cceEEEEeCCCHHHHHHHHHHHH-hhhhhcc-ccCccEEEecccccccceeeEEEEEEeeeeEE--EEEEE-eeecCCce
Confidence            45677799999999999999996 6999999 677877776432123333333333   22221  12233 33667888


Q ss_pred             EEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCC
Q 031700           84 VVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASD  127 (154)
Q Consensus        84 ~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~  127 (154)
                      .+.....+|+.    +.+.+.+++.|.+++|.|+|.++|+....
T Consensus        78 ~~~~~~~~g~f----~~l~~~W~f~~~~~~T~V~~~l~fe~~~~  117 (148)
T d1t17a_          78 SIDVSLLYGPF----KRLNNGWRFMPEGDATRVEFVIEFAFKSA  117 (148)
T ss_dssp             EEEEEESSTTS----SCEEEEEEEEEETTEEEEEEEEEECCSCH
T ss_pred             EEEEeccCchh----hhcccceeeccCCCceEEEEEEEEEECCH
Confidence            88777766553    67789999999978899999999986653

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=99.00  E-value=7.8e-09  Score=70.89  Aligned_cols=113  Identities=13%  Similarity=0.240  Sum_probs=71.3

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCC-ceeeeeeEEEEeeeCCCcEE
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS-PIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~-~~~~~~kErl~~~D~~~~~~   85 (154)
                      +.+.+++|++|+++||+++.|.. .+++++| .+++++.++.+. ..+.+ .+.+..-. .+.  .+.++...+...+ .
T Consensus         2 n~s~~~~i~~~~e~v~~~l~D~~-~~~~~~P-g~~~~~~~~~~~-~~~~~-~~~~g~~~~~~~--~~~~~~~~~~~~~-~   74 (147)
T d2pcsa1           2 NGNGSIELKGTVEEVWSKLMDPS-ILSKCIM-GCKSLELIGEDK-YKADL-QIGIAAVKGKYD--AIIEVTDIKPPYH-Y   74 (147)
T ss_dssp             EEEEEEEEESCHHHHHHHHTCHH-HHHHHST-TEEEEEEEETTE-EEEEE-EECCGGGCEEEE--EEEEEEEEETTTE-E
T ss_pred             CCCceEEeCCCHHHHHHHHcCHH-HHHhhCc-chhhceecCCCE-EEEEE-EEeecceeeeeE--EEEEEeccCcccc-e
Confidence            46789999999999999999996 7999999 578888775431 11222 22232211 111  3445555554443 3


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCC
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASD  127 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~  127 (154)
                      ......... .....+.+.+.+.+. +++|+|+|+++|+..+.
T Consensus        75 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~g~  116 (147)
T d2pcsa1          75 KLLVNGEGG-PGFVNAEGVIDLTPINDECTQLTYTYSAEVGGK  116 (147)
T ss_dssp             EEEEEEEET-TEEEEEEEEEEEEESSSSEEEEEEEEEEEEESG
T ss_pred             eEeeccccc-cchhcceeEEeeecccCCcEEEEEEEEEEECcH
Confidence            333322221 124455566666666 57899999999998654

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=99.00  E-value=3e-09  Score=75.00  Aligned_cols=140  Identities=8%  Similarity=0.056  Sum_probs=88.4

Q ss_pred             cceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCC
Q 031700            5 GGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         5 ~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~   82 (154)
                      ...+..+.+|+||+++||+++.|.. .+++|++..--++...+++. .+|....+.+.  +|....  +.-++..++ ++
T Consensus        11 ~~~i~i~r~i~Ap~e~Vw~a~tdpe-~l~~W~~p~~~~~~~~~~d~-~~gg~~~~~~~~~~g~~~~--~~g~v~~i~-~~   85 (163)
T d1xuva_          11 KQEIIITREFDAPRELVFKAFTDPD-LYTQWIGPRGFTTALKIFEP-KNGGSWQYIQKDPEGNEYA--FHGVNHDVT-EP   85 (163)
T ss_dssp             CSEEEEEEEESSCHHHHHHHHHCHH-HHTTTCSSTTCEEEEEEECC-STTCEEEEEEECTTSCEEE--EEEEEEEEE-TT
T ss_pred             CceEEEEEEeCCCHHHHHHHHcChH-HhhhccCCCCccceeeeeec-eeCceEEEEEEecCCCceE--EEEEEEEec-CC
Confidence            3468899999999999999999985 68898753333444455554 45555444443  666543  778899996 55


Q ss_pred             cEEEEEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCCCCChh----hHHHHHHHHHHHHHHHHhh
Q 031700           83 KVVTYKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDDVPDPS----VIKDFALKNFQEVDDYILK  152 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~~~~~~----~~~~~~~~~~k~ie~~l~~  152 (154)
                      ++|.|+.--++....-.....++++.+.+ ++|+++++..|.....   ...    ...+....++.+|++||.+
T Consensus        86 ~rl~~tw~~~~~~~~~~~~~v~~~~e~~~~g~t~~~~~~~~~~~~~---~~~~~~~g~~~GW~~~L~~L~~~le~  157 (163)
T d1xuva_          86 ERIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTIED---RDGMLQSGMEEGINDSYERLDELLEK  157 (163)
T ss_dssp             TEEEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEECSSHHH---HHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEeccCCCCCCCcEEEEEEEEEeCCCcEEEEEEEcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67888764332211123456788888884 4577777766532110   011    1123356788889988854

