Citrus Sinensis ID: 031815

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
MAPPKGETKKADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII
cccccccccccccHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHHccccEEEEEccccccEEEEEEEccccccHHHHHHHcccc
ccccccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHcEEEEEEcccccHHHHHHHHHHHHcccEEEEEEEEcccccEEEEEEEcccccHHHHHHccccc
mappkgetkkadpkVQALKTAKAVKSGRTFKKAKKIRtsvtfhrpktlkkdrnpkyprisapprnkldhyqilkyplttESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNtlirpdgtkkayvrltpdsdaldvankigii
mappkgetkkadpkvqalktakavksgrtfkkakkirtsvtfhrpktlkkdrnpkyprisapprnkldhyQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDiqakkvntlirpdgtkkayvrltpdsdaldvankigii
MAPPKGETKKADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFivdiradkkkikdavkkMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII
******************************************************************LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLT***************
**********************AVKSGRTFKKAKKIRTSVTFHRPKTLK************PPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII
****************ALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII
**********************AV**GRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII
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MAPPKGETKKADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query152 2.2.26 [Sep-21-2011]
Q9AT35154 60S ribosomal protein L23 N/A no 1.0 0.987 0.883 9e-63
O22644154 60S ribosomal protein L23 N/A no 1.0 0.987 0.889 1e-62
Q07761154 60S ribosomal protein L23 N/A no 1.0 0.987 0.863 4e-52
Q9M3C3154 60S ribosomal protein L23 yes no 0.835 0.824 0.898 2e-51
Q8LD46154 60S ribosomal protein L23 no no 0.835 0.824 0.890 7e-50
P62752156 60S ribosomal protein L23 yes no 0.828 0.807 0.769 1e-47
P62751156 60S ribosomal protein L23 yes no 0.828 0.807 0.769 1e-47
P62750156 60S ribosomal protein L23 yes no 0.828 0.807 0.769 1e-47
Q24JY1156 60S ribosomal protein L23 yes no 0.828 0.807 0.769 1e-47
P51997158 60S ribosomal protein L25 N/A no 0.980 0.943 0.601 2e-43
>sp|Q9AT35|RL23A_DAUCA 60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1 Back     alignment and function desciption
 Score =  238 bits (608), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 136/154 (88%), Positives = 141/154 (91%), Gaps = 2/154 (1%)

Query: 1   MAPPKGE-TKKADPKVQALKTAKAVKSGRT-FKKAKKIRTSVTFHRPKTLKKDRNPKYPR 58
           M+P K + TKK+D K QALKTAKAVKSG T FKK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 59  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAK 118
           ISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQ K
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 119 KVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 152
           KVNTLIRPDGTKKAYVRLTPD DALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
This protein binds to a specific region on the 26S rRNA.
Daucus carota (taxid: 4039)
>sp|O22644|RL23A_FRIAG 60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1 Back     alignment and function description
>sp|Q07761|RL23A_TOBAC 60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1 Back     alignment and function description
>sp|Q9M3C3|R23A2_ARATH 60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1 Back     alignment and function description
>sp|Q8LD46|R23A1_ARATH 60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2 Back     alignment and function description
>sp|P62752|RL23A_RAT 60S ribosomal protein L23a OS=Rattus norvegicus GN=Rpl23a PE=2 SV=1 Back     alignment and function description
>sp|P62751|RL23A_MOUSE 60S ribosomal protein L23a OS=Mus musculus GN=Rpl23a PE=1 SV=1 Back     alignment and function description
>sp|P62750|RL23A_HUMAN 60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1 Back     alignment and function description
>sp|Q24JY1|RL23A_BOVIN 60S ribosomal protein L23a OS=Bos taurus GN=RPL23A PE=2 SV=1 Back     alignment and function description
>sp|P51997|RL25_PUCGR 60S ribosomal protein L25 OS=Puccinia graminis PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query152
449459936153 PREDICTED: 60S ribosomal protein L23a-li 1.0 0.993 0.901 3e-68
449445294152 PREDICTED: 60S ribosomal protein L23a-li 1.0 1.0 0.927 5e-65
449445292153 PREDICTED: 60S ribosomal protein L23a-li 1.0 0.993 0.921 3e-64
356558314153 PREDICTED: 60S ribosomal protein L23A-li 1.0 0.993 0.915 4e-64
449445296146 PREDICTED: 60S ribosomal protein L23a-li 0.953 0.993 0.951 9e-64
363807122153 uncharacterized protein LOC100778548 [Gl 1.0 0.993 0.901 1e-63
356539066151 PREDICTED: 60S ribosomal protein L23A-li 0.947 0.953 0.951 2e-63
449464192153 PREDICTED: 60S ribosomal protein L23a-li 1.0 0.993 0.915 2e-63
351724617151 uncharacterized protein LOC100500043 [Gl 0.947 0.953 0.951 3e-63
224091993155 predicted protein [Populus trichocarpa] 0.940 0.922 0.881 4e-63
>gi|449459936|ref|XP_004147702.1| PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus] gi|449514958|ref|XP_004164525.1| PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 138/153 (90%), Positives = 140/153 (91%), Gaps = 1/153 (0%)

Query: 1   MAPPKGETKKADPKVQALKTAKAVKSGRTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 59
           MAP    +KKADPK QALKTAKAVKSG TFKK AKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 60  SAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKK 119
           S  PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQ KK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 120 VNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 152
           VNTLIRPDGTKKAYVRLTPD DALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449445294|ref|XP_004140408.1| PREDICTED: 60S ribosomal protein L23a-like isoform 2 [Cucumis sativus] gi|449498363|ref|XP_004160518.1| PREDICTED: 60S ribosomal protein L23a-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449445292|ref|XP_004140407.1| PREDICTED: 60S ribosomal protein L23a-like isoform 1 [Cucumis sativus] gi|449497783|ref|XP_004160517.1| PREDICTED: 60S ribosomal protein L23a-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356558314|ref|XP_003547452.1| PREDICTED: 60S ribosomal protein L23A-like [Glycine max] Back     alignment and taxonomy information
>gi|449445296|ref|XP_004140409.1| PREDICTED: 60S ribosomal protein L23a-like isoform 3 [Cucumis sativus] gi|449498367|ref|XP_004160519.1| PREDICTED: 60S ribosomal protein L23a-like isoform 3 [Cucumis sativus] Back     alignment and taxonomy information
>gi|363807122|ref|NP_001242083.1| uncharacterized protein LOC100778548 [Glycine max] gi|255629297|gb|ACU14993.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356539066|ref|XP_003538021.1| PREDICTED: 60S ribosomal protein L23A-like [Glycine max] Back     alignment and taxonomy information
>gi|449464192|ref|XP_004149813.1| PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus] gi|449519086|ref|XP_004166566.1| PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|351724617|ref|NP_001236040.1| uncharacterized protein LOC100500043 [Glycine max] gi|255628763|gb|ACU14726.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224091993|ref|XP_002309429.1| predicted protein [Populus trichocarpa] gi|222855405|gb|EEE92952.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query152
TAIR|locus:2039712154 RPL23AA "ribosomal protein L23 1.0 0.987 0.753 7e-54
TAIR|locus:2100611154 RPL23AB "ribosomal protein L23 1.0 0.987 0.753 8.9e-54
UNIPROTKB|J9PAG2156 LOC100687735 "Uncharacterized 0.960 0.935 0.649 3.5e-43
RGD|1587481156 LOC689899 "similar to 60S ribo 0.960 0.935 0.649 4.5e-43
UNIPROTKB|Q24JY1156 RPL23A "60S ribosomal protein 0.960 0.935 0.649 5.7e-43
UNIPROTKB|E2QZG2156 LOC478212 "Uncharacterized pro 0.960 0.935 0.649 5.7e-43
UNIPROTKB|A8MUS3194 RPL23A "Ribosomal protein L23a 0.960 0.752 0.649 5.7e-43
UNIPROTKB|H7BY10158 RPL23A "60S ribosomal protein 0.960 0.924 0.649 5.7e-43
UNIPROTKB|K7ERT8175 RPL23A "60S ribosomal protein 0.960 0.834 0.649 5.7e-43
UNIPROTKB|P62750156 RPL23A "60S ribosomal protein 0.960 0.935 0.649 5.7e-43
TAIR|locus:2039712 RPL23AA "ribosomal protein L23AA" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 116/154 (75%), Positives = 121/154 (78%)

Query:     1 MAPPKGET-KKADPKVQALKTAKAVKSGRTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 58
             M+P K +T KKADPK +ALK AKAVKSG+ FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct:     1 MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query:    59 ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAK 118
             ISA PRNKLDHYQILKYPLTTESAMKKIEDNNTLVF                 MYDIQ K
Sbjct:    61 ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query:   119 KVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 152
             KVNTLIRPDGTKKAYVRLTPD DALDVANKIGII
Sbjct:   121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS;TAS
GO:0015934 "large ribosomal subunit" evidence=TAS
GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS;IDA
GO:0042254 "ribosome biogenesis" evidence=ISS
GO:0005730 "nucleolus" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0009409 "response to cold" evidence=IEP
GO:0009644 "response to high light intensity" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
TAIR|locus:2100611 RPL23AB "ribosomal protein L23AB" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J9PAG2 LOC100687735 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1587481 LOC689899 "similar to 60S ribosomal protein L23a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q24JY1 RPL23A "60S ribosomal protein L23a" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZG2 LOC478212 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A8MUS3 RPL23A "Ribosomal protein L23a, isoform CRA_a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H7BY10 RPL23A "60S ribosomal protein L23a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|K7ERT8 RPL23A "60S ribosomal protein L23a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P62750 RPL23A "60S ribosomal protein L23a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LD46R23A1_ARATHNo assigned EC number0.89060.83550.8246nono
Q9AT35RL23A_DAUCANo assigned EC number0.88311.00.9870N/Ano
P08792RL25_CYBJANo assigned EC number0.57140.92100.9859N/Ano
Q07761RL23A_TOBACNo assigned EC number0.86361.00.9870N/Ano
P62752RL23A_RATNo assigned EC number0.76980.82890.8076yesno
P62750RL23A_HUMANNo assigned EC number0.76980.82890.8076yesno
P62751RL23A_MOUSENo assigned EC number0.76980.82890.8076yesno
Q54BQ3RL23A_DICDINo assigned EC number0.54760.82890.7455yesno
Q24JY1RL23A_BOVINNo assigned EC number0.76980.82890.8076yesno
P04456RL25_YEASTNo assigned EC number0.57930.82890.8873yesno
P51997RL25_PUCGRNo assigned EC number0.60120.98020.9430N/Ano
Q9M3C3R23A2_ARATHNo assigned EC number0.89840.83550.8246yesno
P48045RL25_KLULANo assigned EC number0.550.92100.9859yesno
P48162R23A1_CAEELNo assigned EC number0.59850.90130.9319yesno
O74391RL25B_SCHPONo assigned EC number0.58770.86180.9290yesno
O22644RL23A_FRIAGNo assigned EC number0.88961.00.9870N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00061465
SubName- Full=Putative uncharacterized protein; (156 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.1845.1.1
60S ribosomal protein L4/L1 (RPL4D) (408 aa)
•  ••   0.430
estExt_Genewise1_v1.C_280409
SubName- Full=Putative uncharacterized protein; (408 aa)
•  ••   0.430
estExt_Genewise1_v1.C_LG_XVI2622
60S ribosomal protein L4/L1 (RPL4D) (407 aa)
•  ••   0.404
grail3.0034007902
SubName- Full=Putative uncharacterized protein;; Seems to be required for maximal rate of prote [...] (145 aa)
  ••    0.401
grail3.0033024301
SubName- Full=Putative uncharacterized protein; (92 aa)
  ••    0.400

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query152
PTZ00191145 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Pr 9e-52
PRK1454884 PRK14548, PRK14548, 50S ribosomal protein L23P; Pr 2e-29
TIGR0363677 TIGR03636, L23_arch, archaeal ribosomal protein L2 2e-26
COG008994 COG0089, RplW, Ribosomal protein L23 [Translation, 2e-20
PRK0573892 PRK05738, rplW, 50S ribosomal protein L23; Reviewe 8e-15
pfam0027690 pfam00276, Ribosomal_L23, Ribosomal protein L23 2e-13
pfam0393952 pfam03939, Ribosomal_L23eN, Ribosomal protein L23, 9e-13
CHL0003093 CHL00030, rpl23, ribosomal protein L23 6e-06
PRK12280158 PRK12280, rplW, 50S ribosomal protein L23; Reviewe 0.002
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional Back     alignment and domain information 
 Score =  161 bits (408), Expect = 9e-52
 Identities = 93/143 (65%), Positives = 107/143 (74%), Gaps = 1/143 (0%)

Query: 10  KADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDH 69
               K +A K AKA K G    K +K+RTSV F RPKTL+  + PKYPR   P   KLD 
Sbjct: 4   AKKAKKKAKKAAKAAKKG-VKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDK 62

Query: 70  YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 129
           Y I+KYPLTTE AMKKIEDNNTLVFIVD RA+K +IK AV+K+YD++  KVNTLI PDG 
Sbjct: 63  YSIIKYPLTTEKAMKKIEDNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL 122

Query: 130 KKAYVRLTPDSDALDVANKIGII 152
           KKAY+RL+PD DALDVANKIGII
Sbjct: 123 KKAYIRLSPDVDALDVANKIGII 145

Length = 145
>gnl|CDD|237750 PRK14548, PRK14548, 50S ribosomal protein L23P; Provisional Back     alignment and domain information
>gnl|CDD|132675 TIGR03636, L23_arch, archaeal ribosomal protein L23 Back     alignment and domain information
>gnl|CDD|223167 COG0089, RplW, Ribosomal protein L23 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235586 PRK05738, rplW, 50S ribosomal protein L23; Reviewed Back     alignment and domain information
>gnl|CDD|144021 pfam00276, Ribosomal_L23, Ribosomal protein L23 Back     alignment and domain information
>gnl|CDD|202819 pfam03939, Ribosomal_L23eN, Ribosomal protein L23, N-terminal domain Back     alignment and domain information
>gnl|CDD|176971 CHL00030, rpl23, ribosomal protein L23 Back     alignment and domain information
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 152
PTZ00191145 60S ribosomal protein L23a; Provisional 100.0
KOG1751157 consensus 60s ribosomal protein L23 [Translation, 100.0
PRK1454884 50S ribosomal protein L23P; Provisional 100.0
TIGR0363677 L23_arch archaeal ribosomal protein L23. This mode 100.0
PRK0573892 rplW 50S ribosomal protein L23; Reviewed 99.95
CHL0003093 rpl23 ribosomal protein L23 99.94
COG008994 RplW Ribosomal protein L23 [Translation, ribosomal 99.94
PRK12280158 rplW 50S ribosomal protein L23; Reviewed 99.93
PF0027691 Ribosomal_L23: Ribosomal protein L23; InterPro: IP 99.93
PF0393954 Ribosomal_L23eN: Ribosomal protein L23, N-terminal 99.8
KOG4089165 consensus Predicted mitochondrial ribosomal protei 97.25
>PTZ00191 60S ribosomal protein L23a; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.4e-62  Score=381.70  Aligned_cols=142  Identities=65%  Similarity=0.965  Sum_probs=137.9

Q ss_pred             CCChhHHHHHHHHhhhcccCcccceeeeccccccCCCccCCCCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhcC
Q 031815           10 KADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDN   89 (152)
Q Consensus        10 ~~~~~aka~kakkavlkg~~~~~~~k~~~s~~f~~pktl~~~r~pky~rk~~p~~~kld~~~IIk~Pl~TEkamk~~E~~   89 (152)
                      ...++++|++|++++++|+|+ +++|+|+|++|+||+||+|+|+|+|||+|.|++++||+|+||++|++||+||+++|++
T Consensus         4 ~~~~~~ka~~a~k~~~~g~~~-~~~k~r~~~~f~rpktl~l~r~pky~r~~~~~~~~md~~~IIk~Pl~TEKa~~~~E~~   82 (145)
T PTZ00191          4 AKKAKKKAKKAAKAAKKGVKV-KKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSIIKYPLTTEKAMKKIEDN   82 (145)
T ss_pred             cchHHHHHHHHHHHHhccccc-ceeEeeecceecCCccccCCCCCCCcccccCCCCCCchhhhhhcccccHHHHHHHhhC
Confidence            345688999999999999998 6799999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHhhcCC
Q 031815           90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII  152 (152)
Q Consensus        90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvankigii  152 (152)
                      |+|+|+||++|||+|||+|||+||||+|.+|||+|+|+|||||||+|++|||||||||+||||
T Consensus        83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~kiGi~  145 (145)
T PTZ00191         83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANKIGII  145 (145)
T ss_pred             CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999997

>KOG1751 consensus 60s ribosomal protein L23 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14548 50S ribosomal protein L23P; Provisional Back     alignment and domain information
>TIGR03636 L23_arch archaeal ribosomal protein L23 Back     alignment and domain information
>PRK05738 rplW 50S ribosomal protein L23; Reviewed Back     alignment and domain information
>CHL00030 rpl23 ribosomal protein L23 Back     alignment and domain information
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12280 rplW 50S ribosomal protein L23; Reviewed Back     alignment and domain information
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF03939 Ribosomal_L23eN: Ribosomal protein L23, N-terminal domain; InterPro: IPR005633 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG4089 consensus Predicted mitochondrial ribosomal protein L23 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query152
3izr_X152 Localization Of The Large Subunit Ribosomal Protein 2e-55
2go5_4152 Structure Of Signal Recognition Particle Receptor ( 2e-49
2zkr_s156 Structure Of A Mammalian Ribosomal 60s Subunit With 6e-41
2ww9_K142 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 2e-31
4a17_R150 T.Thermophila 60s Ribosomal Subunit In Complex With 9e-23
3zf7_X164 High-resolution Cryo-electron Microscopy Structure 1e-22
1s1i_T83 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 1e-19
3jyw_T80 Structure Of The 60s Proteins For Eukaryotic Riboso 1e-18
3bbo_V198 Homology Model For The Spinach Chloroplast 50s Subu 1e-16
3j21_T86 Promiscuous Behavior Of Proteins In Archaeal Riboso 3e-10
1ffk_P84 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-09
1s72_S85 Refined Crystal Structure Of The Haloarcula Marismo 2e-09
3g4s_S81 Co-Crystal Structure Of Tiamulin Bound To The Large 4e-08
>pdb|3IZR|X Chain X, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 152 Back     alignment and structure 
Iteration: 1

 Score =  211 bits (536), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 113/150 (75%), Positives = 118/150 (78%), Gaps = 1/150 (0%)
Query: 4   PKGETKKADPKVQ-ALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAP 62
           PK   KKAD K Q ALK AKAVKSG   +K+KKIRTSVTFHRPKTLKK R+PKYPR+SAP
Sbjct: 3   PKAAVKKADGKTQQALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAP 62
Query: 63  PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNT 122
            RNKLD YQILKYPLTTESAMKKIEDNNTLVF                 MYDIQAKKVNT
Sbjct: 63  GRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNT 122
Query: 123 LIRPDGTKKAYVRLTPDSDALDVANKIGII 152
           LIRPDG KKAYV+LTPD DALDVANKIGII
Sbjct: 123 LIRPDGKKKAYVKLTPDYDALDVANKIGII 152
>pdb|2GO5|4 Chain 4, Structure Of Signal Recognition Particle Receptor (Sr) In Complex With Signal Recognition Particle (Srp) And Ribosome Nascent Chain Complex Length = 152 Back     alignment and structure
>pdb|2ZKR|SS Chain s, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 156 Back     alignment and structure
>pdb|2WW9|K Chain K, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 142 Back     alignment and structure
>pdb|4A17|R Chain R, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 150 Back     alignment and structure
>pdb|3ZF7|X Chain X, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 164 Back     alignment and structure
>pdb|1S1I|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 83 Back     alignment and structure
>pdb|3JYW|T Chain T, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 80 Back     alignment and structure
>pdb|3BBO|V Chain V, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 198 Back     alignment and structure
>pdb|3J21|T Chain T, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 86 Back     alignment and structure
>pdb|1FFK|P Chain P, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 84 Back     alignment and structure
>pdb|1S72|S Chain S, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 85 Back     alignment and structure
>pdb|3G4S|S Chain S, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 81 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query152
3u5e_X142 60S ribosomal protein L25; translation, ribosome, 7e-57
3iz5_X152 60S ribosomal protein L23A (L23P); eukaryotic ribo 6e-56
3bbo_V198 Ribosomal protein L23; large ribosomal subunit, sp 5e-53
4a17_R150 RPL23A, 60S ribosomal protein L21; eukaryotic ribo 3e-52
2zkr_s156 60S ribosomal protein L23A; protein-RNA complex, 6 8e-52
1vq8_S85 50S ribosomal protein L23P; ribosome 50S, protein- 2e-39
3r8s_T93 50S ribosomal protein L23; protein biosynthesis, R 2e-14
2zjr_Q95 50S ribosomal protein L23; ribosome, large ribosom 1e-13
3tve_T92 50S ribosomal protein L23; RNA, ribosome, tRNA, tr 3e-13
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 1s1i_T 3jyw_T Length = 142 Back     alignment and structure
 Score =  173 bits (440), Expect = 7e-57
 Identities = 78/140 (55%), Positives = 102/140 (72%)

Query: 13  PKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQI 72
           P  +A    KAV  G   KKA K+RTS TF  PKTLK  R PKY   + P  N+LD Y++
Sbjct: 3   PSAKATAAKKAVVKGTNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKV 62

Query: 73  LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKA 132
           ++ P+T+E+AMKK+ED N LVF V ++A+K +IK AVK++Y++   KVNTL+RP+GTKKA
Sbjct: 63  IEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKA 122

Query: 133 YVRLTPDSDALDVANKIGII 152
           YVRLT D DALD+AN+IG I
Sbjct: 123 YVRLTADYDALDIANRIGYI 142
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 198 Back     alignment and structure
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R Length = 150 Back     alignment and structure
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 156 Back     alignment and structure
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ... Length = 85 Back     alignment and structure
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T 1vs6_T ... Length = 93 Back     alignment and structure
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U Length = 95 Back     alignment and structure
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ... Length = 92 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query152
3iz5_X152 60S ribosomal protein L23A (L23P); eukaryotic ribo 100.0
3u5e_X142 60S ribosomal protein L25; translation, ribosome, 100.0
4a17_R150 RPL23A, 60S ribosomal protein L21; eukaryotic ribo 100.0
2zkr_s156 60S ribosomal protein L23A; protein-RNA complex, 6 100.0
3bbo_V198 Ribosomal protein L23; large ribosomal subunit, sp 100.0
3j21_T86 50S ribosomal protein L23P; archaea, archaeal, KIN 100.0
1vq8_S85 50S ribosomal protein L23P; ribosome 50S, protein- 100.0
3tve_T92 50S ribosomal protein L23; RNA, ribosome, tRNA, tr 99.98
2zjr_Q95 50S ribosomal protein L23; ribosome, large ribosom 99.97
3r8s_T93 50S ribosomal protein L23; protein biosynthesis, R 99.97
1owx_A121 Lupus LA protein, SS-B, LA; RRM, transcription; NM 81.48
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T Back     alignment and structure
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R Back     alignment and structure
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ... Back     alignment and structure
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ... Back     alignment and structure
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U Back     alignment and structure
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ... Back     alignment and structure
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 152
d1vqos181 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon 4e-30
d2qamt193 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherich 7e-19
d2j01x193 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus t 2e-15
d2zjrq193 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococc 2e-15
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 81 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  102 bits (256), Expect = 4e-30
 Identities = 36/80 (45%), Positives = 53/80 (66%)

Query: 70  YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 129
           + ++K+P  TE AM  ++  N L F VD RA K ++ DAV++ YD+  ++VNT    DG 
Sbjct: 2   WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE 61

Query: 130 KKAYVRLTPDSDALDVANKI 149
           KKA VRL+ D DA +VA++I
Sbjct: 62  KKAVVRLSEDDDAQEVASRI 81
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]} Length = 93 Back     information, alignment and structure
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]} Length = 93 Back     information, alignment and structure
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]} Length = 93 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query152
d1vqos181 Ribosomal protein L23 {Archaeon Haloarcula marismo 100.0
d2zjrq193 Ribosomal protein L23 {Deinococcus radiodurans [Ta 99.95
d2qamt193 Ribosomal protein L23 {Escherichia coli [TaxId: 56 99.93
d2j01x193 Ribosomal protein L23 {Thermus thermophilus [TaxId 99.92
d1fxla285 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 80.94
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=5e-34  Score=201.10  Aligned_cols=81  Identities=44%  Similarity=0.639  Sum_probs=79.3

Q ss_pred             ccccccccccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHh
Q 031815           69 HYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANK  148 (152)
Q Consensus        69 ~~~IIk~Pl~TEkamk~~E~~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvank  148 (152)
                      .|+||++|++||+++.++|++|+|+|.||++|||.|||+|||++|||+|.+|||+++++|+|||||+|++|++|+|+|++
T Consensus         1 ~y~iI~~P~iTEKs~~~~e~~n~y~F~V~~~A~K~~IK~AVe~lf~VkV~~Vnt~~~~~~~KkA~V~L~~~~~a~dia~k   80 (81)
T d1vqos1           1 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASR   80 (81)
T ss_dssp             CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHTT
T ss_pred             CcceeeccccCHHHHHHHHhCCEEEEEEcCcCCHHHHHHHHHHHcCCceeEEEEeEcCCCcEEEEEEeCCCCcHHHHHhc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             h
Q 031815          149 I  149 (152)
Q Consensus       149 i  149 (152)
                      |
T Consensus        81 i   81 (81)
T d1vqos1          81 I   81 (81)
T ss_dssp             C
T ss_pred             C
Confidence            6
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure