Citrus Sinensis ID: 031710

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRRADDPQVSQIARASSFEVRYTTAFSDENTQACAIM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHccccEEEEEEEEcccEEEEEEEccHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccccccccEEEEEEEEEEcccHHHHHHHHHHHHccccEEEEEcccccEEEEEEEccHHHHHHHHHHHccccEEEccccccccccccccccccccccccccEEcccccccccccccccccHHHHcccccccccccEcc
Coil and Loop (DISEMBL)
mgvvdhfsdyfdcshgssklkkrrQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAhrtgkkaeiwpyvpydvvahpyapgvydrkapagyvrraddpqvsqIARASSFEVRyttafsdentQACAIM
Flexible Loop (DISEMBL)
mgvvdhfsdyfdcshgssklkkrrqlqtvevkvridcegcerkvkravegmkgvkqvdverkankvtvvgyvepskvvsriahrtgkkaeiwpyvpYDVVAHPYAPGVYDRKAPAGYVRRADDPQVSQIArassfevryttafsdentqacaim
Low Complexity Region (SEG)
MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRRADDPQVSQIARASSFEVRYTTAFSDENTQACAIM
Disordered region (IsUnstruct)
******FSDYFDC***********QLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR**************FEVRYT**************
Disordered Region (DISOPRED)
*GVVDHFS********************VEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPY***********************ADDPQVSQIARASSFEVRYTTAFSDENTQACAIM
Disordered Region (DISEMBL)
MGVVDHFSDYFDC**************TVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRRADDPQVSQIARASSFEVRYTTAFSDENTQACAIM
Disordered Region (DISPRO)
*GVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRRADDPQVSQIAR**SFEVRYTTAFSDENTQACAIM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRRADDPQVSQIARASSFEVRYTTAFSDENTQACAIM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
Q9SZN7	153	Heavy metal-associated is	yes	no	0.993	1.0	0.759	3e-66
Q6BK66	250	Superoxide dismutase 1 co	yes	no	0.376	0.232	0.355	0.0008

>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1

 Score =  250 bits (638), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 117/154 (75%), Positives = 138/154 (89%), Gaps = 1/154 (0%)

Query: 1   MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVE 60
           MGV+DH S+ FDCSHG  K+KKR+QLQTVE+KV++DCEGCERKV+R+VEGMKGV  V +E
Sbjct: 1   MGVLDHVSEMFDCSHGH-KIKKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLE 59

Query: 61  RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
            KA+KVTVVGYV+P+KVV+R++HRTGKK E+WPYVPYDVVAHPYA GVYD+KAP+GYVRR
Sbjct: 60  PKAHKVTVVGYVDPNKVVARMSHRTGKKVELWPYVPYDVVAHPYAAGVYDKKAPSGYVRR 119

Query: 121 ADDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
            DDP VSQ+ARASS EVRYTTAFSDEN  AC +M
Sbjct: 120 VDDPGVSQLARASSTEVRYTTAFSDENPAACVVM 153

Heavy-metal-binding protein. Binds lead, cadmium and copper. May be involved in heavy-metal transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6BK66|CCS1_DEBHA Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CCS1 PE=3 SV=2

 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 33 VRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEI 91
          V ++C+ C   V  +++ + G+ + D++ K+N VT  G V PS++V  I   TGK A I
Sbjct: 11 VPMECQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAI-QSTGKDAII 68

Copper chaperone for superoxide dismutase 1 (SOD1). Binds copper ions and delivers them specifically to SOD1.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
224080626	154	predicted protein [Populus trichocarpa]	1.0	1.0	0.876	3e-75
255587860	154	metal ion binding protein, putative [Ric	1.0	1.0	0.857	1e-74
224103187	154	predicted protein [Populus trichocarpa]	1.0	1.0	0.857	7e-73
449454207	154	PREDICTED: heavy metal-associated isopre	1.0	1.0	0.837	5e-72
356507799	163	PREDICTED: uncharacterized protein LOC10	1.0	0.944	0.811	4e-69
224103191	154	predicted protein [Populus trichocarpa]	1.0	1.0	0.785	2e-67
225428033	155	PREDICTED: uncharacterized protein LOC10	1.0	0.993	0.793	6e-67
388491530	156	unknown [Lotus japonicus]	1.0	0.987	0.775	1e-65
356538447	156	PREDICTED: uncharacterized protein LOC54	1.0	0.987	0.762	3e-65
297797850	153	hypothetical protein ARALYDRAFT_490624 [	0.993	1.0	0.766	3e-65

>gi|224080626|ref|XP_002306185.1| predicted protein [Populus trichocarpa] gi|222849149|gb|EEE86696.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (731), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 135/154 (87%), Positives = 146/154 (94%)

Query: 1   MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVE 60
           MG +DH S +FDCS GSSKLKKRRQLQTVEVKVRIDCEGCERKVKRA+EGMKGVKQVDVE
Sbjct: 1   MGALDHLSGFFDCSSGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRALEGMKGVKQVDVE 60

Query: 61  RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
           RKANKVTVVGYV+PSKVV+R+AHRTGKKAE+WPYVPYD+VAHPYAPGVYD+KAPAGYVR 
Sbjct: 61  RKANKVTVVGYVDPSKVVARVAHRTGKKAELWPYVPYDMVAHPYAPGVYDKKAPAGYVRN 120

Query: 121 ADDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
           A+DPQVSQ+ARASS EVRYTTAFSDEN  ACAIM
Sbjct: 121 AEDPQVSQLARASSTEVRYTTAFSDENPAACAIM 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587860|ref|XP_002534419.1| metal ion binding protein, putative [Ricinus communis] gi|223525324|gb|EEF27963.1| metal ion binding protein, putative [Ricinus communis]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 132/154 (85%), Positives = 148/154 (96%)

Query: 1   MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVE 60
           MG +DHFS  FDCSHGSSK KKR+QLQTVE+KVRIDCEGCERKVKRAVEGMKGVKQVDV+
Sbjct: 1   MGALDHFSHLFDCSHGSSKHKKRKQLQTVEIKVRIDCEGCERKVKRAVEGMKGVKQVDVD 60

Query: 61  RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
           RK+NK+TVVGYV+PSKVV+R+AHRTGK+AE+WPYVPYDVVAHPYAPGVYD+KAP+GYVRR
Sbjct: 61  RKSNKLTVVGYVDPSKVVARVAHRTGKRAELWPYVPYDVVAHPYAPGVYDKKAPSGYVRR 120

Query: 121 ADDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
           A+DPQVSQ+ARASS EVRYTTAFSDEN QAC+IM
Sbjct: 121 AEDPQVSQLARASSTEVRYTTAFSDENPQACSIM 154

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103187|ref|XP_002312958.1| predicted protein [Populus trichocarpa] gi|118488439|gb|ABK96034.1| unknown [Populus trichocarpa] gi|222849366|gb|EEE86913.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (710), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 132/154 (85%), Positives = 143/154 (92%)

Query: 1   MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVE 60
           MGV+DH  D+FDCS G SK KKR+ LQTVEVKVRIDCEGCERKVKRA+EGMKGVKQV VE
Sbjct: 1   MGVLDHLPDFFDCSGGGSKHKKRKSLQTVEVKVRIDCEGCERKVKRALEGMKGVKQVVVE 60

Query: 61  RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
           RKANKVTVVGYVEPSKVV+R+AHRTGKKAE+WPYVPYD+VAHPYAPGVYD+KAPAGYVR 
Sbjct: 61  RKANKVTVVGYVEPSKVVARVAHRTGKKAELWPYVPYDMVAHPYAPGVYDKKAPAGYVRN 120

Query: 121 ADDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
           A+DPQVSQ+ARASSFEVRYTTAFSDEN  AC IM
Sbjct: 121 AEDPQVSQLARASSFEVRYTTAFSDENPAACVIM 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454207|ref|XP_004144847.1| PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Cucumis sativus] gi|449515734|ref|XP_004164903.1| PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Cucumis sativus]

 Score =  275 bits (702), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 129/154 (83%), Positives = 142/154 (92%)

Query: 1   MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVE 60
           MGV+DH SDYFDCS    K KKR+QLQTVE+K+RIDCEGCERKVKRA+EGMKGVKQVDV+
Sbjct: 1   MGVLDHLSDYFDCSSHGHKHKKRKQLQTVELKIRIDCEGCERKVKRALEGMKGVKQVDVD 60

Query: 61  RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
           RKANK TVVGYVEPSKVV+R+AHRTGKKAE+WPYVPYDVVAHPYAPGVYD+KAPAGYVR+
Sbjct: 61  RKANKATVVGYVEPSKVVARVAHRTGKKAELWPYVPYDVVAHPYAPGVYDKKAPAGYVRK 120

Query: 121 ADDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
           ADDP V Q+ARASS EVRYTTAFSDEN  ACA+M
Sbjct: 121 ADDPNVYQLARASSTEVRYTTAFSDENPAACAVM 154

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507799|ref|XP_003522651.1| PREDICTED: uncharacterized protein LOC100780624 [Glycine max]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 125/154 (81%), Positives = 138/154 (89%)

Query: 1   MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVE 60
           MG +DH S+ FDCS GSSK KKR+QLQTVEVKV++DCEGCERKV++AVEGMKGV QVDVE
Sbjct: 10  MGALDHISELFDCSSGSSKHKKRKQLQTVEVKVKMDCEGCERKVRKAVEGMKGVNQVDVE 69

Query: 61  RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
           RKANKVTVVGYVE SKVV+RIAHRTGKKAE+WPYVPYDVVAHPYAPGVYD+KAP+GYVR 
Sbjct: 70  RKANKVTVVGYVEASKVVARIAHRTGKKAELWPYVPYDVVAHPYAPGVYDKKAPSGYVRN 129

Query: 121 ADDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
            DDP  S +ARASS EVRYTTAFSDEN  AC +M
Sbjct: 130 TDDPHYSHLARASSTEVRYTTAFSDENPSACVVM 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103191|ref|XP_002312959.1| predicted protein [Populus trichocarpa] gi|118486880|gb|ABK95274.1| unknown [Populus trichocarpa] gi|222849367|gb|EEE86914.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 137/154 (88%)

Query: 1   MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVE 60
           MGV+DH S  FDCS GSS+ +K RQLQTVEVK+R+DCEGCERKVKR++EGMKGV QV V+
Sbjct: 1   MGVLDHMSGIFDCSRGSSRHRKYRQLQTVEVKIRLDCEGCERKVKRSLEGMKGVSQVLVD 60

Query: 61  RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
           RK+NKVTVVGYVEP++V++RIAHRTGKKAE+WPYVPYD VAHPY  GVYD+KAPAGYVR 
Sbjct: 61  RKSNKVTVVGYVEPARVLARIAHRTGKKAELWPYVPYDTVAHPYTAGVYDKKAPAGYVRS 120

Query: 121 ADDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
             DPQVSQ ARASSFEVRYTTAFSDEN  ACA+M
Sbjct: 121 NQDPQVSQFARASSFEVRYTTAFSDENPTACAVM 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428033|ref|XP_002278879.1| PREDICTED: uncharacterized protein LOC100260571 isoform 1 [Vitis vinifera] gi|359475023|ref|XP_003631570.1| PREDICTED: uncharacterized protein LOC100260571 isoform 2 [Vitis vinifera] gi|147802513|emb|CAN62146.1| hypothetical protein VITISV_016892 [Vitis vinifera] gi|297744607|emb|CBI37869.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (659), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 123/155 (79%), Positives = 139/155 (89%), Gaps = 1/155 (0%)

Query: 1   MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVE 60
           MG +DH S  FDCSHGSSKLK+R+QLQTVE+KV++DCEGCERKV+RAVEGMKGV QVDV 
Sbjct: 1   MGALDHVSHLFDCSHGSSKLKRRKQLQTVEIKVKMDCEGCERKVRRAVEGMKGVTQVDVV 60

Query: 61  RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
            K +K+TVVGYV+P+KVVSR+AHRTGKKAE+WPYVPYDVVAHPYAPGVYD+KAP GYVR 
Sbjct: 61  PKHHKLTVVGYVDPAKVVSRVAHRTGKKAELWPYVPYDVVAHPYAPGVYDKKAPPGYVRN 120

Query: 121 A-DDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
           A +DPQ S +ARASS EVRYTTAFSDEN  ACAIM
Sbjct: 121 AYEDPQYSHLARASSTEVRYTTAFSDENPAACAIM 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491530|gb|AFK33831.1| unknown [Lotus japonicus]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 140/156 (89%), Gaps = 2/156 (1%)

Query: 1   MGVVDHFSDYFDCS-HGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDV 59
           MG +DH S+ FDCS  G+SK KKR+Q QTVEVKV++DCEGCERKVK++VEGMKGV QV+V
Sbjct: 1   MGALDHISELFDCSSFGNSKYKKRKQFQTVEVKVKMDCEGCERKVKKSVEGMKGVTQVEV 60

Query: 60  ERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVR 119
           ERKA+KVTV GYVEPSKVV+RIAHRTGK+AE+WPYVPYDVVAHPYAPGVYD+KAP+GYVR
Sbjct: 61  ERKASKVTVTGYVEPSKVVARIAHRTGKRAELWPYVPYDVVAHPYAPGVYDKKAPSGYVR 120

Query: 120 RAD-DPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
            ++ DP VS +ARASS EVRYTTAFSDEN  ACA+M
Sbjct: 121 NSEYDPNVSHLARASSTEVRYTTAFSDENPTACAVM 156

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538447|ref|XP_003537715.1| PREDICTED: uncharacterized protein LOC547973 [Glycine max]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/156 (76%), Positives = 141/156 (90%), Gaps = 2/156 (1%)

Query: 1   MGVVDHFSDYFDCSHGSSKLKKRR-QLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDV 59
           MG +DH S+ FDCSH SSKLKK+R Q QTVEVKV++DCEGCERKVK++VEGMKGV +V+V
Sbjct: 1   MGALDHISELFDCSHTSSKLKKKRKQFQTVEVKVKMDCEGCERKVKKSVEGMKGVTEVEV 60

Query: 60  ERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVR 119
           +RKA+KVTV GYVEPSKVVSRIAHRTGK+AE+WPY+PYDVVAHPYAPGVYDRKAP+GYVR
Sbjct: 61  DRKASKVTVSGYVEPSKVVSRIAHRTGKRAELWPYLPYDVVAHPYAPGVYDRKAPSGYVR 120

Query: 120 RAD-DPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
            AD DP+++ +ARASS EV+YTTAFSD+N  AC +M
Sbjct: 121 NADVDPRLTNLARASSTEVKYTTAFSDDNPAACVVM 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797850|ref|XP_002866809.1| hypothetical protein ARALYDRAFT_490624 [Arabidopsis lyrata subsp. lyrata] gi|297312645|gb|EFH43068.1| hypothetical protein ARALYDRAFT_490624 [Arabidopsis lyrata subsp. lyrata]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 118/154 (76%), Positives = 139/154 (90%), Gaps = 1/154 (0%)

Query: 1   MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVE 60
           MGV+DH S+ FDCSH S K+KKR+QLQTVE+KV++DCEGCERKV+R+VEGMKGV  V +E
Sbjct: 1   MGVLDHVSEMFDCSH-SHKMKKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLE 59

Query: 61  RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
            KA+KVTVVGYV+P+KV++R+AHRTGKK E+WPYVPYDVVAHPYA GVYD+KAP+GYVRR
Sbjct: 60  PKASKVTVVGYVDPNKVLARMAHRTGKKVELWPYVPYDVVAHPYAAGVYDKKAPSGYVRR 119

Query: 121 ADDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
           ADDP VSQ+ARASS EVRYTTAFSDEN  AC +M
Sbjct: 120 ADDPGVSQLARASSTEVRYTTAFSDENPAACVVM 153

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
TAIR|locus:2121199	153	FP6 "farnesylated protein 6" [	0.993	1.0	0.759	6.9e-63
TAIR|locus:2131561	153	HIPP25 "heavy metal associated	0.987	0.993	0.703	1.1e-57
TAIR|locus:2156927	147	HIPP27 "heavy metal associated	0.870	0.911	0.674	3.7e-48
TAIR|locus:2026336	152	HIPP20 "heavy metal associated	0.980	0.993	0.567	5.7e-43
TAIR|locus:2017759	152	HIPP22 "heavy metal associated	0.967	0.980	0.490	8.9e-38
TAIR|locus:2135277	158	AT4G39700 [Arabidopsis thalian	0.980	0.955	0.493	2.7e-36
TAIR|locus:2157457	149	HIPP21 "heavy metal associated	0.961	0.993	0.470	1.9e-35
TAIR|locus:2133544	150	AT4G08570 "AT4G08570" [Arabido	0.941	0.966	0.480	1.5e-33
TAIR|locus:2202265	159	AT1G06330 "AT1G06330" [Arabido	0.461	0.446	0.459	3.1e-19
TAIR|locus:4515103273	166	AT3G56891 [Arabidopsis thalian	0.545	0.506	0.443	1.7e-18

TAIR|locus:2121199 FP6 "farnesylated protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 117/154 (75%), Positives = 138/154 (89%)

Query:     1 MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVE 60
             MGV+DH S+ FDCSHG  K+KKR+QLQTVE+KV++DCEGCERKV+R+VEGMKGV  V +E
Sbjct:     1 MGVLDHVSEMFDCSHGH-KIKKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLE 59

Query:    61 RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
              KA+KVTVVGYV+P+KVV+R++HRTGKK E+WPYVPYDVVAHPYA GVYD+KAP+GYVRR
Sbjct:    60 PKAHKVTVVGYVDPNKVVARMSHRTGKKVELWPYVPYDVVAHPYAAGVYDKKAPSGYVRR 119

Query:   121 ADDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
              DDP VSQ+ARASS EVRYTTAFSDEN  AC +M
Sbjct:   120 VDDPGVSQLARASSTEVRYTTAFSDENPAACVVM 153

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0010286 "heat acclimation" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2131561 HIPP25 "heavy metal associated isoprenylated plant protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 109/155 (70%), Positives = 132/155 (85%)

Query:     1 MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVE 60
             MGV+DH S+YFDCSHGSSK  + + LQTV+V+V IDCEGCERKV+RA+EGM+G++ V +E
Sbjct:     1 MGVLDHVSEYFDCSHGSSK--RHKSLQTVDVRVLIDCEGCERKVRRALEGMRGIRDVTIE 58

Query:    61 RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
               A KVTVVGYVEP+KVV+RI HRTGK+AE++P+VPYDVVAHPYA GVYD +AP GYVR 
Sbjct:    59 PNAQKVTVVGYVEPNKVVARIIHRTGKRAELYPFVPYDVVAHPYASGVYDNRAPTGYVRN 118

Query:   121 AD-DPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
              + DP VS++ARASS EVRYTTAFSDEN  AC +M
Sbjct:   119 TEYDPHVSRLARASSTEVRYTTAFSDENASACVVM 153

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2156927 HIPP27 "heavy metal associated isoprenylated plant protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 91/135 (67%), Positives = 114/135 (84%)

Query:    21 KKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSR 80
             KK +Q Q VE+KV++DCEGCER+V+++VEGMKGV +V V+ K +K+TV G+V+PSKVV R
Sbjct:    13 KKLKQFQKVEIKVKMDCEGCERRVRKSVEGMKGVSKVTVDPKQSKLTVEGFVQPSKVVHR 72

Query:    81 IAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRRA-DDPQVSQIARASSFEVRY 139
             + HRTGKKAE+WPYVPY+VV HPYAPG YD+KAP GYVR A  DP V+ +ARASSFEV+Y
Sbjct:    73 VMHRTGKKAELWPYVPYEVVPHPYAPGAYDKKAPPGYVRNALADPLVAPLARASSFEVKY 132

Query:   140 TTAFSDENTQACAIM 154
             T+AFSD+N  AC IM
Sbjct:   133 TSAFSDDNPNACTIM 147

GO:0005737 "cytoplasm" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2026336 HIPP20 "heavy metal associated isoprenylated plant protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 88/155 (56%), Positives = 113/155 (72%)

Query:     1 MGVVDHFSDYF-DCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDV 59
             MG +D  S+Y  D    + K +KR+ +QTV +KV++DC+GCER+VK AV  MKGVK V+V
Sbjct:     1 MGALDSLSEYISDYFRVTRKRRKRKVMQTVNIKVKMDCDGCERRVKNAVSSMKGVKSVEV 60

Query:    60 ERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVR 119
              RK +KVTV GYVEP KV+ RI  RTGKKAEIWPYVPY++VA+PYA G YD+KAPAGYVR
Sbjct:    61 NRKIHKVTVSGYVEPKKVLKRI-ERTGKKAEIWPYVPYNMVAYPYAVGTYDKKAPAGYVR 119

Query:   120 RADDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
             +++  Q+  +  A   E  Y + FSDEN  AC +M
Sbjct:   120 KSEQSQLQLLPGAP--ENHYISLFSDENPNACTVM 152

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2017759 HIPP22 "heavy metal associated isoprenylated plant protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 77/157 (49%), Positives = 108/157 (68%)

Query:     1 MGVVDHFSDYFDCSH---GSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQV 57
             MG +++ S+YF  +H      K KKR+ +QTV +KV+IDC+GCERK+K AV  +KG K V
Sbjct:     1 MGALNYLSEYFS-NHFYVSIRKRKKRKVMQTVNIKVKIDCDGCERKIKNAVSSIKGAKSV 59

Query:    58 DVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGY 117
             +V RK +KVTV GYV+P KV+  +     KKAE+WPYVPY +VA+PYA G YD++AP G+
Sbjct:    60 EVNRKMHKVTVSGYVDPKKVLKTVQSTGKKKAELWPYVPYTMVAYPYAAGAYDKRAPPGF 119

Query:   118 VRRADDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
             VR+++  Q    A+  S + +  + FSDEN  AC +M
Sbjct:   120 VRKSEQAQ----AQPGSTDDKLMSLFSDENPNACTVM 152

GO:0005737 "cytoplasm" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2135277 AT4G39700 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 77/156 (49%), Positives = 106/156 (67%)

Query:     2 GVVDHFSDYFDC--SHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDV 59
             G +++ S+      SH   K KK++Q QTVE+KVR+DC+GC  K+K ++  +KGVK V++
Sbjct:     5 GTLEYISELIGNGGSHSYGKRKKKKQFQTVELKVRMDCDGCVLKIKNSLSSLKGVKTVEI 64

Query:    60 ERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVR 119
              +K  KVTV GY + SKV+ + A  TGKKAEIWPYVPY++VA PY    YD+KAP GYVR
Sbjct:    65 NKKQQKVTVSGYADASKVLKK-AKATGKKAEIWPYVPYNLVAQPYIAQAYDKKAPPGYVR 123

Query:   120 RADDPQVSQIARASSFE-VRYTTAFSDENTQACAIM 154
             + D P V+    A  ++   YT+ FSD+N  AC+IM
Sbjct:   124 KVD-PNVTTGTMAVYYDDPSYTSLFSDDNPNACSIM 158

GO:0005737 "cytoplasm" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2157457 HIPP21 "heavy metal associated isoprenylated plant protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 73/155 (47%), Positives = 111/155 (71%)

Query:     1 MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVE 60
             MG  D+ S +   ++ ++K K R+ LQTV++KV++DC+GCER+V+  V  MKGVK V+V 
Sbjct:     1 MGAFDYISSFCSYTYANAKTK-RKPLQTVDIKVKMDCDGCERRVRNVVRRMKGVKSVEVN 59

Query:    61 RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
             RK +++TV G+V+P+KV+ R+   TGKKAE WPY+P  +V +P+APG+YD++APAG++R 
Sbjct:    60 RKQSRITVNGHVDPNKVLKRVKS-TGKKAEFWPYIPQHMVYYPFAPGMYDKRAPAGHIR- 117

Query:   121 ADDPQVSQIARASSFEVRYTTAFSDENTQA-CAIM 154
               +P  S    A++ E  Y + FSD+N  A C+IM
Sbjct:   118 --NPTQS-FPTANAPEENYVSLFSDDNVHAACSIM 149

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA;IGI

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2133544 AT4G08570 "AT4G08570" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 74/154 (48%), Positives = 100/154 (64%)

Query:     2 GVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVE 60
             G +++ SD         K KK++Q+QTV ++V RIDCEGCERK+K  + G+KGVK VDV+
Sbjct:     5 GTMEYISDLLK----KRKRKKKKQMQTVALRVARIDCEGCERKIKHVLSGVKGVKSVDVD 60

Query:    61 RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
              K  KVTV GY++P KV+   A  T KK E+WPYVPY +VA+PY    YD+KAP   VR+
Sbjct:    61 VKLQKVTVTGYIDPKKVLEA-AKSTKKKVELWPYVPYTMVANPYISQAYDKKAPPNMVRK 119

Query:   121 ADDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
                P  + +   ++ +  YT  FSDEN  +CAIM
Sbjct:   120 V--PDTASV-NETTVDDSYTIMFSDENPNSCAIM 150

GO:0005575 "cellular_component" evidence=ND

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2202265 AT1G06330 "AT1G06330" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
 Identities = 34/74 (45%), Positives = 53/74 (71%)

Query:    25 QLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHR 84
             QLQT+E++V +DC GCE +VK A++ M+GV  V+++    KVTV GY +  KV+ ++  +
Sbjct:     9 QLQTIEMRVHMDCVGCESRVKNALQKMRGVDAVEIDMVQQKVTVTGYADQKKVLKKV-RK 67

Query:    85 TGKKAEIW--PYVP 96
             TG++AE+W  PY P
Sbjct:    68 TGRRAELWQLPYNP 81

GO:0005507 "copper ion binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006825 "copper ion transport" evidence=ISS

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:4515103273 AT3G56891 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 39/88 (44%), Positives = 59/88 (67%)

Query:    11 FDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG 70
             FD  HG+S+L     L  VE+ V +DC+GCE+KV+RA+  + GV  V+++    KVTV G
Sbjct:     2 FDWIHGNSRLPIA--LSIVELLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTG 59

Query:    71 YVEPSKVVSRIAHRTGKKAEIWPYVPYD 98
             YV+  +V+ ++  RTG+ AE WP+ PY+
Sbjct:    60 YVDREEVL-KMVKRTGRTAEYWPF-PYN 85

GO:0005886 "plasma membrane" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SZN7	HIP26_ARATH	No assigned EC number	0.7597	0.9935	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	154
cd00371	63	cd00371, HMA, Heavy-metal-associated domain (HMA)	4e-11
pfam00403	62	pfam00403, HMA, Heavy-metal-associated domain	5e-09
PLN02957	238	PLN02957, PLN02957, copper, zinc superoxide dismut	3e-06
COG2608	71	COG2608, CopZ, Copper chaperone [Inorganic ion tra	1e-04

>gnl|CDD|238219 cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones

 Score = 54.9 bits (133), Expect = 4e-11
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 35 IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVE-PSKVVSRIAHRTGKKAE 90
          + C GC  K+++A+E + GV+ V+V+ +  K TV    E   + +       G KA 
Sbjct: 7  MTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAGYKAR 63

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions. Length = 63

>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain

 Score = 49.5 bits (119), Expect = 5e-09
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 32 KVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKV 77
             + C GC +KV++A+  + GV  V V+ +  KVTV G  +P K+
Sbjct: 4  VPGMTCAGCAKKVEKALSKLPGVSSVSVDLETGKVTVTGDPDPLKL 49

Length = 62

>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 25 QLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHR 84
          +L T E  V + CEGC   VK  +E ++GVK V+V+     V V+G   P K ++    +
Sbjct: 5  ELLT-EFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLG-SSPVKAMTAALEQ 62

Query: 85 TGKKA 89
          TG+KA
Sbjct: 63 TGRKA 67

Length = 238

>gnl|CDD|225328 COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 37 CEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKV 77
          C  C + V++A+E + GV  VDV+ +    TV    + +KV
Sbjct: 13 CGHCVKTVEKALEEVDGVASVDVDLEKGTATVT--FDSNKV 51

Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
PF00403	62	HMA: Heavy-metal-associated domain; InterPro: IPR0	99.54
COG2608	71	CopZ Copper chaperone [Inorganic ion transport and	99.45
KOG1603	73	consensus Copper chaperone [Inorganic ion transpor	99.44
KOG4656	247	consensus Copper chaperone for superoxide dismutas	99.07
PLN02957	238	copper, zinc superoxide dismutase	98.59
PRK10671	834	copA copper exporting ATPase; Provisional	98.52
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	98.29
TIGR00003	68	copper ion binding protein. This model describes a	98.13
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	97.69
PRK10671	834	copA copper exporting ATPase; Provisional	97.57
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	97.37
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	97.29
TIGR02052	92	MerP mercuric transport protein periplasmic compon	95.42
COG1888	97	Uncharacterized protein conserved in archaea [Func	93.04
PF02680	95	DUF211: Uncharacterized ArCR, COG1888; InterPro: I	90.95
PRK13748	561	putative mercuric reductase; Provisional	90.63
cd00371	63	HMA Heavy-metal-associated domain (HMA) is a conse	90.34
PF01206	70	TusA: Sulfurtransferase TusA; InterPro: IPR001455	89.72
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	82.89
PRK11018	78	hypothetical protein; Provisional	81.34
cd03421	67	SirA_like_N SirA_like_N, a protein of unknown func	80.58

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures

Probab=99.54  E-value=5.4e-14  Score=87.72  Aligned_cols=58  Identities=34%  Similarity=0.611  Sum_probs=54.0

Q ss_pred             EEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec---CCHHHHHHHHHHhhCCc
Q 031710           30 EVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY---VEPSKVVSRIAHRTGKK   88 (154)
Q Consensus        30 ~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~---~~~~~v~~~i~~~~G~~   88 (154)
                      +|+| ||+|++|+.+|+++|.+++||.++.+|+.+++++|.+.   +++++|.++|+ ++||+
T Consensus         1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~   62 (62)
T PF00403_consen    1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE   62 (62)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred             CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence            5889 99999999999999999999999999999999999965   46799999999 99984

These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....

>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.45  E-value=7.7e-13  Score=85.15  Aligned_cols=66  Identities=29%  Similarity=0.493  Sum_probs=58.9

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEE--e-cCCHHHHHHHHHHhhCCceEec
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV--G-YVEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~--g-~~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      |++..|+| +|+|.+|+.+|+++|.+++||.++++|+..++++|+  + .++.++|.++|+ ++||.+..+
T Consensus         1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~~   70 (71)
T COG2608           1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEEI   70 (71)
T ss_pred             CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeeec
Confidence            45678999 999999999999999999999999999999776665  4 479999999999 999988764

>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.44  E-value=7.8e-13  Score=85.53  Aligned_cols=68  Identities=49%  Similarity=0.920  Sum_probs=62.7

Q ss_pred             CceEEEEEEcCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhC-CceEecc
Q 031710           25 QLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTG-KKAEIWP   93 (154)
Q Consensus        25 ~~~~~~l~Vgm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G-~~a~~~~   93 (154)
                      .+++.++++.|+|.+|+.+|++.|+.++||.++.+|...++++|.|.+++..|++.|+ +.| +++++|.
T Consensus         3 ~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~-k~~~k~~~~~~   71 (73)
T KOG1603|consen    3 PIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLK-KTGGKRAELWK   71 (73)
T ss_pred             CccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHH-hcCCCceEEec
Confidence            4567788899999999999999999999999999999999999999999999999999 677 8888775

>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]

Probab=99.07  E-value=6.8e-10  Score=84.05  Aligned_cols=69  Identities=28%  Similarity=0.486  Sum_probs=64.4

Q ss_pred             eEEEEEEcCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEecccCC
Q 031710           27 QTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVP   96 (154)
Q Consensus        27 ~~~~l~Vgm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~~~~p   96 (154)
                      -+.+|.|.|+|++|+..|++.|..++||.+|+||++++.|.|.+...+.+|...|+ .+|.+|.+....-
T Consensus         7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~G~G~   75 (247)
T KOG4656|consen    7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLRGAGK   75 (247)
T ss_pred             eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEecCCc
Confidence            45689999999999999999999999999999999999999999999999999999 9999999877643

>PLN02957 copper, zinc superoxide dismutase

Probab=98.59  E-value=5.7e-07  Score=70.43  Aligned_cols=72  Identities=29%  Similarity=0.448  Sum_probs=63.4

Q ss_pred             ceEEEEEEcCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEecccCCCC
Q 031710           26 LQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYD   98 (154)
Q Consensus        26 ~~~~~l~Vgm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~~~~p~~   98 (154)
                      .++++|.++|+|+.|+.+|+++|.+++||..+.+|+..++++|........+.+.|+ ++||.++++...+.+
T Consensus         5 ~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~~~~~~~   76 (238)
T PLN02957          5 ELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLIGQGDPE   76 (238)
T ss_pred             cEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEecCCCcc
Confidence            345678889999999999999999999999999999999999987778899999999 999999888764433

>PRK10671 copA copper exporting ATPase; Provisional

Probab=98.52  E-value=3.4e-07  Score=82.96  Aligned_cols=64  Identities=25%  Similarity=0.477  Sum_probs=57.2

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEecc
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      ++++|.| ||+|.+|+.+|+++|++++||..+.+|+.  +.+|.+..+.+.+.+.|+ +.||.++...
T Consensus         3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~   67 (834)
T PRK10671          3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIK-QAGYDASVSH   67 (834)
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHH-hcCCcccccc
Confidence            5688999 99999999999999999999999999995  455666679999999999 9999998754

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.29  E-value=2.5e-06  Score=76.04  Aligned_cols=63  Identities=24%  Similarity=0.556  Sum_probs=56.6

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec---CC-HHHHHHHHHHhhCCceEe
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY---VE-PSKVVSRIAHRTGKKAEI   91 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~---~~-~~~v~~~i~~~~G~~a~~   91 (154)
                      .+.+|.| ||+|..|+.+|| +|++++||.++.+|+.++++.|..+   .+ .+++.+.++ +.||.+..
T Consensus         2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~~~   69 (713)
T COG2217           2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSARL   69 (713)
T ss_pred             ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccccc
Confidence            4568999 999999999999 9999999999999999999999843   45 789999999 99998765

>TIGR00003 copper ion binding protein

Probab=98.13  E-value=3.7e-05  Score=45.12  Aligned_cols=62  Identities=24%  Similarity=0.387  Sum_probs=51.7

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCce
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKA   89 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a   89 (154)
                      ++..+.| +++|..|...+++.+...+++..+.+++...++.+..   ..+...+...+. ..|+.+
T Consensus         2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~   67 (68)
T TIGR00003         2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGYEV   67 (68)
T ss_pred             cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCCCc
Confidence            4567999 9999999999999999999999999999999888873   246777777777 777653

This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.69  E-value=0.00012  Score=66.09  Aligned_cols=67  Identities=28%  Similarity=0.554  Sum_probs=61.1

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEeccc
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      +++.|.| ||.|.+|..+|++.|.+++||.++++++.++++.|..   .+.+.++.+.|+ .+|+.+.+...
T Consensus       146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie-~~~~~~~~~~~  216 (951)
T KOG0207|consen  146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIE-ETGFEASVRPY  216 (951)
T ss_pred             CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHH-hhcccceeeec
Confidence            6789999 9999999999999999999999999999999999874   378999999999 99998777654

>PRK10671 copA copper exporting ATPase; Provisional

Probab=97.57  E-value=0.0003  Score=64.00  Aligned_cols=64  Identities=23%  Similarity=0.478  Sum_probs=57.0

Q ss_pred             EEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEec
Q 031710           28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        28 ~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      ++.+.+ ||+|.+|...|++.+.+++||.++.+++.++++.+.+..+++++.+.++ +.||.+.++
T Consensus       100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~-~~Gy~a~~~  164 (834)
T PRK10671        100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVE-KAGYGAEAI  164 (834)
T ss_pred             eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHH-hcCCCcccc
Confidence            567889 9999999999999999999999999999999988876668888888998 999987644

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.37  E-value=0.00055  Score=62.00  Aligned_cols=68  Identities=22%  Similarity=0.381  Sum_probs=61.2

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEeccc
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      ..+..|.+ ||+|..|...|++.|++++||.++.+.+...+..+..   .+.++.+.+.++ +.|+.+++...
T Consensus        68 ~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf~a~~i~~  139 (951)
T KOG0207|consen   68 ASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGFSAELIES  139 (951)
T ss_pred             cceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCccceehhc
Confidence            34678999 9999999999999999999999999999999999873   378999999999 99999988765

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=97.29  E-value=0.00099  Score=60.04  Aligned_cols=66  Identities=30%  Similarity=0.342  Sum_probs=54.2

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec-CCHHHHHHHHHHhhCCceEec
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY-VEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~-~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      -.++.+.+ +|+|.+|..++++++.+++||..+.+++.++++.+... ...+++.+.++ +.||.+..+
T Consensus        52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~-~~Gy~a~~~  119 (741)
T PRK11033         52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQ-KAGFSLRDE  119 (741)
T ss_pred             CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHH-hcccccccc
Confidence            45678899 99999999999999999999999999999998887632 12267778888 889876544

>TIGR02052 MerP mercuric transport protein periplasmic component

Probab=95.42  E-value=0.32  Score=30.63  Aligned_cols=64  Identities=22%  Similarity=0.357  Sum_probs=48.5

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEe
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEI   91 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~   91 (154)
                      .++.+.+ ++.|..|...++..+...+++....++.....+.+..   ..+...+...+. ..|+.+++
T Consensus        23 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~   90 (92)
T TIGR02052        23 QTVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT-DAGYPSSL   90 (92)
T ss_pred             eEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcCCCeEe
Confidence            3556888 9999999999999999999988888888777765541   245666656666 77776554

This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).

>COG1888 Uncharacterized protein conserved in archaea [Function unknown]

Probab=93.04  E-value=1.1  Score=29.99  Aligned_cols=68  Identities=13%  Similarity=0.204  Sum_probs=44.3

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEE-----eCC--CcEEEEEec-CCHHHHHHHHHHhhCCceEeccc
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDV-----ERK--ANKVTVVGY-VEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~v-----d~~--~~~v~V~g~-~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      ..++.|.| .-+-.--.--+-+.|++++||+.|.+     |..  +-+++|.|. ++-++|.+.|+ +.|-.++.+..
T Consensus         5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE-~~Gg~IHSiDe   81 (97)
T COG1888           5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIE-ELGGAIHSIDE   81 (97)
T ss_pred             ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHH-HcCCeeeehhh
Confidence            44556666 33322234455677888888876654     333  345666664 89999999999 99977665543

>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function

Probab=90.95  E-value=1.7  Score=29.35  Aligned_cols=66  Identities=12%  Similarity=0.262  Sum_probs=43.7

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEE-----eCCCcEEE--EEec-CCHHHHHHHHHHhhCCceEecc
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDV-----ERKANKVT--VVGY-VEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~v-----d~~~~~v~--V~g~-~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      ++++.|.| .-+-+. .-.+-++|.+++||..|.+     |..+..+.  |.|. ++.++|.++|+ +.|-.+.-+.
T Consensus         4 irRlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie-~~Gg~IHSID   78 (95)
T PF02680_consen    4 IRRLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIE-ELGGVIHSID   78 (95)
T ss_dssp             EEEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHH-HTT-EEEEEE
T ss_pred             eeEEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHH-HcCCeEEeee
Confidence            45667777 444333 4567788999999987754     44555444  4575 89999999999 9997665543

; PDB: 3BPD_I 2RAQ_F 2X3D_E.

>PRK13748 putative mercuric reductase; Provisional

Probab=90.63  E-value=1.8  Score=37.54  Aligned_cols=64  Identities=23%  Similarity=0.418  Sum_probs=50.5

Q ss_pred             EEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe--cCCHHHHHHHHHHhhCCceEeccc
Q 031710           30 EVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG--YVEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        30 ~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g--~~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      .+.+ ++.|..|..+++..+...+++....++.....+.+..  ..+...+...+. ..|+..++...
T Consensus         3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~~~~~~   69 (561)
T PRK13748          3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRATLADA   69 (561)
T ss_pred             EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCeeeccCc
Confidence            3668 9999999999999999999999888998888766652  245666666777 78887666554

>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones

Probab=90.34  E-value=1.5  Score=22.59  Aligned_cols=55  Identities=33%  Similarity=0.632  Sum_probs=37.2

Q ss_pred             EEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec--CCHHHHHHHHHHhhC
Q 031710           31 VKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY--VEPSKVVSRIAHRTG   86 (154)
Q Consensus        31 l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~--~~~~~v~~~i~~~~G   86 (154)
                      +.+ ++.|..|...++..+....++.....+.......+...  .+...+...+. ..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   59 (63)
T cd00371           2 LSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIE-DAG   59 (63)
T ss_pred             eeECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHH-HcC
Confidence            345 78899999999999988899877777776666555432  24444444444 444

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.

>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase

Probab=89.72  E-value=1.4  Score=27.29  Aligned_cols=54  Identities=11%  Similarity=0.105  Sum_probs=38.9

Q ss_pred             EEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEE--ecCCHHHHHHHHHHhhCCceEecc
Q 031710           30 EVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV--GYVEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        30 ~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~--g~~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      ++.+ |+.|+....+++++|.+++.-+         .+.|.  .......|...++ +.|+....+.
T Consensus         2 ~lD~rg~~CP~Pll~~~~~l~~l~~G~---------~l~v~~d~~~~~~di~~~~~-~~g~~~~~~~   58 (70)
T PF01206_consen    2 TLDLRGLSCPMPLLKAKKALKELPPGE---------VLEVLVDDPAAVEDIPRWCE-ENGYEVVEVE   58 (70)
T ss_dssp             EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHHHHHHHHHH-HHTEEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHhcCCCC---------EEEEEECCccHHHHHHHHHH-HCCCEEEEEE
Confidence            5788 9999999999999999984322         23333  2345688999998 9999755543

This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=82.89  E-value=2.8  Score=26.14  Aligned_cols=33  Identities=27%  Similarity=0.591  Sum_probs=21.9

Q ss_pred             eEEEEEEcCCCHhH------HHHHHHHHhCCCCceEEEE
Q 031710           27 QTVEVKVRIDCEGC------ERKVKRAVEGMKGVKQVDV   59 (154)
Q Consensus        27 ~~~~l~Vgm~C~~C------~~kI~kal~~~~GV~~v~v   59 (154)
                      .++.+.+.+..++|      ...|+++|..++||.+|+|
T Consensus        34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V   72 (72)
T PF01883_consen   34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV   72 (72)
T ss_dssp             CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred             CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence            44555565555555      5778999999999998875

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>PRK11018 hypothetical protein; Provisional

Probab=81.34  E-value=8.1  Score=24.74  Aligned_cols=55  Identities=9%  Similarity=-0.031  Sum_probs=39.7

Q ss_pred             EEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEe
Q 031710           29 VEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEI   91 (154)
Q Consensus        29 ~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~   91 (154)
                      .++.+ |+.|+.-.-+.+++|.+++.-+.+.|       .+........|...++ +.|+.+..
T Consensus         9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~G~~L~V-------~~d~~~a~~di~~~~~-~~G~~v~~   64 (78)
T PRK11018          9 YRLDMVGEPCPYPAVATLEALPQLKKGEILEV-------VSDCPQSINNIPLDAR-NHGYTVLD   64 (78)
T ss_pred             eeEECCCCcCCHHHHHHHHHHHhCCCCCEEEE-------EeCCccHHHHHHHHHH-HcCCEEEE
Confidence            57889 99999999999999999853222221       1222346678888888 99998753

>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain

Probab=80.58  E-value=5.9  Score=24.30  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=36.1

Q ss_pred             EEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEE--ecCCHHHHHHHHHHhhCCceEec
Q 031710           31 VKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV--GYVEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        31 l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~--g~~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      +.+ |+.|+.-..+++++| ++..-+         .+.|.  .......|...++ +.|+..+..
T Consensus         2 lD~rG~~CP~P~l~~k~al-~~~~g~---------~l~v~~d~~~s~~~i~~~~~-~~G~~~~~~   55 (67)
T cd03421           2 IDARGLACPQPVIKTKKAL-ELEAGG---------EIEVLVDNEVAKENVSRFAE-SRGYEVSVE   55 (67)
T ss_pred             cccCCCCCCHHHHHHHHHH-hcCCCC---------EEEEEEcChhHHHHHHHHHH-HcCCEEEEE
Confidence            567 999999999999999 653222         23332  2345678888998 999988543

The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	3e-22
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	1e-15
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	2e-15
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	3e-14
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	1e-13
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	7e-07
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	4e-06
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	5e-05
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	1e-04

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 83.7 bits (207), Expect = 3e-22
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 14 SHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVE 73
          S  +S    +  L T+E  V++ C+ C   V+++++G+ GV+ V+V  +   V V   + 
Sbjct: 6  SGMASDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLP 65

Query: 74 PSKVVSRIAHRTGKKAEIW 92
            +V + +   TG++A + 
Sbjct: 66 SQEVQALL-EGTGRQAVLK 83

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Length = 68

 Score = 65.9 bits (161), Expect = 1e-15
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 26 LQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRT 85
          +   E  V + C GC   V R +  + GVK  D++    KV +        +++ +  +T
Sbjct: 1  MPKHEFSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLK-KT 58

Query: 86 GKKAEIW 92
          GK     
Sbjct: 59 GKTVSYL 65

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222

 Score = 69.3 bits (169), Expect = 2e-15
 Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 29  VEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKK 88
               + + CE C   +K  ++ + G+  ++ + +   ++V   V PS +++ +    GK 
Sbjct: 8   ATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTL-RNCGKD 66

Query: 89  AEIWPYVPYDVVAHPYAPGVYDRKAPAG 116
           A I      +  A               
Sbjct: 67  AIIRGAGKPNSSAVAILETFQKYTIDQK 94

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Length = 73

 Score = 62.9 bits (153), Expect = 3e-14
 Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 25 QLQTVEVKVRIDCEGCERKVKRAVEGMK-GVKQVDVERKANKVTVVGYVEPSKVVSRIAH 83
          +++  +  V + C GC   V + +  ++  V ++D+  +   V V   +    ++ +I  
Sbjct: 3  EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIK- 61

Query: 84 RTGKKA 89
          +TGK+ 
Sbjct: 62 KTGKEV 67

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 29 VEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKK 88
              + + CE C   +K  ++ + G+  ++ + +   ++V   V PS +++ +    GK 
Sbjct: 9  ATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTL-RNCGKD 67

Query: 89 AEIWPYVPYD 98
          A I      +
Sbjct: 68 AIIRGAGKPN 77

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str} Length = 85

 Score = 43.6 bits (103), Expect = 7e-07
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 14 SHGSSKLKKRRQLQTVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYV 72
           H S +     Q   +   V  + C  C   +K A+E       V  +  +  V V G  
Sbjct: 9  HHSSGRENLYFQGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVS 68

Query: 73 EPSKVVSRIA 82
          + + +   I 
Sbjct: 69 DAAHIAEIIT 78

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A Length = 64

 Score = 41.2 bits (97), Expect = 4e-06
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 28 TVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRI 81
          T+++ V  I CE C   V +AV+       V V+  + KVT+   +   ++ + I
Sbjct: 2  TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAI 56

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A Length = 66

 Score = 38.4 bits (90), Expect = 5e-05
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 37 CEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEI 91
          C  C   V +A++ + GV++V+V  +  +  V G  +P  +V  +    G KAE+
Sbjct: 11 CNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVE-EEGYKAEV 64

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Length = 66

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 37 CEGCERKVKRAVEGMKGVKQVDVERKANKVTV 68
          C  C  K+++ V  ++GV  +DV  +   V V
Sbjct: 12 CNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVV 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	99.65
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	99.57
4a4j_A	69	Pacszia, cation-transporting ATPase PACS; hydrolas	99.56
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	99.54
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	99.54
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	99.45
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	99.4
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	99.4
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	99.39
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	99.39
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	99.37
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	99.36
1mwy_A	73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	99.35
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	99.35
2g9o_A	90	Copper-transporting ATPase 1; menkes disease, solu	99.33
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	99.33
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	99.33
1opz_A	76	Potential copper-transporting ATPase; mutation, fo	99.32
1y3j_A	77	Copper-transporting ATPase 1; ferrodoxin-like fold	99.32
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	99.32
1q8l_A	84	Copper-transporting ATPase 1; metal binding protei	99.32
1fvq_A	72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	99.31
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	99.29
1jww_A	80	Potential copper-transporting ATPase; beta-alpha-b	99.28
2kt2_A	69	Mercuric reductase; nmera, MERA, HMA domain, mercu	99.28
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	99.26
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	99.26
2kyz_A	67	Heavy metal binding protein; structural genomics,	99.25
2kkh_A	95	Putative heavy metal transporter; zinc transport,	99.25
2ofg_X	111	Zinc-transporting ATPase; ferredoxin-like fold, be	99.23
1yjr_A	75	Copper-transporting ATPase 1; metallochaperone, pr	99.22
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	99.21
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	99.18
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	99.16
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	99.1
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	99.09
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	99.06
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	99.04
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	98.77
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	98.76
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	98.68
3bpd_A	100	Uncharacterized protein; heptamer, Mg+2 ION, PSI-2	92.17
2raq_A	97	Conserved protein MTH889; alpha-beta protein, stru	90.57
2x3d_A	96	SSO6206; unknown function; 2.70A {Sulfolobus solfa	87.09
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	86.62
3lvj_C	82	Sulfurtransferase TUSA; protein-protein complex, s	84.16
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	83.82
2jsx_A	95	Protein NAPD; TAT, proofreading, cytoplasm, chaper	82.47
1jdq_A	98	TM006 protein, hypothetical protein TM0983; struct	82.03

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A

Probab=99.65  E-value=6.5e-16  Score=96.76  Aligned_cols=67  Identities=22%  Similarity=0.448  Sum_probs=62.5

Q ss_pred             ceEEEEEEcCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEeccc
Q 031710           26 LQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        26 ~~~~~l~Vgm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      |++.+|+|||+|.+|+.+|+++|++++|| ++++|+.+++++|.+.+++++|.++|+ ++||.+++|+.
T Consensus         1 m~~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~~   67 (68)
T 3iwl_A            1 MPKHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLK-KTGKTVSYLGL   67 (68)
T ss_dssp             -CEEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHH-TTCSCEEEEEC
T ss_pred             CceEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCceEecCC
Confidence            45678888999999999999999999999 999999999999999899999999999 99999999874

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0

Probab=99.57  E-value=1.8e-14  Score=90.96  Aligned_cols=68  Identities=26%  Similarity=0.432  Sum_probs=62.6

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEeccc
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      |++++|.| ||+|.+|+.+|+++|++++||.++.+|+.+++++|..   .+++++|.++|+ ++||.+++++.
T Consensus         1 M~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~Gy~~~~~~~   72 (74)
T 3dxs_X            1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIE-DAGFEAEILAE   72 (74)
T ss_dssp             CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHH-HHTCEEEEEEE
T ss_pred             CcEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HCCCceEEccC
Confidence            56789999 9999999999999999999999999999999999974   368999999999 99999988764

>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A

Probab=99.56  E-value=3.4e-14  Score=88.35  Aligned_cols=65  Identities=25%  Similarity=0.539  Sum_probs=60.4

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEE--ecCCHHHHHHHHHHhhCCceEec
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV--GYVEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~--g~~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      ++++|.| ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.  +.+++++|.++|+ ++||.++++
T Consensus         2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~Gy~~~~~   69 (69)
T 4a4j_A            2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVE-RAGYHARVL   69 (69)
T ss_dssp             EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHH-HTTCEEEEC
T ss_pred             CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHH-HcCCceEeC
Confidence            4678999 999999999999999999999999999999999998  5689999999999 999998763

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A

Probab=99.54  E-value=6.4e-14  Score=88.35  Aligned_cols=68  Identities=19%  Similarity=0.399  Sum_probs=63.2

Q ss_pred             ceEEEEEEcCCCHhHHHHHHHHHhCCC-CceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEeccc
Q 031710           26 LQTVEVKVRIDCEGCERKVKRAVEGMK-GVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        26 ~~~~~l~Vgm~C~~C~~kI~kal~~~~-GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      |.+++|+|.|+|.+|+.+|+++|++++ ||.++++|+.+++++|.+.+++++|.++|+ ++||.+.+|.+
T Consensus         4 m~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~~   72 (73)
T 1cc8_A            4 IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIK-KTGKEVRSGKQ   72 (73)
T ss_dssp             CEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHH-TTSSCEEEEEE
T ss_pred             ceEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHH-HhCCCceeeec
Confidence            567788999999999999999999999 999999999999999998889999999999 99999988753

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}

Probab=99.54  E-value=3.9e-14  Score=89.65  Aligned_cols=68  Identities=19%  Similarity=0.358  Sum_probs=63.4

Q ss_pred             CCceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEeccc
Q 031710           24 RQLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        24 ~~~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      ..|++.+|.| ||+|.+|+.+|+++|++ +||..+.+|+.+++++|... ++++|.++|+ ++||.+++++.
T Consensus         2 ~~m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~-~~Gy~~~~~~~   70 (73)
T 3fry_A            2 DSVEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVE-AAGYQAKLRSS   70 (73)
T ss_dssp             CCCEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHH-HTTCEEEECCS
T ss_pred             CccEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHH-HcCCceEecCc
Confidence            3577889999 99999999999999999 99999999999999999988 9999999999 99999988764

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=7.4e-13  Score=88.88  Aligned_cols=72  Identities=25%  Similarity=0.437  Sum_probs=65.7

Q ss_pred             CCceEEEEEEcCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEecccCC
Q 031710           24 RQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVP   96 (154)
Q Consensus        24 ~~~~~~~l~Vgm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~~~~p   96 (154)
                      ..+.+++|+|.|+|.+|+.+|+++|.+++||.++.+|+.+++++|...+++++|.++|+ ++||.+.++...+
T Consensus        16 ~~~~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~-~~Gy~~~~~~~~~   87 (98)
T 2crl_A           16 GTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLE-GTGRQAVLKGMGS   87 (98)
T ss_dssp             CCCEEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHH-TTTSCEEEEESCC
T ss_pred             ccceEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHH-HhCCceEEccCCC
Confidence            34567789999999999999999999999999999999999999998889999999999 9999999987643

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}

Probab=99.40  E-value=5.9e-13  Score=87.08  Aligned_cols=67  Identities=19%  Similarity=0.259  Sum_probs=58.9

Q ss_pred             hcCCceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCce
Q 031710           22 KRRQLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKA   89 (154)
Q Consensus        22 ~~~~~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a   89 (154)
                      ....+.+++|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|...+++++|.++|+ ++||.+
T Consensus        17 ~~~~~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~-~~Gy~~   84 (85)
T 2k2p_A           17 LYFQGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIIT-AAGYTP   84 (85)
T ss_dssp             -----CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHH-HTTCCC
T ss_pred             ccccccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHH-HcCCCC
Confidence            445677789999 9999999999999999999999999999999999998789999999999 999975

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A

Probab=99.40  E-value=8.1e-13  Score=79.81  Aligned_cols=60  Identities=27%  Similarity=0.490  Sum_probs=56.5

Q ss_pred             EEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCce
Q 031710           29 VEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKA   89 (154)
Q Consensus        29 ~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a   89 (154)
                      ..|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|.+..+.+.|.++|+ ++||.+
T Consensus         3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~-~~G~~~   63 (64)
T 2xmm_A            3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIA-SAGYEV   63 (64)
T ss_dssp             EEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHH-HTTCCC
T ss_pred             EEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHH-HcCCCC
Confidence            46999 9999999999999999999999999999999999997788999999999 999975

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}

Probab=99.39  E-value=3.1e-12  Score=78.98  Aligned_cols=65  Identities=23%  Similarity=0.441  Sum_probs=58.6

Q ss_pred             CceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceE
Q 031710           25 QLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAE   90 (154)
Q Consensus        25 ~~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~   90 (154)
                      .|.++.|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|..   .++.+.|.+.|+ ++||.++
T Consensus         3 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~~~~   71 (71)
T 2l3m_A            3 AMEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIE-DQGYDVQ   71 (71)
T ss_dssp             SEEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHH-HTTCEEC
T ss_pred             CcEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcCCCCC
Confidence            467788999 9999999999999999999999999999999999973   368899999999 9999753

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A

Probab=99.39  E-value=8e-13  Score=81.15  Aligned_cols=62  Identities=29%  Similarity=0.555  Sum_probs=57.2

Q ss_pred             EEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEec
Q 031710           30 EVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        30 ~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      +|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|.+.++.++|.++|+ ++||.+..+
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~-~~Gy~~~~~   65 (66)
T 2roe_A            3 KLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVE-EEGYKAEVL   65 (66)
T ss_dssp             CEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHH-TTTCEEEEC
T ss_pred             EEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHH-HcCCCcEec
Confidence            5889 9999999999999999999999999999999999976678999999999 999987654

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A

Probab=99.37  E-value=6.4e-12  Score=77.28  Aligned_cols=64  Identities=22%  Similarity=0.474  Sum_probs=57.2

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec--CCHHHHHHHHHHhhCCceEe
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY--VEPSKVVSRIAHRTGKKAEI   91 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~--~~~~~v~~~i~~~~G~~a~~   91 (154)
                      +++.|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|...  ++.+.|.+.|+ ++||.+.+
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~G~~~~~   69 (71)
T 2xmw_A            3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVE-RAGYHARV   69 (71)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHH-HHTCEEEE
T ss_pred             cEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHH-HcCCCcee
Confidence            4578999 99999999999999999999999999999999999743  67889999999 99998765

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A

Probab=99.36  E-value=5.5e-12  Score=77.92  Aligned_cols=66  Identities=27%  Similarity=0.411  Sum_probs=59.0

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEec
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      ++++.|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|..   .++.+.|.+.|+ ++||.+.+.
T Consensus         2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~~~~~~   71 (72)
T 1osd_A            2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATA-DAGYPSSVK   71 (72)
T ss_dssp             EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHH-HTTCCCEEC
T ss_pred             ceEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcCCCeEec
Confidence            45678999 9999999999999999999999999999999999974   367899999999 999987653

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A

Probab=99.35  E-value=9.7e-12  Score=77.55  Aligned_cols=66  Identities=30%  Similarity=0.353  Sum_probs=58.6

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecC-CHHHHHHHHHHhhCCceEec
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYV-EPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~-~~~~v~~~i~~~~G~~a~~~   92 (154)
                      |.++.|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|.... ..+.|.+.|+ ++||.+...
T Consensus         2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~-~~Gy~~~~~   69 (73)
T 1mwy_A            2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQ-KAGYSLRDE   69 (73)
T ss_dssp             CEEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHH-HHTCEEEEC
T ss_pred             CeEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHH-HcCCccccc
Confidence            67788999 999999999999999999999999999999999998542 3678999999 999987653

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A

Probab=99.35  E-value=7.4e-12  Score=77.33  Aligned_cols=65  Identities=20%  Similarity=0.338  Sum_probs=58.3

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec---CCHHHHHHHHHHhhCCceEec
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY---VEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~---~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      ++..|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|...   ++.+.|.+.|+ ++||.+.+.
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~~~~~~   71 (72)
T 1aw0_A            3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIE-DMGFDATLS   71 (72)
T ss_dssp             EEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHTCEEEEC
T ss_pred             eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHH-HCCCCcEeC
Confidence            3568999 99999999999999999999999999999999999743   57899999999 999987654

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A

Probab=99.33  E-value=6.5e-12  Score=82.49  Aligned_cols=67  Identities=16%  Similarity=0.261  Sum_probs=60.0

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhh---CCceEeccc
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRT---GKKAEIWPY   94 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~---G~~a~~~~~   94 (154)
                      .++.|.| ||+|.+|+.+|+++|.+++||.++.+|+.+++++|..   .++.++|.++|+ ++   ||.+.++.+
T Consensus         3 ~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~-~~g~Ggy~~~~~~~   76 (90)
T 2g9o_A            3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIE-AVSPGLYRVSITSE   76 (90)
T ss_dssp             EEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHH-TTSTTTCEEECCCC
T ss_pred             cEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHH-hccCCCeEEEEeCC
Confidence            3467999 9999999999999999999999999999999999974   367889999999 99   598888775

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A

Probab=99.33  E-value=1.4e-11  Score=76.93  Aligned_cols=65  Identities=20%  Similarity=0.426  Sum_probs=58.8

Q ss_pred             EEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEecc
Q 031710           28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        28 ~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      ++.|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|..   .++.++|.+.|+ ++||.+.+..
T Consensus         3 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~Gy~~~~~~   71 (75)
T 3cjk_B            3 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID-DMGFDAVIHN   71 (75)
T ss_dssp             EEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HTTCCEEEEE
T ss_pred             EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcCCceEeec
Confidence            567999 9999999999999999999999999999999999974   357899999999 9999987654

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A

Probab=99.33  E-value=1.3e-11  Score=74.83  Aligned_cols=63  Identities=25%  Similarity=0.432  Sum_probs=56.6

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCce
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKA   89 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a   89 (154)
                      |.+..|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|..   .++.+.|.+.|+ ++||.+
T Consensus         1 m~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~~~   67 (69)
T 2qif_A            1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIE-DQGYDV   67 (69)
T ss_dssp             CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HTTCEE
T ss_pred             CeEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcCCCc
Confidence            35668999 9999999999999999999999999999999999973   367889999999 999865

>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A

Probab=99.32  E-value=1.2e-11  Score=76.83  Aligned_cols=67  Identities=18%  Similarity=0.422  Sum_probs=60.2

Q ss_pred             CceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEec
Q 031710           25 QLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        25 ~~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      .+.+..|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|..   .++.+.|.+.|+ ++||.+.++
T Consensus         4 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~~~~~~   74 (76)
T 1opz_A            4 EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE-KLGYHVVIE   74 (76)
T ss_dssp             CCEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHH-HHTCEEECC
T ss_pred             cceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HCCCceecC
Confidence            467788999 9999999999999999999999999999999999973   357899999999 999987654

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A

Probab=99.32  E-value=4.2e-12  Score=80.03  Aligned_cols=67  Identities=19%  Similarity=0.321  Sum_probs=60.8

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEecc
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      |+++.|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|..   .++.+.|.+.|+ ++||.+.++.
T Consensus         2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~Gy~~~~~~   72 (77)
T 1y3j_A            2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIR-ELGFGATVIE   72 (77)
T ss_dssp             CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHH-HHTSCEEEES
T ss_pred             CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcCCceEECC
Confidence            67789999 9999999999999999999999999999999999974   257889999999 9999987764

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A

Probab=99.32  E-value=9.2e-12  Score=78.72  Aligned_cols=69  Identities=19%  Similarity=0.387  Sum_probs=61.3

Q ss_pred             CCceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec---CCHHHHHHHHHHhhCCceEecc
Q 031710           24 RQLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY---VEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        24 ~~~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~---~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      ..+.++.|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|...   ++.++|.++|+ ++||.+.+..
T Consensus         5 ~~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~Gy~~~~~~   77 (79)
T 1kvi_A            5 MGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID-DMGFDAVIHN   77 (79)
T ss_dssp             TTCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHH-HHCCCEEECC
T ss_pred             CCcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHH-HCCCceEecC
Confidence            3466788999 99999999999999999999999999999999999742   57899999999 9999887654

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A

Probab=99.32  E-value=9.4e-12  Score=80.19  Aligned_cols=68  Identities=18%  Similarity=0.343  Sum_probs=61.2

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec---CCHHHHHHHHHHhhCCceEeccc
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY---VEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~---~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      ..++.|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|...   ++.+.|.+.|+ ++||.+.++..
T Consensus         8 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~Gy~~~~~~~   79 (84)
T 1q8l_A            8 EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIE-AMGFPAFVKKQ   79 (84)
T ss_dssp             CEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHH-HTTCCEECSCC
T ss_pred             ceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcCCceEecCC
Confidence            35678999 99999999999999999999999999999999999843   57899999999 99999887764

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B

Probab=99.31  E-value=1.2e-11  Score=76.32  Aligned_cols=65  Identities=23%  Similarity=0.401  Sum_probs=59.1

Q ss_pred             EEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe--cCCHHHHHHHHHHhhCCceEecc
Q 031710           28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG--YVEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        28 ~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g--~~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      ++.|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|..  .++.+.|.+.|+ ++||.+.++.
T Consensus         3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~G~~~~~~~   70 (72)
T 1fvq_A            3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIE-DCGFDCEILR   70 (72)
T ss_dssp             EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHH-HHTCCEEEEE
T ss_pred             EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHH-HCCCceEEcc
Confidence            467999 9999999999999999999999999999999999974  367899999999 9999988774

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1

Probab=99.29  E-value=1.6e-11  Score=74.81  Aligned_cols=61  Identities=31%  Similarity=0.515  Sum_probs=56.0

Q ss_pred             EEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec---CCHHHHHHHHHHhhCCceEe
Q 031710           30 EVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY---VEPSKVVSRIAHRTGKKAEI   91 (154)
Q Consensus        30 ~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~---~~~~~v~~~i~~~~G~~a~~   91 (154)
                      .|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|...   ++.++|.+.|+ ++||.+++
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~~~~~   67 (68)
T 1cpz_A            3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAIN-ELGYQAEV   67 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-TTSSCEEE
T ss_pred             EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcCCCccc
Confidence            5889 99999999999999999999999999999999999743   67899999999 99998765

>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A

Probab=99.28  E-value=1.9e-11  Score=77.09  Aligned_cols=68  Identities=18%  Similarity=0.327  Sum_probs=60.8

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEeccc
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      |.+..|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|..   .++.+.|.+.|+ ++||.+.++..
T Consensus         2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~~~~~~~~   73 (80)
T 1jww_A            2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD-KLGYKLKLKGE   73 (80)
T ss_dssp             CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHH-HHTSEEEECCS
T ss_pred             ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcCCeEEecCc
Confidence            55678999 9999999999999999999999999999999999973   357889999999 99999887653

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A

Probab=99.28  E-value=1.9e-11  Score=75.02  Aligned_cols=62  Identities=24%  Similarity=0.425  Sum_probs=56.1

Q ss_pred             EEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec--CCHHHHHHHHHHhhCCceEec
Q 031710           30 EVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY--VEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        30 ~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~--~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      +|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|...  .+.++|.+.|+ ++||.+.+.
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~Gy~~~~~   67 (69)
T 2kt2_A            3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVA-GLGYKATLA   67 (69)
T ss_dssp             CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHH-TTTSEEECC
T ss_pred             EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHH-HCCCceEeC
Confidence            4889 99999999999999999999999999999999998743  57899999999 999987654

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}

Probab=99.26  E-value=2.6e-11  Score=73.47  Aligned_cols=61  Identities=21%  Similarity=0.376  Sum_probs=55.0

Q ss_pred             EEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec--CCHHHHHHHHHHhhCCce
Q 031710           28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY--VEPSKVVSRIAHRTGKKA   89 (154)
Q Consensus        28 ~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~--~~~~~v~~~i~~~~G~~a   89 (154)
                      +.+|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|...  .+.++|.+.|+ ++||.+
T Consensus         2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~G~~~   65 (66)
T 1yg0_A            2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALL-DAGQEV   65 (66)
T ss_dssp             EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHH-HHTCCC
T ss_pred             eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCCc
Confidence            357899 99999999999999999999999999999999999743  47889999999 999864

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}

Probab=99.26  E-value=1.7e-11  Score=74.96  Aligned_cols=64  Identities=30%  Similarity=0.498  Sum_probs=57.3

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceE
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAE   90 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~   90 (154)
                      +.+..|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|..   .++.+.+.+.|+ ++||.+.
T Consensus         2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~~~~   69 (71)
T 2ldi_A            2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIA-ALGYTLA   69 (71)
T ss_dssp             CEEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHH-TTTCEEE
T ss_pred             cEEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcCCCcc
Confidence            45678999 9999999999999999999999999999999999973   357788999999 9999764

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}

Probab=99.25  E-value=1.3e-11  Score=75.86  Aligned_cols=61  Identities=25%  Similarity=0.426  Sum_probs=54.9

Q ss_pred             EEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEec
Q 031710           29 VEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        29 ~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      ..|.| ||+|.+|+.+|+++|.++ ||..+.+|+..++++|....+ ++|.++|+ ++||.+.+.
T Consensus         3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~-~~Gy~~~~~   64 (67)
T 2kyz_A            3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLE-EIDYPVESY   64 (67)
T ss_dssp             EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHH-TTTCCCCBC
T ss_pred             EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHH-HcCCceeeE
Confidence            57999 999999999999999999 999999999999999986544 88999999 999986543

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}

Probab=99.25  E-value=6.4e-11  Score=78.08  Aligned_cols=72  Identities=21%  Similarity=0.286  Sum_probs=63.7

Q ss_pred             hcCCceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec---CCHHHHHHHHHHhhCCceEeccc
Q 031710           22 KRRQLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY---VEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        22 ~~~~~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~---~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      ....|.++.|.| ||+|.+|+.+|+++|..++||..+.+|+..++++|...   ++.+.|.+.|+ .+||.+.++..
T Consensus        11 ~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~Gy~~~~~~~   86 (95)
T 2kkh_A           11 KVKKLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALN-EARLEANVRVN   86 (95)
T ss_dssp             CSSCSEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHTCCEEESCC
T ss_pred             cccceEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHH-HcCCceEEecC
Confidence            345678889999 99999999999999999999999999999999999843   57889999999 99999877654

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A

Probab=99.22  E-value=3.7e-11  Score=74.67  Aligned_cols=64  Identities=19%  Similarity=0.396  Sum_probs=57.0

Q ss_pred             EEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec---CCHHHHHHHHHHhhCCceEec
Q 031710           28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY---VEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        28 ~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~---~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      ++.|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|...   ++.+.|.+.|+ ++||.+.+.
T Consensus         5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~~~~~~   72 (75)
T 1yjr_A            5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIE-SLGFEPSLV   72 (75)
T ss_dssp             CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHH-HHHCEEEES
T ss_pred             EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcCCCceee
Confidence            457999 99999999999999999999999999999999999743   46788999999 999987654

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=99.21  E-value=6.6e-11  Score=83.23  Aligned_cols=65  Identities=17%  Similarity=0.363  Sum_probs=59.2

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec---CCHHHHHHHHHHhhCCceEec
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY---VEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~---~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      .++.|.| ||+|.+|+.+|+++|++++||.++.+|+.+++++|...   +++++|.++|+ ++||.+.++
T Consensus        80 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~Gy~~~~~  148 (149)
T 2ew9_A           80 GNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIE-EIGFHASLA  148 (149)
T ss_dssp             SEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHH-HHTCEEECC
T ss_pred             ceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHH-hCCCceEec
Confidence            4678999 99999999999999999999999999999999999843   68899999999 999987654

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=99.18  E-value=9.2e-11  Score=82.88  Aligned_cols=68  Identities=18%  Similarity=0.327  Sum_probs=61.6

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEeccc
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      ..++.|.| ||+|.+|+.+|+++|.+++||.++.+|+.+++++|..   .+++++|.++|+ ++||.+.++..
T Consensus        73 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~Gy~~~~~~~  144 (151)
T 1p6t_A           73 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD-KLGYKLKLKGE  144 (151)
T ss_dssp             CEEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHH-HHTCCEEESCS
T ss_pred             ccccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHH-HcCCCeEEcCc
Confidence            45678999 9999999999999999999999999999999999983   468999999999 99999887654

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=99.16  E-value=1.7e-10  Score=88.29  Aligned_cols=70  Identities=19%  Similarity=0.382  Sum_probs=63.5

Q ss_pred             eEEEEEEcCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEecccCCC
Q 031710           27 QTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPY   97 (154)
Q Consensus        27 ~~~~l~Vgm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~~~~p~   97 (154)
                      .+++|+|.|+|.+|+.+|+++|++++||.++++|+.+++++|.+.+++++|.++|+ ++||++.++...+.
T Consensus         6 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~-~~Gy~a~~~~~~~~   75 (222)
T 1qup_A            6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLR-NCGKDAIIRGAGKP   75 (222)
T ss_dssp             EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHH-HTTCCCEEECCSCT
T ss_pred             eEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHH-HcCCccccccCCCc
Confidence            34578888999999999999999999999999999999999998889999999999 99999988876443

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A

Probab=99.10  E-value=1.9e-10  Score=71.26  Aligned_cols=58  Identities=26%  Similarity=0.493  Sum_probs=51.0

Q ss_pred             EEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceE
Q 031710           28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAE   90 (154)
Q Consensus        28 ~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~   90 (154)
                      +..|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|....+    .+.|+ ++||.+.
T Consensus         4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~-~~Gy~~~   62 (71)
T 2aj0_A            4 KTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVE-QAGAFEH   62 (71)
T ss_dssp             EEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC----HHHHH-HHHTTTT
T ss_pred             EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc----HHHHH-HhCCCcc
Confidence            567999 9999999999999999999999999999999999987654    45777 8998643

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=99.09  E-value=5.4e-10  Score=83.29  Aligned_cols=67  Identities=19%  Similarity=0.406  Sum_probs=60.0

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEeccc
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      .++.|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|..   .++.++|.+.|+ ++||.+.++..
T Consensus       122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~Gy~~~~~~~  192 (202)
T 2rop_A          122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIE-DMGFEASVVSE  192 (202)
T ss_dssp             EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHTSCEEEC--
T ss_pred             eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHH-HcCCceEEcCC
Confidence            5678999 9999999999999999999999999999999999974   368899999999 99999888764

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=99.06  E-value=6.2e-10  Score=86.58  Aligned_cols=70  Identities=19%  Similarity=0.382  Sum_probs=63.2

Q ss_pred             eEEEEEEcCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEecccCCC
Q 031710           27 QTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPY   97 (154)
Q Consensus        27 ~~~~l~Vgm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~~~~p~   97 (154)
                      .+++|+|.|+|.+|+.+|+++|++++||.++++|+.+++++|.+.+++++|.++|+ ++||.+.++...+.
T Consensus         7 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~~~~~~   76 (249)
T 1jk9_B            7 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLR-NCGKDAIIRGAGKP   76 (249)
T ss_dssp             EEEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHH-TTTCCCEEEEESST
T ss_pred             eeEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHH-HhCCCcccccCCcc
Confidence            34578888999999999999999999999999999999999998889999999999 99999988776443

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=99.04  E-value=1e-09  Score=77.06  Aligned_cols=67  Identities=21%  Similarity=0.336  Sum_probs=60.2

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEecc
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      |++++|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|..   ..+.+.+.+.|+ ++||.+.+..
T Consensus         3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~~~~~~~   73 (149)
T 2ew9_A            3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQ-DLGFEAAVME   73 (149)
T ss_dssp             CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHTCEEEECS
T ss_pred             cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHh-cCCCceEeec
Confidence            67889999 9999999999999999999999999999999999874   357889999999 9999887643

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=98.77  E-value=1.6e-08  Score=75.20  Aligned_cols=65  Identities=15%  Similarity=0.346  Sum_probs=55.9

Q ss_pred             CceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec---CCHHHHHHHHHHhh---CCceE
Q 031710           25 QLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY---VEPSKVVSRIAHRT---GKKAE   90 (154)
Q Consensus        25 ~~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~---~~~~~v~~~i~~~~---G~~a~   90 (154)
                      .+.++.|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|...   ++.+.|.+.|+ ++   ||.+.
T Consensus        18 ~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~~~gg~~v~   89 (202)
T 2rop_A           18 HVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIE-ALPPGNFKVS   89 (202)
T ss_dssp             --CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHT-TSSSSCSEEE
T ss_pred             ccEEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HhccCCeEEE
Confidence            466788999 99999999999999999999999999999999999742   67889999998 88   36554

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=98.76  E-value=4.2e-08  Score=69.00  Aligned_cols=63  Identities=17%  Similarity=0.451  Sum_probs=55.7

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCce
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKA   89 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a   89 (154)
                      +.+..|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|..   ..+...+.+.|+ ++||.+
T Consensus         5 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~~~   71 (151)
T 1p6t_A            5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE-KLGYHV   71 (151)
T ss_dssp             CEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHH-HHTCEE
T ss_pred             ceEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHH-HcCCcc
Confidence            45567999 9999999999999999999999999999999998863   357888999998 999865

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=98.68  E-value=4.5e-08  Score=86.07  Aligned_cols=64  Identities=19%  Similarity=0.269  Sum_probs=57.9

Q ss_pred             EEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEec
Q 031710           28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        28 ~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      +++|+| ||+|++|+.+|+++|++++||.++++|+.+++++|..   .++.+++.++|+ +.||++...
T Consensus         3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~-~~Gy~~~~~   70 (723)
T 3j09_A            3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIE-DLGYGVVDE   70 (723)
T ss_dssp             CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHCCEESSC
T ss_pred             eEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHH-hcCCccccc
Confidence            357999 9999999999999999999999999999999999973   368999999999 999987543

>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1

Probab=92.17  E-value=0.61  Score=30.68  Aligned_cols=67  Identities=10%  Similarity=0.199  Sum_probs=47.9

Q ss_pred             CceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEE-----eCCCcEEE--EEec-CCHHHHHHHHHHhhCCceEecc
Q 031710           25 QLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDV-----ERKANKVT--VVGY-VEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        25 ~~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~v-----d~~~~~v~--V~g~-~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      .++++.|.| .-+-+. .-.+-++|.+++||..|++     |..+..+.  |.|. ++.++|.++|+ +.|-.+.-+.
T Consensus         5 ~iRRlVLDVlKPh~P~-ivdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE-~~GgvIHSID   80 (100)
T 3bpd_A            5 GLRRLVLDVLKPHEPK-TIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIE-DMGGVIHSVD   80 (100)
T ss_dssp             SEEEEEEEEEEESCSC-HHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHH-TTTCEEEEEE
T ss_pred             cceEEEEEecCCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHH-HcCCeEEeee
Confidence            356777877 444433 4567788999999987754     44555444  4565 89999999999 9997766555

>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1

Probab=90.57  E-value=1.6  Score=28.58  Aligned_cols=67  Identities=12%  Similarity=0.241  Sum_probs=47.8

Q ss_pred             CceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEE-----eCCCcEEEE--Eec-CCHHHHHHHHHHhhCCceEecc
Q 031710           25 QLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDV-----ERKANKVTV--VGY-VEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        25 ~~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~v-----d~~~~~v~V--~g~-~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      .++++.|.| .-+-+. .-.+-++|.+++||..|++     |..+..+.|  .|. ++.++|.++|+ +.|-.+.-+.
T Consensus         5 ~irRlVLDVlKPh~p~-i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE-~~Gg~IHSID   80 (97)
T 2raq_A            5 GLIRIVLDILKPHEPI-IPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIE-SYGGSIHSVD   80 (97)
T ss_dssp             SEEEEEEEEECCSCSC-HHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHH-HTTCEEEEEE
T ss_pred             CceEEEEEecCCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHH-HcCCeEEeee
Confidence            466778888 554443 4567788899999887654     455555444  565 89999999999 9997766554

>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}

Probab=87.09  E-value=2.1  Score=27.93  Aligned_cols=66  Identities=11%  Similarity=0.221  Sum_probs=46.2

Q ss_pred             ceEEEEEE-c-CCCHhHHHHHHHHHhCCCCceEEEE-----eCCCcEEE--EEec-CCHHHHHHHHHHhhCCceEecc
Q 031710           26 LQTVEVKV-R-IDCEGCERKVKRAVEGMKGVKQVDV-----ERKANKVT--VVGY-VEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        26 ~~~~~l~V-g-m~C~~C~~kI~kal~~~~GV~~v~v-----d~~~~~v~--V~g~-~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      ++++.|.| . ++-+. .-.+-++|.+++||..|++     |..+..+.  |.|. ++.++|.++|+ +.|-.+.-+.
T Consensus         4 irRlVLDVlKP~h~P~-ivd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE-~~Gg~IHSID   79 (96)
T 2x3d_A            4 IRRLVLDVLKPIRGTS-IVDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLE-EEGCAIHSID   79 (96)
T ss_dssp             EEEEEEEEEEESSSSC-HHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHH-HTTCEEEEEE
T ss_pred             eEEEEEEcccCCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHH-HcCCeEEeee
Confidence            45566776 3 34444 4567788999999987754     44555444  4565 89999999999 9997665554

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=86.62  E-value=1  Score=29.47  Aligned_cols=35  Identities=29%  Similarity=0.583  Sum_probs=27.6

Q ss_pred             EEEEEEcCCCHhH------HHHHHHHHhCCCCceEEEEeCC
Q 031710           28 TVEVKVRIDCEGC------ERKVKRAVEGMKGVKQVDVERK   62 (154)
Q Consensus        28 ~~~l~Vgm~C~~C------~~kI~kal~~~~GV~~v~vd~~   62 (154)
                      .+.+.+-+++++|      ...|+.+|.+++||.+|+|++.
T Consensus        42 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~   82 (103)
T 3cq1_A           42 RAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT   82 (103)
T ss_dssp             EEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred             EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEe
Confidence            4566677777777      5678999999999999888653

>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A

Probab=84.16  E-value=4.2  Score=25.31  Aligned_cols=54  Identities=7%  Similarity=0.074  Sum_probs=39.7

Q ss_pred             EEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEE--ecCCHHHHHHHHHHhhCCceEec
Q 031710           29 VEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV--GYVEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        29 ~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~--g~~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      .++.+ |+.|+.-..+++++|.+++.-+         .+.|.  .......|.+.++ +.|+.+...
T Consensus        11 ~~lD~rGl~CP~Pvl~~kkal~~l~~G~---------~l~V~~dd~~a~~di~~~~~-~~G~~~~~~   67 (82)
T 3lvj_C           11 HTLDALGLRCPEPVMMVRKTVRNMQPGE---------TLLIIADDPATTRDIPGFCT-FMEHELVAK   67 (82)
T ss_dssp             EEEECTTCCTTHHHHHHHHHHHTSCTTC---------EEEEEECCTTHHHHHHHHHH-HTTCEEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHHHHhCCCCC---------EEEEEECCccHHHHHHHHHH-HCCCEEEEE
Confidence            56888 9999999999999999884212         22332  2245678888888 999987654

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=83.82  E-value=1.6  Score=28.47  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=25.9

Q ss_pred             EEEEEEcCCCHhH------HHHHHHHHhCCCCceEEEEeCC
Q 031710           28 TVEVKVRIDCEGC------ERKVKRAVEGMKGVKQVDVERK   62 (154)
Q Consensus        28 ~~~l~Vgm~C~~C------~~kI~kal~~~~GV~~v~vd~~   62 (154)
                      .+.+.+-++.++|      ...|+.+|.+++||.+|+|++.
T Consensus        43 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~   83 (103)
T 1uwd_A           43 NVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT   83 (103)
T ss_dssp             EEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence            4556666666666      4568999999999999887643

>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A

Probab=82.47  E-value=6  Score=25.57  Aligned_cols=44  Identities=9%  Similarity=0.184  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHhCCCCceEEEEeCCCcEEEEE-ecCCHHHHHHHHH
Q 031710           39 GCERKVKRAVEGMKGVKQVDVERKANKVTVV-GYVEPSKVVSRIA   82 (154)
Q Consensus        39 ~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~-g~~~~~~v~~~i~   82 (154)
                      +=...|.++|.+++||+-..++...+++.|+ ...+.+++.+.|+
T Consensus        17 ~~~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~   61 (95)
T 2jsx_A           17 ERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIE   61 (95)
T ss_dssp             TSHHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHH
Confidence            4478899999999999544456667888876 3346666666665

>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3

Probab=82.03  E-value=4.8  Score=26.11  Aligned_cols=55  Identities=16%  Similarity=0.152  Sum_probs=40.6

Q ss_pred             EEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe--cCCHHHHHHHHHHhhCCceEecc
Q 031710           29 VEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG--YVEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        29 ~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g--~~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      .+|.+ |+.|+.-..+++++|.+++.-+         .+.|..  ......|.+.++ +.|+.+....
T Consensus        27 ~~LD~rGl~CP~Pvl~tkkaL~~l~~Ge---------~L~Vl~dd~~a~~dI~~~~~-~~G~~v~~~e   84 (98)
T 1jdq_A           27 KTLDVRGEVCPVPDVETKRALQNMKPGE---------ILEVWIDYPMSKERIPETVK-KLGHEVLEIE   84 (98)
T ss_dssp             EEEECSSCCSSHHHHHHHHHHHTCCTTC---------EEEEEESSCTHHHHHHHHHH-HSSCCEEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHhCCCCC---------EEEEEECCccHHHHHHHHHH-HCCCEEEEEE
Confidence            56899 9999999999999999974322         233332  235688888898 9999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d1qupa2	72	d.58.17.1 (A:2-73) Copper chaperone for superoxide	2e-11
d1cc8a_	72	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	5e-11
d1fe0a_	66	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	1e-09
d1osda_	72	d.58.17.1 (A:) Mercuric ion binding protein MerP {	1e-08
d1sb6a_	64	d.58.17.1 (A:) Copper chaperone {Synechocystis sp.	1e-07
d1kvja_	79	d.58.17.1 (A:) Menkes copper-transporting ATPase {	5e-07
d2ggpb1	72	d.58.17.1 (B:1-72) Copper transporter domain ccc2a	7e-07
d1p6ta2	79	d.58.17.1 (A:73-151) Potential copper-translocatin	1e-06
d1p6ta1	72	d.58.17.1 (A:1-72) Potential copper-translocating	2e-06
d1cpza_	68	d.58.17.1 (A:) Copper chaperone {Enterococcus hira	3e-06
d2aw0a_	72	d.58.17.1 (A:) Menkes copper-transporting ATPase {	3e-06
d1mwza_	73	d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,	7e-06
d2qifa1	69	d.58.17.1 (A:1-69) Copper chaperone {Bacillus subt	1e-05
d1q8la_	84	d.58.17.1 (A:) Menkes copper-transporting ATPase {	1e-04

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (131), Expect = 2e-11
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 28 TVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGK 87
               + + CE C   +K  ++ + G+  ++ + +   ++V   V PS +++ +    GK
Sbjct: 7  EATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLR-NCGK 65

Query: 88 KAEIW 92
           A I 
Sbjct: 66 DAIIR 70

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.2 bits (128), Expect = 5e-11
 Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 25 QLQTVEVKVRIDCEGCERKVKRAVEGMK-GVKQVDVERKANKVTVVGYVEPSKVVSRIAH 83
          +++  +  V + C GC   V + +  ++  V ++D+  +   V V   +    ++ +I  
Sbjct: 2  EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIK- 60

Query: 84 RTGKKA 89
          +TGK+ 
Sbjct: 61 KTGKEV 66

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Length = 66

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 1e-09
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 29 VEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKK 88
           E  V + C GC   V R +  + G  + D++    KV +        +++ +  +TGK 
Sbjct: 3  HEFSVDMTCGGCAEAVSRVLNKLGG-VKYDIDLPNKKVCIESEHSMDTLLATLK-KTGKT 60

Query: 89 AEIW 92
              
Sbjct: 61 VSYL 64

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

 Score = 47.0 bits (112), Expect = 1e-08
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 27 QTVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV---GYVEPSKVVSRIA 82
          QTV + V  + C  C   VK+A+  ++GV +VDV  +  +  V          K+    A
Sbjct: 3  QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATA 62

Query: 83 HRTGKKAEI 91
             G  + +
Sbjct: 63 -DAGYPSSV 70

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 28 TVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTG 86
          T+++ V  I CE C   V +AV+       V V+  + KVT+   +   ++ + IA   G
Sbjct: 2  TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIA-SAG 60

Query: 87 KKAE 90
           + E
Sbjct: 61 HEVE 64

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 5e-07
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 26 LQTVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV---GYVEPSKVVSRI 81
          + +V + V  + C  C   +++ +  + GV  + V  +    T++       P  +   I
Sbjct: 7  VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 66

Query: 82 AHRTGKKAEI 91
              G  A I
Sbjct: 67 D-DMGFDAVI 75

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.4 bits (100), Expect = 7e-07
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 27 QTVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV--GYVEPSKVVSRIAH 83
          + V + V  + C  C   +   +  +KGV + D+    N+  V     V    +   I  
Sbjct: 2  REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIE- 60

Query: 84 RTGKKAEIW 92
            G   EI 
Sbjct: 61 DCGFDCEIL 69

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.8 bits (98), Expect = 1e-06
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 27 QTVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV---GYVEPSKVVSRIA 82
          +  E  +  + C  C  ++++ +  ++GV    V      VTV         S +   + 
Sbjct: 2  EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD 61

Query: 83 HRTGKKAEI 91
           + G K ++
Sbjct: 62 -KLGYKLKL 69

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.9 bits (96), Expect = 2e-06
 Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 25 QLQTVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV---GYVEPSKVVSR 80
          + + + ++V  + C  C  ++++ ++ M GV   +V      V V+        + +  +
Sbjct: 4  EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEK 63

Query: 81 IA 82
          I 
Sbjct: 64 IE 65

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Length = 68

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

 Score = 40.5 bits (95), Expect = 3e-06
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 35 IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV---GYVEPSKVVSRIAHRTGKKAEI 91
          + C  C  +++ AV  + GVK+V V+ K  K  V      V+ +++   I    G +AE+
Sbjct: 9  MSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAIN-ELGYQAEV 67

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 3e-06
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 27 QTVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV---GYVEPSKVVSRIA 82
          Q   + +  + C  C + ++  +    GVK + V    +  TV        P  +   I 
Sbjct: 3  QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIE 62

Query: 83 HRTGKKAEI 91
             G  A +
Sbjct: 63 -DMGFDATL 70

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (93), Expect = 7e-06
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 27 QTVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRT 85
               KV  +DC  C RKV+ AV  + GV QV V     K+ V    +    V     + 
Sbjct: 3  TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKA 62

Query: 86 GKKAE 90
          G    
Sbjct: 63 GYSLR 67

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Length = 69

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

 Score = 39.0 bits (91), Expect = 1e-05
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 26 LQTVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV---GYVEPSKVVSRI 81
          ++   ++V  + C+ C + V+ +V  + GV  V V  +A KV V      V    +   I
Sbjct: 1  MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAI 60

Query: 82 A 82
           
Sbjct: 61 E 61

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 1e-04
 Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 27 QTVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDV---ERKANKVTVVGYVEPSKVVSRIA 82
            +++KV  + C  C   ++  +  ++GV+++ V    ++A  V     +   ++  +I 
Sbjct: 9  VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIE 68

Query: 83 HRTGKKAEI 91
             G  A +
Sbjct: 69 -AMGFPAFV 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1fe0a_	66	ATX1 metallochaperone protein (ATOX1) {Human (Homo	99.74
d1qupa2	72	Copper chaperone for superoxide dismutase, N-termi	99.72
d1cc8a_	72	ATX1 metallochaperone protein (ATOX1) {Baker's yea	99.72
d2ggpb1	72	Copper transporter domain ccc2a {Baker's yeast (Sa	99.66
d1sb6a_	64	Copper chaperone {Synechocystis sp. pcc 6803, Scat	99.66
d1osda_	72	Mercuric ion binding protein MerP {Ralstonia metal	99.65
d2qifa1	69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	99.64
d1cpza_	68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	99.63
d2aw0a_	72	Menkes copper-transporting ATPase {Human (Homo sap	99.62
d1kvja_	79	Menkes copper-transporting ATPase {Human (Homo sap	99.62
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	99.58
d1p6ta2	79	Potential copper-translocating P-type ATPase CopA	99.57
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	99.56
d1mwza_	73	Metal ion-transporting ATPase ZntA, N-terminal dom	99.56
d2raqa1	93	Uncharacterized protein MTH889 {Methanobacterium t	91.22
d3bpda1	91	Uncharacterized protein AF1549 {Archaeoglobus fulg	90.07
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	86.35
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	85.77
d1dcja_	81	SirA {Escherichia coli [TaxId: 562]}	84.87
d1jdqa_	98	Hypothetical protein TM0983 {Thermotoga maritima [	84.44
d1je3a_	97	hypothetical protein YedF (EC005) {Escherichia col	82.61

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

Probab=99.74  E-value=5.3e-18  Score=105.38  Aligned_cols=64  Identities=23%  Similarity=0.455  Sum_probs=61.0

Q ss_pred             EEEEEEcCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEecc
Q 031710           28 TVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        28 ~~~l~Vgm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      +++|+|+|+|.+|+.+|+++|++++|+ ++++|+.+++++|.++++++.|+++|+ ++||+++++.
T Consensus         2 k~ef~V~M~C~~C~~~I~~aL~~~~gv-~v~v~~~~~~v~V~~~~~~~~i~~~I~-~~Gy~a~lig   65 (66)
T d1fe0a_           2 KHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLK-KTGKTVSYLG   65 (66)
T ss_dssp             EEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHH-TTTSCEEEEE
T ss_pred             CEEEEEccCchHHHHHHHHHHhcCCCc-EEEEEcCCCEEEEEeeCCHHHHHHHHH-HhCCeEEEee
Confidence            468999999999999999999999998 699999999999999999999999999 9999999875

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.3e-17  Score=105.27  Aligned_cols=66  Identities=20%  Similarity=0.451  Sum_probs=62.7

Q ss_pred             eEEEEEEcCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEecc
Q 031710           27 QTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        27 ~~~~l~Vgm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      .+.+|.|+|+|++|+.+|+++|++++||.++.||+.+++++|.+.+++++|+++|+ ++||+|.++.
T Consensus         6 ~~~~f~V~M~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~~~~~~i~~~I~-~~G~~A~l~g   71 (72)
T d1qupa2           6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLR-NCGKDAIIRG   71 (72)
T ss_dssp             EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHH-HTTCCCEEEC
T ss_pred             EEEEEEEccCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEeeCCHHHHHHHHH-HhCCCEEEec
Confidence            45689999999999999999999999999999999999999999999999999999 9999999875

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.4e-17  Score=104.04  Aligned_cols=66  Identities=20%  Similarity=0.451  Sum_probs=62.5

Q ss_pred             CceEEEEEEcCCCHhHHHHHHHHHhCCC-CceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceEe
Q 031710           25 QLQTVEVKVRIDCEGCERKVKRAVEGMK-GVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEI   91 (154)
Q Consensus        25 ~~~~~~l~Vgm~C~~C~~kI~kal~~~~-GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~~   91 (154)
                      ++++++|+|+|+|.+|+.+|+++|.+++ ||.++++|+.+++++|.+.+++++|+++|+ ++||++.-
T Consensus         2 ~~kt~~f~V~MtC~~C~~~Ie~~L~~l~~gV~~v~v~~~~~~v~V~~~~~~~~i~~~i~-~~G~~~~~   68 (72)
T d1cc8a_           2 EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIK-KTGKEVRS   68 (72)
T ss_dssp             CCEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHH-TTSSCEEE
T ss_pred             CcEEEEEEECcCcHHHHHHHHHHHHcCcCceEEEEEECCCCEEEEeecCCHHHHHHHHH-HHCCccCC
Confidence            5789999999999999999999999995 999999999999999999999999999999 99998863

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=1.4e-16  Score=100.36  Aligned_cols=66  Identities=23%  Similarity=0.425  Sum_probs=61.7

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEE--ecCCHHHHHHHHHHhhCCceEecc
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV--GYVEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~--g~~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      +++.|+| ||+|++|+.+|+++|.+++||.+++||+.+++++|.  ..+++++|.++|+ ++||+++++.
T Consensus         2 k~v~l~V~GM~C~~C~~~Ie~~l~~~~gV~~v~V~~~~~~~~v~~~~~~~~~~i~~~i~-~~Gy~a~~~~   70 (72)
T d2ggpb1           2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIE-DCGFDCEILR   70 (72)
T ss_dssp             EEEEEECTTCCSSTTTHHHHHHHTTSTTEEEEEECTTTCEEEEEECSSCCHHHHHHHHH-HTTCCCEEEE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCHHHHHHHHH-HhCCCeEEcc
Confidence            4689999 999999999999999999999999999999999998  4489999999999 9999999875

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

Probab=99.66  E-value=6.3e-17  Score=99.77  Aligned_cols=62  Identities=29%  Similarity=0.521  Sum_probs=59.3

Q ss_pred             EEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEecCCHHHHHHHHHHhhCCceE
Q 031710           28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAE   90 (154)
Q Consensus        28 ~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~~~~~~v~~~i~~~~G~~a~   90 (154)
                      +++|.| ||+|++|+.+|+++|++++||.++.+|+.+++++|.+.+++++|.++|+ ++||+++
T Consensus         2 t~~l~V~gM~C~~C~~~Ie~~l~~~~gv~~v~v~~~~~~v~v~~~~~~~~i~~~i~-~~GY~ve   64 (64)
T d1sb6a_           2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIA-SAGHEVE   64 (64)
T ss_dssp             EEEEECTTTTSSSCTHHHHHHHHHHCTTCEEEEETTTTEEEEESSSCHHHHHHHHH-HHCCCCC
T ss_pred             eEEEEECCccchhHHHHHHHHHhcCCCeeEEEccCCCCEEEEccCCCHHHHHHHHH-HcCCCCC
Confidence            468999 9999999999999999999999999999999999999999999999999 9999875

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

Probab=99.65  E-value=4.3e-16  Score=98.07  Aligned_cols=66  Identities=27%  Similarity=0.440  Sum_probs=61.5

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEE---ecCCHHHHHHHHHHhhCCceEec
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV---GYVEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~---g~~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      .++++|+| ||+|.+|+.+|+++|++++||.+++||+.+++++|+   +.+++++|.++|+ ++||+++++
T Consensus         2 tqt~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~Gy~a~v~   71 (72)
T d1osda_           2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATA-DAGYPSSVK   71 (72)
T ss_dssp             EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHH-HTTCCCEEC
T ss_pred             CeEEEEEECCcccHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHH-hcCCCeEeC
Confidence            36789999 999999999999999999999999999999999998   3478999999999 999999876

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

Probab=99.64  E-value=7.3e-16  Score=96.20  Aligned_cols=63  Identities=25%  Similarity=0.432  Sum_probs=59.2

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCce
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKA   89 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a   89 (154)
                      |++.+|+| ||+|++|+.+|+++|++++||.++++|+.+++++|..   .++.++|.+.|+ ++||++
T Consensus         1 M~~~tl~V~Gm~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~-~~Gy~~   67 (69)
T d2qifa1           1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIE-DQGYDV   67 (69)
T ss_dssp             CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HTTCEE
T ss_pred             CcEEEEEECCccCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHH-HhCCcc
Confidence            67889999 9999999999999999999999999999999999983   379999999999 999986

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

Probab=99.63  E-value=5.8e-16  Score=96.43  Aligned_cols=62  Identities=31%  Similarity=0.505  Sum_probs=58.1

Q ss_pred             EEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEec
Q 031710           30 EVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        30 ~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      +|+| ||+|++|+.+|+++|++++||.+++||+.+++++|+.   .+++++|.++|+ ++||+++++
T Consensus         3 el~V~GM~C~~C~~~Ie~~l~~~~GV~~v~V~~~~~~v~v~~d~~~~~~~~i~~~i~-~~Gy~a~vi   68 (68)
T d1cpza_           3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAIN-ELGYQAEVI   68 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-TTSSCEEEC
T ss_pred             EEEECCeEcHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHH-hhCCCcEEC
Confidence            6899 9999999999999999999999999999999999983   479999999999 999999874

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-15  Score=95.97  Aligned_cols=65  Identities=20%  Similarity=0.353  Sum_probs=60.2

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEec
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      ++..|+| ||+|++|+.+|+++|.+++||.+++||+.+++++|..   .+++++|.++|+ ++||++.+.
T Consensus         3 ~~~~l~V~GM~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~-~~Gy~a~l~   71 (72)
T d2aw0a_           3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIE-DMGFDATLS   71 (72)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHTSEEEEC
T ss_pred             EEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHH-hhCCCcEeC
Confidence            5678999 9999999999999999999999999999999999983   479999999999 999998764

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.7e-15  Score=96.86  Aligned_cols=71  Identities=18%  Similarity=0.374  Sum_probs=65.0

Q ss_pred             cCCceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEeccc
Q 031710           23 RRQLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        23 ~~~~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      ...+.+++|.| ||+|.+|+.+|+++|++++||.+++||+.+++++|..   .+++++|.++|+ ++||++.+..+
T Consensus         4 ~~~~~~~~l~V~gm~C~~C~~~ie~~l~~~~gv~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~-~~GY~~~~~~~   78 (79)
T d1kvja_           4 SMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID-DMGFDAVIHNP   78 (79)
T ss_dssp             STTCEEEEEEEESCCSTHHHHHHHHHHHTTTTCSEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHTCEEEECSC
T ss_pred             CCCceEEEEEECCeecHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHH-hcCCCcEeCCC
Confidence            35688999999 9999999999999999999999999999999999983   379999999999 99999987653

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.58  E-value=3.8e-15  Score=93.57  Aligned_cols=63  Identities=17%  Similarity=0.475  Sum_probs=58.7

Q ss_pred             ceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEE---ecCCHHHHHHHHHHhhCCce
Q 031710           26 LQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV---GYVEPSKVVSRIAHRTGKKA   89 (154)
Q Consensus        26 ~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~---g~~~~~~v~~~i~~~~G~~a   89 (154)
                      .++++|+| ||+|++|+.+|+++|.+++||.++.+|+.+++++|+   +.++.++|.++|+ ++||++
T Consensus         5 ~~~~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~-~~Gy~v   71 (72)
T d1p6ta1           5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE-KLGYHV   71 (72)
T ss_dssp             CEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHH-HHTCEE
T ss_pred             ceEEEEEECCeecHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHH-HhCCcc
Confidence            46789999 999999999999999999999999999999999997   4578999999999 999975

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.57  E-value=5.2e-15  Score=94.60  Aligned_cols=67  Identities=18%  Similarity=0.338  Sum_probs=62.1

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEe---cCCHHHHHHHHHHhhCCceEeccc
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG---YVEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g---~~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      ++++|.| ||+|++|+.+|+++|..++||.++.||+.+++++|..   .++.++|.++|+ ++||++.+++.
T Consensus         2 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~Gy~~~~~~~   72 (79)
T d1p6ta2           2 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD-KLGYKLKLKGE   72 (79)
T ss_dssp             EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHH-HHTCCEEESCS
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCCCHHHHHHHHH-HHCCceEECCc
Confidence            4678999 9999999999999999999999999999999999983   479999999999 99999988765

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.7e-15  Score=95.52  Aligned_cols=70  Identities=17%  Similarity=0.346  Sum_probs=63.6

Q ss_pred             CCceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEE---ecCCHHHHHHHHHHhhCCceEeccc
Q 031710           24 RQLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV---GYVEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        24 ~~~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~---g~~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      .....++|+| ||+|.+|+.+|+++|++++||.+++||+.+++++|.   ..++.+.|.++|+ ++||++.+...
T Consensus         6 ~~~~~v~l~V~GMtC~~C~~~Ie~~l~~~~GV~~v~vn~~~~~v~v~~~~~~~~~~~i~~~I~-~~Gy~a~~~~~   79 (84)
T d1q8la_           6 AGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIE-AMGFPAFVKKQ   79 (84)
T ss_dssp             SSCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHH-HTTCCEECSCC
T ss_pred             CCCEEEEEEECCeEcHHHHHHHHHHHhcCCCceEEEEECCCCEEceeecccccCHHHHHHHHH-HhCCccEEcCC
Confidence            3456788999 999999999999999999999999999999999998   3478999999999 99999988764

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=7.6e-15  Score=92.45  Aligned_cols=65  Identities=31%  Similarity=0.377  Sum_probs=58.8

Q ss_pred             eEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEEec-CCHHHHHHHHHHhhCCceEec
Q 031710           27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGY-VEPSKVVSRIAHRTGKKAEIW   92 (154)
Q Consensus        27 ~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~g~-~~~~~v~~~i~~~~G~~a~~~   92 (154)
                      ++++|.| ||+|++|+.+|+++|.+++||.+++||+.+++++|... ...++|.++|+ ++||.++..
T Consensus         3 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~i~~~i~-~~GY~v~~~   69 (73)
T d1mwza_           3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQ-KAGYSLRDE   69 (73)
T ss_dssp             CCEEEECTTCCSHHHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHH-HHTCCCCBC
T ss_pred             CEEEEEECCcCCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCHHHHHHHHH-HcCCcccCC
Confidence            4578999 99999999999999999999999999999999999854 45789999999 999987654

>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein MTH889
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.22  E-value=0.9  Score=27.97  Aligned_cols=68  Identities=12%  Similarity=0.241  Sum_probs=49.2

Q ss_pred             CceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEE-----eCCCcEEEE--Eec-CCHHHHHHHHHHhhCCceEeccc
Q 031710           25 QLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDV-----ERKANKVTV--VGY-VEPSKVVSRIAHRTGKKAEIWPY   94 (154)
Q Consensus        25 ~~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~v-----d~~~~~v~V--~g~-~~~~~v~~~i~~~~G~~a~~~~~   94 (154)
                      .++++.|.| .-+-+ -...+-+.|.+++||..|++     |..+..+.|  .|. ++-++|.+.|+ +.|-.+.-+..
T Consensus         3 ~iRRlVLDVlKPh~P-~i~e~A~~l~~~~gV~~VnitV~EiD~et~~i~itiEG~~idyd~i~~~IE-~~Gg~IHSIDe   79 (93)
T d2raqa1           3 GLIRIVLDILKPHEP-IIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIE-SYGGSIHSVDE   79 (93)
T ss_dssp             SEEEEEEEEECCSCS-CHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHH-HTTCEEEEEEE
T ss_pred             ceEEEEEEeecCCCC-CHHHHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHH-HcCCeEEEEee
Confidence            456778888 55554 56678888999999887654     455555444  465 89999999999 99976655443

>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein AF1549
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.07  E-value=0.98  Score=27.70  Aligned_cols=67  Identities=10%  Similarity=0.199  Sum_probs=47.1

Q ss_pred             CceEEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEE-----eCCCcEEE--EEec-CCHHHHHHHHHHhhCCceEecc
Q 031710           25 QLQTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDV-----ERKANKVT--VVGY-VEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        25 ~~~~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~v-----d~~~~~v~--V~g~-~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      .++++.|.| .-+-+. ...+-+.|.+++||..|.+     |..+..+.  |.|. ++-++|.+.|+ +.|-.+.-+.
T Consensus         3 ~irRlVLDVlKPh~p~-~~~~A~~l~~~~gV~~VnitV~EiD~~t~~i~ItiEG~~idyd~i~~~IE-~~Gg~IHSID   78 (91)
T d3bpda1           3 GLRRLVLDVLKPHEPK-TIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIE-DMGGVIHSVD   78 (91)
T ss_dssp             SEEEEEEEEEEESCSC-HHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHH-TTTCEEEEEE
T ss_pred             ceeEEEEEeecCCCCC-HHHHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHH-HcCCeEEEEh
Confidence            356677887 445444 3447888999999987754     44555444  4465 89999999999 9997665543

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=86.35  E-value=0.45  Score=29.10  Aligned_cols=35  Identities=29%  Similarity=0.583  Sum_probs=26.3

Q ss_pred             EEEEEEcCCCHhH------HHHHHHHHhCCCCceEEEEeCC
Q 031710           28 TVEVKVRIDCEGC------ERKVKRAVEGMKGVKQVDVERK   62 (154)
Q Consensus        28 ~~~l~Vgm~C~~C------~~kI~kal~~~~GV~~v~vd~~   62 (154)
                      .+.+.+-++..+|      ...|+++|++++||.+|+|++.
T Consensus        37 ~v~v~l~lt~~~cp~~~~i~~~i~~al~~l~gv~~V~V~~~   77 (91)
T d2cu6a1          37 RAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT   77 (91)
T ss_dssp             EEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred             ccEEEEEcCCCCCcHHHHHHHHHHHHHHcCCCCceEEEEEE
Confidence            3455555555555      7788999999999999988753

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=85.77  E-value=0.46  Score=29.77  Aligned_cols=34  Identities=26%  Similarity=0.470  Sum_probs=24.4

Q ss_pred             EEEEEcCCCHhH------HHHHHHHHhCCCCceEEEEeCC
Q 031710           29 VEVKVRIDCEGC------ERKVKRAVEGMKGVKQVDVERK   62 (154)
Q Consensus        29 ~~l~Vgm~C~~C------~~kI~kal~~~~GV~~v~vd~~   62 (154)
                      +.+.+-++..+|      ...|+++|.+++||.+|+|++.
T Consensus        43 V~v~~~lt~~~Cp~~~~i~~~i~~al~~~~gV~~v~V~i~   82 (102)
T d1uwda_          43 VKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT   82 (102)
T ss_dssp             EEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             eEEEEecCCCCCchHHHHHHHHHHHHHcCCCCceEEEEEE
Confidence            444444554444      5677999999999999988654

>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: SirA
species: Escherichia coli [TaxId: 562]

Probab=84.87  E-value=0.93  Score=26.78  Aligned_cols=56  Identities=7%  Similarity=0.068  Sum_probs=41.0

Q ss_pred             EEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEE--ecCCHHHHHHHHHHhhCCceEecc
Q 031710           28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV--GYVEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        28 ~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~--g~~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      ..+|.+ |+.|+.-..+++++|.+++.-+         .+.|.  .......|...++ +.|+.+..+.
T Consensus         9 ~~~lD~~G~~CP~P~l~~k~al~~~~~G~---------~l~v~~dd~~a~~di~~~~~-~~g~~~~~~~   67 (81)
T d1dcja_           9 DHTLDALGLRCPEPVMMVRKTVRNMQPGE---------TLLIIADDPATTRDIPGFCT-FMEHELVAKE   67 (81)
T ss_dssp             SEEECCTTCCTTHHHHHHHHHHHHCCTTC---------CEEEEECSTTHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CeEEECCCCCCCHHHHHHHHHHHhCCCCC---------EEEEEeCCCcHHHHHHHHHH-HcCCEEEEEE
Confidence            357888 9999999999999999884322         22332  2246778888888 9998875443

>d1jdqa_ d.68.3.3 (A:) Hypothetical protein TM0983 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: Hypothetical protein TM0983
species: Thermotoga maritima [TaxId: 2336]

Probab=84.44  E-value=1.4  Score=27.19  Aligned_cols=52  Identities=17%  Similarity=0.196  Sum_probs=39.3

Q ss_pred             EEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEE--ecCCHHHHHHHHHHhhCCceE
Q 031710           29 VEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV--GYVEPSKVVSRIAHRTGKKAE   90 (154)
Q Consensus        29 ~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~--g~~~~~~v~~~i~~~~G~~a~   90 (154)
                      .+|.+ |+.|+....+++++|.+++.-+         .+.|.  .....+.|.+.++ +.|+.+.
T Consensus        27 ~~LD~rG~~CP~Pll~~kkal~~l~~Ge---------~L~V~~dd~~a~~dI~~~~~-~~g~~i~   81 (98)
T d1jdqa_          27 KTLDVRGEVCPVPDVETKRALQNMKPGE---------ILEVWIDYPMSKERIPETVK-KLGHEVL   81 (98)
T ss_dssp             EEEECSSCCSSHHHHHHHHHHHTCCTTC---------EEEEEESSCTHHHHHHHHHH-HSSCCEE
T ss_pred             eeEECCCCcCCHHHHHHHHHHHcCCCCC---------EEEEEeCCcchHHHHHHHHH-HcCCEEE
Confidence            46899 9999999999999999985322         23333  2245678888998 9999863

>d1je3a_ d.68.3.3 (A:) hypothetical protein YedF (EC005) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: hypothetical protein YedF (EC005)
species: Escherichia coli [TaxId: 562]

Probab=82.61  E-value=1.2  Score=27.44  Aligned_cols=56  Identities=11%  Similarity=-0.018  Sum_probs=40.8

Q ss_pred             EEEEEE-cCCCHhHHHHHHHHHhCCCCceEEEEeCCCcEEEEE--ecCCHHHHHHHHHHhhCCceEecc
Q 031710           28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV--GYVEPSKVVSRIAHRTGKKAEIWP   93 (154)
Q Consensus        28 ~~~l~V-gm~C~~C~~kI~kal~~~~GV~~v~vd~~~~~v~V~--g~~~~~~v~~~i~~~~G~~a~~~~   93 (154)
                      ..+|.+ |+.|+.-..+++++|.+++--+         .+.|.  .......|...++ +.|+++....
T Consensus        27 d~~LD~~G~~CP~Pll~~k~~l~~l~~Ge---------~L~V~~dd~~a~~di~~~~~-~~g~~v~~~~   85 (97)
T d1je3a_          27 DYRLDMVGEPCPYPAVATLEAMPQLKKGE---------ILEVVSDCPQSINNIPLDAR-NHGYTVLDIQ   85 (97)
T ss_dssp             EEEECSBCCSSSSSTHHHHHHTTTCCSSC---------EEEEEEBCSSSSCHHHHHHH-HHTCSEEEEE
T ss_pred             ceEEeCCCCcCCHHHHHHHHHHHcCCCCC---------EEEEEeCCccHHHHHHHHHH-HcCCEEEEEE
Confidence            357888 9999999999999999884322         22332  2245678889998 9999875443