Citrus Sinensis ID: 031778

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFLC
cccccccccccccEEEEEEcccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHccccccccEEEEEEEcccccccccEEcccccccccccccccEEEEEEc
cccEccccccccHHHHccccccEEccccHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEcccccccHHHHHHccccccEEccHHHHHHHHHHHHHHHHHHHcccccHHHcEEEEEEEEEEEEEccEEEEHHHEcccccccccEEEEEEEc
mvkyskepdnptksckargsdlrvhfKNTRETAHAIRKLPLTKAKRYLEDVMAHKqaipftrfcggvgrtaqaknrhpngqgrwpvKSAKFILDLLKNaesnaevkgldvdALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFLC
mvkyskepdnptksckargsdlrvhfkntretahairklplTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAknrhpngqgrwpvKSAKFILDLLKNAESNAEVKGLDVDALYISHIqvnqaqkqRRRTYRAHGRINRMFLVLFHLCLIFLC
MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFLC
*************************F***RETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTA**********GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL*
*VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFLC
***************KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV**********YRAHGRINRMFLVLFHLCLIFLC
****************ARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFLC
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MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFLC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query153 2.2.26 [Sep-21-2011]
P51413175 60S ribosomal protein L17 yes no 0.986 0.862 0.860 2e-72
Q93VI3176 60S ribosomal protein L17 yes no 0.986 0.857 0.854 8e-72
O48557171 60S ribosomal protein L17 N/A no 0.986 0.883 0.827 3e-69
P35266170 60S ribosomal protein L17 N/A no 0.986 0.888 0.814 6e-68
P35267172 60S ribosomal protein L17 N/A no 0.986 0.877 0.794 2e-66
P37380183 60S ribosomal protein L17 N/A no 0.973 0.814 0.693 1e-52
P18621184 60S ribosomal protein L17 no no 0.980 0.815 0.642 4e-50
Q5XTY7184 60S ribosomal protein L17 N/A no 0.980 0.815 0.642 4e-50
Q4KTG9191 60S ribosomal protein L17 N/A no 0.993 0.795 0.640 6e-50
P24049184 60S ribosomal protein L17 yes no 0.980 0.815 0.642 6e-50
>sp|P51413|RL172_ARATH 60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2 Back     alignment and function desciption
 Score =  270 bits (691), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/151 (86%), Positives = 136/151 (90%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINRMFLVLFHLCLIF 151
           NQA KQRRRTYRAHGRIN       H+ LI 
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELIL 151

Arabidopsis thaliana (taxid: 3702)
>sp|Q93VI3|RL171_ARATH 60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1 Back     alignment and function description
>sp|O48557|RL17_MAIZE 60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1 Back     alignment and function description
>sp|P35266|RL171_HORVU 60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description
>sp|P35267|RL172_HORVU 60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description
>sp|P37380|RL17_PODCA 60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1 Back     alignment and function description
>sp|P18621|RL17_HUMAN 60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3 Back     alignment and function description
>sp|Q5XTY7|RL17_FELCA 60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3 Back     alignment and function description
>sp|Q4KTG9|RL17_SUBDO 60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1 Back     alignment and function description
>sp|P24049|RL17_RAT 60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query153
330318574186 ribosomal petrp-like protein [Camellia s 0.986 0.811 0.894 1e-73
351723867181 uncharacterized protein LOC100305777 [Gl 0.986 0.834 0.887 3e-73
449435065183 PREDICTED: 60S ribosomal protein L17-2-l 0.986 0.825 0.874 3e-73
255547740 1086 protein with unknown function [Ricinus c 0.986 0.139 0.887 6e-73
449452899183 PREDICTED: 60S ribosomal protein L17-2-l 0.986 0.825 0.874 8e-73
147838177183 hypothetical protein VITISV_011749 [Viti 0.986 0.825 0.874 1e-72
225425462185 PREDICTED: 60S ribosomal protein L17-2-l 0.986 0.816 0.874 1e-72
356540150181 PREDICTED: 60S ribosomal protein L17-1-l 0.986 0.834 0.874 1e-72
313586527183 60S ribosomal protein L17A [Hevea brasil 0.986 0.825 0.874 3e-72
356525150181 PREDICTED: 60S ribosomal protein L17-2-l 0.986 0.834 0.880 3e-72
>gi|330318574|gb|AEC10957.1| ribosomal petrp-like protein [Camellia sinensis] Back     alignment and taxonomy information
 Score =  280 bits (716), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/151 (89%), Positives = 137/151 (90%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFC GVGRTAQAKNRH NGQGRWPVKSA FILDLLKNAESNAEVKGLDVD LYISHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPVKSAGFILDLLKNAESNAEVKGLDVDTLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINRMFLVLFHLCLIF 151
           NQAQKQRRRTYRAHGRIN       H+ LI 
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELIL 151

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|351723867|ref|NP_001236526.1| uncharacterized protein LOC100305777 [Glycine max] gi|255626585|gb|ACU13637.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449435065|ref|XP_004135316.1| PREDICTED: 60S ribosomal protein L17-2-like [Cucumis sativus] gi|449494927|ref|XP_004159685.1| PREDICTED: 60S ribosomal protein L17-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255547740|ref|XP_002514927.1| protein with unknown function [Ricinus communis] gi|223545978|gb|EEF47481.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|449452899|ref|XP_004144196.1| PREDICTED: 60S ribosomal protein L17-2-like [Cucumis sativus] gi|449489236|ref|XP_004158255.1| PREDICTED: 60S ribosomal protein L17-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147838177|emb|CAN74145.1| hypothetical protein VITISV_011749 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225425462|ref|XP_002279258.1| PREDICTED: 60S ribosomal protein L17-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356540150|ref|XP_003538553.1| PREDICTED: 60S ribosomal protein L17-1-like [Glycine max] Back     alignment and taxonomy information
>gi|313586527|gb|ADR71274.1| 60S ribosomal protein L17A [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|356525150|ref|XP_003531190.1| PREDICTED: 60S ribosomal protein L17-2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query153
TAIR|locus:2197624175 AT1G67430 [Arabidopsis thalian 0.980 0.857 0.866 9.4e-66
TAIR|locus:2015929176 AT1G27400 [Arabidopsis thalian 0.980 0.852 0.86 2.5e-65
ZFIN|ZDB-GENE-030131-8585184 rpl17 "ribosomal protein L17" 0.895 0.744 0.688 1.6e-47
UNIPROTKB|E2R3D3184 LOC474501 "Uncharacterized pro 0.895 0.744 0.688 1.1e-46
UNIPROTKB|J3KRX5174 RPL17 "60S ribosomal protein L 0.895 0.787 0.688 1.1e-46
UNIPROTKB|J3QL51228 RPL17 "60S ribosomal protein L 0.895 0.600 0.688 1.1e-46
UNIPROTKB|J3QQT2171 RPL17 "60S ribosomal protein L 0.895 0.801 0.688 1.1e-46
UNIPROTKB|J3QS96138 RPL17 "60S ribosomal protein L 0.895 0.992 0.688 1.1e-46
UNIPROTKB|P18621184 RPL17 "60S ribosomal protein L 0.895 0.744 0.688 1.1e-46
UNIPROTKB|F1NG53187 RPL17 "Uncharacterized protein 0.895 0.732 0.688 1.4e-46
TAIR|locus:2197624 AT1G67430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 130/150 (86%), Positives = 136/150 (90%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
             MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct:     1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query:    61 TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
             TRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct:    61 TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query:   121 NQAQKQRRRTYRAHGRINRMFLVLFHLCLI 150
             NQA KQRRRTYRAHGRIN       H+ LI
Sbjct:   121 NQAAKQRRRTYRAHGRINPYMSNPCHIELI 150
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0015934 "large ribosomal subunit" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
TAIR|locus:2015929 AT1G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8585 rpl17 "ribosomal protein L17" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R3D3 LOC474501 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J3KRX5 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3QL51 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3QQT2 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3QS96 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P18621 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG53 RPL17 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5I5J1RL17_PECGUNo assigned EC number0.56860.97380.8142N/Ano
