Citrus Sinensis ID: 031802

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MGPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKVTLITTNFNVVPFFLFG
Secondary Structure (PSIPRED)
cccccccccccccHHHHHccccccccccccccccccccEEEcccccccccHHHHHccccccEEEEEEcccccEEEEccccEEEEccccEEEEEccEEEEEEccccccccccccccccccccccccccccEEEEcccccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHccccHHccccccccccEEEEEcccccHcHHHccccccccEEEEEEEEcccEEEHHHHHHHEcccccEEEEEcccEEEEEccccccccccccccccHHHHccccccccEEEEEEEEEEEEcccccccHHHcc
Coil and Loop (DISEMBL)
mgpdeednrwppwlkpllreSFFVqcklhpdshksecnmycldcmngafcsLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFlnerpqprpgkgvtntcevcdrslldsfrfcslgcKVTLITTNFNVVPFFLFG
Flexible Loop (DISEMBL)
mgpdeednrwppwLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRrssyhdvirvSEIQKVLDISGVQTYVINSARVVflnerpqprpgkgvtntCEVCDRSLLDSFRFCSLGCKVTLITTNFNVVPFFLFG
Low Complexity Region (SEG)
MGPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKVTLITTNFNVVPFFLFG
Disordered region (IsUnstruct)
*********WPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNE*******KGVTNTCEVCDRSLLDSFRFCSLGCKVTLITTNFNVVPFFLF*
Disordered Region (DISOPRED)
**************KPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFL****************EVCDRSLLDSFRFCSLGCKVTLITTNFNVVPFFLFG
Disordered Region (DISEMBL)
*********WPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKVTLITTNFNVVPFFLFG
Disordered Region (DISPRO)
*******NRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQP******TNTCEVCDRSLLDSFRFCSLGCKVTLITTNFNVVPFFLFG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKVTLITTNFNVVPFFLFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
225427189	262	PREDICTED: uncharacterized protein LOC10	0.941	0.549	0.916	3e-76
147833550	244	hypothetical protein VITISV_016796 [Viti	0.941	0.590	0.916	8e-76
357517015	235	hypothetical protein MTR_8g066820 [Medic	0.934	0.608	0.881	6e-73
449462063	241	PREDICTED: uncharacterized protein LOC10	0.947	0.601	0.882	7e-73
224071363	221	predicted protein [Populus trichocarpa]	0.941	0.651	0.881	8e-73
224138140	231	predicted protein [Populus trichocarpa]	0.941	0.623	0.888	8e-73
118488935	231	unknown [Populus trichocarpa x Populus d	0.941	0.623	0.888	8e-73
356496400	236	PREDICTED: uncharacterized protein LOC10	0.941	0.610	0.881	9e-73
356531421	236	PREDICTED: uncharacterized protein LOC10	0.934	0.605	0.881	3e-72
356498156	259	PREDICTED: uncharacterized protein LOC10	0.934	0.552	0.881	9e-72

>gi|225427189|ref|XP_002277964.1| PREDICTED: uncharacterized protein LOC100250554 [Vitis vinifera] gi|297742091|emb|CBI33878.3| unnamed protein product [Vitis vinifera]

 Score =  289 bits (740), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 132/144 (91%), Positives = 137/144 (95%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPDEEDNRWPPWLKPLLRESFFVQCKLH DSHKSECNMYCLDCMNGA CSLCL YHKDHR
Sbjct: 50  GPDEEDNRWPPWLKPLLRESFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLGYHKDHR 109

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRVSEIQKVLDI+GVQTY+INSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 110 AIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCE 169

Query: 122 RSLLDSFRFCSLGCKVTLITTNFN 145
           RSLLDSFRFCSLGCK+   +TNF 
Sbjct: 170 RSLLDSFRFCSLGCKIVGTSTNFQ 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833550|emb|CAN63851.1| hypothetical protein VITISV_016796 [Vitis vinifera]

 Score =  287 bits (735), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 132/144 (91%), Positives = 137/144 (95%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPDEEDNRWPPWLKPLLRESFFVQCKLH DSHKSECNMYCLDCMNGA CSLCL YHKDHR
Sbjct: 32  GPDEEDNRWPPWLKPLLRESFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLGYHKDHR 91

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRVSEIQKVLDI+GVQTY+INSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 92  AIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCE 151

Query: 122 RSLLDSFRFCSLGCKVTLITTNFN 145
           RSLLDSFRFCSLGCK+   +TNF 
Sbjct: 152 RSLLDSFRFCSLGCKIVGTSTNFQ 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517015|ref|XP_003628796.1| hypothetical protein MTR_8g066820 [Medicago truncatula] gi|355522818|gb|AET03272.1| hypothetical protein MTR_8g066820 [Medicago truncatula]

 Score =  278 bits (711), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 126/143 (88%), Positives = 136/143 (95%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPD+E+NRWPPWLKPLL+E FFVQCKLH DSHKSECNMYCLDCMNGA CSLCL+YHKDHR
Sbjct: 24  GPDDEENRWPPWLKPLLKERFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLNYHKDHR 83

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRV+EIQKVLDI+GVQTY+INSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 84  AIQIRRSSYHDVIRVNEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCE 143

Query: 122 RSLLDSFRFCSLGCKVTLITTNF 144
           RSLLDSFRFCSLGCK+   + NF
Sbjct: 144 RSLLDSFRFCSLGCKIVGTSMNF 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462063|ref|XP_004148761.1| PREDICTED: uncharacterized protein LOC101210628, partial [Cucumis sativus] gi|449515279|ref|XP_004164677.1| PREDICTED: uncharacterized protein LOC101223797, partial [Cucumis sativus]

