Citrus Sinensis ID: 031810

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLWLDLASDAVLSVDHHYK
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHHccccccccccccccccHHcccccccccHHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHccccHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcHHHHHHHccccHHHHccccccHHHHHcccc
Coil and Loop (DISEMBL)
mdvnvaawgpkskgvtplhlaaqgGHLEVMDVLLERgadidartkgacgwtplhTAAKERKKEAVRFLIEngaflpddindsrfnpplhycpslEWAYEEMMRFQresfsagetsyssEKLNALSRLLVHMMPLLWLDLASDAVLSVDHHYK
Flexible Loop (DISEMBL)
mdvnvaawgpkskgvtplhlaaqGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAflpddindsrfNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLWLDLASDAVLSVDHHYK
Low Complexity Region (SEG)
MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLWLDLASDAVLSVDHHYK
Disordered region (IsUnstruct)
*************GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQ**************KLNALSRLLVHMMPLLWLDLASDAVLSV*****
Disordered Region (DISOPRED)
MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLWLDLASDAVL*******
Disordered Region (DISEMBL)
MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQR************EKLNALSRLLVHMMPLLWLDLASDAVLSVDHHYK
Disordered Region (DISPRO)
****VAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLWLDLASDAVLSVDHHYK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLWLDLASDAVLSVDHHYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.388	0.030	0.475	7e-09
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.407	0.015	0.484	3e-08
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.388	0.013	0.459	4e-08
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.427	0.034	0.458	5e-08
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.388	0.015	0.459	6e-08
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.427	0.034	0.444	6e-08
Q21920	2620	Ankyrin repeat and KH dom	no	no	0.414	0.024	0.382	8e-08
Q9J4Z5	436	Putative ankyrin repeat p	N/A	no	0.559	0.194	0.325	1e-07
Q8NFD2	765	Ankyrin repeat and protei	no	no	0.407	0.081	0.468	1e-07
Q7TQP6	835	Serine/threonine-protein	no	no	0.486	0.088	0.394	1e-07

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           KG T LH+A+  G  EV+ VL+  GA+++A+++   G+TPL+ AA+E   E VRFL++NG
Sbjct: 89  KGNTALHIASLAGQAEVVKVLVTNGANVNAQSQN--GFTPLYMAAQENHLEVVRFLLDNG 146

Query: 73  A 73
           A
Sbjct: 147 A 147

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.
Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G+TPLH AA+ GH +V+++LLERGA + ARTK   G +PLH AA+    E V+ L+++ A
Sbjct: 299 GLTPLHCAARSGHDQVVELLLERGAPLLARTKN--GLSPLHMAAQGDHVECVKHLLQHKA 356

Query: 74  FLPD 77
            + D
Sbjct: 357 PVDD 360

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           KG T LH+A+  G  EV+ VL+  GA+++A+++   G+TPL+ AA+E   E V+FL++NG
Sbjct: 106 KGNTALHIASLAGQAEVVKVLVTNGANVNAQSQN--GFTPLYMAAQENHLEVVKFLLDNG 163

Query: 73  A 73
           A
Sbjct: 164 A 164

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 7/72 (9%)

Query: 9   GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
           G KS G+TPLHL AQ GH+ V DVL++ G  +DA T+   G+TPLH A+     + V+FL
Sbjct: 664 GNKS-GLTPLHLVAQEGHVPVADVLIKHGVMVDATTR--MGYTPLHVASHYGNIKLVKFL 720

Query: 69  IENGAFLPDDIN 80
           +++ A    D+N
Sbjct: 721 LQHQA----DVN 728

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 45/61 (73%), Gaps = 2/61 (3%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           KG T LH+A+  G  EV+ VL++ GA+I+A+++   G+TPL+ AA+E   + V++L+ENG
Sbjct: 96  KGNTALHIASLAGQAEVVKVLVKEGANINAQSQN--GFTPLYMAAQENHIDVVKYLLENG 153

Query: 73  A 73
           A
Sbjct: 154 A 154

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 7/72 (9%)

Query: 9   GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
           G KS G+TPLHL +Q GH+ V DVL++ G  +DA T+   G+TPLH A+     + V+FL
Sbjct: 660 GNKS-GLTPLHLVSQEGHVPVADVLIKHGVTVDATTR--MGYTPLHVASHYGNIKLVKFL 716

Query: 69  IENGAFLPDDIN 80
           +++ A    D+N
Sbjct: 717 LQHQA----DVN 724

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q21920|ANKHM_CAEEL Ankyrin repeat and KH domain-containing protein R11A8.7 OS=Caenorhabditis elegans GN=R11A8.7 PE=2 SV=3

 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 44/68 (64%)

Query: 16   TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
            TPL LA+ GG++E++++LL  G++I++RT    G +PL  A+    +EA R L+E G+ +
Sbjct: 1337 TPLSLASSGGYIEIVNMLLTAGSEINSRTGSKLGISPLMLASMNGHREATRVLLEKGSDI 1396

Query: 76   PDDINDSR 83
               I  +R
Sbjct: 1397 NAQIETNR 1404

Caenorhabditis elegans (taxid: 6239)

>sp|Q9J4Z5|V245_FOWPN Putative ankyrin repeat protein FPV245 OS=Fowlpox virus (strain NVSL) GN=FPV245 PE=4 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           +D  V      +K  T LH A +   LEV+ +L E GAD++ +    C   P+H A +  
Sbjct: 111 LDSGVKVNTKNAKSKTFLHYAIKNNDLEVIKMLFEYGADVNIKDDNGC--YPIHIATRSN 168

Query: 61  KKEAVRFLIENGAFLPDDINDSRFNPPLH 89
             E ++ L+E GA+   ++ D+  N PLH
Sbjct: 169 SYEIIKLLLEKGAYA--NVKDNYGNSPLH 195

Vertebrata (taxid: 7742)

>sp|Q8NFD2|ANKK1_HUMAN Ankyrin repeat and protein kinase domain-containing protein 1 OS=Homo sapiens GN=ANKK1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 10  PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
           P  +G TPLHLAA  GHLE++ +L E  A++ A   GA  WTPLH AA+  ++  V  L+
Sbjct: 589 PTHQGWTPLHLAAYKGHLEIIHLLAESHANMGAL--GAVNWTPLHLAARHGEEAVVSALL 646

Query: 70  ENGA 73
           + GA
Sbjct: 647 QCGA 650

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q7TQP6|TNI3K_RAT Serine/threonine-protein kinase TNNI3K OS=Rattus norvegicus GN=Tnni3k PE=2 SV=3

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 16  TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
           TPLH+AA  GH +V  VLL+ GAD++    G  G  PLH A+ +     V+ L+E G+  
Sbjct: 169 TPLHIAAYYGHEQVTSVLLKFGADVN--VSGEVGDRPLHLASAKGFFNIVKLLVEEGSKA 226

Query: 76  PDDINDSRFNPPLHYC 91
             +  D+  + PLH+C
Sbjct: 227 DVNAQDNEDHVPLHFC 242

May play a role in cardiac physiology.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
224074561	174	predicted protein [Populus trichocarpa]	0.776	0.678	0.864	1e-55
359806825	172	uncharacterized protein LOC100818162 [Gl	0.782	0.691	0.831	3e-55
255582209	177	ankyrin repeat-containing protein, putat	0.782	0.672	0.857	1e-54
224138388	176	predicted protein [Populus trichocarpa]	0.782	0.676	0.848	4e-54
358248382	172	uncharacterized protein LOC100814428 [Gl	0.782	0.691	0.823	6e-54
225427572	174	PREDICTED: ankyrin-2 [Vitis vinifera] gi	0.782	0.683	0.834	3e-52
357484571	203	Ankyrin repeat domain-containing protein	0.789	0.591	0.8	2e-51
449462509	173	PREDICTED: ankyrin-3-like [Cucumis sativ	0.710	0.624	0.833	3e-49
125537689	166	hypothetical protein OsI_05465 [Oryza sa	0.776	0.710	0.798	6e-49
115443637	166	Os02g0102600 [Oryza sativa Japonica Grou	0.776	0.710	0.789	2e-48

>gi|224074561|ref|XP_002304390.1| predicted protein [Populus trichocarpa] gi|222841822|gb|EEE79369.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/118 (86%), Positives = 109/118 (92%)

Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           MDVNV AWGPKSKG+TPLHLAAQGGHLE+M  LLERGA+IDART GACGWTPLH+AAKER
Sbjct: 57  MDVNVPAWGPKSKGLTPLHLAAQGGHLEIMAELLERGANIDARTLGACGWTPLHSAAKER 116

Query: 61  KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSS 118
           KKEAV+FLIENGAFLPDDINDSRFNPPLHYCP LEWAYEEM R QRE+ S+GE SYSS
Sbjct: 117 KKEAVKFLIENGAFLPDDINDSRFNPPLHYCPGLEWAYEEMKRHQRENLSSGEASYSS 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806825|ref|NP_001241566.1| uncharacterized protein LOC100818162 [Glycine max] gi|255647501|gb|ACU24214.1| unknown [Glycine max]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 99/119 (83%), Positives = 111/119 (93%)

Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           MDVNV+AWGPKSKGVTPLHLAA+GGH+ VMDVLLERGADIDARTKGACGWTPLH AAKER
Sbjct: 53  MDVNVSAWGPKSKGVTPLHLAAEGGHIGVMDVLLERGADIDARTKGACGWTPLHIAAKER 112

Query: 61  KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSE 119
           +++AV+FL+ENGAF+P DI+DSRFNPPLHYCP LEWAYEEM R ++E  SAGETSYSSE
Sbjct: 113 RRDAVKFLLENGAFMPPDISDSRFNPPLHYCPGLEWAYEEMKRLRQEDLSAGETSYSSE 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582209|ref|XP_002531897.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223528464|gb|EEF30496.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/119 (85%), Positives = 109/119 (91%)

Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           MDVNV AWGPKSKG TPLHLAA+GGHLEVMD LLERGADIDART GACGWTPLH+AAK R
Sbjct: 58  MDVNVPAWGPKSKGATPLHLAAEGGHLEVMDELLERGADIDARTWGACGWTPLHSAAKGR 117

Query: 61  KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSE 119
           KK AV+FLIENGAFLPDDIND RFNPPLHYCP LEWAYEEM R QRE++SAGE+SYSS+
Sbjct: 118 KKAAVKFLIENGAFLPDDINDIRFNPPLHYCPGLEWAYEEMKRQQRENWSAGESSYSSD 176

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138388|ref|XP_002326590.1| predicted protein [Populus trichocarpa] gi|222833912|gb|EEE72389.1| predicted protein [Populus trichocarpa]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 101/119 (84%), Positives = 107/119 (89%)

Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           MDVNV AWGPKSKG+T LHLAAQGGHLE+MD LL RGA+IDART GACGWTPLH AAKER
Sbjct: 57  MDVNVPAWGPKSKGLTALHLAAQGGHLEIMDELLARGANIDARTLGACGWTPLHRAAKER 116

Query: 61  KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSE 119
           KKEAV+FLIENGAFLPDD+NDSRFNPPLHYC  LEWAYEEM R QRE+ SAGE SYSSE
Sbjct: 117 KKEAVKFLIENGAFLPDDMNDSRFNPPLHYCTGLEWAYEEMKRHQRENLSAGEASYSSE 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248382|ref|NP_001240128.1| uncharacterized protein LOC100814428 [Glycine max] gi|255644607|gb|ACU22806.1| unknown [Glycine max]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 98/119 (82%), Positives = 109/119 (91%)

Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           MDVNV+AWGPKSKGVTPLHLAA+GGH+ VMDVLLE GADIDARTKGACGWTPLH AAKER
Sbjct: 53  MDVNVSAWGPKSKGVTPLHLAAEGGHIGVMDVLLECGADIDARTKGACGWTPLHIAAKER 112

Query: 61  KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSE 119
           +++AV+FLIENGAF+P DI+DSRFNPPLHYCP LEWAYEEM R ++E  SAGET YSSE
Sbjct: 113 RRDAVKFLIENGAFMPPDISDSRFNPPLHYCPGLEWAYEEMKRLRQEDLSAGETCYSSE 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427572|ref|XP_002268442.1| PREDICTED: ankyrin-2 [Vitis vinifera] gi|296085508|emb|CBI29240.3| unnamed protein product [Vitis vinifera]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/121 (83%), Positives = 107/121 (88%), Gaps = 2/121 (1%)

Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           MDVNVAA GPKSKGVTPLHLAAQGGHL VMD LLERGA+IDARTKGACGWTPLH AAKER
Sbjct: 53  MDVNVAACGPKSKGVTPLHLAAQGGHLRVMDELLERGANIDARTKGACGWTPLHNAAKER 112

Query: 61  KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE--SFSAGETSYSS 118
            K+A++FLIENGAFL  DIND+RFNPPLHYC  LEWAYEEM R Q+E  S SAGETSYSS
Sbjct: 113 NKDAIKFLIENGAFLAADINDNRFNPPLHYCTGLEWAYEEMKRIQQENWSSSAGETSYSS 172

Query: 119 E 119
           E
Sbjct: 173 E 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484571|ref|XP_003612573.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355513908|gb|AES95531.1| Ankyrin repeat domain-containing protein [Medicago truncatula]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/120 (80%), Positives = 105/120 (87%)

Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           MDVNV AWGPKSKGVTPLHLAA+GGHL VMD LLERGA+IDARTKGACGWTPLH AAKER
Sbjct: 84  MDVNVTAWGPKSKGVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGWTPLHIAAKER 143

Query: 61  KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEK 120
            ++AV+FL+ENGAFLP DINDSRFNPPLHYCP LEWAYEEM R ++E  S  +TS SSE 
Sbjct: 144 NRDAVKFLVENGAFLPPDINDSRFNPPLHYCPGLEWAYEEMKRLRQEELSPEDTSCSSEN 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462509|ref|XP_004148983.1| PREDICTED: ankyrin-3-like [Cucumis sativus] gi|449532583|ref|XP_004173260.1| PREDICTED: ankyrin-3-like [Cucumis sativus]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 90/108 (83%), Positives = 99/108 (91%)

Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           MDVN  AWGPKSKG+TPLHLAA+GGHLEVMD LLERGA+IDARTKGACGWTPLH+AAKER
Sbjct: 54  MDVNSIAWGPKSKGLTPLHLAAEGGHLEVMDELLERGANIDARTKGACGWTPLHSAAKER 113

Query: 61  KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES 108
           +KEAV+FL+ENGAFLPDDIND RFNPPLHYCP LEWAYEEM R   ++
Sbjct: 114 RKEAVKFLVENGAFLPDDINDCRFNPPLHYCPGLEWAYEEMKRLHHDN 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125537689|gb|EAY84084.1| hypothetical protein OsI_05465 [Oryza sativa Indica Group] gi|149391559|gb|ABR25797.1| ankyrin-1, putative, unknown [Oryza sativa Indica Group]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 95/119 (79%), Positives = 100/119 (84%), Gaps = 1/119 (0%)

Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           MDVN  AWGPKS G TPLHLAAQGGH+++MD LLERGA+IDARTKGACGWTPLH AAKER
Sbjct: 48  MDVNAPAWGPKSPGATPLHLAAQGGHVKIMDELLERGANIDARTKGACGWTPLHIAAKER 107

Query: 61  KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSE 119
            K AVRFLIENGAFLP D+ND RFNPPLHYC  LEWAY EM R Q ES S GETS SSE
Sbjct: 108 NKRAVRFLIENGAFLPPDMNDHRFNPPLHYCSGLEWAY-EMKRMQDESDSTGETSLSSE 165

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115443637|ref|NP_001045598.1| Os02g0102600 [Oryza sativa Japonica Group] gi|41052904|dbj|BAD07816.1| unknown protein [Oryza sativa Japonica Group] gi|41053238|dbj|BAD08199.1| unknown protein [Oryza sativa Japonica Group] gi|113535129|dbj|BAF07512.1| Os02g0102600 [Oryza sativa Japonica Group] gi|125580468|gb|EAZ21399.1| hypothetical protein OsJ_05001 [Oryza sativa Japonica Group] gi|215736961|dbj|BAG95890.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765782|dbj|BAG87479.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/119 (78%), Positives = 99/119 (83%), Gaps = 1/119 (0%)

Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           MDVN  AWGPKS G TPLHLAAQGGH+++MD LLERGA+IDARTKGACGWTPLH AAKER
Sbjct: 48  MDVNAPAWGPKSPGATPLHLAAQGGHVKIMDELLERGANIDARTKGACGWTPLHIAAKER 107

Query: 61  KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSE 119
            K AVRFLIENGAFLP D+ND RFNPPLHYC  LEWAY EM R Q ES S GETS  SE
Sbjct: 108 NKRAVRFLIENGAFLPPDMNDHRFNPPLHYCSGLEWAY-EMKRMQDESDSTGETSLGSE 165

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:2159456	174	ANK6 "ankyrin repeat protein 6	0.782	0.683	0.727	6.2e-46
TAIR|locus:2142783	175	PIA1 "AT5G07840" [Arabidopsis	0.769	0.668	0.720	6.4e-44
ZFIN|ZDB-GENE-060621-2	3888	ank3b "ankyrin 3b" [Danio reri	0.486	0.019	0.448	2.3e-10
UNIPROTKB|F1P1R3	189	PSMD10 "Uncharacterized protei	0.473	0.380	0.434	2.5e-10
ZFIN|ZDB-GENE-050112-1	226	psmd10 "proteasome (prosome, m	0.486	0.327	0.423	5.2e-10
ZFIN|ZDB-GENE-081104-399	835	tnni3k "TNNI3 interacting kina	0.559	0.101	0.359	5.7e-10
UNIPROTKB|F1MQL2	1664	F1MQL2 "Uncharacterized protei	0.381	0.034	0.45	6.9e-10
FB|FBgn0011747	1549	Ank "Ankyrin" [Drosophila mela	0.473	0.046	0.460	1.4e-09
UNIPROTKB|K7GSS3	2594	ANK3 "Uncharacterized protein"	0.388	0.022	0.459	2.2e-09
UNIPROTKB|F1NA51	2890	ANK3 "Uncharacterized protein"	0.486	0.025	0.461	2.2e-09

TAIR|locus:2159456 ANK6 "ankyrin repeat protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 88/121 (72%), Positives = 104/121 (85%)

Query:     1 MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
             MDVN  AWGPKSKGV+ LHLAA+GGH+EVMD+LLERGA+IDA+T G+CGWTPLH AAKER
Sbjct:    53 MDVNALAWGPKSKGVSALHLAAEGGHIEVMDLLLERGANIDAKTWGSCGWTPLHAAAKER 112

Query:    61 KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA--GETSYSS 118
             K+EAV+FL+ENGAFL DDI D+RFNPP+HYC  LEWAYEEM +   ES S+  G+TS SS
Sbjct:   113 KREAVKFLVENGAFLADDITDTRFNPPVHYCHGLEWAYEEMKKLNSESSSSSGGDTSSSS 172

Query:   119 E 119
             +
Sbjct:   173 D 173

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0080173 "male-female gamete recognition during double fertilization" evidence=IMP

TAIR|locus:2142783 PIA1 "AT5G07840" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 85/118 (72%), Positives = 99/118 (83%)

Query:     2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
             DVN  A GPKSKG+TPLHLAA+GGH+EVMD+LLERGA+++ART GACGWTPLH AAKERK
Sbjct:    56 DVNALACGPKSKGMTPLHLAAKGGHIEVMDLLLERGANMEARTSGACGWTPLHAAAKERK 115

Query:    62 KEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE-SFSAGETSYSS 118
             +EAV+FL+ NGAFLPDDI DSRFNPP+ YC  LEWAYEE  +   + S S G+TS SS
Sbjct:   116 REAVKFLVGNGAFLPDDITDSRFNPPVQYCHGLEWAYEERKKLSEDTSLSCGDTSCSS 173

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060621-2 ank3b "ankyrin 3b" [Danio rerio (taxid:7955)]

 Score = 146 (56.5 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
 Identities = 35/78 (44%), Positives = 44/78 (56%)

Query:    12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
             + G TPLHLAA+ GH +V  +LL+ GA +   TK   G+TPLH AAK  K E    L++ 
Sbjct:   493 TSGYTPLHLAARDGHKDVASILLDNGASLGITTKK--GFTPLHVAAKYGKMEVANLLLQK 550

Query:    72 GAFLPDDINDSRFNPPLH 89
              A  PD    S   P LH
Sbjct:   551 RA-PPDAAGKSGLTP-LH 566

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1P1R3 PSMD10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 33/76 (43%), Positives = 45/76 (59%)

Query:    14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
             G TPLH+AA  G  E++  L+++GA I+A  +  C  TPLH AA + K+E    L+ENGA
Sbjct:    36 GWTPLHIAASAGRDEIVKALIDKGAPINAVNQNGC--TPLHYAASKNKQEIAIMLLENGA 93

Query:    74 FLPDDINDSRFNPPLH 89
                 D  D   + PLH
Sbjct:    94 --DPDATDHFESTPLH 107

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

ZFIN|ZDB-GENE-050112-1 psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Danio rerio (taxid:7955)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 33/78 (42%), Positives = 44/78 (56%)

Query:    16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
             T LH A   GH+ +   LL+ G ++D +   AC WTPLH AA   ++E VR LI  GA L
Sbjct:    42 TALHWACSAGHVNIAQFLLDLGVEVDLKDD-AC-WTPLHIAASAGREEIVRSLISKGAQL 99

Query:    76 PDDINDSRFNPPLHYCPS 93
              + +N +   P LHY  S
Sbjct:   100 -NSVNQNGCTP-LHYAAS 115

GO:0000502 "proteasome complex" evidence=IEA

GO:0055088 "lipid homeostasis" evidence=IMP

ZFIN|ZDB-GENE-081104-399 tnni3k "TNNI3 interacting kinase" [Danio rerio (taxid:7955)]

 Score = 142 (55.0 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
 Identities = 32/89 (35%), Positives = 54/89 (60%)

Query:    16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
             TPLH+AA  GH +V  +L++ GAD++A   G  G  PLH AA +     V+ L+++G+  
Sbjct:   169 TPLHIAAYFGHEQVCKLLMKFGADVNA--SGEVGDRPLHLAAAKGFLGIVKLLMDDGSKT 226

Query:    76 PDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
               +  D+  + PLH+C    + ++E++RF
Sbjct:   227 DVNAQDNEDHVPLHFCA--RFGHQEVVRF 253

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|F1MQL2 F1MQL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 138 (53.6 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
 Identities = 27/60 (45%), Positives = 41/60 (68%)

Query:    14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
             G+TPLH+A++ G+  ++ +LL+RG  IDA+T+   G TPLH AA+    + V  L+E GA
Sbjct:   131 GITPLHVASKRGNTNMVKLLLDRGGQIDAKTRD--GLTPLHCAARSGHDQVVELLLERGA 188

GO:0007165 "signal transduction" evidence=IEA

FB|FBgn0011747 Ank "Ankyrin" [Drosophila melanogaster (taxid:7227)]

 Score = 154 (59.3 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 35/76 (46%), Positives = 49/76 (64%)

Query:    14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
             G+TPLH+AAQ GH+ V  +LLE GA+I  RT+   G+TPLH AA     + V+F IEN A
Sbjct:   694 GLTPLHVAAQEGHVLVSQILLEHGANISERTRN--GYTPLHMAAHYGHLDLVKFFIENDA 751

Query:    74 FLPDDINDSRFNPPLH 89
              +  +++ +    PLH
Sbjct:   752 DI--EMSSNIGYTPLH 765

GO:0045170 "spectrosome" evidence=IDA;TAS

GO:0045169 "fusome" evidence=NAS;IDA

GO:0007016 "cytoskeletal anchoring at plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|K7GSS3 ANK3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 138 (53.6 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
 Identities = 28/61 (45%), Positives = 44/61 (72%)

Query:    13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
             KG T LH+A+  G  EV+ VL+  GA+++A+++   G+TPL+ AA+E   E V+FL++NG
Sbjct:    68 KGNTALHIASLAGQAEVVKVLVTNGANVNAQSQN--GFTPLYMAAQENHLEVVKFLLDNG 125

Query:    73 A 73
             A
Sbjct:   126 A 126

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NA51 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 36/78 (46%), Positives = 44/78 (56%)

Query:    12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
             + G TPLHL+A+ GH +V  VLLE GA +   TK   G+TPLH AAK  K E    L++ 
Sbjct:   530 TSGYTPLHLSAREGHEDVASVLLEHGASLAIITKK--GFTPLHVAAKYGKIEVANLLLQK 587

Query:    72 GAFLPDDINDSRFNPPLH 89
              A  PD    S   P LH
Sbjct:   588 NAS-PDASGKSGLTP-LH 603

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0009925 "basal plasma membrane" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0016328 "lateral plasma membrane" evidence=IEA

GO:0019228 "regulation of action potential in neuron" evidence=IEA

GO:0033268 "node of Ranvier" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0043194 "axon initial segment" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0071709 "membrane assembly" evidence=IEA

GO:0072660 "maintenance of protein location in plasma membrane" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.III.470.1	hypothetical protein (174 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0022009901	hypothetical protein (328 aa)			•						0.499
	fgenesh4_pm.C_LG_I001103	hypothetical protein (254 aa)			•						0.497
	grail3.0025002102	hypothetical protein (198 aa)			•						0.490
	grail3.0014034801	hypothetical protein (432 aa)			•						0.485
	gw1.57.246.1	hypothetical protein (392 aa)			•				•		0.474
	eugene3.00131104	hypothetical protein (406 aa)			•						0.469
	fgenesh4_pg.C_scaffold_13777000001	hypothetical protein (347 aa)			•						0.459
	eugene3.00181080	hypothetical protein (150 aa)			•						0.425
	fgenesh4_pg.C_scaffold_120000012	hypothetical protein (212 aa)			•						0.420
	grail3.0053014401	hypothetical protein (105 aa)			•						0.407

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	152
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-15
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-14
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-11
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-10
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-07
smart00248	30	smart00248, ANK, ankyrin repeats	1e-06
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-06
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	4e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	4e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.001
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.002
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.002
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.002
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 84.4 bits (209), Expect = 7e-22
 Identities = 39/93 (41%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
             G TPLHLAA  GHLEV+ +LLE GAD++A+     G TPLH AAK    E V+ L+E 
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDND--GRTPLHLAAKNGHLEIVKLLLEK 62

Query: 72  GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
           GA +  +  D   N PLH          ++++ 
Sbjct: 63  GADV--NARDKDGNTPLHLA--ARNGNLDVVKL 91

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 80.1 bits (198), Expect = 3e-20
 Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 4/80 (5%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           + G TPLHLAA+ GHLE++ +LLE+GAD++AR K   G TPLH AA+    + V+ L+++
Sbjct: 38  NDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDK--DGNTPLHLAARNGNLDVVKLLLKH 95

Query: 72  GAFLPDDINDSRFNPPLHYC 91
           GA +  +  D     PLH  
Sbjct: 96  GADV--NARDKDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.8 bits (182), Expect = 3e-18
 Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 6/65 (9%)

Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
          T LHLAA+ G+LE++ +LLE GAD++A+ K   G T LH AA+    E V+ L+E+GA  
Sbjct: 30 TALHLAARNGNLEIVKLLLEHGADVNAKDK--DGNTALHLAARNGNLEIVKLLLEHGA-- 85

Query: 76 PDDIN 80
            DIN
Sbjct: 86 --DIN 88

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.4 bits (160), Expect = 6e-15
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 10/76 (13%)

Query: 18 LHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPD 77
          LHLAA+ G+LE++ +LLE+GAD++         T LH AA+    E V+ L+E+GA    
Sbjct: 1  LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGA---- 52

Query: 78 DIN--DSRFNPPLHYC 91
          D+N  D   N  LH  
Sbjct: 53 DVNAKDKDGNTALHLA 68

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.9 bits (161), Expect = 1e-14
 Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 2/57 (3%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
            G TPLHLAA+ G+L+V+ +LL+ GAD++AR K   G TPLH AAK    E V+ L+
Sbjct: 72  DGNTPLHLAARNGNLDVVKLLLKHGADVNARDK--DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 55.7 bits (135), Expect = 2e-11
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
          G T LH AA  G LE++  LLE+G DI+   +   G T LH AA+    E ++ L+
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRTDE--DGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 60.0 bits (145), Expect = 2e-11
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 8/90 (8%)

Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           +DVN+     + K  T LH A + G LE + +L E GAD++      C   P+H A K  
Sbjct: 115 IDVNIK--DAELK--TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGC--YPIHIAIKHN 168

Query: 61  KKEAVRFLIENGAFLPDDINDSRFNPPLHY 90
             + ++ L+E GA+   ++ D+    PLH 
Sbjct: 169 FFDIIKLLLEKGAYA--NVKDNNGESPLHN 196

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 11  KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
           + KG T LH A +     + ++LL  GA+++   K     +PLH A K   K  V  L+E
Sbjct: 165 RHKGNTALHYATENKDQRLTELLLSYGANVNIPDK--TNNSPLHHAVKHYNKPIVHILLE 222

Query: 71  NGAFLPDDINDSRFNPPLHY 90
           NGA    D  D   N PLH 
Sbjct: 223 NGAST--DARDKCGNTPLHI 240

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 51.8 bits (125), Expect = 3e-10
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
           G TPLHLAA+ GHLEV+ +LLE GAD++AR K
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 18/97 (18%)

Query: 11  KSKGVTPLHLAAQGGH--LEVMDVLLERGADIDART--------------KGACGWTPLH 54
            S G   LHL  +     L+++ +L+++G DI+A+               K   G+TPLH
Sbjct: 138 NSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLH 197

Query: 55  TAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC 91
            A      E V++L++ GA  P+ +N    + PLH  
Sbjct: 198 YAVYNNNPEFVKYLLDLGAN-PNLVNKYG-DTPLHIA 232

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGH---LEVMDVLLERGADIDARTKGACGWTPLHTAAK 58
           DVN         G TPLHL          +++ +LLE GAD++A  +  CG+TPLH    
Sbjct: 39  DVNFR----GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER--CGFTPLHLYLY 92

Query: 59  ERKKEAV-RFLIENGAFLPDDINDSRF--NPPLHYCPSLEWAYEEMMRF 104
                 V + LI+ GA    D+N        PLH   S      +++R 
Sbjct: 93  NATTLDVIKLLIKAGA----DVNAKDKVGRTPLHVYLSGFNINPKVIRL 137

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.1 bits (124), Expect = 9e-09
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
             G TPLH AA  G  +++++LLE GAD ++R     G T L  AAK  + E V+ L++ 
Sbjct: 145 EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY--GVTALDPAAKNGRIELVKLLLDK 202

Query: 72  GAFLPDDINDS 82
           G  L     + 
Sbjct: 203 GLHLSLLKFNL 213

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK-----EAVRFL 68
           G  PLH AA  G  +++ +LL  GAD++A+     G TPLH AA          E  + L
Sbjct: 73  GRLPLHSAASKGDDKIVKLLLASGADVNAKDAD--GDTPLHLAALNGNPPEGNIEVAKLL 130

Query: 69  IENGAFLPDDI-NDSRFNPPLHYC 91
           +E GA L  +   D   N PLH+ 
Sbjct: 131 LEAGADLDVNNLRDEDGNTPLHWA 154

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA 56
           G TPLHLAA+ G LE++  LL+ G D++ R     G T L  A
Sbjct: 15 NGNTPLHLAAKYGALELVQWLLKPGVDLNLRDS--DGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 50.4 bits (120), Expect = 5e-08
 Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 10/84 (11%)

Query: 16  TPLHLAAQGGHL-EVMDVLLERGADIDARTKGACGWTPLHTAAKE-RKKEAVRFLIENGA 73
           TPLH A+Q   L  ++  LLERGAD++A  K   G TPL+  AK     E +R LI  GA
Sbjct: 275 TPLHHASQAPSLSRLVPKLLERGADVNA--KNIKGETPLYLMAKNGYDTENIRTLIMLGA 332

Query: 74  FLPDDIN--DSRFNPPLHYCPSLE 95
               D+N  D  +  PLH   +L+
Sbjct: 333 ----DVNAADRLYITPLHQASTLD 352

Length = 682

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 17/30 (56%), Positives = 24/30 (80%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDAR 43
          G T LHLAA+ G+LE++ +LLE GADI+ +
Sbjct: 61 GNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
            G TPLH A    + E +  LL+ GA+ +   K   G TPLH A     KE  + L+ NG
Sbjct: 191 YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKY--GDTPLHIAILNNNKEIFKLLLNNG 248

Query: 73  A 73
            
Sbjct: 249 P 249

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 14  GVTPLHLAAQGGHLE--VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           G TPLH  A G   +  ++  LL  G  I+AR +   G TPLH AA      A R LI  
Sbjct: 222 GNTPLHSMATGSSCKRSLVLPLLIAGISINARNRY--GQTPLHYAAVFNNPRACRRLIAL 279

Query: 72  GAFLPDDIN 80
           GA    DIN
Sbjct: 280 GA----DIN 284

Length = 471

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 42.2 bits (100), Expect = 1e-06
 Identities = 19/30 (63%), Positives = 26/30 (86%)

Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDA 42
           G TPLHLAA+ G+LEV+ +LL++GADI+A
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDA 42
           G TPLHLAA+ G+LE++ +LLE GADI+A
Sbjct: 1  DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
            G+TPLHLA     L++M +L+ RGAD D        ++PLH A      + +  LI++ 
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDK--FSPLHLAVMMGDIKGIELLIDHK 158

Query: 73  AFLPDDINDSRFNPPLHY 90
           A L  DI D     PL  
Sbjct: 159 ACL--DIEDCCGCTPLII 174

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G +PLH AA+ G    + +L++ G  I  + K   G+TPLH A     + A+  LI N +
Sbjct: 190 GESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN--GFTPLHNAII-HNRSAIELLINNAS 246

Query: 74  FLPDDINDSRFNPPLHY 90
               DI+ S    PLH+
Sbjct: 247 INDQDIDGS---TPLHH 260

Length = 434

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 26/140 (18%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA-C-----------GWTPLHTAAKE 59
           + G+T LHLAA   + E++ +LLERGA + AR  G              G +PL+ AA  
Sbjct: 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACL 185

Query: 60  RKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSE 119
                V  L E+ A    DI  +          SL      ++  + E F A     S +
Sbjct: 186 GSPSIVALLSEDPA----DIL-TAD--------SLGNTLLHLLVMENE-FKAEYEELSCQ 231

Query: 120 KLNALSRLLVHMMPLLWLDL 139
             N    LL  +     L++
Sbjct: 232 MYNFALSLLDKLRDSKELEV 251

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 9/95 (9%)

Query: 15  VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAK---ERKKEAVRFLIEN 71
           V PL+LA +  +++V+ +LL+ GADI++ TK         +  K      KE V+ L+E 
Sbjct: 36  VLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY 95

Query: 72  GAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRF 104
           GA    ++N  D+    PL Y  S +     ++ +
Sbjct: 96  GA----NVNAPDNNGITPLLYAISKKSNSYSIVEY 126

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 44.1 bits (104), Expect = 7e-06
 Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
           G TPLH+A   GH++V+ VLLE GAD     K   G TPL  A +   +E V+ L
Sbjct: 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKD--GKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN+        G  P+H+A +    +++ +LLE+GA   A  K   G +PLH AA+   
Sbjct: 149 DVNIE----DDNGCYPIHIAIKHNFFDIIKLLLEKGAY--ANVKDNNGESPLHNAAEYGD 202

Query: 62  KEAVRFLIENGAFLPDDINDSRFNPPLH 89
              ++ LI++G  + +         PLH
Sbjct: 203 YACIKLLIDHGNHIMNKCK--NGFTPLH 228

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 13  KGVTPLHLAAQGGH-LEVMDVLLERGADIDARTKGACGWTPLHTAAK-ERKKEAVRFLIE 70
           KG TPL+L A+ G+  E +  L+  GAD++A  +     TPLH A+  +R K+ V  L+E
Sbjct: 306 KGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYI--TPLHQASTLDRNKDIVITLLE 363

Query: 71  NGAFLPDDINDSRFNPPLHY 90
            GA +  +  D     P+HY
Sbjct: 364 LGANV--NARDYCDKTPIHY 381

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 12/70 (17%)

Query: 14  GVTPLHLAAQGGHL---EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
           G TPLH++   G+    +++ +LLE G D++A++    G T LH++ K  +K  ++ L+E
Sbjct: 234 GNTPLHISV--GYCKDYDILKLLLEHGVDVNAKSY-ILGLTALHSSIKSERK--LKLLLE 288

Query: 71  NGAFLPDDIN 80
            GA    DIN
Sbjct: 289 YGA----DIN 294

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           +VN+      S    PLH A +  +  ++ +LLE GA  DAR K  CG TPLH +    K
Sbjct: 193 NVNIPDKTNNS----PLHHAVKHYNKPIVHILLENGASTDARDK--CGNTPLHISVGYCK 246

Query: 62  K-EAVRFLIENGA 73
             + ++ L+E+G 
Sbjct: 247 DYDILKLLLEHGV 259

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 4e-05
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 49 GWTPLHTAAKERKKEAVRFLIENGA 73
          G TPLH AA+    E V+ L+E GA
Sbjct: 2  GNTPLHLAARNGHLEVVKLLLEAGA 26

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 16/95 (16%)

Query: 2   DVNVAAWGPKSK-GVTPLH--LAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAK 58
           DVN      K K G TPLH  L+    + +V+ +LL +GAD++A      G TPL    K
Sbjct: 109 DVNA-----KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL--YGMTPLAVLLK 161

Query: 59  ERKK--EAVRFLIENGAFLPDDIN-DSRFNPPLHY 90
            R    E +R LI+ GA   D    D RF   LH+
Sbjct: 162 SRNANVELLRLLIDAGA---DVYAVDDRFRSLLHH 193

Length = 471

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 38.4 bits (90), Expect = 4e-05
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)

Query: 48 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
           G TPLH AA+    E V+ L+E+GA    DIN
Sbjct: 1  DGNTPLHLAARNGNLELVKLLLEHGA----DIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 18  LHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           L  AA+   L  M  LL++G ++D+      G T L  A  E   + VR LI NGA
Sbjct: 626 LCTAAKRNDLTAMKELLKQGLNVDSEDHQ--GATALQVAMAEDHVDMVRLLIMNGA 679

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 49 GWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYC 91
          G T LH AA   + E V++L+E G     DIN  D   N  LH  
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGV----DINRTDEDGNTALHIA 41

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 10  PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
           P +   +PLHLA   G ++ +++L++  A +D   +  CG TPL  A  +      + L+
Sbjct: 131 PNTDKFSPLHLAVMMGDIKGIELLIDHKACLD--IEDCCGCTPLIIAMAKGDIAICKMLL 188

Query: 70  ENGA 73
           ++GA
Sbjct: 189 DSGA 192

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 33 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
          LLE G  ID       G TPLH AAK    E V++L++ G 
Sbjct: 1  LLEHG-PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGV 40

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 28  EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA--FLPDDINDSRFN 85
           E+  +LL  GADI+ + +   G T LH A + + +     L+  GA   +PD  N+S   
Sbjct: 148 EITKLLLSYGADINMKDRHK-GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNS--- 203

Query: 86  PPLH 89
            PLH
Sbjct: 204 -PLH 206

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 17 PLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
          PLH A +  +L+V+  LL RG +++         TPLH   KE  K  ++ +I
Sbjct: 40 PLHQAVEARNLDVVKSLLTRGHNVN--QPDHRDLTPLHIICKEPNKLGMKEMI 90

Length = 477

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.1 bits (79), Expect = 0.002
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)

Query: 49 GWTPLHTAAKERKKEAVRFLIENGAFLPDDIND 81
          G TPLH AA+    E V+ L++ GA    DIN 
Sbjct: 2  GRTPLHLAAENGNLEVVKLLLDKGA----DINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPL +A   G + +  +LL+ GA+ID   K  C    L  A +  K + VR  I+ GA
Sbjct: 168 GCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGC-VAALCYAIENNKIDIVRLFIKRGA 226

Length = 413

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 12/81 (14%)

Query: 16  TPLH--LAAQGGHLEVMDVLLERGADIDARTKGACGWTPLH---TAAKERKKEAVRFLIE 70
           TP+   L     ++E++  L+E GAD++ +T+     + LH   +  K  + E ++ LI+
Sbjct: 53  TPIFSCLEKDKVNVEILKFLIENGADVNFKTRDN-NLSALHHYLSFNKNVEPEILKILID 111

Query: 71  NGAFLPDDIN--DSRFNPPLH 89
           +G+     I   D      LH
Sbjct: 112 SGS----SITEEDEDGKNLLH 128

Length = 209

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 15  VTPLHLAAQGGHLEVMDVLLERGADID-ARTKGACGWTPLHTAAKERKKEAVRFLIENG- 72
            TPL  A + G  +++++ ++ GADI+   TK      PL TA K    + ++ LI+NG 
Sbjct: 36  TTPLIDAIRSGDAKIVELFIKHGADINHINTKIP---HPLLTAIKIGAHDIIKLLIDNGV 92

Query: 73  --AFLP-DDINDSRFN 85
             + LP   I      
Sbjct: 93  DTSILPIPCIEKDMIK 108

Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.88
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.88
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.84
PHA02878	477	ankyrin repeat protein; Provisional	99.8
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.8
PHA02791	284	ankyrin-like protein; Provisional	99.79
PHA02741	169	hypothetical protein; Provisional	99.78
PHA02791	284	ankyrin-like protein; Provisional	99.78
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.78
PHA02743	166	Viral ankyrin protein; Provisional	99.78
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.77
PHA02874	434	ankyrin repeat protein; Provisional	99.77
PHA02859	209	ankyrin repeat protein; Provisional	99.77
KOG0508	615	consensus Ankyrin repeat protein [General function	99.76
PHA02875	413	ankyrin repeat protein; Provisional	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
KOG0514	452	consensus Ankyrin repeat protein [General function	99.76
PHA03095	471	ankyrin-like protein; Provisional	99.75
PHA02884	300	ankyrin repeat protein; Provisional	99.74
KOG0514	452	consensus Ankyrin repeat protein [General function	99.74
PHA02736	154	Viral ankyrin protein; Provisional	99.74
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.74
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.74
PHA02946	446	ankyin-like protein; Provisional	99.74
PHA02741	169	hypothetical protein; Provisional	99.73
PHA02798	489	ankyrin-like protein; Provisional	99.73
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.73
PHA03095	471	ankyrin-like protein; Provisional	99.73
PHA02874	434	ankyrin repeat protein; Provisional	99.72
PHA02743	166	Viral ankyrin protein; Provisional	99.72
PHA03100	480	ankyrin repeat protein; Provisional	99.71
PHA03100	480	ankyrin repeat protein; Provisional	99.71
PHA02859	209	ankyrin repeat protein; Provisional	99.71
PHA02875	413	ankyrin repeat protein; Provisional	99.71
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.7
PHA02878	477	ankyrin repeat protein; Provisional	99.7
KOG0510	929	consensus Ankyrin repeat protein [General function	99.69
PHA02884	300	ankyrin repeat protein; Provisional	99.68
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.66
PHA02730	672	ankyrin-like protein; Provisional	99.66
PHA02946	446	ankyin-like protein; Provisional	99.66
PHA02989	494	ankyrin repeat protein; Provisional	99.66
PHA02876	682	ankyrin repeat protein; Provisional	99.66
KOG0508	615	consensus Ankyrin repeat protein [General function	99.66
PHA02795	437	ankyrin-like protein; Provisional	99.66
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.65
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.64
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.63
PHA02917	661	ankyrin-like protein; Provisional	99.63
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.63
PHA02798	489	ankyrin-like protein; Provisional	99.62
PHA02736	154	Viral ankyrin protein; Provisional	99.62
PHA02989	494	ankyrin repeat protein; Provisional	99.62
PHA02876	682	ankyrin repeat protein; Provisional	99.62
PHA02917	661	ankyrin-like protein; Provisional	99.61
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.61
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.6
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.55
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.54
KOG0510	929	consensus Ankyrin repeat protein [General function	99.54
PHA02730	672	ankyrin-like protein; Provisional	99.52
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.52
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.52
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.51
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.51
PHA02795	437	ankyrin-like protein; Provisional	99.5
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.5
PHA02792	631	ankyrin-like protein; Provisional	99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.47
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.44
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.44
PHA02792	631	ankyrin-like protein; Provisional	99.42
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.42
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.41
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.36
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.36
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.36
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.28
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.28
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.28
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.27
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.25
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.18
PF13606	30	Ank_3: Ankyrin repeat	99.07
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.01
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.98
PF13606	30	Ank_3: Ankyrin repeat	98.97
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.93
KOG0511	516	consensus Ankyrin repeat protein [General function	98.9
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.9
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.84
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.8
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.7
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.7
KOG0522	560	consensus Ankyrin repeat protein [General function	98.66
KOG0522	560	consensus Ankyrin repeat protein [General function	98.64
KOG2384	223	consensus Major histocompatibility complex protein	98.63
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.62
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.62
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.54
KOG2384	223	consensus Major histocompatibility complex protein	98.37
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.23
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.21
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.07
KOG2505	591	consensus Ankyrin repeat protein [General function	97.88
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.7
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.62
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.59
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.35
KOG2505	591	consensus Ankyrin repeat protein [General function	97.15
KOG0511	516	consensus Ankyrin repeat protein [General function	96.9
KOG0521	785	consensus Putative GTPase activating proteins (GAP	96.86
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.82
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.39
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.82
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	89.26

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=7e-23  Score=134.19  Aligned_cols=99  Identities=36%  Similarity=0.525  Sum_probs=49.8

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCC
Q 031810            5 VAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER-GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSR   83 (152)
Q Consensus         5 ~~~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~   83 (152)
                      +..+++|..|+||||.|+..|+.++|+.|+.. |+++|..+..  |.||||+|+..|+.+++++|++.|+.+  +.+|+.
T Consensus        63 v~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~--G~T~LHyAagK~r~eIaqlLle~ga~i--~~kD~~  138 (226)
T KOG4412|consen   63 VKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNG--GQTCLHYAAGKGRLEIAQLLLEKGALI--RIKDKQ  138 (226)
T ss_pred             CCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCC--CcceehhhhcCChhhHHHHHHhcCCCC--cccccc
Confidence            33344455555555555555555555555544 5555555444  555555555555555555555555544  455555


Q ss_pred             CCCcccccccchhhHHHHHHHHHHhh
Q 031810           84 FNPPLHYCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        84 g~tpl~~a~~~~~~~~~~~~~l~~~~  109 (152)
                      |.||||-|+..+  .-+++++|....
T Consensus       139 ~qtplHRAAavG--klkvie~Li~~~  162 (226)
T KOG4412|consen  139 GQTPLHRAAAVG--KLKVIEYLISQG  162 (226)
T ss_pred             cCchhHHHHhcc--chhhHHHHHhcC
Confidence            555555554222  234444444444

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.8e-22  Score=130.75  Aligned_cols=131  Identities=26%  Similarity=0.347  Sum_probs=93.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHc-CCCCCCCCCCCCCCCcc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLE-RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN-GAFLPDDINDSRFNPPL   88 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~-~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-ga~~~~~~~~~~g~tpl   88 (152)
                      |.+|+||||+||..|+.+++.+|++ .+..++.+|..  ||||||.|+..|+.++|+-|+.+ |+|+  +..+..|+|||
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDda--GWtPlhia~s~g~~evVk~Ll~r~~adv--na~tn~G~T~L  110 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDA--GWTPLHIAASNGNDEVVKELLNRSGADV--NATTNGGQTCL  110 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhcCCCCCCCcccc--CCchhhhhhhcCcHHHHHHHhcCCCCCc--ceecCCCccee
Confidence            5589999999999999999999984 45566666555  89999999999999999988888 8877  88888999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcCCCccCCchhhhHHHHH--HhhhhhHHHhhhcCCcccccc
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRL--LVHMMPLLWLDLASDAVLSVD  148 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d  148 (152)
                      |||+  +.+..+++++|.+.+.... ..+....++..|.  -.....+-++...+.++-..|
T Consensus       111 HyAa--gK~r~eIaqlLle~ga~i~-~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qD  169 (226)
T KOG4412|consen  111 HYAA--GKGRLEIAQLLLEKGALIR-IKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQD  169 (226)
T ss_pred             hhhh--cCChhhHHHHHHhcCCCCc-ccccccCchhHHHHhccchhhHHHHHhcCCCCCccc
Confidence            9998  5566788888888885432 2222223333333  344555555555555444433

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.84  E-value=2.1e-20  Score=121.95  Aligned_cols=116  Identities=28%  Similarity=0.421  Sum_probs=90.9

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +.+|.+|.||||.|+..|+.++++.|+..|++++.+...  ||||||.||..++.+|+.+||.+|+|+  +.+.....||
T Consensus        91 NtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~--GWTPLhSAckWnN~~va~~LLqhgaDV--nA~t~g~ltp  166 (228)
T KOG0512|consen   91 NTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNE--GWTPLHSACKWNNFEVAGRLLQHGADV--NAQTKGLLTP  166 (228)
T ss_pred             cccccccccHHHHHHhcCchHHHHHHHHccCCccccccc--CccchhhhhcccchhHHHHHHhccCcc--cccccccchh
Confidence            345999999999999999999999999999999999888  999999999999999999999999999  8888888999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcC-CCccCCchhhhHHHHH
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSA-GETSYSSEKLNALSRL  127 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~  127 (152)
                      ||+|+...+....+..+|...... +.....++....++|.
T Consensus       167 Lhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  167 LHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARR  207 (228)
T ss_pred             hHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHH
Confidence            999996555443333333333332 3334444444444333

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.80  E-value=6.4e-19  Score=135.21  Aligned_cols=98  Identities=30%  Similarity=0.386  Sum_probs=85.5

Q ss_pred             CCCC-CCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810           10 PKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus        10 ~d~~-g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      +|.. |.||||+|+..|+.+++++|++.|++++..+..  |+||||.|+..++.+++++|++.|+++  +.+|..|.|||
T Consensus       163 ~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~--g~tpLh~A~~~~~~~iv~~Ll~~ga~i--n~~d~~g~TpL  238 (477)
T PHA02878        163 KDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKT--NNSPLHHAVKHYNKPIVHILLENGAST--DARDKCGNTPL  238 (477)
T ss_pred             cCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCC--CCCHHHHHHHhCCHHHHHHHHHcCCCC--CCCCCCCCCHH
Confidence            4677 999999999999999999999999999988887  999999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcCC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |+|+.. ....+++++|.+.+...
T Consensus       239 h~A~~~-~~~~~iv~~Ll~~gadv  261 (477)
T PHA02878        239 HISVGY-CKDYDILKLLLEHGVDV  261 (477)
T ss_pred             HHHHHh-cCCHHHHHHHHHcCCCC
Confidence            999842 23468888888877653

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.80  E-value=3.8e-19  Score=134.98  Aligned_cols=99  Identities=30%  Similarity=0.413  Sum_probs=84.4

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +.+|++|.|+||+|+.+++.+++++|+++|+++|..+... +.||||||+.+|+..++.+|+++|||+  +.+|.+|.+|
T Consensus        72 ~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l-~stPLHWAar~G~~~vv~lLlqhGAdp--t~~D~~G~~~  148 (600)
T KOG0509|consen   72 NNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVL-GSTPLHWAARNGHISVVDLLLQHGADP--TLKDKQGLTP  148 (600)
T ss_pred             CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCC-CCCcchHHHHcCcHHHHHHHHHcCCCC--ceecCCCCcH
Confidence            3458899999999999999999999999999999887432 789999999999999999999999988  9999999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      +|.|+++++  ...+-+++....+
T Consensus       149 lHla~~~~~--~~~vayll~~~~d  170 (600)
T KOG0509|consen  149 LHLAAQFGH--TALVAYLLSKGAD  170 (600)
T ss_pred             HHHHHHhCc--hHHHHHHHHhccc
Confidence            999996655  4555555555533

>PHA02791 ankyrin-like protein; Provisional

Probab=99.79  E-value=1.3e-18  Score=124.91  Aligned_cols=93  Identities=17%  Similarity=0.244  Sum_probs=52.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCc-hHHHHHHhhCcHHHHHHHHHcCCCCCCCCCC-CCCCCcc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW-TPLHTAAKERKKEAVRFLIENGAFLPDDIND-SRFNPPL   88 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~-~~g~tpl   88 (152)
                      |..|.||||+|+..|+.+++++|++.|++++..+..  |+ ||||+|+..|+.+++++|++.+++.    .+ ..|.|||
T Consensus        91 d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~--g~~TpL~~Aa~~g~~eivk~LL~~~~~~----~d~~~g~TpL  164 (284)
T PHA02791         91 DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKT--GWKTSFYHAVMLNDVSIVSYFLSEIPST----FDLAILLSCI  164 (284)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCC--CCcHHHHHHHHcCCHHHHHHHHhcCCcc----cccccCccHH
Confidence            555666666666666666666666666666555444  43 5666666666666666666654422    11 2355666


Q ss_pred             cccccchhhHHHHHHHHHHhhcC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |+|+  ..++.+++++|++.+..
T Consensus       165 h~Aa--~~g~~eiv~lLL~~gAd  185 (284)
T PHA02791        165 HITI--KNGHVDMMILLLDYMTS  185 (284)
T ss_pred             HHHH--HcCCHHHHHHHHHCCCC
Confidence            6666  33335666666665543

>PHA02741 hypothetical protein; Provisional

Probab=99.78  E-value=1.1e-18  Score=116.96  Aligned_cols=98  Identities=29%  Similarity=0.372  Sum_probs=85.3

Q ss_pred             CCCCCCCCcHHHHHHHcCC----HHHHHHHHhcCCCcccccc-CCCCchHHHHHHhhCcHHHHHHHHH-cCCCCCCCCCC
Q 031810            8 WGPKSKGVTPLHLAAQGGH----LEVMDVLLERGADIDARTK-GACGWTPLHTAAKERKKEAVRFLIE-NGAFLPDDIND   81 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~----~~~~~~Ll~~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~-~ga~~~~~~~~   81 (152)
                      +.+|..|.||||+|+..|+    .+++++|++.|++++.++. .  |+||||+|+..++.+++++|+. .|+++  +..+
T Consensus        54 n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~--g~TpLh~A~~~~~~~iv~~Ll~~~g~~~--~~~n  129 (169)
T PHA02741         54 NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLE--GDTALHLAAHRRDHDLAEWLCCQPGIDL--HFCN  129 (169)
T ss_pred             hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCC--CCCHHHHHHHcCCHHHHHHHHhCCCCCC--CcCC
Confidence            4458899999999999998    5889999999999998874 6  9999999999999999999998 58877  8899


Q ss_pred             CCCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           82 SRFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        82 ~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      ..|.||||+|+..  +..+++++|.+....
T Consensus       130 ~~g~tpL~~A~~~--~~~~iv~~L~~~~~~  157 (169)
T PHA02741        130 ADNKSPFELAIDN--EDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCHHHHHHHC--CCHHHHHHHHHHHHH
Confidence            9999999999843  447899988887654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.78  E-value=2.7e-18  Score=123.35  Aligned_cols=94  Identities=20%  Similarity=0.175  Sum_probs=63.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|.+|.||||+|+..|+.+++++|++.|++++..  +  |+||||+|+..|+.+++++|+..|+++  +.+|..|+||||
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d--~~TpLh~Aa~~g~~eiV~lLL~~Gadv--n~~d~~G~TpLh   99 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL--E--NEFPLHQAATLEDTKIVKILLFSGMDD--SQFDDKGNTALY   99 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--C--CCCHHHHHHHCCCHHHHHHHHHCCCCC--CCCCCCCCCHHH
Confidence            4667777777777777777777777777766653  2  567777777777777777777777766  666777777777


Q ss_pred             ccccchhhHHHHHHHHHHhhcC
Q 031810           90 YCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      +|+.  .++.+++++|.+.+..
T Consensus       100 ~Aa~--~g~~eivk~Ll~~gad  119 (284)
T PHA02791        100 YAVD--SGNMQTVKLFVKKNWR  119 (284)
T ss_pred             HHHH--cCCHHHHHHHHHCCCC
Confidence            7763  3335667666665543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.78  E-value=2.1e-18  Score=116.60  Aligned_cols=104  Identities=27%  Similarity=0.237  Sum_probs=94.5

Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCC
Q 031810            3 VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDS   82 (152)
Q Consensus         3 ~n~~~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~   82 (152)
                      +|...|.+|+.|.|||++|+..|++.+|++|+..|+++......  .+++|.+|+..|.+++|++|+.++.++  +.-|.
T Consensus       149 ~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~--resALsLAt~ggytdiV~lLL~r~vdV--NvyDw  224 (296)
T KOG0502|consen  149 VNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKY--RESALSLATRGGYTDIVELLLTREVDV--NVYDW  224 (296)
T ss_pred             hhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhh--hhhhHhHHhcCChHHHHHHHHhcCCCc--ceecc
Confidence            45667778999999999999999999999999999999988877  789999999999999999999999988  89999


Q ss_pred             CCCCcccccccchhhHHHHHHHHHHhhcCC
Q 031810           83 RFNPPLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        83 ~g~tpl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      +|-|||-||+  ..++.++++.|+..+...
T Consensus       225 NGgTpLlyAv--rgnhvkcve~Ll~sGAd~  252 (296)
T KOG0502|consen  225 NGGTPLLYAV--RGNHVKCVESLLNSGADV  252 (296)
T ss_pred             CCCceeeeee--cCChHHHHHHHHhcCCCc
Confidence            9999999998  555688999888887664

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=9.6e-19  Score=116.89  Aligned_cols=96  Identities=25%  Similarity=0.279  Sum_probs=65.5

Q ss_pred             CCCCCCcHHHHHHHcCCHH---HHHHHHhcCCCccccc-cCCCCchHHHHHHhhCcHHHHHHHHH-cCCCCCCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGGHLE---VMDVLLERGADIDART-KGACGWTPLHTAAKERKKEAVRFLIE-NGAFLPDDINDSRF   84 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~---~~~~Ll~~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~-~ga~~~~~~~~~~g   84 (152)
                      +|..|+||||+|+..|..+   ++++|++.|++++..+ ..  |.||||+|+..++.+++++|+. .|+++  +.++..|
T Consensus        53 ~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~--g~TpLh~A~~~g~~~iv~~Ll~~~gad~--~~~d~~g  128 (166)
T PHA02743         53 YDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGT--GNTLLHIAASTKNYELAEWLCRQLGVNL--GAINYQH  128 (166)
T ss_pred             cCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCC--CCcHHHHHHHhCCHHHHHHHHhccCCCc--cCcCCCC
Confidence            4667777777777776643   3677777777777765 34  7777777777777777777774 67766  6677777


Q ss_pred             CCcccccccchhhHHHHHHHHHHhhcC
Q 031810           85 NPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        85 ~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      .||||+|+.  .+..+++++|...+..
T Consensus       129 ~tpL~~A~~--~~~~~iv~~Ll~~ga~  153 (166)
T PHA02743        129 ETAYHIAYK--MRDRRMMEILRANGAV  153 (166)
T ss_pred             CCHHHHHHH--cCCHHHHHHHHHcCCC
Confidence            777777763  3335677777666544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.77  E-value=1.7e-18  Score=131.43  Aligned_cols=115  Identities=32%  Similarity=0.433  Sum_probs=93.2

Q ss_pred             CCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCC
Q 031810            1 MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN   80 (152)
Q Consensus         1 ~d~n~~~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~   80 (152)
                      +|||..+   ..-+.||||+|+++|+..+|.+|+++|++++.+|.+  |.+|+|.|++.+++-++.+|+.+|+++  +.+
T Consensus       102 advn~~g---G~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~--G~~~lHla~~~~~~~~vayll~~~~d~--d~~  174 (600)
T KOG0509|consen  102 ADVNAIG---GVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQ--GLTPLHLAAQFGHTALVAYLLSKGADI--DLR  174 (600)
T ss_pred             CCccccC---CCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCC--CCcHHHHHHHhCchHHHHHHHHhcccC--CCc
Confidence            4677764   256799999999999999999999999999999998  999999999999999999999999987  899


Q ss_pred             CCCCCCcccccccchhhHHHHHHHHHHhhcCCCccCCchhhhHH
Q 031810           81 DSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNAL  124 (152)
Q Consensus        81 ~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  124 (152)
                      |.+|+||||+|+  ..+....+..|++.........+.++.++.
T Consensus       175 D~~grTpLmwAa--ykg~~~~v~~LL~f~a~~~~~d~~~g~TpL  216 (600)
T KOG0509|consen  175 DNNGRTPLMWAA--YKGFALFVRRLLKFGASLLLTDDNHGNTPL  216 (600)
T ss_pred             CCCCCCHHHHHH--HhcccHHHHHHHHhcccccccccccCCchH
Confidence            999999999998  333333366666666554444444444443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.77  E-value=7.3e-18  Score=127.99  Aligned_cols=98  Identities=26%  Similarity=0.397  Sum_probs=86.1

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +.+|..|.||||+|+..|+.+++++|++.|++++..+..  |.||||+|+..++.+++++|++.|+++  +..+..|.||
T Consensus       118 n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~--g~tpLh~A~~~~~~~iv~~Ll~~g~~~--n~~~~~g~tp  193 (434)
T PHA02874        118 NIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDN--GCYPIHIAIKHNFFDIIKLLLEKGAYA--NVKDNNGESP  193 (434)
T ss_pred             CCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCC--CCCHHHHHHHCCcHHHHHHHHHCCCCC--CCCCCCCCCH
Confidence            335888999999999999999999999999999988877  999999999999999999999999987  7888999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      ||+|+..  +..+++++|.+.+..
T Consensus       194 L~~A~~~--g~~~iv~~Ll~~g~~  215 (434)
T PHA02874        194 LHNAAEY--GDYACIKLLIDHGNH  215 (434)
T ss_pred             HHHHHHc--CCHHHHHHHHhCCCC
Confidence            9999844  447889888887754

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.77  E-value=9.4e-18  Score=115.99  Aligned_cols=99  Identities=19%  Similarity=0.218  Sum_probs=82.8

Q ss_pred             CCCCCCcHHHHHHHc--CCHHHHHHHHhcCCCcccccc-CCCCchHHHHHHhh---CcHHHHHHHHHcCCCCCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQG--GHLEVMDVLLERGADIDARTK-GACGWTPLHTAAKE---RKKEAVRFLIENGAFLPDDINDSR   83 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~--g~~~~~~~Ll~~~~~~~~~~~-~~~g~t~l~~a~~~---~~~~~~~~Ll~~ga~~~~~~~~~~   83 (152)
                      +|..|.||||+|+..  ++.+++++|++.|++++..+. .  |+||||+|+..   ++.+++++|+++|+++  +.+|..
T Consensus        47 ~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~--g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi--n~~d~~  122 (209)
T PHA02859         47 CNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDN--NLSALHHYLSFNKNVEPEILKILIDSGSSI--TEEDED  122 (209)
T ss_pred             cCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCC--CCCHHHHHHHhCccccHHHHHHHHHCCCCC--CCcCCC
Confidence            588899999999975  488999999999999998763 5  89999998764   4689999999999988  889999


Q ss_pred             CCCcccccccchhhHHHHHHHHHHhhcCC
Q 031810           84 FNPPLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        84 g~tpl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |.||||+|+....+..+++++|.+.+...
T Consensus       123 G~TpLh~a~~~~~~~~~iv~~Li~~gadi  151 (209)
T PHA02859        123 GKNLLHMYMCNFNVRINVIKLLIDSGVSF  151 (209)
T ss_pred             CCCHHHHHHHhccCCHHHHHHHHHcCCCc
Confidence            99999998744445578898888877553

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.76  E-value=1e-18  Score=129.03  Aligned_cols=117  Identities=24%  Similarity=0.299  Sum_probs=95.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      ...+.|||..||.-|+.+++++|+++|+|+++.++.  |.|+||+||+.|+.+++++|++.|+|+  +.++..|+|+||.
T Consensus       114 T~TNStPLraACfDG~leivKyLvE~gad~~Ianrh--GhTcLmIa~ykGh~~I~qyLle~gADv--n~ks~kGNTALH~  189 (615)
T KOG0508|consen  114 TRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRH--GHTCLMIACYKGHVDIAQYLLEQGADV--NAKSYKGNTALHD  189 (615)
T ss_pred             cccCCccHHHHHhcchhHHHHHHHHcCCCCcccccC--CCeeEEeeeccCchHHHHHHHHhCCCc--chhcccCchHHHh
Confidence            555779999999999999999999999999999988  999999999999999999999999988  8899999999999


Q ss_pred             cccchhhHHHHHHHHHHhhcCCCccCCchhhhHHHHHHhhhhh
Q 031810           91 CPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMP  133 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (152)
                      |+  +.++.+++++|...+..-.....+-.+...+....+...
T Consensus       190 ca--EsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~i  230 (615)
T KOG0508|consen  190 CA--ESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDI  230 (615)
T ss_pred             hh--hcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHH
Confidence            98  445589999999988775555544444333333443333

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.76  E-value=6.4e-18  Score=127.47  Aligned_cols=98  Identities=30%  Similarity=0.388  Sum_probs=86.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      +..|.||||+|+..|+.+++++|++.|++++..+..  |.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+
T Consensus        99 ~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~--g~tpLh~A~~~~~~~~v~~Ll~~g~~~--~~~d~~g~TpL~~  174 (413)
T PHA02875         99 YKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTD--KFSPLHLAVMMGDIKGIELLIDHKACL--DIEDCCGCTPLII  174 (413)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHhcCCCC--CCCCCCCCCHHHH
Confidence            567999999999999999999999999999998887  999999999999999999999999987  8889999999999


Q ss_pred             cccchhhHHHHHHHHHHhhcCCCc
Q 031810           91 CPSLEWAYEEMMRFQRESFSAGET  114 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~~~~~~  114 (152)
                      |+.  .++.+++++|.+.+.....
T Consensus       175 A~~--~g~~eiv~~Ll~~ga~~n~  196 (413)
T PHA02875        175 AMA--KGDIAICKMLLDSGANIDY  196 (413)
T ss_pred             HHH--cCCHHHHHHHHhCCCCCCc
Confidence            984  4457889999888766443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=5e-18  Score=119.08  Aligned_cols=95  Identities=33%  Similarity=0.556  Sum_probs=86.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      |..|.+|||+|++.|+..+++.|+..|+.+|..+..  ..||||+|+..|+.++|+.|+.+.+|+  +..+..|.|||||
T Consensus        31 ddhgfsplhwaakegh~aivemll~rgarvn~tnmg--ddtplhlaaahghrdivqkll~~kadv--navnehgntplhy  106 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMG--DDTPLHLAAAHGHRDIVQKLLSRKADV--NAVNEHGNTPLHY  106 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHhcccccccccCC--CCcchhhhhhcccHHHHHHHHHHhccc--chhhccCCCchhh
Confidence            889999999999999999999999999999988776  679999999999999999999999999  9999999999999


Q ss_pred             cccchhhHHHHHHHHHHhhcC
Q 031810           91 CPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |+  -+++..+.+-|...+..
T Consensus       107 ac--fwgydqiaedli~~ga~  125 (448)
T KOG0195|consen  107 AC--FWGYDQIAEDLISCGAA  125 (448)
T ss_pred             hh--hhcHHHHHHHHHhccce
Confidence            98  67777777777666544

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.76  E-value=1.1e-18  Score=125.33  Aligned_cols=106  Identities=25%  Similarity=0.364  Sum_probs=86.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccccCC------------------------------------CCchHH
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERG-ADIDARTKGA------------------------------------CGWTPL   53 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~-~~~~~~~~~~------------------------------------~g~t~l   53 (152)
                      |.+|+|+|||++.++++++|+.|++.| ++++.+++-.                                    .|+|+|
T Consensus       265 DsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTAL  344 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTAL  344 (452)
T ss_pred             cCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhh
Confidence            888999999999999999999999876 5555444331                                    178899


Q ss_pred             HHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHhhcCCCccCCchh
Q 031810           54 HTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEK  120 (152)
Q Consensus        54 ~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  120 (152)
                      ++|+.+|+.++++.||..|+|+  +.+|.+|.|+|++|+  +++..+++++|+....-+....+...
T Consensus       345 MLAVSHGr~d~vk~LLacgAdV--NiQDdDGSTALMCA~--EHGhkEivklLLA~p~cd~sLtD~Dg  407 (452)
T KOG0514|consen  345 MLAVSHGRVDMVKALLACGADV--NIQDDDGSTALMCAA--EHGHKEIVKLLLAVPSCDISLTDVDG  407 (452)
T ss_pred             hhhhhcCcHHHHHHHHHccCCC--ccccCCccHHHhhhh--hhChHHHHHHHhccCcccceeecCCC
Confidence            9999999999999999999999  899999999999998  88889999999887665443333333

>PHA03095 ankyrin-like protein; Provisional

Probab=99.75  E-value=1.6e-17  Score=127.11  Aligned_cols=98  Identities=29%  Similarity=0.374  Sum_probs=84.3

Q ss_pred             CCCCCCcHHHHHHHcC---CHHHHHHHHhcCCCccccccCCCCchHHHHHHhhC-cHHHHHHHHHcCCCCCCCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGG---HLEVMDVLLERGADIDARTKGACGWTPLHTAAKER-KKEAVRFLIENGAFLPDDINDSRFN   85 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g---~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~Ll~~ga~~~~~~~~~~g~   85 (152)
                      ++..|.||||+|+..+   +.++++.|++.|++++..+..  |+||||+|+..+ ..+++++|++.|+++  +.++..|.
T Consensus        43 ~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~--g~TpLh~A~~~~~~~~iv~lLl~~ga~i--n~~~~~g~  118 (471)
T PHA03095         43 RGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERC--GFTPLHLYLYNATTLDVIKLLIKAGADV--NAKDKVGR  118 (471)
T ss_pred             CCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHcCCcHHHHHHHHHcCCCC--CCCCCCCC
Confidence            4788999999999988   889999999999999988887  999999999999 589999999999987  88899999


Q ss_pred             CcccccccchhhHHHHHHHHHHhhcC
Q 031810           86 PPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        86 tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      ||||+|+.......+++++|.+.+..
T Consensus       119 tpLh~a~~~~~~~~~iv~~Ll~~gad  144 (471)
T PHA03095        119 TPLHVYLSGFNINPKVIRLLLRKGAD  144 (471)
T ss_pred             CHHHHHhhCCcCCHHHHHHHHHcCCC
Confidence            99999984444556788888887655

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.74  E-value=1.2e-17  Score=120.40  Aligned_cols=79  Identities=19%  Similarity=0.305  Sum_probs=58.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDART-KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +..|.||||+|+..++.+++++|+++|++++..+ ..  |.||||+|+..++.+++++|++.|+++  +.++..|.||||
T Consensus        67 d~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~--g~TpLh~Aa~~~~~eivklLL~~GAdi--n~kd~~G~TpL~  142 (300)
T PHA02884         67 ENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEA--KITPLYISVLHGCLKCLEILLSYGADI--NIQTNDMVTPIE  142 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHH
Confidence            4567777777777777777777777777777643 34  777777777777777777777777766  667777777777


Q ss_pred             cccc
Q 031810           90 YCPS   93 (152)
Q Consensus        90 ~a~~   93 (152)
                      +|+.
T Consensus       143 ~A~~  146 (300)
T PHA02884        143 LALM  146 (300)
T ss_pred             HHHH
Confidence            7763

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.74  E-value=5.9e-18  Score=121.54  Aligned_cols=97  Identities=28%  Similarity=0.374  Sum_probs=85.1

Q ss_pred             CCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHc-CCCCCCCCC
Q 031810            2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN-GAFLPDDIN   80 (152)
Q Consensus         2 d~n~~~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-ga~~~~~~~   80 (152)
                      |||+++   ...|+|+|++|+.+|+.++++.|+..|+|+|++|.+  |.|+|++||.+||.+++++||.. +++.  ...
T Consensus       331 nVNaKA---sQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdD--GSTALMCA~EHGhkEivklLLA~p~cd~--sLt  403 (452)
T KOG0514|consen  331 DVNAKA---SQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDD--GSTALMCAAEHGHKEIVKLLLAVPSCDI--SLT  403 (452)
T ss_pred             Ccchhh---hhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCC--ccHHHhhhhhhChHHHHHHHhccCcccc--eee
Confidence            788886   688999999999999999999999999999999998  99999999999999999999986 4555  899


Q ss_pred             CCCCCCcccccccchhhHHHHHHHHHH
Q 031810           81 DSRFNPPLHYCPSLEWAYEEMMRFQRE  107 (152)
Q Consensus        81 ~~~g~tpl~~a~~~~~~~~~~~~~l~~  107 (152)
                      |.+|.|+|.+|...++  .++..+|..
T Consensus       404 D~DgSTAl~IAleagh--~eIa~mlYa  428 (452)
T KOG0514|consen  404 DVDGSTALSIALEAGH--REIAVMLYA  428 (452)
T ss_pred             cCCCchhhhhHHhcCc--hHHHHHHHH
Confidence            9999999999986555  455544433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.74  E-value=3.1e-18  Score=113.03  Aligned_cols=95  Identities=25%  Similarity=0.353  Sum_probs=69.6

Q ss_pred             CCCCCCcHHHHHHHcCCH---HHHHHHHhcCCCccccc-cCCCCchHHHHHHhhCcHHHHHHHHHc-CCCCCCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGGHL---EVMDVLLERGADIDART-KGACGWTPLHTAAKERKKEAVRFLIEN-GAFLPDDINDSRF   84 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~---~~~~~Ll~~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~-ga~~~~~~~~~~g   84 (152)
                      +|.+|.||||+|+..|+.   +++++|++.|++++.++ ..  |+||||+|+..++.+++++|+.. |+++  +.++..|
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~--g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~--n~~~~~g  126 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVF--GNTPLHIAVYTQNYELATWLCNQPGVNM--EILNYAF  126 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCC--CCcHHHHHHHhCCHHHHHHHHhCCCCCC--ccccCCC
Confidence            366677777777776665   35677888888888776 35  78888888888888888888874 7766  7788888


Q ss_pred             CCcccccccchhhHHHHHHHHHHhhc
Q 031810           85 NPPLHYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        85 ~tpl~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      .||||+|+.  .+..+++++|...+.
T Consensus       127 ~tpL~~A~~--~~~~~i~~~Ll~~ga  150 (154)
T PHA02736        127 KTPYYVACE--RHDAKMMNILRAKGA  150 (154)
T ss_pred             CCHHHHHHH--cCCHHHHHHHHHcCC
Confidence            888888873  334677777766553

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.74  E-value=1.9e-17  Score=131.22  Aligned_cols=98  Identities=21%  Similarity=0.276  Sum_probs=74.6

Q ss_pred             CCCCCCcHHHHHHHcCC--HHHHHHHHhcCCCccccccCCCCchHHHHHH------------------------------
Q 031810           10 PKSKGVTPLHLAAQGGH--LEVMDVLLERGADIDARTKGACGWTPLHTAA------------------------------   57 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~--~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~------------------------------   57 (152)
                      +|..|.||||+|++.|+  .+++++|++.|++++.++..  |+||||+|+                              
T Consensus       208 kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~--G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L  285 (764)
T PHA02716        208 QNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVN--GMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMIL  285 (764)
T ss_pred             CCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhh
Confidence            47788888888888874  47888888888888888777  888888653                              


Q ss_pred             -------hhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           58 -------KERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        58 -------~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                             ..|+.+++++|++.|+++  +.+|..|+||||+|+....+..+++++|.+.+..
T Consensus       286 ~~~i~AA~~g~leiVklLLe~GAdI--N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD  344 (764)
T PHA02716        286 HSYITLARNIDISVVYSFLQPGVKL--HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND  344 (764)
T ss_pred             HHHHHHHHcCCHHHHHHHHhCCCce--eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC
Confidence                   346677888888888877  7788888888888764344456788888776654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.74  E-value=2.9e-17  Score=98.72  Aligned_cols=84  Identities=43%  Similarity=0.612  Sum_probs=74.4

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhh
Q 031810           18 LHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWA   97 (152)
Q Consensus        18 L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~   97 (152)
                      ||+|++.|+.++++.|++.+.+++.      |.||||+|+..|+.+++++|++.|+++  +.++..|+||||+|+  ..+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~--~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADI--NSQDKNGNTALHYAA--ENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCT--T-BSTTSSBHHHHHH--HTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccc--cccCCCCCCHHHHHH--HcC
Confidence            7999999999999999999887765      679999999999999999999999988  889999999999998  555


Q ss_pred             HHHHHHHHHHhhcC
Q 031810           98 YEEMMRFQRESFSA  111 (152)
Q Consensus        98 ~~~~~~~l~~~~~~  111 (152)
                      +.+++++|.+.+.+
T Consensus        71 ~~~~~~~Ll~~g~~   84 (89)
T PF12796_consen   71 NLEIVKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHHHHHTTT-
T ss_pred             CHHHHHHHHHcCCC
Confidence            68999999988654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02946 ankyin-like protein; Provisional

Probab=99.74  E-value=4.5e-17  Score=123.97  Aligned_cols=97  Identities=25%  Similarity=0.281  Sum_probs=77.7

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhC--cHHHHHHHHHcCCCCCCCCCCCCCC
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER--KKEAVRFLIENGAFLPDDINDSRFN   85 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~ga~~~~~~~~~~g~   85 (152)
                      +.+|..|.||||+|++.|+.+++++|+++|++++.++..  |+||||+|+..+  ..+++++|+++|++++ ...+..|.
T Consensus        66 n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~--g~TpLh~A~~~~~~~~e~v~lLl~~Gadin-~~~d~~g~  142 (446)
T PHA02946         66 NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQ--HKTPLYYLSGTDDEVIERINLLVQYGAKIN-NSVDEEGC  142 (446)
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC--CCCHHHHHHHcCCchHHHHHHHHHcCCCcc-cccCCCCC
Confidence            345889999999999999999999999999999998888  999999988765  4788999999999873 13577888


Q ss_pred             CcccccccchhhHHHHHHHHHHhhc
Q 031810           86 PPLHYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        86 tpl~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      ||||.|.  . +..+++++|.+.+.
T Consensus       143 tpL~aa~--~-~~~~vv~~Ll~~ga  164 (446)
T PHA02946        143 GPLLACT--D-PSERVFKKIMSIGF  164 (446)
T ss_pred             cHHHHHH--C-CChHHHHHHHhccc
Confidence            8887443  2 23567777766554

>PHA02741 hypothetical protein; Provisional

Probab=99.73  E-value=2.3e-17  Score=110.54  Aligned_cols=94  Identities=21%  Similarity=0.310  Sum_probs=80.4

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHh------cCCCccccccCCCCchHHHHHHhhCc----HHHHHHHHHcCCCCCCC
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLE------RGADIDARTKGACGWTPLHTAAKERK----KEAVRFLIENGAFLPDD   78 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~------~~~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~ga~~~~~   78 (152)
                      .+|..|.||||+|++.|+.++++.|+.      .|++++.++..  |+||||+|+..++    .+++++|+..|+++  +
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~--g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi--n   91 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDA--GQMCIHIAAEKHEAQLAAEIIDHLIELGADI--N   91 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCC--CCcHHHHHHHcCChHHHHHHHHHHHHcCCCC--C
Confidence            358899999999999999999998853      35788888887  9999999999998    58899999999988  7


Q ss_pred             CCCC-CCCCcccccccchhhHHHHHHHHHHh
Q 031810           79 INDS-RFNPPLHYCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        79 ~~~~-~g~tpl~~a~~~~~~~~~~~~~l~~~  108 (152)
                      .++. .|.||||+|+  ..+..+++++|+..
T Consensus        92 ~~~~~~g~TpLh~A~--~~~~~~iv~~Ll~~  120 (169)
T PHA02741         92 AQEMLEGDTALHLAA--HRRDHDLAEWLCCQ  120 (169)
T ss_pred             CCCcCCCCCHHHHHH--HcCCHHHHHHHHhC
Confidence            7774 8999999998  44457889888763

>PHA02798 ankyrin-like protein; Provisional

Probab=99.73  E-value=3.5e-17  Score=125.99  Aligned_cols=100  Identities=26%  Similarity=0.281  Sum_probs=86.2

Q ss_pred             CCCCCCCcHHHHHHHc-----CCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhC---cHHHHHHHHHcCCCCCCCCC
Q 031810            9 GPKSKGVTPLHLAAQG-----GHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER---KKEAVRFLIENGAFLPDDIN   80 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~-----g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~---~~~~~~~Ll~~ga~~~~~~~   80 (152)
                      .+|..|.||||.++..     +..+++++|++.|+++|..+..  |+||||+|+..+   +.+++++|+++|+++  +..
T Consensus        66 ~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~--G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv--n~~  141 (489)
T PHA02798         66 GLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSD--GETPLYCLLSNGYINNLEILLFMIENGADT--TLL  141 (489)
T ss_pred             CCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCC--cCcHHHHHHHcCCcChHHHHHHHHHcCCCc--ccc
Confidence            3489999999998763     5689999999999999999988  999999999875   689999999999988  889


Q ss_pred             CCCCCCcccccccchh-hHHHHHHHHHHhhcCC
Q 031810           81 DSRFNPPLHYCPSLEW-AYEEMMRFQRESFSAG  112 (152)
Q Consensus        81 ~~~g~tpl~~a~~~~~-~~~~~~~~l~~~~~~~  112 (152)
                      +..|.||||+|+..+. ...+++++|.+.+.+.
T Consensus       142 d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi  174 (489)
T PHA02798        142 DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI  174 (489)
T ss_pred             CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc
Confidence            9999999999985443 3478899998877553

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.73  E-value=3.2e-17  Score=132.82  Aligned_cols=100  Identities=26%  Similarity=0.270  Sum_probs=84.2

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhh----------------------------
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKE----------------------------   59 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~----------------------------   59 (152)
                      +..|..|.||||+|+..|+.++++.|+++|++++.+|.+  |+||||+|+..                            
T Consensus       552 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~--G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~A  629 (823)
T PLN03192        552 DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDAN--GNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTA  629 (823)
T ss_pred             CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCC--CCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHH
Confidence            345899999999999999999999999999999999888  99998866554                            


Q ss_pred             ---CcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHhhcCCC
Q 031810           60 ---RKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE  113 (152)
Q Consensus        60 ---~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~~~  113 (152)
                         |+.++++.|+++|+++  +.+|.+|.||||+|+  ..++.+++++|.+.+.+..
T Consensus       630 a~~g~~~~v~~Ll~~Gadi--n~~d~~G~TpLh~A~--~~g~~~iv~~Ll~~GAdv~  682 (823)
T PLN03192        630 AKRNDLTAMKELLKQGLNV--DSEDHQGATALQVAM--AEDHVDMVRLLIMNGADVD  682 (823)
T ss_pred             HHhCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHH--HCCcHHHHHHHHHcCCCCC
Confidence               4455667778889987  889999999999998  4556899999998876643

>PHA03095 ankyrin-like protein; Provisional

Probab=99.73  E-value=6.7e-17  Score=123.66  Aligned_cols=100  Identities=30%  Similarity=0.405  Sum_probs=88.1

Q ss_pred             CCCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCccccccCCCCchHHHHHH--hhCcHHHHHHHHHcCCCCCCCCCCCCCC
Q 031810            9 GPKSKGVTPLHLAAQGG-HLEVMDVLLERGADIDARTKGACGWTPLHTAA--KERKKEAVRFLIENGAFLPDDINDSRFN   85 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g-~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~Ll~~ga~~~~~~~~~~g~   85 (152)
                      .+|..|.||||+|+..| ..+++++|++.|++++..+..  |.||||+|+  ..++.+++++|++.|+++  +..+..|.
T Consensus        78 ~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~--g~tpLh~a~~~~~~~~~iv~~Ll~~gad~--~~~d~~g~  153 (471)
T PHA03095         78 APERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKV--GRTPLHVYLSGFNINPKVIRLLLRKGADV--NALDLYGM  153 (471)
T ss_pred             CCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCC--CCCHHHHHhhCCcCCHHHHHHHHHcCCCC--CccCCCCC
Confidence            34789999999999999 599999999999999999888  999999999  456789999999999988  88999999


Q ss_pred             CcccccccchhhHHHHHHHHHHhhcCC
Q 031810           86 PPLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        86 tpl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      ||||+|+.......+++++|.+.+...
T Consensus       154 tpL~~a~~~~~~~~~iv~~Ll~~g~~~  180 (471)
T PHA03095        154 TPLAVLLKSRNANVELLRLLIDAGADV  180 (471)
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHcCCCC
Confidence            999999866655678889888886654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.72  E-value=1.2e-16  Score=121.43  Aligned_cols=80  Identities=26%  Similarity=0.475  Sum_probs=71.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|..|.||||+|+..++.+++++|++.|++++..+..  |+||||+|+..|+.+++++|++.|+++  ..++..|.||||
T Consensus       153 ~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~--g~tpL~~A~~~g~~~iv~~Ll~~g~~i--~~~~~~g~TpL~  228 (434)
T PHA02874        153 EDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNN--GESPLHNAAEYGDYACIKLLIDHGNHI--MNKCKNGFTPLH  228 (434)
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHhCCCCC--cCCCCCCCCHHH
Confidence            4889999999999999999999999999999988877  999999999999999999999999877  666777777777


Q ss_pred             cccc
Q 031810           90 YCPS   93 (152)
Q Consensus        90 ~a~~   93 (152)
                      +|+.
T Consensus       229 ~A~~  232 (434)
T PHA02874        229 NAII  232 (434)
T ss_pred             HHHH
Confidence            7763

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.72  E-value=6.9e-17  Score=107.93  Aligned_cols=95  Identities=17%  Similarity=0.166  Sum_probs=79.4

Q ss_pred             CCCCCCCCCcHHHHHHHcCCH----HHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHH---HHHHHHHcCCCCCCCC
Q 031810            7 AWGPKSKGVTPLHLAAQGGHL----EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKE---AVRFLIENGAFLPDDI   79 (152)
Q Consensus         7 ~~~~d~~g~t~L~~a~~~g~~----~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~---~~~~Ll~~ga~~~~~~   79 (152)
                      ++..+.++.+++|+|++.|+.    +++++|++.|+.++..+..  |+||||+|+..++.+   ++++|+..|+++  +.
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~--g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi--n~   88 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHH--GRQCTHMVAWYDRANAVMKIELLVNMGADI--NA   88 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCC--CCcHHHHHHHhCccCHHHHHHHHHHcCCCC--CC
Confidence            334578899999999999997    5666788899999988887  999999999998765   489999999988  77


Q ss_pred             CC-CCCCCcccccccchhhHHHHHHHHHH
Q 031810           80 ND-SRFNPPLHYCPSLEWAYEEMMRFQRE  107 (152)
Q Consensus        80 ~~-~~g~tpl~~a~~~~~~~~~~~~~l~~  107 (152)
                      ++ ..|.||||+|+.  .++.+++++|..
T Consensus        89 ~d~~~g~TpLh~A~~--~g~~~iv~~Ll~  115 (166)
T PHA02743         89 RELGTGNTLLHIAAS--TKNYELAEWLCR  115 (166)
T ss_pred             CCCCCCCcHHHHHHH--hCCHHHHHHHHh
Confidence            87 589999999984  445788888874

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.71  E-value=1.1e-16  Score=122.74  Aligned_cols=98  Identities=20%  Similarity=0.393  Sum_probs=81.5

Q ss_pred             CCCCCCCcHHHHHH--HcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhC--cHHHHHHHHHcCCCCCCCCCCCCC
Q 031810            9 GPKSKGVTPLHLAA--QGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER--KKEAVRFLIENGAFLPDDINDSRF   84 (152)
Q Consensus         9 ~~d~~g~t~L~~a~--~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~ga~~~~~~~~~~g   84 (152)
                      .+|..|.||||+|+  ..|+.+++++|++.|++++..+..  |.||||+|+..+  +.+++++|+++|+++  +.++..|
T Consensus       101 ~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~~iv~~Ll~~g~di--n~~d~~g  176 (480)
T PHA03100        101 APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSD--GENLLHLYLESNKIDLKILKLLIDKGVDI--NAKNRYG  176 (480)
T ss_pred             CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCC--CCcHHHHHHHcCCChHHHHHHHHHCCCCc--ccccCCC
Confidence            34788899999999  888899999999999888888777  889999999888  889999999999877  7778888


Q ss_pred             CCcccccccchhhHHHHHHHHHHhhcCC
Q 031810           85 NPPLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        85 ~tpl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      .||||+|+..  ++.+++++|.+.+...
T Consensus       177 ~tpL~~A~~~--~~~~iv~~Ll~~ga~~  202 (480)
T PHA03100        177 YTPLHIAVEK--GNIDVIKFLLDNGADI  202 (480)
T ss_pred             CCHHHHHHHh--CCHHHHHHHHHcCCCc
Confidence            9999999843  3578888888776553

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.71  E-value=1.1e-16  Score=122.79  Aligned_cols=96  Identities=33%  Similarity=0.485  Sum_probs=70.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCC------chHHHHHHhhCc--HHHHHHHHHcCCCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG------WTPLHTAAKERK--KEAVRFLIENGAFLPDDIND   81 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g------~t~l~~a~~~~~--~~~~~~Ll~~ga~~~~~~~~   81 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..+..  |      .||||+|+..++  .+++++|++.|+++  +.+|
T Consensus       172 ~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~--~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di--n~~d  247 (480)
T PHA03100        172 KNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIE--TLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI--NIKD  247 (480)
T ss_pred             ccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCC--CCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC--CCCC
Confidence            3567777777777777777777777777777766555  5      677777777777  77777777777766  6777


Q ss_pred             CCCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           82 SRFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        82 ~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      ..|.||||+|+.  .++.+++++|.+.+..
T Consensus       248 ~~g~TpL~~A~~--~~~~~iv~~Ll~~gad  275 (480)
T PHA03100        248 VYGFTPLHYAVY--NNNPEFVKYLLDLGAN  275 (480)
T ss_pred             CCCCCHHHHHHH--cCCHHHHHHHHHcCCC
Confidence            888888888873  3346777777777654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.71  E-value=1.4e-16  Score=110.11  Aligned_cols=98  Identities=16%  Similarity=0.156  Sum_probs=82.3

Q ss_pred             CC-CCCCcHHHHHHHc---CCHHHHHHHHhcCCCccccccCCCCchHHHHHHh--hCcHHHHHHHHHcCCCCCCCCCCCC
Q 031810           10 PK-SKGVTPLHLAAQG---GHLEVMDVLLERGADIDARTKGACGWTPLHTAAK--ERKKEAVRFLIENGAFLPDDINDSR   83 (152)
Q Consensus        10 ~d-~~g~t~L~~a~~~---g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~ga~~~~~~~~~~   83 (152)
                      ++ ..|.||||+|+..   ++.+++++|++.|++++..+..  |.||||+|+.  .++.+++++|++.|+++  +.+|..
T Consensus        82 ~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~--G~TpLh~a~~~~~~~~~iv~~Li~~gadi--n~~d~~  157 (209)
T PHA02859         82 KTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDED--GKNLLHMYMCNFNVRINVIKLLIDSGVSF--LNKDFD  157 (209)
T ss_pred             cCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCC--CCCHHHHHHHhccCCHHHHHHHHHcCCCc--ccccCC
Confidence            35 5799999998763   4789999999999999999988  9999999876  46899999999999988  889999


Q ss_pred             CCCcccccccchhhHHHHHHHHHHhhcCC
Q 031810           84 FNPPLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        84 g~tpl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |.||||.++. ..+..+++++|.+.+...
T Consensus       158 g~t~Lh~~a~-~~~~~~iv~~Ll~~Gadi  185 (209)
T PHA02859        158 NNNILYSYIL-FHSDKKIFDFLTSLGIDI  185 (209)
T ss_pred             CCcHHHHHHH-hcCCHHHHHHHHHcCCCC
Confidence            9999996542 334578999998877543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.71  E-value=1.9e-16  Score=119.55  Aligned_cols=98  Identities=26%  Similarity=0.332  Sum_probs=65.4

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccC--------------------------------CCCchHHHHHH
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG--------------------------------ACGWTPLHTAA   57 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~--------------------------------~~g~t~l~~a~   57 (152)
                      ++..|.||||+|+..|+.+++++|++.|++++..+..                                ..|.||||+|+
T Consensus        31 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~  110 (413)
T PHA02875         31 EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLAT  110 (413)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHH
Confidence            3666777777777777777777777777766544222                                11667777777


Q ss_pred             hhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           58 KERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        58 ~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      ..++.+++++|++.|+++  +..+..|.||||+|+.  .+..+++++|.+.+..
T Consensus       111 ~~~~~~iv~~Ll~~gad~--~~~~~~g~tpLh~A~~--~~~~~~v~~Ll~~g~~  160 (413)
T PHA02875        111 ILKKLDIMKLLIARGADP--DIPNTDKFSPLHLAVM--MGDIKGIELLIDHKAC  160 (413)
T ss_pred             HhCCHHHHHHHHhCCCCC--CCCCCCCCCHHHHHHH--cCCHHHHHHHHhcCCC
Confidence            777777777777777766  6666777777777763  3335666666665543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.70  E-value=2.5e-17  Score=133.67  Aligned_cols=96  Identities=31%  Similarity=0.565  Sum_probs=87.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      ++..|.||||.|+..|+.++|++|+++|++++.++..  |+||||.||..|+.+|+.+|+++|+++  +..+.+|.|||+
T Consensus       536 ~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~--G~TPLH~Aa~~G~~~i~~LLlk~GA~v--na~d~~g~TpL~  611 (1143)
T KOG4177|consen  536 RTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKL--GYTPLHQAAQQGHNDIAELLLKHGASV--NAADLDGFTPLH  611 (1143)
T ss_pred             hcccccchHHHHHhcCCchHHHHhhhCCccccccCCC--CCChhhHHHHcChHHHHHHHHHcCCCC--CcccccCcchhH
Confidence            4788999999999999999999999999999999977  999999999999999999999999988  899999999999


Q ss_pred             ccccchhhHHHHHHHHHHhhcC
Q 031810           90 YCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      +|+.++.  .++++++......
T Consensus       612 iA~~lg~--~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  612 IAVRLGY--LSVVKLLKVVTAT  631 (1143)
T ss_pred             HHHHhcc--cchhhHHHhccCc
Confidence            9995544  6788888777766

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.70  E-value=2.3e-16  Score=121.15  Aligned_cols=96  Identities=27%  Similarity=0.337  Sum_probs=84.3

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhh-CcHHHHHHHHHcCCCCCCCCCCC-CCCC
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKE-RKKEAVRFLIENGAFLPDDINDS-RFNP   86 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~ga~~~~~~~~~-~g~t   86 (152)
                      .+|..|.||||+|+..|+.++++.|++.|++++..+..  |.||||+|+.. ++.+++++|+++|+++  +.++. .|.|
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~--g~TpLh~A~~~~~~~~iv~~Ll~~gadv--n~~~~~~g~T  271 (477)
T PHA02878        196 IPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKC--GNTPLHISVGYCKDYDILKLLLEHGVDV--NAKSYILGLT  271 (477)
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHhcCCHHHHHHHHHcCCCC--CccCCCCCCC
Confidence            35889999999999999999999999999999999887  99999999975 6899999999999988  66665 7999


Q ss_pred             cccccccchhhHHHHHHHHHHhhcCC
Q 031810           87 PLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        87 pl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |||+|+  +.  .+++++|.+.+.+.
T Consensus       272 pLh~A~--~~--~~~v~~Ll~~gadi  293 (477)
T PHA02878        272 ALHSSI--KS--ERKLKLLLEYGADI  293 (477)
T ss_pred             HHHHHc--cC--HHHHHHHHHCCCCC
Confidence            999995  33  46888888887654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.69  E-value=2.4e-16  Score=122.82  Aligned_cols=130  Identities=22%  Similarity=0.208  Sum_probs=101.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHH-cCCCCCCCCCCCCCCCcc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE-NGAFLPDDINDSRFNPPL   88 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~ga~~~~~~~~~~g~tpl   88 (152)
                      .|.+|.||||+|++.|+.+.++.|+..|++++.++.+  +.||||.|+..|+.++++-||+ .+.. ..+..|..|.|||
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d--~~spLH~AA~yg~~ntv~rLL~~~~~r-llne~D~~g~tpL  345 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKD--EESPLHFAAIYGRINTVERLLQESDTR-LLNESDLHGMTPL  345 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCC--CCCchHHHHHcccHHHHHHHHhCcCcc-ccccccccCCCch
Confidence            4889999999999999999999999999999999988  8999999999999999999999 4443 3478899999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcCCCc----cCCchhhhHHHHHHhhhhhHHHhhhcCCcc
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSAGET----SYSSEKLNALSRLLVHMMPLLWLDLASDAV  144 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (152)
                      |.|+  +.+...++++|+..+.....    +..+......+....+..-+....+.+..+
T Consensus       346 Hlaa--~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  346 HLAA--KSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             hhhh--hcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            9999  55568899999988776543    222222233333345555566666655544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.68  E-value=5.6e-16  Score=111.77  Aligned_cols=99  Identities=17%  Similarity=0.122  Sum_probs=83.3

Q ss_pred             CCCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCccccc----cCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCC-CC
Q 031810            9 GPKSKGVTP-LHLAAQGGHLEVMDVLLERGADIDART----KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN-DS   82 (152)
Q Consensus         9 ~~d~~g~t~-L~~a~~~g~~~~~~~Ll~~~~~~~~~~----~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~-~~   82 (152)
                      .+|..|.|+ ||.|++.|+.++++.|+++|++++..+    ..  |.||||+|+..++.+++++|+++|+++  +.+ +.
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~--g~TpLh~Aa~~~~~eivklLL~~GADV--N~~~~~  102 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENS--KTNPLIYAIDCDNDDAAKLLIRYGADV--NRYAEE  102 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--CcccCC
Confidence            468888876 556677799999999999999999874    34  999999999999999999999999988  765 46


Q ss_pred             CCCCcccccccchhhHHHHHHHHHHhhcCCC
Q 031810           83 RFNPPLHYCPSLEWAYEEMMRFQRESFSAGE  113 (152)
Q Consensus        83 ~g~tpl~~a~~~~~~~~~~~~~l~~~~~~~~  113 (152)
                      .|.||||+|+  ..+..+++++|...+....
T Consensus       103 ~g~TpLh~Aa--~~~~~eivklLL~~GAdin  131 (300)
T PHA02884        103 AKITPLYISV--LHGCLKCLEILLSYGADIN  131 (300)
T ss_pred             CCCCHHHHHH--HcCCHHHHHHHHHCCCCCC
Confidence            7999999998  4445789999988876643

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.66  E-value=9.8e-16  Score=121.68  Aligned_cols=78  Identities=21%  Similarity=0.255  Sum_probs=70.9

Q ss_pred             CCCCCcHHHHHHH--cCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCc--HHHHHHHHHcCCCCCCCCCCCCCCC
Q 031810           11 KSKGVTPLHLAAQ--GGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK--KEAVRFLIENGAFLPDDINDSRFNP   86 (152)
Q Consensus        11 d~~g~t~L~~a~~--~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~--~~~~~~Ll~~ga~~~~~~~~~~g~t   86 (152)
                      |..|.||||.|+.  .++.+++++|++.|++++..+..  |+||||+|+..|+  .+++++|+++|+++  +.++..|.|
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~--G~TPLH~Aa~~g~~~~eIVklLLe~GADV--N~kD~~G~T  249 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNH--LITPLHTYLITGNVCASVIKKIIELGGDM--DMKCVNGMS  249 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHcCCCCHHHHHHHHHcCCCC--CCCCCCCCC
Confidence            7889999999864  46789999999999999999888  9999999999985  58999999999988  889999999


Q ss_pred             cccccc
Q 031810           87 PLHYCP   92 (152)
Q Consensus        87 pl~~a~   92 (152)
                      |||+|+
T Consensus       250 PLh~Ai  255 (764)
T PHA02716        250 PIMTYI  255 (764)
T ss_pred             HHHHHH
Confidence            999874

>PHA02730 ankyrin-like protein; Provisional

Probab=99.66  E-value=5.5e-16  Score=121.26  Aligned_cols=98  Identities=19%  Similarity=0.269  Sum_probs=85.2

Q ss_pred             CCCCCCCcHHHHHHHcC---CHHHHHHHHhcCCCccccccCCCCchHHHHHHhhC--cHHHHHHHHHcCCCCCCCCCCCC
Q 031810            9 GPKSKGVTPLHLAAQGG---HLEVMDVLLERGADIDARTKGACGWTPLHTAAKER--KKEAVRFLIENGAFLPDDINDSR   83 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g---~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~ga~~~~~~~~~~   83 (152)
                      .+|..|.||||+|+..+   +.+++++|+++|++++.+|..  |+||||+|+..+  +.+++++|++.|++.+.+..+..
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~--G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~  113 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNE--GLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNI  113 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCC--CCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccccc
Confidence            45889999999999986   589999999999999999988  999999999866  79999999999886655666666


Q ss_pred             CCCcccccccchhhHHHHHHHHHHh
Q 031810           84 FNPPLHYCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        84 g~tpl~~a~~~~~~~~~~~~~l~~~  108 (152)
                      +.+|||.++.+.....+++++|...
T Consensus       114 ~d~~l~~y~~s~n~~~~~vk~Li~~  138 (672)
T PHA02730        114 NDFDLYSYMSSDNIDLRLLKYLIVD  138 (672)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHh
Confidence            8899998887677888999999863

>PHA02946 ankyin-like protein; Provisional

Probab=99.66  E-value=8.7e-16  Score=116.97  Aligned_cols=96  Identities=23%  Similarity=0.251  Sum_probs=82.9

Q ss_pred             CCcHHHHHHH--cCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 031810           14 GVTPLHLAAQ--GGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC   91 (152)
Q Consensus        14 g~t~L~~a~~--~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a   91 (152)
                      +.++||.++.  ..+.++++.|++.|+++|.++..  |+||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~--G~TpLh~Aa~~g~~eiv~lLL~~GAdi--n~~d~~g~TpLh~A  112 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDD--GNYPLHIASKINNNRIVAMLLTHGADP--NACDKQHKTPLYYL  112 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCC--CCCHHHHHHHcCCHHHHHHHHHCcCCC--CCCCCCCCCHHHHH
Confidence            4689998764  45678999999999999999988  999999999999999999999999988  88999999999998


Q ss_pred             ccchhhHHHHHHHHHHhhcCCC
Q 031810           92 PSLEWAYEEMMRFQRESFSAGE  113 (152)
Q Consensus        92 ~~~~~~~~~~~~~l~~~~~~~~  113 (152)
                      +.......+++++|.+.+....
T Consensus       113 ~~~~~~~~e~v~lLl~~Gadin  134 (446)
T PHA02946        113 SGTDDEVIERINLLVQYGAKIN  134 (446)
T ss_pred             HHcCCchHHHHHHHHHcCCCcc
Confidence            7544445688888888776543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.66  E-value=1.2e-15  Score=117.72  Aligned_cols=96  Identities=22%  Similarity=0.247  Sum_probs=60.9

Q ss_pred             CCCcHHHHHHHcC------CHHHHHHHHhcCCCccccccCCCCchHHHHHHhh---CcHHHHHHHHHcCCCCCCCCCCCC
Q 031810           13 KGVTPLHLAAQGG------HLEVMDVLLERGADIDARTKGACGWTPLHTAAKE---RKKEAVRFLIENGAFLPDDINDSR   83 (152)
Q Consensus        13 ~g~t~L~~a~~~g------~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~ga~~~~~~~~~~   83 (152)
                      .+.||||.|+..+      ..+++++|+++|+++|.++..  |+||||.|+..   ++.+++++|+++|++++ +.++..
T Consensus        68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~--g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin-~~~d~~  144 (494)
T PHA02989         68 YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFN--GVSPIVCFIYNSNINNCDMLRFLLSKGINVN-DVKNSR  144 (494)
T ss_pred             CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCC--CCcHHHHHHHhcccCcHHHHHHHHHCCCCcc-cccCCC
Confidence            3567777666533      346677777777777776666  77777766544   45677777777777552 345667


Q ss_pred             CCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           84 FNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        84 g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |.||||+|+....++.+++++|.+.+.+
T Consensus       145 g~tpLh~a~~~~~~~~~iv~~Ll~~Gad  172 (494)
T PHA02989        145 GYNLLHMYLESFSVKKDVIKILLSFGVN  172 (494)
T ss_pred             CCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence            7777777653333445667777666544

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.66  E-value=1.5e-15  Score=121.18  Aligned_cols=98  Identities=26%  Similarity=0.325  Sum_probs=78.1

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCc-HHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK-KEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      +|..|.||||+|+..|+.++++.|++.|++++..+..  |.||||+|+..+. ..++++|++.|+++  +.+|..|+|||
T Consensus       371 ~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~--g~T~Lh~A~~~~~~~~~vk~Ll~~gadi--n~~d~~G~TpL  446 (682)
T PHA02876        371 RDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK--IGTALHFALCGTNPYMSVKTLIDRGANV--NSKNKDLSTPL  446 (682)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCC--CCchHHHHHHcCCHHHHHHHHHhCCCCC--CcCCCCCChHH
Confidence            4788888999888888888888888888888887776  8888888877654 46788888888877  88888999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcCC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |+|+.. +...+++++|.+.+...
T Consensus       447 h~Aa~~-~~~~~iv~lLl~~Gad~  469 (682)
T PHA02876        447 HYACKK-NCKLDVIEMLLDNGADV  469 (682)
T ss_pred             HHHHHh-CCcHHHHHHHHHCCCCC
Confidence            999732 22457888888876553

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.66  E-value=1.2e-15  Score=113.14  Aligned_cols=97  Identities=29%  Similarity=0.396  Sum_probs=87.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      .-+|.+||-.|+-.|++++|+.|++.|+++|.....  ..|||..||.-|+.+++++|+++|+|+  +..|+.|.|+||+
T Consensus        81 ~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~T--NStPLraACfDG~leivKyLvE~gad~--~IanrhGhTcLmI  156 (615)
T KOG0508|consen   81 TIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRT--NSTPLRAACFDGHLEIVKYLVEHGADP--EIANRHGHTCLMI  156 (615)
T ss_pred             ccCCCchhhHHhccCcHHHHHHHHHhcCcccccccc--CCccHHHHHhcchhHHHHHHHHcCCCC--cccccCCCeeEEe
Confidence            556889998889999999999999999999987776  679999999999999999999999988  9999999999999


Q ss_pred             cccchhhHHHHHHHHHHhhcCCC
Q 031810           91 CPSLEWAYEEMMRFQRESFSAGE  113 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~~~~~  113 (152)
                      |+  ..++.+++++|++.+.+..
T Consensus       157 a~--ykGh~~I~qyLle~gADvn  177 (615)
T KOG0508|consen  157 AC--YKGHVDIAQYLLEQGADVN  177 (615)
T ss_pred             ee--ccCchHHHHHHHHhCCCcc
Confidence            98  5566899999999887643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.66  E-value=4.2e-16  Score=116.81  Aligned_cols=95  Identities=20%  Similarity=0.100  Sum_probs=83.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 031810           13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP   92 (152)
Q Consensus        13 ~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~   92 (152)
                      .|.|++|.|...+..+++++|+++|+++|.++..  |.||||+|+..|+.+++++|+++|+++  +.++..|.||||+|+
T Consensus       187 ~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~--G~TpLh~Aa~~g~~eiVelLL~~GAdI--N~~d~~G~TpLh~Aa  262 (437)
T PHA02795        187 IQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAG--GRTLLYRAIYAGYIDLVSWLLENGANV--NAVMSNGYTCLDVAV  262 (437)
T ss_pred             hccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHH
Confidence            4678888999989999999999999999999888  999999999999999999999999988  889999999999998


Q ss_pred             cchh------hHHHHHHHHHHhhcC
Q 031810           93 SLEW------AYEEMMRFQRESFSA  111 (152)
Q Consensus        93 ~~~~------~~~~~~~~l~~~~~~  111 (152)
                      ..+.      .+.+++++|++.+..
T Consensus       263 ~~g~~~~~~~~~~eIvelLL~~gad  287 (437)
T PHA02795        263 DRGSVIARRETHLKILEILLREPLS  287 (437)
T ss_pred             HcCCcccccccHHHHHHHHHhCCCC
Confidence            5442      246888888876554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=1.7e-16  Score=118.72  Aligned_cols=102  Identities=29%  Similarity=0.489  Sum_probs=89.4

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCC
Q 031810            7 AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP   86 (152)
Q Consensus         7 ~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~t   86 (152)
                      ++.+|.+|-|+||-|++.|++++|++|+++|++||..|.+  ||||||+|+.++++.+++.|++.|+-+- ...-.++.|
T Consensus       576 pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSd--GWTPLHCAASCNnv~~ckqLVe~Gaavf-AsTlSDmeT  652 (752)
T KOG0515|consen  576 PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSD--GWTPLHCAASCNNVPMCKQLVESGAAVF-ASTLSDMET  652 (752)
T ss_pred             CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCC--CCchhhhhhhcCchHHHHHHHhccceEE-eeecccccc
Confidence            3446899999999999999999999999999999999998  9999999999999999999999998652 334456789


Q ss_pred             cccccccchhhHHHHHHHHHHhhcC
Q 031810           87 PLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        87 pl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      +..-|-....++..|.+||......
T Consensus       653 a~eKCee~eeGY~~CsqyL~~vqes  677 (752)
T KOG0515|consen  653 AAEKCEEMEEGYDQCSQYLYGVQES  677 (752)
T ss_pred             hhhhcchhhhhHHHHHHHHHHHHHh
Confidence            9999988888999999999775544

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.64  E-value=8.3e-16  Score=83.95  Aligned_cols=54  Identities=54%  Similarity=0.876  Sum_probs=45.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHH
Q 031810           14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI   69 (152)
Q Consensus        14 g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   69 (152)
                      |+||||+|++.|+.+++++|++.|.+++..|.+  |+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~--g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDED--GRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TT--S--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999999999887  999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.63  E-value=2.2e-16  Score=86.82  Aligned_cols=55  Identities=49%  Similarity=0.697  Sum_probs=26.9

Q ss_pred             HHhcC-CCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 031810           33 LLERG-ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC   91 (152)
Q Consensus        33 Ll~~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a   91 (152)
                      |++.| .+++..|..  |.||||+|+..|+.+++++|+..|+++  +.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~--G~T~LH~A~~~g~~~~v~~Ll~~g~d~--~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKY--GNTPLHWAARYGHSEVVRLLLQNGADP--NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TT--S--HHHHHHHHT-HHHHHHHHHCT--T--T---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCC--CCcHHHHHHHcCcHHHHHHHHHCcCCC--CCCcCCCCCHHHhC
Confidence            45556 677777776  778888888888888888888777766  77788888888775

>PHA02917 ankyrin-like protein; Provisional

Probab=99.63  E-value=1.2e-15  Score=120.80  Aligned_cols=98  Identities=16%  Similarity=0.197  Sum_probs=79.9

Q ss_pred             CCCCCCcHHHHHH--HcCCHHHHHHHHhcCCCccccccC-CCC-----------chHHHHHHh-----------hCcHHH
Q 031810           10 PKSKGVTPLHLAA--QGGHLEVMDVLLERGADIDARTKG-ACG-----------WTPLHTAAK-----------ERKKEA   64 (152)
Q Consensus        10 ~d~~g~t~L~~a~--~~g~~~~~~~Ll~~~~~~~~~~~~-~~g-----------~t~l~~a~~-----------~~~~~~   64 (152)
                      +|..|+||||.++  ..|+.+++++|+++|++++..+.. ..|           .||||+|+.           .++.++
T Consensus       132 ~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~ei  211 (661)
T PHA02917        132 KCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEV  211 (661)
T ss_pred             cCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHH
Confidence            4889999999654  468999999999999999865432 013           599999986           458899


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHhh
Q 031810           65 VRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        65 ~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~  109 (152)
                      +++|++.|+++  +.+|.+|.||||+|+..+....+++++|.++.
T Consensus       212 v~~Li~~Gadv--n~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~  254 (661)
T PHA02917        212 VKCLINHGIKP--SSIDKNYCTALQYYIKSSHIDIDIVKLLMKGI  254 (661)
T ss_pred             HHHHHHCCCCc--ccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCC
Confidence            99999999988  89999999999999965554457999887644

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.63  E-value=2.5e-15  Score=90.27  Aligned_cols=64  Identities=47%  Similarity=0.732  Sum_probs=57.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCC
Q 031810           14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND   81 (152)
Q Consensus        14 g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~   81 (152)
                      |.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +.+|
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~n   89 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGADINSQDKN--GNTALHYAAENGNLEIVKLLLEHGADV--NIRN   89 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTT--SSBHHHHHHHTTHHHHHHHHHHTTT-T--TSS-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcccccccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcC
Confidence            889999999999999999999999999998877  999999999999999999999999987  5543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02798 ankyrin-like protein; Provisional

Probab=99.62  E-value=2.6e-15  Score=115.72  Aligned_cols=100  Identities=22%  Similarity=0.324  Sum_probs=84.0

Q ss_pred             CCCCCCCCcHHHHHHHcC---CHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCc---HHHHHHHHHcCCCCCCCCC-
Q 031810            8 WGPKSKGVTPLHLAAQGG---HLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK---KEAVRFLIENGAFLPDDIN-   80 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g---~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~Ll~~ga~~~~~~~-   80 (152)
                      +.+|..|.||||+|+..+   +.+++++|++.|++++..+..  |.||||+|+..++   .+++++|++.|+++  +.+ 
T Consensus       103 N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~--g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi--n~~~  178 (489)
T PHA02798        103 NKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKD--GFTMLQVYLQSNHHIDIEIIKLLLEKGVDI--NTHN  178 (489)
T ss_pred             CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCC--CCcHHHHHHHcCCcchHHHHHHHHHhCCCc--cccc
Confidence            334889999999999875   689999999999999999988  9999999999887   89999999999988  555 


Q ss_pred             CCCCCCcccccccc--hhhHHHHHHHHHHhhcC
Q 031810           81 DSRFNPPLHYCPSL--EWAYEEMMRFQRESFSA  111 (152)
Q Consensus        81 ~~~g~tpl~~a~~~--~~~~~~~~~~l~~~~~~  111 (152)
                      +..|.||||.++..  .....+++++|.+.+..
T Consensus       179 ~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~  211 (489)
T PHA02798        179 NKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI  211 (489)
T ss_pred             CcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC
Confidence            46789999988632  23357888888887654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.62  E-value=7.7e-16  Score=101.59  Aligned_cols=93  Identities=24%  Similarity=0.289  Sum_probs=70.6

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCC--C-----ccccccCCCCchHHHHHHhhCcH---HHHHHHHHcCCCCCC
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGA--D-----IDARTKGACGWTPLHTAAKERKK---EAVRFLIENGAFLPD   77 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~--~-----~~~~~~~~~g~t~l~~a~~~~~~---~~~~~Ll~~ga~~~~   77 (152)
                      +.+|..|.||||+|++.|+.  +.++...+.  +     ++..+..  |+||||+|+..++.   +++++|++.|+++  
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~--g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi--   84 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRH--GKQCVHIVSNPDKADPQEKLKLLMEWGADI--   84 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCC--CCEEEEeecccCchhHHHHHHHHHHcCCCc--
Confidence            44688999999999999983  333332222  1     2344656  99999999999876   4688999999988  


Q ss_pred             CCCC-CCCCCcccccccchhhHHHHHHHHHHh
Q 031810           78 DIND-SRFNPPLHYCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        78 ~~~~-~~g~tpl~~a~~~~~~~~~~~~~l~~~  108 (152)
                      +.++ ..|.||||+|+  ..++.+++++|...
T Consensus        85 n~~~~~~g~T~Lh~A~--~~~~~~i~~~Ll~~  114 (154)
T PHA02736         85 NGKERVFGNTPLHIAV--YTQNYELATWLCNQ  114 (154)
T ss_pred             cccCCCCCCcHHHHHH--HhCCHHHHHHHHhC
Confidence            7777 58999999998  44457888888763

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.62  E-value=2.5e-15  Score=115.86  Aligned_cols=98  Identities=16%  Similarity=0.256  Sum_probs=82.0

Q ss_pred             CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCc-cccccCCCCchHHHHHHhh--CcHHHHHHHHHcCCCCCCCC-CCC
Q 031810           10 PKSKGVTPLHLAAQG---GHLEVMDVLLERGADI-DARTKGACGWTPLHTAAKE--RKKEAVRFLIENGAFLPDDI-NDS   82 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~---g~~~~~~~Ll~~~~~~-~~~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~ga~~~~~~-~~~   82 (152)
                      +|..|.||||.|+..   ++.+++++|+++|+++ +..+..  |+||||+|+..  ++.+++++|+++|+++  +. .+.
T Consensus       104 ~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~--g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi--~~~~~~  179 (494)
T PHA02989        104 KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSR--GYNLLHMYLESFSVKKDVIKILLSFGVNL--FEKTSL  179 (494)
T ss_pred             CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCC--CCCHHHHHHHhccCCHHHHHHHHHcCCCc--cccccc
Confidence            488999999988764   6789999999999999 788877  99999998764  5789999999999988  55 678


Q ss_pred             CCCCcccccccch--hhHHHHHHHHHHhhcC
Q 031810           83 RFNPPLHYCPSLE--WAYEEMMRFQRESFSA  111 (152)
Q Consensus        83 ~g~tpl~~a~~~~--~~~~~~~~~l~~~~~~  111 (152)
                      .|.||||+|+...  .++.+++++|.+.+..
T Consensus       180 ~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~  210 (494)
T PHA02989        180 YGLTPMNIYLRNDIDVISIKVIKYLIKKGVN  210 (494)
T ss_pred             cCCChHHHHHhcccccccHHHHHHHHhCCCC
Confidence            8999999886332  3457889999887765

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.62  E-value=8.9e-15  Score=116.75  Aligned_cols=95  Identities=23%  Similarity=0.268  Sum_probs=50.3

Q ss_pred             CCCCCcHHHHHHHc-CCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           11 KSKGVTPLHLAAQG-GHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        11 d~~g~t~L~~a~~~-g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      |..|.||||+|+.. +..++++.|++.|++++..+..  |.||||+|+..++.+++++|++.|+++  +..+..|.||||
T Consensus       338 d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~--G~TpLh~Aa~~~~~~iv~~Ll~~gad~--~~~~~~g~T~Lh  413 (682)
T PHA02876        338 DRLYITPLHQASTLDRNKDIVITLLELGANVNARDYC--DKTPIHYAAVRNNVVIINTLLDYGADI--EALSQKIGTALH  413 (682)
T ss_pred             ccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCc--cccCCCCCchHH
Confidence            44455555555543 2445555555555555555554  556666666666666666666666655  555555566666


Q ss_pred             ccccchhhHHHHHHHHHHhhc
Q 031810           90 YCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      +|+..+ ....++++|.+.+.
T Consensus       414 ~A~~~~-~~~~~vk~Ll~~ga  433 (682)
T PHA02876        414 FALCGT-NPYMSVKTLIDRGA  433 (682)
T ss_pred             HHHHcC-CHHHHHHHHHhCCC
Confidence            655322 22334445544443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.61  E-value=6.7e-15  Score=116.51  Aligned_cols=99  Identities=17%  Similarity=0.196  Sum_probs=82.7

Q ss_pred             CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhC--------------------------
Q 031810           10 PKSKGVTPLHLAAQG---GHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER--------------------------   60 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~---g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~--------------------------   60 (152)
                      +|.+|+||||+|+..   |+.+++++|++.|++++..+..  |+||||+|+..|                          
T Consensus        28 ~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~--g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~  105 (661)
T PHA02917         28 RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWR--QLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNI  105 (661)
T ss_pred             cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCC--CCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcch
Confidence            488999999998665   7899999999999999988877  999999877533                          


Q ss_pred             ---------cHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHhhcCC
Q 031810           61 ---------KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        61 ---------~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                               +.+++++|+++|+++  +.+|..|.||||+++....+..+++++|.+.+...
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~Gadi--n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v  164 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEHGFDL--SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV  164 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHcCCCC--CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc
Confidence                     457788999999988  88999999999966544556689999999987653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.61  E-value=8.4e-15  Score=118.91  Aligned_cols=93  Identities=24%  Similarity=0.269  Sum_probs=82.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      +..+.++|+.|+..|+.++++.|++.|+++|..|..  |+||||+|+..|+.+++++|+++|+++  +.+|.+|.||||+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~--G~TpLh~Aa~~g~~~~v~~Ll~~gadi--n~~d~~G~TpL~~  597 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSK--GRTPLHIAASKGYEDCVLVLLKHACNV--HIRDANGNTALWN  597 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHcChHHHHHHHHhcCCCC--CCcCCCCCCHHHH
Confidence            455779999999999999999999999999999988  999999999999999999999999988  8899999999999


Q ss_pred             cccchhhHHHHHHHHHHhh
Q 031810           91 CPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~  109 (152)
                      |+.  .++.+++++|.+..
T Consensus       598 A~~--~g~~~iv~~L~~~~  614 (823)
T PLN03192        598 AIS--AKHHKIFRILYHFA  614 (823)
T ss_pred             HHH--hCCHHHHHHHHhcC
Confidence            984  34467777776544

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.60  E-value=4.7e-15  Score=87.46  Aligned_cols=70  Identities=37%  Similarity=0.558  Sum_probs=39.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810           14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus        14 g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      |++|||||+-.|+.+++++|+..|++++.+|+.  |.|||..|+..||.+||++|+..|++-  .....+|.+.
T Consensus        34 gR~plhyAAD~GQl~ilefli~iGA~i~~kDKy--gITPLLsAvwEGH~~cVklLL~~GAdr--t~~~PdG~~~  103 (117)
T KOG4214|consen   34 GRTPLHYAADYGQLSILEFLISIGANIQDKDKY--GITPLLSAVWEGHRDCVKLLLQNGADR--TIHAPDGTAL  103 (117)
T ss_pred             CcccchHhhhcchHHHHHHHHHhccccCCcccc--CCcHHHHHHHHhhHHHHHHHHHcCccc--ceeCCCchhH
Confidence            555666665555555556666555555555555  556665555555666666665555544  4444444443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.55  E-value=2.7e-14  Score=93.53  Aligned_cols=91  Identities=25%  Similarity=0.292  Sum_probs=81.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCC-ccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchh
Q 031810           18 LHLAAQGGHLEVMDVLLERGAD-IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEW   96 (152)
Q Consensus        18 L~~a~~~g~~~~~~~Ll~~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~   96 (152)
                      +..|+..+....|+.|++..++ +|.+|.+  |.||||-|+++|+.++++.|+..|++.  +.+...|+||||.|+  .+
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D--~YTpLHRAaYn~h~div~~ll~~gAn~--~a~T~~GWTPLhSAc--kW  140 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDED--EYTPLHRAAYNGHLDIVHELLLSGANK--EAKTNEGWTPLHSAC--KW  140 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccc--cccHHHHHHhcCchHHHHHHHHccCCc--ccccccCccchhhhh--cc
Confidence            5678888999999999988766 7899988  999999999999999999999999977  999999999999998  88


Q ss_pred             hHHHHHHHHHHhhcCCCc
Q 031810           97 AYEEMMRFQRESFSAGET  114 (152)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~  114 (152)
                      .+.+++-+|+..+.+-..
T Consensus       141 nN~~va~~LLqhgaDVnA  158 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADVNA  158 (228)
T ss_pred             cchhHHHHHHhccCcccc
Confidence            889999999998876433

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=7.2e-15  Score=80.76  Aligned_cols=47  Identities=51%  Similarity=0.696  Sum_probs=31.6

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHH
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA   56 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a   56 (152)
                      +.+|..|+||||+|++.|+.+++++|++.|++++.++..  |+||+|+|
T Consensus        10 n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~--G~Tpl~~A   56 (56)
T PF13857_consen   10 NAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKD--GQTPLHYA   56 (56)
T ss_dssp             T---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TT--S--HHHH-
T ss_pred             cCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCC--CCCHHHhC
Confidence            335999999999999999999999999999999999988  99999987

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.54  E-value=6.5e-14  Score=88.10  Aligned_cols=94  Identities=41%  Similarity=0.626  Sum_probs=83.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|..|.||||+|+..++.++++.|++.+.+.+..+..  |.+|+|.|+..+..+++++|+..++.+  +..+..|.||+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~--g~~~l~~a~~~~~~~~~~~ll~~~~~~--~~~~~~~~~~l~   78 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDND--GRTPLHLAAKNGHLEIVKLLLEKGADV--NARDKDGNTPLH   78 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCC--CCcHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCCHHH
Confidence            4678999999999999999999999999987777776  999999999999999999999999866  777889999999


Q ss_pred             ccccchhhHHHHHHHHHHhh
Q 031810           90 YCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~  109 (152)
                      +|+..  +..+++++|....
T Consensus        79 ~a~~~--~~~~~~~~L~~~~   96 (126)
T cd00204          79 LAARN--GNLDVVKLLLKHG   96 (126)
T ss_pred             HHHHc--CcHHHHHHHHHcC
Confidence            99844  4478898888865

