Citrus Sinensis ID: 031733

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
MAPKVDSSKKGDPKAQATKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
cccccccccccccHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHHcccccEEEEcccccccEEEEEEccccccHHHHHHHHccc
ccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHcEEEEEEcccccHHHHHHHHHHHHcccEEEEEEEEcccccEEEEEEEcccccHHHHHHccccc
mapkvdsskkgdpkaQATKVAKAVKSGPTFKKKAKKMRTsvtfhrpktlkkdrnpkyprisapprnkldhyqilkyplttESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVntlirpdgtkkayvrltpdydaldvankigii
mapkvdsskkgdpkaqatkvakavksgptfkkkakkmrtsvtfhrpktlkkdrnpkyprisapprnkldhyQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYeiqtkkvntlirpdgtkkayvrltpdydaldvankigii
MAPKVDSSKKGDPkaqatkvakavkSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
*******************************************************************LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKI***
***********************************KMRTSVTFHRPKT**************PPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
****************************************VTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
********************AKAVK**PTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAPKVDSSKKGDPKAQATKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query153 2.2.26 [Sep-21-2011]
O22644154 60S ribosomal protein L23 N/A no 1.0 0.993 0.889 3e-64
Q9AT35154 60S ribosomal protein L23 N/A no 1.0 0.993 0.870 4e-63
Q07761154 60S ribosomal protein L23 N/A no 1.0 0.993 0.889 3e-55
Q9M3C3154 60S ribosomal protein L23 yes no 1.0 0.993 0.857 4e-53
Q8LD46154 60S ribosomal protein L23 no no 1.0 0.993 0.863 6e-52
P62752156 60S ribosomal protein L23 yes no 0.790 0.775 0.785 6e-48
P62751156 60S ribosomal protein L23 yes no 0.790 0.775 0.785 6e-48
P62750156 60S ribosomal protein L23 yes no 0.790 0.775 0.785 6e-48
Q24JY1156 60S ribosomal protein L23 yes no 0.790 0.775 0.785 6e-48
P51997158 60S ribosomal protein L25 N/A no 0.986 0.955 0.575 5e-42
>sp|O22644|RL23A_FRIAG 60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1 Back     alignment and function desciption
 Score =  243 bits (620), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 137/154 (88%), Positives = 143/154 (92%), Gaps = 1/154 (0%)

Query: 1   MAPKVDSSKKGDPKAQATKVAKAVKSG-PTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPR 59
           MAP    +KK D KAQA KVAKAVKSG  T +KKAKK+RTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 60  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTK 119
           ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIK AVKKMY+IQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 120 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154
This protein binds to a specific region on the 26S rRNA.
Fritillaria agrestis (taxid: 64177)
>sp|Q9AT35|RL23A_DAUCA 60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1 Back     alignment and function description
>sp|Q07761|RL23A_TOBAC 60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1 Back     alignment and function description
>sp|Q9M3C3|R23A2_ARATH 60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1 Back     alignment and function description
>sp|Q8LD46|R23A1_ARATH 60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2 Back     alignment and function description
>sp|P62752|RL23A_RAT 60S ribosomal protein L23a OS=Rattus norvegicus GN=Rpl23a PE=2 SV=1 Back     alignment and function description
>sp|P62751|RL23A_MOUSE 60S ribosomal protein L23a OS=Mus musculus GN=Rpl23a PE=1 SV=1 Back     alignment and function description
>sp|P62750|RL23A_HUMAN 60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1 Back     alignment and function description
>sp|Q24JY1|RL23A_BOVIN 60S ribosomal protein L23a OS=Bos taurus GN=RPL23A PE=2 SV=1 Back     alignment and function description
>sp|P51997|RL25_PUCGR 60S ribosomal protein L25 OS=Puccinia graminis PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query153
449459936153 PREDICTED: 60S ribosomal protein L23a-li 1.0 1.0 0.921 5e-73
449464192153 PREDICTED: 60S ribosomal protein L23a-li 1.0 1.0 0.928 6e-68
356558314153 PREDICTED: 60S ribosomal protein L23A-li 1.0 1.0 0.921 9e-68
356539066151 PREDICTED: 60S ribosomal protein L23A-li 0.986 1.0 0.921 1e-66
363807122153 uncharacterized protein LOC100778548 [Gl 1.0 1.0 0.901 2e-66
351724617151 uncharacterized protein LOC100500043 [Gl 0.986 1.0 0.921 3e-66
449445294152 PREDICTED: 60S ribosomal protein L23a-li 0.993 1.0 0.915 1e-65
255637725151 unknown [Glycine max] 0.986 1.0 0.915 1e-65
388498408153 unknown [Lotus japonicus] 1.0 1.0 0.888 2e-64
449445292153 PREDICTED: 60S ribosomal protein L23a-li 0.993 0.993 0.909 3e-64
>gi|449459936|ref|XP_004147702.1| PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus] gi|449514958|ref|XP_004164525.1| PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  278 bits (711), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 141/153 (92%), Positives = 145/153 (94%)