 Score =  278 bits (710), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 128/145 (88%), Positives = 137/145 (94%)

Query: 1   MGPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDH 60
           MGPD+EDNRWPPWLKPLLRESFFVQCK H DSHKSECNMYCLDCMNGA CSLCL++HKDH
Sbjct: 24  MGPDDEDNRWPPWLKPLLRESFFVQCKHHIDSHKSECNMYCLDCMNGALCSLCLNFHKDH 83

Query: 61  RAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVC 120
           RAIQIRRSSYHDVIRVSEIQKVLDISGVQTY+INSARVVFLNERPQPRPGKGVTNTCEVC
Sbjct: 84  RAIQIRRSSYHDVIRVSEIQKVLDISGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVC 143

Query: 121 DRSLLDSFRFCSLGCKVTLITTNFN 145
           +RSLLDSFRFCSLGCK+   + ++ 
Sbjct: 144 ERSLLDSFRFCSLGCKIVGTSRSYQ 168

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071363|ref|XP_002303423.1| predicted protein [Populus trichocarpa] gi|222840855|gb|EEE78402.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (709), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 127/144 (88%), Positives = 135/144 (93%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPD+ED+RWPPWLKPLLRE FFVQCK+H DSHKSECNMYCLDCM+GA CSLCL YHKDHR
Sbjct: 5   GPDDEDHRWPPWLKPLLRERFFVQCKMHADSHKSECNMYCLDCMSGALCSLCLAYHKDHR 64

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRVSEIQKVLDI+GVQTYVINSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 65  AIQIRRSSYHDVIRVSEIQKVLDITGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCE 124

Query: 122 RSLLDSFRFCSLGCKVTLITTNFN 145
           RSLLDSFRFCSLGCK+   + NF 
Sbjct: 125 RSLLDSFRFCSLGCKIVGTSKNFQ 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138140|ref|XP_002326528.1| predicted protein [Populus trichocarpa] gi|222833850|gb|EEE72327.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (709), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 128/144 (88%), Positives = 133/144 (92%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPD+EDNRWPPWLKPLLRE FFVQCK H DSHKSECNMYC+DCMNGA CSLCL YHKDH 
Sbjct: 13  GPDDEDNRWPPWLKPLLRERFFVQCKQHADSHKSECNMYCMDCMNGALCSLCLAYHKDHH 72

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 73  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCE 132

Query: 122 RSLLDSFRFCSLGCKVTLITTNFN 145
           RSLLDSFRFCSLGCK+   + NF 
Sbjct: 133 RSLLDSFRFCSLGCKIVGTSKNFQ 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488935|gb|ABK96276.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  277 bits (709), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 128/144 (88%), Positives = 133/144 (92%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPD+EDNRWPPWLKPLLRE FFVQCK H DSHKSECNMYC+DCMNGA CSLCL YHKDH 
Sbjct: 13  GPDDEDNRWPPWLKPLLRERFFVQCKQHADSHKSECNMYCMDCMNGALCSLCLAYHKDHH 72

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 73  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCE 132

Query: 122 RSLLDSFRFCSLGCKVTLITTNFN 145
           RSLLDSFRFCSLGCK+   + NF 
Sbjct: 133 RSLLDSFRFCSLGCKIVGTSKNFQ 156

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496400|ref|XP_003517056.1| PREDICTED: uncharacterized protein LOC100797900 [Glycine max]

 Score =  277 bits (709), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 127/144 (88%), Positives = 135/144 (93%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPD+EDNRWPPWLKPLL+ESFFVQCKLH DSHKSECNMYCLDCMNG  CSLCL +HKDHR
Sbjct: 25  GPDDEDNRWPPWLKPLLKESFFVQCKLHADSHKSECNMYCLDCMNGPLCSLCLAHHKDHR 84

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRVSEIQKVLDI+GVQTY+INSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 85  AIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCE 144

Query: 122 RSLLDSFRFCSLGCKVTLITTNFN 145
           RSLLDSFRFCSLGCK+   + NF 
Sbjct: 145 RSLLDSFRFCSLGCKIVGTSKNFQ 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531421|ref|XP_003534276.1| PREDICTED: uncharacterized protein LOC100791221 [Glycine max]

 Score =  275 bits (704), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/143 (88%), Positives = 135/143 (94%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPD++DNRWPPWLKPLL+ESFFVQCKLH DSHKSECNMYCLDCMNG  CSLCL +HKDHR
Sbjct: 25  GPDDDDNRWPPWLKPLLKESFFVQCKLHADSHKSECNMYCLDCMNGPLCSLCLAHHKDHR 84

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRVSEIQKVLDI+GVQTY+INSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 85  AIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCE 144

Query: 122 RSLLDSFRFCSLGCKVTLITTNF 144
           RSLLDSFRFCSLGCK+   + NF
Sbjct: 145 RSLLDSFRFCSLGCKIVGTSKNF 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498156|ref|XP_003517919.1| PREDICTED: uncharacterized protein LOC100777527 [Glycine max]

 Score =  274 bits (700), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 127/144 (88%), Positives = 136/144 (94%), Gaps = 1/144 (0%)

Query: 2   GPDEEDN-RWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDH 60
           GPD+EDN RWPPWLKPLL+ESFFVQCKLH DSHKSECNMYCLDCMNGA CSLCL YHKDH
Sbjct: 54  GPDDEDNNRWPPWLKPLLKESFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLAYHKDH 113

Query: 61  RAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVC 120
           RAIQIRRSSYHDVIRV+EIQKVLDI+GVQTY+INSARVVFLNERPQPRPGKGVTNTCEVC
Sbjct: 114 RAIQIRRSSYHDVIRVNEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVC 173

