Citrus Sinensis ID: 031718

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
MNKSSGISLLLGGAGPHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
ccccccHHHHHHHcccccccccEEEEEccccccccEEEcEEEEEccccccccccccccccccEEcccccccccEEccccHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHc
cccccHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEccccccccccccccccccEEcccccccccEEccccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHHHHc
mnkssgislllggagphrlapqceihvgvnsgsskFALERRAVneatflcpdqlgwqpqqipvvledggisrsrqtslSTEAILKFLKKKgfdvvisddagrFVCNYVYYHSLRFaeqkghkslfvhvplfstidedTQMQFVATLFEAVASTC
MNKSSGISLLLGGAGPHRLAPQCEIHVGVNSGSSKFALERRAVNEATFlcpdqlgwqpQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
MNKssgislllggAGPHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
********LLLGGAGPHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGIS*****SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAV****
*****GI**LLGGAGPHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTI******QFVATLFEAVASTC
MNKSSGISLLLGGAGPHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
*****GISLLLGGAGPHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNKSSGISLLLGGAGPHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query154 2.2.26 [Sep-21-2011]
O73944208 Pyrrolidone-carboxylate p yes no 0.714 0.528 0.347 1e-12
B5XZE0214 Pyrrolidone-carboxylate p yes no 0.714 0.514 0.359 1e-11
O58321206 Pyrrolidone-carboxylate p yes no 0.688 0.514 0.342 4e-11
A5CM68213 Pyrrolidone-carboxylate p yes no 0.694 0.502 0.362 4e-11
B7JDC3215 Pyrrolidone-carboxylate p yes no 0.714 0.511 0.350 6e-11
A7N3R7212 Pyrrolidone-carboxylate p yes no 0.727 0.528 0.356 1e-10
B1IB28214 Pyrrolidone-carboxylate p yes no 0.707 0.509 0.315 1e-10
Q04L55214 Pyrrolidone-carboxylate p yes no 0.707 0.509 0.315 1e-10
P65679214 Pyrrolidone-carboxylate p yes no 0.707 0.509 0.315 1e-10
P65678214 Pyrrolidone-carboxylate p yes no 0.707 0.509 0.315 1e-10
>sp|O73944|PCP_PYRFU Pyrrolidone-carboxylate peptidase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pcp PE=1 SV=1 Back     alignment and function desciption
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 5/115 (4%)

Query: 17  HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
             + P   IHVG+  G S  ++ER AVN      PD  G + +  P+V    G   +  +
Sbjct: 57  EEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIV---PGAPTAYFS 113

Query: 77  SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 129
           +L  + I+K L ++G    IS+ AG ++CNYV Y SL  +  KG+  +  F+HVP
Sbjct: 114 TLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPKMSGFIHVP 168
Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 3
>sp|B5XZE0|PCP_KLEP3 Pyrrolidone-carboxylate peptidase OS=Klebsiella pneumoniae (strain 342) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|O58321|PCP_PYRHO Pyrrolidone-carboxylate peptidase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pcp PE=1 SV=1 Back     alignment and function description
>sp|A5CM68|PCP_CLAM3 Pyrrolidone-carboxylate peptidase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|B7JDC3|PCP_BACC0 Pyrrolidone-carboxylate peptidase OS=Bacillus cereus (strain AH820) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|A7N3R7|PCP_VIBHB Pyrrolidone-carboxylate peptidase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|B1IB28|PCP_STRPI Pyrrolidone-carboxylate peptidase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|Q04L55|PCP_STRP2 Pyrrolidone-carboxylate peptidase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|P65679|PCP1_STRR6 Pyrrolidone-carboxylate peptidase 1 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pcp1 PE=3 SV=1 Back     alignment and function description
>sp|P65678|PCP1_STRPN Pyrrolidone-carboxylate peptidase 1 OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pcp1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query154
42562269217 Peptidase C15, pyroglutamyl peptidase I- 0.844 0.599 0.776 4e-58
225425579217 PREDICTED: pyrrolidone-carboxylate pepti 0.844 0.599 0.769 6e-58
297845404217 predicted protein [Arabidopsis lyrata su 0.844 0.599 0.769 2e-57
8778575 368 F28C11.8 [Arabidopsis thaliana] 0.850 0.355 0.748 7e-55
388506610218 unknown [Medicago truncatula] 0.844 0.596 0.748 1e-54
255568774218 pyroglutamyl-peptidase I, putative [Rici 0.844 0.596 0.748 4e-52
363814553217 uncharacterized protein LOC100784344 [Gl 0.844 0.599 0.7 7e-52
449435568220 PREDICTED: pyrrolidone-carboxylate pepti 0.837 0.586 0.689 2e-50
255542992219 pyroglutamyl-peptidase I, putative [Rici 0.844 0.593 0.669 3e-50
356575307221 PREDICTED: pyrrolidone-carboxylate pepti 0.844 0.588 0.676 5e-50
>gi|42562269|ref|NP_173758.2| Peptidase C15, pyroglutamyl peptidase I-like protein [Arabidopsis thaliana] gi|13430708|gb|AAK25976.1|AF360266_1 unknown protein [Arabidopsis thaliana] gi|22136908|gb|AAM91798.1| unknown protein [Arabidopsis thaliana] gi|51969334|dbj|BAD43359.1| unknown protein [Arabidopsis thaliana] gi|51969520|dbj|BAD43452.1| unknown protein [Arabidopsis thaliana] gi|51970030|dbj|BAD43707.1| unknown protein [Arabidopsis thaliana] gi|51970156|dbj|BAD43770.1| unknown protein [Arabidopsis thaliana] gi|51970174|dbj|BAD43779.1| unknown protein [Arabidopsis thaliana] gi|51970494|dbj|BAD43939.1| unknown protein [Arabidopsis thaliana] gi|332192266|gb|AEE30387.1| Peptidase C15, pyroglutamyl peptidase I-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 122/130 (93%)

Query: 25  IHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAIL 84
           +H+GVNSG++KFA+ER+AVNEA F CPD+LGWQPQ++P+V+EDGGIS++++TS STE+I 
Sbjct: 88  LHLGVNSGATKFAIERQAVNEAHFRCPDELGWQPQRLPIVVEDGGISKAKETSCSTESIF 147

Query: 85  KFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVA 144
           + LKKKGF+VV SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS IDEDTQMQFVA
Sbjct: 148 QLLKKKGFEVVQSDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSKIDEDTQMQFVA 207

Query: 145 TLFEAVASTC 154
           +L EA+A+TC
Sbjct: 208 SLLEAIAATC 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225425579|ref|XP_002266223.1| PREDICTED: pyrrolidone-carboxylate peptidase [Vitis vinifera] gi|147822222|emb|CAN63940.1| hypothetical protein VITISV_032502 [Vitis vinifera] gi|297739066|emb|CBI28555.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297845404|ref|XP_002890583.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336425|gb|EFH66842.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|8778575|gb|AAF79583.1|AC007945_3 F28C11.8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388506610|gb|AFK41371.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255568774|ref|XP_002525358.1| pyroglutamyl-peptidase I, putative [Ricinus communis] gi|223535321|gb|EEF36996.1| pyroglutamyl-peptidase I, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|363814553|ref|NP_001242752.1| uncharacterized protein LOC100784344 [Glycine max] gi|255640147|gb|ACU20364.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449435568|ref|XP_004135567.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 1 [Cucumis sativus] gi|449435570|ref|XP_004135568.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 2 [Cucumis sativus] gi|449508620|ref|XP_004163364.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 1 [Cucumis sativus] gi|449508623|ref|XP_004163365.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255542992|ref|XP_002512559.1| pyroglutamyl-peptidase I, putative [Ricinus communis] gi|223548520|gb|EEF50011.1| pyroglutamyl-peptidase I, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356575307|ref|XP_003555783.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 1 [Glycine max] gi|356575309|ref|XP_003555784.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 2 [Glycine max] gi|356575311|ref|XP_003555785.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 3 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query154
TAIR|locus:2028906217 AT1G23440 [Arabidopsis thalian 0.844 0.599 0.776 1.6e-54
TAIR|locus:2027615219 AT1G56700 [Arabidopsis thalian 0.844 0.593 0.646 3.9e-44
DICTYBASE|DDB_G0267498207 pgpep "pyroglutamyl-peptidase 0.811 0.603 0.401 6.3e-21
TIGR_CMR|BA_3090215 BA_3090 "pyrrolidone-carboxyla 0.694 0.497 0.350 1.5e-10
ZFIN|ZDB-GENE-050419-171199 pgpep1l "pyroglutamyl-peptidas 0.675 0.522 0.342 1.1e-09
UNIPROTKB|F1SRY2192 PGPEP1L "Uncharacterized prote 0.688 0.552 0.356 2.2e-09
UNIPROTKB|F1MX35188 PGPEP1L "Uncharacterized prote 0.694 0.569 0.342 4.7e-09
UNIPROTKB|F1NGJ5196 F1NGJ5 "Uncharacterized protei 0.837 0.658 0.282 7.6e-09
UNIPROTKB|F1PRT2196 PGPEP1L "Uncharacterized prote 0.694 0.545 0.333 7.6e-09
UNIPROTKB|A6NFU8196 PGPEP1L "Pyroglutamyl-peptidas 0.681 0.535 0.330 9.7e-09
TAIR|locus:2028906 AT1G23440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 101/130 (77%), Positives = 122/130 (93%)

Query:    25 IHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAIL 84
             +H+GVNSG++KFA+ER+AVNEA F CPD+LGWQPQ++P+V+EDGGIS++++TS STE+I 
Sbjct:    88 LHLGVNSGATKFAIERQAVNEAHFRCPDELGWQPQRLPIVVEDGGISKAKETSCSTESIF 147

Query:    85 KFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVA 144
             + LKKKGF+VV SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS IDEDTQMQFVA
Sbjct:   148 QLLKKKGFEVVQSDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSKIDEDTQMQFVA 207

Query:   145 TLFEAVASTC 154
             +L EA+A+TC
Sbjct:   208 SLLEAIAATC 217
GO:0005737 "cytoplasm" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008233 "peptidase activity" evidence=ISS
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA
TAIR|locus:2027615 AT1G56700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267498 pgpep "pyroglutamyl-peptidase I" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3090 BA_3090 "pyrrolidone-carboxylate peptidase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050419-171 pgpep1l "pyroglutamyl-peptidase I-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SRY2 PGPEP1L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MX35 PGPEP1L "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NGJ5 F1NGJ5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRT2 PGPEP1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A6NFU8 PGPEP1L "Pyroglutamyl-peptidase 1-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.691
3rd Layer3.4.19.30.737

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query154
cd00501194 cd00501, Peptidase_C15, Pyroglutamyl peptidase (PG 4e-38
PRK13194208 PRK13194, PRK13194, pyrrolidone-carboxylate peptid 3e-17
pfam01470203 pfam01470, Peptidase_C15, Pyroglutamyl peptidase 2e-16
COG2039207 COG2039, Pcp, Pyrrolidone-carboxylate peptidase (N 1e-15
TIGR00504212 TIGR00504, pyro_pdase, pyroglutamyl-peptidase I 2e-14
PRK13197215 PRK13197, PRK13197, pyrrolidone-carboxylate peptid 2e-12
PRK13196211 PRK13196, PRK13196, pyrrolidone-carboxylate peptid 2e-12
PRK13193209 PRK13193, PRK13193, pyrrolidone-carboxylate peptid 1e-08
>gnl|CDD|238279 cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins Back     alignment and domain information 
 Score =  128 bits (323), Expect = 4e-38
 Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 8/131 (6%)

Query: 17  HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
               P   IHVG+  G S   +ER A+N      PD  G QP   P+V        S   
Sbjct: 57  EEHKPDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPGGPAAYFST-- 114

Query: 77  SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHVPLFSTI 134
            L  +AI+K L++ G    +S+DAG ++CN+VYY SL  +  +G   ++ F+HVP     
Sbjct: 115 -LPVKAIVKALREAGIPARVSNDAGTYLCNHVYYGSLHESATRGPFIRAGFIHVPYSPEQ 173

Query: 135 DED---TQMQF 142
             D     M  
Sbjct: 174 VADKGAPSMSL 184

The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer. Length = 194
>gnl|CDD|183887 PRK13194, PRK13194, pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>gnl|CDD|201814 pfam01470, Peptidase_C15, Pyroglutamyl peptidase Back     alignment and domain information
>gnl|CDD|224950 COG2039, Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|129595 TIGR00504, pyro_pdase, pyroglutamyl-peptidase I Back     alignment and domain information
>gnl|CDD|237299 PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>gnl|CDD|171895 PRK13196, PRK13196, pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>gnl|CDD|237298 PRK13193, PRK13193, pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 154
PF01470202 Peptidase_C15: Pyroglutamyl peptidase This is fami 100.0
PRK13194208 pyrrolidone-carboxylate peptidase; Provisional 100.0
PRK13193209 pyrrolidone-carboxylate peptidase; Provisional 100.0
PRK13196211 pyrrolidone-carboxylate peptidase; Provisional 100.0
PRK13195222 pyrrolidone-carboxylate peptidase; Provisional 100.0
PRK13197215 pyrrolidone-carboxylate peptidase; Provisional 100.0
TIGR00504212 pyro_pdase pyroglutamyl-peptidase I. Alternate nam 100.0
cd00501194 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, 100.0
COG2039207 Pcp Pyrrolidone-carboxylate peptidase (N-terminal 100.0
KOG4755213 consensus Predicted pyroglutamyl peptidase [Posttr 99.9
PF06162166 DUF976: Caenorhabditis elegans protein of unknown 99.31
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification Back     alignment and domain information 
Probab=100.00  E-value=2.2e-40  Score=262.43  Aligned_cols=135  Identities=39%  Similarity=0.613  Sum_probs=99.5

Q ss_pred             CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031718           16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV   95 (154)
Q Consensus        16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~   95 (154)
                      .++++||+|||+|++++++.|+||++|+|..++++||++|++|.+++|.. +||.  .++|+||+++|+++|+++|+|++
T Consensus        56 l~~~~PdlVIhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~~~i~~-~gp~--~~~t~lp~~~l~~~l~~~gip~~  132 (202)
T PF01470_consen   56 LEEHQPDLVIHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKDEPIVP-DGPE--AYFTTLPVRALVEALREAGIPVE  132 (202)
T ss_dssp             HHHH--SEEEEEEE-TT-SSEEEESEEES-BE-SS--TTS---ESB-SST-TS-S--EEE-BS-HHHHHHHHHHTT--EE
T ss_pred             HHhcCCcEEEEEeecCCcchhhHHHHhhccCCCcCCcccCCccCCccccC-CCcc--ceecCCCHHHHHHHHHHcCCCCc
Confidence            46789999999999999999999999999988999999999999999986 6775  46899999999999999999999


Q ss_pred             ecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCCCC----------ChHHHHHHHHHHHHHHHhh
Q 031718           96 ISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFSTI----------DEDTQMQFVATLFEAVAST  153 (154)
Q Consensus        96 ~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~~~----------~~e~~~~~v~~lI~~ia~~  153 (154)
                      +|+|||+|||||+||+||++.+++  +.+++|||||+++++          +.+.+.+.++..|+++++.
T Consensus       133 ~S~dAG~YlCN~~~Y~sl~~~~~~~~~~~~~FvHvP~~~~~~~~~~~~~s~~l~~~~~a~~~~~~~~~~~  202 (202)
T PF01470_consen  133 ISNDAGRYLCNYIYYRSLHHAERRGPPIPAGFVHVPPLPEQVAEKPGAPSMSLETMVRAVRAAIEAIVDE  202 (202)
T ss_dssp             EES---SSHHHHHHHHHHHHHHHHSTTSEEEEEEE-B-GGGHTTCTTC-B--HHHHHHHHHHHHHHHHHH
T ss_pred             ccCChhhhHHHHHHHHHHHHHhhcCCCCceeEEeeCCchHhhccCCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999998754  578999999986543          3467788899999988763

; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I Back     alignment and domain information
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins Back     alignment and domain information
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query154
2df5_A213 Crystal Structure Of Pf-Pcp(1-204)-C Length = 213 9e-14
1iof_A208 X-Ray Crystalline Structures Of Pyrrolidone Carboxy 1e-13
1x10_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 1e-12
2eo8_A208 Crystal Structure Of A Mutant Pyrrolidone Carboxyl 1e-12
1x12_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 1e-12
1z8w_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 1e-12
1z8x_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 1e-12
1ioi_A208 X-Ray Crystalline Structures Of Pyrrolidone Carboxy 1e-12
1z8t_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 1e-12
1iu8_A206 The X-Ray Crystal Structure Of Pyrrolidone-Carboxyl 3e-12
1a2z_A220 Pyrrolidone Carboxyl Peptidase From Thermococcus Li 3e-11
4hps_A228 Crystal Structure Of A Pyrrolidone-Carboxylate Pept 5e-10
4gxh_A216 Crystal Structure Of A Pyrrolidone-Carboxylate Pept 1e-09
3lac_A215 Crystal Structure Of Bacillus Anthracis Pyrrolidone 3e-09
3rnz_A223 Crystal Structure Of Bacillus Amyloliquefaciens Pyr 1e-06
1aug_A215 Crystal Structure Of The Pyroglutamyl Peptidase I F 2e-06
2ebj_A192 Crystal Structure Of Pyrrolidone Carboxyl Peptidase 2e-06
3giu_A215 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carb 2e-05
>pdb|2DF5|A Chain A, Crystal Structure Of Pf-Pcp(1-204)-C Length = 213 Back     alignment and structure 
Iteration: 1

 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 17  HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
             + P   IHVG+  G S  ++ER AVN      PD  G + +  P+V    G   +  +
Sbjct: 57  EEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIV---PGAPTAYFS 113
Query: 77  SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 129
           +L  + I+K L ++G    IS+ AG ++CNYV Y SL  +  KG+  +  F+HVP
Sbjct: 114 TLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1IOF|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl Peptidase From A Hyperthermophile, Pyrococcus Furiosus, And Its Cys-Free Mutant Length = 208 Back     alignment and structure
>pdb|1X10|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|2EO8|A Chain A, Crystal Structure Of A Mutant Pyrrolidone Carboxyl Peptidase (A199p) From P. Furiosus Length = 208 Back     alignment and structure
>pdb|1X12|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|1Z8W|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|1Z8X|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|1IOI|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl Peptidase From A Hyperthermophile, Pyrococcus Furiosus, And Its Cys-Free Mutant Length = 208 Back     alignment and structure
>pdb|1Z8T|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate Peptidase From Hyperthermophilic Archaeon Pyrococcus Horikoshii Length = 206 Back     alignment and structure
>pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis Length = 220 Back     alignment and structure
>pdb|4HPS|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 In Space Group P21 Length = 228 Back     alignment and structure
>pdb|4GXH|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 Length = 216 Back     alignment and structure
>pdb|3LAC|A Chain A, Crystal Structure Of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp Length = 215 Back     alignment and structure
>pdb|3RNZ|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens Pyroglutamyl Peptidase I Length = 223 Back     alignment and structure
>pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl Peptidase I From Bacillus Amyloliquefaciens Length = 215 Back     alignment and structure
>pdb|2EBJ|A Chain A, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From Thermus Thermophilus Length = 192 Back     alignment and structure
>pdb|3GIU|A Chain A, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate Peptidase (Pcp) From Staphylococcus Aureus Length = 215 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query154
3giu_A215 Pyrrolidone-carboxylate peptidase; IDP00836, hydro 1e-25
1a2z_A220 Pyrrolidone carboxyl peptidase; N-pyroglutamate hy 1e-25
2ebj_A192 Pyrrolidone carboxyl peptidase; TTHA08 degradation 2e-25
3ro0_A223 Pyrrolidone-carboxylate peptidase; hydrolase-hydro 1e-24
1x10_A208 Pyrrolidone-carboxylate peptidase; stability of pr 2e-24
1iu8_A206 Pyrrolidone-carboxylate peptidase; hydrolase, thio 6e-24
3lac_A215 Pyrrolidone-carboxylate peptidase; alpha beta clas 1e-23
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} Length = 215 Back     alignment and structure
 Score = 96.0 bits (238), Expect = 1e-25
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 25  IHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAIL 84
           + +G   G +    ER A+N      PD   +QP    + L+      +  ++L  +A+ 
Sbjct: 67  LAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQAIHLDGAP---AYFSNLPVKAMT 123

Query: 85  KFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHVP 129
           + +  +G    +S+ AG FVCN+  YH     ++     +  F+HVP
Sbjct: 124 QSIINQGLPGALSNSAGTFVCNHTLYHLGYLQDKHYPHLRFGFIHVP 170
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1 Length = 220 Back     alignment and structure
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus} Length = 192 Back     alignment and structure
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} PDB: 3rnz_A* 1aug_A Length = 223 Back     alignment and structure
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A Length = 208 Back     alignment and structure
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1 Length = 206 Back     alignment and structure
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis} Length = 215 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query154
3lac_A215 Pyrrolidone-carboxylate peptidase; alpha beta clas 100.0
3ro0_A223 Pyrrolidone-carboxylate peptidase; hydrolase-hydro 100.0
4hps_A228 Pyrrolidone-carboxylate peptidase; structural geno 100.0
3giu_A215 Pyrrolidone-carboxylate peptidase; IDP00836, hydro 100.0
2ebj_A192 Pyrrolidone carboxyl peptidase; TTHA08 degradation 100.0
1a2z_A220 Pyrrolidone carboxyl peptidase; N-pyroglutamate hy 100.0
1iu8_A206 Pyrrolidone-carboxylate peptidase; hydrolase, thio 100.0
4gxh_A216 Pyrrolidone-carboxylate peptidase; structural geno 100.0
1x10_A208 Pyrrolidone-carboxylate peptidase; stability of pr 100.0
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis} Back     alignment and structure
Probab=100.00  E-value=6.5e-41  Score=266.70  Aligned_cols=135  Identities=29%  Similarity=0.469  Sum_probs=123.0

Q ss_pred             CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031718           16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV   95 (154)
Q Consensus        16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~   95 (154)
                      .++++||+|||+|++++|+.|++||+|+|..+|++||++|++|.+++|.. +||.  .++|+||+++++++|++.|+|++
T Consensus        57 ~~~~~Pd~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~-~Gp~--~~~s~Lpv~~~v~~l~~~gipa~  133 (215)
T 3lac_A           57 IEELAPEFIICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVE-EGPA--AYWSTLPMKAIVKKLQEEGIPAS  133 (215)
T ss_dssp             HHHHCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSST-TSCS--EEECCSCHHHHHHHHHHTTCCEE
T ss_pred             HHhhCCCeEEEeccCCCCceEEEEEEEeccCCCcCCCcCCCCCCCCcCcC-CCCc--eeecCCCHHHHHHHHHhCCCcEE
Confidence            46789999999999999999999999999889999999999999999985 7875  46899999999999999999999


Q ss_pred             ecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCC----------CCChHHHHHHHHHHHHHHHhh
Q 031718           96 ISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS----------TIDEDTQMQFVATLFEAVAST  153 (154)
Q Consensus        96 ~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~----------~~~~e~~~~~v~~lI~~ia~~  153 (154)
                      +|+|||+|||||+||+||++.+++  +.+++|||||+++          .++.|++.+.++..|+++.++
T Consensus       134 vS~dAG~yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~q~~~~~~~p~m~~~~~~~al~~~i~~~~~~  203 (215)
T 3lac_A          134 VSQTAGTFVCNHLFYGLMHELEKHDTKMKGGFIHIPFLPEQASNYPGQPSMSLSTIRKGIELAVEVTTTV  203 (215)
T ss_dssp             EESCCCSSHHHHHHHHHHHHHGGGTTSSEEEEEEECCCHHHHTTSTTCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred             EcCCCCccccHHHHHHHHHHHHhcCCCceEEEEEeCCChHHhccCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999998654  5789999999985          467888899999999988763
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A Back     alignment and structure
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A Back     alignment and structure
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0 Back     alignment and structure
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus} Back     alignment and structure
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1 Back     alignment and structure
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1 Back     alignment and structure
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii} Back     alignment and structure
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 154
d1auga_210 c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro 5e-28
d1iofa_208 c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro 1e-27
d1a2za_220 c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro 2e-27
d1iu8a_206 c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro 8e-27
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]} Length = 210 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

 Score =  100 bits (251), Expect = 5e-28
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 25  IHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAIL 84
           I VG   G  +   ER A+N      PD  G QP    +     G   +  T L  + I+
Sbjct: 67  ICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDI---SQGGPAAYWTGLPIKRIV 123

Query: 85  KFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHVPLFS 132
           + +KK+G    +S  AG FVCN+++Y  +    +     +  F+H+P   
Sbjct: 124 EEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIPYIP 173
>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 208 Back     information, alignment and structure
>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 220 Back     information, alignment and structure
>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 206 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query154
d1iofa_208 Pyrrolidone carboxyl peptidase (pyroglutamate amin 100.0
d1a2za_220 Pyrrolidone carboxyl peptidase (pyroglutamate amin 100.0
d1iu8a_206 Pyrrolidone carboxyl peptidase (pyroglutamate amin 100.0
d1auga_210 Pyrrolidone carboxyl peptidase (pyroglutamate amin 100.0
>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.7e-38  Score=249.49  Aligned_cols=134  Identities=31%  Similarity=0.499  Sum_probs=120.6

Q ss_pred             CccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceEe
Q 031718           17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVI   96 (154)
Q Consensus        17 ~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~   96 (154)
                      ++++||+|||+|++++++.|+||++|+|..++.+||++|++|.+.+|+. +|+.  .++|++|++++++++++.|+++++
T Consensus        57 ~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~-~g~~--~~~t~lp~~~l~~~l~~~g~~v~i  133 (208)
T d1iofa_          57 EEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVP-GAPT--AYFSTLPIKKIMKKLHERGIPAYI  133 (208)
T ss_dssp             HHHCCSEEEEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBCSST-TSCS--EEECCSCHHHHHHHHHHTTCCEEE
T ss_pred             HhCCCcEEEEEeecCCcceEEeEeEEeccCCCccCCccCCcCCCCCccC-CCcc--eeecCCCHHHHHHHHHhcCCCeee
Confidence            5678999999999999999999999999999999999999999999985 5665  468999999999999999999999


Q ss_pred             cCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCCC--------------CChHHHHHHHHHHHHHHHhh
Q 031718           97 SDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST--------------IDEDTQMQFVATLFEAVAST  153 (154)
Q Consensus        97 S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~~--------------~~~e~~~~~v~~lI~~ia~~  153 (154)
                      |+|||+|||||+||+||++.++.  +.+++|||||++++              ++-+.+.++++.+|+.+.+.
T Consensus       134 S~daG~YlCN~~yY~sL~~~~~~~~~~~~~FIHvP~~~~~~~~~~~~~~~~p~~~~~~~~~av~~~i~~~l~~  206 (208)
T d1iofa_         134 SNSAGLYLCNYVMYLSLHHSATKGYPKMSGFIHVPYIPEQIIDKIGKGQVPPSMCYEMELEAVKVAIEVALEE  206 (208)
T ss_dssp             ESCCCSSHHHHHHHHHHHHHHHHSCCSBCCEEEECBCHHHHHHHHHTTCCCCBCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCchhhhhhhHHHHHHHHHHHhcCCCCeEEEEECCCChhhhcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987653  57899999998743              45678889999999988875
>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]} Back     information, alignment and structure