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.88  E-value=7.5e-08  Score=66.08  Aligned_cols=139  Identities=11%  Similarity=0.091  Sum_probs=89.5

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc---CCCceeeeeeEEEEeeeCCC
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA---DGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~---~G~~~~~~~kErl~~~D~~~   82 (154)
                      .++..+..|+||+++||+++.|.. .+.+|++..--.+...+++. .+|..-++.+.   +|....  +.=++.+++ +.
T Consensus         2 ~ti~~~r~i~ap~e~Vw~a~Tdp~-~~~~W~~p~~~~~~~~~~d~-~~Gg~~~~~~~~~~~g~~~~--~~g~v~~~~-p~   76 (143)
T d1z94a1           2 NTIRLHRVLSAPPERVYRAFLDPL-ALAKWLPPEGFVCKVLEHDA-RVGGAYKMEFLAFASGQKHA--FGGRYLELV-PG   76 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHHTTCHH-HHHHHSSCTTEEEEEEEECC-STTCEEEEEEEETTTCCEEE--EEEEEEEEE-TT
T ss_pred             cEEEEEEEECCCHHHHHHHhcCHH-HHhhhhCCCCccceeEeecc-ccceeEEEEEeeCCCCcEEE--EEEEEEEec-CC
Confidence            467888899999999999999985 78898653333444455654 56655444443   444432  566888896 66


Q ss_pred             cEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhC
Q 031700           83 KVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA  153 (154)
Q Consensus        83 ~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  153 (154)
                      ++|.|+....+.... .....++++.+.++||+++.+-+  ..++ .............++..|++||-++
T Consensus        77 ~~i~~t~~~~~~~~~-~~~~v~~~l~~~~~gT~lt~~~~--~~~~-~~~~~~~~~GW~~~l~~L~~~lE~~  143 (143)
T d1z94a1          77 ERIRYTDRFDDAGLP-GDMITTITLAPLSCGADLSIVQE--GIPD-AIPPENCYLGWQQSLKQLAALVEPD  143 (143)
T ss_dssp             TEEEEEEEESCCC----CEEEEEEEEEETTEEEEEEEEE--CCCT-TSCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             eEEEEEEeccCCCCC-CcEEEEEEEEEcCCCEEEEEEEE--cCCC-hhHHHHHHHHHHHHHHHHHHHHcCC
Confidence            678888654332111 23456888888888898876543  2222 2223445566778889999998653

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.81  E-value=3.5e-07  Score=64.15  Aligned_cols=139  Identities=14%  Similarity=0.028  Sum_probs=88.7

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCCc
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~~   83 (154)
                      ..++.+..|+||+++||+++.|.. .+.+|.+..--.+...+++. .+|..-++.+.  +|...  .+.-++.+++ +++
T Consensus         7 ~~i~ier~i~Ap~e~Vw~a~tdpe-~l~~W~~p~~~~~~~~~~d~-~~Gg~~~~~~~~~~g~~~--~~~g~v~e~~-p~~   81 (164)
T d2il5a1           7 VEVEIEKLYKFSPELVYEAWTKKD-LLKQWFMTSARTNKEIEADV-KEGGKYRIVDQQRNGKVN--VIEGIYESLV-MDE   81 (164)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHH-HHTTTSSSCTTTEEEEEECC-STTCEEEEEEECGGGCEE--EEEEEEEEEE-TTT
T ss_pred             EEEEEEEEECCCHHHHHHHHcCHH-HHhCcccCCCccceEEEeec-ccCceEEEEEecCCcceE--EEEEEEEEEc-CCC
Confidence            467888899999999999999985 68888642222333345554 56665555544  45443  3677888895 777


Q ss_pred             EEEEEEE-ecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChh-----------hHHHHHHHHHHHHHHHH
Q 031700           84 VVTYKVI-DGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPS-----------VIKDFALKNFQEVDDYI  150 (154)
Q Consensus        84 ~~~Y~~i-eg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~-----------~~~~~~~~~~k~ie~~l  150 (154)
                      +|.|+.- ++...   .....++.+.+. +++|+++++.+.-+.........           ....-...++.+|++||
T Consensus        82 ~i~~t~~~~~~~~---~~~~~~~~~~e~~~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l  158 (164)
T d2il5a1          82 YVKMTIGMPGLSE---TQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVI  158 (164)
T ss_dssp             EEEEEESCC--CC---CCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeccCCCC---CceEEEEEEEEcCCCCEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888752 22211   122345556555 68999999998887765432211           12244567888888888


Q ss_pred             hh
Q 031700          151 LK  152 (154)
Q Consensus       151 ~~  152 (154)
                      -+
T Consensus       159 E~  160 (164)
T d2il5a1         159 ET  160 (164)
T ss_dssp             HT
T ss_pred             hc
Confidence            54

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.79  E-value=2.2e-08  Score=70.66  Aligned_cols=142  Identities=12%  Similarity=0.173  Sum_probs=87.2

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCcccc-CcccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCC
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAF-SHDYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~-p~~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~   82 (154)
                      ..+..+..|+||+++||+++.|-. .+.+|+ |+.. .+...+++. .+|..-.+.+.  +|...  ...-++.+++ +.
T Consensus         5 ~~l~i~r~i~ap~e~Vw~a~tdpe-~~~~W~~p~~~-~~~~~~~d~-~~GG~~~~~~~~~~g~~~--~~~g~v~ei~-p~   78 (165)
T d1xfsa_           5 LDLMLKRELAVPVNLVWRGLTEPE-LLKKWFVPKPW-SISDCRVDL-RPGGEFYTVMQDPEGNKF--PNSGCFLEVT-DE   78 (165)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHCHH-HHTTTSSCTTC-EEEEEEECC-STTCEEEEEEECTTCCEE--EEEEEEEEEE-TT
T ss_pred             cEEEEEEEEcCCHHHHHHHHcCHH-HHhhcCCCCCc-cceeecccc-eeCceEEEEEECCCCcee--eEEEEEEEec-CC
Confidence            478899999999999999999885 688885 4333 334455665 55655555443  56543  2566888896 66


Q ss_pred             cEEEEEEE--e----------cCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCC-ChhhHHHHHHHHHHHHHHH
Q 031700           83 KVVTYKVI--D----------GDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVP-DPSVIKDFALKNFQEVDDY  149 (154)
Q Consensus        83 ~~~~Y~~i--e----------g~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~-~~~~~~~~~~~~~k~ie~~  149 (154)
                      ++|.|+..  +          ++..........++.+.+.++||+++.+..+....+... ......+.-..++..|++|
T Consensus        79 ~rl~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~gT~lt~~~~~~~~~~~~~~~~~g~~~GW~~~l~~L~~~  158 (165)
T d1xfsa_          79 KRLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSSGTRYTACAMHNTPGQRKLHEEMGFHEGWGTTITQLEEL  158 (165)
T ss_dssp             TEEEEESSEEGGGEECCC-----------CCEEEEEEEECSSSEEEEEEEECSSHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEeecccccccccccccccCCCCccEEEEEEEEEcCCcEEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77887631  1          111011223356888888888899998765432111000 0001223456888999999


Q ss_pred             HhhC
Q 031700          150 ILKA  153 (154)
Q Consensus       150 l~~~  153 (154)
                      |.+.
T Consensus       159 le~~  162 (165)
T d1xfsa_         159 LKQE  162 (165)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8764

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.60  E-value=6.8e-07  Score=60.99  Aligned_cols=137  Identities=9%  Similarity=0.057  Sum_probs=78.8

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEc--CCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCC
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLE--GDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEAN   82 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~e--G~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~   82 (154)
                      .+..+..|++|+++||+++.|.. .+.+|++..--.+...+  .+. .+|.--.+.+.  +|....  ++-++.+++ ++
T Consensus         2 el~i~r~i~a~~e~Vw~a~tdp~-~l~~W~~~~~~~~~~~~~~~~~-~~gg~~~~~~~~~~g~~~~--~~g~v~~~~-p~   76 (143)
T d3elia1           2 DLRLEREFAVAPEALFAWVSDGA-KLLQWWGPEGLHVPADQHDLDF-TRLGPWFSVMVNGEGQRYK--VSGQVTHVK-PP   76 (143)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCHH-HHHHHCSSTTCBCCTTSBCCCC-SSSEEEEEEEECTTCCEEE--EEEEEEEEE-TT
T ss_pred             eEEEEEEECCCHHHHHHHhcCHH-HHhhhcCCCCceeeeeeEEEee-ccCccEEEEEECCCCcEEE--EEEEEEEcC-CC
Confidence            46788899999999999999985 68888742211211111  121 33433333333  565432  667888896 45


Q ss_pred             cEEEEEE-EecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700           83 KVVTYKV-IDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        83 ~~~~Y~~-ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~  151 (154)
                      ++|.|+- .++.....-.....++.+.|.+++|+++.+-+  ...+ ........+.-..++..|++||.
T Consensus        77 ~rl~~t~~~~~~~~~~~~~~~vt~~l~~~~~gT~l~~~~~--~~~~-~~~~~~~~~GW~~~L~~L~~~lA  143 (143)
T d3elia1          77 QSVGFTWGWHDDDDRRGAESHVMFIVEPCAKGARLILDHR--ELGD-DEMSLRHEEGWTSSLRKLAAELA  143 (143)
T ss_dssp             TEEEEEEEEECTTSCEEEEEEEEEECCBC--CEEEEEEEE--SCSC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEeecCCCCCCCCcEEEEEEEEEcCCCEEEEEEEE--cCCC-HHHHHHHHHHHHHHHHHHHHHhC
Confidence            6676653 33322112233456788888878898876642  1111 11122334556788899999873

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=98.53  E-value=1.1e-06  Score=59.73  Aligned_cols=99  Identities=12%  Similarity=0.211  Sum_probs=68.0

Q ss_pred             CCCCcceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeC
Q 031700            1 MASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE   80 (154)
Q Consensus         1 m~~~~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~   80 (154)
                      |..+ ..+..++.|+||+++||+++.+.. .+.+|++..       +.+. ++|..-.+...++ .    +.=++.+++ 
T Consensus         1 mt~~-p~i~~~~~i~ap~e~Vw~alt~p~-~~~~W~~~~-------~~~~-~~g~~~~~~~~~~-~----~~g~v~~~~-   64 (138)
T d1xn5a_           1 MTRL-PDIKKEVRFNAPIEKVWEAVSTSE-GLAFWFMEN-------DLKA-ETGHHFHLQSPFG-P----SPCQVTDVE-   64 (138)
T ss_dssp             CCSC-CCEEEEEEESSCHHHHHHHTTSHH-HHHTTSCCB-------CCCS-CTTCEEEEECSSC-E----EEEEEEEEE-
T ss_pred             CCCC-CeEEEEEEECCCHHHHHHHHcCHH-HhceEccCC-------cccc-cceeeEEecCCcc-c----eeEEEEEEe-
Confidence            5543 479999999999999999999985 789999732       1111 3454433332222 2    345778886 


Q ss_pred             CCcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEE
Q 031700           81 ANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEF  122 (154)
Q Consensus        81 ~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~  122 (154)
                      .+++|.|+.-.+       ....++++.|.+++|+++++-+-
T Consensus        65 ~~~~l~~~~~~~-------~~~v~~~l~~~~~gT~lt~~~~g   99 (138)
T d1xn5a_          65 RPIKLSFTWDTD-------GWSVTFHLKEEENGTIFTIVHSG   99 (138)
T ss_dssp             TTTEEEEEETTT-------TEEEEEEEEECSSSEEEEEEEEC
T ss_pred             CCcEEEEEecCC-------CeEEEEEEEEcCCcEEEEEEEec
Confidence            677899986322       23468889999889998887543

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.22  E-value=1.5e-05  Score=56.08  Aligned_cols=123  Identities=7%  Similarity=0.022  Sum_probs=78.0

Q ss_pred             CcceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCc
Q 031700            4 AGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANK   83 (154)
Q Consensus         4 ~~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~   83 (154)
                      ++.++..+..|++|+++||+++.+.. .+.+|+|. ...     ++. .+|.--++.+.++.     ..-++.+++ +++
T Consensus        10 ~~~~f~~er~i~ap~e~Vw~AlTdpe-~l~~W~~~-~~~-----~d~-~~GG~~~~~~~~~~-----~~~~v~~~e-pp~   75 (160)
T d2nn5a1          10 QTIYFGTERAISASPQTIWRYLTETD-KLKQWFPE-LEI-----GEL-GVNGFWRFILPDFE-----ETMPFTDYA-EEK   75 (160)
T ss_dssp             TEEEEEEEEEESSCHHHHHHHHHCHH-HHHHHCTT-EEE-----EEC-STTCEEEEEETTEE-----EEEEEEEEE-TTT
T ss_pred             CcEEEEEEEEecCCHHHHHHHHcCHH-HHHhhCCC-CCc-----ccc-cCCCeeEEEcCCCC-----cceEEEEEe-cCC
Confidence            35578899999999999999999996 79999983 322     222 33444456665543     244677885 888


Q ss_pred             EEEEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700           84 VVTYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL  151 (154)
Q Consensus        84 ~~~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~  151 (154)
                      ++.|+-  +.-       ..++++.|. +++|+++-+=..-...  ..........=..++..|.+||-
T Consensus        76 rL~~tW--~~~-------~v~~eL~~~~~~~t~l~l~~~~~~~~--~~~~~~~~~GW~~~Ld~L~~~le  133 (160)
T d2nn5a1          76 YLGVTW--DTG-------IIYFDLKEQAPHQTLLVFSESLPENF--TTPRHKDIAGWSIVLNRLKQVVE  133 (160)
T ss_dssp             EEEEEE--TTE-------EEEEEEEEEETTEEEEEEEEEECTTC--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEe--cCc-------eEEEEEecCCCCeEEEEEEEecCccc--cchhhhhHHHHHHHHHHHHHHHc
Confidence            899985  211       257888887 5677776665542211  11111222234567777777764

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=97.91  E-value=3.3e-05  Score=52.78  Aligned_cols=94  Identities=9%  Similarity=0.079  Sum_probs=62.5

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEE
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      ..+..++.|+||+++||+++.|.. .+.+|++..  .     .+. .+|..-.+...+|..     .-++.+++ ++++|
T Consensus         8 ~~i~~~~~i~ap~e~Vw~alTdp~-~l~~W~~~~--~-----~~~-~~G~~~~~~~~~g~~-----~g~v~~~~-p~~~l   72 (143)
T d1xn6a_           8 NDIKQTIVFNASIQKVWSVVSTAE-GIASWFMPN--D-----FVL-EVGHEFHVQSPFGPS-----PCKVLEID-EPNHL   72 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHTTSCSH-HHHTTSCCB--C-----CCC-CTTCEECBCCTTCCC-----CEEEEEEE-TTTEE
T ss_pred             CeEEEEEEECCCHHHHHHHhcChH-HhceEeecc--C-----ccc-ccCceEEEeccccce-----eEEEEEEe-CCcEE
Confidence            469999999999999999999985 789998731  1     221 344432333334432     34677785 67888


Q ss_pred             EEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEE
Q 031700           86 TYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACE  121 (154)
Q Consensus        86 ~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~  121 (154)
                      .|+.-.+       ....++.+.+. +++|+++.+-+
T Consensus        73 ~~tw~~~-------~~~v~~~l~~~~~G~T~l~l~h~  102 (143)
T d1xn6a_          73 SFSWDTD-------GWVVSFDLKDLGDNKTEFTLIHG  102 (143)
T ss_dssp             EEEETTT-------TEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEcCC-------CcEEEEEEEEcCCCcEEEEEEEe
Confidence            9886221       23467888887 45688876543

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=97.80  E-value=5.5e-05  Score=53.69  Aligned_cols=125  Identities=12%  Similarity=0.143  Sum_probs=77.6

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc--CC-------------Cceeeee
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA--DG-------------SPIVKVS   71 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G-------------~~~~~~~   71 (154)
                      .+..+..|++|+++||+++.|-. .+.+|+...       +.+- .+|..-.+.+.  ++             ...  .+
T Consensus        20 ~l~~er~~~Ap~e~VW~AlTdpe-~l~~W~~p~-------~~d~-~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   88 (183)
T d2k5ga1          20 SIRFERLLPGPIERVWAWLADAD-KRARWLAGG-------ELPR-QPGQTFELHFNHAALTAETAPARYAQYDRPI--VA   88 (183)
T ss_dssp             SEEEEEEESSSSHHHHHHHHCHH-HHTTTSCCC-------CCCS-STTCEEEEEECGGGSCCSSCCSSCSGGGSCE--EE
T ss_pred             eEEEEEEeCCCHHHHHHHHhChH-HHhhhcCCC-------Cccc-cCCCEEEEEecCCCCcccccccccccCCCce--eE
Confidence            58899999999999999999985 688997521       1221 33443344333  11             111  14


Q ss_pred             eEEEEeeeCCCcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHH---HHHHHHHHHHH
Q 031700           72 TEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKD---FALKNFQEVDD  148 (154)
Q Consensus        72 kErl~~~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~---~~~~~~k~ie~  148 (154)
                      .-++.+++ ..++|.|+...++.. ...  ..++.+.+.+++|+++-+-+-      .++.+....   .-..++.+|.+
T Consensus        89 ~g~v~~~~-p~~rl~~tw~~~~~~-~~s--~v~~~l~~~g~gT~ltl~~~~------~~~~~~~~~~~~GW~~~L~~L~~  158 (183)
T d2k5ga1          89 RHTLLRCE-PPRVLALTWGGGAGE-APS--EVLFELSEAGEQVRLVLTHTR------LADRAAMLDVAGGWHAHLAVLAG  158 (183)
T ss_dssp             EEEEEEEE-TTTEEEEECCCCSSS-SCC--EEEEEEEECSSSEEEEEEEEC------CCSHHHHHHHTTTTTTHHHHHHH
T ss_pred             EEEEEEEe-CCeEEEEEeccCCCC-CcE--EEEEEEEEcCCcEEEEEEEec------CCChhhHHHHhhhHHHHHHHHHH
Confidence            56788896 677889987655432 122  357888888888988655431      122232222   23467788888


Q ss_pred             HHhh
Q 031700          149 YILK  152 (154)
Q Consensus       149 ~l~~  152 (154)
                      ||-.
T Consensus       159 ~leg  162 (183)
T d2k5ga1         159 KLAG  162 (183)
T ss_dssp             HHHT
T ss_pred             HHCC
Confidence            8754

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=2.3e-05  Score=53.15  Aligned_cols=122  Identities=9%  Similarity=0.033  Sum_probs=72.9

Q ss_pred             ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEE
Q 031700            6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVV   85 (154)
Q Consensus         6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~   85 (154)
                      -++..+..++||+++||+++.|-. .+.+|+....      +.+. .+|..  +.+.+|..     .-++.+++ ++++|
T Consensus         4 ~~i~~~r~~~ap~e~Vw~a~tdpe-~l~~W~~~~~------~~d~-~~Gg~--f~~~~g~~-----~G~~~ev~-p~~rl   67 (132)
T d1x53a1           4 CKITLKETFLTSPEELYRVFTTQE-LVQAFTHAPA------TLEA-DRGGK--FHMVDGNV-----SGEFTDLV-PEKHI   67 (132)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHH-HHHHHSCSCC------BCCC-STTCC--CBBTTTTE-----ECCEEEEE-TTTEE
T ss_pred             eEEEEEEEECCCHHHHHHHHcCHH-HHHhhhCCcc------cccc-ccCCE--EEEEecce-----eEEEEEEe-CCCEE
Confidence            478899999999999999999885 6889984222      2332 23322  22334432     23556675 55566


Q ss_pred             EEEE--EecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHH-HHHHHHHHHH
Q 031700           86 TYKV--IDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFAL-KNFQEVDDYI  150 (154)
Q Consensus        86 ~Y~~--ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~-~~~k~ie~~l  150 (154)
                      .|+-  -+.+. ..+  -..++.+.+.+++|+++.+-+.-|...    .+...+--. .++..|.+|+
T Consensus        68 v~tw~~~~~~~-~~~--s~vt~~l~~~~~~T~l~l~~~g~p~~~----~e~~~~GW~~~~~~~lk~~f  128 (132)
T d1x53a1          68 VMKWRFKSWPE-GHF--ATITLTFIDKNGETELCMEGRGIPAPE----EERTRQGWQRYYFEGIKQTF  128 (132)
T ss_dssp             EEEEEETTSCT-TCC--EEEEEECCBCSSCEEEEEEEEEEEHHH----HHHHHHTTHHHHHHHHHHHT
T ss_pred             EEEEecCCCCC-CCc--EEEEEEEEECCCcEEEEEEEECCCcch----HHHHHhhHHHHHHHHHHHHc
Confidence            6653  22221 122  235788888888899998887654321    222322222 3577777664

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=97.59  E-value=2.2e-05  Score=54.03  Aligned_cols=133  Identities=11%  Similarity=0.039  Sum_probs=73.8

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcc-----cceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCC
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHD-----YKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEA   81 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~-----v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~   81 (154)
                      .+..++.|+||+++||+++.+   .+++|.|..     +.++.+..+.+   |.. .+...+|...   +.=++.+++ +
T Consensus         5 ~v~~~~~i~Ap~e~Vf~a~te---~~~~Ww~~~~~~~~~~~~~~~~~~g---G~~-~~~~~dG~~~---~~g~v~ei~-p   73 (155)
T d1zxfa1           5 FVRHSVTVKADRKTAFKTFLE---GFPEWWPNNFRTTKVGAPLGVDKKG---GRW-YEIDEQGEEH---TFGLIRKVD-E   73 (155)
T ss_dssp             CEEEEEEESSHHHHHHHHHTT---CSSSSSSGGGSTTTTCSSCEEETTT---TEE-ECCCTTTSCC---CCEEEEEEE-T
T ss_pred             eEEEEEEEeCCHHHHHHHHHh---hhHhhcCCCCCCceEEEEEEeeCCC---ceE-EEEcccccee---eeEEEEEEe-c
Confidence            588999999999999999985   267886533     22332222322   333 3334466542   345778885 6


Q ss_pred             CcEEEEEEEecCcc--cceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCC-hhhHHH----HHHHHHHHHHHHHhh
Q 031700           82 NKVVTYKVIDGDLL--KYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPD-PSVIKD----FALKNFQEVDDYILK  152 (154)
Q Consensus        82 ~~~~~Y~~ieg~~~--~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~-~~~~~~----~~~~~~k~ie~~l~~  152 (154)
                      .++|.|+---++..  ..-.....++.+.+. +++|+|+.+-  ..-...... .....+    --..+|..|.+||-+
T Consensus        74 ~~rl~~tw~~~~~~~~~~~~~s~v~~~~~~~~~~~T~ltl~h--~g~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~  150 (155)
T d1zxfa1          74 PDTLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEH--THFDRMGTKHAKRVRNGMDKGWPTILQSFQDKIDE  150 (155)
T ss_dssp             TTEEEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEE--CSSTTSCHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEecCCccccccccceEEEEEEEecCCCCEEEEEEE--eccCcccchhHHHHHhhhhhhHHHHHHHHHHHhhh
Confidence            77888874332211  111123467777777 4678776653  211111000 112221    235778888888754

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.029  Score=39.06  Aligned_cols=140  Identities=10%  Similarity=-0.091  Sum_probs=81.0

Q ss_pred             eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc--CCC--ceeeeeeEEEEeeeCCC
Q 031700            7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA--DGS--PIVKVSTEKIENVDEAN   82 (154)
Q Consensus         7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G~--~~~~~~kErl~~~D~~~   82 (154)
                      .+..+..|++|++++++++.|.. ..++|.| .+.+++++|-.+ .-..+-+..+.  .+.  ....++--+...-++..
T Consensus        45 ~~r~~~~i~~~~~~v~~~l~d~~-~~~~Wd~-~~~~~~~le~~~-~~~~i~~~~~~~~~~~~v~~RD~v~~~~~~~~~~~  121 (199)
T d1jssa_          45 LYKAQGVMDDVVNNVIDHIRPGP-WRLDWDR-LMTSLDVLEHFE-ENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG  121 (199)
T ss_dssp             EEEEEEEESSCHHHHHHHHSSST-THHHHCS-SEEEEEEEEECS-TTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE
T ss_pred             EEEEEEEeCCCHHHHHHHHhChh-hhhhccc-chheEEEEEEcC-CCcEEEEEEEcccCCCCcCCcEEEEEEEEEEcCCc
Confidence            47889999999999999999995 6899999 789999998532 22344333332  221  11011212222223333


Q ss_pred             cEEEEEEEecCcc-cc---eeEEEEEEEEeeCC---CCeEEEEEEEEEeCCCCCCCh--h-hHHHHHHHHHHHHHHHH
Q 031700           83 KVVTYKVIDGDLL-KY---YKAFKGIVSVNPKG---EGSLVKWACEFEKASDDVPDP--S-VIKDFALKNFQEVDDYI  150 (154)
Q Consensus        83 ~~~~Y~~ieg~~~-~~---~~~~~~t~~v~~~~---~~s~v~Wt~~~e~~~~~~~~~--~-~~~~~~~~~~k~ie~~l  150 (154)
                      ..+.....+..+. +.   ...+.+-+.+.|.+   ++|.++|.+..+|.+. .|.-  . .+.......++.|.+.|
T Consensus       122 ~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~Lr~~l  198 (199)
T d1jssa_         122 LLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IPQSAVDTAMASTLANFYSDLRKGL  198 (199)
T ss_dssp             EEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCCCC-CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3332222222221 11   34455777788873   2699999999998864 3321  1 12244456667766655

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.82  E-value=0.035  Score=37.98  Aligned_cols=104  Identities=10%  Similarity=0.086  Sum_probs=63.6

Q ss_pred             eEEEEEEEcCC---------HHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEe
Q 031700            7 KLEVELEVKSS---------ADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIEN   77 (154)
Q Consensus         7 ~~~~~~~i~a~---------~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~   77 (154)
                      ++++-+.||-|         .+++|+-+-.-...-..+.| .+.+|++++.+  +-+-.|.++|+++ .    ++|++..
T Consensus         2 ~feHlv~IN~p~~p~~p~LTr~QlW~GL~lrar~p~~Fv~-~l~~c~v~~~~--~~~~~Rel~fg~~-~----v~e~Vtl   73 (151)
T d2ffsa1           2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRAREPQYFVV-GLERFEILVDD--GDRLHRRLYLPGL-V----VEDEVVL   73 (151)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHHHHHHCGGGTCT-TCCEEEEEEEC--SSEEEEEEEETTE-E----EEEEEEE
T ss_pred             cceEEEecCCCCCCCCCccCHHHHHHHHHHhhcCHhhccc-ccceEEEEEec--CCeEEEEEEECCc-e----eEEEEEE
Confidence            46677777765         35899998433233456777 79999999754  3478999999654 2    7899774


Q ss_pred             eeCCCcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEe
Q 031700           78 VDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEK  124 (154)
Q Consensus        78 ~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~  124 (154)
                      .  ...++.|.+...... .-.+...+|. .| +.| .+-.++.|+.
T Consensus        74 ~--~~~~v~f~~~a~~~~-~g~~l~~~Ie-ep-~~g-~L~lrf~Ye~  114 (151)
T d2ffsa1          74 K--APDSAHYSIKPSAEV-AGGSLDMTIE-EP-EPG-SLFVRFAYCT  114 (151)
T ss_dssp             E--TTTEEEEEECCCSSS-BEEEEEEEEE-EE-ETT-EEEEEEEEEE
T ss_pred             c--CCcEEEEEcccccCC-CCcEEEEEEc-cC-CCC-eEEEEEEEEc
Confidence            3  666778877653211 1234333443 22 233 3445556653

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.22  Score=34.62  Aligned_cols=139  Identities=8%  Similarity=-0.033  Sum_probs=81.6

Q ss_pred             EEEEEEEcCCHHHHHH-HHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc---CCC-ceeeeeeEEEEeeeCCC
Q 031700            8 LEVELEVKSSADKFWG-SIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA---DGS-PIVKVSTEKIENVDEAN   82 (154)
Q Consensus         8 ~~~~~~i~a~~~~vW~-~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~---~G~-~~~~~~kErl~~~D~~~   82 (154)
                      +..+..+++|++++++ ++.|.. ..++|.| .+.++++++--+ .-..+-...+.   .+. ....++--|-...++..
T Consensus        54 ~k~~~~i~~~~~~v~~~~~~d~e-~~~~Wd~-~~~~~~ile~~~-~~~~i~~~~~~~~~~~~vs~RD~v~~~~~~~~~~~  130 (214)
T d1em2a_          54 FILKTFLPCPAELVYQEVILQPE-RMVLWNK-TVTACQILQRVE-DNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDR  130 (214)
T ss_dssp             EEEEEEESSCHHHHHHHTTTCHH-HHTTTCT-TEEEEEEEEEET-TTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSE
T ss_pred             EEEEEEEeCCHHHHHHHHHhChH-HHHHHHH-HHhheEEEEEcC-CCceEEEEEecccCCCCCCCcEEEEEEEEEEcCCc
Confidence            6788899999999986 567875 5799999 788998887421 11223333232   111 11122333433344455


Q ss_pred             cEEEEEEEecCcc---cc---eeEEEEEEEEeeC--C-CCeEEEEEEEEEeCCCCCCChhhHH-----HHHHHHHHHHHH
Q 031700           83 KVVTYKVIDGDLL---KY---YKAFKGIVSVNPK--G-EGSLVKWACEFEKASDDVPDPSVIK-----DFALKNFQEVDD  148 (154)
Q Consensus        83 ~~~~Y~~ieg~~~---~~---~~~~~~t~~v~~~--~-~~s~v~Wt~~~e~~~~~~~~~~~~~-----~~~~~~~k~ie~  148 (154)
                      ..+....++-+..   ..   ...+.+-+.+.|.  + ++|.++|.+..+|.+. .  |..+.     .....+++.|.+
T Consensus       131 ~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~-i--P~~lvn~~~~~~~~~~~~~Lrk  207 (214)
T d1em2a_         131 YLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-L--PRYLIHQSLAATMFEFAFHLRQ  207 (214)
T ss_dssp             EEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-S--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCCCC-C--CHHHHHHHHHHhHHHHHHHHHH
Confidence            4444444433221   11   2444566667775  2 5799999999998875 2  33322     334566777777


Q ss_pred             HHhh
Q 031700          149 YILK  152 (154)
Q Consensus       149 ~l~~  152 (154)
                      ++.+
T Consensus       208 ~~~k  211 (214)
T d1em2a_         208 RISE  211 (214)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.56  Score=32.07  Aligned_cols=137  Identities=15%  Similarity=0.064  Sum_probs=76.4

Q ss_pred             eEEEEEEEc-CCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCcee--eeeeE-EEEeeeCCC
Q 031700            7 KLEVELEVK-SSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIV--KVSTE-KIENVDEAN   82 (154)
Q Consensus         7 ~~~~~~~i~-a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~--~~~kE-rl~~~D~~~   82 (154)
                      .+..+..|. +|++.++.++.|.. ..++|.| .+.++.....++   -.+-.+.+....+..  .++-. +....+++.
T Consensus        46 ~~k~~~~i~~~~~~~~~~~l~d~~-~~~~Wd~-~~~~~~~~~~~~---~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~~  120 (203)
T d1ln1a_          46 EYKVFGVLEDCSPTLLADIYMDSD-YRKQWDQ-YVKELYEQECNG---ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEG  120 (203)
T ss_dssp             EEEEEEEETTSCHHHHHHHHHCHH-HHHHHCT-TEEEEEEEEETT---EEEEEEEECCCTTSCCEEEEEEEEEEEECSTT
T ss_pred             EEEEEEEEcCCCHHHHHHHHcCHh-Hhhhhcc-cceEEEEEccCC---cEEEEEEcccccccCCceEEEEEEEEEccCCC
Confidence            467788885 89999999999986 6799999 566664333221   134444444221110  11211 222233333


Q ss_pred             cEEEEEEE---ecC-cc--c---ceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCCCCChhhH-----HHHHHHHHHHHH
Q 031700           83 KVVTYKVI---DGD-LL--K---YYKAFKGIVSVNPKG-EGSLVKWACEFEKASDDVPDPSVI-----KDFALKNFQEVD  147 (154)
Q Consensus        83 ~~~~Y~~i---eg~-~~--~---~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~~~~~~~~-----~~~~~~~~k~ie  147 (154)
                      ..+...+.   +-+ ..  .   ....+.+.+.+.|.+ ++|.+++....+|.+. .  |..+     +.....+++.|.
T Consensus       121 ~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~~~~Dp~G~-i--P~~lvn~~~~~~~~~~~~~l~  197 (203)
T d1ln1a_         121 RKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ-I--PSWLINWAAKNGVPNFLKDMA  197 (203)
T ss_dssp             CCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC-C--CHHHHHHHHHTHHHHHHHHHH
T ss_pred             CeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEEEEEcCCCCc-C--HHHHHHHHHHHHHHHHHHHHH
Confidence            32222221   111 11  1   245667788899984 7899999998888754 3  3332     233445666666


Q ss_pred             HHHh
Q 031700          148 DYIL  151 (154)
Q Consensus       148 ~~l~  151 (154)
                      +..+
T Consensus       198 k~~~  201 (203)
T d1ln1a_         198 RACQ  201 (203)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5543