Query: 121 DRSLLDSFRFCSLGCKVTLITTNF 144
           +RSLLDS+RFCSLGCK+   + NF
Sbjct: 174 ERSLLDSYRFCSLGCKIVGTSRNF 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
TAIR|locus:2141070	227	AT4G17900 [Arabidopsis thalian	0.934	0.629	0.798	2e-63
TAIR|locus:2035614	213	AT1G32700 [Arabidopsis thalian	0.921	0.661	0.823	1.4e-62
TAIR|locus:2037405	246	AT1G21000 [Arabidopsis thalian	0.895	0.556	0.697	2.4e-53
TAIR|locus:2011721	245	AT1G76590 [Arabidopsis thalian	0.895	0.559	0.687	1.9e-51
TAIR|locus:2178580	226	AT5G46710 [Arabidopsis thalian	0.869	0.588	0.649	5.4e-47
TAIR|locus:2009879	216	AT1G43000 [Arabidopsis thalian	0.875	0.620	0.619	1e-45
TAIR|locus:2057867	189	AT2G27930 [Arabidopsis thalian	0.830	0.671	0.591	4.8e-39
TAIR|locus:1009023224	256	AT2G12646 "AT2G12646" [Arabido	0.901	0.539	0.471	8.5e-33
TAIR|locus:2015761	243	AT1G31040 [Arabidopsis thalian	0.843	0.530	0.465	1.6e-29
TAIR|locus:2101881	245	AT3G60670 [Arabidopsis thalian	0.862	0.538	0.458	2.1e-29

TAIR|locus:2141070 AT4G17900 [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 115/144 (79%), Positives = 126/144 (87%)

Query:     2 GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
             GP+EE+NRWPPWLKPLL+E FFV CK H DSHKSECNMYCLDC NG  CSLCL +HKDHR
Sbjct:    25 GPEEEENRWPPWLKPLLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLAHHKDHR 84

Query:    62 AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
              IQIRRSSYHDVIRV+EIQK LDI G+QTYVINSA+VVFLNERPQPRPGKGVTNTC+VC 
Sbjct:    85 TIQIRRSSYHDVIRVNEIQKYLDIGGIQTYVINSAKVVFLNERPQPRPGKGVTNTCKVCY 144

Query:   122 RSLLD-SFRFCSLGCKVTLITTNF 144
             RSL+D SFRFCSLGCK+   +  F
Sbjct:   145 RSLVDDSFRFCSLGCKIAGTSRGF 168

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035614 AT1G32700 [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 117/142 (82%), Positives = 127/142 (89%)

Query:     1 MGPDEEDNR-WPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKD 59
             MG +EE N+ +P WLKPLLRE FFVQCKLH DSHKSECNMYCLDC NG  CSLCL +HKD
Sbjct:     1 MGAEEETNKTYPHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSFHKD 60

Query:    60 HRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEV 119
             H AIQIRRSSYHDVIRVSEIQK LDI+GVQTYVINSA+VVFLNERPQPRPGKGV NTCEV
Sbjct:    61 HHAIQIRRSSYHDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEV 120

Query:   120 CDRSLLDSFRFCSLGCKVTLIT 141
             C RSL+DSFRFCSLGCK++ I+
Sbjct:   121 CYRSLVDSFRFCSLGCKISGIS 142

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2037405 AT1G21000 [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 99/142 (69%), Positives = 118/142 (83%)

Query:     1 MGP-----DEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLD 55
             MGP     +EED   PPWL P+LR S+FV C +H DS+K+ECN++CLDC   AFCS CL 
Sbjct:     1 MGPMIRTEEEEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLV 60

Query:    56 YHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTN 115
              HKDHR +QIRRSSYH+V+RV+EIQK +DI+ VQTY+INSA++VFLNERPQPR GKGVTN
Sbjct:    61 KHKDHRVVQIRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTN 120

Query:   116 TCEVCDRSLLDSFRFCSLGCKV 137
             TCE+C RSLLDSFRFCSLGCK+
Sbjct:   121 TCEICCRSLLDSFRFCSLGCKL 142

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011721 AT1G76590 [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 99/144 (68%), Positives = 118/144 (81%)

Query:     1 MGP----DEEDN---RWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLC 53
             MGP     EEDN     PPWL P+LR ++F+ C +H  S+KSECNM+CLDC + AFCS C
Sbjct:     1 MGPMMMRAEEDNYNLNPPPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYC 60

Query:    54 LDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGV 113
             L  H++HR +QIRRSSYH+V+RV+EIQK +DIS VQTY+INSAR+VFLNERPQPR GKGV
Sbjct:    61 LLNHRNHRVLQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGV 120

Query:   114 TNTCEVCDRSLLDSFRFCSLGCKV 137
             TNTCE+C RSLLDSFRFCSLGCK+
Sbjct:   121 TNTCEICCRSLLDSFRFCSLGCKL 144

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2178580 AT5G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 87/134 (64%), Positives = 105/134 (78%)

Query:     5 EEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQ 64
             E +N+WP WLKPLL + FF QCK H    ++EC MYCLDC N +FCSLCL  H++HR IQ
Sbjct:    22 EGENQWPIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLSEHENHRTIQ 81

Query:    65 IRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSL 124
             IR SSYH+V +V EIQK LDIS +QTYVINS++V+FLNERPQ +PGKG TN C VC R L
Sbjct:    82 IRISSYHNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKGFTNACMVCYRGL 141

Query:   125 LDS-FRFCSLGCKV 137
              ++ FRFCS+GCKV
Sbjct:   142 AENCFRFCSIGCKV 155

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009879 AT1G43000 [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 83/134 (61%), Positives = 103/134 (76%)