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.54  E-value=1.9e-14  Score=112.40  Aligned_cols=105  Identities=24%  Similarity=0.310  Sum_probs=86.1

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-cCC-CccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCC-CCCC
Q 031810            4 NVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE-RGA-DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLP-DDIN   80 (152)
Q Consensus         4 n~~~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~-~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~-~~~~   80 (152)
                      ++..+.++.++.||||.|++.|+..+|+.|++ .+. ..|..|-.  |.||||.|+..||..++++|+..|+... -...
T Consensus       296 Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~--g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~  373 (929)
T KOG0510|consen  296 GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLH--GMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEA  373 (929)
T ss_pred             CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcccccccccc--CCCchhhhhhcCHHHHHHHHHhcChhhhccccc
Confidence            34455568999999999999999999999998 553 35666666  9999999999999999999999999762 0144


Q ss_pred             CCCCCCcccccccchhhHHHHHHHHHHhhcCC
Q 031810           81 DSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        81 ~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |.+|.||||.|+  ..++..++++|...+..-
T Consensus       374 D~dg~TaLH~Aa--~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  374 DSDGNTALHLAA--KYGNTSAVQKLISHGADI  403 (929)
T ss_pred             ccCCchhhhHHH--HhccHHHHHHHHHcCCce
Confidence            999999999999  445578888888777653

>PHA02730 ankyrin-like protein; Provisional

Probab=99.52  E-value=4.4e-14  Score=110.70  Aligned_cols=99  Identities=16%  Similarity=0.113  Sum_probs=81.6

Q ss_pred             CCCCCCCcHHHH---HHHcC---------CHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCC
Q 031810            9 GPKSKGVTPLHL---AAQGG---------HLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLP   76 (152)
Q Consensus         9 ~~d~~g~t~L~~---a~~~g---------~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~   76 (152)
                      .+|..|.||||.   +...+         ..+++++|+++|+++|.++..  |.||||+|+..++.+++++|+.+|+++ 
T Consensus       412 ~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~--G~TPLh~Aa~~~~~eive~LI~~GAdI-  488 (672)
T PHA02730        412 HVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNE--NKTLLYYAVDVNNIQFARRLLEYGASV-  488 (672)
T ss_pred             ccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCC--CCCHHHHHHHhCCHHHHHHHHHCCCCC-
Confidence            348889999984   33222         235699999999999999988  999999999999999999999999988 


Q ss_pred             CCCCCC-CCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           77 DDINDS-RFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        77 ~~~~~~-~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                       +..+. .|.||||+|+....+..+++++|++.+..
T Consensus       489 -N~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~  523 (672)
T PHA02730        489 -NTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPT  523 (672)
T ss_pred             -CCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCC
Confidence             78886 58999999974333457889888887755

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.52  E-value=5.1e-14  Score=99.14  Aligned_cols=78  Identities=36%  Similarity=0.438  Sum_probs=74.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      +.-..||||+|+..|+.++|+.|+++.+++|..+..  |.||||+||..|...+++-|+..|+.+  +.-++.|.|||..
T Consensus        64 nmgddtplhlaaahghrdivqkll~~kadvnavneh--gntplhyacfwgydqiaedli~~ga~v--~icnk~g~tpldk  139 (448)
T KOG0195|consen   64 NMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEH--GNTPLHYACFWGYDQIAEDLISCGAAV--NICNKKGMTPLDK  139 (448)
T ss_pred             cCCCCcchhhhhhcccHHHHHHHHHHhcccchhhcc--CCCchhhhhhhcHHHHHHHHHhcccee--eecccCCCCchhh
Confidence            666789999999999999999999999999999988  999999999999999999999999998  8899999999999


Q ss_pred             cc
Q 031810           91 CP   92 (152)
Q Consensus        91 a~   92 (152)
                      |-
T Consensus       140 ak  141 (448)
T KOG0195|consen  140 AK  141 (448)
T ss_pred             hc
Confidence            85

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.52  E-value=6.2e-14  Score=114.28  Aligned_cols=105  Identities=32%  Similarity=0.485  Sum_probs=84.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      ...|.+++|.+...+...+++.++++|++++.++..  |.||||.||..|+.++|++|+++|+++  +.++..|+||||.
T Consensus       504 ~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r--~~TpLh~A~~~g~v~~VkfLLe~gAdv--~ak~~~G~TPLH~  579 (1143)
T KOG4177|consen  504 AKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGR--GYTPLHVAVHYGNVDLVKFLLEHGADV--NAKDKLGYTPLHQ  579 (1143)
T ss_pred             chhccchhhhhhhhhhHHHHHHHhhcCCceehhccc--ccchHHHHHhcCCchHHHHhhhCCccc--cccCCCCCChhhH
Confidence            455666777777777777777777778888888877  899999999999999999999999998  8899999999999


Q ss_pred             cccchhhHHHHHHHHHHhhcCCCc-cCCchhh
Q 031810           91 CPSLEWAYEEMMRFQRESFSAGET-SYSSEKL  121 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~  121 (152)
                      |+..+  ..+++.+|.+.+...+. +......
T Consensus       580 Aa~~G--~~~i~~LLlk~GA~vna~d~~g~Tp  609 (1143)
T KOG4177|consen  580 AAQQG--HNDIAELLLKHGASVNAADLDGFTP  609 (1143)
T ss_pred             HHHcC--hHHHHHHHHHcCCCCCcccccCcch
Confidence            99655  57899999998877433 3344443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=1.4e-13  Score=94.80  Aligned_cols=94  Identities=34%  Similarity=0.426  Sum_probs=65.1

Q ss_pred             CCCCCCCcHHHHHHHcCC-----HHHHHHHHhcCC---CccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCC
Q 031810            9 GPKSKGVTPLHLAAQGGH-----LEVMDVLLERGA---DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN   80 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~-----~~~~~~Ll~~~~---~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~   80 (152)
                      .+|..|.||||+|+..++     .++++.|++.|+   ..+..+..  |+||||+|+..|+.+++++|++.|+++  ...
T Consensus       101 ~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~--g~tpl~~A~~~~~~~~~~~ll~~~~~~--~~~  176 (235)
T COG0666         101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED--GNTPLHWAALNGDADIVELLLEAGADP--NSR  176 (235)
T ss_pred             cccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC--CCchhHHHHHcCchHHHHHHHhcCCCC--ccc
Confidence            347777777777777777     777777777777   44444665  777777777777777777777777766  666


Q ss_pred             CCCCCCcccccccchhhHHHHHHHHHHh
Q 031810           81 DSRFNPPLHYCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        81 ~~~g~tpl~~a~~~~~~~~~~~~~l~~~  108 (152)
                      +..|.|++++|+  ..+...++..+...
T Consensus       177 ~~~g~t~l~~a~--~~~~~~~~~~l~~~  202 (235)
T COG0666         177 NSYGVTALDPAA--KNGRIELVKLLLDK  202 (235)
T ss_pred             ccCCCcchhhhc--ccchHHHHHHHHhc
Confidence            777777777776  33335566555554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.51  E-value=6.2e-14  Score=112.89  Aligned_cols=82  Identities=37%  Similarity=0.364  Sum_probs=73.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccc------------CCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCC
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK------------GACGWTPLHTAAKERKKEAVRFLIENGAFLPDD   78 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~------------~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~   78 (152)
                      +..|.||||+|+..|+.+++++|++.|++++..+.            ...|+||||.|+..++.+++++|++.|+++  +
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi--n  202 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI--L  202 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch--h
Confidence            46799999999999999999999999999986532            123899999999999999999999999988  8


Q ss_pred             CCCCCCCCcccccccc
Q 031810           79 INDSRFNPPLHYCPSL   94 (152)
Q Consensus        79 ~~~~~g~tpl~~a~~~   94 (152)
                      .+|..|+||||+|+..
T Consensus       203 ~~d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       203 TADSLGNTLLHLLVME  218 (743)
T ss_pred             hHhhhhhHHHHHHHhh
Confidence            8999999999999843

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.51  E-value=5.4e-14  Score=111.73  Aligned_cols=86  Identities=30%  Similarity=0.389  Sum_probs=79.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchh
Q 031810           17 PLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEW   96 (152)
Q Consensus        17 ~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~   96 (152)
                      .|+.|+..|+.+.++.|++.|+++|..+..  |+||||+|+..|+.+++++|++.|+++  +.+|..|.||||+|+  ..
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~--G~TpLh~Aa~~g~~eiv~~LL~~Gadv--n~~d~~G~TpLh~A~--~~  158 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYD--GRTPLHIACANGHVQVVRVLLEFGADP--TLLDKDGKTPLELAE--EN  158 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCC--CCcHHHHHHHCCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHH--HC
Confidence            478899999999999999999999999887  999999999999999999999999988  889999999999998  44


Q ss_pred             hHHHHHHHHHHh
Q 031810           97 AYEEMMRFQRES  108 (152)
Q Consensus        97 ~~~~~~~~l~~~  108 (152)
                      ++.+++++|...
T Consensus       159 g~~~iv~~Ll~~  170 (664)
T PTZ00322        159 GFREVVQLLSRH  170 (664)
T ss_pred             CcHHHHHHHHhC
Confidence            557899999887

>PHA02795 ankyrin-like protein; Provisional

Probab=99.50  E-value=2.7e-13  Score=101.87  Aligned_cols=95  Identities=11%  Similarity=-0.019  Sum_probs=70.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcc-cccc---CCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           14 GVTPLHLAAQGGHLEVMDVLLERGADID-ARTK---GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        14 g~t~L~~a~~~g~~~~~~~Ll~~~~~~~-~~~~---~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +.||+|.|+..++.+++++|+++|++.. ..+.   ...+.+++|.|...++.+++++|+++|+++  +.++..|.||||
T Consensus       149 ~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI--N~kD~~G~TpLh  226 (437)
T PHA02795        149 CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI--NQLDAGGRTLLY  226 (437)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc--CcCCCCCCCHHH
Confidence            4677777777777777777777776432 1110   011567788888888888899999999888  888999999999


Q ss_pred             ccccchhhHHHHHHHHHHhhcCC
Q 031810           90 YCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      +|+  ..++.+++++|.+.+...
T Consensus       227 ~Aa--~~g~~eiVelLL~~GAdI  247 (437)
T PHA02795        227 RAI--YAGYIDLVSWLLENGANV  247 (437)
T ss_pred             HHH--HcCCHHHHHHHHHCCCCC
Confidence            998  445578899988887653

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.50  E-value=6.7e-14  Score=82.62  Aligned_cols=90  Identities=20%  Similarity=0.251  Sum_probs=79.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccch
Q 031810           16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLE   95 (152)
Q Consensus        16 t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~   95 (152)
                      -.+.++++.|..+-|+..+..|.++|..- .  |++|||+|+-.|+.+++++|+..|+++  +.+|+.|.|||..|+  .
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-g--gR~plhyAAD~GQl~ilefli~iGA~i--~~kDKygITPLLsAv--w   76 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-G--GRTPLHYAADYGQLSILEFLISIGANI--QDKDKYGITPLLSAV--W   76 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-C--CcccchHhhhcchHHHHHHHHHhcccc--CCccccCCcHHHHHH--H
Confidence            35678899999999999999998888653 4  899999999999999999999999988  899999999998887  6


Q ss_pred             hhHHHHHHHHHHhhcCC
Q 031810           96 WAYEEMMRFQRESFSAG  112 (152)
Q Consensus        96 ~~~~~~~~~l~~~~~~~  112 (152)
                      .+..+++++|++.+.+.
T Consensus        77 EGH~~cVklLL~~GAdr   93 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADR   93 (117)
T ss_pred             HhhHHHHHHHHHcCccc
Confidence            67789999999887664

>PHA02792 ankyrin-like protein; Provisional

Probab=99.48  E-value=2e-13  Score=106.19  Aligned_cols=78  Identities=19%  Similarity=0.231  Sum_probs=65.5

Q ss_pred             CCC--CCcHHHHHHHcCCH---HHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCC
Q 031810           11 KSK--GVTPLHLAAQGGHL---EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFN   85 (152)
Q Consensus        11 d~~--g~t~L~~a~~~g~~---~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~   85 (152)
                      |..  |.||||.|+.....   +++++|+++|+++|.++..  |+||||+|+..++.+++++|+++|+++  +.++..|.
T Consensus       369 D~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~--G~TPLh~Aa~~~n~eivelLLs~GADI--N~kD~~G~  444 (631)
T PHA02792        369 DDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKH--GRSILYYCIESHSVSLVEWLIDNGADI--NITTKYGS  444 (631)
T ss_pred             cCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccccccc--CcchHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCC
Confidence            544  46899987776544   3578888999999998887  999999999999999999999999987  78899999


Q ss_pred             Ccccccc
Q 031810           86 PPLHYCP   92 (152)
Q Consensus        86 tpl~~a~   92 (152)
                      |||++|+
T Consensus       445 TpL~~A~  451 (631)
T PHA02792        445 TCIGICV  451 (631)
T ss_pred             CHHHHHH
Confidence            9999986

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=7.1e-14  Score=76.24  Aligned_cols=54  Identities=35%  Similarity=0.566  Sum_probs=43.3

Q ss_pred             CchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHH
Q 031810           49 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQR  106 (152)
Q Consensus        49 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~  106 (152)
                      |+||||+|+..|+.+++++|++.|.++  +.+|.+|.||||+|+  ..++.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di--n~~d~~g~t~lh~A~--~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI--NAQDEDGRTPLHYAA--KNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT--T-B-TTS--HHHHHH--HTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHH--HccCHHHHHHHC
Confidence            689999999999999999999999987  888999999999999  555688888874

...

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.47  E-value=5.2e-14  Score=95.47  Aligned_cols=92  Identities=22%  Similarity=0.293  Sum_probs=80.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      .++..++|++|++.|..++|++|+..+.++|..|.+  |.|||-+|+..++.+|++.|+..|+++  ...+..|.+++..
T Consensus       190 gk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwN--GgTpLlyAvrgnhvkcve~Ll~sGAd~--t~e~dsGy~~mdl  265 (296)
T KOG0502|consen  190 GKYRESALSLATRGGYTDIVELLLTREVDVNVYDWN--GGTPLLYAVRGNHVKCVESLLNSGADV--TQEDDSGYWIMDL  265 (296)
T ss_pred             hhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccC--CCceeeeeecCChHHHHHHHHhcCCCc--ccccccCCcHHHH
Confidence            455779999999999999999999999999999998  999999999999999999999999998  8999999999999


Q ss_pred             cccchhhHHHHHHHHHHh
Q 031810           91 CPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~  108 (152)
                      |..+++  ..+-+.+..+
T Consensus       266 AValGy--r~Vqqvie~h  281 (296)
T KOG0502|consen  266 AVALGY--RIVQQVIEKH  281 (296)
T ss_pred             HHHhhh--HHHHHHHHHH
Confidence            985554  4333444333

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.45  E-value=2.6e-13  Score=106.13  Aligned_cols=97  Identities=33%  Similarity=0.355  Sum_probs=83.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccC---------------------CCCchHHHHHHhhCcHHHHHHHH
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG---------------------ACGWTPLHTAAKERKKEAVRFLI   69 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~---------------------~~g~t~l~~a~~~~~~~~~~~Ll   69 (152)
                      ..+|.||||.|+.+.+.++|+.|++.||||+.+...                     .+|+.||-+|++.++++|+++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            567999999999999999999999999998855322                     23789999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           70 ENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        70 ~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      ++|||+  +.+|.+|+|.||..+  -....++-.++++.+.+
T Consensus       261 ~~gAd~--~aqDS~GNTVLH~lV--i~~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  261 AHGADP--NAQDSNGNTVLHMLV--IHFVTEMYDLALELGAN  298 (782)
T ss_pred             hcCCCC--CccccCCChHHHHHH--HHHHHHHHHHHHhcCCC
Confidence            999988  999999999999997  44456777888887766

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.44  E-value=2.5e-13  Score=95.46  Aligned_cols=96  Identities=25%  Similarity=0.376  Sum_probs=83.2

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      ..|..|+++|..|+..|+.+++++|++.|+|+|...... +.||||+|+..|+.++.++|++.|+..  ...+.-|+|+-
T Consensus        40 ~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~-~YTpLmFAALSGn~dvcrllldaGa~~--~~vNsvgrTAa  116 (396)
T KOG1710|consen   40 QRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGT-LYTPLMFAALSGNQDVCRLLLDAGARM--YLVNSVGRTAA  116 (396)
T ss_pred             ccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccc-cccHHHHHHHcCCchHHHHHHhccCcc--ccccchhhhHH
Confidence            359999999999999999999999999999999765432 799999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHhh
Q 031810           89 HYCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~  109 (152)
                      ..|+-.+  +.+++.++..+.
T Consensus       117 qmAAFVG--~H~CV~iINN~~  135 (396)
T KOG1710|consen  117 QMAAFVG--HHECVAIINNHI  135 (396)
T ss_pred             HHHHHhc--chHHHHHHhccc
Confidence            9998333  467887775544

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.44  E-value=3.2e-13  Score=101.33  Aligned_cols=59  Identities=29%  Similarity=0.384  Sum_probs=40.8

Q ss_pred             CchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           49 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        49 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |.|.||.|+..|..++.++|+..|.++  +.+|.+|+||||.|+  .++..++.++|.+++..
T Consensus       198 G~T~lHvAaa~Gy~e~~~lLl~ag~~~--~~~D~dgWtPlHAAA--~Wg~~~~~elL~~~ga~  256 (527)
T KOG0505|consen  198 GATALHVAAANGYTEVAALLLQAGYSV--NIKDYDGWTPLHAAA--HWGQEDACELLVEHGAD  256 (527)
T ss_pred             cchHHHHHHhhhHHHHHHHHHHhccCc--ccccccCCCcccHHH--HhhhHhHHHHHHHhhcc
Confidence            566777777677777777777776665  777777777777777  55566677777666554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.42  E-value=2.7e-13  Score=105.53  Aligned_cols=101  Identities=18%  Similarity=0.144  Sum_probs=79.0

Q ss_pred             CCCCCCCCCCCCCCCcHHHHHHH-cCCHHHHHHHHhcCCCcc------------------------------------cc
Q 031810            1 MDVNVAAWGPKSKGVTPLHLAAQ-GGHLEVMDVLLERGADID------------------------------------AR   43 (152)
Q Consensus         1 ~d~n~~~~~~d~~g~t~L~~a~~-~g~~~~~~~Ll~~~~~~~------------------------------------~~   43 (152)
                      ||||..    +..|.||+|+|+. .++.+++++|++.|+++.                                    ..
T Consensus        96 AdvN~~----~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  171 (631)
T PHA02792         96 LEINSI----KNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYD  171 (631)
T ss_pred             CCcccc----cCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccC
Confidence            455554    6668899999865 689999999999998632                                    22


Q ss_pred             ccCCCCchHHHHHHhhC-------cHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHhh
Q 031810           44 TKGACGWTPLHTAAKER-------KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        44 ~~~~~g~t~l~~a~~~~-------~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~  109 (152)
                      +..  |.||||+|+..+       +.+++++|+++|+++  +..|.+|.||||+|+.......+++++|....
T Consensus       172 ~~~--g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~--~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~  240 (631)
T PHA02792        172 DRM--GKTVLYYYIITRSQDGYATSLDVINYLISHEKEM--RYYTYREHTTLYYYVDKCDIKREIFDALFDSN  240 (631)
T ss_pred             CCC--CCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc--CccCCCCChHHHHHHHcccchHHHHHHHHhcc
Confidence            222  889999999988       789999999999987  78888999999999854433678888887753

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.42  E-value=1.8e-12  Score=81.39  Aligned_cols=91  Identities=41%  Similarity=0.677  Sum_probs=79.6

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      ..+..|.||+|+|+..++.++++.|+..+.+++..+..  |.||+|+|+..++.+++++|+..+.+.  ...+..|.||+
T Consensus        35 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--~~~~l~~a~~~~~~~~~~~L~~~~~~~--~~~~~~~~~~l  110 (126)
T cd00204          35 AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKD--GNTPLHLAARNGNLDVVKLLLKHGADV--NARDKDGRTPL  110 (126)
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCC--CCCHHHHHHHcCcHHHHHHHHHcCCCC--cccCCCCCCHH
Confidence            35788999999999999999999999999888887766  899999999999999999999999877  77889999999


Q ss_pred             cccccchhhHHHHHHHH
Q 031810           89 HYCPSLEWAYEEMMRFQ  105 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l  105 (152)
                      ++|...  ...+++++|
T Consensus       111 ~~~~~~--~~~~~~~~L  125 (126)
T cd00204         111 HLAAKN--GHLEVVKLL  125 (126)
T ss_pred             HHHHhc--CCHHHHHHh
Confidence            999854  345666654

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.41  E-value=1.1e-12  Score=104.35  Aligned_cols=80  Identities=36%  Similarity=0.433  Sum_probs=71.4

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHc-------CCCCCCCCC
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN-------GAFLPDDIN   80 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-------ga~~~~~~~   80 (152)
                      +.+|..|.||||+|+..|+.+++++|++.|++++..+..  |.||||+|+..++.+++++|+.+       |++.  +..
T Consensus       109 n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~--G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~--~~~  184 (664)
T PTZ00322        109 NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKD--GKTPLELAEENGFREVVQLLSRHSQCHFELGANA--KPD  184 (664)
T ss_pred             CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCC--Ccc
Confidence            345899999999999999999999999999999999988  99999999999999999999998       7766  667


Q ss_pred             CCCCCCccccc
Q 031810           81 DSRFNPPLHYC   91 (152)
Q Consensus        81 ~~~g~tpl~~a   91 (152)
                      +..|.+|+..+
T Consensus       185 ~~~g~~~~~~~  195 (664)
T PTZ00322        185 SFTGKPPSLED  195 (664)
T ss_pred             ccCCCCccchh
Confidence            77777776544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.36  E-value=5e-12  Score=87.04  Aligned_cols=97  Identities=32%  Similarity=0.475  Sum_probs=84.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCc-----HHHHHHHHHcCC--CCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK-----KEAVRFLIENGA--FLPDDINDS   82 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~ga--~~~~~~~~~   82 (152)
                      .+..+.++++.++..+....+..++..|++++..+..  |.||+|+|+..++     .++++.|++.|+  +. ...++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~-~~~~~~  145 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDAD--GDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV-NNLRDE  145 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCC--CCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC-ccccCC
Confidence            4566899999999999999999999999999999988  9999999999999     999999999999  33 277799


Q ss_pred             CCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           83 RFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        83 ~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      .|.||||+|+..+.  .+++.++++.+..
T Consensus       146 ~g~tpl~~A~~~~~--~~~~~~ll~~~~~  172 (235)
T COG0666         146 DGNTPLHWAALNGD--ADIVELLLEAGAD  172 (235)
T ss_pred             CCCchhHHHHHcCc--hHHHHHHHhcCCC
Confidence            99999999984444  5788888887654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=2.1e-12  Score=97.20  Aligned_cols=87  Identities=32%  Similarity=0.300  Sum_probs=73.3

Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhH
Q 031810           19 HLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAY   98 (152)
Q Consensus        19 ~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~   98 (152)
                      .-|+..|-+++|+..+..-.|+...+..  |.|+||-|++.||.+||++|++.|+++  +..|.+|+||||+|+..+.  
T Consensus       555 LDaaLeGEldlVq~~i~ev~DpSqpNdE--GITaLHNAiCaghyeIVkFLi~~ganV--Na~DSdGWTPLHCAASCNn--  628 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDPSQPNDE--GITALHNAICAGHYEIVKFLIEFGANV--NAADSDGWTPLHCAASCNN--  628 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCCCCCCcc--chhHHhhhhhcchhHHHHHHHhcCCcc--cCccCCCCchhhhhhhcCc--
Confidence            3467789999999999888888877766  999999999999999999999999999  9999999999999984333  


Q ss_pred             HHHHHHHHHhhcC
Q 031810           99 EEMMRFQRESFSA  111 (152)
Q Consensus        99 ~~~~~~l~~~~~~  111 (152)
                      ..+.+.|.+++..
T Consensus       629 v~~ckqLVe~Gaa  641 (752)
T KOG0515|consen  629 VPMCKQLVESGAA  641 (752)
T ss_pred             hHHHHHHHhccce
Confidence            4566666665543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.36  E-value=1.8e-12  Score=100.93  Aligned_cols=118  Identities=23%  Similarity=0.233  Sum_probs=96.3

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|.+|.|+||.|+..|+..++++|+++.+-+...+..  |.+|||+|+-.|+.++++.|+.++..+  +..+..|.|||
T Consensus        44 ~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~k--g~~plhlaaw~g~~e~vkmll~q~d~~--na~~~e~~tpl  119 (854)
T KOG0507|consen   44 LQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTK--GILPLHLAAWNGNLEIVKMLLLQTDIL--NAVNIENETPL  119 (854)
T ss_pred             ccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhcc--CcceEEehhhcCcchHHHHHHhcccCC--CcccccCcCcc
Confidence            35889999999999999999999999999988888866  999999999999999999999998766  88899999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcCCCccC-CchhhhHHHHHHhhhh
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSAGETSY-SSEKLNALSRLLVHMM  132 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~  132 (152)
                      |.|+  .++..+++++|+.+..+..... ..+.....+..++...
T Consensus       120 hlaa--qhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen  120 HLAA--QHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             chhh--hhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhH
Confidence            9999  5555789999999887754433 4444444444444333

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.28  E-value=1.7e-11  Score=96.19  Aligned_cols=93  Identities=27%  Similarity=0.312  Sum_probs=83.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 031810           12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC   91 (152)
Q Consensus        12 ~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a   91 (152)
                      ..|..||..|++.++.+++++|+++|+|++.+|.+  |+|.||..+.+...++-.+++++|++.....+|..|.|||..|
T Consensus       238 YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~--GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLA  315 (782)
T KOG3676|consen  238 YFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSN--GNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLA  315 (782)
T ss_pred             eeccCchHHHHHcCCHHHHHHHHhcCCCCCccccC--CChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHH
Confidence            35889999999999999999999999999999999  9999999999988999999999999822389999999999999


Q ss_pred             ccchhhHHHHHHHHHHh
Q 031810           92 PSLEWAYEEMMRFQRES  108 (152)
Q Consensus        92 ~~~~~~~~~~~~~l~~~  108 (152)
                      +  .-+..++.+.+.+.
T Consensus       316 a--klGk~emf~~ile~  330 (782)
T KOG3676|consen  316 A--KLGKKEMFQHILER  330 (782)
T ss_pred             H--HhhhHHHHHHHHHh
Confidence            9  54557888777776

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.28  E-value=2.6e-12  Score=99.98  Aligned_cols=93  Identities=29%  Similarity=0.379  Sum_probs=83.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|..|.+|||+|++.|+.+++++++..+..+|...-.  |.||||.|++.|+.+++.+|+.+|++.  -.++..+.|+|.
T Consensus        78 ~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e--~~tplhlaaqhgh~dvv~~Ll~~~adp--~i~nns~~t~ld  153 (854)
T KOG0507|consen   78 CDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIE--NETPLHLAAQHGHLEVVFYLLKKNADP--FIRNNSKETVLD  153 (854)
T ss_pred             hhccCcceEEehhhcCcchHHHHHHhcccCCCccccc--CcCccchhhhhcchHHHHHHHhcCCCc--cccCcccccHHH
Confidence            3677999999999999999999999999888887766  999999999999999999999999987  889999999999


Q ss_pred             ccccchhhHHHHHHHHHHh
Q 031810           90 YCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~  108 (152)
                      .|++++.  ..+++.|...
T Consensus       154 lA~qfgr--~~Vvq~ll~~  170 (854)
T KOG0507|consen  154 LASRFGR--AEVVQMLLQK  170 (854)
T ss_pred             HHHHhhh--hHHHHHHhhh
Confidence            9996655  6788877765

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.28  E-value=6.1e-12  Score=94.58  Aligned_cols=81  Identities=36%  Similarity=0.503  Sum_probs=73.2

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +..+.+|.|+||-+|.-.+.+||++|+++|++||..|..  ||||+|.|+.+|+..++.+|+.+|+++  ...+..|..|
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e--~wtPlhaaascg~~~i~~~li~~gA~~--~avNsdg~~P  142 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNE--GWTPLHAAASCGYLNIVEYLIQHGANL--LAVNSDGNMP  142 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccc--cCCcchhhcccccHHHHHHHHHhhhhh--hhccCCCCCc
Confidence            445788999999999999999999999999999999888  999999999999999999999999988  7888899999


Q ss_pred             ccccc
Q 031810           88 LHYCP   92 (152)
Q Consensus        88 l~~a~   92 (152)
                      +..+.
T Consensus       143 ~dl~e  147 (527)
T KOG0505|consen  143 YDLAE  147 (527)
T ss_pred             ccccc
Confidence            98875

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.27  E-value=1.2e-11  Score=99.77  Aligned_cols=93  Identities=24%  Similarity=0.180  Sum_probs=76.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhC---------cHHHHHHHHHcCCCCC-C----
Q 031810           12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER---------KKEAVRFLIENGAFLP-D----   77 (152)
Q Consensus        12 ~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~---------~~~~~~~Ll~~ga~~~-~----   77 (152)
                      ..|.||||.|+..|+.+++++|++.|++++..|..  |+||||+|+..+         ...+.+++++.++... +    
T Consensus       173 ~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~--g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~  250 (743)
T TIGR00870       173 YHGESPLNAAACLGSPSIVALLSEDPADILTADSL--GNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELE  250 (743)
T ss_pred             cccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhh--hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhh
Confidence            46999999999999999999999999999999988  999999999886         2346677777666531 1    


Q ss_pred             CCCCCCCCCcccccccchhhHHHHHHHHHHh
Q 031810           78 DINDSRFNPPLHYCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        78 ~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~  108 (152)
                      ...|.+|.||||+|+  ..++.++++++.+.
T Consensus       251 ~i~N~~g~TPL~~A~--~~g~~~l~~lLL~~  279 (743)
T TIGR00870       251 VILNHQGLTPLKLAA--KEGRIVLFRLKLAI  279 (743)
T ss_pred             hhcCCCCCCchhhhh--hcCCccHHHHHHHH
Confidence            456889999999998  44457888887774

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.25  E-value=2.2e-12  Score=101.50  Aligned_cols=82  Identities=26%  Similarity=0.363  Sum_probs=76.4

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +-+|..|+|+||+++..+..+++++|+.+|++++.+|... |+||||-|.+.|+++|+-.||.+|+.+  ..+|+.|..|
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ES-G~taLHRaiyyG~idca~lLL~~g~SL--~i~Dkeglsp  122 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEES-GYTALHRAIYYGNIDCASLLLSKGRSL--RIKDKEGLSP  122 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccc-cchHhhHhhhhchHHHHHHHHhcCCce--EEecccCCCH
Confidence            3458999999999999999999999999999999999875 999999999999999999999999977  9999999999


Q ss_pred             ccccc
Q 031810           88 LHYCP   92 (152)
Q Consensus        88 l~~a~   92 (152)
                      |..-.
T Consensus       123 lq~~~  127 (1267)
T KOG0783|consen  123 LQFLS  127 (1267)
T ss_pred             HHHHh
Confidence            97665

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.18  E-value=1e-10  Score=87.57  Aligned_cols=86  Identities=30%  Similarity=0.272  Sum_probs=76.4

Q ss_pred             CCCCCCCCcH------HHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCC
Q 031810            8 WGPKSKGVTP------LHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND   81 (152)
Q Consensus         8 ~~~d~~g~t~------L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~   81 (152)
                      +.+|.+|.|.      ||-.++.|+.+.+=.|+..|+++|..+... |.||||.|+..|+.-.+++|+-+|+|+  ...|
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpek-g~TpLHvAAk~Gq~~Q~ElL~vYGAD~--~a~d  197 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEK-GNTPLHVAAKAGQILQAELLAVYGADP--GAQD  197 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCccc-CCchhHHHHhccchhhhhHHhhccCCC--CCCC
Confidence            4467777776      788899999999989999999999888765 899999999999999999999999988  9999


Q ss_pred             CCCCCcccccccchh
Q 031810           82 SRFNPPLHYCPSLEW   96 (152)
Q Consensus        82 ~~g~tpl~~a~~~~~   96 (152)
                      .+|.||+.+|...++
T Consensus       198 ~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  198 SSGMTPVDYARQGGH  212 (669)
T ss_pred             CCCCcHHHHHHhcCc
Confidence            999999999975443

>PF13606 Ank_3: Ankyrin repeat

Probab=99.07  E-value=2.5e-10  Score=54.36  Aligned_cols=27  Identities=48%  Similarity=0.706  Sum_probs=15.0

Q ss_pred             CchHHHHHHhhCcHHHHHHHHHcCCCC
Q 031810           49 GWTPLHTAAKERKKEAVRFLIENGAFL   75 (152)
Q Consensus        49 g~t~l~~a~~~~~~~~~~~Ll~~ga~~   75 (152)
                      |+||||+||..|+.+++++|+++|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            455555555555555555555555544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.01  E-value=7.5e-10  Score=53.94  Aligned_cols=30  Identities=60%  Similarity=0.975  Sum_probs=15.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccc
Q 031810           14 GVTPLHLAAQGGHLEVMDVLLERGADIDAR   43 (152)
Q Consensus        14 g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~   43 (152)
                      |+||||+|+..|+.+++++|++.|++++.+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCB
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCC
Confidence            445555555555555555555555554443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.98  E-value=1.7e-09  Score=76.45  Aligned_cols=95  Identities=21%  Similarity=0.212  Sum_probs=80.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccccccc
Q 031810           14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS   93 (152)
Q Consensus        14 g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~   93 (152)
                      -..||.-+.-.++.+-...|++.--++|..|..  |.++|..|++.|+.+++++|++.|+|++ .-++..+.||||+|+.
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~s--GMs~LahAaykGnl~~v~lll~~gaDvN-~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPS--GMSVLAHAAYKGNLTLVELLLELGADVN-DKQHGTLYTPLMFAAL   88 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCC--cccHHHHHHhcCcHHHHHHHHHhCCCcC-cccccccccHHHHHHH
Confidence            356899999999999888888876668999888  9999999999999999999999999997 3466778999999996


Q ss_pred             chhhHHHHHHHHHHhhcCCC
Q 031810           94 LEWAYEEMMRFQRESFSAGE  113 (152)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~  113 (152)
                      +++  .++-.++.+.+....
T Consensus        89 SGn--~dvcrllldaGa~~~  106 (396)
T KOG1710|consen   89 SGN--QDVCRLLLDAGARMY  106 (396)
T ss_pred             cCC--chHHHHHHhccCccc
Confidence            554  788888888876643

>PF13606 Ank_3: Ankyrin repeat

Probab=98.97  E-value=1.2e-09  Score=51.98  Aligned_cols=30  Identities=57%  Similarity=0.961  Sum_probs=28.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccc
Q 031810           13 KGVTPLHLAAQGGHLEVMDVLLERGADIDA   42 (152)
Q Consensus        13 ~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~   42 (152)
                      +|+||||+|++.|+.+++++|++.|+++|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            489999999999999999999999999873

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.93  E-value=1.7e-09  Score=80.91  Aligned_cols=96  Identities=24%  Similarity=0.359  Sum_probs=83.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      +.++..++++|++.|+.+.++.+.-.|.|++.+|.+  .+|+||.|+..|+++++++|++... +++..+|..|+|||.-
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD--~RTaLHvAAaEG~v~v~kfl~~~~k-v~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYD--DRTALHVAAAEGHVEVVKFLLNACK-VDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccc--cchhheeecccCceeHHHHHHHHHc-CCCChhhccCCCcchH
Confidence            344567899999999999999999999999999988  8999999999999999999998743 4558899999999999


Q ss_pred             cccchhhHHHHHHHHHHhhcC
Q 031810           91 CPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |..+++  .+++++|.+....
T Consensus       580 A~~F~h--~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  580 AKHFKH--KEVVKLLEEAQYP  598 (622)
T ss_pred             hHhcCc--HHHHHHHHHHhcc
Confidence            986555  7899999888764

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.90  E-value=1.6e-08  Score=74.01  Aligned_cols=72  Identities=22%  Similarity=0.261  Sum_probs=64.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 031810           16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC   91 (152)
Q Consensus        16 t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a   91 (152)
                      --|++||+.|+.+.++.|++.|.++|..|++  ..+||.+|+.+||.+++++|++.||-.  ..-...|..+++-|
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~f--D~spL~lAsLcGHe~vvklLLenGAiC--~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRF--DSSPLYLASLCGHEDVVKLLLENGAIC--SRDTFDGDRCHYGA  109 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcc--cccHHHHHHHcCcHHHHHHHHHcCCcc--cccccCcchhhhhh
Confidence            3589999999999999999999999999988  889999999999999999999999966  66667787766444

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.90  E-value=3.4e-09  Score=51.56  Aligned_cols=31  Identities=39%  Similarity=0.643  Sum_probs=28.5

Q ss_pred             CchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCC
Q 031810           49 GWTPLHTAAKERKKEAVRFLIENGAFLPDDIND   81 (152)
Q Consensus        49 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~   81 (152)
                      |.||||+|+..++.+++++|+++|+++  +.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~--~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI--NARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT--TCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC--CCCC
Confidence            899999999999999999999999988  6554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.84  E-value=8.6e-09  Score=78.74  Aligned_cols=91  Identities=21%  Similarity=0.217  Sum_probs=72.5

Q ss_pred             HHHHHHcCCHHHHHHHHhcCC--CccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccch
Q 031810           18 LHLAAQGGHLEVMDVLLERGA--DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLE   95 (152)
Q Consensus        18 L~~a~~~g~~~~~~~Ll~~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~   95 (152)
                      |..|+...+...+-+|+.+|.  .+|....+..|+|+||+||..|++.+.++|+-+|+|+  ..+|.+|+|+|.||.  .
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv--~~rda~g~t~l~yar--~  703 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV--MARDAHGRTALFYAR--Q  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc--eecccCCchhhhhHh--h
Confidence            344555566677788888884  3454444444899999999999999999999999998  899999999999997  4


Q ss_pred             hhHHHHHHHHHHhhcCC
Q 031810           96 WAYEEMMRFQRESFSAG  112 (152)
Q Consensus        96 ~~~~~~~~~l~~~~~~~  112 (152)
                      .+..+++..|+.++-.+
T Consensus       704 a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGCPD  720 (749)
T ss_pred             cccHHHHHHHHHcCCCc
Confidence            45589999998887653

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.80  E-value=6.8e-09  Score=84.68  Aligned_cols=93  Identities=26%  Similarity=0.287  Sum_probs=74.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccccccc
Q 031810           14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS   93 (152)
Q Consensus        14 g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~   93 (152)
                      -.|+|..||..|+.+.+++|+..|+++..+|+.  |.+||..|+..||..+|+.|+.+.+++. ...|+.+.|+|.+|+ 
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkk--gf~plImaatagh~tvV~~llk~ha~ve-aQsdrtkdt~lSlac-  832 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKK--GFVPLIMAATAGHITVVQDLLKAHADVE-AQSDRTKDTMLSLAC-  832 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccc--cchhhhhhcccCchHHHHHHHhhhhhhh-hhcccccCceEEEec-
Confidence            467888888888888888888888888888877  8889988888888888888888888875 456778888888887 


Q ss_pred             chhhHHHHHHHHHHhhcC
Q 031810           94 LEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~  111 (152)
                       ..+..+++++|+..+..
T Consensus       833 -sggr~~vvelLl~~gan  849 (2131)
T KOG4369|consen  833 -SGGRTRVVELLLNAGAN  849 (2131)
T ss_pred             -CCCcchHHHHHHHhhcc
Confidence             44456777777666544

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.70  E-value=4.5e-08  Score=73.74  Aligned_cols=65  Identities=34%  Similarity=0.467  Sum_probs=56.9

Q ss_pred             CCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHH
Q 031810            1 MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE   70 (152)
Q Consensus         1 ~d~n~~~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   70 (152)
                      +|+|+-.   -..|.||||.|++.|+..-+++|+-+|+|++..|.+  |.||+.+|-..||-++.+-|++
T Consensus       157 A~~N~~h---pekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~--GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  157 AQANFFH---PEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSS--GMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             cccCCCC---cccCCchhHHHHhccchhhhhHHhhccCCCCCCCCC--CCcHHHHHHhcCchHHHHHHHH
Confidence            4566653   456999999999999999999999999999999998  9999999999999888776655

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.70  E-value=3.8e-08  Score=75.34  Aligned_cols=63  Identities=32%  Similarity=0.450  Sum_probs=59.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCC
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL   75 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~   75 (152)
                      +.+|+|+||+||+.|+..+.++|+=+|+|+...|..  |+|+|.||-+.|.-+|+.+|+.+|+..
T Consensus       658 ~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~--g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  658 EGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAH--GRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             CCCCcchhhhhhhhcchhHHHHHHHhCccceecccC--CchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            667899999999999999999999999999999988  999999999999999999999999854

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.66  E-value=4.1e-08  Score=74.36  Aligned_cols=84  Identities=32%  Similarity=0.381  Sum_probs=63.7

Q ss_pred             cHHHHHHHcCCHHHH-HHHH-hcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccccccc
Q 031810           16 TPLHLAAQGGHLEVM-DVLL-ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS   93 (152)
Q Consensus        16 t~L~~a~~~g~~~~~-~~Ll-~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~   93 (152)
                      .|+|++......+-. +.|. +....++..|..  |+||||.|+..|+.+.++.|+.+|+++  ..+|.+|++|||-|++
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~--g~TpLhlAV~Lg~~~~a~~Ll~a~Adv--~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPP--GRTPLHLAVRLGHVEAARILLSAGADV--SIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCC--CCccHHHHHHhcCHHHHHHHHhcCCCc--cccccccccHHHHHHH
Confidence            348888876655443 3333 334456777776  899999999999999999999999988  8999999999999986


Q ss_pred             chhhHHHHHHHH
Q 031810           94 LEWAYEEMMRFQ  105 (152)
Q Consensus        94 ~~~~~~~~~~~l  105 (152)
                      +++  ..++..+
T Consensus        98 ~g~--~q~i~~v  107 (560)
T KOG0522|consen   98 TGN--EQIITEV  107 (560)
T ss_pred             cCC--HHHHHHH
Confidence            554  4444333

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.64  E-value=9.1e-08  Score=72.55  Aligned_cols=61  Identities=34%  Similarity=0.676  Sum_probs=55.1

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN   71 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   71 (152)
                      ..|..|.||||+|+..|+...++.|+..|+++..++..  ||++||-|+..|+.+++..++.+
T Consensus        50 ~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~--gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   50 RRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNE--GWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             cccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccc--cccHHHHHHHcCCHHHHHHHHHH
Confidence            35888999999999999999999999999999999888  99999999999998887666554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.63  E-value=1.8e-07  Score=62.51  Aligned_cols=78  Identities=27%  Similarity=0.236  Sum_probs=65.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERG-ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      +|.+|+|+++.|++.|..+.+.+|+.+| +.+...+..  |..++.+|-..|..++++.|.+.-.+.+.......+.++.
T Consensus         8 rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~s--sldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~~e~lf   85 (223)
T KOG2384|consen    8 RDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDES--SLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSRDEALF   85 (223)
T ss_pred             hhhhcchHHHHHhhhcchhHHHHHhccCcccccccccc--cchHHHHHHhcChHHHHHHHHHHhccCCCcccCCCCCccc
Confidence            4999999999999999999999999999 888888887  9999999999999999999988755543344444555554


Q ss_pred             c
Q 031810           89 H   89 (152)
Q Consensus        89 ~   89 (152)
                      +
T Consensus        86 y   86 (223)
T KOG2384|consen   86 Y   86 (223)
T ss_pred             h
Confidence            3

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.62  E-value=1.5e-08  Score=82.71  Aligned_cols=97  Identities=27%  Similarity=0.341  Sum_probs=70.4

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc-ccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDAR-TKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      ++|+.|.+||.+|+-.|+..+|+.|+...+++... |+.  +.|+|-+||..|+.+++++||..|++-  ..++-...||
T Consensus       785 hrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrt--kdt~lSlacsggr~~vvelLl~~gank--ehrnvsDytP  860 (2131)
T KOG4369|consen  785 HRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRT--KDTMLSLACSGGRTRVVELLLNAGANK--EHRNVSDYTP  860 (2131)
T ss_pred             ccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccc--cCceEEEecCCCcchHHHHHHHhhccc--cccchhhcCc
Confidence            45778888888888888888888888877777644 333  678888888888888888888887754  6667777788


Q ss_pred             ccccccchhhHHHHHHHHHHhhcC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |.+|.  ..++.+++.+|+..+..
T Consensus       861 lsla~--Sggy~~iI~~llS~Gse  882 (2131)
T KOG4369|consen  861 LSLAR--SGGYTKIIHALLSSGSE  882 (2131)
T ss_pred             hhhhc--CcchHHHHHHHhhcccc
Confidence            87776  44556777777666633

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.62  E-value=5.6e-08  Score=74.56  Aligned_cols=90  Identities=26%  Similarity=0.406  Sum_probs=55.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCC--ccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGAD--IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      +.+-.+.||+|+..|+-++|++++++|..  ++..+..  |+|+||-|+..++..+.++|++.|+.+  ...|..|.||-
T Consensus       896 ~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~--get~lhkaa~~~~r~vc~~lvdagasl--~ktd~kg~tp~  971 (1004)
T KOG0782|consen  896 GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADET--GETALHKAACQRNRAVCQLLVDAGASL--RKTDSKGKTPQ  971 (1004)
T ss_pred             CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhh--hhHHHHHHHHhcchHHHHHHHhcchhh--eecccCCCChH
Confidence            44456667777777777777777776632  3445555  677777776666666677777777765  66666777776


Q ss_pred             cccccchhhHHHHHHHHH
Q 031810           89 HYCPSLEWAYEEMMRFQR  106 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~  106 (152)
                      .-|...+  ..++..||.
T Consensus       972 eraqqa~--d~dlaayle  987 (1004)
T KOG0782|consen  972 ERAQQAG--DPDLAAYLE  987 (1004)
T ss_pred             HHHHhcC--CchHHHHHh
Confidence            6654222  234554443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.54  E-value=1e-07  Score=76.83  Aligned_cols=80  Identities=29%  Similarity=0.403  Sum_probs=74.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 031810           12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC   91 (152)
Q Consensus        12 ~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a   91 (152)
                      ..|.|+||.|+..+...++++|++.|+++|..+..  |++|+|.+...|+...+..|+.+|++.  .+.+..|.+|+++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~--g~~plh~~~~~g~~~~~~~ll~~~a~~--~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSK--GRTPLHHATASGHTSIACLLLKRGADP--NAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhcc--CCCcchhhhhhcccchhhhhccccccc--cccCccCcchhhHH
Confidence            34789999999999999999999999999999998  999999999999999999999999987  89999999999999


Q ss_pred             ccch
Q 031810           92 PSLE   95 (152)
Q Consensus        92 ~~~~   95 (152)
                      ....
T Consensus       730 ~~~~  733 (785)
T KOG0521|consen  730 MEAA  733 (785)
T ss_pred             hhhc
Confidence            7543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.37  E-value=8.5e-07  Score=59.37  Aligned_cols=70  Identities=27%  Similarity=0.358  Sum_probs=60.8

Q ss_pred             CCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcC-CCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHhhcCC
Q 031810           37 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG-AFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        37 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-a~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      +.++|..|..  |||+++.|+..|..+.+.+|+.+| +.+  ...+..|.+++.+|-  ..+..+++..|.+.....
T Consensus         2 e~~in~rD~f--gWTalmcaa~eg~~eavsyllgrg~a~v--gv~d~ssldaaqlae--k~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAF--GWTALMCAAMEGSNEAVSYLLGRGVAFV--GVTDESSLDAAQLAE--KGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhh--cchHHHHHhhhcchhHHHHHhccCcccc--cccccccchHHHHHH--hcChHHHHHHHHHHhccC
Confidence            4578888877  999999999999999999999999 777  899999999999997  666688998888876553

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.23  E-value=2e-06  Score=66.27  Aligned_cols=91  Identities=16%  Similarity=0.163  Sum_probs=71.1

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhh
Q 031810           18 LHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWA   97 (152)
Q Consensus        18 L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~   97 (152)
                      +..|+..+++-.++..-..|.++-..+.+  ..+.||+|+..|+-++|++++++|..-..+..+..|.|+||-|++.+  
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~--~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~--  945 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPD--HCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQR--  945 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcc--hhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhc--
Confidence            44566666654455555667788788777  78999999999999999999999986545677889999999998544  


Q ss_pred             HHHHHHHHHHhhcCC
Q 031810           98 YEEMMRFQRESFSAG  112 (152)
Q Consensus        98 ~~~~~~~l~~~~~~~  112 (152)
                      +..+.++|.+.+...
T Consensus       946 ~r~vc~~lvdagasl  960 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGASL  960 (1004)
T ss_pred             chHHHHHHHhcchhh
Confidence            477888888877653

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.21  E-value=9.6e-07  Score=66.49  Aligned_cols=61  Identities=38%  Similarity=0.509  Sum_probs=55.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcC
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLE-RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG   72 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~-~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g   72 (152)
                      +|.+.+|+||.|+..|+.+++++|++ .+.+++.+|++  |+|||.-|...+|.+++++|-+.-
T Consensus       535 ~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw--~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  535 KDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRW--GRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             cccccchhheeecccCceeHHHHHHHHHcCCCChhhcc--CCCcchHhHhcCcHHHHHHHHHHh
Confidence            48889999999999999999999996 46889999988  999999999999999999997764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.07  E-value=1.1e-06  Score=70.22  Aligned_cols=73  Identities=18%  Similarity=0.200  Sum_probs=60.2

Q ss_pred             HHhcCCC-ccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCC-CCCCcccccccchhhHHHHHHHHHHhhc
Q 031810           33 LLERGAD-IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDS-RFNPPLHYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        33 Ll~~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~-~g~tpl~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      +-+.+.+ .|++|+.  |+|+||.++..+..++++||+.+|+++  ..+|. .|.||||-|+  -.++.+++.+|+..+.
T Consensus        37 ~~k~c~n~anikD~~--GR~alH~~~S~~k~~~l~wLlqhGidv--~vqD~ESG~taLHRai--yyG~idca~lLL~~g~  110 (1267)
T KOG0783|consen   37 SEKSCQNLANIKDRY--GRTALHIAVSENKNSFLRWLLQHGIDV--FVQDEESGYTALHRAI--YYGNIDCASLLLSKGR  110 (1267)
T ss_pred             HHHhhhhhhhHHHhh--ccceeeeeeccchhHHHHHHHhcCcee--eeccccccchHhhHhh--hhchHHHHHHHHhcCC
Confidence            3344433 5788887  999999999999999999999999998  66665 7899999998  5566899988888875


Q ss_pred             C
Q 031810          111 A  111 (152)
Q Consensus       111 ~  111 (152)
                      .
T Consensus       111 S  111 (1267)
T KOG0783|consen  111 S  111 (1267)
T ss_pred             c
Confidence            4

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.88  E-value=5.6e-05  Score=57.53  Aligned_cols=64  Identities=19%  Similarity=0.204  Sum_probs=52.2

Q ss_pred             HHHHHHHHhcCCCcccc----ccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 031810           27 LEVMDVLLERGADIDAR----TKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP   92 (152)
Q Consensus        27 ~~~~~~Ll~~~~~~~~~----~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~   92 (152)
                      ...++.|.+.+.+.|..    .....-.|+||+|+..|...+|.+||+.|+|+  ..+|..|+||+.+++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp--~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP--STKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc--hhcccCCCCcccccc
Confidence            56788888888766532    11111469999999999999999999999877  999999999999997

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.70  E-value=3.2e-05  Score=63.19  Aligned_cols=94  Identities=20%  Similarity=0.157  Sum_probs=63.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccccCCCCchHHHHHHhhCcHHHHHHHH-HcCCCCCCCCCCCCCCCcc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLER-GADIDARTKGACGWTPLHTAAKERKKEAVRFLI-ENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~ga~~~~~~~~~~g~tpl   88 (152)
                      .-.|+|.+|+++..+..-+++.+++. |......+.+  |.-.+|+ |..++.+++-+|+ ..|..+  +.+|.+|+|||
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d--~qgV~hf-ca~lg~ewA~ll~~~~~~ai--~i~D~~G~tpL  645 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRD--GQGVIHF-CAALGYEWAFLPISADGVAI--DIRDRNGWTPL  645 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhccc--CCChhhH-hhhcCCceeEEEEeeccccc--ccccCCCCccc
Confidence            45588889999888888888888876 5555566666  5666666 4455555554443 345545  77888888888


Q ss_pred             cccccchhhHHHHHHHHHHhhcC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |+|+  ..+...++..|.+.+..
T Consensus       646 ~wAa--~~G~e~l~a~l~~lga~  666 (975)
T KOG0520|consen  646 HWAA--FRGREKLVASLIELGAD  666 (975)
T ss_pred             chHh--hcCHHHHHHHHHHhccc
Confidence            8887  44446666666654443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.62  E-value=3.1e-05  Score=63.29  Aligned_cols=94  Identities=23%  Similarity=0.268  Sum_probs=66.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHH-hcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCC----CCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLL-ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL----PDDINDSRF   84 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll-~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~----~~~~~~~~g   84 (152)
                      .|..|..-+|+ |..++.+++-+++ -.|..++++|..  ||||||||+..|+..++..|.+.|++.    ++......|
T Consensus       604 ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~--G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g  680 (975)
T KOG0520|consen  604 LDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRN--GWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGG  680 (975)
T ss_pred             hcccCCChhhH-hhhcCCceeEEEEeecccccccccCC--CCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCC
Confidence            45666777777 4445566655555 467889999998  999999999999999999999766643    455566678


Q ss_pred             CCcccccccchhhHHHHHHHHHHh
Q 031810           85 NPPLHYCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        85 ~tpl~~a~~~~~~~~~~~~~l~~~  108 (152)
                      .|+-..|..  ++...+.-+|.+.
T Consensus       681 ~ta~~la~s--~g~~gia~~lse~  702 (975)
T KOG0520|consen  681 KTAADLARA--NGHKGIAGYLSEK  702 (975)
T ss_pred             Cchhhhhhc--ccccchHHHHhhh
Confidence            888887763  3334555555443

>smart00248 ANK ankyrin repeats

Probab=97.59  E-value=0.00017  Score=32.40  Aligned_cols=25  Identities=48%  Similarity=0.793  Sum_probs=13.5

Q ss_pred             CchHHHHHHhhCcHHHHHHHHHcCC
Q 031810           49 GWTPLHTAAKERKKEAVRFLIENGA   73 (152)
Q Consensus        49 g~t~l~~a~~~~~~~~~~~Ll~~ga   73 (152)
                      |.||+|+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3455555555555555555555544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.35  E-value=0.00041  Score=31.05  Aligned_cols=27  Identities=63%  Similarity=1.059  Sum_probs=24.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 031810           13 KGVTPLHLAAQGGHLEVMDVLLERGAD   39 (152)
Q Consensus        13 ~g~t~L~~a~~~g~~~~~~~Ll~~~~~   39 (152)
                      .|.||+|+++..++.++++.|+..+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            378999999999999999999988754

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.15  E-value=0.00043  Score=52.87  Aligned_cols=46  Identities=30%  Similarity=0.372  Sum_probs=41.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHH
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAA   57 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~   57 (152)
                      .+.-..|+||+|+..|..+++..|++.|+|+..+|..  |.||..++.
T Consensus       426 ~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~--Grtpy~ls~  471 (591)
T KOG2505|consen  426 NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGA--GRTPYSLSA  471 (591)
T ss_pred             cccccchHHHHHHhcchHHHHHHHHHhcCCchhcccC--CCCcccccc
Confidence            3555679999999999999999999999999999998  999999876

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.90  E-value=0.0012  Score=49.10  Aligned_cols=58  Identities=21%  Similarity=0.302  Sum_probs=50.1

Q ss_pred             chHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           50 WTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        50 ~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      .--|..||..|..+.++.|++.|.++  +..|+....||.+|...++  +.++++|++.+.-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV--N~vD~fD~spL~lAsLcGH--e~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV--NAVDRFDSSPLYLASLCGH--EDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc--chhhcccccHHHHHHHcCc--HHHHHHHHHcCCc
Confidence            35678899999999999999999988  9999999999999974444  7899999988765

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=96.86  E-value=0.0014  Score=53.71  Aligned_cols=70  Identities=23%  Similarity=0.215  Sum_probs=51.8

Q ss_pred             cCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHhh
Q 031810           36 RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        36 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~  109 (152)
                      .++++|..+..-.|.|+||.|+..+..-.+++|++.|+++  +..+..|+||+|.+...++  ...+.++.+.+
T Consensus       643 ~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~v--n~~d~~g~~plh~~~~~g~--~~~~~~ll~~~  712 (785)
T KOG0521|consen  643 HGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADV--NALDSKGRTPLHHATASGH--TSIACLLLKRG  712 (785)
T ss_pred             chhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcc--hhhhccCCCcchhhhhhcc--cchhhhhcccc
Confidence            3444443222222789999999999999999999999998  9999999999999985444  34444444433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.82  E-value=0.001  Score=53.74  Aligned_cols=83  Identities=19%  Similarity=0.221  Sum_probs=65.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCC----CccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 031810           17 PLHLAAQGGHLEVMDVLLERGA----DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP   92 (152)
Q Consensus        17 ~L~~a~~~g~~~~~~~Ll~~~~----~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~   92 (152)
                      -...|+..|+...|+..++...    ++|+.|.-  |+++|+.|..+.+.++.++|++++..+         ..+|.+|+
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~l--Gr~al~iai~nenle~~eLLl~~~~~~---------gdALL~aI   96 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPL--GRLALHIAIDNENLELQELLLDTSSEE---------GDALLLAI   96 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChH--hhhceecccccccHHHHHHHhcCcccc---------chHHHHHH
Confidence            4567899999999998886543    45666665  999999999999999999999997632         24788887


Q ss_pred             cchhhHHHHHHHHHHhhcCC
Q 031810           93 SLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        93 ~~~~~~~~~~~~l~~~~~~~  112 (152)
                        ..+...+++++.......
T Consensus        97 --~~~~v~~VE~ll~~~~~~  114 (822)
T KOG3609|consen   97 --AVGSVPLVELLLVHFVDA  114 (822)
T ss_pred             --HHHHHHHHHHHHhccccc
Confidence              555678999998887653

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.39  E-value=0.0076  Score=48.98  Aligned_cols=52  Identities=23%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN   71 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   71 (152)
                      |.-|+++|+.|...-+.++.++|++++..+         .-+|-+|+..|..++++.++.+
T Consensus        59 d~lGr~al~iai~nenle~~eLLl~~~~~~---------gdALL~aI~~~~v~~VE~ll~~  110 (822)
T KOG3609|consen   59 DPLGRLALHIAIDNENLELQELLLDTSSEE---------GDALLLAIAVGSVPLVELLLVH  110 (822)
T ss_pred             ChHhhhceecccccccHHHHHHHhcCcccc---------chHHHHHHHHHHHHHHHHHHhc
Confidence            666777777777777777777777664222         1344444555555555555443

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.82  E-value=0.42  Score=27.44  Aligned_cols=48  Identities=29%  Similarity=0.438  Sum_probs=38.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHc
Q 031810           15 VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN   71 (152)
Q Consensus        15 ~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   71 (152)
                      ..-+..|..+|+.++++.+++.+ .+        ...++..|+...+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~--------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KP--------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-cc--------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            34578899999999999888654 12        24678999999999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=89.26  E-value=1.2  Score=31.35  Aligned_cols=26  Identities=15%  Similarity=0.098  Sum_probs=12.3

Q ss_pred             CCCCcccccccchhhHHHHHHHHHHhhc
Q 031810           83 RFNPPLHYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        83 ~g~tpl~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      .|.|-|.-|.  ..++.+++.+|++.+.
T Consensus       253 SGdtMLDNA~--Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  253 SGDTMLDNAM--KYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CcchHHHhHH--hcCcHHHHHHHHHcCc
Confidence            4455555554  2223455555555443

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	152
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-12
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-12
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-12
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-12
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-11
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-11
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-10
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-10
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		7e-10
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-09
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-09
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-09
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-09
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		9e-09
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		1e-08
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-08
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-08
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-08
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-08
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		5e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-07
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-07
1uoh_A	226	Human Gankyrin Length = 226		1e-06
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-06
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-06
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		5e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		8e-06
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		3e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		4e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		6e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		6e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		7e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		8e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		1e-04
2nyj_A	273	Crystal Structure Of The Ankyrin Repeat Domain Of T		2e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		2e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		2e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		4e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		4e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-04

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 60/105 (57%), Gaps = 14/105 (13%)
Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN A     + G TPLHLAA  GHLE+++VLL+ GAD+DA      G+TPLH AA    
Sbjct: 39  DVNAA----DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD--VFGYTPLHLAAYWGH 92
Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRF 104
            E V  L++NGA    D+N  DS    PLH     +W Y E++  
Sbjct: 93  LEIVEVLLKNGA----DVNAMDSDGMTPLHLAA--KWGYLEIVEV 131

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 14/105 (13%)
Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN +     S G TPLH AA+ GH E++ +L+ +GAD++A  K + G TPLH AAKE  
Sbjct: 29  DVNAS----DSDGRTPLHYAAKEGHKEIVKLLISKGADVNA--KDSDGRTPLHYAAKEGH 82
Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRF 104
           KE V+ LI  GA    D+N  DS    PLHY    +  ++E+++ 
Sbjct: 83  KEIVKLLISKGA----DVNAKDSDGRTPLHYAA--KEGHKEIVKL 121

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 14/105 (13%)
Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN +     S G TPLH AA+ GH EV+ +L+ +GAD++A  K + G TPLH AA+   
Sbjct: 29  DVNAS----DSDGRTPLHHAAENGHKEVVKLLISKGADVNA--KDSDGRTPLHHAAENGH 82
Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRF 104
           KE V+ LI  GA    D+N  DS    PLH+    E  ++E+++ 
Sbjct: 83  KEVVKLLISKGA----DVNAKDSDGRTPLHHAA--ENGHKEVVKL 121

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
          G TPLHLAA+ GHLEV+ +LLE GAD++A+ K   G TPLH AA+    E V+ L+E GA
Sbjct: 2  GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 74 FLPDDIN--DSRFNPPLHYC 91
              D+N  D     PLH  
Sbjct: 60 ----DVNAKDKNGRTPLHLA 75

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
          G TPLHLAA+ GHLEV+ +LLE GAD++A+ K   G TPLH AA+    E V+ L+E GA
Sbjct: 2  GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 74 FLPDDIN--DSRFNPPLHYC 91
              D+N  D     PLH  
Sbjct: 60 ----DVNAKDKNGRTPLHLA 75

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 6/72 (8%)
Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN +     S G+TPLHLAA  GHLE+++VLL+ GAD++A  +   GWTPLH AA   +
Sbjct: 64  DVNAS----DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDR--AGWTPLHLAALSGQ 117
Query: 62  KEAVRFLIENGA 73
            E V  L+++GA
Sbjct: 118 LEIVEVLLKHGA 129

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 4   NVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 62
           N A    K K G TPLHLAA+ GHLE+++VLL+ GAD++A+ K   G+TPLH AA+E   
Sbjct: 36  NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK--DGYTPLHLAAREGHL 93
Query: 63  EAVRFLIENGAFLPDDIN--DSRFNPPLHYC 91
           E V  L++ GA    D+N  D     PLH  
Sbjct: 94  EIVEVLLKAGA----DVNAKDKDGYTPLHLA 120

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 4   NVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 62
           N A    K K G TPLHLAA+ GHLE+++VLL+ GAD++A+ K   G+TPLH AA+E   
Sbjct: 24  NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK--DGYTPLHLAAREGHL 81
Query: 63  EAVRFLIENGAFLPDDIN--DSRFNPPLHYC 91
           E V  L++ GA    D+N  D     PLH  
Sbjct: 82  EIVEVLLKAGA----DVNAKDKDGYTPLHLA 108

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 4   NVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 62
           N A    K K G TPLHLAA+ GHLE+++VLL+ GAD++A+ K   G+TPLH AA+E   
Sbjct: 24  NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK--DGYTPLHLAAREGHL 81
Query: 63  EAVRFLIENGAFLPDDIN--DSRFNPPLHYC 91
           E V  L++ GA    D+N  D     PLH  
Sbjct: 82  EIVEVLLKAGA----DVNAKDKDGYTPLHLA 108

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           S GVTPLHLAA+ GHLE+++VLL+ GAD++A    + G+TPLH AAK    E V  L++N
Sbjct: 78  SLGVTPLHLAARRGHLEIVEVLLKNGADVNASD--SHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 72  GA 73
           GA
Sbjct: 136 GA 137

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 10/103 (9%)
Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN +     S G TPLHLAA+ GH EV+ +LL +GAD +A  K + G TPLH AA+   
Sbjct: 29  DVNAS----DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA--KDSDGKTPLHLAAENGH 82
Query: 62  KEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
           KE V+ L+  GA    +  DS    PLH     E  ++E+++ 
Sbjct: 83  KEVVKLLLSQGA--DPNAKDSDGKTPLHLAA--ENGHKEVVKL 121

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 12/90 (13%)
Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN   W     G+TPLHL    GHLE+++VLL+  AD++A  K   GWTPLH AA    
Sbjct: 39  DVNANDW----FGITPLHLVVNNGHLEIIEVLLKYAADVNASDK--SGWTPLHLAAYRGH 92
Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLH 89
            E V  L++ GA    D+N  D +   PLH
Sbjct: 93  LEIVEVLLKYGA----DVNAMDYQGYTPLH 118

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           S G TPLH AA+ GH E++ +LL +GAD +A  K + G TPLH AA+   KE V+ L+  
Sbjct: 35  SDGRTPLHYAAENGHKEIVKLLLSKGADPNA--KDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 72  GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
           GA    +  DS    PLHY    E  ++E+++ 
Sbjct: 93  GA--DPNAKDSDGRTPLHYA--AENGHKEIVKL 121

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           + G+TPLHLAA  GHLE+++VLL+ GAD+DA      G+TPLH AA     E V  L++ 
Sbjct: 45  NTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD--VYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 72  GAFLPDDIN--DSRFNPPLH 89
           GA    D+N  D   + PLH
Sbjct: 103 GA----DVNAFDMTGSTPLH 118

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPLHLAA  GHLE+++VLL+ GAD++A    + G TPLH AA     E V  L++NGA
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGADVNADD--SLGVTPLHLAADRGHLEVVEVLLKNGA 104
Query: 74  FLPDDINDSRFNPPLHYCPSL 94
            +  + ND     PLH   ++
Sbjct: 105 DV--NANDHNGFTPLHLAANI 123

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 8/82 (9%)
Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           + G TPLHLAA  GHLE+++VLL+ GAD++A      G TPLH AA     E V  L+++
Sbjct: 45  NDGYTPLHLAASNGHLEIVEVLLKNGADVNASD--LTGITPLHLAAATGHLEIVEVLLKH 102
Query: 72  GAFLPDDIN--DSRFNPPLHYC 91
           GA    D+N  D+  + PLH  
Sbjct: 103 GA----DVNAYDNDGHTPLHLA 120

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 49/80 (61%), Gaps = 8/80 (10%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPLHLAA  GHLE+++VLL+ GAD++A  K   G TPLH AA     E V  L++NGA
Sbjct: 47  GKTPLHLAAIKGHLEIVEVLLKHGADVNAADK--MGDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 74  FLPDDIN--DSRFNPPLHYC 91
               D+N  D+    PLH  
Sbjct: 105 ----DVNATDTYGFTPLHLA 120

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPLHLAA+ GHLE+++VLL+ GAD++A      G TPLH AAK    E V  L++ GA
Sbjct: 47  GDTPLHLAARVGHLEIVEVLLKNGADVNALD--FSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 74  FLPDDIN--DSRFNPPLHYC 91
               D+N  D+  + PLH  
Sbjct: 105 ----DVNADDTIGSTPLHLA 120

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN   W     G TPLHLAA+ GHLE+++VLL+ GAD++A      G TPLH AA    
Sbjct: 39  DVNATDW----LGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN--YGATPLHLAADNGH 92
Query: 62  KEAVRFLIENGAFLPDDINDSRFN--PPLHYC 91
            E V  L+++GA    D+N   +    PLH  
Sbjct: 93  LEIVEVLLKHGA----DVNAKDYEGFTPLHLA 120

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           GVTPLHLAA+ GHLE+++VLL+ GAD++AR     G TPLH AA     E V  L+E GA
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADVNARD--IWGRTPLHLAATVGHLEIVEVLLEYGA 104

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
            +G TPLHLAA  GH E+++VLL+ GAD++AR     GWTPLH AA     E V  L++ 
Sbjct: 45  DQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD--TDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 72  GAFLPDDIN--DSRFNPPLHYC 91
           GA    D+N  D+    PLH  
Sbjct: 103 GA----DVNAQDAYGLTPLHLA 120

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 8   WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 67
           WG K  G TPLH AA+ GH E +  LL +GAD++AR+K   G TPLH AAK    E V+ 
Sbjct: 4   WGSKD-GNTPLHNAAKNGHAEEVKKLLSKGADVNARSK--DGNTPLHLAAKNGHAEIVKL 60
Query: 68  LIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
           L+  GA +     D   N P H     +  + E+++ 
Sbjct: 61  LLAKGADVNARSKDG--NTPEHLAK--KNGHHEIVKL 93

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G+TPLHLAAQ GHLE+++VLL+ GAD++A      G TPLH AA     E V  L+++GA
Sbjct: 47  GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDN--FGITPLHLAAIRGHLEIVEVLLKHGA 104

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           GVTPLHLAA+ GHLE+++VLL+ GAD++A    + G TPLH AA     E V  L+E GA
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADVNASD--SWGRTPLHLAATVGHLEIVEVLLEYGA 104

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           + G+TPLHLAA  GHLE+++VLL+ GAD++A      G TPLH AA     E V  L+++
Sbjct: 45  ASGLTPLHLAATYGHLEIVEVLLKHGADVNAID--IMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 72  GAFLPDDIN--DSRFNPPLHYC 91
           GA    D+N  D+  + PLH  
Sbjct: 103 GA----DVNAVDTWGDTPLHLA 120

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           + G+TPLHLAA  GHLE+++VLL+ GAD++A      G TPLH AA     E V  L+++
Sbjct: 45  ASGLTPLHLAATYGHLEIVEVLLKHGADVNAID--IXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 72  GAFLPDDIN--DSRFNPPLHYC 91
           GA    D+N  D+  + PLH  
Sbjct: 103 GA----DVNAVDTWGDTPLHLA 120

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPLHLAA  GHLE+++VLL+ GAD++A      G TPLH AA     E V  L++NGA
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNGADVNAYD--TLGSTPLHLAAHFGHLEIVEVLLKNGA 104
Query: 74  FLPDDIN--DSRFNPPLHYCPS 93
               D+N  D     PLH   +
Sbjct: 105 ----DVNAKDDNGITPLHLAAN 122

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           GVTPLHLAA+ GHLE+++VLL+ GAD++A      G TPLH AA     E V  L+E GA
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADVNASD--IWGRTPLHLAATVGHLEIVEVLLEYGA 104

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 7/73 (9%)
Query: 8   WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 67
            G KS G+TPLHL AQ GH+ V DVL++ G  +DA T+   G+TPLH A+     + V+F
Sbjct: 273 LGNKS-GLTPLHLVAQEGHVPVADVLIKHGVMVDATTR--MGYTPLHVASHYGNIKLVKF 329
Query: 68  LIENGAFLPDDIN 80
           L+++ A    D+N
Sbjct: 330 LLQHQA----DVN 338

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           + G TPLHLAA  GHLE+++VLL+ GAD++A      G TPL  AA     E V  L++N
Sbjct: 45  ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH--AGMTPLRLAALFGHLEIVEVLLKN 102
Query: 72  GAFLPDDINDSRFNPPLHYC 91
           GA +  + ND   + PLH  
Sbjct: 103 GADV--NANDMEGHTPLHLA 120

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           + G TPLHLAA  GHLE+++VLL+ GAD++A  K A G TPL+ AA     E V  L+++
Sbjct: 66  TNGTTPLHLAASLGHLEIVEVLLKYGADVNA--KDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 72  GA 73
           GA
Sbjct: 124 GA 125

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPLHLAA  GHLE+++VLL+ GAD++A   G  G TPLH AA     E V  L+++GA
Sbjct: 47  GHTPLHLAAMLGHLEIVEVLLKNGADVNA--TGNTGRTPLHLAAWADHLEIVEVLLKHGA 104

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 10  PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
           P  +G+T LH A   GH E++  L++ G +++A      GWTPLH AA     +  +FL+
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD--GWTPLHCAASCNNVQVCKFLV 123
Query: 70  ENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
           E+GA +   +  S        C  +E  Y +  +F
Sbjct: 124 ESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF 157

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G+TPLHLAA   HLE+++VLL+ GAD++A    A G TPLH  A     E V  L+++GA
Sbjct: 47  GLTPLHLAAMNDHLEIVEVLLKNGADVNAID--AIGETPLHLVAMYGHLEIVEVLLKHGA 104

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 10  PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
           P  +G+T LH A   GH E++  L++ G +++A      GWTPLH AA     +  +FL+
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD--GWTPLHCAASCNNVQVCKFLV 123
Query: 70  ENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
           E+GA +   +  S        C  +E  Y +  +F
Sbjct: 124 ESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF 157

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G +PLHLAAQ GH    +VLL  G   DARTK     TPLH AA E     V  L+++GA
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK--VDRTPLHMAASEGHANIVEVLLKHGA 91
Query: 74  FLPDDINDSRFNPPLHYCPSLEWAYE 99
               D+N       +    +L WA E
Sbjct: 92  ----DVN----AKDMLKMTALHWATE 109

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G+TPL+LA   GHLE+++VLL+ GAD++A    A G+TPLH AA     E    L+++GA
Sbjct: 47  GLTPLYLATAHGHLEIVEVLLKNGADVNAVD--AIGFTPLHLAAFIGHLEIAEVLLKHGA 104

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           KG TPLHLAA   HLE+++VLL+ GAD++A      G TPLH AA     E V  L+++G
Sbjct: 46  KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND--GSTPLHLAALFGHLEIVEVLLKHG 103
Query: 73  A 73
           A
Sbjct: 104 A 104

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           G T LH+AA  G+ EV+ +L++  A  D   K   GWTPLH AA   K+EA R L+EN
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQ--ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 10  PK-SKGVTPLHLAAQGGHLEVMDVLLERGA-DIDARTKGACGWTPLHTAAKERKKEAVRF 67
           PK ++G T LHLAA+ GH EV+  LL  G  D++ +  G  GWTP+  A + +  + V+ 
Sbjct: 72  PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG--GWTPMIWATEYKHVDLVKL 129
Query: 68  LIENGAFLPDDINDSRFNPPLHY 90
           L+  G+ +  +I D+  N  LH+
Sbjct: 130 LLSKGSDI--NIRDNEENICLHW 150

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G +PLH+AA  G  E++  LL +GA ++A  +  C  TPLH AA + + E    L+E GA
Sbjct: 73  GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC--TPLHYAASKNRHEIAVMLLEGGA 130
Query: 74  FLPD 77
             PD
Sbjct: 131 N-PD 133

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G +PLH+AA  G  E++  LL +GA ++A  +  C  TPLH AA + + E    L+E GA
Sbjct: 74  GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC--TPLHYAASKNRHEIAVMLLEGGA 131
Query: 74  FLPD 77
             PD
Sbjct: 132 N-PD 134

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 16  TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
           T LH A   GH E+++ LL+ G  ++   K   GW+PLH AA   + E V+ L+  GA +
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASAGRDEIVKALLVKGAHV 99
Query: 76  PDDINDSRFNPPLHYCPS 93
            + +N +    PLHY  S
Sbjct: 100 -NAVNQNGCT-PLHYAAS 115

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 3   VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 62
           +NV       +  TPLHLAA    + ++ +LL+ GAD+ A+ KG  G  PLH A      
Sbjct: 47  LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG--GLVPLHNACSYGHY 104
Query: 63  EAVRFLIENGAFL 75
           E    L+++GA +
Sbjct: 105 EVTELLLKHGACV 117

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 10  PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
           P   G TP H+A   G+LEV+  L +R    D       G T LH A  ++  E  +FLI
Sbjct: 68  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 70  ENGAFLPDDINDSRFNPPLHYCPSL 94
           ENGA +   I D     PLH   S+
Sbjct: 128 ENGASV--RIKDKFNQIPLHRAASV 150

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 10  PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
           P   G TP H+A   G+LEV+  L +R    D       G T LH A  ++  E  +FLI
Sbjct: 68  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 70  ENGAFLPDDINDSRFNPPLHYCPSL 94
           ENGA +   I D     PLH   S+
Sbjct: 128 ENGASV--RIKDKFNQIPLHRAASV 150

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 10  PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
           P   G TP H+A   G+LEV+  L +R    D       G T LH A  ++  E  +FLI
Sbjct: 68  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 70  ENGAFLPDDINDSRFNPPLHYCPSL 94
           ENGA +   I D     PLH   S+
Sbjct: 128 ENGASV--RIKDKFNQIPLHRAASV 150

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G +PLH+AA  G  E++  LL +GA ++A  +  C  TPLH AA + + E    L+E GA
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC--TPLHYAASKNRHEIAVMLLEGGA 130

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 6   AAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAV 65
           A+  P+S   +P+H AA+ GH+E ++ L+  G +ID +       TPL+ A + +++  V
Sbjct: 93  ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL--GTPLYLACENQQRACV 150
Query: 66  RFLIENGAFLPDDINDSRF-NPPLH 89
           + L+E+GA    D+N  +  + PLH
Sbjct: 151 KKLLESGA----DVNQGKGQDSPLH 171

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 4  NVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
          N A    K K G TPLHLAA+ GHLEV+ +LLE GAD++A+ K
Sbjct: 28 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 4  NVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
          N A    K K G TPLHLAA+ GHLE+++VLL+ GAD++A+ K
Sbjct: 24 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 66

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 6   AAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAV 65
           A+  P+S   +P+H AA+ GH+E ++ L+  G +ID +       TPL+ A + +++  V
Sbjct: 149 ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL--GTPLYLACENQQRACV 206
Query: 66  RFLIENGAFLPDDINDSRF-NPPLH 89
           + L+E+GA    D+N  +  + PLH
Sbjct: 207 KKLLESGA----DVNQGKGQDSPLH 227

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G+ PLH A   GH EV ++L++ GA ++        +TPLH AA + K E  + L+++GA
Sbjct: 75  GLVPLHNACSYGHYEVAELLVKHGAVVNVAD--LWKFTPLHEAAAKGKYEICKLLLQHGA 132
Query: 74  FLPDDINDSR-FNPPLHYCPSLEWAYEEMMR 103
              D    +R  N PL      +   ++++R
Sbjct: 133 ---DPTKKNRDGNTPLDLVKDGDTDIQDLLR 160

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW--TPLHTAAKERKKEAVRFLIEN 71
           G+ PLH A   GH EV ++L++ GA ++     A  W  TPLH AA + K E  + L+++
Sbjct: 79  GLVPLHNACSYGHYEVAELLVKHGAVVNV----ADLWKFTPLHEAAAKGKYEICKLLLQH 134
Query: 72  GAFLPDDINDSR-FNPPLHYCPSLEWAYEEMMR 103
           GA   D    +R  N PL      +   ++++R
Sbjct: 135 GA---DPTKKNRDGNTPLDLVKDGDTDIQDLLR 164

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW--TPLHTAAKERKKEAVRFLIEN 71
           G+ PLH A   GH EV ++L++ GA ++     A  W  TPLH AA + K E  + L+++
Sbjct: 77  GLVPLHNACSYGHYEVAELLVKHGAVVNV----ADLWKFTPLHEAAAKGKYEICKLLLQH 132
Query: 72  GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMR 103
           GA       D   N PL      +   ++++R
Sbjct: 133 GADPTKKNRDG--NTPLDLVKDGDTDIQDLLR 162

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 4  NVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
          N A    K K G TPLHLAA+ GHLEV+ +LLE GAD+ A+ K
Sbjct: 46 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 10  PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
           P  +G+T LH A  G +  ++D L+  GA+++  +  + GWTPLH AA          L+
Sbjct: 50  PNEEGITALHNAICGANYSIVDFLITAGANVN--SPDSHGWTPLHCAASCNDTVICMALV 107
Query: 70  ENGAFL 75
           ++GA +
Sbjct: 108 QHGAAI 113

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G +PLH A + G   V+++L+ RGA I+   +G    TPLH AA    ++ V+ L++  A
Sbjct: 34  GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAASHGHRDIVQKLLQYKA 91
Query: 74  FLPDDIN--DSRFNPPLHY 90
               DIN  +   N PLHY
Sbjct: 92  ----DINAVNEHGNVPLHY 106

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G +PLH A + G   V+++L+ RGA I+   +G    TPLH AA    ++ V+ L++  A
Sbjct: 39  GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAASHGHRDIVQKLLQYKA 96
Query: 74  FLPDDIN--DSRFNPPLHY 90
               DIN  +   N PLHY
Sbjct: 97  ----DINAVNEHGNVPLHY 111

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2  DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
          DVN    G    G  PLH AA  G LE+++ LL +GADI+A  K     TPL +A  E  
Sbjct: 27 DVNRTLEG----GRKPLHYAADCGQLEILEFLLLKGADINAPDKHH--ITPLLSAVYEGH 80
Query: 62 KEAVRFLIENGA 73
             V+ L+  GA
Sbjct: 81 VSCVKLLLSKGA 92

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2  DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
          DVN    G    G  PLH AA  G LE+++ LL +GADI+A  K     TPL +A  E  
Sbjct: 32 DVNRTLEG----GRKPLHYAADCGQLEILEFLLLKGADINAPDKHH--ITPLLSAVYEGH 85
Query: 62 KEAVRFLIENGA 73
             V+ L+  GA
Sbjct: 86 VSCVKLLLSKGA 97

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
          +G T LH+A+  G +  ++ LL+ G+D     K   GWTPLH A      + V  L+++ 
Sbjct: 9  RGETLLHIASIKGDIPSVEYLLQNGSD--PNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 73 AFLPDDINDSRFNPPLH 89
          A +  +    + + PLH
Sbjct: 67 ALV--NTTGYQNDSPLH 81

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
           + G +P+H AA+ G L+ + VL+E GAD++A    + G  P+H A +E     V FL
Sbjct: 74  ASGTSPVHDAARTGFLDTLKVLVEHGADVNALD--STGSLPIHLAIREGHSSVVSFL 128

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
           + G +P+H AA+ G L+ + VL+E GAD++A    + G  P+H A +E     V FL
Sbjct: 72  ASGTSPVHDAARTGFLDTLKVLVEHGADVNALD--STGSLPIHLAIREGHSSVVSFL 126

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC-----------GWTPLHTAAKERK 61
           +G T LH+A    ++ ++  LL RGA + AR  G+            G  PL  AA    
Sbjct: 74  EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 62  KEAVRFLIENGAFLPDDI--NDSRFNPPLH 89
           +E VR LIE+GA    DI   DS  N  LH
Sbjct: 134 EEIVRLLIEHGA----DIRAQDSLGNTVLH 159

>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1 Length = 273

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 15/101 (14%)
Query: 3   VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDA--------RTKGACGW---- 50
           VN +      KG T LH+A +  +  ++ +L+E GAD+ A        +TKG  G+    
Sbjct: 90  VNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE 149
Query: 51  TPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 89
            PL  AA   +   V+FL++N ++ P DI+  DS  N  LH
Sbjct: 150 LPLSLAACTNQLAIVKFLLQN-SWQPADISARDSVGNTVLH 189

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPLHLA +     V+++LL+ GAD  AR  G  G TPL +A         R L  +GA
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYG--GRTPLGSALLRPNPILARLLRAHGA 249
Query: 74  FLPDDIND 81
             P+D  D
Sbjct: 250 PEPEDGGD 257

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPLHLA +     V+++LL+ GAD  AR  G  G TPL +A         R L  +GA
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYG--GRTPLGSALLRPNPILARLLRAHGA 249
Query: 74  FLPDDIND 81
             P+D  D
Sbjct: 250 PEPEDGGD 257

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
           + G +P+H AA+ G L+ + VL+E GAD++       G  P+H A +E     V FL
Sbjct: 72  TSGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDGTGALPIHLAVQEGHTAVVSFL 126

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
           + G +P+H AA+ G L+ + VL+E GAD++       G  P+H A +E     V FL
Sbjct: 66  TSGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDGTGALPIHLAVQEGHTAVVSFL 120

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           +D+N+  W     G TPL  A +G H++ ++ LL RGAD+   T+   G+TP+  A    
Sbjct: 93  VDINIYDW----NGGTPLLYAVRGNHVKCVEALLARGADL--TTEADSGYTPMDLAVALG 146
Query: 61  KKEAVRFLIEN 71
            ++ V+ +IEN
Sbjct: 147 YRK-VQQVIEN 156

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 11  KSKGVTPLHLAAQGGHLEVMDVLL-ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
           K KG T LH AAQ  +  ++  L+ E+G++ D + +   G TP+  AA+E + E V +LI
Sbjct: 276 KYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDED--GKTPIXLAAQEGRIEVVXYLI 333
Query: 70  ENGAFL 75
           + GA +
Sbjct: 334 QQGASV 339

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G+T LH+A      E + +LLERGADIDA      G +PL  A +      V+ L+++GA
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDA-VDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           +D+N+  W     G TPL  A  G H++ ++ LL RGAD+   T+   G+TP+  A    
Sbjct: 93  VDINIYDW----NGGTPLLYAVHGNHVKCVEALLARGADL--TTEADSGYTPMDLAVALG 146
Query: 61  KKEAVRFLIEN 71
            ++ V+ +IEN
Sbjct: 147 YRK-VQQVIEN 156

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 1   MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           +D N         G TPL  A  GGH E++ +LL+ GA I+A      G T LH A  E+
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK--GNTALHEAVIEK 196
Query: 61  KKEAVRFLIENGA 73
               V  L+ +GA
Sbjct: 197 HVFVVELLLLHGA 209

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	152
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-25
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-23
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-23
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-23
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-24
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-24
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-24
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-24
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-24
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-23
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-21
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-21
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-22
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-22
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-08
2rfa_A	232	Transient receptor potential cation channel subfa	2e-22
2rfa_A	232	Transient receptor potential cation channel subfa	2e-19
2rfa_A	232	Transient receptor potential cation channel subfa	3e-19
2rfa_A	232	Transient receptor potential cation channel subfa	5e-19
2rfa_A	232	Transient receptor potential cation channel subfa	4e-17
2rfa_A	232	Transient receptor potential cation channel subfa	1e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-22
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-13
2pnn_A	273	Transient receptor potential cation channel subfa	3e-22
2pnn_A	273	Transient receptor potential cation channel subfa	4e-15
2pnn_A	273	Transient receptor potential cation channel subfa	7e-13
2pnn_A	273	Transient receptor potential cation channel subfa	1e-12
2pnn_A	273	Transient receptor potential cation channel subfa	2e-12
2pnn_A	273	Transient receptor potential cation channel subfa	4e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-20
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-21
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-21
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-12
2etb_A	256	Transient receptor potential cation channel subfam	4e-20
2etb_A	256	Transient receptor potential cation channel subfam	2e-17
2etb_A	256	Transient receptor potential cation channel subfam	8e-14
2etb_A	256	Transient receptor potential cation channel subfam	2e-12
2etb_A	256	Transient receptor potential cation channel subfam	1e-07
2etb_A	256	Transient receptor potential cation channel subfam	1e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-09

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 94.0 bits (235), Expect = 4e-26
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 12/91 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN  +      G TPLHLAA+ GH E++ +LL +GAD++AR+K   G TP H A K   
Sbjct: 34  DVNARS----KDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD--GNTPEHLAKKNGH 87

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            E V+ L   GA    D+N      +   H+
Sbjct: 88  HEIVKLLDAKGA----DVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 90.1 bits (225), Expect = 2e-24
 Identities = 36/79 (45%), Positives = 45/79 (56%), Gaps = 8/79 (10%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
          G TPLH AA+ GH E +  LL +GAD++AR+K   G TPLH AAK    E V+ L+  GA
Sbjct: 9  GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLLAKGA 66

Query: 74 FLPDDIN--DSRFNPPLHY 90
              D+N      N P H 
Sbjct: 67 ----DVNARSKDGNTPEHL 81

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 96.0 bits (240), Expect = 2e-25
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
             TPLHLA       V+ +L+  GA   A  +   G T  H A + R    +R L+++ A
Sbjct: 46  RQTPLHLAVITTLPSVVRLLVTAGASPMALDR--HGQTAAHLACEHRSPTCLRALLDSAA 103

Query: 74  FLPDDIN--DSRFNPPLHY 90
               D+   +      LH 
Sbjct: 104 PGTLDLEARNYDGLTALHV 122

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 91.0 bits (227), Expect = 2e-23
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G +PL  A +   L ++ +LL+ GA+++A+     G + LH+A+       VR L+ +GA
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMY--SGSSALHSASGRGLLPLVRTLVRSGA 207

Query: 74  FLPDDIN--DSRFNPPLHY 90
               D +  +   + PL  
Sbjct: 208 ----DSSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 86.0 bits (214), Expect = 1e-21
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G+T LH+A      E + +LLERGADIDA      G +PL  A +      V+ L+++GA
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIK-SGRSPLIHAVENNSLSMVQLLLQHGA 174

Query: 74  FLPDDIN--DSRFNPPLHY 90
               ++N      +  LH 
Sbjct: 175 ----NVNAQMYSGSSALHS 189

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 83.3 bits (207), Expect = 1e-20
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLER----GADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
          G TPLH+A   G+L  +  L+      G ++D         TPLH A        VR L+
Sbjct: 9  GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL--RQTPLHLAVITTLPSVVRLLV 66

Query: 70 ENGAFLPDDIN--DSRFNPPLHY 90
            GA         D       H 
Sbjct: 67 TAGA----SPMALDRHGQTAAHL 85

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 82.9 bits (206), Expect = 2e-20
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G + LH A+  G L ++  L+  GAD   +       TPL  A   R  + +R      A
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSSLKNC--HNDTPLMVARSRRVIDILRGKATRPA 240

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 94.0 bits (235), Expect = 3e-25
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 12/91 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           D+N         G +PLH A + G   V+++L+ RGA I+   +G    TPLH AA    
Sbjct: 31  DLNQGD----DHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG--DDTPLHLAASHGH 84

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
           ++ V+ L++  A    DIN  +   N PLHY
Sbjct: 85  RDIVQKLLQYKA----DINAVNEHGNVPLHY 111

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 84.8 bits (211), Expect = 9e-22
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G  PLH A   G  +V + L+  GA +    K   G  P+  A    ++       + G 
Sbjct: 105 GNVPLHYACFWGQDQVAEDLVANGALVSICNK--YGEMPVDKAKAPLRELLRERAEKMGQ 162

Query: 74  FLPDDIN 80
               ++N
Sbjct: 163 ----NLN 165

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 82.5 bits (205), Expect = 8e-21
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGA-DIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           +  +    + G+   + + L+    D++       G++PLH A +E +   V  LI  G
Sbjct: 5  FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDH--GFSPLHWACREGRSAVVEMLIMRG 62

Query: 73 AFLPDDIN--DSRFNPPLHY 90
          A     IN  +   + PLH 
Sbjct: 63 A----RINVMNRGDDTPLHL 78

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 50.9 bits (123), Expect = 8e-09
 Identities = 6/58 (10%), Positives = 16/58 (27%), Gaps = 12/58 (20%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKE 59
            V++        G  P+  A       + +   + G +++          P      +
Sbjct: 130 LVSICN----KYGEMPVDKAKAPLRELLRERAEKMGQNLNR--------IPYKDTFWK 175

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 95.0 bits (237), Expect = 4e-25
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           +G+T LH A  G +  ++D L+  GA++++      GWTPLH AA          L+++G
Sbjct: 53  EGITALHNAICGANYSIVDFLITAGANVNSPDSH--GWTPLHCAASCNDTVICMALVQHG 110

Query: 73  AFLPDDINDSRFNP---PLHYCPSLEWAYEEMMRF 104
           A     I  +  +        C      Y +   +
Sbjct: 111 A----AIFATTLSDGATAFEKCDPYREGYADCATY 141

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 82.3 bits (204), Expect = 3e-20
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           +  L  AA  G LEV+   ++   D     +   G T LH A        V FLI  GA
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE--GITALHNAICGANYSIVDFLITAGA 78

Query: 74 FLPDDIN--DSRFNPPLHY 90
              ++N  DS    PLH 
Sbjct: 79 ----NVNSPDSHGWTPLHC 93

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 73.8 bits (182), Expect = 5e-17
 Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 13/93 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           +VN       S G TPLH AA      +   L++ GA I A T  + G T        R+
Sbjct: 79  NVNSPD----SHGWTPLHCAASCNDTVICMALVQHGAAIFATTL-SDGATAFEKCDPYRE 133

Query: 62  --KEAVRFLIENGAFLPDDINDSRFNP--PLHY 90
              +   +L +        +          L  
Sbjct: 134 GYADCATYLADVEQ----SMGLMNSGAVYALWD 162

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 3/55 (5%)

Query: 11  KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAV 65
            S  V  L   +     E+       G  +    +     T    AA   ++  V
Sbjct: 153 NSGAVYALWDYSAEFGDEL---SFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 7/62 (11%)

Query: 33 LLERGADIDARTKGAC-GWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 89
          +L +        +        L  AA   + E V+  ++       D +  +      LH
Sbjct: 4  VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN----DPSQPNEEGITALH 59

Query: 90 YC 91
            
Sbjct: 60 NA 61

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 92.4 bits (231), Expect = 5e-25
 Identities = 35/79 (44%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G +PLHLAAQ GH    +VLL  G   DARTK     TPLH AA E     V  L+++GA
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV--DRTPLHMAASEGHANIVEVLLKHGA 91

Query: 74  FLPDDIN--DSRFNPPLHY 90
               D+N  D      LH+
Sbjct: 92  ----DVNAKDMLKMTALHW 106

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.4 bits (218), Expect = 6e-23
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
             TPLH+AA  GH  +++VLL+ GAD++A+       T LH A +   +E V  LI+ GA
Sbjct: 67  DRTPLHMAASEGHANIVEVLLKHGADVNAKDM--LKMTALHWATEHNHQEVVELLIKYGA 124

Query: 74  FLPDDIN--DSRFNPPLHY 90
               D++            
Sbjct: 125 ----DVHTQSKFCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 80.1 bits (199), Expect = 4e-20
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
              L  AA+ G  + + +L+  GA          G +PLH AA+         L+  G 
Sbjct: 2  LGKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 74 FLPDDIN--DSRFNPPLHY 90
                +        PLH 
Sbjct: 59 ----SRDARTKVDRTPLHM 73

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 72.8 bits (180), Expect = 2e-17
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
            +T LH A +  H EV+++L++ GAD+  ++K     T    +     ++    L
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQSKF--CKTAFDISIDNGNEDLAEIL 152

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 92.1 bits (230), Expect = 5e-25
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 8/80 (10%)

Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
          +G T LH+A+  G +  ++ LL+ G+D + +     GWTPLH A      + V  L+++ 
Sbjct: 9  RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH--AGWTPLHEACNHGHLKVVELLLQHK 66

Query: 73 AFLPDDIN--DSRFNPPLHY 90
          A     +N    + + PLH 
Sbjct: 67 A----LVNTTGYQNDSPLHD 82

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 83.2 bits (207), Expect = 2e-21
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
            VN        +  +PLH AA+ GH++++ +LL  GA  +A      G  P+     E  
Sbjct: 68  LVNTTG----YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF--GLRPVDYTDDESM 121

Query: 62  KEAVRFLIENGA 73
           K  +    +N +
Sbjct: 122 KSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 39.7 bits (94), Expect = 5e-05
 Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 1/30 (3%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDA 42
            G+ P+          ++  L E+     A
Sbjct: 108 FGLRPVDYTDDESMKSLLL-LPEKNESSSA 136

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 91.3 bits (228), Expect = 8e-25
 Identities = 43/91 (47%), Positives = 53/91 (58%), Gaps = 12/91 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN         G TPLHLAA+ GHLEV+ +LLE GAD++A+ K   G TPLH AA+   
Sbjct: 27  DVNAKD----KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGH 80

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            E V+ L+E GA    D+N  D     PLH 
Sbjct: 81  LEVVKLLLEAGA----DVNAKDKNGRTPLHL 107

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 88.2 bits (220), Expect = 1e-23
 Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPLHLAA+ GHLEV+ +LLE GAD++A+ K   G TPLH AA+    E V+ L+E GA
Sbjct: 68  GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA 125

Query: 74  F 74
           +
Sbjct: 126 Y 126

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 87.8 bits (219), Expect = 2e-23
 Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 8/79 (10%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
          G TPLHLAA+ GHLEV+ +LLE GAD++A+ K   G TPLH AA+    E V+ L+E GA
Sbjct: 2  GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 74 FLPDDIN--DSRFNPPLHY 90
              D+N  D     PLH 
Sbjct: 60 ----DVNAKDKNGRTPLHL 74

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 92.5 bits (231), Expect = 8e-25
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 12/91 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           D ++ A     +  + L LA+ GG+ +++ +LLER  DI+       G TPL  A +   
Sbjct: 61  DPHILA----KERESALSLASTGGYTDIVGLLLERDVDINIYDW--NGGTPLLYAVRGNH 114

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            + V  L+  GA    D+         P+  
Sbjct: 115 VKCVEALLARGA----DLTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 90.2 bits (225), Expect = 7e-24
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPL  A+  G +E +  LLE GAD     K     + L  A+     + V  L+E   
Sbjct: 36  GFTPLIWASAFGEIETVRFLLEWGADPHILAKE--RESALSLASTGGYTDIVGLLLERDV 93

Query: 74  FLPDDIN--DSRFNPPLHY 90
               DIN  D     PL Y
Sbjct: 94  ----DINIYDWNGGTPLLY 108

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 88.2 bits (220), Expect = 4e-23
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           D+N+  W     G TPL  A +G H++ ++ LL RGAD+        G+TP+  A     
Sbjct: 94  DINIYDW----NGGTPLLYAVRGNHVKCVEALLARGADLTTEADS--GYTPMDLAVALGY 147

Query: 62  KEAVRFLIENGAFLPDDIN 80
           ++  + +  +       + 
Sbjct: 148 RKVQQVIENHIL----KLF 162

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 83.6 bits (208), Expect = 3e-21
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGAD-IDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
              +H  A  G L+ +   L +G + ++   +   G+TPL  A+   + E VRFL+E G
Sbjct: 2  DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDER--GFTPLIWASAFGEIETVRFLLEWG 59

Query: 73 AFLPDDIN--DSRFNPPLHY 90
          A    D +         L  
Sbjct: 60 A----DPHILAKERESALSL 75

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 60.5 bits (148), Expect = 2e-12
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP 52
           D+   A      G TP+ LA   G+ +V  V+      +           P
Sbjct: 127 DLTTEA----DSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV--PADP 171

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 94.9 bits (237), Expect = 1e-24
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
            VN+      +  V+PLH A  GGHL  + +LL+ GA ++  T      TPL  A     
Sbjct: 84  AVNIIT----ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA--DWHTPLFNACVSGS 137

Query: 62  KEAVRFLIENGAFLPDDIN-DSRFNPPLHY 90
            + V  L+++GA     +  +S    P+H 
Sbjct: 138 WDCVNLLLQHGA----SVQPESDLASPIHE 163

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 92.9 bits (232), Expect = 6e-24
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
            V      P+S   +P+H AA+ GH+E ++ L+  G +ID +       TPL+ A + ++
Sbjct: 150 SVQ-----PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS--HLGTPLYLACENQQ 202

Query: 62  KEAVRFLIENGAFLPDDIN-DSRFNPPLHY 90
           +  V+ L+E+GA    D+N     + PLH 
Sbjct: 203 RACVKKLLESGA----DVNQGKGQDSPLHA 228

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 86.4 bits (215), Expect = 2e-21
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
             +P+H AA  GH   +  L+ +G  ++  T      +PLH A        V+ L+++GA
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD--HVSPLHEACLGGHLSCVKILLKHGA 116

Query: 74  FLPDDIN--DSRFNPPLHY 90
                +N   + ++ PL  
Sbjct: 117 ----QVNGVTADWHTPLFN 131

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 79.5 bits (197), Expect = 6e-19
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
             +PLH   +    E+  +L++ GAD  A+     G  P+     E     + FL   GA
Sbjct: 222 QDSPLHAVVRTASEELACLLMDFGADTQAKNA--EGKRPVELVPPESPLAQL-FLEREGA 278

Query: 74  FLPDDIN 80
                + 
Sbjct: 279 ----SLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 63.7 bits (156), Expect = 4e-13
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 15/79 (18%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
          G  P       G       LL      DA +     W+P+H AA    + ++R LI  G 
Sbjct: 33 GSKPAGPRDFPGIR-----LLSNPLMGDAVS----DWSPMHEAAIHGHQLSLRNLISQGW 83

Query: 74 FLPDDIN--DSRFNPPLHY 90
               +N   +    PLH 
Sbjct: 84 ----AVNIITADHVSPLHE 98

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 89.3 bits (223), Expect = 2e-24
 Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 8/79 (10%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
          G TPLHLAA+ GHLEV+ +LLE GAD++A+ K   G TPLH AA+    E V+ L+E GA
Sbjct: 2  GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 74 FLPDDIN--DSRFNPPLHY 90
              D+N  D     PLH 
Sbjct: 60 ----DVNAKDKNGRTPLHL 74

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 89.3 bits (223), Expect = 2e-24
 Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query: 2  DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
          DVN         G TPLHLAA+ GHLEV+ +LLE GAD++A+ K   G TPLH AA+   
Sbjct: 27 DVNAKD----KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGH 80

Query: 62 KEAVRFLIENGAF 74
           E V+ L+E GA+
Sbjct: 81 LEVVKLLLEAGAY 93

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 89.8 bits (224), Expect = 2e-24
 Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 12/91 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN         G  PLH AA  G LE+++ LL +GADI+A  K     TPL +A  E  
Sbjct: 32  DVNRTL----EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH--HITPLLSAVYEGH 85

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
              V+ L+  GA    D              
Sbjct: 86  VSCVKLLLSKGA----DKTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 87.5 bits (218), Expect = 2e-23
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 9  GPK-SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 67
          GP  S        A + G L+ +   + +G D++   +G  G  PLH AA   + E + F
Sbjct: 1  GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG--GRKPLHYAADCGQLEILEF 58

Query: 68 LIENGAFLPDDIN--DSRFNPPLHY 90
          L+  GA    DIN  D     PL  
Sbjct: 59 LLLKGA----DINAPDKHHITPLLS 79

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 70.1 bits (173), Expect = 1e-16
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 2   DVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           D+N        K  +TPL  A   GH+  + +LL +GAD   +     G T       + 
Sbjct: 65  DINA-----PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD--GLTAFEATDNQA 117

Query: 61  KKEAVR 66
            K  ++
Sbjct: 118 IKALLQ 123

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 91.3 bits (228), Expect = 3e-24
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           +  TPLH AA    + V++ LL+ GAD+ A+ KG  G  PLH A      E    L+++G
Sbjct: 41  RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG--GLVPLHNACSYGHYEVAELLVKHG 98

Query: 73  AFLPDDIN--DSRFNPPLHY 90
           A     +N  D     PLH 
Sbjct: 99  A----VVNVADLWKFTPLHE 114

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 81.7 bits (203), Expect = 1e-20
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
          S+    L  AA+ G +E +  L    + ++ R       TPLH AA   +   V +L+++
Sbjct: 6  SEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 72 GAFLPDDIN--DSRFNPPLHY 90
          GA    D++  D     PLH 
Sbjct: 65 GA----DVHAKDKGGLVPLHN 81

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 77.8 bits (193), Expect = 4e-19
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 2   DVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
            VNV           TPLH AA  G  E+  +LL+ GAD   + +   G TPL    K+ 
Sbjct: 100 VVNV-----ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD--GNTPLD-LVKDG 151

Query: 61  KKEAVRFLIENGA 73
             +    L  + A
Sbjct: 152 DTDIQDLLRGDAA 164

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 91.3 bits (228), Expect = 3e-24
 Identities = 40/91 (43%), Positives = 50/91 (54%), Gaps = 12/91 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN         G TPLHLAA  GHLE+++VLL+ GAD++A      G TPL  AA    
Sbjct: 39  DVNAEDA----SGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA--GMTPLRLAALFGH 92

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            E V  L++NGA    D+N  D   + PLH 
Sbjct: 93  LEIVEVLLKNGA----DVNANDMEGHTPLHL 119

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 88.2 bits (220), Expect = 4e-23
 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G+TPL LAA  GHLE+++VLL+ GAD++A      G TPLH AA     E V  L++NGA
Sbjct: 80  GMTPLRLAALFGHLEIVEVLLKNGADVNANDME--GHTPLHLAAMFGHLEIVEVLLKNGA 137

Query: 74  FLPDDIN--DSRFNPPLHY 90
               D+N  D         
Sbjct: 138 ----DVNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 84.7 bits (211), Expect = 9e-22
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
              L  AA+ G  + + +L+  GAD++A      GWTPLH AA     E V  L++NGA
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDA--SGWTPLHLAAFNGHLEIVEVLLKNGA 71

Query: 74 FLPDDIN--DSRFNPPLHY 90
              D+N  D     PL  
Sbjct: 72 ----DVNAVDHAGMTPLRL 86

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 79.7 bits (198), Expect = 7e-20
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
           G TPLHLAA  GHLE+++VLL+ GAD++A+ K   G T    +     ++    L +
Sbjct: 113 GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK--FGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 53.5 bits (130), Expect = 6e-10
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 36 RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
          RG+       G+     L  AA+  + + VR L+ NGA    D+N  D+    PLH 
Sbjct: 2  RGSHHHHH-HGSDLGKKLLEAARAGRDDEVRILMANGA----DVNAEDASGWTPLHL 53

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 90.9 bits (227), Expect = 3e-24
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 12/91 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           D  +          + L LA   G+ +++ +LL+ G D++       G TPL  A     
Sbjct: 61  DPQLLG----KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN--GGTPLLYAVHGNH 114

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            + V+ L+E+GA    D           +  
Sbjct: 115 VKCVKMLLESGA----DPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 90.5 bits (226), Expect = 5e-24
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPL  AA  G + V++ LL+ GAD     KG    + L  A  +   + V+ L++ G 
Sbjct: 36  GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG--RESALSLACSKGYTDIVKMLLDCGV 93

Query: 74  FLPDDIN--DSRFNPPLHY 90
               D+N  D     PL Y
Sbjct: 94  ----DVNEYDWNGGTPLLY 108

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 89.0 bits (222), Expect = 2e-23
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
              +H  A  G +  +   +E+   I+   +   G+TPL  AA   +   V FL++NGA
Sbjct: 3  NSLSVHQLAAQGEMLYLATRIEQENVINHTDEE--GFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 74 FLPDDIN--DSRFNPPLHY 90
              D           L  
Sbjct: 61 ----DPQLLGKGRESALSL 75

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 87.8 bits (219), Expect = 5e-23
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN   W     G TPL  A  G H++ + +LLE GAD    T    G+  +  A     
Sbjct: 94  DVNEYDW----NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS--GYNSMDLAVALGY 147

Query: 62  KEAVRFLIENGAFLPDDIN 80
           +   + +  +       + 
Sbjct: 148 RSVQQVIESHLL----KLL 162

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 54.3 bits (132), Expect = 4e-10
 Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 4/44 (9%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
           D  +        G   + LA   G+  V  V+      +    K
Sbjct: 127 DPTIET----DSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 93.7 bits (234), Expect = 4e-24
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G T LH+AA  G+ EV+ +L++   D++ +     GWTPLH AA   K+EA R L+EN  
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD--GWTPLHAAAHWGKEEACRILVENLC 256

Query: 74  FLPDDIN--DSRFNPPLHYC 91
               D+   +          
Sbjct: 257 ----DMEAVNKVGQTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 89.1 bits (222), Expect = 2e-22
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 12/92 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           D+N A       G+T LH A    +++++  L+E GA+I+       GW PLH AA    
Sbjct: 65  DINYA----NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE--GWIPLHAAASCGY 118

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHYC 91
            +   +LI  GA     +   +S  + PL   
Sbjct: 119 LDIAEYLISQGA----HVGAVNSEGDTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 85.2 bits (212), Expect = 5e-21
 Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 13/91 (14%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
              V     K         A   G  E +  LLERGADI+       G T LH A  +  
Sbjct: 33  KTKV-----KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVD--GLTALHQACIDDN 85

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            + V+FL+ENGA    +IN  D+    PLH 
Sbjct: 86  VDMVKFLVENGA----NINQPDNEGWIPLHA 112

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.7 bits (195), Expect = 2e-18
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           ++N       ++G  PLH AA  G+L++ + L+ +GA + A      G TPL  A +E  
Sbjct: 98  NINQPD----NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE--GDTPLDIAEEEAM 151

Query: 62  KEAVRFLIENGAFLPDDINDSR 83
           +E ++  +        DI  +R
Sbjct: 152 EELLQNEVNRQG---VDIEAAR 170

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.5 bits (192), Expect = 5e-18
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPLH AA  G  E   +L+E   D++A  K   G T    A ++          +   
Sbjct: 232 GWTPLHAAAHWGKEEACRILVENLCDMEAVNKV--GQTAFDVADEDILGYLEELQKKQNL 289

Query: 74  FLPDDINDSR 83
                 ++ R
Sbjct: 290 ----LHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 74.5 bits (184), Expect = 6e-17
 Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 9/82 (10%)

Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
          +K      L    G    ++  + +      +            A      E V  L+E 
Sbjct: 6  AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD---DGAVFLAACSSGDTEEVLRLLER 62

Query: 72 GAFLPDDIN--DSRFNPPLHYC 91
          GA    DIN  +      LH  
Sbjct: 63 GA----DINYANVDGLTALHQA 80

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 72.9 bits (180), Expect = 2e-16
 Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 16  TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
                  +    +    L     +     K   G T LH AA +   E ++ LI+     
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAK--SGGTALHVAAAKGYTEVLKLLIQARY-- 223

Query: 76  PDDIN--DSRFNPPLHY 90
             D+N  D     PLH 
Sbjct: 224 --DVNIKDYDGWTPLHA 238

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.1 bits (152), Expect = 2e-12
 Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 14/79 (17%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPL +A +    E++   + R         G           +   ++A ++L     
Sbjct: 139 GDTPLDIAEEEAMEELLQNEVNRQ--------GVDIEAARKEEERIMLRDARQWLNSGHI 190

Query: 74  FLPDDIN--DSRFNPPLHY 90
               +           LH 
Sbjct: 191 ----NDVRHAKSGGTALHV 205

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 3/33 (9%), Positives = 12/33 (36%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKG 46
           G T   +A +     + ++  ++      + + 
Sbjct: 265 GQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 37.1 bits (87), Expect = 9e-04
 Identities = 3/51 (5%), Positives = 7/51 (13%), Gaps = 6/51 (11%)

Query: 43 RTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYC 91
          +   A              +  +   +                    L  C
Sbjct: 2  KMADAKQKRNEQLKRWIGSETDLEPPVVKRK----KTKVKFDDGAVFLAAC 48

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 92.1 bits (230), Expect = 5e-24
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G + LH AA   +++   VLL+ GA+ D +       TPL  AA+E   E  + L+++ A
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNN--REETPLFLAAREGSYETAKVLLDHFA 182

Query: 74  FLPDDIN--DSRFNPPLHY 90
               + +  D     P   
Sbjct: 183 ----NRDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 88.2 bits (220), Expect = 1e-22
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPL LAA+     +++ L+   AD++A      G + LH AA     +A   L++NGA
Sbjct: 92  GTTPLILAARLAVEGMLEDLINSHADVNAVDD--LGKSALHWAAAVNNVDAAVVLLKNGA 149

Query: 74  FLPDDIN--DSRFNPPLHY 90
               + +  ++R   PL  
Sbjct: 150 ----NKDMQNNREETPLFL 164

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 87.9 bits (219), Expect = 2e-22
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
          G T LHLAA+    +    LLE  AD + +     G TPLH A     +   + LI N A
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDN--MGRTPLHAAVSADAQGVFQILIRNRA 82

Query: 74 FLPDDIN--DSRFNPPLHY 90
              D++        PL  
Sbjct: 83 ---TDLDARMHDGTTPLIL 98

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 85.5 bits (213), Expect = 2e-21
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           +  TPL LAA+ G  E   VLL+  A+ D          P   A +    + VR L E  
Sbjct: 157 REETPLFLAAREGSYETAKVLLDHFANRDITDH--MDRLPRDIAQERMHHDIVRLLDEYN 214

Query: 73  AFLPDDINDSRFNPPLH 89
                       +P LH
Sbjct: 215 LVR---------SPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 70.1 bits (173), Expect = 9e-16
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 24 GGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--D 81
          G    V+   + +GA +        G T LH AA+  + +A + L+E  A    D N  D
Sbjct: 1  GDAPAVISDFIYQGASLHN-QTDRTGETALHLAARYSRSDAAKRLLEASA----DANIQD 55

Query: 82 SRFNPPLHY 90
          +    PLH 
Sbjct: 56 NMGRTPLHA 64

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 93.0 bits (232), Expect = 5e-24
 Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           D+N       + G TPLHLA +     V+++LL+ GAD  AR  G  G TPL +A     
Sbjct: 183 DLNKPE---PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG--GRTPLGSALLRPN 237

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
               R L  +GA               P   
Sbjct: 238 PILARLLRAHGA----PEPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 89.5 bits (223), Expect = 1e-22
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
            G TPLH+A      E++ +L + GAD++      CG TPLH A + +    +  L++ G
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT-CGRTPLHLAVEAQAASVLELLLKAG 215

Query: 73  AFLPDDIN--DSRFNPPLHY 90
           A    D          PL  
Sbjct: 216 A----DPTARMYGGRTPLGS 231

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 87.2 bits (217), Expect = 8e-22
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
            G T LHLAA  G    ++ L   GA +    +G  G T LH A + R       L++  
Sbjct: 44  LGQTALHLAAILGEASTVEKLYAAGAGVLVAERG--GHTALHLACRVRAHTCACVLLQPR 101

Query: 73  AFLPDDIND 81
              P D +D
Sbjct: 102 PSHPRDASD 110

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 84.9 bits (211), Expect = 7e-21
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGAD---IDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
          G T LHLA    H   +D LL   A    +D +     G T LH AA   +   V  L  
Sbjct: 9  GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL--GQTALHLAAILGEASTVEKLYA 66

Query: 71 NGAFLPDDIN--DSRFNPPLHY 90
           GA     +   +   +  LH 
Sbjct: 67 AGA----GVLVAERGGHTALHL 84

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.5 bits (171), Expect = 3e-15
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 2/59 (3%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           G TPL  A    +  +  +L   GA            +P  ++  +   +      E  
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAPEPEDGGD--KLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 17/103 (16%), Positives = 26/103 (25%), Gaps = 22/103 (21%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK-----------GACGW 50
            V VA       G T LHLA +        VLL+                          
Sbjct: 70  GVLVAE----RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 51  TPLHTAAKER-KKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            P    ++   + E      +        +   +   + PLH 
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRL----QLEAENYDGHTPLHV 164

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 91.5 bits (228), Expect = 9e-24
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
            G T LHLA+  G+L ++++L+  GAD++A+     G T LH A   +  + V  L++ G
Sbjct: 116 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEP-CNGRTALHLAVDLQNPDLVSLLLKCG 174

Query: 73  AFLPDDIN--DSRFNPPLHY 90
           A    D+N    +   P   
Sbjct: 175 A----DVNRVTYQGYSPYQL 190

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 85.7 bits (213), Expect = 2e-21
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 11/91 (12%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DVN         G T LHLA    + +++ +LL+ GAD++  T    G++P         
Sbjct: 142 DVNAQE---PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ--GYSPYQLTWGRPS 196

Query: 62  KEAVRFLIENGAFLPDDINDSRFNP--PLHY 90
               + L +       +             Y
Sbjct: 197 TRIQQQLGQLTL----ENLQMLPESEDEESY 223

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 85.3 bits (212), Expect = 2e-21
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
             TPLHLA      E+ + LL  G D + R     G TPLH A ++    +V  L ++  
Sbjct: 45  QQTPLHLAVITNQPEIAEALLGAGCDPELRDF--RGNTPLHLACEQGCLASVGVLTQSCT 102

Query: 74  --FLPDDINDSRFN--PPLHY 90
              L   +  + +N    LH 
Sbjct: 103 TPHLHSILKATNYNGHTCLHL 123

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 79.1 bits (196), Expect = 4e-19
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 12/83 (14%)

Query: 14 GVTPLHLAAQGGH----LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
          G + LHLA         +EV+  +    A ++ +       TPLH A    + E    L+
Sbjct: 8  GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL--QQTPLHLAVITNQPEIAEALL 65

Query: 70 ENGAFLPDDIN--DSRFNPPLHY 90
            G     D    D R N PLH 
Sbjct: 66 GAGC----DPELRDFRGNTPLHL 84

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 88.0 bits (219), Expect = 1e-23
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 10/97 (10%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           S     L  AA+ G  + + +L+  GAD+ A+ K   G TPLH AA+    E V+ L+E 
Sbjct: 22  SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN--GSTPLHLAARNGHLEVVKLLLEA 79

Query: 72  GAFLPDDI--NDSRFNPPLHYCPSLEWAYEEMMRFQR 106
           GA    D+   D           S++   E++    +
Sbjct: 80  GA----DVXAQDKFGKTAFDI--SIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 73.4 bits (181), Expect = 6e-18
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
           +   H      L+ RG+ + +          L  AA+  + + VR L+ NGA    D+ 
Sbjct: 1  GSSHHHHHHSSGLVPRGSHMGSD-----LGKKLLEAARAGQDDEVRILMANGA----DVA 51

Query: 81 --DSRFNPPLHY 90
            D   + PLH 
Sbjct: 52 AKDKNGSTPLHL 63

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 89.0 bits (222), Expect = 2e-23
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G   +H AA+ G L+ +  LLE  AD++       G  PLH AAKE     V FL+++ A
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVNIEDN--EGNLPLHLAAKEGHLRVVEFLVKHTA 127

Query: 74  FLPDDIN--DSRFNPPLHY 90
               ++   + + +     
Sbjct: 128 ---SNVGHRNHKGDTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 82.0 bits (204), Expect = 9e-21
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
               L  AA  G LE +  LL+   +++A+     G T L         E  R L+  G
Sbjct: 4  PWGNELASAAARGDLEQLTSLLQNNVNVNAQNG--FGRTALQVMKLGN-PEIARRLLLRG 60

Query: 73 AFLPDDIN--DSRFNPPLHY 90
          A    + +  D      +H 
Sbjct: 61 A----NPDLKDRTGFAVIHD 76

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 81.3 bits (202), Expect = 1e-20
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGA-DIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           G  PLHLAA+ GHL V++ L++  A ++  R     G T    A    + E V  +  NG
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARLYGRNEVVSLMQANG 160

Query: 73  A 73
           A
Sbjct: 161 A 161

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 90.8 bits (226), Expect = 2e-23
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 11/82 (13%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G+T LH A   GH E++  L++ G +++A      GWTPLH AA     +  +FL+E+GA
Sbjct: 70  GITALHNAVCAGHTEIVKFLVQFGVNVNAADS--DGWTPLHCAASCNNVQVCKFLVESGA 127

Query: 74  FLPDDIN-----DSRFNPPLHY 90
                +      D +       
Sbjct: 128 ----AVFAMTYSDMQTAADKCE 145

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 88.1 bits (219), Expect = 2e-22
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
            V           +  L  ++  G  +++  ++    D         G T LH A     
Sbjct: 30  RVKF-----NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE--GITALHNAVCAGH 82

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            E V+FL++ G     ++N  DS    PLH 
Sbjct: 83  TEIVKFLVQFGV----NVNAADSDGWTPLHC 109

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 80.7 bits (200), Expect = 1e-19
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART-KGACGWTPLHTAAKER 60
           +VN A     S G TPLH AA   +++V   L+E GA + A T              +E 
Sbjct: 95  NVNAAD----SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150

Query: 61  KKEAVRFLIENGAFLPDDIN 80
             +  +FL          + 
Sbjct: 151 YTQCSQFLYGVQE----KMG 166

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 78.0 bits (193), Expect = 1e-18
 Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 9/84 (10%)

Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
          P+  G   L    +    +     +  G  +            L  ++ E + + V+ +I
Sbjct: 1  PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL---PLALLLDSSLEGEFDLVQRII 57

Query: 70 ENGAFLPDDIN--DSRFNPPLHYC 91
                  D +  +      LH  
Sbjct: 58 YEVD----DPSLPNDEGITALHNA 77

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 6/51 (11%), Positives = 12/51 (23%), Gaps = 2/51 (3%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKE 63
           +         + G+ +    L      +    KG      L     +   E
Sbjct: 138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG--VIYALWDYEPQNDDE 186

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 93.0 bits (232), Expect = 2e-23
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
          + +  +H+AA+ G  + +  L+E G     + +   G T LH A K    +  ++L   G
Sbjct: 19 ENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRF--GCTALHLACKFGCVDTAKYLASVG 76

Query: 73 AFLPDDINDSRFNPPLHY 90
                 +      P+H 
Sbjct: 77 E----VHSLWHGQKPIHL 90

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 85.7 bits (213), Expect = 9e-21
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 13/85 (15%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLER-----GADIDARTKGACGWTPLHTAAKERKKEAVRF 67
              TPL  A +  + E +D++++         +D   K   G + LH A     ++    
Sbjct: 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK--QGNSHLHWAILINWEDVAMR 229

Query: 68  LIENGAFLPDDIN--DSRFNPPLHY 90
            +E G     D+N  D+    PL+ 
Sbjct: 230 FVEMGI----DVNMEDNEHTVPLYL 250

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 85.3 bits (212), Expect = 1e-20
 Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 6/68 (8%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
             +  +  AA     EV+ +L E+  ++        G        K+      R  +   
Sbjct: 289 VWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNT--GAGGAVKRKKKAAPAVKRMKLAPS 346

Query: 73  AFLPDDIN 80
           A     + 
Sbjct: 347 A----PVR 350

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.2 bits (209), Expect = 3e-20
 Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 13/89 (14%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           +G + LH A      +V    +E G D++          PL+ + +       + L++  
Sbjct: 210 QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN--EHTVPLYLSVRAAMVLLTKELLQKT 267

Query: 73  AFLPD---------DIN--DSRFNPPLHY 90
                          +      +   +  
Sbjct: 268 DVFLIQACPYHNGTTVLPDRVVWLDFVPA 296

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.5 bits (202), Expect = 3e-19
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 13  KGVTPLHLAAQGG--HLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
           KG T LH     G  +LE++ +L++ GA   A+ K     TPL  A + R +EA+  +++
Sbjct: 137 KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA--DETPLMRAMEFRNREALDLMMD 194

Query: 71  NGAFLPD-DIN--DSRFNPPLHY 90
                    ++  + + N  LH+
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHW 217

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 79.1 bits (196), Expect = 2e-18
 Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 17/91 (18%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADI-----------DARTKGACGWTPLHTAAKERK 61
           +   PL+L+ +   + +   LL++                           +  AA   K
Sbjct: 243 EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
           +E ++ L E       ++    +        
Sbjct: 303 QEVLQLLQEKLD----EVVRSLNTGAGGAVK 329

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 69.5 bits (171), Expect = 6e-15
 Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 16/82 (19%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK--KEAVRFLIE 70
           +G  P  L  +    EV             +     G T LH          E ++ L++
Sbjct: 110 RGQMPESLLNECDEREVN------EIGSHVKHC--KGQTALHWCVGLGPEYLEMIKILVQ 161

Query: 71  NGAFLPDDIN--DSRFNPPLHY 90
            GA         D     PL  
Sbjct: 162 LGA----SPTAKDKADETPLMR 179

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 16/91 (17%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G  P+HLA      +++  L+E   +         G  P     +  ++E          
Sbjct: 84  GQKPIHLAVMANKTDLVVALVEGAKER--------GQMPESLLNECDEREVNEIGS---- 131

Query: 74  FLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
                +   +    LH+C  L   Y EM++ 
Sbjct: 132 ----HVKHCKGQTALHWCVGLGPEYLEMIKI 158

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.8 bits (151), Expect = 3e-12
 Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 2/43 (4%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA 56
           G        +     V  + L   A +  R++          +
Sbjct: 323 GAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRS--RARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.6 bits (122), Expect = 3e-08
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 8/56 (14%)

Query: 37 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            +             +H AA++ + + VR LIE G          +      LH 
Sbjct: 10 KLNRIKSDD--ENMEKIHVAARKGQTDEVRRLIETGV----SPTIQNRFGCTALHL 59

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 88.2 bits (220), Expect = 2e-23
 Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G+TPL+LA   GHLE+++VLL+ GAD++A      G+TPLH AA     E    L+++GA
Sbjct: 47  GLTPLYLATAHGHLEIVEVLLKNGADVNAVDA--IGFTPLHLAAFIGHLEIAEVLLKHGA 104

Query: 74  FLPDDIN--DSRFNPPLHY 90
               D+N  D         
Sbjct: 105 ----DVNAQDKFGKTAFDI 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 82.4 bits (205), Expect = 3e-21
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
            L  AA+ G  + + +L+  GAD++A+ +   G TPL+ A      E V  L++NGA  
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEY--GLTPLYLATAHGHLEIVEVLLKNGA-- 71

Query: 76 PDDIN--DSRFNPPLHY 90
            D+N  D+    PLH 
Sbjct: 72 --DVNAVDAIGFTPLHL 86

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 76.3 bits (189), Expect = 6e-19
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
           G TPLHLAA  GHLE+ +VLL+ GAD++A+ K   G T    +     ++    L +
Sbjct: 80  GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK--FGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.0 bits (126), Expect = 1e-09
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 36 RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
          RG+       G+     L  AA+  + + VR L+ NGA    D+N  D     PL+ 
Sbjct: 2  RGSHHHHH-HGSDLGKKLLEAARAGQDDEVRILMANGA----DVNAKDEYGLTPLYL 53

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 89.8 bits (224), Expect = 4e-23
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 12/91 (13%)

Query: 2  DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
          +  +          +PLH AA+ GH+++  +L++ GA+ID  ++     TPL  AA+   
Sbjct: 3  NFKMEH----QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE--DQRTPLMEAAENNH 56

Query: 62 KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
           EAV++LI+ GA     ++  D+  +  LH 
Sbjct: 57 LEAVKYLIKAGA----LVDPKDAEGSTCLHL 83

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 88.6 bits (221), Expect = 1e-22
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
              TPL  AA+  HLE +  L++ GA +D +     G T LH AAK+   E V++L+ NG
Sbjct: 43  DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA--EGSTCLHLAAKKGHYEVVQYLLSNG 100

Query: 73  AFLPDDIN--DSRFNPPLHY 90
                D+N  D     P+ +
Sbjct: 101 Q---MDVNCQDDGGWTPMIW 117

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 88.6 bits (221), Expect = 1e-22
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           +    LH AA  G +++ ++LL    D+ A      G +PLH AA+E + + V   +   
Sbjct: 143 EENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH--GDSPLHIAARENRYDCVVLFLSRD 200

Query: 73  AFLPDDIN--DSRFNPPLHY 90
           +    D+   +     PL  
Sbjct: 201 S----DVTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 88.6 bits (221), Expect = 1e-22
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TP+  A +  H++++ +LL +G+DI+ R         LH AA     +    L+    
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDN--EENICLHWAAFSGCVDIAEILLAAKC 168

Query: 74  FLPDDIN--DSRFNPPLHY 90
               D++  +   + PLH 
Sbjct: 169 ----DLHAVNIHGDSPLHI 183

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 80.9 bits (201), Expect = 1e-19
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
            G +PLH+AA+    + + + L R +D+  + K   G TPL  A+   +  +   + +  
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKE--GETPLQCASLNSQVWSALQMSKAL 233

Query: 73  A 73
            
Sbjct: 234 Q 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.8 bits (115), Expect = 1e-07
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 38 ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
           +     +     +PLH AA+    +    L++ GA    +I+        PL  
Sbjct: 2  MNFKMEHQN--KRSPLHAAAEAGHVDICHMLVQAGA----NIDTCSEDQRTPLME 50

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.2 bits (103), Expect = 7e-06
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGAD 39
           G TPL  A+    +     + +   D
Sbjct: 210 GETPLQCASLNSQVWSALQMSKALQD 235

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.6 bits (231), Expect = 5e-23
 Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           + N+A     + G TPLH+AA+ GH+E +  LLE+ A     TK   G+TPLH AAK  K
Sbjct: 105 NPNLAT----TAGHTPLHIAAREGHVETVLALLEKEASQACMTKK--GFTPLHVAAKYGK 158

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
                 L+E  A      N        PLH 
Sbjct: 159 VRVAELLLERDA----HPNAAGKNGLTPLHV 185

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.2 bits (230), Expect = 5e-23
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 12/91 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           + N+        G+TPLHL AQ GH+ V DVL++ G  +DA T+   G+TPLH A+    
Sbjct: 270 NGNLGN----KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM--GYTPLHVASHYGN 323

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            + V+FL+++ A    D+N        PLH 
Sbjct: 324 IKLVKFLLQHQA----DVNAKTKLGYSPLHQ 350

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.8 bits (229), Expect = 8e-23
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
             NV+      K  TPLH+AA+ GH EV   LL+  A ++A+ K     TPLH AA+   
Sbjct: 39  SPNVS----NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD--DQTPLHCAARIGH 92

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
              V+ L+EN A    + N   +  + PLH 
Sbjct: 93  TNMVKLLLENNA----NPNLATTAGHTPLHI 119

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.8 bits (229), Expect = 9e-23
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G+TPLH+A    +L+++ +LL RG    +      G+TPLH AAK+ + E  R L++ G 
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN--GYTPLHIAAKQNQVEVARSLLQYGG 236

Query: 74  FLPDDIN--DSRFNPPLHY 90
                 N    +   PLH 
Sbjct: 237 ----SANAESVQGVTPLHL 251

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.4 bits (228), Expect = 1e-22
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           KG TPLH+AA+ G + V ++LLER A  +A  K   G TPLH A      + V+ L+  G
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN--GLTPLHVAVHHNNLDIVKLLLPRG 202

Query: 73  AFLPDDIN--DSRFNPPLHY 90
                  +        PLH 
Sbjct: 203 G----SPHSPAWNGYTPLHI 218

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.0 bits (227), Expect = 2e-22
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 8/80 (10%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           +GVTPLHLAAQ GH E++ +LL + A+ +   K   G TPLH  A+E        LI++G
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS--GLTPLHLVAQEGHVPVADVLIKHG 301

Query: 73  AFLPDDIN--DSRFNPPLHY 90
                 ++        PLH 
Sbjct: 302 V----MVDATTRMGYTPLHV 317

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 90.6 bits (226), Expect = 2e-22
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
             +  A      G TPLH+AA+   +EV   LL+ G   +A +    G TPLH AA+E  
Sbjct: 204 SPHSPA----WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV--QGVTPLHLAAQEGH 257

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            E V  L+   A    + N  +     PLH 
Sbjct: 258 AEMVALLLSKQA----NGNLGNKSGLTPLHL 284

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 90.6 bits (226), Expect = 2e-22
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 2  DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
                      G+TPLH+A+  GHL ++  LL+RGA  +         TPLH AA+   
Sbjct: 6  SGGGGG----ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV--KVETPLHMAARAGH 59

Query: 62 KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
           E  ++L++N A     +N        PLH 
Sbjct: 60 TEVAKYLLQNKA----KVNAKAKDDQTPLHC 86

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.1 bits (222), Expect = 8e-22
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPLH+A+  G+++++  LL+  AD++A+TK   G++PLH AA++   + V  L++NGA
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL--GYSPLHQAAQQGHTDIVTLLLKNGA 368

Query: 74  FLPDDIN--DSRFNPPLHY 90
                 N   S    PL  
Sbjct: 369 ----SPNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.1 bits (191), Expect = 1e-17
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
            G +PLH AAQ GH +++ +LL+ GA  +  +    G TPL  A +         L    
Sbjct: 343 LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS--DGTTPLAIAKRLGYISVTDVLKVVT 400

Query: 73  A 73
            
Sbjct: 401 D 401

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.1 bits (139), Expect = 1e-10
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 36 RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
           G       +   G TPLH A+       V+ L++ GA      N  + +   PLH 
Sbjct: 3  PGISGGGGGES--GLTPLHVASFMGHLPIVKNLLQRGA----SPNVSNVKVETPLHM 53

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 14/64 (21%)

Query: 13  KGVTPLHLAAQGGHLEVMDVL---LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
            G TPL +A + G++ V DVL    +  + +    K     +   T         V  ++
Sbjct: 376 DGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK--HRMSFPET---------VDEIL 424

Query: 70  ENGA 73
           +   
Sbjct: 425 DVSE 428

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.4 bits (223), Expect = 6e-23
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
            V+           TPLH A + GHL ++  L++ GAD         G + +H AA+   
Sbjct: 67  IVDQLG---GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE--GCSCIHLAAQFGH 121

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
              V +LI  G     D++  D     PL +
Sbjct: 122 TSIVAYLIAKGQ----DVDMMDQNGMTPLMW 148

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.0 bits (222), Expect = 1e-22
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
              +  A Q G  E    L+E G D+    K     T LH AA   + + V++ I  GA
Sbjct: 9  STWDIVKATQYGIYERCRELVEAGYDVRQPDK--ENVTLLHWAAINNRIDLVKYYISKGA 66

Query: 74 FLPDDINDSRFNP---PLHY 90
               ++    +    PLH+
Sbjct: 67 ----IVDQLGGDLNSTPLHW 82

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 86.7 bits (216), Expect = 7e-22
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
            VN+     K    T LH A   G+  V+ +LLE GA++DA+     G + L  A + + 
Sbjct: 168 SVNLGD---KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK--GESALDLAKQRKN 222

Query: 62  KEAVRFLIENGA 73
              +  L E   
Sbjct: 223 VWMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 85.6 bits (213), Expect = 2e-21
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 14  GVTPLHLAAQGGH-LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           G+TPL  AA   H ++   +LL     ++   K     T LH A        +  L+E G
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK-YHKNTALHWAVLAGNTTVISLLLEAG 200

Query: 73  AFLPDDIN--DSRFNPPLHY 90
           A    +++  + +    L  
Sbjct: 201 A----NVDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 85.6 bits (213), Expect = 2e-21
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKE-RKKEAVRFLIEN 71
           +G + +HLAAQ GH  ++  L+ +G D+D   +   G TPL  AA      +  R L+  
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN--GMTPLMWAAYRTHSVDPTRLLLTF 165

Query: 72  GAFLPDDIN---DSRFNPPLHY 90
                  +N       N  LH+
Sbjct: 166 NV----SVNLGDKYHKNTALHW 183

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.9 bits (110), Expect = 7e-07
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDA 42
           KG + L LA Q  ++ +++ L E       
Sbjct: 209 KGESALDLAKQRKNVWMINHLQEARQAKGY 238

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 91.4 bits (228), Expect = 6e-23
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 12/91 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           +VN          +TPLH+AA+  H +VM+VL + GA ++A      G T LH AA    
Sbjct: 239 NVNEKN----KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS--LGQTALHRAALAGH 292

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            +  R L+  G+    D +    +       
Sbjct: 293 LQTCRLLLSYGS----DPSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 90.6 bits (226), Expect = 1e-22
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
             TPLHLAA    + ++ +LL+ GAD+ A+ KG  G  PLH A      E    L+++GA
Sbjct: 58  KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG--GLVPLHNACSYGHYEVTELLLKHGA 115

Query: 74  FLPDDIN--DSRFNPPLHY 90
                +N  D     PLH 
Sbjct: 116 ----CVNAMDLWQFTPLHE 130

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 89.1 bits (222), Expect = 4e-22
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           DV+         G+ PLH A   GH EV ++LL+ GA ++A       +TPLH AA + +
Sbjct: 83  DVHAKD----KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL--WQFTPLHEAASKNR 136

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            E    L+ +GA    D    +      +  
Sbjct: 137 VEVCSLLLSHGA----DPTLVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.2 bits (212), Expect = 1e-20
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 11  KSKGVTPLHLAAQGGH---LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 67
                T LH A    H    +V ++LL +GA+++ + K     TPLH AA+    + +  
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD--FMTPLHVAAERAHNDVMEV 265

Query: 68  LIENGAFLPDDIN--DSRFNPPLHY 90
           L ++GA     +N  DS     LH 
Sbjct: 266 LHKHGA----KMNALDSLGQTALHR 286

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.6 bits (200), Expect = 6e-19
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
              TPLH AA    +EV  +LL  GAD         G + +  A     +E + +  +  
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH--GKSAVDMAPTPELRERLTYEFKGH 180

Query: 73  AFL 75
           + L
Sbjct: 181 SLL 183

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.2 bits (199), Expect = 8e-19
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 11/78 (14%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
            G T LH AA  GHL+   +LL  G+D    +    G+T           EAV+ ++   
Sbjct: 279 LGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQ--GFTAAQMGN-----EAVQQILSES 331

Query: 73  AFLPDDINDSRFNPPLHY 90
                 +  S  +  L  
Sbjct: 332 T----PMRTSDVDYRLLE 345

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 78.7 bits (195), Expect = 3e-18
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 13/92 (14%)

Query: 2  DVNVAAWGPKSKGVTPLHLAA-QGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
             +            L  AA  G   ++M +L     +  A        TPLH AA   
Sbjct: 16 KAVLT----GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDG--RKSTPLHLAAGYN 69

Query: 61 KKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
          +   V+ L+++GA    D++  D     PLH 
Sbjct: 70 RVRIVQLLLQHGA----DVHAKDKGGLVPLHN 97

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 70.2 bits (173), Expect = 3e-15
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 28/102 (27%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC-------------------GWTPL 53
            G + + +A      E +    +  + + A  +                        T L
Sbjct: 156 HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215

Query: 54  HTAAKE---RKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
           H A      ++K+    L+  GA    ++N  +  F  PLH 
Sbjct: 216 HCAVASLHPKRKQVAELLLRKGA----NVNEKNKDFMTPLHV 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 89.8 bits (224), Expect = 6e-23
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPL LAA+     +++ L+   AD++A      G + LH AA     +A   L++NGA
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDD--LGKSALHWAAAVNNVDAAVVLLKNGA 181

Query: 74  FLPDDIN--DSRFNPPLHY 90
               + +  ++R   PL  
Sbjct: 182 ----NKDMQNNREETPLFL 196

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 86.8 bits (216), Expect = 7e-22
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G T LHLAA+    +    LLE  AD + +     G TPLH A     +   + LI N A
Sbjct: 57  GETALHLAARYSRSDAAKRLLEASADANIQDN--MGRTPLHAAVSADAQGVFQILIRNRA 114

Query: 74  FLPDDIN--DSRFNPPLHY 90
               D++        PL  
Sbjct: 115 ---TDLDARMHDGTTPLIL 130

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 84.4 bits (210), Expect = 7e-21
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           +  TPL LAA+ G  E   VLL+  A+ D          P   A +    + VR L    
Sbjct: 189 REETPLFLAAREGSYETAKVLLDHFANRDITDH--MDRLPRDIAQERMHHDIVRLLDLEH 246

Query: 73  AFLPDDIND 81
                  + 
Sbjct: 247 H----HHHH 251

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 79.0 bits (196), Expect = 6e-19
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 26/106 (24%)

Query: 1  MDVNVAAWGPKSK-GVTPLHLAAQGG-------------HLEVMDVLLERGADIDARTKG 46
          MDVNV     +   G TPL +A+  G                V+   + +GA +      
Sbjct: 1  MDVNV-----RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN-QTD 54

Query: 47 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            G T LH AA+  + +A + L+E  A    D N  D+    PLH 
Sbjct: 55 RTGETALHLAARYSRSDAAKRLLEASA----DANIQDNMGRTPLHA 96

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 86.7 bits (216), Expect = 7e-23
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 14/92 (15%)

Query: 2  DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           +++            L  AA  G +E +  LLE GAD +A  +   G  P+        
Sbjct: 4  GIHMLG----GSSDAGLATAAARGQVETVRQLLEAGADPNALNRF--GRRPIQVMMMGS- 56

Query: 62 KEAVRFLIENGAFLPDDIN---DSRFNPPLHY 90
           +    L+ +GA    + N    +    P+H 
Sbjct: 57 AQVAELLLLHGA----EPNCADPATLTRPVHD 84

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.0 bits (209), Expect = 6e-22
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           + N A     +    P+H AA+ G L+ + VL   GA +D       G  P+  A ++  
Sbjct: 69  EPNCAD---PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW--GRLPVDLAEEQGH 123

Query: 62  KEAVRFLIENGA 73
           ++  R+L     
Sbjct: 124 RDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 4/38 (10%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGAD 39
            ++V      + G  P+ LA + GH ++   L     D
Sbjct: 103 RLDVC----DAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 88.3 bits (220), Expect = 7e-23
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
              L  A Q    +V ++L +    +D       G TPL+ A      E  + LI+ GA
Sbjct: 6  VGALLEAANQRDTKKVKEILQDTTYQVDEVDTE--GNTPLNIAVHNNDIEIAKALIDRGA 63

Query: 74 FLPDDIN--DSRFNPPLHY 90
              DIN  +S  + P  Y
Sbjct: 64 ----DINLQNSISDSPYLY 78

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 86.0 bits (214), Expect = 7e-22
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPL++A     +E+   L++RGADI+ +       +P   A  + + E + +++++  
Sbjct: 39  GNTPLNIAVHNNDIEIAKALIDRGADINLQNS--ISDSPYLYAGAQGRTEILAYMLKHAT 96

Query: 74  FLPDDIN--DSRFNPPLHY 90
               D+N  +      L  
Sbjct: 97  ---PDLNKHNRYGGNALIP 112

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 78.6 bits (195), Expect = 4e-19
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 14/85 (16%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERG-ADIDARTKGACGWTPLHTAAKERK-----KEAVRF 67
           G   L  AA+ GH++ + +LLE G  DID +     G+T L  A   R+     ++ V+ 
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQND--FGYTALIEAVGLREGNQLYQDIVKL 163

Query: 68  LIENGAFLPDDIN--DSRFNPPLHY 90
           L+ENGA    D +  D+     + Y
Sbjct: 164 LMENGA----DQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 69.0 bits (170), Expect = 2e-15
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 14  GVTPLHLAA-----QGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
           G T L  A         + +++ +L+E GAD   +     G T +  A ++   E  + L
Sbjct: 140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS--GRTAMDYANQKGYTEISKIL 197

Query: 69  IE 70
            +
Sbjct: 198 AQ 199

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 87.4 bits (218), Expect = 1e-22
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPL  +   G+ E+   LLE GA+++ R     G TPL  A+K  + E V+ L+E GA
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL--EGETPLIVASKYGRSEIVKKLLELGA 158

Query: 74  FLPDDIN--DSRFNPPLHY 90
               DI+  D         
Sbjct: 159 ----DISARDLTGLTAEAS 173

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 86.7 bits (216), Expect = 3e-22
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
             TPL +A   G    +D L+E    ++ +     G T L  A K  +      L+  G+
Sbjct: 35  NRTPLMVACMLGMENAIDKLVENFDKLEDKDI--EGSTALIWAVKNNRLGIAEKLLSKGS 92

Query: 74  FLPDDIN--DSRFNPPLHY 90
               ++N  D     PL +
Sbjct: 93  ----NVNTKDFSGKTPLMW 107

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 77.0 bits (191), Expect = 1e-18
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPL +A++ G  E++  LLE GADI AR     G T   +A    ++E ++   E   
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGADISARDL--TGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 64.3 bits (158), Expect = 9e-14
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 14/79 (17%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
          G     +  +    + +D L       + R       TPL  A     + A+  L+EN  
Sbjct: 8  GEIVEKIKDEKSINQNLDFL------RNYRDS--YNRTPLMVACMLGMENAIDKLVENFD 59

Query: 74 FLPDDIN--DSRFNPPLHY 90
               +   D   +  L +
Sbjct: 60 ----KLEDKDIEGSTALIW 74

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 89.5 bits (223), Expect = 1e-22
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           +VN      +  G TPLH A Q    +++++LL  GAD   R K   G TP   AA    
Sbjct: 30  NVNFQE---EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN--GATPFLLAAIAGS 84

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            + ++  +  GA    D+N  D         
Sbjct: 85  VKLLKLFLSKGA----DVNECDFYGFTAFME 111

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.8 bits (216), Expect = 2e-21
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
          +    L  A Q   ++++  LLE GA+++ + +   GWTPLH A +  +++ V  L+ +G
Sbjct: 4  EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE-EGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 73 AFLPDDIN--DSRFNPPLHY 90
          A    D          P   
Sbjct: 63 A----DPVLRKKNGATPFLL 78

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.5 bits (205), Expect = 6e-20
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 11/80 (13%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER-GADIDARTKGACGWTPLHTAAKER 60
           DVNV       +G TPL LA +  HL ++  LLE+   +I+       G T L  A + +
Sbjct: 211 DVNVRG----ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS--DGKTALLLAVELK 264

Query: 61  KKEAVRFLIENGAFLPDDIN 80
            K+    L + GA      +
Sbjct: 265 LKKIAELLCKRGA----STD 280

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.0 bits (201), Expect = 2e-19
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 19/100 (19%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK--------GACGWTPL 53
           DVN         G T    AA  G ++ +  L +RGA+++ R K           G T L
Sbjct: 97  DVNEC----DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

Query: 54  HTAAKERKKEAVRFLI-ENGAFLPDDIN--DSRFNPPLHY 90
             AA++   E ++ L+ E GA    D+N  D+     L +
Sbjct: 153 MDAAEKGHVEVLKILLDEMGA----DVNACDNMGRNALIH 188

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 76.7 bits (190), Expect = 7e-18
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 13/84 (15%)

Query: 14  GVTPLHLAAQGGH----LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
           G   L  A           +  +LL+ GAD++ R +   G TPL  A +++    V+ L+
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE--RGKTPLILAVEKKHLGLVQRLL 239

Query: 70  EN-GAFLPDDIN--DSRFNPPLHY 90
           E        +IN  DS     L  
Sbjct: 240 EQEHI----EINDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.5 bits (122), Expect = 2e-08
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDAR 43
            G T L LA +    ++ ++L +RGA  D  
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 88.0 bits (219), Expect = 2e-22
 Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 20/103 (19%)

Query: 4   NVAAWGPKSK---GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC-----------G 49
            +      S+   G T LH+A    ++ ++  LL RGA + AR  G+            G
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121

Query: 50  WTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
             PL  AA    +E VR LIE+GA    DI   DS  N  LH 
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGA----DIRAQDSLGNTVLHI 160

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDART---KGACGWTPLHTAAKERKKEAVRFLIE 70
           G T LH+AA   +LE   VL+E   ++       +   G T LH A   +    VR L+ 
Sbjct: 37  GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96

Query: 71  NGAFLPDDIN 80
            GA     ++
Sbjct: 97  RGA----SVS 102

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 79.6 bits (197), Expect = 3e-19
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 14/85 (16%)

Query: 14 GVTPLHLAAQGGHLE-VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
            +PL LAA+   ++ +  +L   G ++  R     G T LH AA     EA   L+E  
Sbjct: 3  WESPLLLAAKENDVQALSKLLKFEGCEVHQRGA--MGETALHIAALYDNLEAAMVLMEAA 60

Query: 73 AFLPDDINDSRFNP-------PLHY 90
               ++               LH 
Sbjct: 61 P----ELVFEPMTSELYEGQTALHI 81

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 79.2 bits (196), Expect = 5e-19
 Identities = 21/97 (21%), Positives = 29/97 (29%), Gaps = 18/97 (18%)

Query: 6   AAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAV 65
                   G  PL  AA  G  E++ +L+E GADI A+     G T LH    +  K   
Sbjct: 113 RPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS--LGNTVLHILILQPNKTFA 170

Query: 66  R----FLIENGAFLPDDINDSRFNP--------PLHY 90
                 L+          +              P   
Sbjct: 171 CQMYNLLLSYDG----GDHLKSLELVPNNQGLTPFKL 203

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 89.1 bits (222), Expect = 2e-22
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
              PLH AA     +++ +LL  G D         G T L+ A      + V+  ++   
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK--GNTALYYAVDSGNMQTVKLFVKKNW 119

Query: 74  FLPDDIN---DSRFNPPLHY 90
                +     + +    ++
Sbjct: 120 ----RLMFYGKTGWKTSFYH 135

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 87.2 bits (217), Expect = 1e-21
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW-TPLHTAAKERKKEAVRFLIEN 71
           KG T L+ A   G+++ + + +++   +    K   GW T  + A        V + +  
Sbjct: 94  KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK--TGWKTSFYHAVMLNDVSIVSYFLSE 151

Query: 72  GAFLPDDINDSRFNPPLHY 90
                   + +     +H 
Sbjct: 152 IP---STFDLAILLSCIHI 167

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 86.8 bits (216), Expect = 1e-21
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 14/91 (15%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           D   A       G +  + A    ++ ++  LL  GA  +          PLH AA    
Sbjct: 23  DTFKAD----VHGHSASYYAIADNNVRLVCTLLNAGALKNLLE----NEFPLHQAATLED 74

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
            + V+ L+ +G     D +  D + N  L+Y
Sbjct: 75  TKIVKILLFSGL----DDSQFDDKGNTALYY 101

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 85.3 bits (212), Expect = 4e-21
 Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 12/81 (14%)

Query: 11  KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP-LHTAAKERKKEAVRFLI 69
            +  ++ +H+  + GH+++M +LL+     +        + P +  A   +  E ++ L 
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL--LFIPDIKLAIDNKDIEMLQALF 215

Query: 70  ENGAFLPDDINDSRFNPPLHY 90
           +       +I           
Sbjct: 216 KYDI----NIYS-----ANLE 227

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 20/92 (21%)

Query: 2   DVNVAAWGPKSKGVTP-LHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
             N       S    P + LA     +E++  L +   +I          +         
Sbjct: 186 STNTNN----SLLFIPDIKLAIDNKDIEMLQALFKYDINIY---------SANLENVLLD 232

Query: 61  KKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
             E  + +IE       +        +  +  
Sbjct: 233 DAEIAKMIIEKHV----EYKSDSYTKDLDIVK 260

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 9/77 (11%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
          G+    +       + +        D         G +  + A  +     V  L+  GA
Sbjct: 1  GMDLSRINT--WKSKQL-KSFLSSKDTFKADV--HGHSASYYAIADNNVRLVCTLLNAGA 55

Query: 74 FLPDDINDSRFNPPLHY 90
                N      PLH 
Sbjct: 56 ----LKNLLENEFPLHQ 68

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 88.3 bits (219), Expect = 3e-22
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 3   VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA------------CGW 50
           VN +      KG T LH+A +  ++ ++ +L+E GAD+ A   G              G 
Sbjct: 90  VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE 149

Query: 51  TPLHTAAKERKKEAVRFLIENGAFLPD-DINDSRFNPPLHY 90
            PL  AA   +   V+FL++N     D    DS  N  LH 
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHA 190

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 69.4 bits (170), Expect = 4e-15
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 16/82 (19%)

Query: 11  KSKGVTPLHLA---AQGGHLEVMDVLLERGADIDARTKGA---------CGWTPLHTAAK 58
              G T L  A      G  + + +LL+     D+  +            G T LH A +
Sbjct: 51  PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE 110

Query: 59  ERKKEAVRFLIENGAFLPDDIN 80
            R    V  L+ENGA    D+ 
Sbjct: 111 RRNMTLVTLLVENGA----DVQ 128

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 63.3 bits (154), Expect = 7e-13
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 14/74 (18%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERG---ADIDARTKGACGWTPLHTAAKERKKEAVR---- 66
           G  PL LAA    L ++  LL+     ADI AR     G T LH   +            
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDS--VGNTVLHALVEVADNTVDNTKFV 205

Query: 67  -----FLIENGAFL 75
                 ++  GA L
Sbjct: 206 TSMYNEILILGAKL 219

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 62.5 bits (152), Expect = 1e-12
 Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 23/93 (24%)

Query: 12  SKGVTPLHLAAQGGHLEV---------MDVLLERGADI-----DARTKGACGWTPLHTAA 57
           S G T LH   +     V          + +L  GA +             G TPL  AA
Sbjct: 182 SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241

Query: 58  KERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 90
              K   + ++++         ++       H 
Sbjct: 242 SSGKIGVLAYILQREI------HE---PECRHA 265

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 20/100 (20%)

Query: 10  PKSKGVTPLHLAAQGGHLEVMDVLLE-------RGADIDARTKGACGWTPLHTA---AKE 59
           P+      +  A    + + ++ LL        R  D + +     G T L  A      
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFK-DPETGKTCLLKAMLNLHN 67

Query: 60  RKKEAVRFLIENGA-------FLPDDINDSRFN--PPLHY 90
            + + +  L++          F+     DS +     LH 
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHI 107

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.3 bits (141), Expect = 4e-11
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 9/47 (19%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKE 59
           KG+TPL LAA  G + V+  +L+R                 H AA  
Sbjct: 232 KGLTPLALAASSGKIGVLAYILQREIH---------EPECRHAAAHH 269

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 86.4 bits (215), Expect = 3e-22
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 11  KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
            S+  TP   AA+    + +  LLE   D+DA  +   G T L   A     + VR L E
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDEN--GRTALLFVAGLGSDKCVRLLAE 97

Query: 71  NGAFLPDDIN--DSRFNP-PLHY 90
            GA    D++  D R     LH 
Sbjct: 98  AGA----DLDHRDMRGGLTALHM 116

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 85.2 bits (212), Expect = 8e-22
 Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G T L   A  G  + + +L E GAD+D R     G T LH AA   + E V  L+E GA
Sbjct: 76  GRTALLFVAGLGSDKCVRLLAEAGADLDHRDM-RGGLTALHMAAGYVRPEVVEALVELGA 134

Query: 74  FLPDDIN--DSRFNPPLHY 90
               DI   D R    L  
Sbjct: 135 ----DIEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 82.9 bits (206), Expect = 5e-21
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G+T LH+AA     EV++ L+E GADI+   +   G T L  A +  K       ++ G 
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDER--GLTALELAREILKTTPKGNPMQFGR 167

Query: 74  FLPDDIN 80
                I 
Sbjct: 168 ----RIG 170

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 74.1 bits (183), Expect = 1e-17
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 12/81 (14%)

Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           +G     +  + GH           AD+ +        TP  TAA++  ++A+  L+E 
Sbjct: 12 GEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE-----YETPWWTAARKADEQALSQLLE- 65

Query: 72 GAFLPDDIN--DSRFNPPLHY 90
                D++  D      L +
Sbjct: 66 DR----DVDAVDENGRTALLF 82

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 19/58 (32%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           G+T L LA +          ++ G  I                     ++ +  L   
Sbjct: 143 GLTALELAREILKTTPKGNPMQFGRRIGL-------------------EKVINVLEGQ 181

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 84.5 bits (210), Expect = 9e-22
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
           + N A     +    P+H AA+ G L+ + VL   GA +D R     G  P+  A +   
Sbjct: 69  EPNCAD---PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW--GRLPVDLAEELGH 123

Query: 62  KEAVRFLIENGAFLPDDIN 80
           ++  R+L            
Sbjct: 124 RDVARYLRAAAG----GTR 138

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 81.4 bits (202), Expect = 1e-20
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 10/81 (12%)

Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
               L  AA  G +E +  LLE GA+ +A      G  P+              L+ +G
Sbjct: 11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSY--GRRPIQVMMM-GSARVAELLLLHG 67

Query: 73 AFLPDDIN---DSRFNPPLHY 90
          A    + N    +    P+H 
Sbjct: 68 A----EPNCADPATLTRPVHD 84

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 60.2 bits (147), Expect = 2e-12
 Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 11/64 (17%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
            ++V      + G  P+ LA + GH +V   L                       A E  
Sbjct: 103 RLDVRD----AWGRLPVDLAEELGHRDVARYLRAAAGGTRGS-------NHARIDAAEGP 151

Query: 62  KEAV 65
            +  
Sbjct: 152 SDIP 155

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 86.0 bits (214), Expect = 1e-21
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER--GADIDARTKGACGWTPLHTAAKE 59
           +VN+  +   S G TP H+A   G+LEV+  L +R    D++  T    G T LH A  +
Sbjct: 61  NVNLDDYPDDS-GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN--QGVTCLHLAVGK 117

Query: 60  RKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
           +  E  +FLIENGA     +   D     PLH 
Sbjct: 118 KWFEVSQFLIENGA----SVRIKDKFNQIPLHR 146

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.7 bits (203), Expect = 5e-20
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDAR-TKGACGWTPLHTAAKERKKEAVRFLIEN- 71
           G  PLH +      E+   LL +  +++        GWTP H A      E V+ L +  
Sbjct: 36  GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95

Query: 72  -GAFLPDDIN--DSRFNPPLHY 90
                  D+N   ++    LH 
Sbjct: 96  LKP----DLNKITNQGVTCLHL 113

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.0 bits (201), Expect = 7e-20
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERG-ADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
               PLH AA  G L+++++L   G + ++ + K   GWTPL  A  E   +A   L+E 
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK--QGWTPLFHALAEGHGDAAVLLVEK 196

Query: 72  -GAFLPDDIN--DSRFNPPLHY 90
            GA    + +  D++       
Sbjct: 197 YGA----EYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 79.8 bits (198), Expect = 2e-19
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 12/83 (14%)

Query: 14 GVTPLHLAAQGGHL-EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
             PLH A       +V ++L  + + +  + +   G  PLH +   +  E   FL+   
Sbjct: 2  SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQD--GRIPLHWSVSFQAHEITSFLLSKM 59

Query: 73 AFLPDDIN--DSRFNP---PLHY 90
               ++N  D   +    P H 
Sbjct: 60 E----NVNLDDYPDDSGWTPFHI 78

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.6 bits (169), Expect = 4e-15
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLER-GADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           G TPL  A   GH +   +L+E+ GA+ D       G      A     ++  +F + N
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK--GAKAEDVAL---NEQVKKFFLNN 227

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 86.1 bits (214), Expect = 1e-21
 Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G T L   A  G  + + +L E GAD+D R     G T LH AA   + E V  L+E GA
Sbjct: 77  GRTALLFVAGLGSDKCVRLLAEAGADLDHRDM-RGGLTALHMAAGYVRPEVVEALVELGA 135

Query: 74  FLPDDIN--DSRFNPPLHY 90
               DI   D R    L  
Sbjct: 136 ----DIEVEDERGLTALEL 150

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 84.6 bits (210), Expect = 4e-21
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 11  KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
            S+  TP   AA+    + +  LLE   D+DA  +   G T L   A     + VR L E
Sbjct: 42  VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDEN--GRTALLFVAGLGSDKCVRLLAE 98

Query: 71  NGAFLPDDIN--DSRFNP-PLHY 90
            GA    D++  D R     LH 
Sbjct: 99  AGA----DLDHRDMRGGLTALHM 117

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 82.7 bits (205), Expect = 3e-20
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G+T LH+AA     EV++ L+E GADI+   +   G T L  A +  K       ++ G 
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDER--GLTALELAREILKTTPKGNPMQFGR 168

Query: 74  FLPDDIN 80
                I 
Sbjct: 169 ----RIG 171

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 73.4 bits (181), Expect = 7e-17
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 12/81 (14%)

Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           +G     +  + GH           AD+ +        TP  TAA++  ++A+  L+E 
Sbjct: 13 GEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE-----YETPWWTAARKADEQALSQLLE- 66

Query: 72 GAFLPDDIN--DSRFNPPLHY 90
                D++  D      L +
Sbjct: 67 DR----DVDAVDENGRTALLF 83

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 68.4 bits (168), Expect = 6e-15
 Identities = 11/97 (11%), Positives = 21/97 (21%), Gaps = 24/97 (24%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC--------------------GWTPL 53
           G+T L LA +          ++ G  I                            G    
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVE 203

Query: 54  HTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 90
           +    +   +       + A    +     +   L Y
Sbjct: 204 YLVRWKDGGDCEWVKGVHVA----EDVAKDYEDGLEY 236

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 4/47 (8%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKE 59
           KG    +L       +   V     A+  A+         L  A  E
Sbjct: 198 KGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE----DGLEYAVAE 240

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 6/53 (11%), Positives = 10/53 (18%), Gaps = 5/53 (9%)

Query: 38 ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 90
            I        G        K+    +        A    D+    +  P   
Sbjct: 4  NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA----DVVS-EYETPWWT 51

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 86.4 bits (214), Expect = 2e-21
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA------------CGWTPLHTAAKER 60
           +G T LH+A +      +++L+E+GAD+ A+ +G              G  PL  AA   
Sbjct: 92  RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151

Query: 61  KKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRFQRE 107
           +   V +L ENG     D+   DSR N  LH   ++     E  +F  +
Sbjct: 152 QPHIVHYLTENGHK-QADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 67.9 bits (166), Expect = 1e-14
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 20/93 (21%)

Query: 12  SKGVTPLHLAAQGGH---------LEVMDVLLERGADIDARTKGAC-----GWTPLHTAA 57
           S+G T LH                 ++ D+LL + A +   T         G +PL  AA
Sbjct: 174 SRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233

Query: 58  KERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 90
           K  K    + +I            +  +   H+
Sbjct: 234 KTGKIGIFQHIIRREI----ADAAAHHH--HHH 260

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.0 bits (161), Expect = 6e-14
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 16/91 (17%)

Query: 2   DVNVAAWGPKSKGVTPLHLAA---QGGHLEVMDVLLERGADIDART---------KGACG 49
            +    +   S G T L  A      G  + + +LL+                      G
Sbjct: 34  RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRG 93

Query: 50  WTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
            T LH A + R K  V  L+E GA    D++
Sbjct: 94  QTALHIAIERRCKHYVELLVEKGA----DVH 120

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 51.7 bits (124), Expect = 7e-09
 Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 18/98 (18%)

Query: 11 KSKGVTPLHLAA----QGGHLEVMDVLLERGADIDAR--TKGACGWTPLHTAA---KERK 61
          K      L          G   ++  LL     +      + + G T L  A       +
Sbjct: 2  KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61

Query: 62 KEAVRFLIENGA-------FLPDDINDSRFNP--PLHY 90
           + +  L++          F+     D  +     LH 
Sbjct: 62 NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHI 99

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 83.6 bits (208), Expect = 2e-21
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
             NV      + G +P+H AA+ G L+ + VL+E GAD++       G  P+H A +E  
Sbjct: 60  SPNVQD----TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG--TGALPIHLAVQEGH 113

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
              V FL    +    D++  D+R   PL  
Sbjct: 114 TAVVSFLAA-ES----DLHRRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 75.5 bits (187), Expect = 3e-18
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 13 KGVTPLHLAAQGGHLEVMDVLLER-GADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
          +    L  AA  G ++ +  LL R     DA  +   G T L              L++ 
Sbjct: 1  RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNR--FGKTALQVMMFGS-TAIALELLKQ 57

Query: 72 GAFLPDDIN--DSRFNPPLHY 90
          GA      N  D+    P+H 
Sbjct: 58 GA----SPNVQDTSGTSPVHD 74

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 75.1 bits (186), Expect = 4e-18
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 2   DVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
           DVNV         G  P+HLA Q GH  V+  L    +D+  R     G TPL  A +  
Sbjct: 93  DVNV-----PDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDAR--GLTPLELALQRG 144

Query: 61  KKEAVRFLIE 70
            ++ V  L  
Sbjct: 145 AQDLVDILQG 154

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 87.3 bits (217), Expect = 2e-21
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 2   DVNVAAWGPKSK----GVTPLHLAAQGGHLEVMDVLL-ERGADIDARTKGACGWTPLHTA 56
            V+      K      G T LH AAQ  ++ ++  L+ E+G++ D + +   G TP+  A
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE--DGKTPIMLA 320

Query: 57  AKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
           A+E + E V +LI+ GA     +   D+  +     
Sbjct: 321 AQEGRIEVVMYLIQQGA----SVEAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 84.2 bits (209), Expect = 3e-20
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
            G TP+ LAAQ G +EV+  L+++GA ++A        T    A        V       
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT--DHTARQLAQANNHHNIVDIFDRCR 369

Query: 73  A 73
            
Sbjct: 370 P 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 80.8 bits (200), Expect = 6e-19
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN- 71
              TPL LA       ++  L++ GAD     K     + LH AA  R    + +++ + 
Sbjct: 165 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS--ERSALHQAAANRDFGMMVYMLNST 222

Query: 72  --GAFLPDDIN--DSRFNPPLHY 90
                   DI   D      L  
Sbjct: 223 KLKG----DIEELDRNGMTALMI 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 80.4 bits (199), Expect = 9e-19
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 16/90 (17%)

Query: 11  KSKGVTPLHLAAQGGHLEVMDVLL--------ERGADIDARTKGACGWTPLHTAAKERKK 62
                T LH  A     E  + L+          GAD++A        TPL  A   R++
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC--DENTPLMLAVLARRR 179

Query: 63  EAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
             V +L++ GA    D    +      LH 
Sbjct: 180 RLVAYLMKAGA----DPTIYNKSERSALHQ 205

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.5 bits (194), Expect = 4e-18
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 22/94 (23%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLE---RGADIDARTKGACGWTPLHTAAKERKKEAV---R 66
              + LH AA      +M  +L       DI+   +   G T L   A    ++ V   +
Sbjct: 198 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR--NGMTALMIVAHNEGRDQVASAK 255

Query: 67  FLIENGAFLPDDINDSRFNP----------PLHY 90
            L+E GA     ++                 LHY
Sbjct: 256 LLVEKGA----KVDYDGAARKDSEKYKGRTALHY 285

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.1 bits (188), Expect = 2e-17
 Identities = 13/78 (16%), Positives = 19/78 (24%), Gaps = 8/78 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
            + P       G+  + D                     LHT A          +     
Sbjct: 61  SLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEP--ESPIKLHTEAA-GSYAITEPITRESV 117

Query: 74  FLPDDINDSRFNP-PLHY 90
               +I D R N   LH+
Sbjct: 118 ----NIIDPRHNRTVLHW 131

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 71.9 bits (177), Expect = 9e-16
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 16/89 (17%)

Query: 14  GVTPLHLAAQGGHLEVMDV---LLERGADIDARTKGAC------GWTPLHTAAKERKKEA 64
           G+T L + A     + +     L+E+GA +D             G T LH AA+      
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294

Query: 65  VRFLI-ENGAFLPDDIN--DSRFNPPLHY 90
           V++L+ E G+    + +  D     P+  
Sbjct: 295 VKYLVGEKGS----NKDKQDEDGKTPIML 319

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           +    LH  A  G   + + +     +I          T LH  A     E    LI + 
Sbjct: 93  ESPIKLHTEAA-GSYAITEPITRESVNII---DPRHNRTVLHWIASNSSAEKSEDLIVHE 148

Query: 73  AFLPD----DIN--DSRFNPPLHY 90
           A        D+N  D   N PL  
Sbjct: 149 AKECIAAGADVNAMDCDENTPLML 172

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 9/79 (11%), Positives = 15/79 (18%), Gaps = 17/79 (21%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
               L  A+  G+++     L+                P              F   N  
Sbjct: 37  SQHSLLEASYDGYIKRQRNELQHY-----------SLYPNPQGYGNGNDFLGDFNHTNLQ 85

Query: 74  FLPDDIN--DSRFNPPLHY 90
                    +      LH 
Sbjct: 86  ----IPTEPEPESPIKLHT 100

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADID 41
              T   LA    H  ++D+      + +
Sbjct: 345 TDHTARQLAQANNHHNIVDIFDRCRPERE 373

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.5 bits (209), Expect = 5e-21
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           +   +LA  G   E+ + +L   +      +     T LH A      E V FL++ G 
Sbjct: 7  NIMICNLAYSGKLDELKERILADKSLATRTDQD--SRTALHWACSAGHTEIVEFLLQLGV 64

Query: 74 FLPDDIN--DSRFNPPLHY 90
               +N  D     PLH 
Sbjct: 65 ----PVNDKDDAGWSPLHI 79

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 82.6 bits (204), Expect = 3e-20
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
              T LH A   GH E+++ LL+ G  ++ +     GW+PLH AA     E V+ L+  G
Sbjct: 39  DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD--AGWSPLHIAASAGXDEIVKALLVKG 96

Query: 73  AFLPDDINDSRFNPPLHY 90
           A +  +  +     PLHY
Sbjct: 97  AHV--NAVNQNGCTPLHY 112

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 65.3 bits (159), Expect = 8e-14
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G +PLH+AA  G  E++  LL +GA ++A  +   G TPLH AA + + E    L+E GA
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN--GCTPLHYAASKNRHEIAVMLLEGGA 130

Query: 74  FLPDDINDSRFNPPLHY 90
               D  D      +H 
Sbjct: 131 NP--DAKDHYDATAMHR 145

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 62.2 bits (151), Expect = 1e-12
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
               T +H AA  G+L+++ +LL   A  + +     G TPLH A  E + E  +FL+  
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE--GNTPLHLACDEERVEEAKFLVTQ 194

Query: 72  GAFLPDDINDSRFNPPLHY 90
           GA +   I +     PL  
Sbjct: 195 GASI--YIENKEEKTPLQV 211

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           ++G TPLHLA     +E    L+ +GA I    K     TPL  A        +   +  
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE--EKTPLQVAKG--GLGLILKRLAE 225

Query: 72  GAFLPDDIN 80
           G     + +
Sbjct: 226 GE----EAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 61.0 bits (148), Expect = 3e-12
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
             G TPLH AA     E+  +LLE GA+ DA+       T +H AA +   + V  L+  
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH--YDATAMHRAAAKGNLKMVHILLFY 161

Query: 72  GAFLPDDINDSRFNPPLHYC 91
            A    +I D+  N PLH  
Sbjct: 162 KAST--NIQDTEGNTPLHLA 179

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 82.5 bits (204), Expect = 4e-20
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC-----------GWTPLHTAAKERK 61
           +G + LH+A +   L+ + +L+E GAD+  R  G             G  PL  AA  ++
Sbjct: 89  QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148

Query: 62  KEAVRFLIENGAFLPD-DINDSRFNPPLHYC 91
            + V +L+EN       +  DS  N  LH  
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHAL 179

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 75.2 bits (185), Expect = 2e-17
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 6   AAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAV 65
                 S   + L +    G L++   L       +       G TPL  AAKE K E  
Sbjct: 180 VMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ--GLTPLKLAAKEGKIEIF 237

Query: 66  RFLIENGA 73
           R +++   
Sbjct: 238 RHILQREF 245

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 65.6 bits (160), Expect = 8e-14
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 23/96 (23%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERG---ADIDARTKGACGWTPLH---------------- 54
           G  PL LAA     +V+  LLE     A ++A      G T LH                
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSL--GNTVLHALVMIADNSPENSALV 193

Query: 55  TAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 90
               +   +    L         +I++ +   PL  
Sbjct: 194 IHMYDGLLQMGARLCPTVQLE--EISNHQGLTPLKL 227

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 16/81 (19%)

Query: 12  SKGVTPLHLAA---QGGHLEVMDVLLERGAD---------IDARTKGACGWTPLHTAAKE 59
           S G T L  A    Q G    +  LL+   D              +   G + LH A ++
Sbjct: 41  STGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK 100

Query: 60  RKKEAVRFLIENGAFLPDDIN 80
           R  + V+ L+ENGA    D++
Sbjct: 101 RSLQCVKLLVENGA----DVH 117

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDA 42
           +G+TPL LAA+ G +E+   +L+R     A
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHILQREFSGAA 249

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 18/93 (19%)

Query: 16 TPLHLAAQGGHLEVMDVLLE------RGADIDARTKGACGWTPLHTAAKERK---KEAVR 66
            L      G  E +  LLE      +     A T+G+ G T L  A    +      + 
Sbjct: 4  DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 67 FLIENGAFLPD-------DINDSRFN--PPLHY 90
           L++      +          D  +     LH 
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHI 96

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 13/86 (15%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G T LH AA  G+ +++ +LL +GA  D R            A        ++      A
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRNI--EKKLAFDMATNAACASLLKKKQGTDA 197

Query: 74  ---------FLPDDINDSRFNPPLHY 90
                    +L D+ +D       H+
Sbjct: 198 VRTLSNAEDYLDDEDSD--LEHHHHH 221

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 79.2 bits (196), Expect = 4e-19
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI-ENG 72
              PLH AA+ G+L  +   L+    ++   K   G T L+ A     K+ V  L  +  
Sbjct: 73  IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA--GSTALYWACHGGHKDIVEMLFTQPN 130

Query: 73  AFLPDDIN--DSRFNPPLHY 90
                ++N  +   +  LH 
Sbjct: 131 I----ELNQQNKLGDTALHA 146

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 13/79 (16%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
             T        G   ++         +  + +      PLH AAK      +R  ++N  
Sbjct: 45  SDTNWWKGTSKGRTGLI-----PSNYVAEQAE--SIDNPLHEAAKRGNLSWLRECLDNRV 97

Query: 74  FLPDDIN--DSRFNPPLHY 90
                +N  D   +  L++
Sbjct: 98  ----GVNGLDKAGSTALYW 112

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.9 bits (187), Expect = 3e-18
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 14/85 (16%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKE------RKKEAVRF 67
               L         ++   L+ +GADI +RTK   G T      +          E  + 
Sbjct: 42  LYDVLRNNNDEARYKISMFLINKGADIKSRTKE--GTTLFFPLFQGGGNDITGTTELCKI 99

Query: 68  LIENGAFLPDDIN--DSRFNPPLHY 90
            +E GA    DI      +   +  
Sbjct: 100 FLEKGA----DITALYKPYKIVVFK 120

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 72.8 bits (179), Expect = 6e-17
 Identities = 8/75 (10%), Positives = 22/75 (29%), Gaps = 13/75 (17%)

Query: 13  KGVTPLHLAAQGGHLEVMD-------VLLERGADIDARTKGACGWTPLHTAAKERKKEAV 65
                +        ++  +       +  + G  +  + K   G T L    + +K  A+
Sbjct: 113 PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK--WGLTALEFVKRCQKPIAL 170

Query: 66  RFLIENGAFLPDDIN 80
           + + +         N
Sbjct: 171 KMMEDYIK----KYN 181

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 69.7 bits (171), Expect = 8e-16
 Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 25/104 (24%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGH------LEVMDVLLERGADIDARTKGACGWTPLHT 55
           D+         +G T      QGG        E+  + LE+GADI A  K       +  
Sbjct: 67  DIKSR----TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP--YKIVVFK 120

Query: 56  AAKERKKEAVR-------FLIENGAFLPDDIN--DSRFNPPLHY 90
                  +             ++G      +   D      L +
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGL----QLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 69.3 bits (170), Expect = 1e-15
 Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 7/78 (8%)

Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKG-ACGWTPLHTAAKERKKEAVRFLIENGAF 74
            +  AA  G  E    L E+G +           +  L     E + +   FLI  GA 
Sbjct: 8  RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA- 66

Query: 75 LPDDIN--DSRFNPPLHY 90
             DI             
Sbjct: 67 ---DIKSRTKEGTTLFFP 81

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 3/42 (7%), Positives = 13/42 (30%), Gaps = 4/42 (9%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDAR 43
            + +        G+T L    +      + ++ +     + +
Sbjct: 146 QLLIKD----KWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 3/42 (7%)

Query: 49 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 90
           +  +  AA     E    L E G    +D      +  L+ 
Sbjct: 6  EYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYD 44

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 77.7 bits (191), Expect = 7e-18
 Identities = 14/79 (17%), Positives = 24/79 (30%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           +      LAA+ GHL V++ L E           A  +     AA+      +  L E  
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 186

Query: 73  AFLPDDINDSRFNPPLHYC 91
                 +  +       + 
Sbjct: 187 PTEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 67.7 bits (165), Expect = 3e-14
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER- 60
              +A    +++      LAA+ GHL V++ L E           A  +     AA  R 
Sbjct: 153 TEIMAM--IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210

Query: 61  KKEAVRFLIENGA 73
               + FL++   
Sbjct: 211 HHNVINFLLDCPV 223

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.6 bits (139), Expect = 9e-11
 Identities = 12/81 (14%), Positives = 20/81 (24%), Gaps = 5/81 (6%)

Query: 13  KGVTPLHLAAQGGHLEVMDV---LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
           K      +AA  G    +D    LL     +      A  +     AA+      +  L 
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKV--IQAENYQAFRLAAENGHLHVLNRLC 148

Query: 70  ENGAFLPDDINDSRFNPPLHY 90
           E        +  +        
Sbjct: 149 ELAPTEIMAMIQAENYHAFRL 169

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.7 bits (134), Expect = 4e-10
 Identities = 8/78 (10%), Positives = 21/78 (26%), Gaps = 10/78 (12%)

Query: 4   NVAAWGPKSKGVTPLHLAAQGGHLEVMDVL--------LERGADIDARTKGACGWTPLHT 55
           ++       +G   L    +     ++D +        ++  A              L  
Sbjct: 268 DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD--ANELLRL 325

Query: 56  AAKERKKEAVRFLIENGA 73
           A +   + A   L+   +
Sbjct: 326 ALRLGNQGACALLLSIPS 343

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.0 bits (132), Expect = 8e-10
 Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 5/61 (8%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
                L LA + G+     +LL   + +             +      + +     +E+ 
Sbjct: 318 DANELLRLALRLGNQGACALLLSIPSVLALTKA-----NNYYINETGGRLDLRAVALEHH 372

Query: 73  A 73
            
Sbjct: 373 H 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 11  KSKGVTPLHLAA-QGGHLEVMDVLLERGADIDARTKGACGWTPL--------HTAAKERK 61
           +++       AA   GH  V++ LL+    +         +           H    +  
Sbjct: 195 QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 254

Query: 62  KEAVRFLIENGAF 74
            +A +    +G F
Sbjct: 255 HDAFKLSNPDGVF 267

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.1 bits (166), Expect = 2e-14
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 10/83 (12%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER---KKEAVRFLI 69
            G TPLH      +LE++  L++ G++         G + L  A K            L+
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN--MGESCLVKAVKSVNNYDSGTFEALL 187

Query: 70  ENGAFLPDDIN--DSRFNPPLHY 90
           +        +   DS     LH+
Sbjct: 188 DYLY---PCLILEDSMNRTILHH 207

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 60.0 bits (145), Expect = 1e-11
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAA 57
           S G T L++AA+ G++ ++D LL+ GAD     K   G  P+   A
Sbjct: 281 SNGDTCLNIAARLGNISIVDALLDYGADPFIANK--SGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.9 bits (129), Expect = 2e-09
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 2   DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
               +    K       +   +   LE +D+       ++A+     G T L+ AA+   
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN--GDTCLNIAARLGN 295

Query: 62  KEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
              V  L++ GA    D    +     P+ +
Sbjct: 296 ISIVDALLDYGA----DPFIANKSGLRPVDF 322

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 52.0 bits (124), Expect = 8e-09
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 19  HLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDD 78
           H++      EV D       +++       G TPLH        E V+ L+++G+    +
Sbjct: 102 HVSFDSLLQEVNDAFPNTQLNLNIPVD-EHGNTPLHWLTSIANLELVKHLVKHGS----N 156

Query: 79  IN--DSRFNPPLHY 90
               D+     L  
Sbjct: 157 RLYGDNMGESCLVK 170

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 10/70 (14%)

Query: 12  SKGVTPLHLAAQGGHL----EVMDVLLERGADIDARTKGACGWTPLH----TAAKERKKE 63
           + G + L  A +  +         +L      +          T LH    T+       
Sbjct: 162 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS--MNRTILHHIIITSGMTGCSA 219

Query: 64  AVRFLIENGA 73
           A ++ ++   
Sbjct: 220 AAKYYLDILM 229

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.2 bits (135), Expect = 2e-10
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 12  SKGVTPLHLAAQGG---HLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
               T LHLA +      L ++D L++   ++D +T    G T LH        E ++ L
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK--GSTALHYCCLTDNAECLKLL 224

Query: 69  IENGAFLPDDINDSRFNPPLHYC 91
           +   A    +I +     PL   
Sbjct: 225 LRGKA--SIEIANESGETPLDIA 245

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.7 bits (126), Expect = 4e-09
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
            KG T LH      + E + +LL   A I+   +   G TPL  A + + +     L +
Sbjct: 203 GKGSTALHYCCLTDNAECLKLLLRGKASIEIANES--GETPLDIAKRLKHEHCEELLTQ 259

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 54.8 bits (131), Expect = 1e-09
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 10  PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
                 TPL  A     L   + LL+ GA+++       G  PLH A            +
Sbjct: 231 GGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA--GRGPLHHATILGHTGLACLFL 288

Query: 70  ENGAFLPDDINDSRFNPPLHY 90
           + GA       DS    PL  
Sbjct: 289 KRGA--DLGARDSEGRDPLTI 307

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.9 bits (108), Expect = 9e-07
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 10  PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
             S G  PLH A   GH  +  + L+RGAD+ AR     G  PL  A +    + V  L
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE--GRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 8   WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 67
            G    G      +     L  M   L  GAD++    G    TPL  A       A  F
Sbjct: 194 LGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF 253

Query: 68  LIENGAFLPDDINDSRFNPPLHYC 91
           L++NGA +  +  DS    PLH+ 
Sbjct: 254 LLQNGANV--NQADSAGRGPLHHA 275

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 11  KSKGVTPLHLA---AQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 67
           ++     LHLA   A    L ++D +++ G  +DA+   A G T LH AA   + + ++ 
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA--ADGNTALHYAALYNQPDCLKL 225

Query: 68  LIENGAFLPDDINDSRFNPPLHYCPSLE 95
           L++  A       +      L       
Sbjct: 226 LLKGRA--LVGTVNEAGETALDIARKKH 251

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.9 bits (124), Expect = 7e-09
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
           + G T LH AA     + + +LL+  A +    +   G T L  A K+  KE    L +
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA--GETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.9 bits (124), Expect = 7e-09
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 2   DVNVAAWGP--KSKGVTPLHLA---AQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA 56
           D      GP  ++     LHLA   A    L ++D +++ G  +DA+     G T LH A
Sbjct: 176 DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD--GNTALHYA 233

Query: 57  AKERKKEAVRFLIENGA 73
           A   + + ++ L++  A
Sbjct: 234 ALYNQPDCLKLLLKGRA 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.92
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.87
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.86
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.86
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.86
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.85
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.85
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.85
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.85
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.85
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.85
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.85
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.85
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.85
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.85
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.85
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.84
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.84
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.84
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.84
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.84
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.84
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.84
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.83
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.83
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.83
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.83
2etb_A	256	Transient receptor potential cation channel subfam	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
2pnn_A	273	Transient receptor potential cation channel subfa	99.83
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.83
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.83
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.83
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.83
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.83
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.82
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.82
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.82
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.82
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.82
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.82
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.82
2rfa_A	232	Transient receptor potential cation channel subfa	99.82
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.82
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.81
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.81
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.81
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.81
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.81
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.81
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.81
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.81
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.81
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.8
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.8
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.8
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.8
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.8
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.8
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.8
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.8
2pnn_A	273	Transient receptor potential cation channel subfa	99.8
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.8
2rfa_A	232	Transient receptor potential cation channel subfa	99.8
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.8
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.79
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.79
2etb_A	256	Transient receptor potential cation channel subfam	99.79
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.79
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.79
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.78
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.78
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.78
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.78
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.77
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.77
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.77
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.76
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.76
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.75
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.72
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.72
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.72
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.71
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.71
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.69
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.68
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.68
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.65
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.62
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.57
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.51
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.47

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.92  E-value=7.3e-25  Score=145.89  Aligned_cols=127  Identities=33%  Similarity=0.445  Sum_probs=99.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|.+|.||||+|+..++.++++.|++.|++++.++..  |+||||+|+..|+.+++++|+++|+++  +.+|..|+||||
T Consensus        33 ~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~--g~TpLh~A~~~g~~~~v~~Ll~~gadv--n~~d~~G~TpLh  108 (169)
T 4gpm_A           33 SDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD--GRTPLHHAAENGHKEVVKLLISKGADV--NAKDSDGRTPLH  108 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccC--CCCHHHHHHHcCCHHHHHHHHHCcCCC--CCCCCCCCCHHH
Confidence            4899999999999999999999999999999999887  999999999999999999999999988  889999999999


Q ss_pred             ccccchhhHHHHHHHHHHhhcCCCc-cCCchhhhHHHHHHhhhhhHHHhhhcCC
Q 031810           90 YCPSLEWAYEEMMRFQRESFSAGET-SYSSEKLNALSRLLVHMMPLLWLDLASD  142 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (152)
                      +|+  ..++.+++++|.+.+.+... ...+......+....+...+.++...+.
T Consensus       109 ~A~--~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A          109 HAA--ENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             HHH--HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             HHH--HcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            998  44457899999888765432 2233333333334445555555555444

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.91  E-value=6.8e-24  Score=141.21  Aligned_cols=98  Identities=39%  Similarity=0.582  Sum_probs=87.8

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +.+|.+|+||||+|+..|+.+++++|++.|++++.++..  |+||||+|+..|+.+++++|+++|+++  +.+|..|+||
T Consensus        64 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~--G~TpLh~A~~~g~~~~v~~Ll~~gad~--~~~d~~G~Tp  139 (169)
T 4gpm_A           64 NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD--GRTPLHHAAENGHKEVVKLLISKGADV--NTSDSDGRTP  139 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCH
T ss_pred             hhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCCH
Confidence            335899999999999999999999999999999999988  999999999999999999999999988  8899999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      ||+|+  ..++.+++++|.+.+.+
T Consensus       140 L~~A~--~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A          140 LDLAR--EHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHH--HTTCHHHHHHHHTC---
T ss_pred             HHHHH--HcCCHHHHHHHHHCCCC
Confidence            99998  44557899999987754

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=1.2e-23  Score=126.56  Aligned_cols=92  Identities=43%  Similarity=0.657  Sum_probs=83.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 031810           13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP   92 (152)
Q Consensus        13 ~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~   92 (152)
                      +|+||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +.+|..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHH
Confidence            4899999999999999999999999999999888  999999999999999999999999988  889999999999998


Q ss_pred             cchhhHHHHHHHHHHhhc
Q 031810           93 SLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        93 ~~~~~~~~~~~~l~~~~~  110 (152)
                      .  .++.+++++|.+.+.
T Consensus        77 ~--~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           77 R--NGHLEVVKLLLEAGA   92 (93)
T ss_dssp             H--TTCHHHHHHHHHTTC
T ss_pred             H--cCCHHHHHHHHHcCC
Confidence            4  445789999887653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=4.3e-22  Score=127.56  Aligned_cols=95  Identities=27%  Similarity=0.282  Sum_probs=73.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      ...|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +..+..|.||||+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~   86 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEY--GLTPLYLATAHGHLEIVEVLLKNGADV--NAVDAIGFTPLHL   86 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CcCCCCCCCHHHH
Confidence            455778888888888888888888888888877766  888888888888888888888888876  7777888888888


Q ss_pred             cccchhhHHHHHHHHHHhhcC
Q 031810           91 CPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |+  ..++.+++++|.+.+..
T Consensus        87 A~--~~~~~~~v~~Ll~~g~~  105 (136)
T 2jab_A           87 AA--FIGHLEIAEVLLKHGAD  105 (136)
T ss_dssp             HH--HHTCHHHHHHHHHTTCC
T ss_pred             HH--HcCCHHHHHHHHHcCCC
Confidence            87  34446777777776544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.87  E-value=4e-22  Score=127.72  Aligned_cols=95  Identities=21%  Similarity=0.273  Sum_probs=87.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCC-CCCcc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSR-FNPPL   88 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~-g~tpl   88 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+. ++.+++++|+++|+++  +.++.. |.|||
T Consensus         8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~-~~~~~v~~Ll~~g~~~--~~~~~~~g~t~L   82 (136)
T 1d9s_A            8 LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRF--GRRPIQVMMM-GSAQVAELLLLHGAEP--NCADPATLTRPV   82 (136)
T ss_dssp             CCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCTTTTTSTT-SCHHHHHHHHHHTCCS--SCCBTTTTBCHH
T ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCC--CCCHHHHHHc-CCHHHHHHHHHCCCCC--CCcCCCCCCCHH
Confidence            4889999999999999999999999999999998887  9999999999 9999999999999988  889999 99999


Q ss_pred             cccccchhhHHHHHHHHHHhhcC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |+|+  ..++.+++++|.+.+..
T Consensus        83 ~~A~--~~~~~~~v~~Ll~~ga~  103 (136)
T 1d9s_A           83 HDAA--REGFLDTLVVLHRAGAR  103 (136)
T ss_dssp             HHHH--HHTCHHHHHHHHHTCCC
T ss_pred             HHHH--HcCCHHHHHHHHHcCCC
Confidence            9999  44557899999987655

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.86  E-value=2.7e-21  Score=129.04  Aligned_cols=97  Identities=29%  Similarity=0.453  Sum_probs=85.3

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +.++..|.|||
T Consensus        34 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~d~~g~t~L  109 (179)
T 3f6q_A           34 QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG--DDTPLHLAASHGHRDIVQKLLQYKADI--NAVNEHGNVPL  109 (179)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHH
T ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHH
Confidence            35888999999999999999999999999999988887  999999999999999999999999987  88899999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |+|+.  .++.+++++|.+.+..
T Consensus       110 ~~A~~--~~~~~~v~~Ll~~ga~  130 (179)
T 3f6q_A          110 HYACF--WGQDQVAEDLVANGAL  130 (179)
T ss_dssp             HHHHH--TTCHHHHHHHHHTTCC
T ss_pred             HHHHH--cCCHHHHHHHHHCCCC
Confidence            99984  3447888888887655

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=1.8e-21  Score=124.69  Aligned_cols=96  Identities=24%  Similarity=0.474  Sum_probs=87.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +.++..|.||||
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~   81 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHA--GWTPLHEACNHGHLKVVELLLQHKALV--NTTGYQNDSPLH   81 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCGGGCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCcc--cCcCCCCCCHHH
Confidence            4889999999999999999999999999999998887  999999999999999999999999988  889999999999


Q ss_pred             ccccchhhHHHHHHHHHHhhcC
Q 031810           90 YCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      +|+.  .++.+++++|.+.+..
T Consensus        82 ~A~~--~~~~~~v~~Ll~~ga~  101 (137)
T 3c5r_A           82 DAAK--NGHVDIVKLLLSYGAS  101 (137)
T ss_dssp             HHHH--TTCHHHHHHHHHTTCC
T ss_pred             HHHH--cCCHHHHHHHHHcCCC
Confidence            9984  4457899999887654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=1.6e-21  Score=124.84  Aligned_cols=95  Identities=26%  Similarity=0.369  Sum_probs=83.3

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +.+|..|.|||
T Consensus        38 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl  113 (137)
T 3c5r_A           38 VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ--NDSPLHDAAKNGHVDIVKLLLSYGASR--NAVNIFGLRPV  113 (137)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGG--GCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCGG
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHH
Confidence            35889999999999999999999999999999999888  999999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHhh
Q 031810           89 HYCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~  109 (152)
                      ++|+  ..+..++++++.+..
T Consensus       114 ~~A~--~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A          114 DYTD--DESMKSLLLLPEKNE  132 (137)
T ss_dssp             GGCC--CHHHHHHHSCC----
T ss_pred             HHHh--hccHHHHHhhccccc
Confidence            9998  555567776665543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.86  E-value=9.5e-21  Score=126.40  Aligned_cols=100  Identities=27%  Similarity=0.266  Sum_probs=91.6

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +..+..|.|||
T Consensus        67 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl  142 (179)
T 3f6q_A           67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH--GNVPLHYACFWGQDQVAEDLVANGALV--SICNKYGEMPV  142 (179)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCS--SBCCTTSCCGG
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCc--chhccCCCCcH
Confidence            34889999999999999999999999999999999887  999999999999999999999999988  89999999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcCCCc
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSAGET  114 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~~~~  114 (152)
                      ++|+  .....+++++|.+.+.....
T Consensus       143 ~~A~--~~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          143 DKAK--APLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             GGSC--HHHHHHHHHHHHHTTCCCSC
T ss_pred             HHHH--HHHHHHHHHHHHHhhcCccc
Confidence            9998  56668899999998876543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=2.5e-21  Score=121.86  Aligned_cols=95  Identities=22%  Similarity=0.274  Sum_probs=80.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      +..|.||||+|+..|+.++++.|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +.+|..|.||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG--GRKPLHYAADCGQLEILEFLLLKGADI--NAPDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTT--SSCHHHHHHHTTCHHHHHHHHTTTCCT--TCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCC--CCcHHHHHHHcCCHHHHHHHHHcCCCC--CcCCCCCCCHHHH
Confidence            567889999999999999999999999999888877  899999999999999999999999987  8889999999999


Q ss_pred             cccchhhHHHHHHHHHHhhcC
Q 031810           91 CPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |+  ..++.+++++|.+.+..
T Consensus        80 A~--~~~~~~~v~~Ll~~ga~   98 (123)
T 3aaa_C           80 AV--YEGHVSCVKLLLSKGAD   98 (123)
T ss_dssp             HH--HHTCHHHHHHHHHTTCC
T ss_pred             HH--HcCCHHHHHHHHHcCCC
Confidence            98  44457888888887654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.86  E-value=3.6e-21  Score=126.96  Aligned_cols=99  Identities=26%  Similarity=0.308  Sum_probs=88.2

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +.+|..|.||||+|+..|+.+++++|++.|++++..+..  |.||||+|+..++.+++++|++.|+++  +..+..|.||
T Consensus        30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~  105 (167)
T 3v31_A           30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG--RESALSLACSKGYTDIVKMLLDCGVDV--NEYDWNGGTP  105 (167)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHHTCHHHHHHHHHHTCCT--TCCCTTSCCH
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC--CCcHHHHHHHcCCHHHHHHHHHCCCCC--CcCCCCCCCH
Confidence            335889999999999999999999999999999988877  999999999999999999999999988  8899999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcCC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      ||+|+.  .+..+++++|.+.+...
T Consensus       106 L~~A~~--~~~~~~v~~Ll~~g~~~  128 (167)
T 3v31_A          106 LLYAVH--GNHVKCVKMLLESGADP  128 (167)
T ss_dssp             HHHHHH--TTCHHHHHHHHHTTCCT
T ss_pred             HHHHHH--cCCHHHHHHHHHcCCCC
Confidence            999984  44578999998876553

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.86  E-value=8e-21  Score=125.73  Aligned_cols=97  Identities=38%  Similarity=0.539  Sum_probs=86.6

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +.++..|.|||
T Consensus        42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L  117 (169)
T 2y1l_E           42 AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA--GMTPLRLAALFGHLEIVEVLLKNGADV--NANDMEGHTPL  117 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHH
Confidence            34888999999999999999999999999999988887  999999999999999999999999988  88899999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |+|+.  .++.+++++|.+.+..
T Consensus       118 ~~A~~--~~~~~~v~~Ll~~g~~  138 (169)
T 2y1l_E          118 HLAAM--FGHLEIVEVLLKNGAD  138 (169)
T ss_dssp             HHHHH--TTCHHHHHHHHHTTCC
T ss_pred             HHHHH--cCCHHHHHHHHHcCCC
Confidence            99984  4457899999887655

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.86  E-value=1e-21  Score=139.41  Aligned_cols=81  Identities=32%  Similarity=0.474  Sum_probs=66.5

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..|+.+++++|+++|+++  +.+|..|+|||
T Consensus       147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~--g~t~Lh~A~~~g~~~~v~~Ll~~Gad~--~~~d~~G~TpL  222 (269)
T 4b93_B          147 KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK--GNTALHEAVIEKHVFVVELLLLHGASV--QVLNKRQRTAV  222 (269)
T ss_dssp             CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTT--SCBHHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTSCCSG
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccC--CCcHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHH
Confidence            34778888888888888888888888888888887776  888888888888888888888888877  77888888888


Q ss_pred             ccccc
Q 031810           89 HYCPS   93 (152)
Q Consensus        89 ~~a~~   93 (152)
                      |+|+.
T Consensus       223 ~~A~~  227 (269)
T 4b93_B          223 DCAEQ  227 (269)
T ss_dssp             GGSCT
T ss_pred             HHHHh
Confidence            88873

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=9.8e-22  Score=122.34  Aligned_cols=96  Identities=36%  Similarity=0.524  Sum_probs=88.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|.+|.||||+|+..|+.++++.|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +.++..|.||||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~d~~g~tpl~   80 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLLAKGADV--NARSKDGNTPEH   80 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSS--SCCTTHHHHTTTCHHHHHHHTTTTCCT--TCCCTTCCCTTH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCcHHHHHHHHHcCCCC--cccCCCCCCHHH
Confidence            5889999999999999999999999999999998887  999999999999999999999999988  889999999999


Q ss_pred             ccccchhhHHHHHHHHHHhhcC
Q 031810           90 YCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      +|+..  ++.+++++|.+.+.+
T Consensus        81 ~A~~~--~~~~~~~~Ll~~ga~  100 (115)
T 2l6b_A           81 LAKKN--GHHEIVKLLDAKGAD  100 (115)
T ss_dssp             HHHTT--TCHHHHHHHHTTSSS
T ss_pred             HHHHC--CCHHHHHHHHHcCCC
Confidence            99844  457899999987655

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=3.5e-21  Score=137.30  Aligned_cols=97  Identities=23%  Similarity=0.361  Sum_probs=89.0

Q ss_pred             CCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCC
Q 031810            9 GPKSKGVTPLHLAAQG---GHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFN   85 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~---g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~   85 (152)
                      ..|..|.||||+|+..   |+.+++++|++.|++++..+..  |+||||+|+..|+.+++++|+++|+++  +.+|..|.
T Consensus       164 ~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~--g~TpLh~A~~~g~~~~v~~Ll~~gad~--~~~d~~g~  239 (278)
T 1dcq_A          164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK--GSTALHYCCLTDNAECLKLLLRGKASI--EIANESGE  239 (278)
T ss_dssp             SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSC
T ss_pred             ccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCccCCCC
Confidence            3478899999999998   8999999999999999999988  999999999999999999999999988  89999999


Q ss_pred             CcccccccchhhHHHHHHHHHHhhcC
Q 031810           86 PPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        86 tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      ||||+|+.  .++.+++++|.+.+..
T Consensus       240 tpL~~A~~--~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          240 TPLDIAKR--LKHEHCEELLTQALSG  263 (278)
T ss_dssp             CHHHHHHH--TTCHHHHHHHHHHHTT
T ss_pred             CHHHHHHH--cCCHHHHHHHHHcCCC
Confidence            99999984  4457899999988765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.86  E-value=4.8e-21  Score=125.60  Aligned_cols=98  Identities=26%  Similarity=0.342  Sum_probs=88.4

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +.+|..|.||||+|+. |+.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +.++..|.||
T Consensus        32 ~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~  106 (162)
T 1ihb_A           32 NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRT--GFAVIHDAARAGFLDTLQTLLEFQADV--NIEDNEGNLP  106 (162)
T ss_dssp             TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCH
T ss_pred             cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCH
Confidence            3458899999999999 9999999999999999998887  999999999999999999999999988  8899999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcCC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      ||+|+  ..++.+++++|.+.+...
T Consensus       107 L~~A~--~~~~~~~v~~Ll~~g~~~  129 (162)
T 1ihb_A          107 LHLAA--KEGHLRVVEFLVKHTASN  129 (162)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHSCCC
T ss_pred             HHHHH--HcCCHHHHHHHHHccCCC
Confidence            99998  444578999999887764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.85  E-value=3.8e-21  Score=127.41  Aligned_cols=98  Identities=26%  Similarity=0.250  Sum_probs=88.3

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +..+..|.|||
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L  106 (172)
T 3v30_A           31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE--RESALSLASTGGYTDIVGLLLERDVDI--NIYDWNGGTPL  106 (172)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHTTTCCT--TCCCTTSCCHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhccc--CCCHHHHHHHCCCHHHHHHHHHcCCCC--CCCCCCCCCHH
Confidence            35889999999999999999999999999999998887  999999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcCC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |+|+.  .+..+++++|.+.+...
T Consensus       107 ~~A~~--~~~~~~v~~Ll~~ga~~  128 (172)
T 3v30_A          107 LYAVR--GNHVKCVEALLARGADL  128 (172)
T ss_dssp             HHHHH--TTCHHHHHHHHHTTCCT
T ss_pred             HHHHH--cCCHHHHHHHHHcCCCc
Confidence            99984  44578999998876553

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.85  E-value=6.7e-21  Score=125.42  Aligned_cols=99  Identities=29%  Similarity=0.442  Sum_probs=87.8

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +..+..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +..+..|.||
T Consensus        36 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~  111 (165)
T 3twr_A           36 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG--GLVPLHNACSYGHYEVAELLVKHGAVV--NVADLWKFTP  111 (165)
T ss_dssp             CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCH
T ss_pred             cccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCC--CCCHHHHHHHcCcHHHHHHHHhCCCCC--CCcCCCCCCH
Confidence            345788999999999999999999999999999998887  999999999999999999999999988  8899999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcCC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      ||+|+.  .++.+++++|.+.+...
T Consensus       112 L~~A~~--~~~~~~v~~Ll~~ga~~  134 (165)
T 3twr_A          112 LHEAAA--KGKYEICKLLLQHGADP  134 (165)
T ss_dssp             HHHHHH--TTCHHHHHHHHHTTCCT
T ss_pred             HHHHHH--cCCHHHHHHHHHcCCCC
Confidence            999984  44578999998886553

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.85  E-value=1.2e-21  Score=125.39  Aligned_cols=96  Identities=23%  Similarity=0.329  Sum_probs=85.7

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+. ++.+++++|++.|++++..+... |+||||+|+..++.+++++|+++|+++  +.++..|.|||
T Consensus        40 ~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~tpl  115 (136)
T 1d9s_A           40 ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT-LTRPVHDAAREGFLDTLVVLHRAGARL--DVCDAWGRLPV  115 (136)
T ss_dssp             CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT-TBCHHHHHHHHTCHHHHHHHHHTCCCC--CCCSSSSSCHH
T ss_pred             CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHH
Confidence            358899999999999 99999999999999999876531 689999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHhhc
Q 031810           89 HYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      |+|+  ..++.+++++|.+.+.
T Consensus       116 ~~A~--~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A          116 DLAE--EQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHH--HHTCHHHHHHHHHHHC
T ss_pred             HHHH--HcCCHHHHHHHHHcCC
Confidence            9998  4445789999988764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.85  E-value=5e-21  Score=135.89  Aligned_cols=79  Identities=32%  Similarity=0.492  Sum_probs=43.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|.+|+||||+|+..|+.+++++|++.|++++..+..  |.||+|+|+..++.+++++|++.|+++  +.+|..|.||||
T Consensus        82 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~--g~t~l~~a~~~~~~~~~~~Ll~~g~~~--n~~d~~g~TpL~  157 (269)
T 4b93_B           82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNAD--QAVPLHLACQQGHFQVVKCLLDSNAKP--NKKDLSGNTPLI  157 (269)
T ss_dssp             CCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTCCCHHH
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCC--CCCccccccccChHHHHHHHHHCCCCC--CCCCCCCCCHHH
Confidence            3677777777777777777777666666555554443  444444444444444444444444443  344444444444


Q ss_pred             ccc
Q 031810           90 YCP   92 (152)
Q Consensus        90 ~a~   92 (152)
                      +|+
T Consensus       158 ~A~  160 (269)
T 4b93_B          158 YAC  160 (269)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.85  E-value=7.8e-21  Score=128.05  Aligned_cols=94  Identities=23%  Similarity=0.310  Sum_probs=60.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      |..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +.++..|.||||+
T Consensus        65 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~  140 (192)
T 2rfm_A           65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFS--GKTPLMWSIIFGYSEMSYFLLEHGANV--NDRNLEGETPLIV  140 (192)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCTTCCCHHHH
T ss_pred             cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--CCcHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHH
Confidence            556666666666666666666666666666666655  666666666666666666666666655  5666666666666


Q ss_pred             cccchhhHHHHHHHHHHhhc
Q 031810           91 CPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~~  110 (152)
                      |+  ..++.+++++|.+.+.
T Consensus       141 A~--~~~~~~~v~~Ll~~ga  158 (192)
T 2rfm_A          141 AS--KYGRSEIVKKLLELGA  158 (192)
T ss_dssp             HH--HHTCHHHHHHHHHTTC
T ss_pred             HH--HcCCHHHHHHHHHCCC
Confidence            66  3333566666665543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.85  E-value=9.8e-21  Score=131.45  Aligned_cols=98  Identities=26%  Similarity=0.459  Sum_probs=80.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCC-CCCCCcc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND-SRFNPPL   88 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~-~~g~tpl   88 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..|+.+++++|++.|+++  +..+ ..|.|||
T Consensus        50 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~--g~tpLh~A~~~g~~~~v~~Ll~~ga~~--~~~~~~~g~tpL  125 (229)
T 2vge_A           50 PNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH--GWTPLHCAASCNDTVICMALVQHGAAI--FATTLSDGATAF  125 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHTTTCCT--TCCCSSTTCCTG
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--ccccCCCCCCHH
Confidence            4788999999999999999999999999998888877  889999999999999999999999877  6664 6889999


Q ss_pred             cccccchhhHHHHHHHHHHhhcC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |+|+....+..+++++|.+.+.+
T Consensus       126 ~~A~a~~~~~~~~v~~Ll~~ga~  148 (229)
T 2vge_A          126 EKCDPYREGYADCATYLADVEQS  148 (229)
T ss_dssp             GGCCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcChHHHHHHHHHcCCC
Confidence            99822255667888888887654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.85  E-value=4.4e-21  Score=125.80  Aligned_cols=97  Identities=25%  Similarity=0.328  Sum_probs=86.8

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|++. .+..+..|.|||
T Consensus        65 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~t~l  141 (162)
T 1ihb_A           65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE--GNLPLHLAAKEGHLRVVEFLVKHTASN-VGHRNHKGDTAC  141 (162)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHSCCC-TTCCCTTSCCHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHccCCC-CCCcCCCCCcHH
Confidence            35889999999999999999999999999999999887  999999999999999999999999972 278899999999


Q ss_pred             cccccchhhHHHHHHHHHHhhc
Q 031810           89 HYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      |+|+  ..++.+++++|.+.+.
T Consensus       142 ~~A~--~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          142 DLAR--LYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHH--HTTCHHHHHHHHHTC-
T ss_pred             HHHH--HcCCHHHHHHHHHhCC
Confidence            9998  4455789999988654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.85  E-value=9e-21  Score=123.64  Aligned_cols=93  Identities=23%  Similarity=0.339  Sum_probs=85.5

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+ +..|+.+++++|++.|++++..+..  |+||||+|+..|+.+++++|++.|+++  +.++..|.|||
T Consensus        31 ~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L  105 (156)
T 1bd8_A           31 ALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTS--GTSPVHDAARTGFLDTLKVLVEHGADV--NVPDGTGALPI  105 (156)
T ss_dssp             CCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTSCCHH
T ss_pred             ccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCC--CCCHHHHHHHcCcHHHHHHHHHcCCCC--CCcCCCCCcHH
Confidence            358899999999 9999999999999999999998887  999999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHh
Q 031810           89 HYCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~  108 (152)
                      |+|+  ..++.+++++|.+.
T Consensus       106 ~~A~--~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A          106 HLAV--QEGHTAVVSFLAAE  123 (156)
T ss_dssp             HHHH--HHTCHHHHHHHHTT
T ss_pred             HHHH--HhChHHHHHHHHhc
Confidence            9999  44557899999887

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.85  E-value=5e-21  Score=124.72  Aligned_cols=97  Identities=35%  Similarity=0.444  Sum_probs=88.4

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      .|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +.++..|.||||
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~  105 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV--DRTPLHMAASEGHANIVEVLLKHGADV--NAKDMLKMTALH  105 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT--CCCHHHHHHHHTCHHHHHHHHTTTCCT--TCCCTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHcChHHHHHHHHHcCCCC--CCCCCCCCCHHH
Confidence            4788999999999999999999999999999998887  999999999999999999999999988  889999999999


Q ss_pred             ccccchhhHHHHHHHHHHhhcCC
Q 031810           90 YCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      +|+.  .++.+++++|.+.+...
T Consensus       106 ~A~~--~~~~~~v~~Ll~~ga~~  126 (153)
T 1awc_B          106 WATE--HNHQEVVELLIKYGADV  126 (153)
T ss_dssp             HHHH--TTCHHHHHHHHHTTCCT
T ss_pred             HHHH--cCCHHHHHHHHHcCCCc
Confidence            9984  44578999999886553

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.85  E-value=1.3e-20  Score=122.68  Aligned_cols=90  Identities=29%  Similarity=0.430  Sum_probs=53.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +.++..|.||||
T Consensus        63 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~  138 (153)
T 1awc_B           63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML--KMTALHWATEHNHQEVVELLIKYGADV--HTQSKFCKTAFD  138 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHH
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCCHHH
Confidence            3555666666666666666666666666666665555  666666666666666666666666655  555666666666


Q ss_pred             ccccchhhHHHHHHHH
Q 031810           90 YCPSLEWAYEEMMRFQ  105 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l  105 (152)
                      +|+  ..++.+++++|
T Consensus       139 ~A~--~~~~~~i~~~L  152 (153)
T 1awc_B          139 ISI--DNGNEDLAEIL  152 (153)
T ss_dssp             HHH--HTTCHHHHHHH
T ss_pred             HHH--HcCCHHHHHHh
Confidence            665  22334555544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.85  E-value=8.2e-21  Score=125.01  Aligned_cols=93  Identities=29%  Similarity=0.429  Sum_probs=72.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +.++..|.||||
T Consensus        71 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~  146 (165)
T 3twr_A           71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW--KFTPLHEAAAKGKYEICKLLLQHGADP--TKKNRDGNTPLD  146 (165)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCTGG
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCChhH
Confidence            4777888888888888888888888888888877776  888888888888888888888888876  778888888888


Q ss_pred             ccccchhhHHHHHHHHHHhh
Q 031810           90 YCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~  109 (152)
                      +|..   ++.+++++|.+.+
T Consensus       147 ~a~~---~~~~i~~~L~~~g  163 (165)
T 3twr_A          147 LVKD---GDTDIQDLLRGDA  163 (165)
T ss_dssp             GSCT---TCHHHHHHHHTC-
T ss_pred             hHhc---CChHHHHHHhhcc
Confidence            8763   2357777776543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.85  E-value=5.4e-21  Score=124.72  Aligned_cols=94  Identities=28%  Similarity=0.435  Sum_probs=85.1

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +.+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..|+.+++++|++. +++  +.++..|.||
T Consensus        62 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~-~~~--~~~~~~g~t~  136 (156)
T 1bd8_A           62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT--GALPIHLAVQEGHTAVVSFLAAE-SDL--HRRDARGLTP  136 (156)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHHTCHHHHHHHHTT-SCT--TCCCTTSCCH
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC--CCcHHHHHHHhChHHHHHHHHhc-cCC--CCcCCCCCCH
Confidence            335889999999999999999999999999999999887  99999999999999999999999 877  8899999999


Q ss_pred             ccccccchhhHHHHHHHHHHh
Q 031810           88 LHYCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~  108 (152)
                      ||+|+  ..++.+++++|.+.
T Consensus       137 l~~A~--~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          137 LELAL--QRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHH--HSCCHHHHHHHHTT
T ss_pred             HHHHH--HcCcHHHHHHHHhh
Confidence            99998  44457899888764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.84  E-value=2.8e-21  Score=119.68  Aligned_cols=91  Identities=29%  Similarity=0.356  Sum_probs=81.4

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      ..|.+|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +.+|..|.|||
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~--g~tpLh~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~tpl   94 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN--GSTPLHLAARNGHLEVVKLLLEAGADV--XAQDKFGKTAF   94 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccccCCCcHH
Confidence            35788999999999999999999999999999999887  999999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHH
Q 031810           89 HYCPSLEWAYEEMMRFQ  105 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l  105 (152)
                      |+|+  ..++.+++++|
T Consensus        95 ~~A~--~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISI--DNGNEDLAEIL  109 (110)
T ss_dssp             HHHH--HHTCHHHHHHH
T ss_pred             HHHH--HcCCHHHHHHh
Confidence            9998  44457788776

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.84  E-value=8.9e-21  Score=125.61  Aligned_cols=97  Identities=24%  Similarity=0.320  Sum_probs=88.9

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +.++..|.|||
T Consensus        64 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l  139 (172)
T 3v30_A           64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVRGNHVKCVEALLARGADL--TTEADSGYTPM  139 (172)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHH
T ss_pred             hhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCCHH
Confidence            34889999999999999999999999999999999887  999999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |+|+  ..++.+++++|.+....
T Consensus       140 ~~A~--~~~~~~~~~~L~~~~~~  160 (172)
T 3v30_A          140 DLAV--ALGYRKVQQVIENHILK  160 (172)
T ss_dssp             HHHH--HHTCHHHHHHHHHHHHH
T ss_pred             HHHH--HhCcHHHHHHHHHHHHH
Confidence            9998  44457899999888765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=5.9e-21  Score=120.17  Aligned_cols=81  Identities=32%  Similarity=0.414  Sum_probs=76.6

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +.+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +.++..|.||
T Consensus        34 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~  109 (123)
T 3aaa_C           34 NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH--HITPLLSAVYEGHVSCVKLLLSKGADK--TVKGPDGLTA  109 (123)
T ss_dssp             TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCH
Confidence            345889999999999999999999999999999999887  999999999999999999999999988  8899999999


Q ss_pred             ccccc
Q 031810           88 LHYCP   92 (152)
Q Consensus        88 l~~a~   92 (152)
                      ||+|.
T Consensus       110 l~~A~  114 (123)
T 3aaa_C          110 FEATD  114 (123)
T ss_dssp             HHHCC
T ss_pred             HHHhC
Confidence            99996

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.4e-20  Score=118.14  Aligned_cols=93  Identities=43%  Similarity=0.649  Sum_probs=67.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 031810           13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP   92 (152)
Q Consensus        13 ~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~   92 (152)
                      +|.||||+|+..|+.+++++|++.|++++..+..  |.||||+|+..++.+++++|++.|+++  +.++..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC--CCcHHHHHHHcCcHHHHHHHHHcCCCC--cccCCCCCcHHHHHH
Confidence            3677777777777777777777777777776665  777777777777777777777777766  667777777777777


Q ss_pred             cchhhHHHHHHHHHHhhcC
Q 031810           93 SLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        93 ~~~~~~~~~~~~l~~~~~~  111 (152)
                      .  .++.+++++|.+.+..
T Consensus        77 ~--~~~~~~~~~Ll~~g~~   93 (126)
T 1n0r_A           77 R--NGHLEVVKLLLEAGAD   93 (126)
T ss_dssp             H--TTCHHHHHHHHHTTCC
T ss_pred             H--cChHHHHHHHHHcCCC
Confidence            3  3346677777766544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.84  E-value=1.6e-20  Score=126.55  Aligned_cols=133  Identities=20%  Similarity=0.141  Sum_probs=102.7

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +..+..|.|||
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L  105 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIE--GSTALIWAVKNNRLGIAEKLLSKGSNV--NTKDFSGKTPL  105 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTSCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccccc--CccHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCcHH
Confidence            35899999999999999999999999999999998887  999999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcCCCc-cCCchhhhHHHHHHhhhhhHHHhhhcCCccccc
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSAGET-SYSSEKLNALSRLLVHMMPLLWLDLASDAVLSV  147 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (152)
                      |+|+  ..++.+++++|.+.+..... ...+......+....+...+.+....+..+..+
T Consensus       106 ~~A~--~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  163 (192)
T 2rfm_A          106 MWSI--IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR  163 (192)
T ss_dssp             HHHH--HHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB
T ss_pred             HHHH--HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            9998  44457899999887655322 222222222333344445555555544444333

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.84  E-value=1.4e-20  Score=124.54  Aligned_cols=94  Identities=35%  Similarity=0.482  Sum_probs=86.2

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +.++..|.|||
T Consensus        75 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l  150 (169)
T 2y1l_E           75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME--GHTPLHLAAMFGHLEIVEVLLKNGADV--NAQDKFGKTAF  150 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHH
Confidence            35889999999999999999999999999999998887  999999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHh
Q 031810           89 HYCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~  108 (152)
                      ++|+  ..++.+++++|.+.
T Consensus       151 ~~A~--~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          151 DISI--DNGNEDLAEILQKL  168 (169)
T ss_dssp             HHHH--HTTCHHHHHHHHTC
T ss_pred             HHHH--HhCCHHHHHHHHHc
Confidence            9998  44457899988764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.84  E-value=4.6e-20  Score=131.66  Aligned_cols=100  Identities=20%  Similarity=0.252  Sum_probs=86.9

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +.+|..|.||||+|+..|+.++++.|++.|++++..+..  |+||||+|+..|+.+++++|++.|+++  +..+..|.||
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~t~  128 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD--HVSPLHEACLGGHLSCVKILLKHGAQV--NGVTADWHTP  128 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT--CCCHHHHHHHTTCHHHHHHHHHTTCCS--SCCCTTCCCH
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC--CCCHHHHHHHCCcHHHHHHHHHCCCCC--CCCCCCCCCH
Confidence            346888999999999999999999999999999988887  999999999999999999999999987  8889999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcCCC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSAGE  113 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~~~  113 (152)
                      ||+|+  ..++.+++++|.+......
T Consensus       129 L~~A~--~~~~~~~v~~Ll~~g~~~~  152 (285)
T 3d9h_A          129 LFNAC--VSGSWDCVNLLLQHGASVQ  152 (285)
T ss_dssp             HHHHH--HHTCHHHHHHHHHTTCCSS
T ss_pred             HHHHH--HcCHHHHHHHHHHCCCCCC
Confidence            99998  4445788888888765543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.84  E-value=1.5e-20  Score=120.37  Aligned_cols=94  Identities=32%  Similarity=0.447  Sum_probs=86.2

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +..|..|.|||
T Consensus        42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~tpl  117 (136)
T 2jab_A           42 AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI--GFTPLHLAAFIGHLEIAEVLLKHGADV--NAQDKFGKTAF  117 (136)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--cCcCCCCCCHH
Confidence            35889999999999999999999999999999998887  999999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHh
Q 031810           89 HYCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~  108 (152)
                      |+|+  ..++.+++++|.+.
T Consensus       118 ~~A~--~~~~~~~~~~Ll~~  135 (136)
T 2jab_A          118 DISI--GNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHH--HTTCHHHHHHHHHC
T ss_pred             HHHH--HCCCHHHHHHHHHc
Confidence            9998  44457899988764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.84  E-value=1.3e-20  Score=124.25  Aligned_cols=97  Identities=21%  Similarity=0.271  Sum_probs=88.7

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +..+..|.|||
T Consensus        64 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l  139 (167)
T 3v31_A           64 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN--GGTPLLYAVHGNHVKCVKMLLESGADP--TIETDSGYNSM  139 (167)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHH
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHH
Confidence            34889999999999999999999999999999999887  999999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      ++|+  ..++.+++++|.+...+
T Consensus       140 ~~A~--~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          140 DLAV--ALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             HHHH--HHTCHHHHHHHHHHHHH
T ss_pred             HHHH--HcCcHHHHHHHHHHHHH
Confidence            9998  44558899999887654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.84  E-value=9.3e-21  Score=132.06  Aligned_cols=91  Identities=23%  Similarity=0.276  Sum_probs=43.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 031810           13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP   92 (152)
Q Consensus        13 ~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~   92 (152)
                      .|.||||.|+..|+.++++.|++.|++++..+..  |+||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+
T Consensus        36 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~d~~g~tpL~~A~  111 (239)
T 1ycs_B           36 LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE--GITALHNAVCAGHTEIVKFLVQFGVNV--NAADSDGWTPLHCAA  111 (239)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTT--SCCHHHHHHHHTCHHHHHHHHHHTCCT--TCCCTTCCCHHHHHH
T ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHH
Confidence            3445555555555555555555544444444444  445555555555555555555554444  444444555555554


Q ss_pred             cchhhHHHHHHHHHHhh
Q 031810           93 SLEWAYEEMMRFQRESF  109 (152)
Q Consensus        93 ~~~~~~~~~~~~l~~~~  109 (152)
                        ..++.+++++|.+.+
T Consensus       112 --~~~~~~~v~~Ll~~g  126 (239)
T 1ycs_B          112 --SCNNVQVCKFLVESG  126 (239)
T ss_dssp             --HTTCHHHHHHHHHTT
T ss_pred             --HcCCHHHHHHHHHcC
Confidence              222244444444443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=2.9e-20  Score=130.11  Aligned_cols=95  Identities=31%  Similarity=0.411  Sum_probs=77.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART-KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..+ ..  |+||||+|+..|+.+++++|+++|+++  +.++..|.|||
T Consensus        73 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~d~~g~t~l  148 (244)
T 3ui2_A           73 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG--GLTALHMAAGYVRPEVVEALVELGADI--EVEDERGLTAL  148 (244)
T ss_dssp             BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCcHH
Confidence            47888899999998888888998988888888777 55  889999998888888999888888877  77888888888


Q ss_pred             cccccc--------------hhhHHHHHHHHHHh
Q 031810           89 HYCPSL--------------EWAYEEMMRFQRES  108 (152)
Q Consensus        89 ~~a~~~--------------~~~~~~~~~~l~~~  108 (152)
                      |+|+..              ..+..+++++|.+.
T Consensus       149 ~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          149 ELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            888632              23556777777765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.83  E-value=2.2e-21  Score=126.98  Aligned_cols=129  Identities=19%  Similarity=0.159  Sum_probs=86.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCC-cc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP-PL   88 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~t-pl   88 (152)
                      .+..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+ .++.+++++|++.|+++  +.++..|.| ||
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~-~~~~~~v~~Ll~~g~~~--~~~d~~g~ttpL   82 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSY--GRRPIQVMM-MGSARVAELLLLHGAEP--NCADPATLTRPV   82 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSS--SCCTTTSSC-TTCHHHHHHHHTTTCCC--CCCCTTTCCCHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC--CCCHHHHHH-cCCHHHHHHHHHcCCCC--CCcCCCCCcHHH
Confidence            3677888888888888888888888888888887776  888888874 78888888888888877  778888888 88


Q ss_pred             cccccchhhHHHHHHHHHHhhcCCCc-cCCchhhhHHHHHHhhhhhHHHhhhcCCccc
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSAGET-SYSSEKLNALSRLLVHMMPLLWLDLASDAVL  145 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (152)
                      |+|+  ..++.+++++|.+.+..... ...+......+....+...+.++...+..+.
T Consensus        83 ~~A~--~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~  138 (156)
T 1bi7_B           83 HDAA--REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR  138 (156)
T ss_dssp             HHHH--HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----
T ss_pred             HHHH--HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC
Confidence            8887  34446788888777654322 2222233333333445555555555544443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.83  E-value=3.2e-20  Score=124.43  Aligned_cols=94  Identities=30%  Similarity=0.274  Sum_probs=64.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCC-CCCCCccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND-SRFNPPLH   89 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~-~~g~tpl~   89 (152)
                      +..|.||||+|+..|+.++++.|++ |++++..+..  |+||||+|+..|+.+++++|+++|+++  +.++ ..|.||||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~~g~tpL~  115 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDEN--GRTALLFVAGLGSDKCVRLLAEAGADL--DHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCSSSSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CcCCCCCCCCHHH
Confidence            3456777777777777777777777 7777776666  777777777777777777777777766  5555 66777777


Q ss_pred             ccccchhhHHHHHHHHHHhhcC
Q 031810           90 YCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      +|+  ..++.+++++|.+.+..
T Consensus       116 ~A~--~~~~~~~v~~Ll~~ga~  135 (183)
T 3deo_A          116 MAA--GYVRPEVVEALVELGAD  135 (183)
T ss_dssp             HHH--HTTCHHHHHHHHHHTCC
T ss_pred             HHH--hcCcHHHHHHHHHcCCC
Confidence            776  33345677777666544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.83  E-value=2.9e-21  Score=130.26  Aligned_cols=96  Identities=17%  Similarity=0.119  Sum_probs=82.9

Q ss_pred             CCCCcHHHHHHHcCC----HHHHHHHHhcCCCccccccCCCCchHHHHHHhhCc------HHHHHHHHHcCCCCCCCCCC
Q 031810           12 SKGVTPLHLAAQGGH----LEVMDVLLERGADIDARTKGACGWTPLHTAAKERK------KEAVRFLIENGAFLPDDIND   81 (152)
Q Consensus        12 ~~g~t~L~~a~~~g~----~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~------~~~~~~Ll~~ga~~~~~~~~   81 (152)
                      ..|+||||+|+..++    .+++++|++.|+++|.++..  |+||||+|+..++      .+++++|+++|+++  +.+|
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~--g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi--n~~d  111 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKE--GTTLFFPLFQGGGNDITGTTELCKIFLEKGADI--TALY  111 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTT--CCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS--SSCB
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCC--CCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC--CccC
Confidence            669999999999874    89999999999999999987  9999999999886      57899999999988  8999


Q ss_pred             CCCC-Ccccccccch---hhHHHHHHHHHH-hhcC
Q 031810           82 SRFN-PPLHYCPSLE---WAYEEMMRFQRE-SFSA  111 (152)
Q Consensus        82 ~~g~-tpl~~a~~~~---~~~~~~~~~l~~-~~~~  111 (152)
                      ..|. ||||+|+..+   ....+++++|++ .+.+
T Consensus       112 ~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad  146 (186)
T 3t8k_A          112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ  146 (186)
T ss_dssp             GGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC
T ss_pred             CCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC
Confidence            9999 9999998532   344678888887 5544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.83  E-value=2.8e-20  Score=130.41  Aligned_cols=107  Identities=28%  Similarity=0.275  Sum_probs=89.4

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccC-----------CCCchHHHHHHhhCcHHHHHHHHH--
Q 031810            4 NVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG-----------ACGWTPLHTAAKERKKEAVRFLIE--   70 (152)
Q Consensus         4 n~~~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~-----------~~g~t~l~~a~~~~~~~~~~~Ll~--   70 (152)
                      |.....+|..|.||||+|+..|+.+++++|++.|++++..+..           ..|+||||+|+..|+.+++++|++  
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  159 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP  159 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            3333445688999999999999999999999999999987652           128999999999999999999999  


Q ss_pred             -cCCCCCCCCCCCCCCCcccccccchhhHHH-------HHHHHHHhhcCC
Q 031810           71 -NGAFLPDDINDSRFNPPLHYCPSLEWAYEE-------MMRFQRESFSAG  112 (152)
Q Consensus        71 -~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~-------~~~~l~~~~~~~  112 (152)
                       .|+++  +.+|..|+||||+|+..+.+..+       ++++|.+.+.+.
T Consensus       160 ~~ga~~--n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          160 HQPASL--EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             SCCCCT--TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCc--CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence             99988  89999999999999853344455       888888876543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=2.1e-20  Score=128.65  Aligned_cols=90  Identities=22%  Similarity=0.268  Sum_probs=42.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHc-CCCCCCCCCCCCCCCccccc
Q 031810           13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN-GAFLPDDINDSRFNPPLHYC   91 (152)
Q Consensus        13 ~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-ga~~~~~~~~~~g~tpl~~a   91 (152)
                      .|.||||+|+..|+.++++.|++.|++++..+..  |+||||+|+..|+.+++++|++. |+++  +.+|..|.||||+|
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~~g~~~--~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA--GSTALYWACHGGHKDIVEMLFTQPNIEL--NQQNKLGDTALHAA  147 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHTTSTTCCC--CCCCTTSCCHHHHH
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCccccCCC--CCCHHHHHHHcCCHHHHHHHHcCCCCCc--cccCCCCCCHHHHH
Confidence            3444555554444444444444444444444443  44555555444444444444444 4444  44444444555444


Q ss_pred             ccchhhHHHHHHHHHHh
Q 031810           92 PSLEWAYEEMMRFQRES  108 (152)
Q Consensus        92 ~~~~~~~~~~~~~l~~~  108 (152)
                      +  ..++.+++++|++.
T Consensus       148 ~--~~~~~~~v~~Ll~~  162 (222)
T 3ehr_A          148 A--WKGYADIVQLLLAK  162 (222)
T ss_dssp             H--HHTCHHHHHHHHHH
T ss_pred             H--HcCCHHHHHHHHHc
Confidence            4  22223444444444

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.83  E-value=3.2e-20  Score=131.35  Aligned_cols=105  Identities=28%  Similarity=0.259  Sum_probs=88.8

Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccc--------------CCCCchHHHHHHhhCcHHHHHHH
Q 031810            3 VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK--------------GACGWTPLHTAAKERKKEAVRFL   68 (152)
Q Consensus         3 ~n~~~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~--------------~~~g~t~l~~a~~~~~~~~~~~L   68 (152)
                      +|.....+|..|.||||+|+..|+.+++++|++.|++++..+.              .  |+||||+|+..|+.+++++|
T Consensus        90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~--g~tpL~~A~~~g~~~~v~~L  167 (273)
T 2pnn_A           90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYF--GELPLSLAACTNQLAIVKFL  167 (273)
T ss_dssp             HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCS--CBSHHHHHHHTTCHHHHHHH
T ss_pred             hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccC--CCCHHHHHHHcCCHHHHHHH
Confidence            3444444578999999999999999999999999999998876              5  89999999999999999999


Q ss_pred             HH---cCCCCCCCCCCCCCCCcccccccchhh-------HHHHHHHHHHhhcC
Q 031810           69 IE---NGAFLPDDINDSRFNPPLHYCPSLEWA-------YEEMMRFQRESFSA  111 (152)
Q Consensus        69 l~---~ga~~~~~~~~~~g~tpl~~a~~~~~~-------~~~~~~~l~~~~~~  111 (152)
                      ++   .|+++  +.+|..|+||||+|+..+..       ..+++++|.+.+..
T Consensus       168 l~~~~~gad~--~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~  218 (273)
T 2pnn_A          168 LQNSWQPADI--SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK  218 (273)
T ss_dssp             HHCSSCCCCT--TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccCCCCc--eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh
Confidence            99   89988  88999999999999853321       04677788777654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.83  E-value=2.7e-20  Score=131.56  Aligned_cols=101  Identities=25%  Similarity=0.314  Sum_probs=89.7

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +.+|..|.||||+|+..|+.+++++|++.|++++..+.. .|+||||+|+..++.+++++|+++|+++  +.++..|.||
T Consensus       152 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~gad~--~~~d~~g~tp  228 (282)
T 1oy3_D          152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT-CGRTPLHLAVEAQAASVLELLLKAGADP--TARMYGGRTP  228 (282)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCH
T ss_pred             CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcCHHHHHHHcCCHHHHHHHHHcCCCC--cccccCCCCH
Confidence            345889999999999999999999999999999987632 2899999999999999999999999988  8899999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcCCC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSAGE  113 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~~~  113 (152)
                      ||+|+.  .++.+++++|.+.+....
T Consensus       229 L~~A~~--~~~~~~v~~Ll~~ga~~~  252 (282)
T 1oy3_D          229 LGSALL--RPNPILARLLRAHGAPEP  252 (282)
T ss_dssp             HHHHHT--SSCHHHHHHHHHTTCCCC
T ss_pred             HHHHHH--cCCcHHHHHHHHcCCCcC
Confidence            999994  445789999999887643

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.83  E-value=1.9e-20  Score=131.43  Aligned_cols=103  Identities=27%  Similarity=0.268  Sum_probs=87.5

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc--------------cCCCCchHHHHHHhhCcHHHHHHHHH
Q 031810            5 VAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART--------------KGACGWTPLHTAAKERKKEAVRFLIE   70 (152)
Q Consensus         5 ~~~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~--------------~~~~g~t~l~~a~~~~~~~~~~~Ll~   70 (152)
                      ...+..|..|.||||+|+..|+.+++++|++.|++++..+              ..  |+||||+|+..|+.+++++|++
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~--g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYF--GELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCS--CSSHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccC--CCCHHHHHHHcCCHHHHHHHHh
Confidence            3334456789999999999999999999999999999887              35  9999999999999999999999


Q ss_pred             ---cCCCCCCCCCCCCCCCcccccccchhhH-------HHHHHHHHHhhcC
Q 031810           71 ---NGAFLPDDINDSRFNPPLHYCPSLEWAY-------EEMMRFQRESFSA  111 (152)
Q Consensus        71 ---~ga~~~~~~~~~~g~tpl~~a~~~~~~~-------~~~~~~l~~~~~~  111 (152)
                         .|+++  +.+|..|+||||+|+..+...       .+++++|.+.+..
T Consensus       162 ~~~~ga~~--~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~  210 (260)
T 3jxi_A          162 NGHKQADL--RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK  210 (260)
T ss_dssp             CSSCCCCT--TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCC--cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc
Confidence               89988  899999999999998433311       4778888877654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.83  E-value=1.4e-20  Score=123.13  Aligned_cols=98  Identities=27%  Similarity=0.393  Sum_probs=86.2

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCch-HHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCC
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWT-PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP   86 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t-~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~t   86 (152)
                      +.+|..|.||||+|+ .|+.+++++|++.|++++..+..  |+| |||+|+..++.+++++|+++|+++  +.++..|.|
T Consensus        39 ~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~--g~ttpL~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~t  113 (156)
T 1bi7_B           39 NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA--TLTRPVHDAAREGFLDTLVVLHRAGARL--DVRDAWGRL  113 (156)
T ss_dssp             TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTT--TCCCHHHHHHHHTCHHHHHHHHHHTCCS--SCCCTTCCC
T ss_pred             CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCC--CCcHHHHHHHHCCCHHHHHHHHHcCCCC--cccCCCCCC
Confidence            335889999999985 89999999999999999999887  999 999999999999999999999988  889999999


Q ss_pred             cccccccchhhHHHHHHHHHHhhcCC
Q 031810           87 PLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        87 pl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |||+|+  ..++.+++++|.+.+...
T Consensus       114 pl~~A~--~~~~~~~v~~Ll~~ga~~  137 (156)
T 1bi7_B          114 PVDLAE--ELGHRDVARYLRAAAGGT  137 (156)
T ss_dssp             HHHHHH--HHTCHHHHHHHSSCC---
T ss_pred             HHHHHH--HhCHHHHHHHHHHcCCCC
Confidence            999998  445578999998876553

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.83  E-value=3.2e-20  Score=132.05  Aligned_cols=93  Identities=23%  Similarity=0.304  Sum_probs=58.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHH-cCCCCCCCCCCCCCCCccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE-NGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~ga~~~~~~~~~~g~tpl~   89 (152)
                      |..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..|+.+++++|++ .|+++  +.+|..|.||||
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~--G~TpLh~A~~~g~~~iv~~Ll~~~gad~--~~~d~~g~TpL~  255 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDD--GSTALMCACEHGHKEIAGLLLAVPSCDI--SLTDRDGSTALM  255 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHTSTTCCT--TCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC--CCCHHHHHHHCCCHHHHHHHHhcCCCCC--cCcCCCCCCHHH
Confidence            555666666666666666666666666666666655  6666666666666666666666 56655  566666666666


Q ss_pred             ccccchhhHHHHHHHHHHhh
Q 031810           90 YCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~  109 (152)
                      +|+  ..++.+++++|.+..
T Consensus       256 ~A~--~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          256 VAL--DAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHH--HHTCHHHHHHHHHHC
T ss_pred             HHH--HcCCHHHHHHHHhcc
Confidence            666  333356666665543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.83  E-value=1.1e-19  Score=114.03  Aligned_cols=96  Identities=42%  Similarity=0.633  Sum_probs=87.6

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..++.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +.++..|.|||
T Consensus        30 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~l~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~l  105 (126)
T 1n0r_A           30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL  105 (126)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHH
T ss_pred             CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCC--CCcHHHHHHHcChHHHHHHHHHcCCCC--cccCCCCCCHH
Confidence            35889999999999999999999999999999998887  999999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHhhc
Q 031810           89 HYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      ++|+  ..++.+++++|.+.+.
T Consensus       106 ~~A~--~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A          106 HLAA--RNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HHHH--HTTCHHHHHHHHHHTC
T ss_pred             HHHH--HcCcHHHHHHHHHcCC
Confidence            9998  4445789999988754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.82  E-value=6.1e-20  Score=128.73  Aligned_cols=95  Identities=28%  Similarity=0.346  Sum_probs=62.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      |..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +.++..|.||||+
T Consensus       121 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpL~~  196 (253)
T 1yyh_A          121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL--GKSALHWAAAVNNVDAAVVLLKNGANK--DMQNNREETPLFL  196 (253)
T ss_dssp             CTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTT--SCBHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHH
T ss_pred             CCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHH
Confidence            566666666666666666666666666666666655  667777777777777777777777665  6666667777777


Q ss_pred             cccchhhHHHHHHHHHHhhcC
Q 031810           91 CPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |+  ..++.+++++|.+.+.+
T Consensus       197 A~--~~~~~~~v~~Ll~~ga~  215 (253)
T 1yyh_A          197 AA--REGSYETAKVLLDHFAN  215 (253)
T ss_dssp             HH--HHTCHHHHHHHHHTTCC
T ss_pred             HH--HCCCHHHHHHHHHcCCC
Confidence            76  33335666666666544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.82  E-value=4.2e-20  Score=124.58  Aligned_cols=96  Identities=20%  Similarity=0.207  Sum_probs=82.9

Q ss_pred             CCCCCCcHHHHHHHcCC------HHHHHHHHhcCCCccccccCCCCc-hHHHHHHhh-----CcHHHHHHHHH-cCCCCC
Q 031810           10 PKSKGVTPLHLAAQGGH------LEVMDVLLERGADIDARTKGACGW-TPLHTAAKE-----RKKEAVRFLIE-NGAFLP   76 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~------~~~~~~Ll~~~~~~~~~~~~~~g~-t~l~~a~~~-----~~~~~~~~Ll~-~ga~~~   76 (152)
                      +|..|+||||+|+..++      .+++++|++.|+++|.+|..  |+ ||||+|+..     +..+++++|++ .|+++ 
T Consensus        71 ~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~--g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-  147 (186)
T 3t8k_A           71 RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP--YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-  147 (186)
T ss_dssp             CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGG--GTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-
T ss_pred             CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCC--cCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-
Confidence            48999999999999886      57899999999999999988  99 999999984     34578999999 99988 


Q ss_pred             CCCCCCCCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           77 DDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        77 ~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                       +.+|..|.||||+|+..  +..+++++|.+...+
T Consensus       148 -~~~d~~G~TpL~~A~~~--~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          148 -LIKDKWGLTALEFVKRC--QKPIALKMMEDYIKK  179 (186)
T ss_dssp             -TCCCTTSCCHHHHHHTT--TCHHHHHHHHHHHHH
T ss_pred             -cccCCCCCCHHHHHHHc--CCHHHHHHHHHHHHH
Confidence             89999999999999844  447888888887654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.82  E-value=2.6e-19  Score=120.99  Aligned_cols=97  Identities=19%  Similarity=0.268  Sum_probs=84.8

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHH-HcCCCCCCCCCCCCCCCc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI-ENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~ga~~~~~~~~~~g~tp   87 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+ ..++++  +..+..|.||
T Consensus        34 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~~g~t~  109 (201)
T 3hra_A           34 EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI--SDSPYLYAGAQGRTEILAYMLKHATPDL--NKHNRYGGNA  109 (201)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHSCCCT--TCCCTTSCCS
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHhccCccc--ccccCCCCcH
Confidence            34888999999999999999999999999999998887  999999999999999999999 556666  8889999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      ||+|+.  .++.+++++|.+....
T Consensus       110 L~~A~~--~~~~~~v~~Ll~~g~~  131 (201)
T 3hra_A          110 LIPAAE--KGHIDNVKLLLEDGRE  131 (201)
T ss_dssp             HHHHHH--TTCHHHHHHHHHHCCC
T ss_pred             HHHHHH--cCCHHHHHHHHHcCCC
Confidence            999984  4457899999888743

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.82  E-value=1.5e-19  Score=125.14  Aligned_cols=95  Identities=31%  Similarity=0.483  Sum_probs=80.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..|+.+++++|++.|+++  +..+..|.||||
T Consensus         7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~   82 (237)
T 3b7b_A            7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSED--QRTPLMEAAENNHLEAVKYLIKAGALV--DPKDAEGSTCLH   82 (237)
T ss_dssp             SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHTTTCCC--CCCCTTSCCHHH
T ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCC--CCCHHHHHHHhCCHHHHHHHHhCCCCC--CCCCCCCCcHHH
Confidence            3788999999999999999999999999998888777  889999999999999999999999877  778888899999


Q ss_pred             ccccchhhHHHHHHHHHHhhc
Q 031810           90 YCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      +|+.  .+..+++++|.+...
T Consensus        83 ~A~~--~~~~~~~~~Ll~~~~  101 (237)
T 3b7b_A           83 LAAK--KGHYEVVQYLLSNGQ  101 (237)
T ss_dssp             HHHH--TTCHHHHHHHHTTTC
T ss_pred             HHHH--cCCHHHHHHHHhCCC
Confidence            9983  444788888887763

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.82  E-value=3.9e-20  Score=129.68  Aligned_cols=97  Identities=27%  Similarity=0.307  Sum_probs=86.7

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +.+|..|.||+
T Consensus       152 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~tpl  227 (253)
T 1yyh_A          152 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR--EETPLFLAAREGSYETAKVLLDHFANR--DITDHMDRLPR  227 (253)
T ss_dssp             CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHcCCCc--cccccCCCCHH
Confidence            34889999999999999999999999999999999887  999999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      ++|+  ..++.+++++|......
T Consensus       228 ~~A~--~~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          228 DIAQ--ERMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             HHHH--HTTCHHHHHHHHC----
T ss_pred             HHHH--HcCCHHHHHHHHHHhhh
Confidence            9998  55558999999876654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.82  E-value=7.4e-20  Score=125.56  Aligned_cols=124  Identities=24%  Similarity=0.267  Sum_probs=97.7

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      ++..|.||||+|+..++.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +.++..|.||||
T Consensus        88 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~  163 (223)
T 2f8y_A           88 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL--GKSALHWAAAVNNVDAAVVLLKNGANK--DMQNNREETPLF  163 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTT--SCBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHH
T ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCC--CCcHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCcCHHH
Confidence            4888999999999999999999999999999998887  999999999999999999999999988  889999999999


Q ss_pred             ccccchhhHHHHHHHHHHhhcCCCcc-CCchhhhHHHHHHhhhhhHHHhhh
Q 031810           90 YCPSLEWAYEEMMRFQRESFSAGETS-YSSEKLNALSRLLVHMMPLLWLDL  139 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  139 (152)
                      +|+  ..++.+++++|.+.+...... ..+......+....+...+.+...
T Consensus       164 ~A~--~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~  212 (223)
T 2f8y_A          164 LAA--REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE  212 (223)
T ss_dssp             HHH--HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHH--HcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHH
Confidence            998  445578999998887654322 222233333333444444444443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.82  E-value=2.5e-19  Score=123.49  Aligned_cols=78  Identities=33%  Similarity=0.629  Sum_probs=34.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      |..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +..+..|.||||+
T Consensus        37 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~  112 (231)
T 3aji_A           37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--GWSPLHIAASAGXDEIVKALLVKGAHV--NAVNQNGCTPLHY  112 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCC--CCCHHHHHHHcCHHHHHHHHHHcCCCC--CCCCCCCCCHHHH
Confidence            344444444444444444444444444444444333  444444444444444444444444433  3344444444444


Q ss_pred             cc
Q 031810           91 CP   92 (152)
Q Consensus        91 a~   92 (152)
                      |+
T Consensus       113 A~  114 (231)
T 3aji_A          113 AA  114 (231)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.82  E-value=2.4e-20  Score=129.97  Aligned_cols=103  Identities=28%  Similarity=0.438  Sum_probs=90.8

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCC-
Q 031810            7 AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFN-   85 (152)
Q Consensus         7 ~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~-   85 (152)
                      .+.+|..|.||||+|+..|+.+++++|+++|++++..+..  |+||||+|+..|+.+++++|+++|+++  +..+..|. 
T Consensus        63 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~~~~  138 (239)
T 1ycs_B           63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD--GWTPLHCAASCNNVQVCKFLVESGAAV--FAMTYSDMQ  138 (239)
T ss_dssp             CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCSSSCC
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--ceecCCCCc
Confidence            3345899999999999999999999999999999999887  999999999999999999999999988  77887776 


Q ss_pred             CcccccccchhhHHHHHHHHHHhhcCCC
Q 031810           86 PPLHYCPSLEWAYEEMMRFQRESFSAGE  113 (152)
Q Consensus        86 tpl~~a~~~~~~~~~~~~~l~~~~~~~~  113 (152)
                      ||||+|.....++.+++++|.+......
T Consensus       139 t~l~~a~~~~~g~~~~~~~Ll~~~a~~~  166 (239)
T 1ycs_B          139 TAADKCEEMEEGYTQCSQFLYGVQEKMG  166 (239)
T ss_dssp             CHHHHCCSSSTTCCCHHHHHHHHHHHTT
T ss_pred             chHHHHHHhhhccHHHHHHHHHhhhccc
Confidence            9999995445666789999998876643

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.82  E-value=1.4e-19  Score=124.93  Aligned_cols=98  Identities=32%  Similarity=0.343  Sum_probs=59.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccC-----------CCCchHHHHHHhhCcHHHHHHHHHcCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG-----------ACGWTPLHTAAKERKKEAVRFLIENGAFLPDD   78 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~-----------~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~   78 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..+..           ..|+||||+|+..|+.+++++|+++|+++  +
T Consensus        71 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~  148 (232)
T 2rfa_A           71 ELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI--R  148 (232)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT--T
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC--C
Confidence            3556666666666666666666666666666655430           12666666666666666666666666665  6


Q ss_pred             CCCCCCCCcccccccchhhHHHHH----HHHHHhhcC
Q 031810           79 INDSRFNPPLHYCPSLEWAYEEMM----RFQRESFSA  111 (152)
Q Consensus        79 ~~~~~g~tpl~~a~~~~~~~~~~~----~~l~~~~~~  111 (152)
                      .+|..|.||||+|+..+.  .+++    ++|.+.+..
T Consensus       149 ~~d~~g~t~L~~A~~~~~--~~~~~~i~~~Ll~~g~~  183 (232)
T 2rfa_A          149 AQDSLGNTVLHILILQPN--KTFACQMYNLLLSYDGG  183 (232)
T ss_dssp             CCCTTSCCHHHHHHTCSC--HHHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCHHHHHHHcCC--hHHHHHHHHHHHhcCCc
Confidence            666666666666663332  3333    555555443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=7e-20  Score=135.25  Aligned_cols=95  Identities=25%  Similarity=0.321  Sum_probs=86.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 031810           12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC   91 (152)
Q Consensus        12 ~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a   91 (152)
                      ..|.||||+|+..|+.+++++|+++|++++..+..  |+||||+|+..++.+++++|+++|+++  +..|..|.||||+|
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~--G~TpLh~A~~~g~~~~v~~LL~~Gad~--~~~d~~G~TpL~~A  308 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSA--GRGPLHHATILGHTGLACLFLKRGADL--GARDSEGRDPLTIA  308 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHcCcHHHHHHHHHCcCCC--CCcCCCCCCHHHHH
Confidence            88999999999999999999999999999999888  999999999999999999999999988  89999999999999


Q ss_pred             ccchhhHHHHHHHHHHhhcCC
Q 031810           92 PSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        92 ~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      +  ..++.+++++|+......
T Consensus       309 ~--~~g~~~iv~lLl~~~~~~  327 (368)
T 3jue_A          309 M--ETANADIVTLLRLAKMRE  327 (368)
T ss_dssp             H--HTTCHHHHHHHHHHHC--
T ss_pred             H--HCCCHHHHHHHHHcCCCc
Confidence            8  444578999998877553

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=4.8e-20  Score=132.84  Aligned_cols=96  Identities=20%  Similarity=0.306  Sum_probs=87.7

Q ss_pred             CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQG---GHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP   86 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~---g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~t   86 (152)
                      .+..|.||||+|+..   ++.+++++|++.|++++..+..  |+||||+|+..|+.+++++|+++|+++  +.+|..|.|
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~--G~TpLh~A~~~g~~~~v~~Ll~~gad~--~~~d~~G~T  261 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD--GNTALHYAALYNQPDCLKLLLKGRALV--GTVNEAGET  261 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCC--SCCCTTSCC
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCC
Confidence            378899999999997   8999999999999999999887  999999999999999999999999988  899999999


Q ss_pred             cccccccchhhHHHHHHHHHHhhcC
Q 031810           87 PLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        87 pl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |||+|+  ..++.+++++|.+.+..
T Consensus       262 pL~~A~--~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          262 ALDIAR--KKHHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHHHH--HHTCHHHHHHHHHHHHH
T ss_pred             HHHHHH--HcCCHHHHHHHHHhcCC
Confidence            999998  44557899999887654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.82  E-value=1.1e-19  Score=125.88  Aligned_cols=96  Identities=24%  Similarity=0.292  Sum_probs=57.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccc-CCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK-GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .|..|.||||+|+..|+.+++++|++.|++++..+. .  |+||||+|+..++.+++++|+++|+++  +..+..|.|||
T Consensus       113 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl  188 (236)
T 1ikn_D          113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN--GRTALHLAVDLQNPDLVSLLLKCGADV--NRVTYQGYSPY  188 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTT--CCCHHHHHHHTTCHHHHHHHHTTTCCS--CCCCTTCCCGG
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CcccCCCCCHH
Confidence            355566666666666666666666666666665554 4  666666666666666666666666655  55666666666


Q ss_pred             cccccchhhHHHHHHHHHHhhcC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |+|+.  .++.+++++|.+.+..
T Consensus       189 ~~A~~--~~~~~~~~~Ll~~ga~  209 (236)
T 1ikn_D          189 QLTWG--RPSTRIQQQLGQLTLE  209 (236)
T ss_dssp             GGCTT--SSCHHHHHHHHTTSCG
T ss_pred             HHHHc--cCchHHHHHHHHcchh
Confidence            66652  2335566666655543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.81  E-value=1.8e-19  Score=124.25  Aligned_cols=98  Identities=31%  Similarity=0.333  Sum_probs=87.6

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..++.+++++|++.|++++..+..  |.||||+|+..++.+++++|++.|+++  +.++..|.|||
T Consensus       101 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L  176 (231)
T 3aji_A          101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY--DATAMHRAAAKGNLKMVHILLFYKAST--NIQDTEGNTPL  176 (231)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCcHHHHHHHcCCHHHHHHHHhcCCCc--cccCCCCCCHH
Confidence            34888999999999999999999999999999988877  999999999999999999999999988  88899999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcCC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |+|+  ..++.+++++|.+.+.+.
T Consensus       177 ~~A~--~~~~~~~v~~Ll~~ga~~  198 (231)
T 3aji_A          177 HLAC--DEERVEEAKFLVTQGASI  198 (231)
T ss_dssp             HHHH--HTTCHHHHHHHHHTTCCS
T ss_pred             HHHH--HCCCHHHHHHHHHCCCCC
Confidence            9998  444578999998886653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.81  E-value=1.4e-19  Score=124.44  Aligned_cols=93  Identities=34%  Similarity=0.432  Sum_probs=53.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcC--CCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERG--ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~--~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      |..|.||||+|+..|+.+++++|++.|  ++++..+..  |.||||+|+..++.+++++|++.|+++  +.++..|.|||
T Consensus        69 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L  144 (228)
T 2dzn_A           69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ--GVTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPL  144 (228)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcC--CCCHHHHHHHcCCHhHHHHHHHcCCCc--cccCCCCCCHH
Confidence            555666666666666666666666655  555555544  566666666666666666666666555  55555666666


Q ss_pred             cccccchhhHHHHHHHHHHhh
Q 031810           89 HYCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~  109 (152)
                      |+|+.  .++.+++++|.+.+
T Consensus       145 ~~A~~--~~~~~~v~~Ll~~g  163 (228)
T 2dzn_A          145 HRAAS--VGSLKLIELLCGLG  163 (228)
T ss_dssp             HHHHH--TTCHHHHHHHHTTT
T ss_pred             HHHHH--cCCHHHHHHHHhcC
Confidence            66652  22345555555554

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.81  E-value=1.4e-19  Score=125.38  Aligned_cols=98  Identities=23%  Similarity=0.240  Sum_probs=64.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCC----CCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLP----DDINDSRFN   85 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~----~~~~~~~g~   85 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|++.|++..    .+..+..|.
T Consensus        41 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  118 (236)
T 1ikn_D           41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR--GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH  118 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTT--CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCC
Confidence            3666777777777777777777777777777766665  7777777777777777777777765410    145566677


Q ss_pred             CcccccccchhhHHHHHHHHHHhhcC
Q 031810           86 PPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        86 tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      ||||+|+.  .++.+++++|.+.+..
T Consensus       119 t~L~~A~~--~~~~~~v~~Ll~~g~~  142 (236)
T 1ikn_D          119 TCLHLASI--HGYLGIVELLVSLGAD  142 (236)
T ss_dssp             CHHHHHHH--TTCHHHHHHHHHHTCC
T ss_pred             CHHHHHHH--cCCHHHHHHHHHcCCC
Confidence            77777763  3335666666666544

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.81  E-value=6e-20  Score=127.46  Aligned_cols=98  Identities=27%  Similarity=0.193  Sum_probs=88.4

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      .+..|.||||+|+..|+.++++.|++.|++++..+..  |+||||+|+..|+.+++++|++.|+++  +.+|..|.||||
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~--g~tpLh~A~~~g~~~~v~~Ll~~ga~~--n~~d~~g~tpLh   92 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE--GITALHNAICGANYSIVDFLITAGANV--NSPDSHGWTPLH   92 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHH
T ss_pred             cccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHH
Confidence            4667788999999999999999999999999998888  999999999999999999999999988  889999999999


Q ss_pred             ccccchhhHHHHHHHHHHhhcCCC
Q 031810           90 YCPSLEWAYEEMMRFQRESFSAGE  113 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~~~  113 (152)
                      +|+.  .++.+++++|.+.+....
T Consensus        93 ~A~~--~g~~~~v~~Ll~~ga~~~  114 (229)
T 2vge_A           93 CAAS--CNDTVICMALVQHGAAIF  114 (229)
T ss_dssp             HHHH--TTCHHHHHHHHTTTCCTT
T ss_pred             HHHH--cCCHHHHHHHHHcCCCcc
Confidence            9994  445889999998876543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.81  E-value=1.5e-19  Score=127.71  Aligned_cols=94  Identities=26%  Similarity=0.211  Sum_probs=69.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---ccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGAD---IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP   86 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~---~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~t   86 (152)
                      +|.+|.||||+|+..|+.+++++|++.|++   ++..+..  |+||||+|+..|+.+++++|+++|+++  +..+..|.|
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~t   80 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL--GQTALHLAAILGEASTVEKLYAAGAGV--LVAERGGHT   80 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCTTSCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCC
Confidence            477788888888888888888888877776   6666665  778888888888888888888888776  677777788


Q ss_pred             cccccccchhhHHHHHHHHHHhh
Q 031810           87 PLHYCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        87 pl~~a~~~~~~~~~~~~~l~~~~  109 (152)
                      |||+|+..  ++.+++++|.+..
T Consensus        81 pL~~A~~~--~~~~~v~~Ll~~~  101 (282)
T 1oy3_D           81 ALHLACRV--RAHTCACVLLQPR  101 (282)
T ss_dssp             HHHHHTTT--TCHHHHHHHSSSC
T ss_pred             HHHHHHHc--CCcchhHhhhccC
Confidence            88887733  3356777776644

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.81  E-value=5.9e-19  Score=125.95  Aligned_cols=92  Identities=29%  Similarity=0.506  Sum_probs=76.1

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..|+.+++++|+++|+++  +..+..|.||||
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~--g~tpL~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~l~  144 (299)
T 1s70_B           69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE--GWIPLHAAASCGYLDIAEYLISQGAHV--GAVNSEGDTPLD  144 (299)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--CCcHHHHHHHcCCHHHHHHHHhCCCCC--CCcCCCCCCHHH
Confidence            4788999999999999999999999999999888877  899999999999999999999999877  778888888888


Q ss_pred             ccccchhhHHHHHHHHHH
Q 031810           90 YCPSLEWAYEEMMRFQRE  107 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~  107 (152)
                      +|+.  .+..++++.+..
T Consensus       145 ~A~~--~~~~~~~~~ll~  160 (299)
T 1s70_B          145 IAEE--EAMEELLQNEVN  160 (299)
T ss_dssp             HCCS--HHHHHHHHHHHH
T ss_pred             HHHh--cchHHHHHHHHh
Confidence            8873  334555554443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.81  E-value=4.6e-19  Score=121.57  Aligned_cols=129  Identities=22%  Similarity=0.144  Sum_probs=97.0

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGA-DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      .+|..|.||||+|+..|+.+++++|++.+. +++..+..  |.||||+|+..++.+++++|++.|+++  +..+..|.||
T Consensus        53 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~  128 (223)
T 2f8y_A           53 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD--GTTPLILAARLAVEGMLEDLINSHADV--NAVDDLGKSA  128 (223)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCT--TCBCTTSCBH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC--CCcHHHHHHHhCcHHHHHHHHHcCCCC--cCcCCCCCcH
Confidence            358889999999999999999999999886 78887777  999999999999999999999999987  8889999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcCCCcc-CCchhhhHHHHHHhhhhhHHHhhhcCCc
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSAGETS-YSSEKLNALSRLLVHMMPLLWLDLASDA  143 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (152)
                      ||+|+.  .++.+++++|.+.+...... ..+......+........+.+....+..
T Consensus       129 L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  183 (223)
T 2f8y_A          129 LHWAAA--VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN  183 (223)
T ss_dssp             HHHHHH--TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHH--cCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999984  44578898888876543222 2222222233333444445554444433

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.81  E-value=1.7e-19  Score=124.87  Aligned_cols=98  Identities=30%  Similarity=0.384  Sum_probs=85.2

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART-KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+ ..  |.||||+|+..++.+++++|++.|+++  +..+..|.||
T Consensus       111 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~  186 (241)
T 1k1a_A          111 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS--GRSPLIHAVENNSLSMVQLLLQHGANV--NAQMYSGSSA  186 (241)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCBCTTSCBH
T ss_pred             ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccC--CCcHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCH
Confidence            348889999999999999999999999999998877 55  899999999999999999999999987  8889999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcCC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      ||+|+  ..++.+++++|.+.+.+.
T Consensus       187 L~~A~--~~~~~~~v~~Ll~~ga~~  209 (241)
T 1k1a_A          187 LHSAS--GRGLLPLVRTLVRSGADS  209 (241)
T ss_dssp             HHHHH--HHTCHHHHHHHHHTTCCT
T ss_pred             HHHHH--HcCCHHHHHHHHhcCCCC
Confidence            99998  445578898888876653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.81  E-value=2.1e-19  Score=128.34  Aligned_cols=96  Identities=19%  Similarity=0.137  Sum_probs=81.9

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..  +  |+||||+|+..|+.+++++|+++|+++  +..+..|.|||
T Consensus        26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~d~~g~t~L   99 (285)
T 3kea_A           26 KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--E--NEFPLHQAATLEDTKIVKILLFSGLDD--SQFDDKGNTAL   99 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--T--TCCHHHHHTTSSSCHHHHHHHHTTCCT--TCCCTTSCCHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--C--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCcHH
Confidence            35888999999999999999999999999988876  3  789999999999999999999999987  77888999999


Q ss_pred             cccccchhhHHHHHHHHHHhhcCC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |+|+  ..++.+++++|.+.+...
T Consensus       100 ~~A~--~~g~~~~v~~Ll~~ga~~  121 (285)
T 3kea_A          100 YYAV--DSGNMQTVKLFVKKNWRL  121 (285)
T ss_dssp             HHHH--HTTCHHHHHHHHHHCGGG
T ss_pred             HHHH--HcCCHHHHHHHHhcCCCC
Confidence            9998  444578888888876543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.80  E-value=2.4e-19  Score=130.03  Aligned_cols=100  Identities=29%  Similarity=0.419  Sum_probs=90.2

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCC
Q 031810            7 AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP   86 (152)
Q Consensus         7 ~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~t   86 (152)
                      .+.+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..|+.+++++|+++|+++  +..+..|.|
T Consensus        51 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~g~~~iv~~Ll~~g~~~--~~~~~~g~t  126 (351)
T 3utm_A           51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG--GLVPLHNACSYGHYEVTELLLKHGACV--NAMDLWQFT  126 (351)
T ss_dssp             CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCC
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCcHHHHHHHCCCHHHHHHHHHCCCCC--CCCCCCCCC
Confidence            3445889999999999999999999999999999999887  999999999999999999999999988  889999999


Q ss_pred             cccccccchhhHHHHHHHHHHhhcCC
Q 031810           87 PLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        87 pl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |||+|+  ..++.+++++|.+.+...
T Consensus       127 ~L~~A~--~~~~~~~v~~Ll~~g~~~  150 (351)
T 3utm_A          127 PLHEAA--SKNRVEVCSLLLSHGADP  150 (351)
T ss_dssp             HHHHHH--HTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHH--HcCCHHHHHHHHHcCCCC
Confidence            999999  444578999999886553

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.80  E-value=3.5e-19  Score=133.41  Aligned_cols=96  Identities=30%  Similarity=0.456  Sum_probs=75.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      .+..|.||||+|+..|+.+++++|++.|++++..+..  |.||||+|+..|+.+++++|++.|+++  +.++..|.||||
T Consensus        10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~--~~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~   85 (437)
T 1n11_A           10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK--VETPLHMAARAGHTEVAKYLLQNKAKV--NAKAKDDQTPLH   85 (437)
T ss_dssp             -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSC--CCCHHHHHHHHTCHHHHHHHHHHTCCS--SCCCTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHhCCCCC--CCCCCCCCCHHH
Confidence            4778888888888888888888888888888887776  888888888888888888888888877  778888888888


Q ss_pred             ccccchhhHHHHHHHHHHhhcC
Q 031810           90 YCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      +|+  ..++.+++++|.+.+..
T Consensus        86 ~A~--~~g~~~~v~~Ll~~ga~  105 (437)
T 1n11_A           86 CAA--RIGHTNMVKLLLENNAN  105 (437)
T ss_dssp             HHH--HHTCHHHHHHHHHHTCC
T ss_pred             HHH--HCCCHHHHHHHHhCCCC
Confidence            888  44447788888877654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.80  E-value=7.8e-19  Score=121.56  Aligned_cols=95  Identities=26%  Similarity=0.304  Sum_probs=56.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLE----RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFN   85 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~----~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~   85 (152)
                      +|.+|.||||+|+..|+.++++.|++    .+.+++..+..  |+||||+|+..|+.+++++|++.|+++  +..+..|.
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~   80 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL--RQTPLHLAVITTLPSVVRLLVTAGASP--MALDRHGQ   80 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccccc--CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCC
Confidence            35666666666666666666666664    45666665555  666666666666666666666666655  55566666


Q ss_pred             CcccccccchhhHHHHHHHHHHhhc
Q 031810           86 PPLHYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        86 tpl~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      ||||+|+.  .+..+++++|.+...
T Consensus        81 t~l~~A~~--~~~~~~~~~Ll~~~~  103 (241)
T 1k1a_A           81 TAAHLACE--HRSPTCLRALLDSAA  103 (241)
T ss_dssp             CHHHHHHH--TTCHHHHHHHHHHSC
T ss_pred             CHHHHHHH--cCCHHHHHHHHHcCC
Confidence            66666652  233455555555543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.80  E-value=9.2e-20  Score=133.75  Aligned_cols=93  Identities=19%  Similarity=0.190  Sum_probs=61.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCC-----ccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCC
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGAD-----IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFN   85 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~-----~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~   85 (152)
                      |..|.||||+|+..|+.+++++|++.|++     ++..+..  |+||||+|+..|+.+++++|+++|+++  +.+|..|.
T Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~gad~--~~~d~~g~  245 (364)
T 3ljn_A          170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ--GNSHLHWAILINWEDVAMRFVEMGIDV--NMEDNEHT  245 (364)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT--CCCTTHHHHTTTCHHHHHHHHTTTCCT--TCCCTTSC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC--CCcHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCC
Confidence            66666777777766667777777766666     6666655  667777777667777777777766665  66666667


Q ss_pred             CcccccccchhhHHHHHHHHHHhh
Q 031810           86 PPLHYCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        86 tpl~~a~~~~~~~~~~~~~l~~~~  109 (152)
                      ||||+|+  ..++.+++++|++.+
T Consensus       246 tpL~~A~--~~g~~~~v~~Ll~~~  267 (364)
T 3ljn_A          246 VPLYLSV--RAAMVLLTKELLQKT  267 (364)
T ss_dssp             CHHHHHH--HTCCHHHHHHHHHHS
T ss_pred             CHHHHHH--HhChHHHHHHHHHcC
Confidence            7777766  333356666666653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.80  E-value=8.5e-20  Score=125.61  Aligned_cols=97  Identities=23%  Similarity=0.375  Sum_probs=82.4

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLER-GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      .+|..|.||||+|+..|+.+++++|++. |++++..+..  |+||||+|+..|+.+++++|+++|+++  +.++..|.||
T Consensus       101 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~  176 (222)
T 3ehr_A          101 GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL--GDTALHAAAWKGYADIVQLLLAKGART--DLRNIEKKLA  176 (222)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTT--SCCHHHHHHHHTCHHHHHHHHHHTCCS--CCCCTTSCCH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--ccccCCCCCH
Confidence            3488999999999999999999999998 9999999888  999999999999999999999999988  8899999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |++|+  ..+..++++.+......
T Consensus       177 l~~A~--~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          177 FDMAT--NAACASLLKKKQGTDAV  198 (222)
T ss_dssp             HHHCC--SHHHHHHHC--------
T ss_pred             HHHhc--chhHHHHHHHHhccchh
Confidence            99998  45557788777766554

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.80  E-value=8.2e-19  Score=125.16  Aligned_cols=92  Identities=27%  Similarity=0.326  Sum_probs=40.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      |..|.||||+|+..|+.+++++|++.|++++..+ .  |.||||+|+..|+.+++++|++.|+++  +..+..|.||||+
T Consensus       122 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~--g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~  196 (285)
T 3d9h_A          122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-D--LASPIHEAARRGHVECVNSLIAYGGNI--DHKISHLGTPLYL  196 (285)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-T--TSCHHHHHHHHTCHHHHHHHHHTTCCT--TCCBTTTBCHHHH
T ss_pred             CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-C--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHH
Confidence            3444444444444444444444444444443221 1  444444444444444444444444444  4444555555555


Q ss_pred             cccchhhHHHHHHHHHHhh
Q 031810           91 CPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~  109 (152)
                      |+  ..++.+++++|.+.+
T Consensus       197 A~--~~~~~~~v~~Ll~~g  213 (285)
T 3d9h_A          197 AC--ENQQRACVKKLLESG  213 (285)
T ss_dssp             HH--HTTCHHHHHHHHHTT
T ss_pred             HH--HcCcHHHHHHHHHCC
Confidence            54  222244555554443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.80  E-value=1.7e-19  Score=121.88  Aligned_cols=100  Identities=20%  Similarity=0.279  Sum_probs=86.6

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHH-hcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcC-CCCCCCCCCCCCCC
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLL-ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG-AFLPDDINDSRFNP   86 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll-~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-a~~~~~~~~~~g~t   86 (152)
                      .+|..|.||||+|+..|+.+++++|+ ..+.+++..+..  |.||||+|+..++.+++++|++.| +++  +.++..|.|
T Consensus        67 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~g~t  142 (201)
T 3hra_A           67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY--GGNALIPAAEKGHIDNVKLLLEDGREDI--DFQNDFGYT  142 (201)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTT--SCCSHHHHHHTTCHHHHHHHHHHCCCCT--TCCCTTSCC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCC--CCcHHHHHHHcCCHHHHHHHHHcCCCCc--CCCCCCCCC
Confidence            34889999999999999999999999 566789988887  999999999999999999999999 777  889999999


Q ss_pred             cccccccchh---hHHHHHHHHHHhhcCC
Q 031810           87 PLHYCPSLEW---AYEEMMRFQRESFSAG  112 (152)
Q Consensus        87 pl~~a~~~~~---~~~~~~~~l~~~~~~~  112 (152)
                      |||+|+..+.   ...+++++|.+.+.+.
T Consensus       143 ~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~  171 (201)
T 3hra_A          143 ALIEAVGLREGNQLYQDIVKLLMENGADQ  171 (201)
T ss_dssp             HHHHHHHSSCCSHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHhccchhhHHHHHHHHHHCCCCC
Confidence            9999984432   2368899998887654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.80  E-value=7.7e-20  Score=128.34  Aligned_cols=96  Identities=21%  Similarity=0.158  Sum_probs=85.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHh---cCCCccccccCCCCchHHHHHHhhCc---------HHHHHHHHHcCCCCCC--
Q 031810           12 SKGVTPLHLAAQGGHLEVMDVLLE---RGADIDARTKGACGWTPLHTAAKERK---------KEAVRFLIENGAFLPD--   77 (152)
Q Consensus        12 ~~g~t~L~~a~~~g~~~~~~~Ll~---~~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~ga~~~~--   77 (152)
                      ..|.||||+|+..|+.+++++|++   .|++++..+..  |+||||+|+..++         .+++++|+++|++++.  
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~--g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~  215 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR--GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT  215 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT--SCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCC--CCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccccc
Confidence            679999999999999999999999   99999999988  9999999998877         7999999999997743  


Q ss_pred             ---CCCCCCCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           78 ---DINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        78 ---~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                         +..+..|.||||+|+  ..++.+++++|++.+..
T Consensus       216 ~~~~~~d~~g~tpL~~A~--~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          216 NLEALLNNDGLSPLMMAA--KTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             CGGGCCCTTSCCHHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred             chhhcccCCCCCHHHHHH--HcCCHHHHHHHHHhCCC
Confidence               568999999999999  44558899999887754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.80  E-value=7.7e-20  Score=129.35  Aligned_cols=97  Identities=25%  Similarity=0.250  Sum_probs=85.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHh---cCCCccccccCCCCchHHHHHHhhCc---------HHHHHHHHHcCCCCCC--
Q 031810           12 SKGVTPLHLAAQGGHLEVMDVLLE---RGADIDARTKGACGWTPLHTAAKERK---------KEAVRFLIENGAFLPD--   77 (152)
Q Consensus        12 ~~g~t~L~~a~~~g~~~~~~~Ll~---~~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~ga~~~~--   77 (152)
                      ..|.||||+|+..|+.+++++|++   .|++++..+..  |+||||+|+..++         .+++++|++.|++++.  
T Consensus       146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~--g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~  223 (273)
T 2pnn_A          146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV--GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL  223 (273)
T ss_dssp             CSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT--SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCC--CCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccc
Confidence            479999999999999999999999   99999999988  9999999999887         7999999999998732  


Q ss_pred             ---CCCCCCCCCcccccccchhhHHHHHHHHHHhhcCC
Q 031810           78 ---DINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        78 ---~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                         +.+|..|.||||+|+  ..++.+++++|++.+...
T Consensus       224 ~~~~~~d~~g~TpL~~A~--~~g~~~iv~~Ll~~ga~d  259 (273)
T 2pnn_A          224 KLEEITNRKGLTPLALAA--SSGKIGVLAYILQREIHE  259 (273)
T ss_dssp             CGGGCCCTTSCCHHHHHH--HTTCHHHHHHHHHHHTC-
T ss_pred             ccccccCCCCCCHHHHHH--HhChHHHHHHHHHCCCCC
Confidence               258999999999999  445589999999988753

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.80  E-value=7.1e-19  Score=120.92  Aligned_cols=90  Identities=27%  Similarity=0.295  Sum_probs=48.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcC-CCCCCCCCCCCCCCccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG-AFLPDDINDSRFNPPLH   89 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-a~~~~~~~~~~g~tpl~   89 (152)
                      |..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..|+.+++++|++.| +++  +.++..|.||||
T Consensus       104 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~d~~g~t~L~  179 (228)
T 2dzn_A          104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF--NQIPLHRAASVGSLKLIELLCGLGKSAV--NWQDKQGWTPLF  179 (228)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHTTCHHHHHHHHTTTCCCS--CCCCTTSCCHHH
T ss_pred             CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCC--CCCHHHHHHHcCCHHHHHHHHhcCcccc--cCcCCCCCCHHH
Confidence            455555555555555555555555555555555544  555555555555555555555555 444  445555555555


Q ss_pred             ccccchhhHHHHHHHHH
Q 031810           90 YCPSLEWAYEEMMRFQR  106 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~  106 (152)
                      +|+  ..++.+++++|.
T Consensus       180 ~A~--~~~~~~~v~~Ll  194 (228)
T 2dzn_A          180 HAL--AEGHGDAAVLLV  194 (228)
T ss_dssp             HHH--HTTCHHHHHHHH
T ss_pred             HHH--HcCCHHHHHHHH
Confidence            555  222345555554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.80  E-value=7.8e-19  Score=121.20  Aligned_cols=98  Identities=28%  Similarity=0.319  Sum_probs=83.8

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-----cccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCC
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADI-----DARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDS   82 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~-----~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~   82 (152)
                      +.+|..|.||||+|+..|+.+++++|++.|+++     +..+..  |+||||+|+..|+.+++++|+++|+++  +..+.
T Consensus        31 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~  106 (232)
T 2rfa_A           31 HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYE--GQTALHIAVINQNVNLVRALLARGASV--SARAT  106 (232)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTT--TCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCC
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCC--CcCHHHHHHHcCCHHHHHHHHhCCCCC--CcccC
Confidence            345899999999999999999999999999887     455555  999999999999999999999999988  55544


Q ss_pred             -------------CCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           83 -------------RFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        83 -------------~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                                   .|.||||+|+  ..++.+++++|.+.+.+
T Consensus       107 ~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~ga~  146 (232)
T 2rfa_A          107 GSVFHYRPHNLIYYGEHPLSFAA--CVGSEEIVRLLIEHGAD  146 (232)
T ss_dssp             SGGGSCCTTCSCCCCSSHHHHHH--HHTCHHHHHHHHHTTCC
T ss_pred             CcceeecccccccCCCCHHHHHH--HcCCHHHHHHHHHCCCC
Confidence                         7999999998  44457899999987655

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.80  E-value=6.8e-20  Score=122.83  Aligned_cols=81  Identities=35%  Similarity=0.445  Sum_probs=76.2

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART-KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+ ..  |+||||+|+..++.+++++|+++|+++  +.+|..|.||
T Consensus        71 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~tp  146 (183)
T 3deo_A           71 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG--GLTALHMAAGYVRPEVVEALVELGADI--EVEDERGLTA  146 (183)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS--SCCHHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTSCCH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC--CCCHHHHHHhcCcHHHHHHHHHcCCCC--cCCCCCCCCH
Confidence            358999999999999999999999999999999887 66  999999999999999999999999988  8899999999


Q ss_pred             cccccc
Q 031810           88 LHYCPS   93 (152)
Q Consensus        88 l~~a~~   93 (152)
                      ||+|+.
T Consensus       147 l~~A~~  152 (183)
T 3deo_A          147 LELARE  152 (183)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999984

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.79  E-value=1e-19  Score=129.96  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=56.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCC-CCcccccc
Q 031810           14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRF-NPPLHYCP   92 (152)
Q Consensus        14 g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g-~tpl~~a~   92 (152)
                      |.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..|+.+++++|+++|+++  +..+..| .||||+|+
T Consensus        62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~~t~L~~A~  137 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK--GNTALYYAVDSGNMQTVKLFVKKNWRL--MFYGKTGWKTSFYHAV  137 (285)
T ss_dssp             TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHCGGG--GGCSSSGGGSHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC--CCcHHHHHHHcCCHHHHHHHHhcCCCC--CccCCCCCCCHHHHHH
Confidence            666666666666666666666666666665555  666666666666666666666666655  5566666 56666665


Q ss_pred             cchhhHHHHHHHHHHhhcC
Q 031810           93 SLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        93 ~~~~~~~~~~~~l~~~~~~  111 (152)
                      .  .++.+++++|.+.+..
T Consensus       138 ~--~~~~~~v~~Ll~~g~~  154 (285)
T 3kea_A          138 M--LNDVSIVSYFLSEIPS  154 (285)
T ss_dssp             H--TTCHHHHHHHHTTSCT
T ss_pred             H--cCCHHHHHHHHhCCCc
Confidence            2  2335566666655433

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.79  E-value=9.8e-19  Score=124.33  Aligned_cols=94  Identities=22%  Similarity=0.329  Sum_probs=75.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CccccccC------------------------------------CCCchH
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGA-DIDARTKG------------------------------------ACGWTP   52 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~-~~~~~~~~------------------------------------~~g~t~   52 (152)
                      +|.+|.||||+|+..|+.+++++|++.|+ +++..+..                                    ..|+||
T Consensus       107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tp  186 (276)
T 4hbd_A          107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTA  186 (276)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCH
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCH
Confidence            48889999999999999999999999887 66554432                                    127788


Q ss_pred             HHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHH
Q 031810           53 LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  107 (152)
Q Consensus        53 l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~  107 (152)
                      ||+|+..|+.+++++|++.|+++  +.+|..|.||||+|+  ..++.+++++|++
T Consensus       187 Lh~A~~~g~~~~v~~Ll~~gad~--n~~d~~G~TpLh~A~--~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          187 LMLAVSHGRVDVVKALLACEADV--NVQDDDGSTALMCAC--EHGHKEIAGLLLA  237 (276)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHH--HHTCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCC--CCCCCCCCCHHHHHH--HCCCHHHHHHHHh
Confidence            88888888888888888888877  778888888888888  4444788888887

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.79  E-value=1.4e-19  Score=126.91  Aligned_cols=95  Identities=27%  Similarity=0.269  Sum_probs=84.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHh---cCCCccccccCCCCchHHHHHHh--hCcHH-------HHHHHHHcCCCCCC---
Q 031810           13 KGVTPLHLAAQGGHLEVMDVLLE---RGADIDARTKGACGWTPLHTAAK--ERKKE-------AVRFLIENGAFLPD---   77 (152)
Q Consensus        13 ~g~t~L~~a~~~g~~~~~~~Ll~---~~~~~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~Ll~~ga~~~~---   77 (152)
                      .|.||||+|+..|+.+++++|++   .|++++..+..  |+||||+|+.  .++.+       ++++|+++|++++.   
T Consensus       135 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~--g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~  212 (256)
T 2etb_A          135 FGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSL--GNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ  212 (256)
T ss_dssp             SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT--SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCC--CCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccc
Confidence            49999999999999999999999   99999999988  9999999998  77888       99999999997632   


Q ss_pred             --CCCCCCCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           78 --DINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        78 --~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                        +.+|..|.||||+|+  ..++.+++++|++.+..
T Consensus       213 ~~~~~d~~g~tpL~~A~--~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          213 LEEISNHQGLTPLKLAA--KEGKIEIFRHILQREFS  246 (256)
T ss_dssp             GGGCCCTTSCCHHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred             cccccCCCCCCHHHHHH--HhCCHHHHHHHHhCCCC
Confidence              568999999999999  44558899999887754

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.79  E-value=2.6e-19  Score=131.39  Aligned_cols=97  Identities=28%  Similarity=0.327  Sum_probs=88.4

Q ss_pred             CCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCC-----CCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGG--HLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF-----LPDDINDS   82 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g--~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~-----~~~~~~~~   82 (152)
                      +|..|.||||+|+..|  +.+++++|++.|++++..+..  |+||||+|+..|+.+++++|++.|++     +  +..+.
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~--g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~~~~~  209 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA--DETPLMRAMEFRNREALDLMMDTVPSKSSLRL--DYANK  209 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT--TCCCT
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC--CCCHHHHHHHcCCHHHHHHHHhcccccccccc--cccCC
Confidence            4778999999999999  999999999999999999887  99999999999999999999999998     6  88999


Q ss_pred             CCCCcccccccchhhHHHHHHHHHHhhcCC
Q 031810           83 RFNPPLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        83 ~g~tpl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      .|.||||+|+.  .++.+++++|++.+.+.
T Consensus       210 ~g~t~L~~A~~--~g~~~~v~~Ll~~gad~  237 (364)
T 3ljn_A          210 QGNSHLHWAIL--INWEDVAMRFVEMGIDV  237 (364)
T ss_dssp             TCCCTTHHHHT--TTCHHHHHHHHTTTCCT
T ss_pred             CCCcHHHHHHH--cCCHHHHHHHHHcCCCC
Confidence            99999999994  44578999999887553

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.79  E-value=3e-19  Score=129.76  Aligned_cols=96  Identities=20%  Similarity=0.178  Sum_probs=81.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCc---HHHHHHHHHcC-CCCCCCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK---KEAVRFLIENG-AFLPDDINDSRFN   85 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~Ll~~g-a~~~~~~~~~~g~   85 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..|+   .++++.|++.+ +++  +.++..|.
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~--g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~--~~~d~~g~  202 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM--GESCLVKAVKSVNNYDSGTFEALLDYLYPCL--ILEDSMNR  202 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT--CCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG--GEECTTCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHhcccccHHHHHHHHHhhhccc--cCCCCCCC
Confidence            4899999999999999999999999999999999888  9999999999988   67777777776 555  88999999


Q ss_pred             Ccccccccch--hhHHHHHHHHHHhh
Q 031810           86 PPLHYCPSLE--WAYEEMMRFQRESF  109 (152)
Q Consensus        86 tpl~~a~~~~--~~~~~~~~~l~~~~  109 (152)
                      ||||+|+...  .+..+++++|.+..
T Consensus       203 tpLh~A~~~~~~~g~~~~v~~Ll~~~  228 (327)
T 1sw6_A          203 TILHHIIITSGMTGCSAAAKYYLDIL  228 (327)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHccccccHHHHHHHHHHH
Confidence            9999998411  34467888777653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.78  E-value=3.7e-18  Score=120.39  Aligned_cols=96  Identities=24%  Similarity=0.277  Sum_probs=82.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      +..|.||||+|+..|+.+++++|++.|++++..+..  |.||||+|+..|+.+++++|+++|+++  +..+..|.||||+
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~  111 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN--GATPFLLAAIAGSVKLLKLFLSKGADV--NECDFYGFTAFME  111 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCT--TCBCTTCCBHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCcccCCHHHH
Confidence            677899999999999999999999999999888877  899999999999999999999999977  7888899999999


Q ss_pred             cccchhhHHHHHHHHHHhhcCC
Q 031810           91 CPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |+.  .++.+++++|.+.+...
T Consensus       112 A~~--~~~~~~~~~Ll~~g~~~  131 (285)
T 1wdy_A          112 AAV--YGKVKALKFLYKRGANV  131 (285)
T ss_dssp             HHH--TTCHHHHHHHHHTTCCT
T ss_pred             HHH--hCCHHHHHHHHHhCCCc
Confidence            984  44478888888876553

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.78  E-value=3.4e-18  Score=118.25  Aligned_cols=57  Identities=40%  Similarity=0.551  Sum_probs=21.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHc
Q 031810           13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN   71 (152)
Q Consensus        13 ~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   71 (152)
                      .|.||||+|+..|+.+++++|++.|++++..+..  |.||||+|+..++.+++++|++.
T Consensus        43 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~~~~Ll~~   99 (237)
T 3b7b_A           43 DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE--GSTCLHLAAKKGHYEVVQYLLSN   99 (237)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTT--SCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCC--CCcHHHHHHHcCCHHHHHHHHhC
Confidence            3333333333333333333333333333333332  33333333333333333333333

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.78  E-value=2.4e-18  Score=128.91  Aligned_cols=96  Identities=33%  Similarity=0.427  Sum_probs=79.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..|+.+++++|+++|+++  +..+..|.||||
T Consensus        43 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~t~L~  118 (437)
T 1n11_A           43 SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD--DQTPLHCAARIGHTNMVKLLLENNANP--NLATTAGHTPLH  118 (437)
T ss_dssp             SSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT--SCCHHHHHHHHTCHHHHHHHHHHTCCT--TCCCTTCCCHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC--CCCHHHHHHHCCCHHHHHHHHhCCCCC--CCCCCCCCcHHH
Confidence            4778889999999999999999999999888888877  889999999999999999999998877  778888888988


Q ss_pred             ccccchhhHHHHHHHHHHhhcC
Q 031810           90 YCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      +|+  ..+..+++++|.+....
T Consensus       119 ~A~--~~g~~~~v~~Ll~~~~~  138 (437)
T 1n11_A          119 IAA--REGHVETVLALLEKEAS  138 (437)
T ss_dssp             HHH--HHTCHHHHHHHHHTTCC
T ss_pred             HHH--HcCCHHHHHHHHhCCCC
Confidence            888  34446777777766543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.78  E-value=1.3e-19  Score=126.77  Aligned_cols=94  Identities=30%  Similarity=0.269  Sum_probs=84.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCC-CCCCCcccc
Q 031810           12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND-SRFNPPLHY   90 (152)
Q Consensus        12 ~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~-~~g~tpl~~   90 (152)
                      ..|.||||+|++.|+.++++.|++ |++++..+..  |+||||+|+..|+.+++++|+++|+++  +.++ ..|.||||+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~~g~t~L~~  117 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDEN--GRTALLFVAGLGSDKCVRLLAEAGADL--DHRDMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTT--SCBHHHHHHHHTCHHHHHHHHHTTCCT--TCCCSSSCCCHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHcCCCC--CcCCCCCCCCHHHH
Confidence            468999999999999999999999 9999999887  999999999999999999999999988  7777 789999999


Q ss_pred             cccchhhHHHHHHHHHHhhcCC
Q 031810           91 CPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |+.  .++.+++++|.+.+...
T Consensus       118 A~~--~g~~~~v~~Ll~~ga~~  137 (244)
T 3ui2_A          118 AAG--YVRPEVVEALVELGADI  137 (244)
T ss_dssp             HHH--TTCHHHHHHHHHTTCCT
T ss_pred             HHH--cCCHHHHHHHHHCCCCC
Confidence            994  44578999999886553

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.77  E-value=1.8e-18  Score=125.41  Aligned_cols=96  Identities=26%  Similarity=0.295  Sum_probs=77.3

Q ss_pred             CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQG---GHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP   86 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~---g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~t   86 (152)
                      .+..|.||||+|+..   +..+++++|++.|++++..+..  |+||||+|+..|+.+++++|+++|+++  +.+|..|.|
T Consensus       207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~--n~~d~~g~t  282 (351)
T 3utm_A          207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD--FMTPLHVAAERAHNDVMEVLHKHGAKM--NALDSLGQT  282 (351)
T ss_dssp             CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCC
T ss_pred             CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCC
Confidence            467788888888887   4468888888888888887776  888888888888888888888888877  778888888


Q ss_pred             cccccccchhhHHHHHHHHHHhhcC
Q 031810           87 PLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        87 pl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |||+|+  ..++.+++++|.+.+.+
T Consensus       283 ~L~~A~--~~~~~~~v~~Ll~~gad  305 (351)
T 3utm_A          283 ALHRAA--LAGHLQTCRLLLSYGSD  305 (351)
T ss_dssp             HHHHHH--HHTCHHHHHHHHHTTCC
T ss_pred             HHHHHH--HcCcHHHHHHHHHcCCC
Confidence            888887  44457788888887655

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.77  E-value=1.2e-18  Score=128.65  Aligned_cols=95  Identities=25%  Similarity=0.333  Sum_probs=86.7

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERG-ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      +|..|.||||+|+..|+.+++++|++.+ ++++..+..  |+||||+|+..|+.+++++|+++|+++  +.+|..|.|||
T Consensus       275 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~--g~TpL~~A~~~g~~~iv~~Ll~~gad~--~~~d~~g~t~l  350 (373)
T 2fo1_E          275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED--GKTPIMLAAQEGRIEVVMYLIQQGASV--EAVDATDHTAR  350 (373)
T ss_dssp             SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCSSSCCHH
T ss_pred             ccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--cCCCCCCCCHH
Confidence            4778999999999999999999999876 999999888  999999999999999999999999988  88999999999


Q ss_pred             cccccchhhHHHHHHHHHHhhc
Q 031810           89 HYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      |+|+  ..++.+++++|.+...
T Consensus       351 ~~A~--~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          351 QLAQ--ANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             HHHH--HTTCHHHHHHHHTTC-
T ss_pred             HHHH--HcCCHHHHHHHHhcCc
Confidence            9998  4455899999988764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.77  E-value=3.2e-18  Score=122.09  Aligned_cols=79  Identities=33%  Similarity=0.480  Sum_probs=75.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      .+..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..|+.+++++|+++|+++  +.+|..|.||||
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~--g~tpL~~A~~~~~~~~v~~Ll~~gad~--~~~d~~g~t~l~  270 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD--GWTPLHAAAHWGKEEACRILVENLCDM--EAVNKVGQTAFD  270 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCTTT
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCC--CCcHHHHHHhcCCHHHHHHHHHcCCCC--CCcCCCCCCHHH
Confidence            4678999999999999999999999999999999887  999999999999999999999999988  889999999999


Q ss_pred             ccc
Q 031810           90 YCP   92 (152)
Q Consensus        90 ~a~   92 (152)
                      +|+
T Consensus       271 ~A~  273 (299)
T 1s70_B          271 VAD  273 (299)
T ss_dssp             SCC
T ss_pred             HHH
Confidence            997

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.76  E-value=3.9e-18  Score=120.29  Aligned_cols=133  Identities=23%  Similarity=0.223  Sum_probs=91.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccccCCCCchHHHHHHhhCc----HHHHHHHHHcCCCCCCCCCCCCCC
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLER-GADIDARTKGACGWTPLHTAAKERK----KEAVRFLIENGAFLPDDINDSRFN   85 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~-~~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~ga~~~~~~~~~~g~   85 (152)
                      +..|.||||+|+..|+.+++++|++. |++++..+..  |+||||+|+..++    .+++++|++.|+++  +.++..|.
T Consensus       145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~--g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~--~~~~~~g~  220 (285)
T 1wdy_A          145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM--GRNALIHALLSSDDSDVEAITHLLLDHGADV--NVRGERGK  220 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTT--SCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS--SCCCTTSC
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCC--CCCHHHHHHHccccchHHHHHHHHHHcCCCC--CCcCCCCC
Confidence            66788888888888888888888876 8888877776  8888888888887    78888888888877  77788888


Q ss_pred             CcccccccchhhHHHHHHHHHH-hhcCC-CccCCchhhhHHHHHHhhhhhHHHhhhcCCccccccc
Q 031810           86 PPLHYCPSLEWAYEEMMRFQRE-SFSAG-ETSYSSEKLNALSRLLVHMMPLLWLDLASDAVLSVDH  149 (152)
Q Consensus        86 tpl~~a~~~~~~~~~~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  149 (152)
                      ||||+|+  ..++.+++++|.+ .+... .....+......+....+...+.++...+..+..+|+
T Consensus       221 t~L~~A~--~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          221 TPLILAV--EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CHHHHHH--HTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             cHHHHHH--HcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence            8888887  3344677777777 33322 1222222233333334555566666666666666654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.76  E-value=4.1e-18  Score=125.79  Aligned_cols=99  Identities=19%  Similarity=0.168  Sum_probs=80.4

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcC---CCCCCCCCCCCCC
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG---AFLPDDINDSRFN   85 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g---a~~~~~~~~~~g~   85 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |.||||+|+..|+.+++++|++.+   +++  +..+..|.
T Consensus       161 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~d~~g~  236 (373)
T 2fo1_E          161 AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS--ERSALHQAAANRDFGMMVYMLNSTKLKGDI--EELDRNGM  236 (373)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT--CCCHHHHHHHTTCHHHHHHHTTSHHHHHTT--SCCCTTSC
T ss_pred             CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCC--CCCHHHHHHHCCCHHHHHHHHhcCccccCh--hhcCCCCC
Confidence            34888999999999999999999999999999988877  889999999888888888888877   666  77788888


Q ss_pred             Ccccccccch-hhHHHHHHHHHHhhcC
Q 031810           86 PPLHYCPSLE-WAYEEMMRFQRESFSA  111 (152)
Q Consensus        86 tpl~~a~~~~-~~~~~~~~~l~~~~~~  111 (152)
                      ||||+|+..+ ....+++++|.+.+..
T Consensus       237 t~L~~A~~~~~~~~~~~v~~Ll~~g~~  263 (373)
T 2fo1_E          237 TALMIVAHNEGRDQVASAKLLVEKGAK  263 (373)
T ss_dssp             CHHHHHHHSCSTTHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHhCCcchHHHHHHHHHCCCC
Confidence            8888887432 1156777777777654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.75  E-value=3.1e-18  Score=124.40  Aligned_cols=100  Identities=24%  Similarity=0.294  Sum_probs=70.4

Q ss_pred             CCCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHc-CCCCC
Q 031810            2 DVNVAAWGPKSKGVTPLHLAAQGGH----LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN-GAFLP   76 (152)
Q Consensus         2 d~n~~~~~~d~~g~t~L~~a~~~g~----~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-ga~~~   76 (152)
                      |+|..    |..|.|++++++..+.    ..++++|++.|++++.++..  |+||||+|+..++.++++.|+.. |+++ 
T Consensus       194 d~n~~----d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~--g~t~L~~a~~~~~~~~v~~Ll~~~~~~v-  266 (337)
T 4g8k_A          194 DVNAC----DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER--GKTPLILAVEKKHLGLVQRLLEQEHIEI-  266 (337)
T ss_dssp             CTTCC----CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGG--GCCHHHHHHHTTCHHHHHHHHTSTTCCT-
T ss_pred             CcCcc----CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCC--CCCHHHHHHHhhhhHHHHHHHHhcCCcc-
Confidence            45554    6777888777665432    34667777888888777776  77888888888888887777764 6666 


Q ss_pred             CCCCCCCCCCcccccccchhhHHHHHHHHHHhhcC
Q 031810           77 DDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        77 ~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                       +.+|..|+||||+|+  ..++.+++++|++.+.+
T Consensus       267 -n~~d~~G~TpL~~A~--~~g~~~iv~~Ll~~GAd  298 (337)
T 4g8k_A          267 -NDTDSDGKTALLLAV--ELKLKKIAELLCKRGAS  298 (337)
T ss_dssp             -TCBCTTSCBHHHHHH--HTTCHHHHHHHHTTSCS
T ss_pred             -cCcCCCCCCHHHHHH--HcCCHHHHHHHHHCCCC
Confidence             777778888888887  33446777777776544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.72  E-value=1.2e-16  Score=110.05  Aligned_cols=97  Identities=22%  Similarity=0.274  Sum_probs=72.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      +|..|.||||+|+..|+.+++++|++.|++++..... .|+||||+|+..++.+++++|++.|+++  +..+..|.||||
T Consensus        38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~  114 (240)
T 3eu9_A           38 PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD-LNSTPLHWATRQGHLSMVVQLMKYGADP--SLIDGEGCSCIH  114 (240)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT-TTBCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHH
T ss_pred             CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCC-cCCChhHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHH
Confidence            4777888888888888888888888888777644322 2678888888888888888888888876  777778888888


Q ss_pred             ccccchhhHHHHHHHHHHhhcC
Q 031810           90 YCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      +|+..  +..+++++|.+.+..
T Consensus       115 ~A~~~--~~~~~~~~Ll~~~~~  134 (240)
T 3eu9_A          115 LAAQF--GHTSIVAYLIAKGQD  134 (240)
T ss_dssp             HHHHT--TCHHHHHHHHHTTCC
T ss_pred             HHHHc--CHHHHHHHHHhcCCC
Confidence            88733  346777777776544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.72  E-value=9.7e-18  Score=121.83  Aligned_cols=49  Identities=24%  Similarity=0.227  Sum_probs=27.7

Q ss_pred             ccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 031810           40 IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP   92 (152)
Q Consensus        40 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~   92 (152)
                      ++..+..  |+||||+|+..|+.+++++|+++|+++  +.+|..|+||||+|+
T Consensus       276 ~n~~d~~--G~TpLh~A~~~g~~~~v~~Ll~~Gad~--~~~d~~G~TpL~~A~  324 (327)
T 1sw6_A          276 LNAQDSN--GDTCLNIAARLGNISIVDALLDYGADP--FIANKSGLRPVDFGA  324 (327)
T ss_dssp             TTCCCTT--SCCHHHHHHHHCCHHHHHHHHHTTCCT--TCCCTTSCCGGGGTC
T ss_pred             CCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHH
Confidence            4444444  555666666555556666665555555  555555566665555

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.72  E-value=3.9e-17  Score=97.79  Aligned_cols=65  Identities=52%  Similarity=0.846  Sum_probs=61.1

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCC
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF   74 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~   74 (152)
                      +.+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|++
T Consensus        29 n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~--g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            345899999999999999999999999999999999888  99999999999999999999999974

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.71  E-value=1e-16  Score=110.52  Aligned_cols=99  Identities=22%  Similarity=0.209  Sum_probs=86.2

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      ..|..|.|||+.|+..|+.++++.|++.|++++..+..  |.||||+|+..|+.+++++|++.|++++ ...+..|.|||
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~t~L   80 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKE--NVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPL   80 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTTTBCHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCC--CCCHHHHHHHhCCHHHHHHHHHcCCcch-hhcCCcCCChh
Confidence            34888999999999999999999999999999998887  9999999999999999999999999873 34455699999


Q ss_pred             cccccchhhHHHHHHHHHHhhcCC
Q 031810           89 HYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |+|+  ..+..+++++|.+.+...
T Consensus        81 ~~A~--~~~~~~~v~~Ll~~g~~~  102 (240)
T 3eu9_A           81 HWAT--RQGHLSMVVQLMKYGADP  102 (240)
T ss_dssp             HHHH--HHTCHHHHHHHHHTTCCT
T ss_pred             HHHH--HcCCHHHHHHHHHcCCCC
Confidence            9998  444578999998876543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.71  E-value=1.1e-16  Score=116.25  Aligned_cols=93  Identities=27%  Similarity=0.363  Sum_probs=60.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCCchHHHHHHhhCc----HHHHHHHHHcCCCCCCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLE-RGADIDARTKGACGWTPLHTAAKERK----KEAVRFLIENGAFLPDDINDSRF   84 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~-~~~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~ga~~~~~~~~~~g   84 (152)
                      .+..|.||||+|+..|+.+++++|++ .|++++..+..  |.|++|.++..+.    ..++++|+++|+++  +.++..|
T Consensus       164 ~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~--g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~--n~~d~~g  239 (337)
T 4g8k_A          164 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM--GRNALIHALLSSDDSDVEAITHLLLDHGADV--NVRGERG  239 (337)
T ss_dssp             CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTT--SCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT--TCCCGGG
T ss_pred             ccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCC--CCcHHHHHHHHcCcccHHHHHHHHHHCCCCC--CCcCCCC
Confidence            35667777777777777777777774 46777776666  6777776654432    34667777777766  6667777


Q ss_pred             CCcccccccchhhHHHHHHHHHHh
Q 031810           85 NPPLHYCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        85 ~tpl~~a~~~~~~~~~~~~~l~~~  108 (152)
                      .||||+|+.  .+..+++++|.+.
T Consensus       240 ~t~L~~a~~--~~~~~~v~~Ll~~  261 (337)
T 4g8k_A          240 KTPLILAVE--KKHLGLVQRLLEQ  261 (337)
T ss_dssp             CCHHHHHHH--TTCHHHHHHHHTS
T ss_pred             CCHHHHHHH--hhhhHHHHHHHHh
Confidence            777777763  3335566666554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.68  E-value=1.1e-16  Score=118.20  Aligned_cols=96  Identities=25%  Similarity=0.192  Sum_probs=84.3

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 031810           13 KGVTPLHLAAQG-GHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC   91 (152)
Q Consensus        13 ~g~t~L~~a~~~-g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a   91 (152)
                      .+.|+||.|+.. ++.++++.|++.|++++..+....|+||||+|+..++.+++++|+++|+++  +..|..|.||||+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv--n~~d~~G~TpLh~A  275 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV--NQADSAGRGPLHHA  275 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHH
Confidence            356799999999 999999999999999998883223999999999999999999999999988  88999999999999


Q ss_pred             ccchhhHHHHHHHHHHhhcCC
Q 031810           92 PSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        92 ~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      +  ..++.+++++|++.+...
T Consensus       276 ~--~~g~~~~v~~LL~~Gad~  294 (368)
T 3jue_A          276 T--ILGHTGLACLFLKRGADL  294 (368)
T ss_dssp             H--HHTCHHHHHHHHHTTCCT
T ss_pred             H--HcCcHHHHHHHHHCcCCC
Confidence            8  444578999999886553

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.68  E-value=2.1e-17  Score=102.57  Aligned_cols=78  Identities=38%  Similarity=0.543  Sum_probs=69.7

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCC
Q 031810            7 AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP   86 (152)
Q Consensus         7 ~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~t   86 (152)
                      .+.+|..|.||||+|+..++.+++++|++.|++++..+..  |+||||+|+..++.+++++|+++|+++  +.++..|.+
T Consensus        35 ~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~--g~tpl~~A~~~~~~~~~~~Ll~~ga~~--n~~~~~~~~  110 (115)
T 2l6b_A           35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD--GNTPEHLAKKNGHHEIVKLLDAKGADV--NARSWGSSH  110 (115)
T ss_dssp             SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTT--CCCTTHHHHTTTCHHHHHHHHTTSSSH--HHHSCCCC-
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCC--CCCHHHHHHHCCCHHHHHHHHHcCCCC--CcCCccccc
Confidence            3345889999999999999999999999999999999887  999999999999999999999999988  888888888


Q ss_pred             cc
Q 031810           87 PL   88 (152)
Q Consensus        87 pl   88 (152)
                      |-
T Consensus       111 ~~  112 (115)
T 2l6b_A          111 HH  112 (115)
T ss_dssp             --
T ss_pred             cc
Confidence            74

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.65  E-value=6.2e-16  Score=111.33  Aligned_cols=93  Identities=22%  Similarity=0.217  Sum_probs=81.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccc------cccCCCCchHHHHHHhh---CcHHHHHHHHHcCCCCCCCCCCCCC
Q 031810           14 GVTPLHLAAQGGHLEVMDVLLERGADIDA------RTKGACGWTPLHTAAKE---RKKEAVRFLIENGAFLPDDINDSRF   84 (152)
Q Consensus        14 g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~------~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~ga~~~~~~~~~~g   84 (152)
                      +.++|+.|+..|+.+.++.|++.|++++.      .+..  |+||||+|+..   ++.+++++|++.|+++  +.+|..|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~--g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv--n~~d~~G  226 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAP--EELVLHLAVKVANQASLPLVDFIIQNGGHL--DAKAADG  226 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSC--EECHHHHHHHTCCTTTHHHHHHHHHHSSCT--TCCCTTC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCC--CccHHHHHHHhcccCcHHHHHHHHhcCCCC--CCCCCCC
Confidence            45679999999999999999999999987      4655  99999999997   8999999999999988  8899999


Q ss_pred             CCcccccccchhhHHHHHHHHHHhhcCC
Q 031810           85 NPPLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        85 ~tpl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      .||||+|+.  .++.+++++|++.+.+.
T Consensus       227 ~TpLh~A~~--~g~~~~v~~Ll~~gad~  252 (301)
T 2b0o_E          227 NTALHYAAL--YNQPDCLKLLLKGRALV  252 (301)
T ss_dssp             CCHHHHHHH--TTCHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHH--cCCHHHHHHHHHcCCCC
Confidence            999999994  44578999999886653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.62  E-value=3.8e-15  Score=106.10  Aligned_cols=92  Identities=21%  Similarity=0.239  Sum_probs=79.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccc------cccCCCCchHHHHHHhh---CcHHHHHHHHHcCCCCCCCCCCCCCC
Q 031810           15 VTPLHLAAQGGHLEVMDVLLERGADIDA------RTKGACGWTPLHTAAKE---RKKEAVRFLIENGAFLPDDINDSRFN   85 (152)
Q Consensus        15 ~t~L~~a~~~g~~~~~~~Ll~~~~~~~~------~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~ga~~~~~~~~~~g~   85 (152)
                      .++|+.|+..|+.+.+..+++.|++++.      .+..  |+||||+|+..   ++.+++++|+++|+++  +.+|..|.
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~--g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i--n~~d~~g~  206 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEP--DETALHLAVRSVDRTSLHIVDFLVQNSGNL--DKQTGKGS  206 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSST--TCBHHHHHHHHCCTTTHHHHHHHHHHCSCT--TCCCTTCC
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccC--CCCcchHHHHhcccchHHHHHHHHHCCCCc--cccCCCCC
Confidence            4689999999999999999999998553      3555  99999999999   8999999999999988  88999999


Q ss_pred             CcccccccchhhHHHHHHHHHHhhcCC
Q 031810           86 PPLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        86 tpl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      ||||+|+.  .++.+++++|.+.+.+.
T Consensus       207 TpLh~A~~--~g~~~~v~~Ll~~gad~  231 (278)
T 1dcq_A          207 TALHYCCL--TDNAECLKLLLRGKASI  231 (278)
T ss_dssp             CHHHHHHH--TTCHHHHHHHHHTTCCT
T ss_pred             CHHHHHHH--cCCHHHHHHHHHcCCCC
Confidence            99999994  44578999999877653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.57  E-value=5.4e-17  Score=120.17  Aligned_cols=91  Identities=15%  Similarity=0.214  Sum_probs=66.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---cccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCC--CCCCCC
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADI---DARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDI--NDSRFN   85 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~---~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~--~~~~g~   85 (152)
                      +..|.||||+|+..|+.+++++|++.|+++   +..+.   ++||||+|+..|+.+++++|+++|+++  ..  .+..|.
T Consensus       125 ~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~---~~TpLh~Aa~~G~~eiv~~Ll~~ga~~--~~~~~d~~g~  199 (376)
T 2aja_A          125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE---NYHAFRLAAENGHLHVLNRLCELAPTE--ATAMIQAENY  199 (376)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH---HHHHHHHHHHTTCHHHHHHHHHSCGGG--HHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC---CCCHHHHHHHCCCHHHHHHHHHcCCcc--chhccCCCCC
Confidence            445778888888888888888888888652   22222   368888888888888888888888865  44  666778


Q ss_pred             Ccccccc-cchhhHHHHHHHHHHh
Q 031810           86 PPLHYCP-SLEWAYEEMMRFQRES  108 (152)
Q Consensus        86 tpl~~a~-~~~~~~~~~~~~l~~~  108 (152)
                      ||||+|+ ..+.  .+++++|.+.
T Consensus       200 TpL~~Aa~~~G~--~eiv~~Ll~~  221 (376)
T 2aja_A          200 YAFRWAAVGRGH--HNVINFLLDC  221 (376)
T ss_dssp             HHHHHHHSTTCC--HHHHHHHTTS
T ss_pred             CHHHHHHHHCCC--HHHHHHHHhC
Confidence            8888887 5444  5677666653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.51  E-value=6.8e-14  Score=86.15  Aligned_cols=58  Identities=41%  Similarity=0.649  Sum_probs=54.8

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHH
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL   68 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   68 (152)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..  |+||||+|+..++.+++++|
T Consensus        52 ~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~--g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           52 AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF--GKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccC--CCcHHHHHHHcCCHHHHHHh
Confidence            34889999999999999999999999999999999887  99999999999999999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.47  E-value=4e-15  Score=110.15  Aligned_cols=96  Identities=14%  Similarity=0.002  Sum_probs=72.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---cccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCC-CCCCCCCCCC
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADI---DARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLP-DDINDSRFNP   86 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~---~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~-~~~~~~~g~t   86 (152)
                      +..+.||||+|++.|+.+++++|++.|+..   +..+..  |.||||+|+..|+.+++++|+++|+++. .+..+.+ .|
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~--~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~T  165 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE--NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YH  165 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHH--HHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccC--CCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CC
Confidence            445679999999999999999999998722   122334  7899999999999999999999997521 0223333 89


Q ss_pred             cccccccchhhHHHHHHHHHHhhcC
Q 031810           87 PLHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        87 pl~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      |||+|+  ..++.+++++|.+.+..
T Consensus       166 pLh~Aa--~~G~~eiv~~Ll~~ga~  188 (376)
T 2aja_A          166 AFRLAA--ENGHLHVLNRLCELAPT  188 (376)
T ss_dssp             HHHHHH--HTTCHHHHHHHHHSCGG
T ss_pred             HHHHHH--HCCCHHHHHHHHHcCCc
Confidence            999999  44558999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	152
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.001
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 3e-18
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
          TPLH+A+  GHL ++  LL+RGA  +         TPLH AA+    E  ++L++N A +
Sbjct: 2  TPLHVASFMGHLPIVKNLLQRGASPNVSNV--KVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 76 PDDINDSRFNPPLHYC 91
            +        PLH  
Sbjct: 60 --NAKAKDDQTPLHCA 73

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 1e-14
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
            K  TPLH+AA+ GH EV   LL+  A ++A+ K     TPLH AA+      V+ L+EN
Sbjct: 31  VKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK--DDQTPLHCAARIGHTNMVKLLLEN 88

Query: 72  GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
            A              +            ++  
Sbjct: 89  NANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 3e-13
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
             G +PLH AAQ GH +++ +LL+ GA  +  +    G TPL  A +         L
Sbjct: 328 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD--GTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 3e-11
 Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G TPLH+AA+ G + V ++LLER A  +A  K   G TPLH A      + V+ L+  G 
Sbjct: 132 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN--GLTPLHVAVHHNNLDIVKLLLPRGG 189

Query: 74  FLPDDINDSRFNPPLHYCPSLEWAYEEMM 102
                        PLH             
Sbjct: 190 SP--HSPAWNGYTPLHIAAKQNQVEVARS 216

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 1e-10
 Identities = 37/142 (26%), Positives = 53/142 (37%), Gaps = 39/142 (27%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDART--------------------------- 44
             G+TPLHL AQ GH+ V DVL++ G  +DA T                           
Sbjct: 262 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 321

Query: 45  ----KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAY 98
               K   G++PLH AA++   + V  L++NGA      N   S    PL    +    Y
Sbjct: 322 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA----SPNEVSSDGTTPLAI--AKRLGY 375

Query: 99  EEMMRFQRESFSAGETSYSSEK 120
             +    +           S+K
Sbjct: 376 ISVTDVLKVVTDETSFVLVSDK 397

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
             G+TPLH+A    +L+++ +LL RG    +      G+TPLH AAK+ + E  R L++ 
Sbjct: 163 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW--NGYTPLHIAAKQNQVEVARSLLQY 220

Query: 72  GAFLPDDINDSRFNPPLHYC 91
                 +    +   PLH  
Sbjct: 221 --GGSANAESVQGVTPLHLA 238

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 5e-08
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 8   WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 67
                +GVTPLHLAAQ GH E++ +LL + A+ +   K   G TPLH  A+E        
Sbjct: 225 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK--SGLTPLHLVAQEGHVPVADV 282

Query: 68  LIENGAFLPDDINDSRFNPPLHYCPSLEWAY 98
           LI++G  +  D        PLH         
Sbjct: 283 LIKHGVMV--DATTRMGYTPLHVASHYGNIK 311

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 27/111 (24%), Positives = 36/111 (32%), Gaps = 33/111 (29%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDAR---------------------------- 43
               TPLH AA+ GH  ++ +LLE  A+ +                              
Sbjct: 64  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 123

Query: 44  ---TKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC 91
                   G+TPLH AAK  K      L+E  A    +        PLH  
Sbjct: 124 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP--NAAGKNGLTPLHVA 172

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 74.9 bits (183), Expect = 2e-17
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 1/93 (1%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           ++      LAA+ GHL V++ L E           A  +     AA+      +  L E 
Sbjct: 124 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL 183

Query: 72  GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
                  +  +       +       +  ++ F
Sbjct: 184 APTEATAMIQAENYYAFRWAAV-GRGHHNVINF 215

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 69.2 bits (168), Expect = 3e-15
 Identities = 11/82 (13%), Positives = 19/82 (23%), Gaps = 5/82 (6%)

Query: 13  KGVTPLHLAAQGGHLEVMDV---LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
           K      +AA  G    +D    LL     +         +     AA+      +  L 
Sbjct: 89  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE--NYQAFRLAAENGHLHVLNRLC 146

Query: 70  ENGAFLPDDINDSRFNPPLHYC 91
           E        +  +         
Sbjct: 147 ELAPTEIMAMIQAENYHAFRLA 168

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.1 bits (129), Expect = 5e-10
 Identities = 8/62 (12%), Positives = 14/62 (22%), Gaps = 3/62 (4%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC---GWTPLHTAAKERKKEAVRFLIE 70
            +  L        L+ +  LL                     L  A +   + A   L+ 
Sbjct: 279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

Query: 71  NG 72
             
Sbjct: 339 IP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 50.3 bits (119), Expect = 1e-08
 Identities = 11/80 (13%), Positives = 18/80 (22%), Gaps = 11/80 (13%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
                 L+   G  ++               +G      L     E   + +RFL+    
Sbjct: 252 MHDAFKLSNPDGVFDL--------VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPG 303

Query: 74  ---FLPDDINDSRFNPPLHY 90
                P        N  L  
Sbjct: 304 IKALAPTATIPGDANELLRL 323

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.9 bits (105), Expect = 8e-07
 Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 1/108 (0%)

Query: 7   AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADI-DARTKGACGWTPLHTAAKERKKEAV 65
               +++      LAA+ GHL V++ L E       A  +    +     A        +
Sbjct: 154 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 213

Query: 66  RFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 113
            FL++    L             +  P +      +         +  
Sbjct: 214 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNP 261

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.0 bits (82), Expect = 8e-04
 Identities = 10/92 (10%), Positives = 21/92 (22%), Gaps = 14/92 (15%)

Query: 11  KSKGVTPLHLAAQGGHLEVMDVLLERGADIDART---------KGACGWTPLHTAAKE-- 59
             K    + L       +V  +L    A  +            KG         AA    
Sbjct: 43  SYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGC 102

Query: 60  -RKKEAVRFLIENGAFLPDDINDSRFNPPLHY 90
               + +  L+ +   +   +  +        
Sbjct: 103 SSALDTLCLLLTSDEIV--KVIQAENYQAFRL 132

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.8 bits (156), Expect = 7e-14
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 8   WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 67
                 G TP+ LAAQ G +EV+  L+++GA ++A        T    A        V  
Sbjct: 215 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA--TDHTARQLAQANNHHNIVDI 272

Query: 68  LIE 70
              
Sbjct: 273 FDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.1 bits (118), Expect = 1e-08
 Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 10/97 (10%)

Query: 16  TPLHLAAQ-GGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 74
           +P+ L  +  G   + + +     +I          T LH  A     E    LI + A 
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNI---IDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 75  LPD----DIN--DSRFNPPLHYCPSLEWAYEEMMRFQ 105
                  D+N  D   N PL                +
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK 95

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.8 bits (99), Expect = 4e-06
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           KG T LH AAQ  ++ ++  L+          +   G TP+  AA+E + E V +LI+ G
Sbjct: 186 KGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 244

Query: 73  AFLPDDIN--DSRFNPPLHY 90
           A     +   D+  +     
Sbjct: 245 A----SVEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.9 bits (94), Expect = 2e-05
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 10/49 (20%)

Query: 14 GVTPLHLAAQGGHLEVMDVLL--------ERGADIDARTKGACGWTPLH 54
            T LH  A     E  + L+          GAD++A        TPL 
Sbjct: 33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC--DENTPLM 79

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 1e-13
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLER-GADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
           +G TPL LA +  HL ++  LLE+   +I+       G T L  A + + K+    L + 
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS--DGKTALLLAVELKLKKIAELLCKR 275

Query: 72  GAFLPDDIN 80
           GA      +
Sbjct: 276 GA----STD 280

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 1e-11
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 13  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
           +    L  A Q   ++++  LLE GA+++ + +   GWTPLH A +  +++ V  L+ +G
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE-EGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 73  AFLPDDINDSRFNPPLHYCPSLEWAYEEMMR 103
           A       +      L          +  + 
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 6e-09
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLL-ERGADIDARTK-GACGWTPLHTAAKERKKEAV-RFLIE 70
           G T L  AA+ GH+EV+ +LL E GAD++A    G         ++ +   EA+   L++
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 71  NGAFLPDDIN--DSRFNPPLHYCPS 93
           +GA    D+N    R   PL     
Sbjct: 208 HGA----DVNVRGERGKTPLILAVE 228

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 6e-08
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDAR 43
           S G T L LA +    ++ ++L +RGA  D  
Sbjct: 251 SDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 3e-13
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 16  TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
           TPLHLA +     V+++LL+ GAD  AR     G TPL +A         R L  +GA  
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMY--GGRTPLGSALLRPNPILARLLRAHGAPE 251

Query: 76  PDD 78
           P+D
Sbjct: 252 PED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (133), Expect = 8e-11
 Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 1/140 (0%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDAR-TKGACGWTPLHTAAKERKKEAVRFLIENG 72
           G T LHLA    H   +D LL   A  +    +   G T LH AA   +   V  L   G
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 73  AFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMM 132
           A +            L            +++ +         +Y ++  +          
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 133 PLLWLDLASDAVLSVDHHYK 152
            +       +     D  ++
Sbjct: 129 AVDSQPNPENEEEPRDEDWR 148

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 1e-05
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADID 41
             G TPL  A    +  +  +L   GA   
Sbjct: 223 YGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 5e-04
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
             G T LHLAA  G    ++ L               G T LH A + R       L++ 
Sbjct: 43  DLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGGHTALHLACRVRAHTCACVLLQP 100

Query: 72  GAFLPDDINDSRFNPPLHYCP 92
               P D +D+         P
Sbjct: 101 RPSHPRDASDTYLTQSQDCTP 121

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.3 bits (142), Expect = 7e-12
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAA 57
           S G T L++AA+ G++ ++D LL+ GAD     K   G  P+   A
Sbjct: 257 SNGDTCLNIAARLGNISIVDALLDYGADPFIANK--SGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.4 bits (124), Expect = 2e-09
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
             G TPLH      +LE++  L++ G++         G + L  A K             
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN--MGESCLVKAVKSVNNYDSGTFEAL 162

Query: 72  GAFLPDDIN--DSRFNPPLHYC 91
             +L   +   DS     LH+ 
Sbjct: 163 LDYLYPCLILEDSMNRTILHHI 184

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.0 bits (123), Expect = 2e-09
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 11/84 (13%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLER---GADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
           ++  +  +         +++ L  +      ++A+     G T L+ AA+      V  L
Sbjct: 221 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS--NGDTCLNIAARLGNISIVDAL 278

Query: 69  IENGAFLPDDIN--DSRFNPPLHY 90
           ++ GA    D    +     P+ +
Sbjct: 279 LDYGA----DPFIANKSGLRPVDF 298

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.4 bits (137), Expect = 4e-11
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 62
             G TPLH AA  G  E   +L+E   D++A  K   G T    A ++   
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK--VGQTAFDVADEDILG 278

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.0 bits (136), Expect = 5e-11
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
           G T LH+AA  G+ EV+ +L++   D++ +     GWTPLH AA   K+EA R L+EN  
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDY--DGWTPLHAAAHWGKEEACRILVENLC 256

Query: 74  FLPDDIN--DSRFNPPLHYC 91
               D+   +          
Sbjct: 257 ----DMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.2 bits (113), Expect = 6e-08
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 11  KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
           K         A   G  E +  LLERGADI+       G T LH A  +   + V+FL+E
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANV--DGLTALHQACIDDNVDMVKFLVE 94

Query: 71  NGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
           NGA +    N+                 E ++  
Sbjct: 95  NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 1e-09
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 8   WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVR 66
                 G + LH A+  G L ++  L+  GAD   +       TPL  A   R  + +R
Sbjct: 171 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC--HNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 1e-07
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 14 GVTPLHLAAQGGHLEVMDVLL----ERGADIDARTKGACGWTPLHTA 56
          G TPLH+A   G+L  +  L+    + G ++D         TPLH A
Sbjct: 3  GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN--LRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 5e-05
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 49  GWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMM 102
           G TPLH A  +    AV  L+        +++  ++    PLH            +
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 58

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 17  PLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLP 76
           PL  A +   L ++ +LL+ GA+++A+     G + LH+A+       VR L+ +GA   
Sbjct: 147 PLIHAVENNSLSMVQLLLQHGANVNAQMY--SGSSALHSASGRGLLPLVRTLVRSGA--- 201

Query: 77  DDIN--DSRFNPPLHY 90
            D +  +   + PL  
Sbjct: 202 -DSSLKNCHNDTPLMV 216

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 3e-09
 Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 3/91 (3%)

Query: 16  TPLHLAAQGGHLEVMDVLLE-RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 74
            PLH A        +  LL  + + +  + +   G  PLH +   +  E   FL+     
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQ--DGRIPLHWSVSFQAHEITSFLLSKMEN 59

Query: 75  LPDDINDSRFNPPLHYCPSLEWAYEEMMRFQ 105
           +  D           +        E +    
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 90

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 3e-08
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 8   WGPKSKGVTPLHLAAQGGHLEVMDVLLER-GADIDARTKGACGWTPLHTAAKERKKEAVR 66
                +G TPL  A   GH +   +L+E+ GA+ D       G      A  E   +  +
Sbjct: 166 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN--KGAKAEDVALNE---QVKK 220

Query: 67  FLIENGA 73
           F + N  
Sbjct: 221 FFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 8   WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 67
                    PLH AA  G L+++++L   G       +   GWTPL  A  E   +A   
Sbjct: 132 RIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQGWTPLFHALAEGHGDAAVL 190

Query: 68  LIEN-GAFLPDDINDSRFNPPLHYCPSLE 95
           L+E  GA    D+ D++         + +
Sbjct: 191 LVEKYGAEY--DLVDNKGAKAEDVALNEQ 217

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
           ++G TPLHLA     +E   +L+ +GA I    K     TPL   AK      ++ ++E
Sbjct: 167 TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKE--EKTPLQ-VAKGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 3e-08
 Identities = 29/110 (26%), Positives = 39/110 (35%), Gaps = 33/110 (30%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDART--------------------------- 44
             G TPLH AA     E+  +LLE GA+ DA+                            
Sbjct: 101 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 160

Query: 45  ----KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 90
               +   G TPLH A  E + E  + L+  GA +   I +     PL  
Sbjct: 161 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI--YIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 37/124 (29%)

Query: 12  SKGVTPLHLAAQGG---------------------------------HLEVMDVLLERGA 38
               T LH A   G                                   E++  LL +GA
Sbjct: 35  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 94

Query: 39  DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAY 98
            ++A  +   G TPLH AA + + E    L+E GA    D  D      +H   +     
Sbjct: 95  QVNAVNQN--GCTPLHYAASKNRHEIAVMLLEGGANP--DAKDHYEATAMHRAAAKGNLK 150

Query: 99  EEMM 102
              +
Sbjct: 151 MIHI 154

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 5e-04
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)

Query: 18 LHLAAQGGHLE-VMDVLLERGADIDARTKGACGWTPLHTAAK 58
          +   A  G LE + + +L   +      +     T LH A  
Sbjct: 7  VCNLAYSGKLEELKESILADKSLATRTDQD--SRTALHWACS 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 7e-08
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 8   WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 67
                 G T LHLA    + +++ +LL+ GAD++  T    G++P             + 
Sbjct: 139 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY--QGYSPYQLTWGRPSTRIQQQ 196

Query: 68  LIENGA 73
           L +   
Sbjct: 197 LGQLTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 3e-07
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 6/94 (6%)

Query: 14  GVTPLHLAAQGGH----LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
           G + LHLA         +EV+  +    A ++ +       TPLH A    + E    L+
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN--LQQTPLHLAVITNQPEIAEALL 59

Query: 70  ENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMR 103
             G               L        +   + +
Sbjct: 60  GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ 93

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 2e-04
 Identities = 4/34 (11%), Positives = 9/34 (26%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
            +G +P  L        +   L +   +      
Sbjct: 176 YQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 6e-04
 Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 2/59 (3%)

Query: 49  GWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRFQ 105
           G + LH A    +K     +I         +N  ++    PLH                
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.9 bits (107), Expect = 2e-07
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 16  TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
           TPL LAA+ G  E    LL+  A+ +          P   A++    + VR L
Sbjct: 158 TPLFLAAREGSYEASKALLDNFANREITDH--MDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.6 bits (106), Expect = 3e-07
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 28  EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP 87
           +V+  LL +GA+++A      G T LH AA+  + +A + L++ GA      N  R    
Sbjct: 3   QVISDLLAQGAELNATM-DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 61

Query: 88  LHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLW 136
                     ++ ++R +  + +A     ++  + A    +  M+  L 
Sbjct: 62  AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 110

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 3e-06
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 42/112 (37%)

Query: 12  SKGVTPLHLAAQ---GGHLEVMDVLLERGADIDARTKGAC-------------------- 48
               T LHLA +      L ++D L++   ++D +T                        
Sbjct: 43  EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 102

Query: 49  -----------GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 89
                      G TPL  A + + +     L +  +         RFN  +H
Sbjct: 103 GKASIEIANESGETPLDIAKRLKHEHCEELLTQALS--------GRFNSHVH 146

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 1e-04
 Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 14  GVTPLHLAAQGGHLEVMDVLLERGAD-IDARTKGACGWTPL 53
           G TPL +A +  H    ++L +  +   ++       W  L
Sbjct: 114 GETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWRLL 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 9e-06
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLH 54
            L  AA  G LE +  LL+   +++A+         + 
Sbjct: 3  NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM 41

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 2e-04
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLERG 37
            KG T   LA   G  EV+ ++   G
Sbjct: 131 HKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 0.002
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 45  KGACGWTPLHTAAKERKKEAVRFLIENG 72
           +   G T    A    + E V  +  NG
Sbjct: 129 RNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (93), Expect = 1e-05
 Identities = 8/39 (20%), Positives = 13/39 (33%)

Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLH 54
            L  AA+ G  + + +L+  GA       G        
Sbjct: 4  KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAA 42

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.8 bits (78), Expect = 0.001
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 8   WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 67
                  +T LH A +  H EV+++L++ GAD+  ++K     T    +     ++    
Sbjct: 94  NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK--FCKTAFDISIDNGNEDLAEI 151

Query: 68  L 68
           L
Sbjct: 152 L 152

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 1e-04
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 8   WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART-KGACGWTPLHTAAKERKKEAVR 66
               S G TPLH AA   +++V   L+E GA + A T              +E   +  +
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 67  FLIENGA 73
           FL     
Sbjct: 121 FLYGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 32/120 (26%)

Query: 16  TPLHLAAQGGHLEVMDVLLERGADIDARTKGA---------------------------- 47
             L  ++  G  +++  ++    D                                    
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 48  ---CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
               GWTPLH AA     +  +FL+E+GA     +  S        C  +E  Y +  +F
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.002
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 12  SKGVTPLHLAAQGGHLEVMDVLLE 35
           ++G+TPL LA Q G  +++D+L  
Sbjct: 131 ARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.002
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 35  ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
              +D+  R     G TPL  A +   ++ V  L  
Sbjct: 121 AAESDLHRRDA--RGLTPLELALQRGAQDLVDILQG 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.86
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.83
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.83
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.81
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.8
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.79
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.79
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.79
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.78
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.78
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.77
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.76
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.76
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.75
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.75
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.73
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.71
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.7
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.69
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.68
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.68
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.65
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.65
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.64
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.64
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.63
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.6
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.59
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.58
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.56

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1e-22  Score=131.96  Aligned_cols=97  Identities=23%  Similarity=0.358  Sum_probs=87.3

Q ss_pred             CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQG---GHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP   86 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~---g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~t   86 (152)
                      .+..|+||||+|++.   +..+++++|+++|++++.++..  |+||||+|+..|+.+++++|+++|+++  +.+|..|.|
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~--g~TpLh~A~~~~~~~~v~~Ll~~gad~--~~~d~~g~t  116 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK--GSTALHYCCLTDNAECLKLLLRGKASI--EIANESGET  116 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCC
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhh--hccccccccccccccccccccccCccc--cccCCCCCC
Confidence            367799999999974   6789999999999999999988  999999999999999999999999988  889999999


Q ss_pred             cccccccchhhHHHHHHHHHHhhcCC
Q 031810           87 PLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        87 pl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      |||+|+  ..++.+++++|.+.....
T Consensus       117 pL~~A~--~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1         117 PLDIAK--RLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHH--HTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHH--HcCCHHHHHHHHHhCCCC
Confidence            999998  445589999999887653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-22  Score=127.99  Aligned_cols=87  Identities=24%  Similarity=0.293  Sum_probs=41.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchh
Q 031810           17 PLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEW   96 (152)
Q Consensus        17 ~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~   96 (152)
                      +|+.|+..|+.++++.|++.|++++.++.+  |+||||+|+..++.+++++|++.|+++  +.+|.+|+||||+|+  ..
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~--g~t~Lh~A~~~~~~~~~~~ll~~g~~~--~~~d~~g~tpLh~A~--~~   77 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPSLPNDE--GITALHNAVCAGHTEIVKFLVQFGVNV--NAADSDGWTPLHCAA--SC   77 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCCCCCTT--SCCHHHHHHHHTCHHHHHHHHHHTCCT--TCCCTTCCCHHHHHH--HT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccc--ccccccccccccccccccccccccccc--ccccccCcccccccc--hh
Confidence            344444455555555555544444444444  445555555555555555555444444  444444455555544  22


Q ss_pred             hHHHHHHHHHHhh
Q 031810           97 AYEEMMRFQRESF  109 (152)
Q Consensus        97 ~~~~~~~~l~~~~  109 (152)
                      ++.+++++|.+.+
T Consensus        78 g~~~~v~~Ll~~g   90 (130)
T d1ycsb1          78 NNVQVCKFLVESG   90 (130)
T ss_dssp             TCHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHcC
Confidence            2244444444443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=2.7e-22  Score=124.49  Aligned_cols=91  Identities=22%  Similarity=0.303  Sum_probs=69.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccc
Q 031810           15 VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSL   94 (152)
Q Consensus        15 ~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~   94 (152)
                      .|||++|++.|+.++++.|++.|++++..+..  |+||||+|+..++.+++++|++.|+++  +.+|..|+||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~--g~t~lh~A~~~~~~~~~~~ll~~g~di--n~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG--GRKPLHYAADCGQLEILEFLLLKGADI--NAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSS--SCCTTHHHHHHSTTTHHHHHHHSSCTT--TCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccccc--cccccccccccccccccccccccccee--eecccccccchhhhhhc
Confidence            47888888888888888888888888777766  788888888888888888888888776  67777888888888743


Q ss_pred             hhhHHHHHHHHHHhhcC
Q 031810           95 EWAYEEMMRFQRESFSA  111 (152)
Q Consensus        95 ~~~~~~~~~~l~~~~~~  111 (152)
                        ++.+++++|.+.+.+
T Consensus        79 --~~~~~v~~Ll~~Gad   93 (118)
T d1myoa_          79 --GHVSCVKLLLSKGAD   93 (118)
T ss_dssp             --TCCHHHHHHHTTCCC
T ss_pred             --Cchhhhhhhhccccc
Confidence              346777777776544

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=4.7e-22  Score=123.38  Aligned_cols=82  Identities=33%  Similarity=0.418  Sum_probs=77.0

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCC
Q 031810            7 AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP   86 (152)
Q Consensus         7 ~~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~t   86 (152)
                      .+.+|..|+||||+|+..|+.+++++|++.|++++.++..  |+||||+|+..|+.+++++|+++|+++  +.+|..|.|
T Consensus        28 ~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~--g~tpLh~A~~~~~~~~v~~Ll~~Gad~--~~~d~~G~t  103 (118)
T d1myoa_          28 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH--HITPLLSAVYEGHVSCVKLLLSKGADK--TVKGPDGLT  103 (118)
T ss_dssp             CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSS--CSCHHHHHHTTTCCHHHHHHHTTCCCS--SSSSSSTCC
T ss_pred             cccccccccccccccccccccccccccccccceeeecccc--cccchhhhhhcCchhhhhhhhcccccc--eeeCCCCCC
Confidence            3445899999999999999999999999999999999888  999999999999999999999999988  899999999


Q ss_pred             cccccc
Q 031810           87 PLHYCP   92 (152)
Q Consensus        87 pl~~a~   92 (152)
                      |||+|.
T Consensus       104 ~l~~a~  109 (118)
T d1myoa_         104 ALEATD  109 (118)
T ss_dssp             CCCTCS
T ss_pred             HHHHHh
Confidence            999995

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.8e-21  Score=122.68  Aligned_cols=99  Identities=30%  Similarity=0.514  Sum_probs=85.6

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCC-CCCCC
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND-SRFNP   86 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~-~~g~t   86 (152)
                      +.+|.+|+||||+|+..|+.+++++|++.|++++..|.+  |+||||+|+..|+.+++++|+++|+++  +..+ ..++|
T Consensus        28 n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~--g~tpLh~A~~~g~~~~v~~Ll~~ga~v--~~~~~~~~~~  103 (130)
T d1ycsb1          28 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD--GWTPLHCAASCNNVQVCKFLVESGAAV--FAMTYSDMQT  103 (130)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCSSSCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccc--CcccccccchhhHHHHHHHHHHcCCCc--ccccCCCCCC
Confidence            345899999999999999999999999999999999988  999999999999999999999999988  5444 45888


Q ss_pred             cccccccchhhHHHHHHHHHHhhc
Q 031810           87 PLHYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        87 pl~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      |++++.....++.+++++|.....
T Consensus       104 ~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1         104 AADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcChHHHHHHHHhHHH
Confidence            877765445566789999987653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1e-21  Score=123.01  Aligned_cols=87  Identities=22%  Similarity=0.251  Sum_probs=40.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCC-Ccccccccc
Q 031810           16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFN-PPLHYCPSL   94 (152)
Q Consensus        16 t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~-tpl~~a~~~   94 (152)
                      ++||+|++.|+.+++++|++.|++++..+..  |.||+|+|+ .|+.+++++|+++|+++  +.++..+. ||||+|+  
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~--g~t~l~~a~-~g~~~~v~~Ll~~ga~~--~~~~~~~~~~~L~~A~--   77 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANPNAPNSY--GRRPIQVMM-MGSARVAELLLLHGAEP--NCADPATLTRPVHDAA--   77 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCTTCCCSS--SCCTTTSSC-TTCHHHHHHHHTTTCCC--CCCCTTTCCCHHHHHH--
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCcccccccc--ccccccccc-ccccccccccccccccc--cccccccccccccccc--
Confidence            4455555555555555555555555444444  445554332 34445555555555444  33444333 3455554  


Q ss_pred             hhhHHHHHHHHHHhh
Q 031810           95 EWAYEEMMRFQRESF  109 (152)
Q Consensus        95 ~~~~~~~~~~l~~~~  109 (152)
                      ..++.+++++|.+.+
T Consensus        78 ~~g~~~~v~~Ll~~g   92 (125)
T d1bi7b_          78 REGFLDTLVVLHRAG   92 (125)
T ss_dssp             HHTCHHHHHHHHHHT
T ss_pred             ccccccccccccccc
Confidence            222244444444443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=2e-20  Score=129.16  Aligned_cols=99  Identities=25%  Similarity=0.328  Sum_probs=87.2

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +.+|..|.||||+|+..++.+++++|++.+++.+..+. ..|.||||+|+..++.+++++|+++|+++  +.+|..|.||
T Consensus       152 n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~TpL~~A~~~~~~~~v~~Ll~~gadi--n~~d~~g~t~  228 (255)
T d1oy3d_         152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP-TCGRTPLHLAVEAQAASVLELLLKAGADP--TARMYGGRTP  228 (255)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCH
T ss_pred             ccccccCcccccccccccccccccchhccccccccccc-ccccccccccccccHHHHHHHHHHCCCCC--CCCCCCCCCH
Confidence            34589999999999999999999999999998875432 23899999999999999999999999988  8899999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~  111 (152)
                      ||+|+..  ++.+++++|++.+.+
T Consensus       229 L~~A~~~--~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         229 LGSALLR--PNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHTS--SCHHHHHHHHHTTCC
T ss_pred             HHHHHHC--CCHHHHHHHHHcCCC
Confidence            9999844  458899999998775

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.81  E-value=4.9e-20  Score=128.28  Aligned_cols=37  Identities=27%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccC
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG   46 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~   46 (152)
                      +|.+|+||||+|+..|+.+++++|+++|++++.++..
T Consensus        70 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~  106 (277)
T d2fo1e1          70 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS  106 (277)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             cCCCCCeeecccccccccccccccccccccccccccc
Confidence            3788999999999888999999999888888876654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5.2e-20  Score=127.04  Aligned_cols=94  Identities=26%  Similarity=0.217  Sum_probs=82.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCC---ccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGAD---IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~---~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +++|.||||+|++.|+.+++++|++.|++   ++.++..  |+||||+|+..|+.+++++|++.|+++  +.+|..|.||
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~--g~TpL~~A~~~g~~~iv~~Ll~~ga~i--~~~d~~g~tp   81 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL--GQTALHLAAILGEASTVEKLYAAGAGV--LVAERGGHTA   81 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCTTSCCH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCC--CCCccchHHhhcccccccccccccccc--cccccccchh
Confidence            78899999999999999999999999987   5566666  999999999999999999999999988  8899999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhc
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      ||+|+..+.  .++++++.+...
T Consensus        82 L~~A~~~~~--~~~~~~Ll~~~~  102 (255)
T d1oy3d_          82 LHLACRVRA--HTCACVLLQPRP  102 (255)
T ss_dssp             HHHHTTTTC--HHHHHHHSSSCC
T ss_pred             hhhhhccCc--hHHHHHHHhhcc
Confidence            999985443  677877765543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=2.3e-19  Score=120.30  Aligned_cols=90  Identities=31%  Similarity=0.348  Sum_probs=83.4

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      ++..|.|||++++..+..++++.+++.+.+++..+..  |.||||+|+..|+.+++++|+++|+++  +.+|..|.||||
T Consensus       119 ~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~--g~TpL~~A~~~g~~~~v~~Ll~~gad~--n~~d~~g~Tpl~  194 (209)
T d1ot8a_         119 ADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDK--DETPLFLAAREGSYEASKALLDNFANR--EITDHMDRLPRD  194 (209)
T ss_dssp             BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHH
T ss_pred             cCCCCCCcchhhcccCcceeeeeeccccccccccccc--cccccchhccccHHHHHHHHHHCCCCC--CCcCCCCCCHHH
Confidence            4888999999999999999999999999999999888  999999999999999999999999988  889999999999


Q ss_pred             ccccchhhHHHHHHHH
Q 031810           90 YCPSLEWAYEEMMRFQ  105 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l  105 (152)
                      +|+  ..++.+++++|
T Consensus       195 ~A~--~~~~~~iv~lL  208 (209)
T d1ot8a_         195 VAS--ERLHHDIVRLL  208 (209)
T ss_dssp             HHH--HTTCHHHHHHH
T ss_pred             HHH--HcCCHHHHhhc
Confidence            999  44557899876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.6e-19  Score=122.54  Aligned_cols=56  Identities=18%  Similarity=0.162  Sum_probs=29.7

Q ss_pred             CchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHh
Q 031810           49 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        49 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~  108 (152)
                      |+||||+|+..|+.+++++|+++|+|+  +.+|.+|.||||+|+.  .++.+++++|.+.
T Consensus       145 G~T~L~~A~~~g~~~~v~~Ll~~gad~--~~~~~~G~tpl~~A~~--~~~~~~~~~l~~~  200 (221)
T d1iknd_         145 GRTALHLAVDLQNPDLVSLLLKCGADV--NRVTYQGYSPYQLTWG--RPSTRIQQQLGQL  200 (221)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCS--CCCCTTCCCGGGGCTT--SSCHHHHHHHHTT
T ss_pred             CCCccccccccccHHHHHHHHhcCCcc--cccCCCCCCHHHHHHH--CCCHHHHHHHHHc
Confidence            455555555555555555555555554  5555555555555552  2234555555444

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.7e-19  Score=121.10  Aligned_cols=99  Identities=28%  Similarity=0.299  Sum_probs=88.1

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +.+|.+|.||||+|+..|+.+++++|+++|++++..+..  |.||||+|+..++.+++++|+..+.++  +.+|..|.||
T Consensus        97 ~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~--~~t~L~~a~~~~~~~~~~~L~~~~~~i--~~~d~~g~Tp  172 (223)
T d1uoha_          97 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY--EATAMHRAAAKGNLKMIHILLYYKAST--NIQDTEGNTP  172 (223)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTCCCH
T ss_pred             EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCC--CCccchhhhhcCCcchhhhhcccccee--eeccCCCCce
Confidence            345899999999999999999999999999999998887  999999999999999999999999987  8899999999


Q ss_pred             ccccccchhhHHHHHHHHHHhhcCC
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      ||+|+..  ++.+++++|++.+.+.
T Consensus       173 L~~Aa~~--g~~~~v~~LL~~Gad~  195 (223)
T d1uoha_         173 LHLACDE--ERVEEAKLLVSQGASI  195 (223)
T ss_dssp             HHHHHHT--TCHHHHHHHHHTTCCS
T ss_pred             ecccccc--CcHHHHHHHHHCCCCC
Confidence            9999944  4478999998876543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.4e-19  Score=128.90  Aligned_cols=91  Identities=31%  Similarity=0.465  Sum_probs=82.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccc
Q 031810           15 VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSL   94 (152)
Q Consensus        15 ~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~   94 (152)
                      .||||+|+..|+.++|+.|++.|+++|..+..  |+||||+|+..|+.+++++|+++|+++  +..+.+|.||||+|+  
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~--g~TpL~~A~~~g~~~iv~~Ll~~gadi--~~~~~~g~t~L~~A~--   74 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVK--VETPLHMAARAGHTEVAKYLLQNKAKV--NAKAKDDQTPLHCAA--   74 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSC--CCCHHHHHHHHTCHHHHHHHHHHTCCS--SCCCTTSCCHHHHHH--
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCcCCC--CCCCCCCCCHHHHHH--
Confidence            49999999999999999999999999999887  999999999999999999999999988  889999999999998  


Q ss_pred             hhhHHHHHHHHHHhhcC
Q 031810           95 EWAYEEMMRFQRESFSA  111 (152)
Q Consensus        95 ~~~~~~~~~~l~~~~~~  111 (152)
                      ..+..+++++|......
T Consensus        75 ~~g~~~~~~~Ll~~~~~   91 (408)
T d1n11a_          75 RIGHTNMVKLLLENNAN   91 (408)
T ss_dssp             HHTCHHHHHHHHHHTCC
T ss_pred             HcCCHHHHHHHHHhhhc
Confidence            44457888888776654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.2e-19  Score=119.63  Aligned_cols=77  Identities=36%  Similarity=0.578  Sum_probs=38.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 031810           12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC   91 (152)
Q Consensus        12 ~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a   91 (152)
                      ..+.++++.++..++.+++++|++.|++++..+..  |.||||+|+..++.+++++|+++|+++  +.++..|.||||+|
T Consensus        68 ~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~--g~tpL~~A~~~~~~e~~~~Ll~~g~d~--~~~~~~~~t~L~~a  143 (223)
T d1uoha_          68 DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN--GCTPLHYAASKNRHEIAVMLLEGGANP--DAKDHYEATAMHRA  143 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHH
T ss_pred             ccccccccccccccccchhHHHhccCceeEeeCCC--CCchhhHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCccchhh
Confidence            33444555555555555555555555555444444  455555555555555555555555444  44444455555554


Q ss_pred             c
Q 031810           92 P   92 (152)
Q Consensus        92 ~   92 (152)
                      +
T Consensus       144 ~  144 (223)
T d1uoha_         144 A  144 (223)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.78  E-value=4.1e-19  Score=124.61  Aligned_cols=90  Identities=30%  Similarity=0.458  Sum_probs=80.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      .+..|.||||+|+..|+.++++.|++.|++++..+..  |+||||+|+..|+.+++++|+++|+++  +.+|..|.||||
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~--g~TpL~~A~~~g~~~iv~lLl~~Gadv--~~~d~~G~TaL~  270 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD--GWTPLHAAAHWGKEEACRILVENLCDM--EAVNKVGQTAFD  270 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCTTT
T ss_pred             ccCCCCChhhHHHHcCChhhhcccccceecccccccC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHH
Confidence            5788999999999999999999999999999998888  999999999999999999999999988  889999999999


Q ss_pred             ccccchhhHHHHHHHHHHhh
Q 031810           90 YCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~  109 (152)
                      +|+.      +++.+|.+..
T Consensus       271 ~A~e------~~~~~L~~~~  284 (291)
T d1s70b_         271 VADE------DILGYLEELQ  284 (291)
T ss_dssp             SCCS------GGGHHHHHHH
T ss_pred             HHHH------HHHHHHHHHh
Confidence            9972      3555555443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.6e-19  Score=113.65  Aligned_cols=96  Identities=22%  Similarity=0.307  Sum_probs=79.5

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP   87 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tp   87 (152)
                      +.+|..|+||||+|+. ++.++++.|++.+.+++..+..  |.+|++.++..++.++++++++.|+++  +.++..|.||
T Consensus        30 n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~l~~~~~~--n~~~~~~~t~  104 (156)
T d1bd8a_          30 DALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS--GTSPVHDAARTGFLDTLKVLVEHGADV--NVPDGTGALP  104 (156)
T ss_dssp             TCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTSCCH
T ss_pred             CccCCCCCcccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccccccc--ccccCCCCee
Confidence            3458889999998864 7889999999999999887776  889999999999999999999999877  7788899999


Q ss_pred             ccccccchhhHHHHHHHHHHhhc
Q 031810           88 LHYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      ||+|+.  .++.+++++|..+..
T Consensus       105 L~~A~~--~~~~~i~~~L~~~~~  125 (156)
T d1bd8a_         105 IHLAVQ--EGHTAVVSFLAAESD  125 (156)
T ss_dssp             HHHHHH--HTCHHHHHHHHTTSC
T ss_pred             eccccc--ccccccccccccccc
Confidence            999984  444678888876543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.6e-19  Score=127.57  Aligned_cols=97  Identities=30%  Similarity=0.474  Sum_probs=73.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      .+..+.||||.++..++..+++.+++.|++++.++.+  |.||||+|+..|+.+++++|+++|+++  +.+|.+|.||||
T Consensus       293 ~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~--G~T~Lh~A~~~g~~~iv~~Ll~~GAd~--n~~d~~G~t~L~  368 (408)
T d1n11a_         293 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL--GYSPLHQAAQQGHTDIVTLLLKNGASP--NEVSSDGTTPLA  368 (408)
T ss_dssp             CCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCS--CCCCSSSCCHHH
T ss_pred             ccccccccchhhcccCcceeeeeeccccccccccCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHH
Confidence            3566777777777777777777777778888877776  888888888888888888888888877  778888888888


Q ss_pred             ccccchhhHHHHHHHHHHhhcCC
Q 031810           90 YCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                      +|+  ..++.+++++|.......
T Consensus       369 ~A~--~~~~~~iv~~L~~~~~~~  389 (408)
T d1n11a_         369 IAK--RLGYISVTDVLKVVTDET  389 (408)
T ss_dssp             HHH--HTTCHHHHHHHHHHCCCC
T ss_pred             HHH--HcCCHHHHHHHHHHHhcc
Confidence            887  334467777775554443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.9e-19  Score=109.88  Aligned_cols=93  Identities=27%  Similarity=0.410  Sum_probs=82.2

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCc-hHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCC
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW-TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP   86 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~t   86 (152)
                      +.+|..|.||+|.|+ .|+.+++++|++.|++++..+..  +. ||||+|+..|+.+++++|+++|+++  +.+|..|.|
T Consensus        30 n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~--~~~~~L~~A~~~g~~~~v~~Ll~~ga~~--~~~d~~G~T  104 (125)
T d1bi7b_          30 NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA--TLTRPVHDAAREGFLDTLVVLHRAGARL--DVRDAWGRL  104 (125)
T ss_dssp             TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTT--TCCCHHHHHHHHTCHHHHHHHHHHTCCS--SCCCTTCCC
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccc--cccccccccccccccccccccccccccc--ccccCCCCC
Confidence            345899999999775 68999999999999999988876  54 7999999999999999999999988  889999999


Q ss_pred             cccccccchhhHHHHHHHHHH
Q 031810           87 PLHYCPSLEWAYEEMMRFQRE  107 (152)
Q Consensus        87 pl~~a~~~~~~~~~~~~~l~~  107 (152)
                      |||+|+  ..++.+++++|+.
T Consensus       105 ~l~~A~--~~g~~~~v~~Lls  123 (125)
T d1bi7b_         105 PVDLAE--ELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHH--HHTCHHHHHHHSS
T ss_pred             HHHHHH--HcCCHHHHHHHHh
Confidence            999998  4555889998864

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.76  E-value=2.4e-19  Score=124.68  Aligned_cols=90  Identities=27%  Similarity=0.295  Sum_probs=77.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHH--------HhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCC
Q 031810           12 SKGVTPLHLAAQGGHLEVMDVL--------LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSR   83 (152)
Q Consensus        12 ~~g~t~L~~a~~~g~~~~~~~L--------l~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~   83 (152)
                      .+|+||||+|+..|+.++++.|        ++.|+++|.++.+  |+||||+|+..|+.+++++|+++|+++  +.++..
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~--G~TpLh~A~~~g~~~iv~~Ll~~Gad~--n~~~~~  106 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD--ENTPLMLAVLARRRRLVAYLMKAGADP--TIYNKS  106 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCC--CCeeecccccccccccccccccccccc--cccccc
Confidence            5699999999999998877666        5679999999988  999999999999999999999999988  889999


Q ss_pred             CCCcccccccchhhHHHHHHHHHH
Q 031810           84 FNPPLHYCPSLEWAYEEMMRFQRE  107 (152)
Q Consensus        84 g~tpl~~a~~~~~~~~~~~~~l~~  107 (152)
                      |.|||++|...+  ...+..++..
T Consensus       107 g~t~l~~a~~~~--~~~~~~~l~~  128 (277)
T d2fo1e1         107 ERSALHQAAANR--DFGMMVYMLN  128 (277)
T ss_dssp             CCCHHHHHHHTT--CHHHHHHHTT
T ss_pred             ccccccchhhhc--chhhhhhhhh
Confidence            999999998433  3455555544

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=3.6e-18  Score=115.92  Aligned_cols=94  Identities=28%  Similarity=0.393  Sum_probs=79.8

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccccCCCCchHHHHHHhhCcHHHHHHHHH-cCCCCCCCCCCCCCC
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERG-ADIDARTKGACGWTPLHTAAKERKKEAVRFLIE-NGAFLPDDINDSRFN   85 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~ga~~~~~~~~~~g~   85 (152)
                      +.+|..|.||||+|+..|+.++++.|++.+ .+++..+..  |+||||+|+..++.+++++|++ .|+++  +.+|..|+
T Consensus       132 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~--g~TpLh~A~~~~~~~~v~~Ll~~~gad~--~~~d~~g~  207 (229)
T d1ixva_         132 RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ--GWTPLFHALAEGHGDAAVLLVEKYGAEY--DLVDNKGA  207 (229)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTT--SCCHHHHHHHTTCHHHHHHHHHHHCCCS--CCCCTTSC
T ss_pred             cccCCCCCCccchhhhcccccccccccccccccccccccc--cCCchhhhcccccHHHHHHHHHhcCCCC--CCcCCCCC
Confidence            445888999999999999999999999887 577888777  9999999999999999999996 58987  88899999


Q ss_pred             CcccccccchhhHHHHHHHHHHhhc
Q 031810           86 PPLHYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        86 tpl~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      ||||+|+  .   .+++++|.+.+.
T Consensus       208 t~l~~A~--~---~~~~~~Ll~~g~  227 (229)
T d1ixva_         208 KAEDVAL--N---EQVKKFFLNNVV  227 (229)
T ss_dssp             CTGGGCS--C---HHHHHHHHHHCC
T ss_pred             CHHHHHh--h---HHHHHHHHHcCC
Confidence            9999997  2   357788887654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.6e-18  Score=109.19  Aligned_cols=92  Identities=28%  Similarity=0.462  Sum_probs=81.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      ++..|.+|+++++..++.++++.+++.|++++..+..  |+||||+|+..|+.+++++|+ .|+++  +.+|.+|.||||
T Consensus        64 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~--~~t~L~~A~~~~~~~i~~~L~-~~~~~--~~~d~~G~TpL~  138 (156)
T d1bd8a_          64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT--GALPIHLAVQEGHTAVVSFLA-AESDL--HRRDARGLTPLE  138 (156)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHHTCHHHHHHHH-TTSCT--TCCCTTSCCHHH
T ss_pred             cccccccccccccccccccccccccccccccccccCC--CCeeecccccccccccccccc-ccccc--cccCCCCCCHHH
Confidence            4778999999999999999999999999999998887  999999999999999999886 67877  889999999999


Q ss_pred             ccccchhhHHHHHHHHHHh
Q 031810           90 YCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        90 ~a~~~~~~~~~~~~~l~~~  108 (152)
                      +|+  ..+..+++++|+++
T Consensus       139 ~A~--~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         139 LAL--QRGAQDLVDILQGH  155 (156)
T ss_dssp             HHH--HSCCHHHHHHHHTT
T ss_pred             HHH--HcCCHHHHHHHHhh
Confidence            998  44447899998865

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=6.6e-18  Score=119.70  Aligned_cols=49  Identities=27%  Similarity=0.302  Sum_probs=45.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK   61 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~   61 (152)
                      |.+|+||||+|+..|+.++|++|++.|++++.++..  |+||||.||..++
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~--G~TpL~~A~~~~~  152 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM--GESCLVKAVKSVN  152 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT--CCCHHHHHHHSSH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcc--cccHHHHhhhccc
Confidence            889999999999999999999999999999999887  9999999997654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.71  E-value=1.7e-19  Score=130.39  Aligned_cols=94  Identities=14%  Similarity=0.040  Sum_probs=68.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHH---HHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCC--CCCC
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDV---LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND--SRFN   85 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~---Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~--~~g~   85 (152)
                      +..|.||||+|++.|+.+++++   |++.|++++..+..  |+||||+||..|+.++|++|++.|+++  +..+  .+|.
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~--g~taL~~Aa~~G~~~~v~~Ll~~g~~~--~~~~~~~~g~  162 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE--NYQAFRLAAENGHLHVLNRLCELAPTE--IMAMIQAENY  162 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHH--HHHHHHHHHHTTCHHHHHHHHHSCTTT--HHHHHSHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCC--CCCHHHHHHHCCCHHHHHHHHHcCCCc--cccccccCCC
Confidence            5678888888888888766654   67788888888777  888888888888888888888888876  4443  4578


Q ss_pred             CcccccccchhhHHHHHHHHHHhhc
Q 031810           86 PPLHYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        86 tpl~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      ||||+|+  ..++.+++++|.+...
T Consensus       163 t~L~~Aa--~~g~~~iv~~Ll~~~~  185 (346)
T d2ajaa1         163 HAFRLAA--ENGHLHVLNRLCELAP  185 (346)
T ss_dssp             HHHHHHH--HTTCHHHHHHHHHSCG
T ss_pred             ChhHHHH--HHhhHHHHHHHHHcCC
Confidence            8888887  4444788888877543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.8e-17  Score=105.15  Aligned_cols=90  Identities=31%  Similarity=0.440  Sum_probs=65.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHH---------------------------------HhcCCCccccccCCCCchHHHHH
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVL---------------------------------LERGADIDARTKGACGWTPLHTA   56 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~L---------------------------------l~~~~~~~~~~~~~~g~t~l~~a   56 (152)
                      .|..|.||||+|+..++.+++..+                                 +..+++.+..+..  |+||||+|
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--g~T~L~~A  107 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML--KMTALHWA  107 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT--SCCHHHHH
T ss_pred             cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCcccccccc--CchHHHhh
Confidence            367788888888887776655544                                 4445666666665  77888888


Q ss_pred             HhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHH
Q 031810           57 AKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQ  105 (152)
Q Consensus        57 ~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l  105 (152)
                      +..|+.+++++|++.|+++  +..|.+|.||||+|+  ..++.+++++|
T Consensus       108 ~~~g~~~iv~~ll~~gad~--~~~d~~g~Tpl~~A~--~~g~~eiv~lL  152 (153)
T d1awcb_         108 TEHNHQEVVELLIKYGADV--HTQSKFCKTAFDISI--DNGNEDLAEIL  152 (153)
T ss_dssp             HHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHH--HTTCHHHHHHH
T ss_pred             hhcchhheeeeccccccCC--cccCCCCCCHHHHHH--HcCCHHHHHhC
Confidence            8888888888888888766  677788888888887  44446777765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.69  E-value=1.4e-19  Score=130.82  Aligned_cols=100  Identities=16%  Similarity=0.108  Sum_probs=79.4

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCC-CCCCCCCCCC
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLP-DDINDSRFNP   86 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~-~~~~~~~g~t   86 (152)
                      +.+|..|+||||+|++.|+.++|++|++.|++++..+....|+||||+|+..|+.+++++|++.|++.. .+..+.++.|
T Consensus       120 n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t  199 (346)
T d2ajaa1         120 KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA  199 (346)
T ss_dssp             C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcc
Confidence            335888999999999999999999999999999876643338999999999999999999999997541 1233455667


Q ss_pred             cccccccchhhHHHHHHHHHHhh
Q 031810           87 PLHYCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        87 pl~~a~~~~~~~~~~~~~l~~~~  109 (152)
                      |++.|+  ..++.+++++|.+.+
T Consensus       200 ~l~~A~--~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         200 FRWAAV--GRGHHNVINFLLDCP  220 (346)
T ss_dssp             HHHHHS--TTCCHHHHHHHTTSH
T ss_pred             hhhHHh--hcCHHHHHHHHHhCC
Confidence            888887  444578999987654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-16  Score=106.82  Aligned_cols=92  Identities=27%  Similarity=0.306  Sum_probs=78.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHh----cCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 031810           13 KGVTPLHLAAQGGHLEVMDVLLE----RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL   88 (152)
Q Consensus        13 ~g~t~L~~a~~~g~~~~~~~Ll~----~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl   88 (152)
                      +|+||||+|+..|+.++++.|++    .|++++.++..  |+||||+|+..|+.+++++|+++|++.  +.....|.+++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~--g~TpL~~A~~~~~~~iv~~Ll~~ga~~--~~~~~~~~~~~   77 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL--RQTPLHLAVITTLPSVVRLLVTAGASP--MALDRHGQTAA   77 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCC--CCccceehhcccccccccccccccccc--ccccccccccc
Confidence            59999999999999999988874    78999999887  999999999999999999999999987  77888899999


Q ss_pred             cccccchhhHHHHHHHHHHhhc
Q 031810           89 HYCPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        89 ~~a~~~~~~~~~~~~~l~~~~~  110 (152)
                      +.|...  ....+++.......
T Consensus        78 ~~a~~~--~~~~~~~~~~~~~~   97 (228)
T d1k1aa_          78 HLACEH--RSPTCLRALLDSAA   97 (228)
T ss_dssp             HHHHHT--TCHHHHHHHHHHSC
T ss_pred             cccccc--ccccchhhhhhccc
Confidence            999733  33456655555443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2e-16  Score=101.34  Aligned_cols=93  Identities=27%  Similarity=0.358  Sum_probs=56.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY   90 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~   90 (152)
                      |.+|.||||+|+ .|+.+++++|++.|++++..+..  |.++++.++..+..+++..|+..+.++  +..+..|.+|+|+
T Consensus        31 d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~--~~~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~l~~  105 (156)
T d1ihba_          31 NGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRT--GFAVIHDAARAGFLDTLQTLLEFQADV--NIEDNEGNLPLHL  105 (156)
T ss_dssp             CTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHH
T ss_pred             CCcccccccccc-ccccccccccccccccccccccc--Ccccccccccccccccccccccccccc--ccccccccccccc
Confidence            566666666554 45666666666666666665555  666666666666666666666666655  5566666666666


Q ss_pred             cccchhhHHHHHHHHHHhhc
Q 031810           91 CPSLEWAYEEMMRFQRESFS  110 (152)
Q Consensus        91 a~~~~~~~~~~~~~l~~~~~  110 (152)
                      |+..  +..+++++|.+...
T Consensus       106 a~~~--~~~~~~~~Ll~~~~  123 (156)
T d1ihba_         106 AAKE--GHLRVVEFLVKHTA  123 (156)
T ss_dssp             HHHT--TCHHHHHHHHHHSC
T ss_pred             cccc--cccccccccccccc
Confidence            6532  23455555555543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=1.3e-16  Score=106.58  Aligned_cols=97  Identities=30%  Similarity=0.349  Sum_probs=84.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCC------------------------------------------
Q 031810           11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC------------------------------------------   48 (152)
Q Consensus        11 d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~------------------------------------------   48 (152)
                      |.+|.||||+||+.|+.+++++|+..|++++..+....                                          
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR   99 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            67899999999999999999999999887766554422                                          


Q ss_pred             -----------------------CchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHH
Q 031810           49 -----------------------GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQ  105 (152)
Q Consensus        49 -----------------------g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l  105 (152)
                                             |+|||++++..+..++++.+++.+.++  +..|..|.||||+|+  ..++.+++++|
T Consensus       100 ~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~--~~~d~~g~TpL~~A~--~~g~~~~v~~L  175 (209)
T d1ot8a_         100 LAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR--DAQDDKDETPLFLAA--REGSYEASKAL  175 (209)
T ss_dssp             TTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHH--HTTCHHHHHHH
T ss_pred             ccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccc--cccccccccccchhc--cccHHHHHHHH
Confidence                                   789999999999999999999999987  888999999999998  44558899999


Q ss_pred             HHhhcC
Q 031810          106 RESFSA  111 (152)
Q Consensus       106 ~~~~~~  111 (152)
                      ++.+.+
T Consensus       176 l~~gad  181 (209)
T d1ot8a_         176 LDNFAN  181 (209)
T ss_dssp             HHTTCC
T ss_pred             HHCCCC
Confidence            987755

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.9e-16  Score=105.66  Aligned_cols=87  Identities=24%  Similarity=0.387  Sum_probs=78.7

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH   89 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~   89 (152)
                      .+..|.++|+.|+..+...+++.+++.|..++.++..  |.||||+|+..|+.+++++|+++|+++  +.+|.+|.||||
T Consensus       140 ~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~--g~t~L~~A~~~g~~~~v~~Ll~~Gad~--n~~d~~G~TpL~  215 (228)
T d1k1aa_         140 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS--GSSALHSASGRGLLPLVRTLVRSGADS--SLKNCHNDTPLM  215 (228)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTT--SCBHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCTTT
T ss_pred             cccchhhHHHHHHHhhhhhhhhhhhhhcccccccccc--CcchHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHH
Confidence            3677899999999999999999999999999998887  999999999999999999999999988  889999999999


Q ss_pred             ccccchhhHHHHH
Q 031810           90 YCPSLEWAYEEMM  102 (152)
Q Consensus        90 ~a~~~~~~~~~~~  102 (152)
                      +|+  ..++.+++
T Consensus       216 ~A~--~~~~~div  226 (228)
T d1k1aa_         216 VAR--SRRVIDIL  226 (228)
T ss_dssp             TCS--SHHHHHHH
T ss_pred             HHH--hCCCcccc
Confidence            998  44445554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.1e-17  Score=111.93  Aligned_cols=134  Identities=21%  Similarity=0.141  Sum_probs=91.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCC----CCCCCCCCC
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLP----DDINDSRFN   85 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~----~~~~~~~g~   85 (152)
                      +|.+|+||||+|+..|+.+++++|++.|++++..+..  |.||||+++..+..++++.|+..+....    .......|.
T Consensus        35 ~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~--g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  112 (221)
T d1iknd_          35 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR--GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH  112 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTT--CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC
T ss_pred             CCCCCCccccccccccccccccccccccccccccccc--cccccccccccccccccchhhhhcccccccccccccccccc
Confidence            4888999999999999999999999999999888877  8899999999999999998888776532    133344678


Q ss_pred             CcccccccchhhHHHHHHHHHHhhcCCCccCCchh--hhHHHHHHhhhhhHHHhhhcCCccccc
Q 031810           86 PPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEK--LNALSRLLVHMMPLLWLDLASDAVLSV  147 (152)
Q Consensus        86 tpl~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (152)
                      ||||+|+..  +..+++.++...............  ....+....+...+.++...+..+-.+
T Consensus       113 t~l~~a~~~--~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~  174 (221)
T d1iknd_         113 TCLHLASIH--GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV  174 (221)
T ss_dssp             CHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCC
T ss_pred             hhhhHHhhc--CChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccccc
Confidence            999998743  346677777766554332222222  233333345555555555555444433

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.2e-16  Score=99.83  Aligned_cols=95  Identities=25%  Similarity=0.359  Sum_probs=84.9

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCC-CCCCCCCCCCCCCc
Q 031810            9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA-FLPDDINDSRFNPP   87 (152)
Q Consensus         9 ~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga-~~~~~~~~~~g~tp   87 (152)
                      .++..|.++++.++..+....++.|+..+.+++..+..  |.+|+|+|+..++.+++++|+++++ +.  +.++.+|.||
T Consensus        61 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~~~~~~--~~~d~~g~Tp  136 (156)
T d1ihba_          61 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE--GNLPLHLAAKEGHLRVVEFLVKHTASNV--GHRNHKGDTA  136 (156)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHSCCCT--TCCCTTSCCH
T ss_pred             cccccCcccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccc--cccCCCCCCH
Confidence            35888999999999999999999999999999988877  9999999999999999999999987 44  8899999999


Q ss_pred             ccccccchhhHHHHHHHHHHhh
Q 031810           88 LHYCPSLEWAYEEMMRFQRESF  109 (152)
Q Consensus        88 l~~a~~~~~~~~~~~~~l~~~~  109 (152)
                      ||+|+.  .++.+++++|.+.+
T Consensus       137 L~~A~~--~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         137 CDLARL--YGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHH--TTCHHHHHHHHHTC
T ss_pred             HHHHHH--cCCHHHHHHHHhcC
Confidence            999994  44578999998753

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.5e-16  Score=101.46  Aligned_cols=63  Identities=25%  Similarity=0.350  Sum_probs=59.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCC
Q 031810           10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF   74 (152)
Q Consensus        10 ~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~   74 (152)
                      +|..|+||||+|++.|+.+++++|+++|++++.++..  |+||||+|+..|+.+++++|++.++.
T Consensus        77 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~--g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          77 QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES--GETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             hhhhhccccccccccccccccccccccCccccccCCC--CCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            4899999999999999999999999999999999888  99999999999999999999998764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=2.3e-16  Score=110.34  Aligned_cols=92  Identities=30%  Similarity=0.396  Sum_probs=81.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCccccccc
Q 031810           14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS   93 (152)
Q Consensus        14 g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~   93 (152)
                      +.|+|+.||..|+.++|+.|++.|+++|..+.+  |+||||+|+..|+.+++++|+++|++.  ...+..+.+||++++ 
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~--G~T~L~~A~~~g~~eiv~~Ll~~~~~~--~~~~~~~~~~L~~a~-  114 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADINYANVD--GLTALHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPLHAAA-  114 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTT--CCBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHH-
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCccCCC--CCcHHHHHHhcCCceeeeeeccccccc--ccccccccccccccc-
Confidence            568999999999999999999999999999888  999999999999999999999999977  778888999999998 


Q ss_pred             chhhHHHHHHHHHHhhcC
Q 031810           94 LEWAYEEMMRFQRESFSA  111 (152)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~  111 (152)
                       ..+..++++.+.+.+..
T Consensus       115 -~~~~~~~~~~l~~~~~~  131 (291)
T d1s70b_         115 -SCGYLDIAEYLISQGAH  131 (291)
T ss_dssp             -HHTCHHHHHHHHHTTCC
T ss_pred             -cccccchhhcccccCcc
Confidence             44446788777776543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.1e-16  Score=106.96  Aligned_cols=77  Identities=22%  Similarity=0.298  Sum_probs=48.4

Q ss_pred             HHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHc-CCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHH
Q 031810           29 VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN-GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  107 (152)
Q Consensus        29 ~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~  107 (152)
                      ++++|++.|++++.++..  |.||||+|+..++.+++++|++. |+++  +.+|.+|.||||+|+.  .++.+++++|++
T Consensus       201 i~~~Li~~ga~~n~~~~~--g~t~L~~a~~~~~~~~v~~lL~~~g~di--n~~d~~G~TpL~~A~~--~~~~eiv~~Ll~  274 (285)
T d1wdya_         201 ITHLLLDHGADVNVRGER--GKTPLILAVEKKHLGLVQRLLEQEHIEI--NDTDSDGKTALLLAVE--LKLKKIAELLCK  274 (285)
T ss_dssp             HHHHHHHTTCCSSCCCTT--SCCHHHHHHHTTCHHHHHHHHHSSSCCT--TCCCTTSCCHHHHHHH--TTCHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCccCCC--CCCccchhhhcCcHHHHHHHHHcCCCCC--cCCCCCCCCHHHHHHH--cCCHHHHHHHHH
Confidence            334444445555555544  67777777777777777777763 6665  6667777777777763  334667777776


Q ss_pred             hhcC
Q 031810          108 SFSA  111 (152)
Q Consensus       108 ~~~~  111 (152)
                      .+.+
T Consensus       275 ~GAd  278 (285)
T d1wdya_         275 RGAS  278 (285)
T ss_dssp             HSSC
T ss_pred             CCCC
Confidence            6655

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.9e-15  Score=105.02  Aligned_cols=70  Identities=31%  Similarity=0.378  Sum_probs=64.1

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCC
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLE-RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND   81 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~-~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~   81 (152)
                      +.+|..|.||||.|+..|+.+++++|++ .|++++..+.+  |.||||+|+..++.+++++|+++||++  +..|
T Consensus       213 n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~--G~TpL~~A~~~~~~eiv~~Ll~~GAd~--n~~d  283 (285)
T d1wdya_         213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD--GKTALLLAVELKLKKIAELLCKRGAST--DCGD  283 (285)
T ss_dssp             SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHSSCS--CCSS
T ss_pred             CccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--Cccc
Confidence            3458899999999999999999999997 58999999888  999999999999999999999999988  6665

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=2.3e-15  Score=106.41  Aligned_cols=49  Identities=24%  Similarity=0.227  Sum_probs=39.9

Q ss_pred             ccccccCCCCchHHHHHHhhCcHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 031810           40 IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP   92 (152)
Q Consensus        40 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~   92 (152)
                      +|.+|..  |+||||+|++.|+.+++++|+++|+++  +..|..|.|||++|+
T Consensus       252 in~~D~~--G~TpLh~A~~~g~~~iv~~Ll~~GAd~--~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSN--GDTCLNIAARLGNISIVDALLDYGADP--FIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTT--SCCHHHHHHHHCCHHHHHHHHHTTCCT--TCCCTTSCCGGGGTC
T ss_pred             ccCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHcC
Confidence            4556666  888888888888888888888888877  788888888888886

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=7.1e-15  Score=99.33  Aligned_cols=95  Identities=26%  Similarity=0.262  Sum_probs=83.2

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHHHHHHHHHcCC-CCCCCCCCCCCCC
Q 031810            8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA-FLPDDINDSRFNP   86 (152)
Q Consensus         8 ~~~d~~g~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga-~~~~~~~~~~g~t   86 (152)
                      ...+..+.|+++.++..++.++++.|+..|.+.+..+..  |+||||+|+..++.+++++|++.+. ++  +.+|..|.|
T Consensus        99 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~--g~t~l~~a~~~~~~~~~~~Ll~~~~~~i--n~~d~~g~T  174 (229)
T d1ixva_          99 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF--NQIPLHRAASVGSLKLIELLCGLGKSAV--NWQDKQGWT  174 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHHTCHHHHHHHHTTTCCCS--CCCCTTSCC
T ss_pred             cccccccccccccccccchhhhhhhhhhhcccccccCCC--CCCccchhhhcccccccccccccccccc--cccccccCC
Confidence            345778899999999999999999999999999888877  9999999999999999999999874 44  788999999


Q ss_pred             cccccccchhhHHHHHHHHHHh
Q 031810           87 PLHYCPSLEWAYEEMMRFQRES  108 (152)
Q Consensus        87 pl~~a~~~~~~~~~~~~~l~~~  108 (152)
                      |||+|+  ..++.+++++|.+.
T Consensus       175 pLh~A~--~~~~~~~v~~Ll~~  194 (229)
T d1ixva_         175 PLFHAL--AEGHGDAAVLLVEK  194 (229)
T ss_dssp             HHHHHH--HTTCHHHHHHHHHH
T ss_pred             chhhhc--ccccHHHHHHHHHh
Confidence            999999  44557899988864

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3.7e-14  Score=90.26  Aligned_cols=91  Identities=23%  Similarity=0.249  Sum_probs=74.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccccCCCCchHHHHHHhhCcHH-------------------------------
Q 031810           15 VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKE-------------------------------   63 (152)
Q Consensus        15 ~t~L~~a~~~g~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~-------------------------------   63 (152)
                      .|||+.|++.|+.+++++|++.|++++ .+..  |+||||+|+..++.+                               
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~--g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWL--GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTT--CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccC--CCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            499999999999999999999999887 4666  999999999777666                               


Q ss_pred             --HHHHHHHcCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHhhcCC
Q 031810           64 --AVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG  112 (152)
Q Consensus        64 --~~~~Ll~~ga~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~l~~~~~~~  112 (152)
                        ++++++..+++.  ..++..|.||||+|+.  .++.+++++|.+.+.+.
T Consensus        80 ~~~~~~l~~~~~~~--~~~~~~g~T~L~~A~~--~g~~~iv~~ll~~gad~  126 (153)
T d1awcb_          80 ANIVEVLLKHGADV--NAKDMLKMTALHWATE--HNHQEVVELLIKYGADV  126 (153)
T ss_dssp             HHHHHHHHTTTCCT--TCCCTTSCCHHHHHHH--TTCHHHHHHHHHTTCCT
T ss_pred             ceeeecccccCCcc--ccccccCchHHHhhhh--cchhheeeeccccccCC
Confidence              445566666655  7788999999999984  44578999998887543