Q9HE25RL17_NEUCRNo assigned EC number0.54960.98030.8064N/Ano
Q46GA0RL22_METBFNo assigned EC number0.40.84310.8543yesno
O59794RL17B_SCHPONo assigned EC number0.62040.88880.7272yesno
Q54NG2RL17_DICDINo assigned EC number0.65920.87580.7444yesno
Q6BM53RL17_DEBHANo assigned EC number0.55620.98030.8108yesno
Q8PV45RL22_METMANo assigned EC number0.40.84310.8543yesno
Q93VI3RL171_ARATHNo assigned EC number0.85430.98690.8579yesno
O48557RL17_MAIZENo assigned EC number0.82780.98690.8830N/Ano
P51413RL172_ARATHNo assigned EC number0.86090.98690.8628yesno
A0NGY0RL17_ANOGANo assigned EC number0.62410.96730.7914yesno
P24049RL17_RATNo assigned EC number0.64230.98030.8152yesno
Q29IM3RL17_DROPSNo assigned EC number0.59600.98030.8064yesno
Q4UF75RL17_THEANNo assigned EC number0.59210.96730.7914yesno
Q3T025RL17_BOVINNo assigned EC number0.64230.98030.8152yesno
Q0PXV9RL17_DIACINo assigned EC number0.61580.98030.8108N/Ano
A8CAG3RL17_PHLPPNo assigned EC number0.60920.98030.8064N/Ano
Q4GXH6RL17_BIPLUNo assigned EC number0.63080.96730.8176N/Ano
A8AA19RL22_IGNH4No assigned EC number0.40420.92150.8867yesno
A5UL84RL22_METS3No assigned EC number0.36480.94110.9350yesno
Q09JW2RL17_ARGMONo assigned EC number0.64230.98030.8108N/Ano
A2I3Y6RL17_MACHINo assigned EC number0.59600.98030.8108N/Ano
P46990RL17B_YEASTNo assigned EC number0.580.97380.8097yesno
Q6MY48RL17_ASPFUNo assigned EC number0.54660.97380.7680yesno
O14339RL17A_SCHPONo assigned EC number0.62770.88880.7272yesno
A3DNB2RL22_STAMFNo assigned EC number0.37580.94770.9235yesno
O28359RL22_ARCFUNo assigned EC number0.38250.95420.9419yesno
Q4N4B9RL17_THEPANo assigned EC number0.59210.96730.7914yesno
P05740RL17A_YEASTNo assigned EC number0.58660.97380.8097yesno
Q9BL19RL17_CAEELNo assigned EC number0.62660.97380.7967yesno
Q97BX2RL22_THEVONo assigned EC number0.37330.92810.9594yesno
Q5XTY7RL17_FELCANo assigned EC number0.64230.98030.8152N/Ano
P35266RL171_HORVUNo assigned EC number0.81450.98690.8882N/Ano
P35267RL172_HORVUNo assigned EC number0.79470.98690.8779N/Ano
P37380RL17_PODCANo assigned EC number0.69330.97380.8142N/Ano
Q6XJ13RL17_DROYANo assigned EC number0.60260.98030.8064N/Ano
Q12ZU6RL22_METBUNo assigned EC number0.42220.84310.8543yesno
Q9CPR4RL17_MOUSENo assigned EC number0.64230.98030.8152yesno
Q4PM54RL17_IXOSCNo assigned EC number0.64230.98030.8108N/Ano
Q6CBS7RL17_YARLINo assigned EC number0.56290.98030.8152yesno
Q9W3W8RL17_DROMENo assigned EC number0.60260.98030.8064yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
PTZ00178181 PTZ00178, PTZ00178, 60S ribosomal protein L17; Pro 8e-79
TIGR01038150 TIGR01038, L22_arch, ribosomal protein L22(archaea 3e-61
PRK04223153 PRK04223, rpl22p, 50S ribosomal protein L22P; Revi 7e-45
cd00336105 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e 2e-31
pfam00237105 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L 2e-27
COG0091120 COG0091, RplV, Ribosomal protein L22 [Translation, 4e-26
PRK00565112 PRK00565, rplV, 50S ribosomal protein L22; Reviewe 3e-07
PRK12279 311 PRK12279, PRK12279, 50S ribosomal protein L22/unkn 2e-04
CHL00034117 CHL00034, rpl22, ribosomal protein L22 0.004
>gnl|CDD|240306 PTZ00178, PTZ00178, 60S ribosomal protein L17; Provisional Back     alignment and domain information 
 Score =  231 bits (590), Expect = 8e-79
 Identities = 94/138 (68%), Positives = 114/138 (82%), Gaps = 1/138 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKY+++P NP+KS KA+GSDLRVHFKNT ETA AI+ + L +A++YLEDV+A K+ +PF
Sbjct: 1   MVKYARKPQNPSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPF 60

Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RF GGVGRTAQAK    + QGRWP KS KF+L LLKNAE+NAE KGLDV+ L ISH+QV
Sbjct: 61  RRFNGGVGRTAQAKE-FGHTQGRWPEKSVKFVLSLLKNAEANAEAKGLDVEKLVISHVQV 119

Query: 121 NQAQKQRRRTYRAHGRIN 138
           N+A + RRRTYRAHGRIN
Sbjct: 120 NRAPRGRRRTYRAHGRIN 137

Length = 181
>gnl|CDD|211620 TIGR01038, L22_arch, ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal) Back     alignment and domain information
>gnl|CDD|179794 PRK04223, rpl22p, 50S ribosomal protein L22P; Reviewed Back     alignment and domain information
>gnl|CDD|238205 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e Back     alignment and domain information
>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e Back     alignment and domain information
>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234793 PRK00565, rplV, 50S ribosomal protein L22; Reviewed Back     alignment and domain information
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|214342 CHL00034, rpl22, ribosomal protein L22 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 153
TIGR01038150 L22_arch ribosomal protein L22(archaeal)/L17(eukar 100.0
PTZ00178181 60S ribosomal protein L17; Provisional 100.0
PRK04223153 rpl22p 50S ribosomal protein L22P; Reviewed 100.0
COG0091120 RplV Ribosomal protein L22 [Translation, ribosomal 100.0
CHL00034117 rpl22 ribosomal protein L22 100.0
PRK00565112 rplV 50S ribosomal protein L22; Reviewed 100.0
TIGR01044103 rplV_bact ribosomal protein L22, bacterial type. T 100.0
KOG3353175 consensus 60S ribosomal protein L22 [Translation, 100.0
cd00336105 Ribosomal_L22 Ribosomal protein L22/L17e. L22 (L17 100.0
PF00237105 Ribosomal_L22: Ribosomal protein L22p/L17e; InterP 100.0
PRK12279 311 50S ribosomal protein L22/unknown domain fusion pr 100.0
KOG1711218 consensus Mitochondrial/chloroplast ribosomal prot 99.89
>TIGR01038 L22_arch ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal) Back     alignment and domain information 
Probab=100.00  E-value=8.2e-60  Score=364.01  Aligned_cols=148  Identities=53%  Similarity=0.765  Sum_probs=146.1