Query:     4 DEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAI 63
             + +D   PPWL P+LR  +FV C +H  S KSECN++CLDC   AFCS CL +H+ HR I
Sbjct:     2 ENDDVMTPPWLTPMLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLAHHRTHRVI 61

Query:    64 QIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRS 123
             QIRRSSYH+V+RVSEIQK +DIS +QTYVINSA++ FLN RPQ R GK +  TC++C R+
Sbjct:    62 QIRRSSYHNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGKSLNKTCQICSRN 121

Query:   124 LLDSFRFCSLGCKV 137
             LLDSF FCSL CK+
Sbjct:   122 LLDSFLFCSLACKL 135

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057867 AT2G27930 [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 81/137 (59%), Positives = 97/137 (70%)

Query:    11 PPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAIQIRRSS 69
             P WL+ LLR +FF  C  H ++ ++ECNM+CL C N AFC  C   +H DH  +QIRRSS
Sbjct:     4 PKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSS 63

Query:    70 YHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGK-GVTNT--------CEVC 120
             YHDV+RVSEI+  LDI GVQTYVINSARV+FLNERPQP+    G  ++        CE C
Sbjct:    64 YHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETC 123

Query:   121 DRSLLDSFRFCSLGCKV 137
              R+LLD FRFCSLGCKV
Sbjct:   124 CRTLLDPFRFCSLGCKV 140

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023224 AT2G12646 "AT2G12646" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 66/140 (47%), Positives = 89/140 (63%)

Query:    11 PPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSY 70
             P WL  L  E FFV C  H  + K+E N+ CLDC   + C  C+  H+ HR +Q+RR  Y
Sbjct:     6 PAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCCT-SLCPHCVPSHRFHRLLQVRRYVY 64

Query:    71 HDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRF 130
             HDV+R+ ++QK++D S VQ Y INSA+VVF+ +RPQ R  KG  N C  CDRSL + +  
Sbjct:    65 HDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQEPYIH 124

Query:   131 CSLGCKVTLITTNF-NVVPF 149
             CSLGCKV  +   + ++ PF
Sbjct:   125 CSLGCKVDFVMKRYRDITPF 144

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015761 AT1G31040 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 61/131 (46%), Positives = 84/131 (64%)

Query:    11 PPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSY 70
             P WL+ L+ E+FF  C +H    KSE N++CL C     C  CL  H+ H  +Q+RR  Y
Sbjct:    19 PAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCLSV-CPHCLPSHRSHPLLQVRRYVY 77

Query:    71 HDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRF 130
             HDV+R+S+++K++D S VQ Y IN A+V+FLN+R Q R  K  +N C  CDR L + F F
Sbjct:    78 HDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSR-AKVSSNVCFTCDRILQEPFHF 136

Query:   131 CSLGCKVTLIT 141
             CSL CKV  ++
Sbjct:   137 CSLSCKVDYLS 147

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101881 AT3G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 61/133 (45%), Positives = 81/133 (60%)

Query:     6 EDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQI 65
             E   +P WL+ LL++ FF  C  H D  K+E N+ C+DC     C  CL  H  HR +QI
Sbjct:     2 ESGEFPAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCCL-TICPHCLSSHTSHRLLQI 60

Query:    66 RRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLL 125
             RR  Y DV+RV +  K++D S +Q Y  NS++VVF+NERPQ R  +G  N C  CDRSL 
Sbjct:    61 RRYVYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRSLQ 120

Query:   126 DSFRFCSLGCKVT 138
               + FC L CK++
Sbjct:   121 SPYLFCCLSCKIS 133

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	153
pfam04640	72	pfam04640, PLATZ, PLATZ transcription factor	5e-46

>gnl|CDD|191051 pfam04640, PLATZ, PLATZ transcription factor

 Score =  144 bits (364), Expect = 5e-46
 Identities = 61/72 (84%), Positives = 66/72 (91%)

Query: 66  RRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLL 125
           RRSSYHDV+RVS+IQK++DISGVQTYVINSA+VVFLNERPQ RPGKG  N CE CDRSLL
Sbjct: 1   RRSSYHDVVRVSDIQKLIDISGVQTYVINSAKVVFLNERPQSRPGKGSGNICETCDRSLL 60

Query: 126 DSFRFCSLGCKV 137
           D FRFCSLGCKV
Sbjct: 61  DPFRFCSLGCKV 72

Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
PF04640	72	PLATZ: PLATZ transcription factor; InterPro: IPR00	100.0
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.79
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	95.68
smart00336	42	BBOX B-Box-type zinc finger.	94.77
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	88.25
PRK01343	57	zinc-binding protein; Provisional	85.41
PRK00418	62	DNA gyrase inhibitor; Reviewed	84.77
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	82.19
COG3024	65	Uncharacterized protein conserved in bacteria [Fun	81.75

>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins

Probab=100.00  E-value=2.8e-42  Score=242.15  Aligned_cols=72  Identities=74%  Similarity=1.225  Sum_probs=71.1

Q ss_pred             EeccccceeEecccccceeccceeeEEECCeEEEEeeCCCCCCCCCCCCCcccccccccCCCCeeeecccee
Q 031802           66 RRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKV  137 (153)
Q Consensus        66 RR~sY~dVVrv~diqkl~D~S~IQtYviNs~kVVfLn~RPq~r~~kg~~~~C~~C~R~L~d~~~FCSl~CKv  137 (153)
                      |||||||||||+||||+||||+||||+|||+||||||+|||++++++.++.|++|+|+|+|+++||||+|||
T Consensus         1 Rr~sY~dVVrv~di~kl~D~s~IQtY~iNs~kVVfLn~Rpq~~~~~~~~~~C~~C~R~L~d~~~fCSl~CKv   72 (72)
T PF04640_consen    1 RRYSYHDVVRVSDIQKLLDCSGIQTYVINSAKVVFLNPRPQSRPSKGSGNICETCHRSLQDPYRFCSLSCKV   72 (72)
T ss_pred             CcccccceEEHHHhHhhccccccEEEEeCCceEEEEccCCcCCCCCCCCCccCCCCCCCCCCCeEEeeeEEC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999997

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.79  E-value=0.00038  Score=42.70  Aligned_cols=37  Identities=35%  Similarity=0.874  Sum_probs=28.9

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCccccc-CCCCCceEEE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAIQI   65 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hr~lQI   65 (153)
                      .|..|.+   .+.++||.+|.. ++|..|.. .|++|+++.|
T Consensus         5 ~C~~H~~---~~~~~~C~~C~~-~~C~~C~~~~H~~H~~~~i   42 (42)
T PF00643_consen    5 KCPEHPE---EPLSLFCEDCNE-PLCSECTVSGHKGHKIVPI   42 (42)
T ss_dssp             B-SSTTT---SBEEEEETTTTE-EEEHHHHHTSTTTSEEEEC
T ss_pred             cCccCCc---cceEEEecCCCC-ccCccCCCCCCCCCEEeEC
Confidence            5888864   338899999975 89999985 4999987754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=95.68  E-value=0.0084  Score=35.56  Aligned_cols=36  Identities=22%  Similarity=0.543  Sum_probs=27.2

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc-cCCCCCceEE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL-DYHKDHRAIQ   64 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~~H~~Hr~lQ   64 (153)
                      .|+.|..   +...+||.+|.. .+|..|. ..|++|.++-
T Consensus         2 ~C~~H~~---~~~~~fC~~~~~-~iC~~C~~~~H~~H~~~~   38 (39)
T cd00021           2 LCDEHGE---EPLSLFCETDRA-LLCVDCDLSVHSGHRRVP   38 (39)
T ss_pred             CCCccCC---cceEEEeCccCh-hhhhhcChhhcCCCCEee
Confidence            4777743   236899999975 8999997 4588887654

>smart00336 BBOX B-Box-type zinc finger

Probab=94.77  E-value=0.029  Score=33.66  Aligned_cols=35  Identities=26%  Similarity=0.795  Sum_probs=27.0

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCccccc-CCCCCceE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAI   63 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hr~l   63 (153)
                      .|+.|.+   ....+||.+|.. .+|..|.. .|++|+++
T Consensus         5 ~C~~h~~---~~~~~~C~~c~~-~iC~~C~~~~H~~H~~~   40 (42)
T smart00336        5 KCDSHGD---EPAEFFCEECGA-LLCRTCDEAEHRGHTVV   40 (42)
T ss_pred             cCCCCCC---CceEEECCCCCc-ccccccChhhcCCCcee
Confidence            4777754   335899999975 89999985 58899865

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=88.25  E-value=0.098  Score=33.54  Aligned_cols=29  Identities=28%  Similarity=0.649  Sum_probs=24.2

Q ss_pred             CCccccccccc---CCCCeeeeccceeceeec
Q 031802          114 TNTCEVCDRSL---LDSFRFCSLGCKVTLITT  142 (153)
Q Consensus       114 ~~~C~~C~R~L---~d~~~FCSl~CKv~~~~~  142 (153)
                      .+.|.+|+|-.   .+...|||-+|++.+..+
T Consensus         6 ~~yC~~Cdk~~~~~~~~~lYCSe~Cr~~D~~~   37 (43)
T PF12855_consen    6 NDYCIVCDKQIDPPDDGSLYCSEECRLKDQEK   37 (43)
T ss_pred             hhHHHHhhccccCCCCCccccCHHHHhHhhhc
Confidence            45799999999   668899999999976554

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PRK01343 zinc-binding protein; Provisional

Probab=85.41  E-value=0.37  Score=32.75  Aligned_cols=27  Identities=26%  Similarity=0.573  Sum_probs=21.4

Q ss_pred             CCcccccccccCCCC-eeeeccceecee
Q 031802          114 TNTCEVCDRSLLDSF-RFCSLGCKVTLI  140 (153)
Q Consensus       114 ~~~C~~C~R~L~d~~-~FCSl~CKv~~~  140 (153)
                      ...|-+|++.....+ -|||-.|+..+.
T Consensus         9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDL   36 (57)
T PRK01343          9 TRPCPECGKPSTREAYPFCSERCRDIDL   36 (57)
T ss_pred             CCcCCCCCCcCcCCCCcccCHHHhhhhH
Confidence            357999999887655 699999998543

>PRK00418 DNA gyrase inhibitor; Reviewed

Probab=84.77  E-value=0.49  Score=32.65  Aligned_cols=26  Identities=35%  Similarity=0.790  Sum_probs=20.4

Q ss_pred             CCcccccccccC---C-CCe-eeeccceece
Q 031802          114 TNTCEVCDRSLL---D-SFR-FCSLGCKVTL  139 (153)
Q Consensus       114 ~~~C~~C~R~L~---d-~~~-FCSl~CKv~~  139 (153)
                      +..|-+|++...   + +|+ |||-.||+.+
T Consensus         6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~ID   36 (62)
T PRK00418          6 TVNCPTCGKPVEWGEISPFRPFCSKRCQLID   36 (62)
T ss_pred             cccCCCCCCcccccCCCCcCCcccHHHHhhh
Confidence            457999999874   3 574 9999999854

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=82.19  E-value=0.21  Score=33.86  Aligned_cols=26  Identities=35%  Similarity=0.823  Sum_probs=16.1

Q ss_pred             CcccccccccCC----CCe-eeeccceecee
Q 031802          115 NTCEVCDRSLLD----SFR-FCSLGCKVTLI  140 (153)
Q Consensus       115 ~~C~~C~R~L~d----~~~-FCSl~CKv~~~  140 (153)
                      ..|-+|++...-    +++ |||-.||+.+.
T Consensus         3 v~CP~C~k~~~~~~~n~~rPFCS~RCk~iDL   33 (57)
T PF03884_consen    3 VKCPICGKPVEWSPENPFRPFCSERCKLIDL   33 (57)
T ss_dssp             EE-TTT--EEE-SSSSS--SSSSHHHHHHHH
T ss_pred             ccCCCCCCeecccCCCCcCCcccHhhcccCH
Confidence            469999998875    676 99999998543

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.75  E-value=0.46  Score=33.13  Aligned_cols=27  Identities=37%  Similarity=0.850  Sum_probs=21.0

Q ss_pred             CCcccccccccCC----CCe-eeeccceecee
Q 031802          114 TNTCEVCDRSLLD----SFR-FCSLGCKVTLI  140 (153)
Q Consensus       114 ~~~C~~C~R~L~d----~~~-FCSl~CKv~~~  140 (153)
                      +..|-+|++...-    +|| |||-.||+-+.
T Consensus         7 ~v~CP~Cgkpv~w~~~s~frPFCSkRCklIDL   38 (65)
T COG3024           7 TVPCPTCGKPVVWGEESPFRPFCSKRCKLIDL   38 (65)
T ss_pred             cccCCCCCCcccccccCCcCcchhHhhhhcch
Confidence            3469999998864    665 99999998543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 33/131 (25%)

Query: 32  SHKSECNMYCLDCMNGAF---CSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGV 88
           S+K +C M         F      C   +     +++ +   + +          D S  
Sbjct: 173 SYKVQCKMD-----FKIFWLNLKNC---NSPETVLEMLQKLLYQI--DPNWTSRSDHSSN 222

Query: 89  QTYVINSARVV---FLNERPQPRPGKGVTNTC-----EVCDRSLLDSFRFCSLGCKVTLI 140
               I+S +      L  +P           C      V +    ++F   +L CK  L+
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYEN--------CLLVLLNVQNAKAWNAF---NLSCK-ILL 270

Query: 141 TTNFNVVPFFL 151
           TT F  V  FL
Sbjct: 271 TTRFKQVTDFL 281

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	95.87
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	95.65
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	95.58
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	94.48
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	93.96
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	93.11
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	92.36
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	91.78
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	91.55
2w0t_A	43	Lethal(3)malignant brain tumor-like 2 protein; zin	89.27
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	88.68
2das_A	62	Zinc finger MYM-type protein 5; trash domain, stru	88.63

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.87  E-value=0.006  Score=39.20  Aligned_cols=35  Identities=40%  Similarity=0.847  Sum_probs=28.0

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAI   63 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~l   63 (153)
                      .|+.|.+.   ..++||.+|.. .+|..|.  ..|++|+++
T Consensus        10 ~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~   46 (64)
T 2d8u_A           10 MCKEHEDE---KINIYCLTCEV-PTCSMCKVFGIHKACEVA   46 (64)
T ss_dssp             CCSSCTTC---CCCSEESSSCC-CCCSHHHHSSSTTSSCEE
T ss_pred             cCcCcCCC---ccceEcCcCCc-eeCccccCCCcCCCCCee
Confidence            59999542   37799999974 8999996  489999765

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=95.65  E-value=0.0039  Score=38.50  Aligned_cols=36  Identities=28%  Similarity=0.637  Sum_probs=28.1

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc-cCCCCCceEE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL-DYHKDHRAIQ   64 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~~H~~Hr~lQ   64 (153)
                      .|+.|++.   ..++||.+|.. .+|..|. ..|++|+++-
T Consensus         8 ~C~~H~~e---~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~   44 (50)
T 2yvr_A            8 YCNVHKHE---PLVLFCESCDT-LTCRDCQLNAHKDHQYQF   44 (50)
T ss_dssp             BCSSSTTC---BCCEEETTTTE-EECHHHHHTTTTTCCEEE
T ss_pred             cCcCCCCC---CEEEEeCCCCE-EEecccCCCcCCCCceec
Confidence            48988542   37899999974 8999996 5788997653

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=95.58  E-value=0.0055  Score=37.64  Aligned_cols=38  Identities=37%  Similarity=0.778  Sum_probs=29.5

Q ss_pred             ccCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceEEE
Q 031802           24 VQCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAIQI   65 (153)
Q Consensus        24 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~lQI   65 (153)
                      ..|+.|..   ...++||.+|. .++|..|.  ..|++|+++.|
T Consensus         7 ~~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l   46 (48)
T 3ddt_A            7 PMCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAPL   46 (48)
T ss_dssp             CBCSSSTT---SBCCEEETTTT-EEECHHHHHHSTTTTSCEEEC
T ss_pred             CcCCCCCC---ccccEEcCCCC-eeEcccccCCCcCCCCcEEeC
Confidence            46898863   23679999997 48999996  47999987653

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=94.48  E-value=0.023  Score=33.71  Aligned_cols=34  Identities=26%  Similarity=0.583  Sum_probs=27.3

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAI   63 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~l   63 (153)
                      .|..|.    ....+||.++.. .+|..|.  ..|++|+++
T Consensus         5 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~   40 (42)
T 1fre_A            5 KCSEHD----ERLKLYCKDDGT-LSCVICRDSLKHASHNFL   40 (42)
T ss_dssp             CCCSSC----SSCCCCCCSSSS-SSCCTTSSCSSCTTCCCC
T ss_pred             cchhhC----CeeeEEeCCCCe-EEeccCCCCCCCCCCcEe
Confidence            588885    247799999974 8999997  479999875

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=93.96  E-value=0.032  Score=34.73  Aligned_cols=36  Identities=22%  Similarity=0.690  Sum_probs=28.6

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceEEE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAIQI   65 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~lQI   65 (153)
                      .|+.|.    ....+||.+|.. .+|..|.  ..|++|+++-|
T Consensus        10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   47 (53)
T 2did_A           10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL   47 (53)
T ss_dssp             BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred             cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence            599995    347799999974 8999996  47999987644

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=93.11  E-value=0.027  Score=37.96  Aligned_cols=37  Identities=32%  Similarity=0.775  Sum_probs=28.7

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceEEE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAIQI   65 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~lQI   65 (153)
                      .|+.|...   ..++||.+|.. .+|..|.  ..|++|+++-|
T Consensus        20 ~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   58 (84)
T 2dja_A           20 TCLDHENE---KVNMYCVSDDQ-LICALCKLVGRHRDHQVASL   58 (84)
T ss_dssp             CCSSCSSS---CCCEEETTTTE-EECHHHHHTSTTTTCCBCCC
T ss_pred             cCcCcCCc---cccEEcCCCCc-eEcccCcCCCCCCCCCccCH
Confidence            59999532   27799999974 8999996  57999986643

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.36  E-value=0.077  Score=34.02  Aligned_cols=36  Identities=22%  Similarity=0.601  Sum_probs=28.9

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceEEE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAIQI   65 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~lQI   65 (153)
                      .|..|..    ...+||.++.. .+|..|.  ..|++|+++-|
T Consensus        16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l   53 (59)
T 2yrg_A           16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT   53 (59)
T ss_dssp             BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred             cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence            5999963    47799999974 8999997  47999987654

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=91.78  E-value=0.076  Score=34.96  Aligned_cols=35  Identities=26%  Similarity=0.773  Sum_probs=27.9

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc-cCCCCCceEE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL-DYHKDHRAIQ   64 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~~H~~Hr~lQ   64 (153)
                      .|+.|.    ...++||.+|.. .+|..|. ..|++|+++-
T Consensus        20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~   55 (72)
T 2csv_A           20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVT   55 (72)
T ss_dssp             BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEE
T ss_pred             cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEec
Confidence            699994    247799999974 8999997 5789997654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=91.55  E-value=0.053  Score=37.32  Aligned_cols=36  Identities=36%  Similarity=0.805  Sum_probs=28.3

Q ss_pred             ccCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceE
Q 031802           24 VQCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAI   63 (153)
Q Consensus        24 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~l   63 (153)
                      ..|+.|.+.   ..++||.+|.. .+|..|.  ..|++|+++
T Consensus        60 ~~C~~H~~e---~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~   97 (101)
T 2jun_A           60 LMCLEHEDE---KVNMYCVTDDQ-LICALCKLVGRHRDHQVA   97 (101)
T ss_dssp             CCCSSCSSS---CCCEEETTTTE-EECHHHHHHTTTSSSCBC
T ss_pred             CcCcCcCCC---cceEECCCCCC-ccchhcCCCCCcCCCCee
Confidence            369988542   37899999974 8999996  589999865

>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}

Probab=89.27  E-value=0.079  Score=33.26  Aligned_cols=25  Identities=32%  Similarity=0.797  Sum_probs=18.1

Q ss_pred             CCCCcccccccc-cCC-----CCeeeeccce
Q 031802          112 GVTNTCEVCDRS-LLD-----SFRFCSLGCK  136 (153)
Q Consensus       112 g~~~~C~~C~R~-L~d-----~~~FCSl~CK  136 (153)
                      +....||.|++. ...     +-||||++|-
T Consensus         4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca   34 (43)
T 2w0t_A            4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS   34 (43)
T ss_dssp             CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred             CceehhhhhcCcchhhhhccCCcceechhhh
Confidence            345689999984 333     3489999994

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.68  E-value=0.05  Score=34.75  Aligned_cols=35  Identities=26%  Similarity=0.603  Sum_probs=27.9

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceEE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAIQ   64 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~lQ   64 (153)
                      .|..|.    ....+||.++.. .+|..|.  ..|++|+++.
T Consensus        20 ~C~~H~----e~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~   56 (57)
T 2egm_A           20 ICPKHQ----EALKLFCEVDEE-AICVVCRESRSHKQHSVVP   56 (57)
T ss_dssp             BCTTTC----CBCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred             cChhhC----ceeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence            599994    247799999974 8999997  4799998763

>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17

Probab=88.63  E-value=0.3  Score=32.73  Aligned_cols=32  Identities=28%  Similarity=0.560  Sum_probs=25.1

Q ss_pred             CCCCCCCCCcccccccccCC----------CCeeeeccceec
Q 031802          107 PRPGKGVTNTCEVCDRSLLD----------SFRFCSLGCKVT  138 (153)
Q Consensus       107 ~r~~kg~~~~C~~C~R~L~d----------~~~FCSl~CKv~  138 (153)
                      .++.+....+|+.|.+.|+.          +-.|||..|-..
T Consensus        13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~   54 (62)
T 2das_A           13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSS   54 (62)
T ss_dssp             CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHH
T ss_pred             cCCCCccccChhhccchhhcCceeeeecCchhheechHHHcc
Confidence            55666677899999999984          347999999653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	153
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	96.62
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	96.16
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	96.1
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.96
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	95.86
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	95.3
d1lv3a_	65	Hypothetical zinc finger protein YacG {Escherichia	83.89

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00069  Score=41.57  Aligned_cols=35  Identities=40%  Similarity=0.847  Sum_probs=27.6

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAI   63 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~l   63 (153)
                      .|+.|++.   ..++||.+|.. ++|..|.  ..|++|++.
T Consensus         3 ~C~~H~~e---~l~~yC~~c~~-~iC~~C~~~~~Hk~H~v~   39 (51)
T d2d8ua1           3 MCKEHEDE---KINIYCLTCEV-PTCSMCKVFGIHKACEVA   39 (51)
T ss_dssp             CCSSCTTC---CCCSEESSSCC-CCCSHHHHSSSTTSSCEE
T ss_pred             CCcccCcC---cceEEcCCCCc-eECccccCcCCcCcCcCc
Confidence            58888642   36899999974 9999995  479999765

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.00067  Score=43.59  Aligned_cols=38  Identities=32%  Similarity=0.737  Sum_probs=29.2

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceEEEE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAIQIR   66 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~lQIR   66 (153)
                      .|+.|.+..   .++||.+|. ..+|..|.  ..|++|.+.-|.
T Consensus        13 ~C~~H~~e~---l~~fC~~C~-~~iC~~C~~~~~Hk~H~~~~i~   52 (71)
T d2djaa1          13 TCLDHENEK---VNMYCVSDD-QLICALCKLVGRHRDHQVASLN   52 (71)
T ss_dssp             CCSSCSSSC---CCEEETTTT-EEECHHHHHTSTTTTCCBCCCC
T ss_pred             cCcccCCcc---ceeEcCCCC-ceeccccccCCCCCCCcCcCHH
Confidence            599996422   689999997 48999995  369999876544

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.10  E-value=0.0021  Score=37.65  Aligned_cols=34  Identities=26%  Similarity=0.607  Sum_probs=27.4

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAI   63 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~l   63 (153)
                      .|+.|..    ..++||.+|.. .+|..|.  ..|++|+++
T Consensus         2 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~   37 (39)
T d1frea_           2 KCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFL   37 (39)
T ss_dssp             CCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCC
T ss_pred             CCcccCc----ceeEEcccCCc-EeeccCcCCCCcCCCcEe
Confidence            5888843    47899999974 8999996  369999875

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.00074  Score=40.88  Aligned_cols=35  Identities=37%  Similarity=0.811  Sum_probs=27.6

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAI   63 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~l   63 (153)
                      .|+.|++   .+.++||.+|.. ++|..|.  ..|++|.+.
T Consensus         7 ~C~~H~~---e~l~~yC~~C~~-~iC~~C~~~~~H~~H~~~   43 (47)
T d2dq5a1           7 MCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVA   43 (47)
T ss_dssp             BCSSCTT---SBEEEEETTTTE-EEEHHHHHTSSTTSSCCC
T ss_pred             cchhhCC---CcceEEcCCCCc-cCCccCcCcCCcCCCeEe
Confidence            4888854   236899999974 9999995  379999764

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0014  Score=41.16  Aligned_cols=36  Identities=25%  Similarity=0.784  Sum_probs=28.9

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc-cCCCCCceEEE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL-DYHKDHRAIQI   65 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~~H~~Hr~lQI   65 (153)
                      .|+.|..    ...+||.+|.. .+|..|+ ..|++|.++.|
T Consensus        13 ~C~~H~e----~l~lyC~~c~~-~iC~~C~~~~H~~H~~~~l   49 (59)
T d2csva1          13 KCPVHGK----TMELFCQTDQT-CICYLCMFQEHKNHSTVTV   49 (59)
T ss_dssp             BCTTTCC----BCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred             chhhhCC----ccceECCCCCc-eECcccCcccCCCCCeeCH
Confidence            6999942    47799999974 8999997 47999987643

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.005  Score=36.04  Aligned_cols=34  Identities=24%  Similarity=0.729  Sum_probs=27.7

Q ss_pred             cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceE
Q 031802           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAI   63 (153)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~l   63 (153)
                      .|+.|..    ..++||.+|.. .+|..|.  ..|++|+++
T Consensus         3 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~   38 (40)
T d2dida1           3 LCPQHHE----ALSLFCYEDQE-AVCLICAISHTHRAHTVV   38 (40)
T ss_dssp             BCTTTCC----BCCEEESSSCS-EECHHHHTSSTTTTSCEE
T ss_pred             cchhhCc----cceEEcccCCc-EeeccCcCCCCcCCCcEe
Confidence            5888843    47899999974 8999996  379999876

>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Hypothetical zinc finger protein YacG
domain: Hypothetical zinc finger protein YacG
species: Escherichia coli [TaxId: 562]

Probab=83.89  E-value=0.096  Score=33.69  Aligned_cols=27  Identities=33%  Similarity=0.869  Sum_probs=20.5

Q ss_pred             CCCcccccccccC---C-CCe-eeeccceece
Q 031802          113 VTNTCEVCDRSLL---D-SFR-FCSLGCKVTL  139 (153)
Q Consensus       113 ~~~~C~~C~R~L~---d-~~~-FCSl~CKv~~  139 (153)
                      .+..|-+|++...   + +|+ |||-.||+-+
T Consensus         5 ~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~ID   36 (65)
T d1lv3a_           5 ITVNCPTCGKTVVWGEISPFRPFCSKRCQLID   36 (65)
T ss_dssp             CEEECTTTCCEEECSSSSSCCSSSSHHHHHHH
T ss_pred             ceeeCCCCCCccccCCCCCcCCchhHhhhhcc
Confidence            3457999999773   3 565 9999999854