Query: 1   MAPKVDSSKKGDPKAQATKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPK DSSKK DPKAQA K AKAVKSGPTFKKKAKK+RTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKK 120
           S  PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+K+ IKDAVKKMY+IQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449464192|ref|XP_004149813.1| PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus] gi|449519086|ref|XP_004166566.1| PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356558314|ref|XP_003547452.1| PREDICTED: 60S ribosomal protein L23A-like [Glycine max] Back     alignment and taxonomy information
>gi|356539066|ref|XP_003538021.1| PREDICTED: 60S ribosomal protein L23A-like [Glycine max] Back     alignment and taxonomy information
>gi|363807122|ref|NP_001242083.1| uncharacterized protein LOC100778548 [Glycine max] gi|255629297|gb|ACU14993.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|351724617|ref|NP_001236040.1| uncharacterized protein LOC100500043 [Glycine max] gi|255628763|gb|ACU14726.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449445294|ref|XP_004140408.1| PREDICTED: 60S ribosomal protein L23a-like isoform 2 [Cucumis sativus] gi|449498363|ref|XP_004160518.1| PREDICTED: 60S ribosomal protein L23a-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255637725|gb|ACU19185.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388498408|gb|AFK37270.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449445292|ref|XP_004140407.1| PREDICTED: 60S ribosomal protein L23a-like isoform 1 [Cucumis sativus] gi|449497783|ref|XP_004160517.1| PREDICTED: 60S ribosomal protein L23a-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query153
TAIR|locus:2039712154 RPL23AA "ribosomal protein L23 1.0 0.993 0.805 4.3e-61
TAIR|locus:2100611154 RPL23AB "ribosomal protein L23 1.0 0.993 0.798 3.9e-60
UNIPROTKB|E1BS06155 RPL23A "Uncharacterized protei 0.810 0.8 0.774 2.6e-47
ZFIN|ZDB-GENE-030131-7479155 rpl23a "ribosomal protein L23a 0.986 0.974 0.649 4.2e-47
UNIPROTKB|Q24JY1156 RPL23A "60S ribosomal protein 0.790 0.775 0.785 8.8e-47
UNIPROTKB|E2QZG2156 LOC478212 "Uncharacterized pro 0.790 0.775 0.785 8.8e-47
UNIPROTKB|J9NZX1156 LOC100687735 "Uncharacterized 0.790 0.775 0.785 8.8e-47
UNIPROTKB|J9PAG2156 LOC100687735 "Uncharacterized 0.790 0.775 0.785 8.8e-47
UNIPROTKB|A8MUS3194 RPL23A "Ribosomal protein L23a 0.790 0.623 0.785 8.8e-47
UNIPROTKB|H7BY10158 RPL23A "60S ribosomal protein 0.790 0.765 0.785 8.8e-47
TAIR|locus:2039712 RPL23AA "ribosomal protein L23AA" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 124/154 (80%), Positives = 131/154 (85%)

Query:     1 MAP-KVDSSKKGDPXXXXXXXXXXXXSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPR 59
             M+P KVD++KK DP            SG  FKKK KK+RT VTFHRPKTL K R  KYP+
Sbjct:     1 MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query:    60 ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTK 119
             ISA PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIKDAVKKMY+IQTK
Sbjct:    61 ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query:   120 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
             KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:   121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS;TAS
GO:0015934 "large ribosomal subunit" evidence=TAS
GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS;IDA
GO:0042254 "ribosome biogenesis" evidence=ISS
GO:0005730 "nucleolus" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0009409 "response to cold" evidence=IEP
GO:0009644 "response to high light intensity" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
TAIR|locus:2100611 RPL23AB "ribosomal protein L23AB" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BS06 RPL23A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7479 rpl23a "ribosomal protein L23a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q24JY1 RPL23A "60S ribosomal protein L23a" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZG2 LOC478212 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZX1 LOC100687735 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9PAG2 LOC100687735 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A8MUS3 RPL23A "Ribosomal protein L23a, isoform CRA_a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H7BY10 RPL23A "60S ribosomal protein L23a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LD46R23A1_ARATHNo assigned EC number0.86361.00.9935nono
Q9AT35RL23A_DAUCANo assigned EC number0.87011.00.9935N/Ano
P08792RL25_CYBJANo assigned EC number0.57440.91500.9859N/Ano
Q07761RL23A_TOBACNo assigned EC number0.88961.00.9935N/Ano
P62752RL23A_RATNo assigned EC number0.78510.79080.7756yesno
P62750RL23A_HUMANNo assigned EC number0.78510.79080.7756yesno
P62751RL23A_MOUSENo assigned EC number0.78510.79080.7756yesno
Q54BQ3RL23A_DICDINo assigned EC number0.54910.79730.7218yesno
Q24JY1RL23A_BOVINNo assigned EC number0.78510.79080.7756yesno
P04456RL25_YEASTNo assigned EC number0.60.81690.8802yesno
P51997RL25_PUCGRNo assigned EC number0.5750.98690.9556N/Ano
Q9M3C3R23A2_ARATHNo assigned EC number0.85711.00.9935yesno
P48045RL25_KLULANo assigned EC number0.56730.91500.9859yesno
P48162R23A1_CAEELNo assigned EC number0.64700.77770.8095yesno
O74391RL25B_SCHPONo assigned EC number0.55390.90190.9787yesno
O22644RL23A_FRIAGNo assigned EC number0.88961.00.9935N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
PTZ00191145 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Pr 1e-51
PRK1454884 PRK14548, PRK14548, 50S ribosomal protein L23P; Pr 1e-29
TIGR0363677 TIGR03636, L23_arch, archaeal ribosomal protein L2 6e-27
COG008994 COG0089, RplW, Ribosomal protein L23 [Translation, 8e-21
PRK0573892 PRK05738, rplW, 50S ribosomal protein L23; Reviewe 3e-14
pfam0027690 pfam00276, Ribosomal_L23, Ribosomal protein L23 2e-13
pfam0393952 pfam03939, Ribosomal_L23eN, Ribosomal protein L23, 4e-13
CHL0003093 CHL00030, rpl23, ribosomal protein L23 9e-06
PRK12280158 PRK12280, rplW, 50S ribosomal protein L23; Reviewe 0.002
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional Back     alignment and domain information 
 Score =  161 bits (408), Expect = 1e-51
 Identities = 93/140 (66%), Positives = 108/140 (77%), Gaps = 2/140 (1%)

Query: 14  KAQATKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQI 73
           K +A K AKA K G   K K +K+RTSV F RPKTL+  + PKYPR   P   KLD Y I
Sbjct: 8   KKKAKKAAKAAKKGV--KVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSI 65

Query: 74  LKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKA 133
           +KYPLTTE AMKKIEDNNTLVFIVD RA+K +IK AV+K+Y+++  KVNTLI PDG KKA
Sbjct: 66  IKYPLTTEKAMKKIEDNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKA 125

Query: 134 YVRLTPDYDALDVANKIGII 153
           Y+RL+PD DALDVANKIGII
Sbjct: 126 YIRLSPDVDALDVANKIGII 145

Length = 145
>gnl|CDD|237750 PRK14548, PRK14548, 50S ribosomal protein L23P; Provisional Back     alignment and domain information
>gnl|CDD|132675 TIGR03636, L23_arch, archaeal ribosomal protein L23 Back     alignment and domain information
>gnl|CDD|223167 COG0089, RplW, Ribosomal protein L23 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235586 PRK05738, rplW, 50S ribosomal protein L23; Reviewed Back     alignment and domain information
>gnl|CDD|144021 pfam00276, Ribosomal_L23, Ribosomal protein L23 Back     alignment and domain information
>gnl|CDD|202819 pfam03939, Ribosomal_L23eN, Ribosomal protein L23, N-terminal domain Back     alignment and domain information
>gnl|CDD|176971 CHL00030, rpl23, ribosomal protein L23 Back     alignment and domain information
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 153
KOG1751157 consensus 60s ribosomal protein L23 [Translation, 100.0
PTZ00191145 60S ribosomal protein L23a; Provisional 100.0
PRK1454884 50S ribosomal protein L23P; Provisional 100.0
TIGR0363677 L23_arch archaeal ribosomal protein L23. This mode 100.0
PRK0573892 rplW 50S ribosomal protein L23; Reviewed 99.95
CHL0003093 rpl23 ribosomal protein L23 99.94
COG008994 RplW Ribosomal protein L23 [Translation, ribosomal 99.94
PRK12280158 rplW 50S ribosomal protein L23; Reviewed 99.93
PF0027691 Ribosomal_L23: Ribosomal protein L23; InterPro: IP 99.93
PF0393954 Ribosomal_L23eN: Ribosomal protein L23, N-terminal 99.8
KOG4089165 consensus Predicted mitochondrial ribosomal protei 97.09
PF08777105 RRM_3: RNA binding motif; InterPro: IPR014886 This 82.81
>KOG1751 consensus 60s ribosomal protein L23 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-63  Score=390.71  Aligned_cols=146  Identities=70%  Similarity=0.987  Sum_probs=143.1

Q ss_pred             CCCCCchHHHHHHHHhhhcCCCCcccceeecccccccCCCccCcCCCCCCCCcCCCCCCCCChhhh-hhccccchhhhhh
Q 031733            8 SKKGDPKAQATKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQI-LKYPLTTESAMKK   86 (153)
Q Consensus         8 ~~~~~~k~kalkakkavlkg~~~~~~~~k~~~~~~f~~pktl~~~r~pky~rk~~p~~~kld~~~I-Ik~Pl~TEkamk~   86 (153)
                      ||+++++++||+|+|||++|+|+|++.+.++++++|++|.+++++|+|+|||+|.|+||+||||.+ |++||+||++|+.
T Consensus        11 ~pka~a~akAlkakkav~kgv~~~~~~~~~~t~~~~~rP~t~~~~r~pk~prks~p~~~kld~y~~iik~plTtEsamKk   90 (157)
T KOG1751|consen   11 PPKAEAKAKALKAKKAVLKGVHSHKKKKKSRTSPTFRRPKTLDLTRAPKYPRKSPPRRPKLDHYAIIIKFPLTTESAMKK   90 (157)
T ss_pred             CcchhhhHHHHHHHHHhhccccCCcccCCccccCCCCCCcccccccCccccccccCCCCcchhhhhHhccccchhhhhcc
Confidence            899999999999999999999999986779999999999999999999999999999999999777 8999999999999


Q ss_pred             hccCCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhhccC
Q 031733           87 IEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII  153 (153)
Q Consensus        87 ~E~nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvankigii  153 (153)
                      +||||||||+||.+||||||||||++|||++|++|||||+|+|+|||||+|++|||||||||+||||
T Consensus        91 ~ednNtlvf~vd~kankhqiKqAVkkLyd~dvakvntli~p~g~kkayv~la~dydaldvankig~i  157 (157)
T KOG1751|consen   91 IEDNNTLVFIVDSKANKHQIKQAVKKLYDTDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII  157 (157)
T ss_pred             hhhCceeEEEEecccchHHHHHHHHHHhccchhhheeeecCCCceeEEEecCCchhHHHHhcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999997

>PTZ00191 60S ribosomal protein L23a; Provisional Back     alignment and domain information
>PRK14548 50S ribosomal protein L23P; Provisional Back     alignment and domain information
>TIGR03636 L23_arch archaeal ribosomal protein L23 Back     alignment and domain information
>PRK05738 rplW 50S ribosomal protein L23; Reviewed Back     alignment and domain information
>CHL00030 rpl23 ribosomal protein L23 Back     alignment and domain information
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12280 rplW 50S ribosomal protein L23; Reviewed Back     alignment and domain information
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF03939 Ribosomal_L23eN: Ribosomal protein L23, N-terminal domain; InterPro: IPR005633 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG4089 consensus Predicted mitochondrial ribosomal protein L23 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
2go5_4152 Structure Of Signal Recognition Particle Receptor ( 4e-53
3izr_X152 Localization Of The Large Subunit Ribosomal Protein 4e-52
2zkr_s156 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-48
2ww9_K142 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 6e-38
3zf7_X164 High-resolution Cryo-electron Microscopy Structure 1e-31
1s1i_T83 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-26
3jyw_T80 Structure Of The 60s Proteins For Eukaryotic Riboso 3e-25
4a17_R150 T.Thermophila 60s Ribosomal Subunit In Complex With 3e-25
3bbo_V198 Homology Model For The Spinach Chloroplast 50s Subu 4e-25
3j21_T86 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-17
1ffk_P84 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-14
1s72_S85 Refined Crystal Structure Of The Haloarcula Marismo 2e-14
3g4s_S81 Co-Crystal Structure Of Tiamulin Bound To The Large 3e-13
2gya_R92 Structure Of The 50s Subunit Of A Pre-Translocation 5e-05
2j28_T99 Model Of E. Coli Srp Bound To 70s Rncs Length = 99 6e-05
1p85_R100 Real Space Refined Coordinates Of The 50s Subunit F 6e-05
3fik_T93 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 6e-05
>pdb|2GO5|4 Chain 4, Structure Of Signal Recognition Particle Receptor (Sr) In Complex With Signal Recognition Particle (Srp) And Ribosome Nascent Chain Complex Length = 152 Back     alignment and structure 
Iteration: 1