Q ss_pred             ccCCCCCCCceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCCCCC
Q 031778            4 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGR   83 (153)
Q Consensus         4 ys~~~~~~~~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~gr   83 (153)
                      ||++++||+++++|.++++++||+|+++||++||||++++|+++|++|+++|+||||++|++|+||++|+++ ++|++||
T Consensus         1 ys~~~~~~~~~akA~~~~~riS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~~~g~~~~~~~-~~~~~gR   79 (150)
T TIGR01038         1 YSYKPEDPTKSAKARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRRYNGKVGHRRGLKE-WGWTAGR   79 (150)
T ss_pred             CCcCCCCCCeeEEEEeCCCcccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccc-cccccCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999 6999999


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778           84 WPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL  152 (153)
Q Consensus        84 ~p~KaA~~i~klL~sa~aNA~~kgld~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~  152 (153)
                      ||+|+|+.|+|||+||++||+++|+|+|+|||.||+||+|+++||++|||+||++|+++++|||||+|+
T Consensus        80 ~P~Kaa~~i~klL~sA~aNA~~~gld~d~L~I~~i~vnkg~~~kR~~prA~GRa~~~~k~~~HI~Iil~  148 (150)
T TIGR01038        80 YPVKAAKFILKVLQNAEANAEYKGLDVEKLVIIHIQANKGPKIRRWMPRAFGRATPYNSSPTHIELVVE  148 (150)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCCccCCCCCccCCCCCcccCCCceEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999999986

This model describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23. The corresponding bacterial homolog, described by a separate model, is designated L22.
>PTZ00178 60S ribosomal protein L17; Provisional Back     alignment and domain information
>PRK04223 rpl22p 50S ribosomal protein L22P; Reviewed Back     alignment and domain information
>COG0091 RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00034 rpl22 ribosomal protein L22 Back     alignment and domain information
>PRK00565 rplV 50S ribosomal protein L22; Reviewed Back     alignment and domain information
>TIGR01044 rplV_bact ribosomal protein L22, bacterial type Back     alignment and domain information
>KOG3353 consensus 60S ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00336 Ribosomal_L22 Ribosomal protein L22/L17e Back     alignment and domain information
>PF00237 Ribosomal_L22: Ribosomal protein L22p/L17e; InterPro: IPR001063 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional Back     alignment and domain information
>KOG1711 consensus Mitochondrial/chloroplast ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
3izr_V171 Localization Of The Large Subunit Ribosomal Protein 1e-69
2zkr_r184 Structure Of A Mammalian Ribosomal 60s Subunit With 4e-51
2ww9_I184 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 3e-45
3izs_V170 Localization Of The Large Subunit Ribosomal Protein 3e-45
1s1i_N183 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-44
3jyw_N150 Structure Of The 60s Proteins For Eukaryotic Riboso 5e-44
4a17_Q183 T.Thermophila 60s Ribosomal Subunit In Complex With 1e-38
3zf7_R166 High-resolution Cryo-electron Microscopy Structure 5e-32
1s72_R155 Refined Crystal Structure Of The Haloarcula Marismo 1e-14
3g4s_R150 Co-Crystal Structure Of Tiamulin Bound To The Large 1e-14
1ffk_O154 Crystal Structure Of The Large Ribosomal Subunit Fr 1e-14
3j21_S155 Promiscuous Behavior Of Proteins In Archaeal Riboso 5e-14
1yj9_R152 Crystal Structure Of The Mutant 50s Ribosomal Subun 4e-13
>pdb|3IZR|V Chain V, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 171 Back     alignment and structure 
Iteration: 1

 Score =  258 bits (658), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 132/151 (87%)
Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+E +NPTKS KA G DLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 61  TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+CGGVGRTAQAK+RH NGQGRWP KSA+FILDLLKNAESNAEVKGLDVD LY+SHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQV 120
Query: 121 NQAQKQRRRTYRAHGRINRMFLVLFHLCLIF 151
           NQAQKQRRRTYRAHGRIN       H+ LI 
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELIL 151
>pdb|2ZKR|RR Chain r, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 184 Back     alignment and structure
>pdb|2WW9|I Chain I, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 184 Back     alignment and structure
>pdb|3IZS|V Chain V, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 170 Back     alignment and structure
>pdb|1S1I|N Chain N, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 183 Back     alignment and structure
>pdb|3JYW|N Chain N, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 150 Back     alignment and structure
>pdb|4A17|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 183 Back     alignment and structure
>pdb|3ZF7|R Chain R, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 166 Back     alignment and structure
>pdb|1S72|R Chain R, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 155 Back     alignment and structure
>pdb|3G4S|R Chain R, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 150 Back     alignment and structure
>pdb|1FFK|O Chain O, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 154 Back     alignment and structure
>pdb|3J21|S Chain S, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 155 Back     alignment and structure
>pdb|1YJ9|R Chain R, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
3iz5_V171 60S ribosomal protein L17 (L22P); eukaryotic ribos 7e-70
3u5e_P184 L20A, YL17, 60S ribosomal protein L17-A; translati 3e-63
4a17_Q183 RPL17, 60S ribosomal protein L21; eukaryotic ribos 2e-62
2zkr_r184 60S ribosomal protein L17; protein-RNA complex, 60 9e-62
1vq8_R155 50S ribosomal protein L22P; ribosome 50S, protein- 4e-61
3r8s_S110 50S ribosomal protein L22; protein biosynthesis, R 3e-08
2zjr_P134 50S ribosomal protein L22; ribosome, large ribosom 1e-07
1i4j_A110 50S ribosomal protein L22; mutant, erythromycin re 2e-07
2ftc_M110 Mitochondrial ribosomal protein L22 isoform A; mit 4e-07
3bbo_U199 Ribosomal protein L22; large ribosomal subunit, sp 8e-07
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V 3jyw_N Length = 184 Back     alignment and structure
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q Length = 183 Back     alignment and structure
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 184 Back     alignment and structure
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Length = 155 Back     alignment and structure
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Length = 110 Back     alignment and structure
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ... Length = 134 Back     alignment and structure
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Length = 110 Back     alignment and structure
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M Length = 110 Back     alignment and structure
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 199 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query153
4a17_Q183 RPL17, 60S ribosomal protein L21; eukaryotic ribos 100.0
3iz5_V171 60S ribosomal protein L17 (L22P); eukaryotic ribos 100.0
2zkr_r184 60S ribosomal protein L17; protein-RNA complex, 60 100.0
3u5e_P184 L20A, YL17, 60S ribosomal protein L17-A; translati 100.0
3j21_S155 50S ribosomal protein L22P; archaea, archaeal, KIN 100.0
1vq8_R155 50S ribosomal protein L22P; ribosome 50S, protein- 100.0
3r8s_S110 50S ribosomal protein L22; protein biosynthesis, R 100.0
2ftc_M110 Mitochondrial ribosomal protein L22 isoform A; mit 100.0
2zjr_P134 50S ribosomal protein L22; ribosome, large ribosom 100.0
1i4j_A110 50S ribosomal protein L22; mutant, erythromycin re 100.0
3bbo_U199 Ribosomal protein L22; large ribosomal subunit, sp 100.0
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q Back     alignment and structure
Probab=100.00  E-value=1.3e-65  Score=405.58  Aligned_cols=151  Identities=54%  Similarity=0.786  Sum_probs=149.5

Q ss_pred             CccccCCCCCCCceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCC
Q 031778            1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG   80 (153)
Q Consensus         1 ~~~ys~~~~~~~~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~   80 (153)
                      |++||++|+||+++|+|++++++|||+|+++||++||||++++|+.||++||++|+||||+||||||||++|+++ |+|+
T Consensus         3 m~~Ys~~~~~p~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~-~g~~   81 (183)
T 4a17_Q            3 KTNYSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHE-FGRT   81 (183)
T ss_dssp             CCCCSSCCSCTTSEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGG-TTCS
T ss_pred             ccccCCCCCCCCeeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhh-cCCc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999 7999


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778           81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL  152 (153)
Q Consensus        81 ~gr~p~KaA~~i~klL~sa~aNA~~kgld~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~  152 (153)
                      +||||+|||++|++||+||++||+++|||+|+|||+||+||+||+++|++|||+||++|+.+++|||||+|+
T Consensus        82 ~Gr~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~hi~Vnkgp~~kR~~pRA~GRa~pi~k~~~HIeiil~  153 (183)
T 4a17_Q           82 QGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVNRAQKGRRRTYRAHGRINPYLNSGCHVEIFAQ  153 (183)
T ss_dssp             BEECCHHHHHHHHHHHHHHHHHTTTTTCCSTTEEEEEEEEEECCCEEEEEEETTTEEEEEEECCEEEEEEEE
T ss_pred             cCcCcHHHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEECCCCcccCcCccCCCCcCCccCCCCCEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999999999986
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N Back     alignment and structure
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Back     alignment and structure
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Back     alignment and structure
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M Back     alignment and structure
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ... Back     alignment and structure
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Back     alignment and structure
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 153
d1vqor1150 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon 2e-45
d2gycq1106 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escheric 2e-09
d2zjrp1127 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococ 5e-09
d1i4ja_110 d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquat 5e-06
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  143 bits (363), Expect = 2e-45
 Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 4/149 (2%)

Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  I+     +A  YLE V+   Q +PF 
Sbjct: 2   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 60

Query: 62  RFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 61  QHNSGVGHKSKVDGW---DAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 117

Query: 122 QAQKQRRRTYRAHGRINRMFLVLFHLCLI 150
           +  +Q+ R  RA GR +        + LI
Sbjct: 118 KVGEQQGRKPRAMGRASAWNSPQVDVELI 146
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Length = 106 Back     information, alignment and structure
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Length = 127 Back     information, alignment and structure
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Length = 110 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query153
d1vqor1150 Ribosomal protein L22 {Archaeon Haloarcula marismo 100.0
d1i4ja_110 Ribosomal protein L22 {Thermus aquaticus, subsp. T 100.0
d2zjrp1127 Ribosomal protein L22 {Deinococcus radiodurans [Ta 100.0
d2gycq1106 Ribosomal protein L22 {Escherichia coli [TaxId: 56 100.0
d1r9pa_134 NifU-like protein HI0377 {Haemophilus influenzae [ 83.56
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.7e-52  Score=320.25  Aligned_cols=147  Identities=32%  Similarity=0.492  Sum_probs=142.9

Q ss_pred             ccccCCCCCCCceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCCC
Q 031778            2 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQ   81 (153)
Q Consensus         2 ~~ys~~~~~~~~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~   81 (153)
                      ++||++. ||+++++|+++++++||||+++||++||||++++|+++|++|+.+|++|||++|++++||+++.   .+|..
T Consensus         2 ~~y~~~~-~~~~~~kA~~~~~riS~kK~~~va~~IrGk~v~~A~~~L~~v~~kk~avp~~~~~~~v~~~~~~---~~~~~   77 (150)
T d1vqor1           2 ISYSVEA-DPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKV---DGWDA   77 (150)
T ss_dssp             CCCSSCC-CTTTEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTC---SSCSB
T ss_pred             CcccccC-CCCceEEEEeCCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhh---cCCCc
Confidence            6899975 8899999999999999999999999999999999999999999999999999999999999988   56789


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778           82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL  152 (153)
Q Consensus        82 gr~p~KaA~~i~klL~sa~aNA~~kgld~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~  152 (153)
                      |+||+|+|+.|+|+|+||++||+++|+|+|+|||.+++||+|+++||++|||+||++++++++|||+|+|+
T Consensus        78 g~~p~kaa~~i~kll~sa~aNA~~~~~d~~~L~I~~~~v~kG~~~KR~~prArGRa~~i~k~~~hi~vvL~  148 (150)
T d1vqor1          78 GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILE  148 (150)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEE
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCccccCcCcccCCCCCCccCCCceEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999996
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Back     information, alignment and structure
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure