Citrus Sinensis ID: 031868

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MTILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGELNCHA
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHccccEEEEccccEEEEEEEEccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEccccccEEEEEcEEEEcccHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccHHHHcccHHHHHHHHHccEEEEccccEEEEEEEEcccccccHHccccccccccccccccccEEEEEEEcEHEEEEEEEcccccccEEEEEccccHcHHHHHHHHccccccHHHHccccHHHHHHHcccHHHccccccccccEEEcc
Coil and Loop (DISEMBL)
mtilphhffqidALDLAPRLLGKFLRRDDVLLQITEveayrpndsachgrfgitartapvfgpggLAYVYLCYGLHTMLNVVADKEGVGAAVLIRscapvsglKTIQQRRAQLtekpvlltgpgkvgqalgistewsnhplympgelncha
Flexible Loop (DISEMBL)
MTILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITeveayrpndsachgRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLtekpvlltgpgkVGQALGIstewsnhplympgelncha
Low Complexity Region (SEG)
MTILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGELNCHA
Disordered region (IsUnstruct)
**ILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYM********
Disordered Region (DISOPRED)
*TILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGELNCHA
Disordered Region (DISEMBL)
MTILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGELNCHA
Disordered Region (DISPRO)
*TILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGELNCH*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGELNCHA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q39147	254	DNA-3-methyladenine glyco	yes	no	0.980	0.582	0.810	6e-69
Q3JEY0	201	Putative 3-methyladenine	yes	no	0.960	0.721	0.571	3e-39
B3QKY6	209	Putative 3-methyladenine	yes	no	0.887	0.641	0.439	6e-25
A3CTY6	192	Putative 3-methyladenine	yes	no	0.900	0.708	0.464	2e-23
Q2IW19	201	Putative 3-methyladenine	yes	no	0.927	0.696	0.446	5e-23
Q824B4	190	Putative 3-methyladenine	yes	no	0.933	0.742	0.430	3e-22
Q8KBD5	209	Putative 3-methyladenine	yes	no	0.867	0.626	0.398	7e-22
A1BI83	196	Putative 3-methyladenine	yes	no	0.933	0.719	0.418	9e-22
B2A7A8	198	Putative 3-methyladenine	yes	no	0.953	0.727	0.397	9e-22
Q1AWF5	190	Putative 3-methyladenine	yes	no	0.708	0.563	0.463	1e-21

>sp|Q39147|3MG_ARATH DNA-3-methyladenine glycosylase OS=Arabidopsis thaliana GN=MAG PE=2 SV=1

 Score =  259 bits (661), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 120/148 (81%), Positives = 135/148 (91%)

Query: 1   MTILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPV 60
           M ++P  FFQIDALDLAPRLLGKF+RRD+V+L+ITEVEAYRPNDSACHGRFG+T RTAPV
Sbjct: 56  MKLMPPEFFQIDALDLAPRLLGKFMRRDNVVLRITEVEAYRPNDSACHGRFGVTPRTAPV 115

Query: 61  FGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLL 120
           FGPGG AYVYLCYGLH MLN+VADKEGVGAAVLIRSC+PVSG++TIQ+RR   T+KPVLL
Sbjct: 116 FGPGGHAYVYLCYGLHMMLNIVADKEGVGAAVLIRSCSPVSGMETIQERRGLKTDKPVLL 175

Query: 121 TGPGKVGQALGISTEWSNHPLYMPGELN 148
            GPGKVGQALG+STEWS+HPLY PG L 
Sbjct: 176 NGPGKVGQALGLSTEWSHHPLYSPGGLE 203

Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, and 7-methylguanine from the damaged DNA polymer formed by alkylation lesions.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: 2EC: 1

>sp|Q3JEY0|3MGH_NITOC Putative 3-methyladenine DNA glycosylase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=Noc_0079 PE=3 SV=1

 Score =  160 bits (405), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 105/147 (71%), Gaps = 2/147 (1%)

Query: 3   ILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYR-PNDSACHGRFGITARTAPVF 61
           +LP  F+  DAL++A  LLG  L R+ V+L+ITEVEAYR P D+A HGR G T R  P++
Sbjct: 4   LLPPRFYARDALEVAADLLGASLCREQVVLRITEVEAYRWPEDTANHGRHGQTLRNEPLW 63

Query: 62  GPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLT 121
           GP G  Y+YLCYG+H +LN+V  +EG  AAVLIR+C PV+GL  IQ+RR     KP LLT
Sbjct: 64  GPPGRVYLYLCYGIHHLLNLVTGEEGQAAAVLIRACEPVAGLDLIQRRRRGKI-KPGLLT 122

Query: 122 GPGKVGQALGISTEWSNHPLYMPGELN 148
           GPGKVG ALG+   W++HPLY PG L 
Sbjct: 123 GPGKVGAALGLDLSWNHHPLYEPGGLE 149

Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) (taxid: 323261)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: -

>sp|B3QKY6|3MGH_CHLP8 Putative 3-methyladenine DNA glycosylase OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0350 PE=3 SV=1

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 86/141 (60%), Gaps = 7/141 (4%)

Query: 1   MTILPHHFFQIDALDLAPRLLGK-FLRRDDVLL----QITEVEAY-RPNDSACHGRFGIT 54
           M  L   F+Q   L+LA RLLGK F+R +D  +    +I E EAY    D ACH   G+T
Sbjct: 1   MKRLGAEFYQAPTLELAERLLGKIFVRCEDTGMVTKARIVETEAYLGEGDEACHAWRGMT 60

Query: 55  ARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLT 114
            R   +FGP G  Y+Y  YG H M+N+V+++EG   AVL+R+  P+ G+  +Q+RR    
Sbjct: 61  NRNRAMFGPPGHLYIYFTYGCHYMINIVSEQEGTAGAVLLRAMEPLEGIDRMQERRGTAD 120

Query: 115 EKPVLLTGPGKVGQALGISTE 135
           E+  L++GPGK+ QALGI  E
Sbjct: 121 ER-ALMSGPGKLAQALGIGPE 140

Chlorobaculum parvum (strain NCIB 8327) (taxid: 517417)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: -

>sp|A3CTY6|3MGH_METMJ Putative 3-methyladenine DNA glycosylase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_0903 PE=3 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 85/142 (59%), Gaps = 6/142 (4%)

Query: 4   LPHHFFQIDALDLAPRLLGKFL-RRDDVLL--QITEVEAYRPNDSACHGRFGITARTAPV 60
           LP  F++ D + +A  LLG  L  R++V    +I EVEAY   D A H   G T R   +
Sbjct: 3   LPAAFYERDTVTVAKDLLGCLLVHREEVTTAGRIVEVEAYLRGDPAAHSYRGTTKRNRVM 62

Query: 61  FGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPV-L 119
           FGP G AYVY  YGLHT +NVV   EG G AVL+R+  PV GL  +Q RR   T+ P+ L
Sbjct: 63  FGPAGHAYVYRIYGLHTCVNVVTGTEGAGEAVLVRALEPVVGLDLMQARRG--TDDPLSL 120

Query: 120 LTGPGKVGQALGISTEWSNHPL 141
            +GPGK+ QALGI+ + +   L
Sbjct: 121 ASGPGKLTQALGITMDLNGTSL 142

Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) (taxid: 368407)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: -

>sp|Q2IW19|3MGH_RHOP2 Putative 3-methyladenine DNA glycosylase OS=Rhodopseudomonas palustris (strain HaA2) GN=RPB_2889 PE=3 SV=1

 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 81/141 (57%), Gaps = 1/141 (0%)

Query: 4   LPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGP 63
           L   FF     ++AP L+G  L  + V   I EVEAY   D A H   G TAR A +FGP
Sbjct: 18  LRRRFFARSVHEVAPELIGATLLVEGVGGVIVEVEAYHHTDPAAHSYGGQTARNAVMFGP 77

Query: 64  GGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGP 123
            G AYVY  YG+H  +NVV + EG  +AVLIR+  P  G++ ++ RR  L +   L +GP
Sbjct: 78  PGFAYVYRSYGIHWCVNVVCEAEGSASAVLIRALQPTHGVEAMRARRG-LDDARSLCSGP 136

Query: 124 GKVGQALGISTEWSNHPLYMP 144
           GK+ QALGIS   +  PL  P
Sbjct: 137 GKLAQALGISIAHNGLPLDAP 157

Rhodopseudomonas palustris (strain HaA2) (taxid: 316058)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: -

>sp|Q824B4|3MGH_CHLCV Putative 3-methyladenine DNA glycosylase OS=Chlamydophila caviae (strain GPIC) GN=CCA_00239 PE=3 SV=1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 87/151 (57%), Gaps = 10/151 (6%)

Query: 3   ILPHHFF-QIDALDLAPRLLGKFLRRDDVLLQIT-----EVEAYR-PNDSACHG-RFGIT 54
           +LP  FF   D L LA  LLG  L    +  +IT     E EAYR P+D ACH   +  T
Sbjct: 1   MLPESFFLHDDVLHLAKELLGHILI-TKISGKITSGFIVETEAYRGPDDKACHAYNYRKT 59

Query: 55  ARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKT-IQQRRAQL 113
            R +P++  GG+AY+Y CYG+H++ NVV  K+ +  AVLIR+  P  G    IQ+R+ Q 
Sbjct: 60  KRNSPMYSRGGIAYIYRCYGMHSLFNVVTAKQDLPHAVLIRAILPYEGEDIMIQRRQWQN 119

Query: 114 TEKPVLLTGPGKVGQALGISTEWSNHPLYMP 144
             K +L  GPGKV QAL ++ E + H L  P
Sbjct: 120 KPKHLLTNGPGKVCQALNLTLEHNTHALTSP 150

Chlamydophila caviae (strain GPIC) (taxid: 227941)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: -

>sp|Q8KBD5|3MGH_CHLTE Putative 3-methyladenine DNA glycosylase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=CT1853 PE=3 SV=1

 Score =  102 bits (255), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 84/138 (60%), Gaps = 7/138 (5%)

Query: 1   MTILPHHFFQIDALDLAPRLLGKFLRRDDVLLQIT-----EVEAYRPN-DSACHGRFGIT 54
           M  L   F+Q+  + LA RLLGK     +V  ++T     E EAY  + D ACH   G+T
Sbjct: 1   MKRLGADFYQMPTILLAERLLGKIFVHHEVSGRVTKGRIVETEAYLGDGDEACHAWRGMT 60

Query: 55  ARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLT 114
            R   +FGP G  Y+Y  YG H + N+V++++G+  AVL+R+  P+ G++ +Q+RR    
Sbjct: 61  ERNHVMFGPPGHLYIYFSYGCHYLANIVSEQKGIAGAVLLRAMEPIEGIEWMQERRGTTD 120

Query: 115 EKPVLLTGPGKVGQALGI 132
           E+  L++GPGK+ QALG+
Sbjct: 121 ER-ALMSGPGKLTQALGL 137

Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: -

>sp|A1BI83|3MGH_CHLPD Putative 3-methyladenine DNA glycosylase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=Cpha266_2098 PE=3 SV=1

 Score =  102 bits (254), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 87/148 (58%), Gaps = 7/148 (4%)

Query: 1   MTILPHHFFQIDALDLAPRLLGK-FLRR--DDVLLQ--ITEVEAY-RPNDSACHGRFGIT 54
           M I+P HFF+   L+LA +LLGK F+RR  D + L+  I E EAY    D A H   G T
Sbjct: 1   MPIVPKHFFERPTLELAEKLLGKIFVRRISDTIRLKGRIVETEAYCGEFDEASHAWRGKT 60

Query: 55  ARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLT 114
            R + +F   G+ YVYL YG H MLN+V++ E +  AVLIR+  P+ GL  ++++R    
Sbjct: 61  TRNSMMFNSPGMLYVYLAYGSHYMLNIVSEPENIPGAVLIRAMEPIDGLMFMKEQRGTAL 120

Query: 115 EKPVLLTGPGKVGQALGISTEWSNHPLY 142
               LL+GPGK+ QA  I  + +   L+
Sbjct: 121 ATS-LLSGPGKLTQAFAIRGDCNGKDLF 147

Chlorobium phaeobacteroides (strain DSM 266) (taxid: 290317)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: -

>sp|B2A7A8|3MGH_NATTJ Putative 3-methyladenine DNA glycosylase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=Nther_0710 PE=3 SV=1

 Score =  102 bits (254), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 83/151 (54%), Gaps = 7/151 (4%)

Query: 4   LPHHFFQIDALDLAPRLLGKFLRR----DDVLLQITEVEAY-RPNDSACHG-RFGITART 57
           L + FFQ DA+ +A  L+GK L R    ++++ +I + EAY  P D  CH  +   T RT
Sbjct: 3   LDYEFFQRDAVSVAKDLIGKLLVRNLNGEELICRIVDTEAYCGPEDKGCHAYQNKRTNRT 62

Query: 58  APVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKP 117
             ++  GG  YVYL YGLH   NVV  K+    AV IR+  P+SGLKT++  R   + K 
Sbjct: 63  EVMYKSGGYVYVYLIYGLHYCFNVVVSKQDRPEAVFIRAGEPISGLKTMRDNRNIKSNKK 122

Query: 118 VLLT-GPGKVGQALGISTEWSNHPLYMPGEL 147
             LT GPGK+ QA+ I    +   L    E+
Sbjct: 123 TELTNGPGKLSQAMAIDKSLNGQDLVASKEI 153

Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) (taxid: 457570)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: -

>sp|Q1AWF5|3MGH_RUBXD Putative 3-methyladenine DNA glycosylase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=Rxyl_1309 PE=3 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 70/110 (63%), Gaps = 3/110 (2%)

Query: 34  ITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVL 93
           I E EAYRP D ACH   G + R   +FG  GLAYVYL YG+H +LN V + EGVG+AVL
Sbjct: 21  IVETEAYRPEDPACHAYRGPSMRNRTLFGGPGLAYVYLSYGMHRLLNAVCEGEGVGSAVL 80

Query: 94  IRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYM 143
           IRS AP+ G+  +++RR +  +   L  GPG++ ++LG+      H L +
Sbjct: 81  IRSLAPLEGVPLMRRRRGRAAD---LCNGPGRLAESLGVGLSLDGHDLTL 127

Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) (taxid: 266117)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
255579017	258	DNA-3-methyladenine glycosylase, putativ	0.966	0.565	0.904	1e-72
224139902	198	predicted protein [Populus trichocarpa]	0.980	0.747	0.864	1e-70
357137891	262	PREDICTED: DNA-3-methyladenine glycosyla	0.966	0.557	0.849	9e-69
223974919	261	unknown [Zea mays]	0.966	0.559	0.849	1e-68
326521346	262	predicted protein [Hordeum vulgare subsp	0.966	0.557	0.849	3e-68
356572126	276	PREDICTED: DNA-3-methyladenine glycosyla	0.980	0.536	0.844	9e-68
413939147	263	DNA-3-methyladenine glycosylase [Zea may	0.966	0.555	0.842	1e-67
357510003	271	DNA-3-methyladenine glycosylase [Medicag	0.940	0.523	0.873	2e-67
115448991	286	Os02g0774500 [Oryza sativa Japonica Grou	0.960	0.506	0.855	3e-67
242066702	263	hypothetical protein SORBIDRAFT_04g03470	0.960	0.551	0.848	3e-67

>gi|255579017|ref|XP_002530360.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] gi|223530107|gb|EEF32021.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis]

 Score =  277 bits (708), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/146 (90%), Positives = 137/146 (93%)

Query: 3   ILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFG 62
           ILP  FFQIDALDLAPRLLGKFLRRDDV+LQITEVEAYRPNDSACHGRFG+TARTAPVFG
Sbjct: 63  ILPSQFFQIDALDLAPRLLGKFLRRDDVILQITEVEAYRPNDSACHGRFGVTARTAPVFG 122

Query: 63  PGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTG 122
           PGG AYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAP+SGL TIQQRR Q TEKPVLLTG
Sbjct: 123 PGGHAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPISGLDTIQQRRGQKTEKPVLLTG 182

Query: 123 PGKVGQALGISTEWSNHPLYMPGELN 148
           PGK+GQALGISTEWS+HPLY PG L 
Sbjct: 183 PGKIGQALGISTEWSSHPLYSPGGLE 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139902|ref|XP_002323332.1| predicted protein [Populus trichocarpa] gi|222867962|gb|EEF05093.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/148 (86%), Positives = 137/148 (92%)

Query: 1   MTILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPV 60
           MTILP  FFQIDALDLAPRLLGKFL+RD+V+LQITEVEAYRPNDSACHGRFGITARTAPV
Sbjct: 1   MTILPREFFQIDALDLAPRLLGKFLKRDNVVLQITEVEAYRPNDSACHGRFGITARTAPV 60

Query: 61  FGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLL 120
           FGPGG AYVYLCYGLHTMLNVVADKEG+GAAVLIRSCAP+SG+ TIQ+RR Q TEKP LL
Sbjct: 61  FGPGGHAYVYLCYGLHTMLNVVADKEGIGAAVLIRSCAPISGMDTIQERRGQKTEKPALL 120

Query: 121 TGPGKVGQALGISTEWSNHPLYMPGELN 148
            GPGK+GQALGISTEWSNHPL+ PG L 
Sbjct: 121 NGPGKIGQALGISTEWSNHPLHSPGGLE 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357137891|ref|XP_003570532.1| PREDICTED: DNA-3-methyladenine glycosylase-like [Brachypodium distachyon]

 Score =  264 bits (675), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 124/146 (84%), Positives = 134/146 (91%)

Query: 4   LPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGP 63
           LP  FF++DALDLAPRLLGK LRRD V+L+ITEVEAYRPNDSACHGRFGITARTAPVFGP
Sbjct: 68  LPREFFEVDALDLAPRLLGKLLRRDQVVLRITEVEAYRPNDSACHGRFGITARTAPVFGP 127

Query: 64  GGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGP 123
           GG AYVYLCYGLH MLNVVADKEG+GAAVLIRSCAPVSGL+ IQQRR Q TEKP+LLTGP
Sbjct: 128 GGHAYVYLCYGLHMMLNVVADKEGIGAAVLIRSCAPVSGLEIIQQRRGQQTEKPILLTGP 187

Query: 124 GKVGQALGISTEWSNHPLYMPGELNC 149
           GKVGQALG+ST+WSNHPLY+PG L  
Sbjct: 188 GKVGQALGLSTDWSNHPLYIPGGLEV 213

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223974919|gb|ACN31647.1| unknown [Zea mays]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/146 (84%), Positives = 135/146 (92%)

Query: 4   LPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGP 63
           LP HFF++DALDLAPRLLGK LRRD+V+L+ITEVEAYRPNDSACHGRFGITARTAPVFGP
Sbjct: 66  LPRHFFEVDALDLAPRLLGKLLRRDEVVLRITEVEAYRPNDSACHGRFGITARTAPVFGP 125

Query: 64  GGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGP 123
           GG AYVYLCYGLH MLNVVAD EGVGAAVLIRSC+PVSGL+TIQ+RR Q TEKP+LLTGP
Sbjct: 126 GGHAYVYLCYGLHMMLNVVADIEGVGAAVLIRSCSPVSGLETIQRRRGQQTEKPILLTGP 185

Query: 124 GKVGQALGISTEWSNHPLYMPGELNC 149
           GKVGQALG+ST+WSNHPLY PG L  
Sbjct: 186 GKVGQALGLSTDWSNHPLYAPGGLEV 211

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326521346|dbj|BAJ96876.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 124/146 (84%), Positives = 133/146 (91%)

Query: 4   LPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGP 63
           LP  FF++DALDLAPRLLGK LRRD V+L+ITEVEAYRPNDSACHGRFGITARTAPVFGP
Sbjct: 68  LPREFFEVDALDLAPRLLGKLLRRDQVVLRITEVEAYRPNDSACHGRFGITARTAPVFGP 127

Query: 64  GGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGP 123
           GG AYVYLCYGLH MLNVVADKEGVGAAVLIR+CAPVSGL+ IQQRR Q TEKP+LLTGP
Sbjct: 128 GGHAYVYLCYGLHMMLNVVADKEGVGAAVLIRACAPVSGLEIIQQRRGQQTEKPILLTGP 187

Query: 124 GKVGQALGISTEWSNHPLYMPGELNC 149
           GKVGQALG+ST+WSNHPLY PG L  
Sbjct: 188 GKVGQALGLSTDWSNHPLYTPGGLEV 213

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572126|ref|XP_003554221.1| PREDICTED: DNA-3-methyladenine glycosylase-like [Glycine max]

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 125/148 (84%), Positives = 132/148 (89%)

Query: 1   MTILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPV 60
           M  L   FFQIDALDLAPRLLGKFLRRDDV+L+ITEVEAYRPNDSACHGRFG+T+RTAPV
Sbjct: 79  MKTLTLDFFQIDALDLAPRLLGKFLRRDDVVLRITEVEAYRPNDSACHGRFGVTSRTAPV 138

Query: 61  FGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLL 120
           FGPGG AYVYLCYGLH MLNVVADKEG GAAVLIRSC+PVSGL  IQQRR   TEKP+LL
Sbjct: 139 FGPGGHAYVYLCYGLHMMLNVVADKEGAGAAVLIRSCSPVSGLDVIQQRRGLKTEKPILL 198

Query: 121 TGPGKVGQALGISTEWSNHPLYMPGELN 148
           TGPGKVGQALG+STEWSNHPLY PG L 
Sbjct: 199 TGPGKVGQALGLSTEWSNHPLYTPGGLE 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413939147|gb|AFW73698.1| DNA-3-methyladenine glycosylase [Zea mays]

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 123/146 (84%), Positives = 134/146 (91%)

Query: 4   LPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGP 63
           LP  FF++DALDLAPRLLGK LRRD+V+L+ITEVEAYRPNDSACHGRFGITARTAPVFGP
Sbjct: 68  LPRDFFEVDALDLAPRLLGKLLRRDEVVLRITEVEAYRPNDSACHGRFGITARTAPVFGP 127

Query: 64  GGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGP 123
           GG AYVYLCYGLH MLNVVAD EGVGAAVLIRSC+PVSGL+TIQ+RR Q TEKP+LLTGP
Sbjct: 128 GGHAYVYLCYGLHMMLNVVADIEGVGAAVLIRSCSPVSGLETIQRRRGQQTEKPILLTGP 187

Query: 124 GKVGQALGISTEWSNHPLYMPGELNC 149
           GKVGQALG+ST+WSNHPLY PG L  
Sbjct: 188 GKVGQALGLSTDWSNHPLYAPGGLEV 213

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510003|ref|XP_003625290.1| DNA-3-methyladenine glycosylase [Medicago truncatula] gi|355500305|gb|AES81508.1| DNA-3-methyladenine glycosylase [Medicago truncatula]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/142 (87%), Positives = 129/142 (90%)

Query: 4   LPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGP 63
           LP  FFQIDALDLAPRLLGKFLRRDDV+LQITEVEAYR NDSA HGRFGIT RTAPVFGP
Sbjct: 76  LPREFFQIDALDLAPRLLGKFLRRDDVVLQITEVEAYRSNDSASHGRFGITPRTAPVFGP 135

Query: 64  GGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGP 123
           GG AYVYLCYGLHTMLNVVADKEGVGA VLIRSCAP+ GL  IQQRR Q T+KP+LLTGP
Sbjct: 136 GGHAYVYLCYGLHTMLNVVADKEGVGAGVLIRSCAPICGLDVIQQRRGQKTDKPILLTGP 195

Query: 124 GKVGQALGISTEWSNHPLYMPG 145
           GKVGQALG+STEWSNHPLY PG
Sbjct: 196 GKVGQALGLSTEWSNHPLYTPG 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115448991|ref|NP_001048275.1| Os02g0774500 [Oryza sativa Japonica Group] gi|113537806|dbj|BAF10189.1| Os02g0774500 [Oryza sativa Japonica Group] gi|215766797|dbj|BAG99025.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  259 bits (662), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/145 (85%), Positives = 133/145 (91%)

Query: 4   LPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGP 63
           LP  FF++DALDLAPRLLGK LRRD+V+L+ITEVEAYRPNDSACHGRFGITARTAPVFG 
Sbjct: 92  LPRDFFEVDALDLAPRLLGKLLRRDEVVLRITEVEAYRPNDSACHGRFGITARTAPVFGS 151

Query: 64  GGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGP 123
           GG AYVYLCYGLH MLNVVADKEGVGAAVLIRSCAPVSGL TIQQRR Q T+KP+LLTGP
Sbjct: 152 GGHAYVYLCYGLHMMLNVVADKEGVGAAVLIRSCAPVSGLATIQQRRGQQTDKPLLLTGP 211

Query: 124 GKVGQALGISTEWSNHPLYMPGELN 148
           GKVGQALG+ST+WSNHPLY PG L 
Sbjct: 212 GKVGQALGLSTDWSNHPLYTPGGLE 236

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242066702|ref|XP_002454640.1| hypothetical protein SORBIDRAFT_04g034700 [Sorghum bicolor] gi|241934471|gb|EES07616.1| hypothetical protein SORBIDRAFT_04g034700 [Sorghum bicolor]

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 123/145 (84%), Positives = 132/145 (91%)

Query: 4   LPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGP 63
           LP  FF++DALDL PRLLGK LRRD+V+L+ITEVEAYRPNDSACHGRFGITARTAPVFGP
Sbjct: 69  LPRDFFEVDALDLGPRLLGKLLRRDEVVLRITEVEAYRPNDSACHGRFGITARTAPVFGP 128

Query: 64  GGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGP 123
           GG AYVYLCYGLH MLNVVAD EGVGAAVLIRSC+PVSGL TIQQRR Q TEKP+LLTGP
Sbjct: 129 GGHAYVYLCYGLHMMLNVVADIEGVGAAVLIRSCSPVSGLATIQQRRGQQTEKPILLTGP 188

Query: 124 GKVGQALGISTEWSNHPLYMPGELN 148
           GKVGQALG+ST+WSNHPLY PG L 
Sbjct: 189 GKVGQALGLSTDWSNHPLYTPGGLE 213

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2088639	254	AT3G12040 [Arabidopsis thalian	0.973	0.578	0.816	6e-64
TIGR_CMR|CHY_1567	191	CHY_1567 "DNA-3-methyladenine	0.913	0.722	0.419	3.9e-21
TIGR_CMR|BA_0869	205	BA_0869 "methylpurine-DNA glyc	0.847	0.624	0.4	2.9e-16
TIGR_CMR|ECH_0277	180	ECH_0277 "DNA-3-methyladenine	0.827	0.694	0.379	2e-15
MGI|MGI:97073	333	Mpg "N-methylpurine-DNA glycos	0.874	0.396	0.395	1.6e-14
RGD|3106	317	Mpg "N-methylpurine-DNA glycos	0.887	0.422	0.394	4.7e-14
UNIPROTKB|P23571	317	Mpg "DNA-3-methyladenine glyco	0.887	0.422	0.394	4.7e-14
UNIPROTKB|E2QZX3	278	MPG "Uncharacterized protein"	0.874	0.474	0.389	4.9e-14
UNIPROTKB|A2IDA3	251	MPG "N-methylpurine-DNA glycos	0.920	0.553	0.365	6.2e-14
UNIPROTKB|G5E9E2	281	MPG "N-methylpurine-DNA glycos	0.920	0.494	0.365	6.9e-14

TAIR|locus:2088639 AT3G12040 [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 120/147 (81%), Positives = 135/147 (91%)

Query:     1 MTILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPV 60
             M ++P  FFQIDALDLAPRLLGKF+RRD+V+L+ITEVEAYRPNDSACHGRFG+T RTAPV
Sbjct:    56 MKLMPPEFFQIDALDLAPRLLGKFMRRDNVVLRITEVEAYRPNDSACHGRFGVTPRTAPV 115

Query:    61 FGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLL 120
             FGPGG AYVYLCYGLH MLN+VADKEGVGAAVLIRSC+PVSG++TIQ+RR   T+KPVLL
Sbjct:   116 FGPGGHAYVYLCYGLHMMLNIVADKEGVGAAVLIRSCSPVSGMETIQERRGLKTDKPVLL 175

Query:   121 TGPGKVGQALGISTEWSNHPLYMPGEL 147
              GPGKVGQALG+STEWS+HPLY PG L
Sbjct:   176 NGPGKVGQALGLSTEWSHHPLYSPGGL 202

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0003905 "alkylbase DNA N-glycosylase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006284 "base-excision repair" evidence=IEA;ISS

TIGR_CMR|CHY_1567 CHY_1567 "DNA-3-methyladenine glycosylase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 60/143 (41%), Positives = 79/143 (55%)

Query:     3 ILPHHFFQIDALDLAPRLLGKFLRRD---DVLL-QITEVEAYRPNDSACHGRFGITARTA 58
             +LP  F+  D L +A  LL  +L R+    +L+ +I E EAY  ND ACH   G T R  
Sbjct:     2 LLPRQFYARDVLIVAKDLLNCYLVREYNGHLLIGKIVETEAYHQNDPACHAYRGKTKRNE 61

Query:    59 PVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPV 118
              +FGP G AYVY  YG+H   NVV    G   AVLIR+  PV G+  I+  R   +E+  
Sbjct:    62 VMFGPPGHAYVYFTYGMHYCFNVVTGAIGRAEAVLIRALEPVKGIDIIKTLRGGKSERE- 120

Query:   119 LLTGPGKVGQALGISTEWSNHPL 141
             LL+GP K+ Q L I  + + H L
Sbjct:   121 LLSGPAKLTQGLAIDLKLNGHDL 143

GO:0006281 "DNA repair" evidence=ISS

GO:0019104 "DNA N-glycosylase activity" evidence=ISS

TIGR_CMR|BA_0869 BA_0869 "methylpurine-DNA glycosylase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 58/145 (40%), Positives = 80/145 (55%)

Query:     5 PHHFFQIDALDLAPRLLGKFL-------RRDDVLLQITEVEAYR-PNDSACHGRFGI-TA 55
             P  F++ D L++A +LLG+ L       +R  +   I EVEAY+ P+D A H   G  T 
Sbjct:     4 PPSFYEGDTLEVAKKLLGQKLVHIVNGIKRSGI---IVEVEAYKGPDDKAAHSYGGRRTD 60

Query:    56 RTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTE 115
             RT  +FG  G AYVYL YG++   NV+    G    VLIR+  PV G++ I+  R   T+
Sbjct:    61 RTEVMFGAPGHAYVYLIYGMYHCFNVITAPVGTPQGVLIRALEPVDGIEEIKLARYNKTD 120

Query:   116 --KPV---LLTGPGKVGQALGISTE 135
               K     L  GPGK+ +ALGI+ E
Sbjct:   121 ITKAQYKNLTNGPGKLCRALGITLE 145

GO:0006281 "DNA repair" evidence=ISS

GO:0019104 "DNA N-glycosylase activity" evidence=ISS

TIGR_CMR|ECH_0277 ECH_0277 "DNA-3-methyladenine glycosylase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 52/137 (37%), Positives = 76/137 (55%)

Query:     3 ILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAY-RPNDSACHGRFGITARTAPVF 61
             IL   F++  +L +A +LLGK L  +     ITE EAY   +D A H   G T RT+ +F
Sbjct:     5 ILKKSFYEQSSLTVAGKLLGKKLLFNQHQGIITETEAYIGQDDPAAHSARGYTKRTSVMF 64

Query:    62 GPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLT 121
             G  G +YVY  YG++  LNVV ++EG  AAVLIR      G+  + + +        ++ 
Sbjct:    65 GSPGFSYVYFIYGMYYCLNVVTEQEGFPAAVLIR------GIVLLSENKPN-----TIIN 113

Query:   122 GPGKVGQALGISTEWSN 138
             GPGK+ + L I+ E +N
Sbjct:   114 GPGKLCKILQITKEHNN 130

GO:0006281 "DNA repair" evidence=ISS

GO:0019104 "DNA N-glycosylase activity" evidence=ISS

MGI|MGI:97073 Mpg "N-methylpurine-DNA glycosylase" [Mus musculus (taxid:10090)]

 Score = 189 (71.6 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 59/149 (39%), Positives = 76/149 (51%)

Query:     8 FFQIDALDLAPRLLGKFL-RR--DDVLLQ--ITEVEAYR-PNDSACHGRFGI-TARTAPV 60
             FF   A+ LA   LG+ L RR  D   L+  I E EAY  P D A H R G  T R   +
Sbjct:   110 FFDQPAVTLARAFLGQVLVRRLADGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGM 169

Query:    61 FGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPV-- 118
             F   G  YVYL YG++  LNV    +G GA VL+R+  P+ GL+T++Q R  L +  V  
Sbjct:   170 FMKPGTLYVYLIYGMYFCLNV--SSQGAGACVLLRALEPLEGLETMRQLRNSLRKSTVGR 227

Query:   119 ------LLTGPGKVGQALGISTEWSNHPL 141
                   L +GP K+ QAL I   +    L
Sbjct:   228 SLKDRELCSGPSKLCQALAIDKSFDQRDL 256

GO:0003677 "DNA binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003905 "alkylbase DNA N-glycosylase activity" evidence=IMP;IDA

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006284 "base-excision repair" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008152 "metabolic process" evidence=IDA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0043916 "DNA-7-methylguanine glycosylase activity" evidence=IEA

GO:0052821 "DNA-7-methyladenine glycosylase activity" evidence=IEA

GO:0052822 "DNA-3-methylguanine glycosylase activity" evidence=IEA

RGD|3106 Mpg "N-methylpurine-DNA glycosylase" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 60/152 (39%), Positives = 77/152 (50%)

Query:     5 PHHFFQIDALDLAPRLLGKFL-RR--DDVLLQ--ITEVEAYR-PNDSACHGRFGI-TART 57
             P +F Q  A+ LA   LG+ L RR  D   L+  I E EAY  P D A H R G  T R 
Sbjct:    94 PEYFDQ-PAVTLARAFLGQVLVRRLADGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRN 152

Query:    58 APVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKP 117
               +F   G  YVYL YG++  LNV    +G GA VL+R+  P+ GL+T++Q R  L +  
Sbjct:   153 RGMFMKPGTLYVYLIYGMYFCLNV--SSQGAGACVLLRALEPLEGLETMRQLRNSLRKST 210

Query:   118 V--------LLTGPGKVGQALGISTEWSNHPL 141
             V        L  GP K+ QAL  S  +    L
Sbjct:   211 VGRSLKDRELCNGPSKLCQALARSKSFDQRDL 242

GO:0003677 "DNA binding" evidence=IEA

GO:0003905 "alkylbase DNA N-glycosylase activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA

GO:0006284 "base-excision repair" evidence=IEA;ISO

GO:0008152 "metabolic process" evidence=ISO

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA

GO:0043916 "DNA-7-methylguanine glycosylase activity" evidence=IEA

GO:0052821 "DNA-7-methyladenine glycosylase activity" evidence=IEA

GO:0052822 "DNA-3-methylguanine glycosylase activity" evidence=IEA

UNIPROTKB|P23571 Mpg "DNA-3-methyladenine glycosylase" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 60/152 (39%), Positives = 77/152 (50%)

Query:     5 PHHFFQIDALDLAPRLLGKFL-RR--DDVLLQ--ITEVEAYR-PNDSACHGRFGI-TART 57
             P +F Q  A+ LA   LG+ L RR  D   L+  I E EAY  P D A H R G  T R 
Sbjct:    94 PEYFDQ-PAVTLARAFLGQVLVRRLADGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRN 152

Query:    58 APVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKP 117
               +F   G  YVYL YG++  LNV    +G GA VL+R+  P+ GL+T++Q R  L +  
Sbjct:   153 RGMFMKPGTLYVYLIYGMYFCLNV--SSQGAGACVLLRALEPLEGLETMRQLRNSLRKST 210

Query:   118 V--------LLTGPGKVGQALGISTEWSNHPL 141
             V        L  GP K+ QAL  S  +    L
Sbjct:   211 VGRSLKDRELCNGPSKLCQALARSKSFDQRDL 242

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2QZX3 MPG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 58/149 (38%), Positives = 79/149 (53%)

Query:     8 FFQIDALDLAPRLLGKFL-RR-DD---VLLQITEVEAYR-PNDSACHGRFGI-TARTAPV 60
             FF   A+ LA   LG+ L RR DD   +  +I E EAY  P D A H R G  T R   +
Sbjct:    70 FFDQPAVALARAFLGQVLVRRLDDGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGM 129

Query:    61 FGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL----TEK 116
             F   G  YVY+ YG++  LNV    +G GA VL+R+  P+ GL+T++Q R+ L    T +
Sbjct:   130 FMKPGTLYVYIIYGMYFCLNV--SSQGDGACVLLRALEPLGGLETMRQLRSTLRKGTTGR 187

Query:   117 PV----LLTGPGKVGQALGISTEWSNHPL 141
              +    L +GP K+ QAL I   +    L
Sbjct:   188 ALKDRELCSGPSKLCQALAIDKSFDQRDL 216

GO:0006284 "base-excision repair" evidence=IEA

GO:0003905 "alkylbase DNA N-glycosylase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|A2IDA3 MPG "N-methylpurine-DNA glycosylase" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 57/156 (36%), Positives = 81/156 (51%)

Query:     1 MTILPHHFFQIDALDLAPRLLGKFL-RR----DDVLLQITEVEAYR-PNDSACHGRFGI- 53
             +T L   FF   A+ LA   LG+ L RR     ++  +I E EAY  P D A H R G  
Sbjct:    66 LTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQ 125

Query:    54 TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
             T R   +F   G  YVY+ YG++  +N+    +G GA VL+R+  P+ GL+T++Q R+ L
Sbjct:   126 TPRNRGMFMKPGTLYVYIIYGMYFCMNI--SSQGDGACVLLRALEPLEGLETMRQLRSTL 183

Query:   114 ---TEKPVL-----LTGPGKVGQALGISTEWSNHPL 141
                T   VL      +GP K+ QAL I+  +    L
Sbjct:   184 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDL 219

GO:0003677 "DNA binding" evidence=IEA

GO:0003905 "alkylbase DNA N-glycosylase activity" evidence=IEA

GO:0006284 "base-excision repair" evidence=IEA

UNIPROTKB|G5E9E2 MPG "N-methylpurine-DNA glycosylase, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 6.9e-14, P = 6.9e-14
 Identities = 57/156 (36%), Positives = 81/156 (51%)

Query:     1 MTILPHHFFQIDALDLAPRLLGKFL-RR----DDVLLQITEVEAYR-PNDSACHGRFGI- 53
             +T L   FF   A+ LA   LG+ L RR     ++  +I E EAY  P D A H R G  
Sbjct:    66 LTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQ 125

Query:    54 TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
             T R   +F   G  YVY+ YG++  +N+    +G GA VL+R+  P+ GL+T++Q R+ L
Sbjct:   126 TPRNRGMFMKPGTLYVYIIYGMYFCMNI--SSQGDGACVLLRALEPLEGLETMRQLRSTL 183

Query:   114 ---TEKPVL-----LTGPGKVGQALGISTEWSNHPL 141
                T   VL      +GP K+ QAL I+  +    L
Sbjct:   184 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDL 219

GO:0003677 "DNA binding" evidence=IEA

GO:0003905 "alkylbase DNA N-glycosylase activity" evidence=IEA

GO:0006284 "base-excision repair" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39147	3MG_ARATH	3, ., 2, ., 2, ., 2, 1	0.8108	0.9801	0.5826	yes	no
Q3JEY0	3MGH_NITOC	3, ., 2, ., 2, ., -	0.5714	0.9602	0.7213	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XVI0187	hypothetical protein (198 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.X.1153.1	hypothetical protein; Excises uracil residues from the DNA which can arise as a result of misin [...] (216 aa)							•		0.672
	eugene3.27440001	Peptide exporter, ABC transporter family protein (648 aa)	•						•		0.554
	gw1.130.69.1	N-acetyl-gamma-glutamyl-phosphate reductase (EC-1.2.1.38) (352 aa)	•								0.503
	gw1.XVI.1419.1	hypothetical protein (428 aa)							•		0.502
	estExt_fgenesh4_pm.C_LG_II0485	argininosuccinate lyase (EC-4.3.2.1) (461 aa)	•								0.501
	estExt_Genewise1_v1.C_2320006	hypothetical protein (482 aa)	•								0.466
	gw1.V.1402.1	SubName- Full=Putative uncharacterized protein; (326 aa)	•								0.443

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
TIGR00567	192	TIGR00567, 3mg, DNA-3-methyladenine glycosylase (3	4e-66
pfam02245	185	pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosy	3e-58
cd00540	187	cd00540, AAG, Alkyladenine DNA glycosylase catalyz	1e-55
PRK00802	188	PRK00802, PRK00802, 3-methyladenine DNA glycosylas	3e-49
COG2094	200	COG2094, Mpg, 3-methyladenine DNA glycosylase [DNA	2e-47

>gnl|CDD|129658 TIGR00567, 3mg, DNA-3-methyladenine glycosylase (3mg)

 Score =  199 bits (507), Expect = 4e-66
 Identities = 74/151 (49%), Positives = 94/151 (62%), Gaps = 7/151 (4%)

Query: 4   LPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-ITAR 56
           +P  FFQ DA+ LAPRLLG+ L R      +V  +I E EAY  P DSA H R G  T R
Sbjct: 1   MPPEFFQQDAVTLAPRLLGQLLVRRLDKGTEVRGRIVETEAYMGPEDSAAHSRGGRQTPR 60

Query: 57  TAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEK 116
           T  +FGP G  YVY+ YG+H MLNVVA  EGV AAVLIR+  P+ GL+ +++RR +  + 
Sbjct: 61  TRGMFGPPGRLYVYIIYGMHYMLNVVAAPEGVPAAVLIRALEPLEGLELMRERRGRSLKD 120

Query: 117 PVLLTGPGKVGQALGISTEWSNHPLYMPGEL 147
             L  GPGK+ QALGI+  ++   L  P  L
Sbjct: 121 RELTNGPGKLCQALGITMSFNGRDLIQPSAL 151

This families are based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). All proteins in this family for which the function is known are involved in the base excision repair of alkylation damage to DNA. The exact specificty of the type of alkylation damage repaired by each of these varies somewhat between species. Substrates include 3-methyl adenine, 7-methyl-guanaine, and 3-methyl-guanine [DNA metabolism, DNA replication, recombination, and repair]. Length = 192

>gnl|CDD|216945 pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosylase (MPG)

 Score =  178 bits (455), Expect = 3e-58
 Identities = 69/149 (46%), Positives = 86/149 (57%), Gaps = 8/149 (5%)

Query: 5   PHHFFQIDALDLAPRLLGKFLRRDD----VLLQITEVEAYR-PNDSACHGRFGITARTAP 59
           P  FF  D L++A  LLGK L R      +  +I E EAY  P+D A H   G T R A 
Sbjct: 1   PREFFARDTLEVARDLLGKVLVRRLPGGTLSGRIVETEAYLGPDDPASHAYRGRTPRNAV 60

Query: 60  VFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVL 119
           +FGP G AYVYL YG+H  LNVV + EGV AAVLIR+  P+ GL  +++RR    ++   
Sbjct: 61  MFGPPGHAYVYLIYGMHHCLNVVTEPEGVPAAVLIRAIEPLEGLDLMRRRRG--GKRERD 118

Query: 120 LT-GPGKVGQALGISTEWSNHPLYMPGEL 147
           LT GPGK+ QALGI    +   L  P  L
Sbjct: 119 LTNGPGKLCQALGIDRSHNGRDLTGPPPL 147

Methylpurine-DNA glycosylase is a base excision-repair protein. It is responsible for the hydrolysis of the deoxyribose N-glycosidic bond, excising 3-methyladenine and 3-methylguanine from damaged DNA. Length = 185

>gnl|CDD|187726 cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair

 Score =  172 bits (438), Expect = 1e-55
 Identities = 66/145 (45%), Positives = 80/145 (55%), Gaps = 6/145 (4%)

Query: 8   FFQIDALDLAPRLLGKFLRRDD----VLLQITEVEAYR-PNDSACHGRFGITARTAPVFG 62
           FF  DAL++A  LLGK L R      +  +I E EAY  P+D A H   G T R   +FG
Sbjct: 1   FFDRDALEVARELLGKVLVRRLPGGVLSGRIVETEAYLGPDDPASHAYRGRTTRREAMFG 60

Query: 63  PGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTG 122
           P G AYVYL YG+H  LNVV   EG  AAVLIR+  P+ GL  +++RR        L  G
Sbjct: 61  PPGTAYVYLIYGMHHCLNVVTGPEGEPAAVLIRALEPLEGLDLMRRRR-GKKRGRELTNG 119

Query: 123 PGKVGQALGISTEWSNHPLYMPGEL 147
           PGK+ QALGI    +   L  P  L
Sbjct: 120 PGKLCQALGIDKSLNGLDLTDPSGL 144

Alkyladenine DNA glycosylase (AAG), also known as 3-methyladenine DNA glycosylase, catalyzes the first step in base excision repair (BER) by cleaving damaged DNA bases within double-stranded DNA to produce an abasic site. AAG bends DNA by intercalating between the base pairs, causing the damaged base to flip out of the double helix and into the enzyme active site for cleavage. Although AAG represents one of six DNA glycosylase classes, it lacks the helix-hairpin-helix active site motif associated with other BER glycosylases and is structurally distinct from them. Length = 187

>gnl|CDD|234840 PRK00802, PRK00802, 3-methyladenine DNA glycosylase; Reviewed

 Score =  156 bits (396), Expect = 3e-49
 Identities = 65/149 (43%), Positives = 83/149 (55%), Gaps = 2/149 (1%)

Query: 1   MTILPHHFFQIDALDLAPRLLGKFLR-RDDVLLQITEVEAYR-PNDSACHGRFGITARTA 58
              LP  FF  DAL++A  LLGK L     V  +I E EAY   +D A H   G T RT 
Sbjct: 2   GMPLPREFFARDALEVARDLLGKVLVHEGGVSGRIVETEAYIGADDPASHSYRGRTPRTE 61

Query: 59  PVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPV 118
            +FGP G AYVY  YG+H  LNVV   EG GAAVLIR+  P+ G+  +++RR     +  
Sbjct: 62  VMFGPPGHAYVYFIYGMHHCLNVVCGPEGTGAAVLIRALEPLEGIALMRRRRGGKRPEKN 121

Query: 119 LLTGPGKVGQALGISTEWSNHPLYMPGEL 147
           L  GPGK+ +ALGI+   +   L+    L
Sbjct: 122 LCNGPGKLCKALGITLADNGADLFDASPL 150

Length = 188

>gnl|CDD|225005 COG2094, Mpg, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]

 Score =  152 bits (385), Expect = 2e-47
 Identities = 69/153 (45%), Positives = 85/153 (55%), Gaps = 8/153 (5%)

Query: 1   MTILPHHFFQIDALDLAPRLLGKFLRRDD----VLLQITEVEAYR-PNDSACHGRFGITA 55
           +  LP  FF  D L +A  LLGK L R         +I E EAY  P+D ACH   G T 
Sbjct: 3   LMPLPRSFFARDTLVVARELLGKTLVRRIGGLTTSGRIVETEAYLGPDDPACHAYRGRTK 62

Query: 56  RTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTE 115
           R   +FGP G AYVY  YG+H  LNVV   EG+ AAVLIR+  P  G++ ++QRR     
Sbjct: 63  RNRAMFGPPGHAYVYRIYGMHYCLNVVTGPEGIPAAVLIRAIEPEEGIEPMRQRRGV--R 120

Query: 116 KPVLLT-GPGKVGQALGISTEWSNHPLYMPGEL 147
              LLT GPGK+ +ALGI+ E +   L  P E 
Sbjct: 121 VLRLLTNGPGKLCKALGITREDNGADLINPSEP 153

Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
PRK00802	188	3-methyladenine DNA glycosylase; Reviewed	100.0
TIGR00567	192	3mg DNA-3-methyladenine glycosylase (3mg). This fa	100.0
PF02245	184	Pur_DNA_glyco: Methylpurine-DNA glycosylase (MPG);	100.0
cd00540	179	AAG Alkyladenine DNA glycosylase (AAG), also known	100.0
COG2094	200	Mpg 3-methyladenine DNA glycosylase [DNA replicati	100.0
KOG4486	261	consensus 3-methyladenine DNA glycosylase [Replica	100.0

>PRK00802 3-methyladenine DNA glycosylase; Reviewed

Probab=100.00  E-value=7.4e-72  Score=450.06  Aligned_cols=150  Identities=43%  Similarity=0.659  Sum_probs=141.2

Q ss_pred             CCCCCccccCCCHHhHHhhhcCCeEEEc-CeeEEEEeeeccC-CCCCCccCCCCCCCccccccCCCCeEEEEEeccceee
Q 031868            1 MTILPHHFFQIDALDLAPRLLGKFLRRD-DVLLQITEVEAYR-PNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTM   78 (151)
Q Consensus         1 m~~L~~~ff~~~~~~vA~~LLG~~Lv~~-~~~grIVETEAY~-~~D~AsHa~~grT~R~~~mf~~~G~~YVY~~YGmh~c   78 (151)
                      +++|+++||++|+++||++||||+|+++ .++|||||||||. ++|||||||+|||+||++||++|||+|||++||||||
T Consensus         2 ~~~l~~~Ff~~~~~~vA~~LLGk~Lv~~~~~~grIvETEAY~G~~D~A~Ha~~grT~Rn~~mf~~~G~~YVY~~YG~h~~   81 (188)
T PRK00802          2 GMPLPREFFARDALEVARDLLGKVLVHEGGVSGRIVETEAYIGADDPASHSYRGRTPRTEVMFGPPGHAYVYFIYGMHHC   81 (188)
T ss_pred             CCccCHHHHCCCHHHHHHHhCCCEEEECCEEEEEEEEEecccCCCCccccccCCCChhhHHHcCCCceEEEEEecCceeE
Confidence            3568999999999999999999999995 6789999999999 8999999999999999999999999999999999999


Q ss_pred             eeEEeCCCCCccEEEecccccCCCHHHHHHHhcCCCCCCccCCChhHHHHHhCCCcccCCCCCCCCCCceee
Q 031868           79 LNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGELNCH  150 (151)
Q Consensus        79 lNivt~~~g~~~aVLIRA~eP~~G~~~m~~rR~~~~~~~~L~~GPgkL~~ALgI~~~~~g~~l~~~~~l~~~  150 (151)
                      |||||+++|+|+||||||+||++|++.|++||+.+...++|||||||||||||||+++||+||+.+++|||+
T Consensus        82 lNvVt~~~g~~~aVLIRA~ep~~g~~~m~~~R~~~~~~~~L~nGPGkL~~AlgI~~~~~g~~l~~~~~l~i~  153 (188)
T PRK00802         82 LNVVCGPEGTGAAVLIRALEPLEGIALMRRRRGGKRPEKNLCNGPGKLCKALGITLADNGADLFDASPLYIE  153 (188)
T ss_pred             EEEEECCCCCccEEEEEeccccccHHHHHHhcccCCcccccccCHHHHHHHhCCCHHHCCCcccCCCCEEEe
Confidence            999999999999999999999999999999995444457899999999999999999999999877889985

>TIGR00567 3mg DNA-3-methyladenine glycosylase (3mg)

Probab=100.00  E-value=1.7e-71  Score=449.16  Aligned_cols=147  Identities=50%  Similarity=0.761  Sum_probs=138.0

Q ss_pred             CCccccCCCHHhHHhhhcCCeEEEcC----e-eEEEEeeeccC-CCCCCccCCCCC-CCccccccCCCCeEEEEEeccce
Q 031868            4 LPHHFFQIDALDLAPRLLGKFLRRDD----V-LLQITEVEAYR-PNDSACHGRFGI-TARTAPVFGPGGLAYVYLCYGLH   76 (151)
Q Consensus         4 L~~~ff~~~~~~vA~~LLG~~Lv~~~----~-~grIVETEAY~-~~D~AsHa~~gr-T~R~~~mf~~~G~~YVY~~YGmh   76 (151)
                      |+++||++|+++||++||||+|+++.    . +|+|||||||. ++|||||||+|| |+||++||++||++|||++||||
T Consensus         1 l~~~Ff~~~~~~vA~~LLGk~Lv~~~~~g~~~~grIvEtEAY~G~~D~A~Ha~~grrT~Rn~~mfg~~G~~YVY~~YGmh   80 (192)
T TIGR00567         1 MPPEFFQQDAVTLAPRLLGQLLVRRLDKGTEVRGRIVETEAYMGPEDSAAHSRGGRQTPRTRGMFGPPGRLYVYIIYGMH   80 (192)
T ss_pred             CCHHHhcCCHHHHHHHhCCCEEEEECCCCcEEEEEEEEEecccCCCCccccccCCCCCcchHHHccCCceEEEEEecCCE
Confidence            68899999999999999999999862    3 69999999999 999999999996 99999999999999999999999


Q ss_pred             eeeeEEeCCCCCccEEEecccccCCCHHHHHHHhcCCCCCCccCCChhHHHHHhCCCcccCCCCCCCCCCceee
Q 031868           77 TMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGELNCH  150 (151)
Q Consensus        77 ~clNivt~~~g~~~aVLIRA~eP~~G~~~m~~rR~~~~~~~~L~~GPgkL~~ALgI~~~~~g~~l~~~~~l~~~  150 (151)
                      |||||||+++|.|+||||||+||++|++.|++||+.....++|||||||||||||||+++||+||+++++||++
T Consensus        81 ~~lNvVt~~~g~p~aVLIRA~ep~~G~~~m~~~R~~~~~~~~L~nGPGkL~~ALgI~~~~ng~~l~~~~~l~i~  154 (192)
T TIGR00567        81 YMLNVVAAPEGVPAAVLIRALEPLEGLELMRERRGRSLKDRELTNGPGKLCQALGITMSFNGRDLIQPSALWLE  154 (192)
T ss_pred             EEEEEEECCCCCccEEEEEeccccCchHHHHHhcCCCccccccccCHHHHHHHhCCCHHHCCCcccCCCceEEe
Confidence            99999999999999999999999999999999997654346899999999999999999999999887789985

This families are based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). All proteins in this family for which the function is known are involved in the base excision repair of alkylation damage to DNA. The exact specificty of the type of alkylation damage repaired by each of these varies somewhat between species. Substrates include 3-methyl adenine, 7-methyl-guanaine, and 3-methyl-guanine.

>PF02245 Pur_DNA_glyco: Methylpurine-DNA glycosylase (MPG); InterPro: IPR003180 Methylpurine-DNA glycosylase is a base excision-repair protein

Probab=100.00  E-value=3.3e-71  Score=444.81  Aligned_cols=144  Identities=44%  Similarity=0.683  Sum_probs=122.7

Q ss_pred             CccccCCCHHhHHhhhcCCeEEEc----CeeEEEEeeeccC-CCCCCccCCCCCCCccccccCCCCeEEEEEeccceeee
Q 031868            5 PHHFFQIDALDLAPRLLGKFLRRD----DVLLQITEVEAYR-PNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTML   79 (151)
Q Consensus         5 ~~~ff~~~~~~vA~~LLG~~Lv~~----~~~grIVETEAY~-~~D~AsHa~~grT~R~~~mf~~~G~~YVY~~YGmh~cl   79 (151)
                      |++||++|+++||++||||.||++    .++|||||||||. ++|||||||+|+|+||++||++|||+|||++|||||||
T Consensus         1 p~~Ff~r~~~~vA~~LLG~~Lv~~~~~~~~~grIvEtEAY~g~~D~AsHa~~g~T~Rn~~mf~~~G~~YVY~~YGmh~cl   80 (184)
T PF02245_consen    1 PRDFFDRDTVEVARDLLGKVLVRRIPGGELSGRIVETEAYLGPEDPASHAYRGRTPRNEVMFGPPGHAYVYLIYGMHHCL   80 (184)
T ss_dssp             --HHHSSBHHHHHHHCTT-EEEEE-TTS-EEEEEEEEEEE-STT-TTSTTGGG--STTGGGGSSTTBEEEEEETTTEEEE
T ss_pred             CcchhccCHHHHHHHhCCCEEEEEeCCCeEEEEEEEEeeccCCCCCcccccCCCCcccHHHcCCCCEEEEEEecCCeeEE
Confidence            689999999999999999999995    4899999999999 89999999999999999999999999999999999999


Q ss_pred             eEEeCCCCCccEEEecccccCCCHHHHHHHhcCCCCCCccCCChhHHHHHhCCCcccCCCCCCCCCCcee
Q 031868           80 NVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGELNC  149 (151)
Q Consensus        80 Nivt~~~g~~~aVLIRA~eP~~G~~~m~~rR~~~~~~~~L~~GPgkL~~ALgI~~~~~g~~l~~~~~l~~  149 (151)
                      ||||+++|.|+||||||+||++|++.|++||+.++ .++|||||||||||||||+++||+||++++.|||
T Consensus        81 Nivt~~~g~~~aVLIRAieP~~G~~~m~~~R~~~~-~~~L~~GPGkL~~ALgI~~~~~g~~l~~~~~l~i  149 (184)
T PF02245_consen   81 NIVTGPEGVPEAVLIRAIEPLEGIELMRARRGGKR-DKNLTNGPGKLCQALGIDRELNGLDLCGDPSLWI  149 (184)
T ss_dssp             EEE-BSTT---EEEEEEEEEEE-HHHHHHHHHHHH-GGGSSSSHHHHHHHTT--GGGTT-BTTT-SSEEE
T ss_pred             eEEecCCCceEEEEEEeccccCCHHHHHHhcCCCC-ccccccCHHHHHHHhCCCHHHCCcccCCCCceEE
Confidence            99999999999999999999999999999998754 5789999999999999999999999999988998

It is responsible for the hydrolysis of the deoxyribose N-glycosidic bond, excising 3-methyladenine and 3-methylguanine from damaged DNA []. Its action is induced by alkylating chemotherapeutics, as well as deaminated and lipid peroxidation-induced purine adducts []. MPG without an N-terminal extension excises hypoxanthine with one-third of the efficiency of full-length MPG under similar conditions, suggesting that is function may largely be attributable to the N-terminal extension [].; GO: 0003677 DNA binding, 0003905 alkylbase DNA N-glycosylase activity, 0006284 base-excision repair; PDB: 1BNK_A 1F6O_A 3QI5_A 3UBY_B 1F4R_A 1EWN_A.

>cd00540 AAG Alkyladenine DNA glycosylase (AAG), also known as 3-methyladenine DNA glycosylase, catalyzes the first step in base excision repair (BER) by cleaving damaged DNA bases within double-stranded DNA to produce an abasic site

Probab=100.00  E-value=1.8e-69  Score=433.33  Aligned_cols=142  Identities=44%  Similarity=0.648  Sum_probs=134.9

Q ss_pred             ccCCCHHhHHhhhcCCeEEEc----CeeEEEEeeeccC-CCCCCccCCCCCCCccccccCCCCeEEEEEeccceeeeeEE
Q 031868            8 FFQIDALDLAPRLLGKFLRRD----DVLLQITEVEAYR-PNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVV   82 (151)
Q Consensus         8 ff~~~~~~vA~~LLG~~Lv~~----~~~grIVETEAY~-~~D~AsHa~~grT~R~~~mf~~~G~~YVY~~YGmh~clNiv   82 (151)
                      ||++|+++||++||||+|+++    .++|||||||||. ++|||||||+|||+||.+||++|||+|||++||||||||||
T Consensus         1 f~~~~~~~vA~~LLGk~Lv~~~~~~~~~grIvEtEAY~G~~D~A~Ha~~gr~~~~~~mfg~~G~~YVY~~YG~h~~lNvV   80 (179)
T cd00540           1 FFNRDTVEVARDLLGKVLVRRLPGGILSGRIVETEAYLGPEDPASHAYRGRTTRRTVMFGPPGHAYVYLIYGMHWCLNVV   80 (179)
T ss_pred             CCCCCHHHHHHHhCCCEEEEECCCCEEEEEEEEEeccCCCCCccccccCCCCccchhhccCCceEEEEeecCCEEEEEEE
Confidence            899999999999999999997    3789999999999 89999999999988888999999999999999999999999


Q ss_pred             eCCCCCccEEEecccccCCCHHHHHHHhcCCCCCCccCCChhHHHHHhCCCcccCCCCCCCCCCceee
Q 031868           83 ADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGELNCH  150 (151)
Q Consensus        83 t~~~g~~~aVLIRA~eP~~G~~~m~~rR~~~~~~~~L~~GPgkL~~ALgI~~~~~g~~l~~~~~l~~~  150 (151)
                      |+++|+|+||||||+||++|++.|++||+.++. ++|||||||||||||||+++||.||++++.|||+
T Consensus        81 t~~~g~~~aVLIRAiEp~~G~~~m~~~R~~~~~-~~L~nGPGkL~~AlgI~~~~ng~~l~~~~~l~i~  147 (179)
T cd00540          81 TGPEGEPAAVLIRALEPLEGLELMRERRGGKRK-RDLTNGPGKLCQALGIDKSLNGADLTDSSPLWLE  147 (179)
T ss_pred             ECCCCCccEEEEEeeccccchhhHHhccCCCcc-CeeccChHHHHHHhCCcHHHCCCccCCCCcEEEe
Confidence            999999999999999999999999999976643 7899999999999999999999999887789985

AAG bends DNA by intercalating between the base pairs, causing the damaged base to flip out of the double helix and into the enzyme active site for cleavage. Although AAG represents one of six DNA glycosylase classes, it lacks the helix-hairpin-helix active site motif associated with the other BER glycosylases and is structurally quite distinct from them.

>COG2094 Mpg 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]

Probab=100.00  E-value=8.5e-67  Score=422.83  Aligned_cols=148  Identities=46%  Similarity=0.687  Sum_probs=140.2

Q ss_pred             CCCCccccCCCHHhHHhhhcCCeEEEc--C--eeEEEEeeeccC-CCCCCccCCCCCCCccccccCCCCeEEEEEeccce
Q 031868            2 TILPHHFFQIDALDLAPRLLGKFLRRD--D--VLLQITEVEAYR-PNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLH   76 (151)
Q Consensus         2 ~~L~~~ff~~~~~~vA~~LLG~~Lv~~--~--~~grIVETEAY~-~~D~AsHa~~grT~R~~~mf~~~G~~YVY~~YGmh   76 (151)
                      +.+|++||.+|+++||++||||.|+|+  +  ++|+|||||||. ++|||||||+|||+||++||++|||+|||++||||
T Consensus         4 ~~~p~~F~~rd~~~vAr~LLG~~lv~~~~g~~~~g~IVEtEAY~G~~D~A~Ha~~GrT~R~~aMf~~~G~~YvY~~~G~h   83 (200)
T COG2094           4 MPLPRSFFARDTLVVARELLGKTLVRRIGGLTTSGRIVETEAYLGPDDPACHAYRGRTKRNRAMFGPPGHAYVYRIYGMH   83 (200)
T ss_pred             ccCCHhhhccCHHHHHHHhcCcEEEEecCCcEEEEEEEEEeEecCCCchhhhhccCcCcccHhhccCCceEEEEEEeccE
Confidence            358999999999999999999999986  3  789999999999 99999999999999999999999999999999999


Q ss_pred             eeeeEEeCCCCCccEEEecccccCCCHHHHHHHhcCCCCCCccCCChhHHHHHhCCCcccCCCCCCCCCC-ceee
Q 031868           77 TMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGE-LNCH  150 (151)
Q Consensus        77 ~clNivt~~~g~~~aVLIRA~eP~~G~~~m~~rR~~~~~~~~L~~GPgkL~~ALgI~~~~~g~~l~~~~~-l~~~  150 (151)
                      |||||||.+||.|+||||||+||++|++.|++||+.+. .++|||||||||||||||+++||.|+.+++. ||+.
T Consensus        84 ~~lNvv~~~eG~p~aVLIRAieP~eg~~~m~~rR~~~~-~~~l~nGPgkLc~ALgI~~~~~g~~l~~~~~~l~l~  157 (200)
T COG2094          84 YCLNVVTGPEGIPAAVLIRAIEPEEGIEPMRQRRGVRV-LRLLTNGPGKLCKALGITREDNGADLINPSEPLWLE  157 (200)
T ss_pred             EEEEEEecCCCCcceEEEEeeccccccchhhhccCccc-cchhccCchHHHHHhCCCHHHcCCcccCCCCceEEe
Confidence            99999999999999999999999999999999998774 4689999999999999999999999888766 8875

>KOG4486 consensus 3-methyladenine DNA glycosylase [Replication, recombination and repair]

Probab=100.00  E-value=6.9e-59  Score=380.63  Aligned_cols=148  Identities=40%  Similarity=0.581  Sum_probs=141.8

Q ss_pred             CCCCCccccCCCHHhHHhhhcCCeEEEcC----eeEEEEeeeccC-CCCCCccCCCC-CCCccccccCCCCeEEEEEecc
Q 031868            1 MTILPHHFFQIDALDLAPRLLGKFLRRDD----VLLQITEVEAYR-PNDSACHGRFG-ITARTAPVFGPGGLAYVYLCYG   74 (151)
Q Consensus         1 m~~L~~~ff~~~~~~vA~~LLG~~Lv~~~----~~grIVETEAY~-~~D~AsHa~~g-rT~R~~~mf~~~G~~YVY~~YG   74 (151)
                      |+.++.+||+.|++++|+.|||+.|+|+.    +.|||||||||+ |+|+|||+.+| +||||+.||++|||+|||+|||
T Consensus        56 m~~mgpEFFqipA~~LArrlLG~~l~RR~~g~~~~gRIvEtEAYlgPeD~AcHsRgGr~TPRn~~mFmk~Gt~YVY~iYG  135 (261)
T KOG4486|consen   56 MMDMGPEFFQIPASQLARRLLGKMLCRRIEGRTTKGRIVETEAYLGPEDKACHSRGGRRTPRNSAMFMKAGTCYVYRIYG  135 (261)
T ss_pred             HhhcChhhhcCchHHHHHHHHHHHHhhhcCCceeeeeEEeeeeecCcchhhhhhcCCccCCCcccccccCceEEEEEeee
Confidence            56789999999999999999999999973    679999999999 99999999998 6999999999999999999999


Q ss_pred             ceeeeeEEeCCCCCccEEEecccccCCCHHHHHHHhcCCCCCCccCCChhHHHHHhCCCcccCCCCCCCCCCceee
Q 031868           75 LHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGELNCH  150 (151)
Q Consensus        75 mh~clNivt~~~g~~~aVLIRA~eP~~G~~~m~~rR~~~~~~~~L~~GPgkL~~ALgI~~~~~g~~l~~~~~l~~~  150 (151)
                      ||+|||||+  +|.+++|||||+||++|+|+|+.||+.+.+++.|+|||+||||||||+++|+.++|..++++|++
T Consensus       136 ~y~c~NIss--~G~GA~VLiRalePl~G~ETmreRrG~~~kdr~L~nGPsKlcQALgi~~e~d~~~La~~e~~wLe  209 (261)
T KOG4486|consen  136 RYECFNISS--VGAGAGVLVRALEPLCGVETMRERRGGRVKDRDLANGPSKLCQALGITREIDKEWLAGSEKIWLE  209 (261)
T ss_pred             ehheeeeec--cccceEEeeeccCcccchHHHHHhcCCCcCChhhhcCcHHHHHHhccccccccccccCCCcEeee
Confidence            999999999  78999999999999999999999999988889999999999999999999999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	151
3qi5_A	219	Crystal Structure Of Human Alkyladenine Dna Glycosy		1e-13
1bnk_A	216	Human 3-Methyladenine Dna Glycosylase Complexed To		3e-13
1f4r_A	219	Crystal Structure Of The Human Aag Dna Repair Glyco		3e-13
1ewn_A	219	Crystal Structure Of The Human Aag Dna Repair Glyco		8e-13

>pdb|3QI5|A Chain A, Crystal Structure Of Human Alkyladenine Dna Glycosylase In Complex With 3,N4-Ethenocystosine Containing Duplex Dna Length = 219

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Query: 1   MTILPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-I 53
           MT L   FF   A+ LA   LG+ L R      ++  +I E EAY  P D A H R G  
Sbjct: 4   MTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQ 63
Query: 54  TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
           T R   +F   G  YVY+ YG++  +N+ +  +G GA VL+R+  P+ GL+T++Q R+ L
Sbjct: 64  TPRNRGMFMKPGTLYVYIIYGMYFCMNISS--QGDGACVLLRALEPLEGLETMRQLRSTL 121
Query: 114 TEKPV--------LLTGPGKVGQALGISTEWSNHPL 141
            +           L +GP K+ QAL I+  +    L
Sbjct: 122 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDL 157

>pdb|1BNK|A Chain A, Human 3-Methyladenine Dna Glycosylase Complexed To Dna Length = 216

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Query: 1   MTILPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-I 53
           +T L   FF   A+ LA   LG+ L R      ++  +I E EAY  P D A H R G  
Sbjct: 4   LTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQ 63
Query: 54  TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
           T R   +F   G  YVY+ YG++  +N+ +  +G GA VL+R+  P+ GL+T++  R+QL
Sbjct: 64  TPRNRGMFMKPGTLYVYIIYGMYFCMNISS--QGDGACVLLRALEPLEGLETMRHVRSQL 121
Query: 114 TEKPV--------LLTGPGKVGQALGISTEWSNHPL 141
            +           L +GP K+ QAL I+  +    L
Sbjct: 122 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDL 157

>pdb|1F4R|A Chain A, Crystal Structure Of The Human Aag Dna Repair Glycosylase Complexed With 1,N6-Ethenoadenine-Dna Length = 219

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Query: 1   MTILPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-I 53
           +T L   FF   A+ LA   LG+ L R      ++  +I E EAY  P D A H R G  
Sbjct: 4   LTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQ 63
Query: 54  TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
           T R   +F   G  YVY+ YG++  +N+ +  +G GA VL+R+  P+ GL+T++Q R+ L
Sbjct: 64  TPRNRGMFMKPGTLYVYIIYGMYFCMNISS--QGDGACVLLRALEPLEGLETMRQLRSTL 121
Query: 114 TEKPV--------LLTGPGKVGQALGISTEWSNHPL 141
            +           L +GP K+ QAL I+  +    L
Sbjct: 122 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDL 157

>pdb|1EWN|A Chain A, Crystal Structure Of The Human Aag Dna Repair Glycosylase Complexed With 1,N6-Ethenoadenine-Dna Length = 219

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Query: 1   MTILPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-I 53
           +T L   FF   A+ LA   LG+ L R      ++  +I E +AY  P D A H R G  
Sbjct: 4   LTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETQAYLGPEDEAAHSRGGRQ 63
Query: 54  TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
           T R   +F   G  YVY+ YG++  +N+ +  +G GA VL+R+  P+ GL+T++Q R+ L
Sbjct: 64  TPRNRGMFMKPGTLYVYIIYGMYFCMNISS--QGDGACVLLRALEPLEGLETMRQLRSTL 121
Query: 114 TEKPV--------LLTGPGKVGQALGISTEWSNHPL 141
            +           L +GP K+ QAL I+  +    L
Sbjct: 122 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDL 157

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
3uby_A	219	DNA-3-methyladenine glycosylase; alkyladenine DNA	2e-38

>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A* Length = 219

 Score =  128 bits (323), Expect = 2e-38
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 17/160 (10%)

Query: 1   MTILPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-I 53
           MT L   FF   A+ LA   LG+ L R      ++  +I E EAY  P D A H R G  
Sbjct: 4   MTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQ 63

Query: 54  TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRR--- 110
           T R   +F   G  YVY+ YG++  +N+    +G GA VL+R+  P+ GL+T++Q R   
Sbjct: 64  TPRNRGMFMKPGTLYVYIIYGMYFCMNIS--SQGDGACVLLRALEPLEGLETMRQLRSTL 121

Query: 111 -----AQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPG 145
                +++ +   L +GP K+ QAL I+  +    L    
Sbjct: 122 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDE 161

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
3uby_A	219	DNA-3-methyladenine glycosylase; alkyladenine DNA	100.0

>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*

Probab=100.00  E-value=1.6e-69  Score=443.77  Aligned_cols=147  Identities=36%  Similarity=0.533  Sum_probs=135.7

Q ss_pred             CCCCccccCCCHHhHHhhhcCCeEEEc---C--eeEEEEeeeccC-CCCCCccCCCC-CCCccccccCCCCeEEEEEecc
Q 031868            2 TILPHHFFQIDALDLAPRLLGKFLRRD---D--VLLQITEVEAYR-PNDSACHGRFG-ITARTAPVFGPGGLAYVYLCYG   74 (151)
Q Consensus         2 ~~L~~~ff~~~~~~vA~~LLG~~Lv~~---~--~~grIVETEAY~-~~D~AsHa~~g-rT~R~~~mf~~~G~~YVY~~YG   74 (151)
                      ++|+++||++|+++||++||||+||++   +  ++|||||||||. ++|||||||+| ||+||++||++|||+|||++||
T Consensus         5 ~~L~~~Ff~r~~~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~G~~D~AsHa~~GrrT~Rn~~MFg~pG~~YVY~~YG   84 (219)
T 3uby_A            5 TRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYG   84 (219)
T ss_dssp             CBCCHHHHCSCHHHHHHHTTTCEEEEECTTSCEEEEEEEEEEEECSTTCTTSTTGGGCCCSGGGGGGSSTTBEEEEEETT
T ss_pred             ccCCHHHHCCCHHHHHHHhCCCEEEEEcCCCCEEEEEEEEEeeccCCCCccccccCCCCCcccHHhcCCCcEEEEEEecC
Confidence            579999999999999999999999995   2  689999999999 99999999998 6999999999999999999999


Q ss_pred             ceeeeeEEeCCCCCccEEEecccccCCCHHHHHHHhcCC--------CCCCccCCChhHHHHHhCCCcccCCCCCCCCCC
Q 031868           75 LHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL--------TEKPVLLTGPGKVGQALGISTEWSNHPLYMPGE  146 (151)
Q Consensus        75 mh~clNivt~~~g~~~aVLIRA~eP~~G~~~m~~rR~~~--------~~~~~L~~GPgkL~~ALgI~~~~~g~~l~~~~~  146 (151)
                      |||||||||+.  +++||||||+||++|++.|++||+.+        ...++|||||||||||||||+++||+||+.++.
T Consensus        85 mh~clNvv~~~--~g~aVLIRA~EP~~G~e~m~~rR~~~~~~~~~~~~~~~~L~~GPGkL~~ALgI~~~~ng~dL~~~~~  162 (219)
T 3uby_A           85 MYFCMNISSQG--DGACVLLRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEA  162 (219)
T ss_dssp             TEEEEEEECSS--TTCEEEEEEEEEEECHHHHHHHHHHC--------CCGGGTSSSHHHHHHHTTCCGGGTTCBTTTCSS
T ss_pred             cEEEEEEEecC--CCCEEEEeccccCccHHHHHHhcccccccccccccccchhcCCHHHHHHHhCCCHHHCCCccCCCCc
Confidence            99999999964  56899999999999999999999632        234689999999999999999999999998888


Q ss_pred             ceee
Q 031868          147 LNCH  150 (151)
Q Consensus       147 l~~~  150 (151)
                      |||+
T Consensus       163 l~l~  166 (219)
T 3uby_A          163 VWLE  166 (219)
T ss_dssp             EEEE
T ss_pred             eEEe
Confidence            9985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1ewna_	214	b.46.1.2 (A:) 3-methyladenine DNA glycosylase (AAG	9e-44

>d1ewna_ b.46.1.2 (A:) 3-methyladenine DNA glycosylase (AAG, ANPG, MPG) {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: All beta proteins
fold: FMT C-terminal domain-like
superfamily: FMT C-terminal domain-like
family: 3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
domain: 3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 9e-44
 Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 17/162 (10%)

Query: 1   MTILPHHFFQIDALDLAPRLLGKFLRRDD-----VLLQITEVEAYR-PNDSACHGRFG-I 53
           +T L   FF   A+ LA   LG+ L R       +  +I E +AY  P D A H R G  
Sbjct: 2   LTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETQAYLGPEDEAAHSRGGRQ 61

Query: 54  TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
           T R   +F   G  YVY+ YG++  +N+    +G GA VL+R+  P+ GL+T++Q R+ L
Sbjct: 62  TPRNRGMFMKPGTLYVYIIYGMYFCMNIS--SQGDGACVLLRALEPLEGLETMRQLRSTL 119

Query: 114 TEKPV--------LLTGPGKVGQALGISTEWSNHPLYMPGEL 147
            +           L +GP K+ QAL I+  +    L     +
Sbjct: 120 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAV 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1ewna_	214	3-methyladenine DNA glycosylase (AAG, ANPG, MPG) {	100.0

>d1ewna_ b.46.1.2 (A:) 3-methyladenine DNA glycosylase (AAG, ANPG, MPG) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: FMT C-terminal domain-like
superfamily: FMT C-terminal domain-like
family: 3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
domain: 3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-69  Score=441.52  Aligned_cols=148  Identities=36%  Similarity=0.553  Sum_probs=137.6

Q ss_pred             CCCCCccccCCCHHhHHhhhcCCeEEEc---C--eeEEEEeeeccC-CCCCCccCCCC-CCCccccccCCCCeEEEEEec
Q 031868            1 MTILPHHFFQIDALDLAPRLLGKFLRRD---D--VLLQITEVEAYR-PNDSACHGRFG-ITARTAPVFGPGGLAYVYLCY   73 (151)
Q Consensus         1 m~~L~~~ff~~~~~~vA~~LLG~~Lv~~---~--~~grIVETEAY~-~~D~AsHa~~g-rT~R~~~mf~~~G~~YVY~~Y   73 (151)
                      |++|+++||++|+++||++||||+|||+   +  ++|+|||||||. ++|||||||+| +|+||++||++|||+|||++|
T Consensus         2 m~~L~~~Ff~r~~~~vA~~LLG~~Lv~~~~~g~~~~g~IvEtEAY~G~~D~A~Ha~~gr~T~Rn~~Mf~~~G~~YVY~~Y   81 (214)
T d1ewna_           2 LTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETQAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIY   81 (214)
T ss_dssp             TTBCCHHHHCSBHHHHHHHHTTCEEEEECTTSCEEEEEEEEEEEECSTTCTTSTTGGGCCCSSSGGGGSSTTBEEEEEET
T ss_pred             CccCCHHHhCCCHHHHHHHhCCCEEEEEcCCCCEEEEEEEEEeccCCCCCchhhccCCCCCchhHHhcCCCceEEEEEec
Confidence            7899999999999999999999999985   2  689999999999 99999999998 599999999999999999999


Q ss_pred             cceeeeeEEeCCCCCccEEEecccccCCCHHHHHHHhcCCC--------CCCccCCChhHHHHHhCCCcccCCCCCCCCC
Q 031868           74 GLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLT--------EKPVLLTGPGKVGQALGISTEWSNHPLYMPG  145 (151)
Q Consensus        74 Gmh~clNivt~~~g~~~aVLIRA~eP~~G~~~m~~rR~~~~--------~~~~L~~GPgkL~~ALgI~~~~~g~~l~~~~  145 (151)
                      ||||||||||  +|+|+||||||+||++|++.|+++|+.+.        +.++|||||||||||||||+++||.+|++++
T Consensus        82 G~h~~lNiv~--~g~~~aVLIRa~eP~~G~~~m~~~R~~~~~~~~~~~~~~~~L~~GPGkL~~ALgI~~~~~g~~l~~~~  159 (214)
T d1ewna_          82 GMYFCMNISS--QGDGACVLLRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDE  159 (214)
T ss_dssp             TTEEEEEEEC--BSTTCEEEEEEEEEEECHHHHHHHTTC--------CCCGGGTSSSHHHHHHHTTCCGGGTTCBTTSCS
T ss_pred             CceEEEEEEe--cCCCceeEEeeccccccHHHHHHhhccccccccccccccccccCChHHHHHHhCCcHhhCCCccCCCC
Confidence            9999999998  47899999999999999999999997642        2467999999999999999999999999999


Q ss_pred             Cceee
Q 031868          146 ELNCH  150 (151)
Q Consensus       146 ~l~~~  150 (151)
                      .+|++
T Consensus       160 ~l~i~  164 (214)
T d1ewna_         160 AVWLE  164 (214)
T ss_dssp             SEEEE
T ss_pred             ceEEe
Confidence            99985