 Score =  202 bits (515), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 118/153 (77%), Positives = 127/153 (83%), Gaps = 1/153 (0%)
Query: 1   MAPKVDSSKKGDPXXXXXXXXXXXXSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKV  +KKGD             SG + KK AKK+RTSVTFHRPKTL K R+PKYPRI
Sbjct: 1   MAPKVAVAKKGDAKAQAAKVAKAVKSG-SIKKTAKKIRTSVTFHRPKTLSKARDPKYPRI 59
Query: 61  SAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKK 120
           S P RNKLD YQILKYPLTTESAMKKIEDNNTLVFIVD++ADK+KIK AVKKMY+IQ KK
Sbjct: 60  STPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKK 119
Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDG KKAYV+LTPDYDALDVANKIGII
Sbjct: 120 VNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 152
>pdb|3IZR|X Chain X, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 152 Back     alignment and structure
>pdb|2ZKR|SS Chain s, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 156 Back     alignment and structure
>pdb|2WW9|K Chain K, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 142 Back     alignment and structure
>pdb|3ZF7|X Chain X, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 164 Back     alignment and structure
>pdb|1S1I|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 83 Back     alignment and structure
>pdb|3JYW|T Chain T, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 80 Back     alignment and structure
>pdb|4A17|R Chain R, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 150 Back     alignment and structure
>pdb|3BBO|V Chain V, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 198 Back     alignment and structure
>pdb|3J21|T Chain T, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 86 Back     alignment and structure
>pdb|1FFK|P Chain P, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 84 Back     alignment and structure
>pdb|1S72|S Chain S, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 85 Back     alignment and structure
>pdb|3G4S|S Chain S, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 81 Back     alignment and structure
>pdb|2GYA|R Chain R, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 92 Back     alignment and structure
>pdb|2J28|T Chain T, Model Of E. Coli Srp Bound To 70s Rncs Length = 99 Back     alignment and structure
>pdb|1P85|R Chain R, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 100 Back     alignment and structure
>pdb|3FIK|T Chain T, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 93 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
3u5e_X142 60S ribosomal protein L25; translation, ribosome, 7e-56
3iz5_X152 60S ribosomal protein L23A (L23P); eukaryotic ribo 1e-55
4a17_R150 RPL23A, 60S ribosomal protein L21; eukaryotic ribo 2e-51
2zkr_s156 60S ribosomal protein L23A; protein-RNA complex, 6 3e-51
3bbo_V198 Ribosomal protein L23; large ribosomal subunit, sp 2e-50
1vq8_S85 50S ribosomal protein L23P; ribosome 50S, protein- 2e-39
3r8s_T93 50S ribosomal protein L23; protein biosynthesis, R 9e-14
2zjr_Q95 50S ribosomal protein L23; ribosome, large ribosom 3e-13
3tve_T92 50S ribosomal protein L23; RNA, ribosome, tRNA, tr 1e-12
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 1s1i_T 3jyw_T Length = 142 Back     alignment and structure
 Score =  171 bits (434), Expect = 7e-56
 Identities = 83/141 (58%), Positives = 106/141 (75%), Gaps = 1/141 (0%)

Query: 13  PKAQATKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQ 72
           P A+AT   KAV  G T  KKA K+RTS TF  PKTLK  R PKY   + P  N+LD Y+
Sbjct: 3   PSAKATAAKKAVVKG-TNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYK 61

Query: 73  ILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKK 132
           +++ P+T+E+AMKK+ED N LVF V ++A+K +IK AVK++YE+   KVNTL+RP+GTKK
Sbjct: 62  VIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKK 121

Query: 133 AYVRLTPDYDALDVANKIGII 153
           AYVRLT DYDALD+AN+IG I
Sbjct: 122 AYVRLTADYDALDIANRIGYI 142
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R Length = 150 Back     alignment and structure
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 156 Back     alignment and structure
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 198 Back     alignment and structure
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ... Length = 85 Back     alignment and structure
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T 1vs6_T ... Length = 93 Back     alignment and structure
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U Length = 95 Back     alignment and structure
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ... Length = 92 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query153
3iz5_X152 60S ribosomal protein L23A (L23P); eukaryotic ribo 100.0
3u5e_X142 60S ribosomal protein L25; translation, ribosome, 100.0
4a17_R150 RPL23A, 60S ribosomal protein L21; eukaryotic ribo 100.0
2zkr_s156 60S ribosomal protein L23A; protein-RNA complex, 6 100.0
3bbo_V198 Ribosomal protein L23; large ribosomal subunit, sp 100.0
3j21_T86 50S ribosomal protein L23P; archaea, archaeal, KIN 100.0
1vq8_S85 50S ribosomal protein L23P; ribosome 50S, protein- 100.0
3tve_T92 50S ribosomal protein L23; RNA, ribosome, tRNA, tr 99.98
2zjr_Q95 50S ribosomal protein L23; ribosome, large ribosom 99.97
3r8s_T93 50S ribosomal protein L23; protein biosynthesis, R 99.97
1owx_A121 Lupus LA protein, SS-B, LA; RRM, transcription; NM 81.06
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T Back     alignment and structure
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R Back     alignment and structure
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ... Back     alignment and structure
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ... Back     alignment and structure
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U Back     alignment and structure
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ... Back     alignment and structure
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 153
d1vqos181 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon 3e-30
d2qamt193 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherich 1e-18
d2j01x193 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus t 4e-15
d2zjrq193 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococc 4e-15
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 81 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  102 bits (256), Expect = 3e-30
 Identities = 35/80 (43%), Positives = 53/80 (66%)

Query: 71  YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGT 130
           + ++K+P  TE AM  ++  N L F VD RA K ++ DAV++ Y++  ++VNT    DG 
Sbjct: 2   WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE 61

Query: 131 KKAYVRLTPDYDALDVANKI 150
           KKA VRL+ D DA +VA++I
Sbjct: 62  KKAVVRLSEDDDAQEVASRI 81
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]} Length = 93 Back     information, alignment and structure
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]} Length = 93 Back     information, alignment and structure
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]} Length = 93 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query153
d1vqos181 Ribosomal protein L23 {Archaeon Haloarcula marismo 100.0
d2zjrq193 Ribosomal protein L23 {Deinococcus radiodurans [Ta 99.95
d2qamt193 Ribosomal protein L23 {Escherichia coli [TaxId: 56 99.93
d2j01x193 Ribosomal protein L23 {Thermus thermophilus [TaxId 99.91
d1fxla285 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 83.96
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=5.5e-34  Score=201.09  Aligned_cols=81  Identities=43%  Similarity=0.618  Sum_probs=79.2

Q ss_pred             hhhhhhccccchhhhhhhccCCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q 031733           70 HYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANK  149 (153)
Q Consensus        70 ~~~IIk~Pl~TEkamk~~E~nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvank  149 (153)
                      .|+||++|++||+++.++|++|+|+|.||++|||.|||+|||++|||+|.+|||+++|+|+|||||+|++|++|+|+|++
T Consensus         1 ~y~iI~~P~iTEKs~~~~e~~n~y~F~V~~~A~K~~IK~AVe~lf~VkV~~Vnt~~~~~~~KkA~V~L~~~~~a~dia~k   80 (81)
T d1vqos1           1 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASR   80 (81)
T ss_dssp             CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHTT
T ss_pred             CcceeeccccCHHHHHHHHhCCEEEEEEcCcCCHHHHHHHHHHHcCCceeEEEEeEcCCCcEEEEEEeCCCCcHHHHHhc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             h
Q 031733          150 I  150 (153)
Q Consensus       150 i  150 (153)
                      |
T Consensus        81 i   81 (81)
T d1vqos1          81 I   81 (81)
T ss_dssp             C
T ss_pred             C
Confidence            6
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure