Citrus Sinensis ID: 031899

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MVTIGDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccEEEEcccHHHHHcccccccEEccccccccccccccHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHcccccccccccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cEEEccHHHcccccccccccccccHHHHHHccHHHccccccccHHHHHHHHHcccEEEEcccHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcccccEEccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mvtigdqqrcdnigfisskilsfcpkaslrgnleavgvptsvPVRVAHELLQAGhryldvrtpeefsaghatgainvpymyrvgsgmtknLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAawrqnglptep
Flexible Loop (DISEMBL)
mvtigdqqrcdnigFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEvstrfrkhdeiivgcqsgkRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Low Complexity Region (SEG)
MVTIGDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Disordered region (IsUnstruct)
********RCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR********
Disordered Region (DISOPRED)
*********CDNIGFISSKILSFCPKASL************VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT**
Disordered Region (DISEMBL)
********RCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Disordered Region (DISPRO)
MVT*GDQQRCDNI**ISS**LSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTIGDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q38853	182	Rhodanese-like domain-con	yes	no	0.801	0.664	0.715	2e-47
P27626	183	Senescence-associated pro	N/A	no	0.741	0.612	0.696	6e-44
Q39129	120	Thiosulfate sulfurtransfe	no	no	0.748	0.941	0.690	3e-41
Q9FKW8	136	Thiosulfate sulfurtransfe	no	no	0.715	0.794	0.463	3e-24
Q8RUD6	169	Rhodanese-like domain-con	no	no	0.708	0.633	0.401	4e-20
F4IPI4	156	Rhodanese-like domain-con	no	no	0.927	0.897	0.326	1e-16
Q94A65	224	Rhodanese-like domain-con	no	no	0.721	0.486	0.310	5e-09
Q7MQ91	106	Thiosulfate sulfurtransfe	yes	no	0.629	0.896	0.303	4e-07
Q8DD53	106	Thiosulfate sulfurtransfe	yes	no	0.629	0.896	0.303	4e-07
Q59WH7	438	Adenylyltransferase and s	N/A	no	0.562	0.194	0.333	6e-07

>sp|Q38853|STR15_ARATH Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1

 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 101/123 (82%), Gaps = 2/123 (1%)

Query: 30  RGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGM 87
           RGN+  EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPYMYRVGSGM
Sbjct: 59  RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPYMYRVGSGM 118

Query: 88  TKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGL 147
            KN  F+ +VS+ FRKHDEII+GC+SG+ S MA+TDLL AGF  ITDIAGG+ AW +N L
Sbjct: 119 VKNPSFLRQVSSHFRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGYVAWTENEL 178

Query: 148 PTE 150
           P E
Sbjct: 179 PVE 181

Arabidopsis thaliana (taxid: 3702)

>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1

 Score =  176 bits (445), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 95/112 (84%)

Query: 39  PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 98
           PTSVPVRVA EL QAG+++LDVRTP+EFS GH + AINVPYMYRVGSGM KN  F+ +VS
Sbjct: 71  PTSVPVRVARELAQAGYKHLDVRTPDEFSIGHPSRAINVPYMYRVGSGMVKNPSFLRQVS 130

Query: 99  TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
           + FRKHDEII+GC+SG+RS+MA+T+LL AGF G+TDIAGG+  W +N LP E
Sbjct: 131 SHFRKHDEIIIGCESGERSLMASTELLTAGFTGVTDIAGGYVPWTENELPVE 182

Is thought to act during the early stages of leaf senescence.

Raphanus sativus (taxid: 3726)

>sp|Q39129|STR16_ARATH Thiosulfate sulfurtransferase 16, chloroplastic OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2

 Score =  167 bits (422), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 92/113 (81%)

Query: 38  VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 97
           VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct: 7   VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQV 66

Query: 98  STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
           S+ F + D IIVGCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct: 67  SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 119

Thought to act during the early stages of leaf senescence. Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9FKW8|STR18_ARATH Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18 PE=1 SV=1

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 2/110 (1%)

Query: 41  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVS 98
           SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     G  KN +F+E+VS
Sbjct: 16  SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVS 75

Query: 99  TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 148
           +     D+I+VGCQSG RS+ A T+L+ AG+  + ++ GG+ AW  +  P
Sbjct: 76  SLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNVGGGYLAWVDHSFP 125

Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8RUD6|STR19_ARATH Rhodanese-like domain-containing protein 19, mitochondrial OS=Arabidopsis thaliana GN=STR19 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 63/107 (58%)

Query: 41  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 100
           +V V  A   L  GHRYLDVRT EEF+  H   A+N+PYM++   G   N  F+ +V++ 
Sbjct: 43  TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQVASV 102

Query: 101 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGL 147
            +K + +IV C +G R   A  DLLN G+  + ++ GG++AW   G 
Sbjct: 103 CKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAGF 149

Arabidopsis thaliana (taxid: 3702)

>sp|F4IPI4|STR17_ARATH Rhodanese-like domain-containing protein 17 OS=Arabidopsis thaliana GN=STR17 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 4/144 (2%)

Query: 11  DNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRV--AHELLQAGHRYLDVRTPEEFSA 68
           D++  + S +L F     L     ++  P  + + V  A +LL +G+ +LDVRT EEF  
Sbjct: 2   DSLHVLRSFLLLFIVFNHLPRTTTSMSEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKK 61

Query: 69  GH--ATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN 126
           GH  +    NVPY      G   N  F++ VS+   + D +I+GC+SG RS+ A   L++
Sbjct: 62  GHVDSENVFNVPYWLYTPQGQEINPNFLKHVSSLCNQTDHLILGCKSGVRSLHATKFLVS 121

Query: 127 AGFAGITDIAGGFAAWRQNGLPTE 150
           +GF  + ++ GG+ AW     P +
Sbjct: 122 SGFKTVRNMDGGYIAWVNKRFPVK 145

Arabidopsis thaliana (taxid: 3702)

>sp|Q94A65|STR14_ARATH Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 36/145 (24%)

Query: 41  SVPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVPYMYR----------------- 82
           SV V+ A  L +  +   LDVR   E+ AGH  GAINV  MYR                 
Sbjct: 76  SVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVE-MYRLIREWTAWDIARRLGFA 134

Query: 83  ---VGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG--------------KRSMMAATDLL 125
              + SG  +N +F++ V  +  K  +IIV C S                RS++AA  L+
Sbjct: 135 FFGIFSGTEENPEFIQSVEAKLDKEAKIIVACSSAGTMKPTQNLPEGQQSRSLIAAYLLV 194

Query: 126 NAGFAGITDIAGGFAAWRQNGLPTE 150
             G+  +  + GG   W + GLP E
Sbjct: 195 LNGYKNVFHLEGGIYTWGKEGLPVE 219

Arabidopsis thaliana (taxid: 3702)

>sp|Q7MQ91|GLPE_VIBVY Thiosulfate sulfurtransferase GlpE OS=Vibrio vulnificus (strain YJ016) GN=glpE PE=3 SV=1

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 17/112 (15%)

Query: 42  VPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN--LKFVEEVS 98
           + V+ AH L+  G  R +D+R P+ F+  HA  A +          +T +  + F+++V 
Sbjct: 7   IDVQGAHALISRGEARLVDIRDPQSFAVAHAQSAFH----------LTNDSIVNFMQQVE 56

Query: 99  TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
                   ++V C  G  S  AA  L+N GF  +  + GGF AW +  LP E
Sbjct: 57  FE----QPVLVMCYHGISSQGAAQYLVNQGFEEVYSVDGGFEAWHRASLPVE 104

Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8DD53|GLPE_VIBVU Thiosulfate sulfurtransferase GlpE OS=Vibrio vulnificus (strain CMCP6) GN=glpE PE=3 SV=1

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 17/112 (15%)

Query: 42  VPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN--LKFVEEVS 98
           + V+ AH L+  G  R +D+R P+ F+  HA  A +          +T +  + F+++V 
Sbjct: 7   IDVQGAHALISRGEARLVDIRDPQSFAVAHAQSAFH----------LTNDSIVNFMQQVE 56

Query: 99  TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
                   ++V C  G  S  AA  L+N GF  +  + GGF AW +  LP E
Sbjct: 57  FE----QPVLVMCYHGISSQGAAQYLVNQGFEEVYSVDGGFEAWHRASLPVE 104

Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.

Vibrio vulnificus (taxid: 672)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q59WH7|UBA4_CANAL Adenylyltransferase and sulfurtransferase UBA4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=UBA4 PE=3 SV=1

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 55  HRYLDVRTPEEFSAGHATGAINVPY--MYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ 112
           H  +DVR  E+F   H   AINV +   +R    + +   ++ + ST   K DEI V C+
Sbjct: 344 HILIDVRPREQFQITHLPNAINVQWDPTFRKADAIEQ---YLPDDST---KDDEIYVVCR 397

Query: 113 SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN 145
            G  S +AA  L+  G+  + DI GG   W  +
Sbjct: 398 FGNDSQLAAKKLIGMGYPNVRDIIGGLDKWSDD 430

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Acts by mediating the C-terminal thiocarboxylation of sulfur carrier URM1. Its N-terminus first activates URM1 as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 to form thiocarboxylation (-COSH) of its C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
255579783	182	Senescence-associated protein DIN1, puta	0.894	0.741	0.807	2e-60
224133954	180	predicted protein [Populus trichocarpa]	0.894	0.75	0.829	3e-60
351728052	186	uncharacterized protein LOC100305968 [Gl	0.894	0.725	0.748	8e-54
357483967	185	Senescence-associated protein DIN1 [Medi	0.894	0.729	0.75	3e-53
351726216	185	uncharacterized protein LOC100499831 [Gl	0.894	0.729	0.748	5e-53
388501622	179	unknown [Lotus japonicus]	0.894	0.754	0.727	3e-52
359497218	177	PREDICTED: senescence-associated protein	0.847	0.723	0.765	8e-52
449434108	184	PREDICTED: rhodanese-like domain-contain	0.986	0.809	0.66	8e-48
7340289	150	OP1 [Cucumis sativus]	0.986	0.993	0.66	9e-48
71081904	185	senescence-associated protein [Nicotiana	0.887	0.724	0.686	1e-46

>gi|255579783|ref|XP_002530729.1| Senescence-associated protein DIN1, putative [Ricinus communis] gi|223529693|gb|EEF31635.1| Senescence-associated protein DIN1, putative [Ricinus communis]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/135 (80%), Positives = 122/135 (90%)

Query: 16  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 75
           I+ K +SFCPKA LRGNLEAVGVPTSVPVRVAHELL AGHRYLDVRTPEEFSAGH  GAI
Sbjct: 47  INQKSVSFCPKAGLRGNLEAVGVPTSVPVRVAHELLLAGHRYLDVRTPEEFSAGHVVGAI 106

Query: 76  NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 135
           N+PYMYRVGSGM KN KF+E+VS+ F K++EII+GCQSGKRSMMAATDLL+AG+  +TDI
Sbjct: 107 NIPYMYRVGSGMKKNTKFLEQVSSHFGKYNEIIIGCQSGKRSMMAATDLLSAGYTAVTDI 166

Query: 136 AGGFAAWRQNGLPTE 150
           AGG+AAW QNGLPTE
Sbjct: 167 AGGYAAWTQNGLPTE 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133954|ref|XP_002327720.1| predicted protein [Populus trichocarpa] gi|222836805|gb|EEE75198.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 112/135 (82%), Positives = 119/135 (88%)

Query: 16  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 75
           I+ K LSF PK SLR NLEA G+PTSVPVRVAHEL QAGHRYLDVRTP+EFS GHA GAI
Sbjct: 45  INHKSLSFRPKTSLRWNLEATGIPTSVPVRVAHELHQAGHRYLDVRTPDEFSTGHAAGAI 104

Query: 76  NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 135
           N+PYMYRVGSGMTKN KFVEEVS+ FRKHDEIIVGCQ GKRSMMAATDLL AGF  +TDI
Sbjct: 105 NIPYMYRVGSGMTKNPKFVEEVSSHFRKHDEIIVGCQLGKRSMMAATDLLAAGFTAVTDI 164

Query: 136 AGGFAAWRQNGLPTE 150
           AGGFAAW QNGLPT+
Sbjct: 165 AGGFAAWTQNGLPTD 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728052|ref|NP_001235646.1| uncharacterized protein LOC100305968 [Glycine max] gi|255627141|gb|ACU13915.1| unknown [Glycine max]

 Score =  214 bits (545), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 101/135 (74%), Positives = 117/135 (86%)

Query: 16  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 75
           +  K  +F  +ASL+GNLEA+ VPTSVPVRVA+ELL AGHRYLDVRTPEEF AGHA GAI
Sbjct: 51  VPPKFPNFRREASLQGNLEAIRVPTSVPVRVAYELLLAGHRYLDVRTPEEFDAGHAPGAI 110

Query: 76  NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 135
           N+PYM+RVGSGMTKN  F+ EVS++FRK DEIIVGC+ GKRSMMAA+DLL AGF G+TD+
Sbjct: 111 NIPYMFRVGSGMTKNSNFIREVSSQFRKDDEIIVGCELGKRSMMAASDLLAAGFTGLTDM 170

Query: 136 AGGFAAWRQNGLPTE 150
           AGG+AAW QNGLPTE
Sbjct: 171 AGGYAAWTQNGLPTE 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483967|ref|XP_003612270.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|217071246|gb|ACJ83983.1| unknown [Medicago truncatula] gi|355513605|gb|AES95228.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|388495624|gb|AFK35878.1| unknown [Medicago truncatula]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 102/136 (75%), Positives = 114/136 (83%), Gaps = 1/136 (0%)

Query: 16  ISSKILSFCPKASLRGNLE-AVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA 74
           +  K  +F     L+GNLE  VGVPTSVPVRVAHELL AGH+YLDVRT EEF+AGHA GA
Sbjct: 49  VQPKFSNFRTMCGLKGNLEEVVGVPTSVPVRVAHELLLAGHKYLDVRTTEEFNAGHAPGA 108

Query: 75  INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITD 134
           IN+PYMY+VGSGMTKN  FV+EVS+ FRK DE+IVGCQ GKRSMMAATDLL AGF G+TD
Sbjct: 109 INIPYMYKVGSGMTKNSNFVKEVSSHFRKEDEVIVGCQLGKRSMMAATDLLAAGFTGLTD 168

Query: 135 IAGGFAAWRQNGLPTE 150
           IAGG+AAW QNGLPTE
Sbjct: 169 IAGGYAAWTQNGLPTE 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726216|ref|NP_001236607.1| uncharacterized protein LOC100499831 [Glycine max] gi|255626991|gb|ACU13840.1| unknown [Glycine max]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/135 (74%), Positives = 116/135 (85%)

Query: 16  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 75
           +  K  SF  +A+L+GNLEAV VPTSVPVRVA+ELL AGHRYLDV TPEEF+AGHA GAI
Sbjct: 50  VPPKFPSFRREAALQGNLEAVRVPTSVPVRVAYELLLAGHRYLDVGTPEEFNAGHAPGAI 109

Query: 76  NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 135
           N+PYM+RVGSGMTKN  F+ EVS+ FRK DEIIVGC+ GKRSMMAA+DLL AGF G+TD+
Sbjct: 110 NIPYMFRVGSGMTKNSNFIREVSSNFRKEDEIIVGCELGKRSMMAASDLLAAGFTGLTDM 169

Query: 136 AGGFAAWRQNGLPTE 150
           AGG+AAW QNGLPTE
Sbjct: 170 AGGYAAWTQNGLPTE 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501622|gb|AFK38877.1| unknown [Lotus japonicus]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 114/136 (83%), Gaps = 1/136 (0%)

Query: 16  ISSKILSFCPKASLRGNLEAVGV-PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA 74
           +  K  +F  + ++  NLEAVGV PTSVPVRVAHELL AGH+YLDVRTPEEF AGHA GA
Sbjct: 43  VQPKFQTFRVEGAMNQNLEAVGVVPTSVPVRVAHELLLAGHKYLDVRTPEEFDAGHAPGA 102

Query: 75  INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITD 134
           IN+PYM++VGSGMTKN  FV+E S++FRK DEIIVGCQ GKRSMMAATDLL +GF G+TD
Sbjct: 103 INIPYMFKVGSGMTKNSNFVKEASSQFRKEDEIIVGCQLGKRSMMAATDLLASGFTGVTD 162

Query: 135 IAGGFAAWRQNGLPTE 150
           IAGG+AAW Q GLPTE
Sbjct: 163 IAGGYAAWTQTGLPTE 178

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497218|ref|XP_002271073.2| PREDICTED: senescence-associated protein DIN1-like [Vitis vinifera] gi|296088206|emb|CBI35721.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (528), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/128 (76%), Positives = 107/128 (83%)

Query: 23  FCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYR 82
           FC   + RGNLE+ GVPTSVPVRVA ELLQAGHRYLDVRTPEEFSAGHA+GAINVPYM R
Sbjct: 49  FCRVVAARGNLESTGVPTSVPVRVALELLQAGHRYLDVRTPEEFSAGHASGAINVPYMLR 108

Query: 83  VGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 142
            GSGM KN KF+ EVS+ FRK DEIIVGCQ GKRS+MA  DLL AGF  +TDIAGG+ AW
Sbjct: 109 FGSGMAKNPKFLVEVSSHFRKDDEIIVGCQKGKRSLMAVNDLLAAGFTAVTDIAGGYDAW 168

Query: 143 RQNGLPTE 150
            QNGLPT+
Sbjct: 169 SQNGLPTD 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434108|ref|XP_004134838.1| PREDICTED: rhodanese-like domain-containing protein 15, chloroplastic-like [Cucumis sativus] gi|449491287|ref|XP_004158850.1| PREDICTED: rhodanese-like domain-containing protein 15, chloroplastic-like [Cucumis sativus]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 99/150 (66%), Positives = 111/150 (74%), Gaps = 1/150 (0%)

Query: 1   MVTIGDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDV 60
           M+T G  QR      IS K  S    A LR  LEA  VPTSVPVRVA ELLQAG RYLDV
Sbjct: 35  MIT-GSLQRRRRDSAISYKHWSTSRNAVLREELEATAVPTSVPVRVALELLQAGQRYLDV 93

Query: 61  RTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMA 120
           RTPEE+S GHA GAIN+PYMYRVGSGMT+N  F+ EV+  FRK DEIIVGC SGKRS+MA
Sbjct: 94  RTPEEYSVGHAPGAINIPYMYRVGSGMTRNPHFLAEVAIYFRKDDEIIVGCLSGKRSLMA 153

Query: 121 ATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
           A DLL +G+  +TDIAGG+ AW +NGLP E
Sbjct: 154 AADLLASGYNYVTDIAGGYEAWSRNGLPME 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7340289|gb|AAF61174.1|AF245222_1 OP1 [Cucumis sativus]

 Score =  194 bits (494), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 99/150 (66%), Positives = 111/150 (74%), Gaps = 1/150 (0%)

Query: 1   MVTIGDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDV 60
           M+T G  QR      IS K  S    A LR  LEA  VPTSVPVRVA ELLQAG RYLDV
Sbjct: 1   MIT-GSLQRRRRDSAISYKHWSTSRNAVLREELEATAVPTSVPVRVALELLQAGQRYLDV 59

Query: 61  RTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMA 120
           RTPEE+S GHA GAIN+PYMYRVGSGMT+N  F+ EV+  FRK DEIIVGC SGKRS+MA
Sbjct: 60  RTPEEYSVGHAPGAINIPYMYRVGSGMTRNPHFLAEVAIYFRKDDEIIVGCLSGKRSLMA 119

Query: 121 ATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
           A DLL +G+  +TDIAGG+ AW +NGLP E
Sbjct: 120 AADLLASGYNYVTDIAGGYEAWSRNGLPME 149

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71081904|gb|AAZ23261.1| senescence-associated protein [Nicotiana tabacum]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/134 (68%), Positives = 107/134 (79%)

Query: 17  SSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAIN 76
           S++   F   A++   ++   VPTSVPVRVA ELLQAGHRYLDVRT EEFS GHATGAIN
Sbjct: 51  SNRTPGFSWMATVGEKVQVSTVPTSVPVRVALELLQAGHRYLDVRTAEEFSDGHATGAIN 110

Query: 77  VPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136
           +PYM+R+GSGMTKN  F+E+V   F K DEIIVGCQ GKRS MAATDLL AGF G+TDIA
Sbjct: 111 IPYMFRIGSGMTKNPNFLEQVLKHFGKDDEIIVGCQLGKRSFMAATDLLAAGFTGVTDIA 170

Query: 137 GGFAAWRQNGLPTE 150
           GG+AAW +NGLPT+
Sbjct: 171 GGYAAWTENGLPTD 184

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
UNIPROTKB|B2C7Y6	185	NRIP1 "Chloroplast N receptor-	0.940	0.767	0.650	1e-43
TAIR|locus:2128038	182	SEN1 "AT4G35770" [Arabidopsis	0.801	0.664	0.715	1e-43
TAIR|locus:2156937	120	STR16 "AT5G66040" [Arabidopsis	0.748	0.941	0.690	3.4e-38
TAIR|locus:2156882	138	STR18 "AT5G66170" [Arabidopsis	0.794	0.869	0.432	3.4e-22
TAIR|locus:505006261	169	AT2G21045 [Arabidopsis thalian	0.701	0.627	0.405	1.9e-19
TAIR|locus:2827795	156	AT2G17850 "AT2G17850" [Arabido	0.927	0.897	0.326	2.9e-16
UNIPROTKB|Q607E4	120	MCA1816 "Sulfurtransferase" [M	0.536	0.675	0.468	2.4e-12
UNIPROTKB|Q3Z6P8	144	DET1392 "Sulfurtransferase" [D	0.543	0.569	0.408	1.2e-10
TIGR_CMR|DET_1392	144	DET_1392 "rhodanese-like domai	0.543	0.569	0.408	1.2e-10
UNIPROTKB|Q8ECN1	132	SO_3105 "Periplasmic rhodanese	0.629	0.719	0.339	7.6e-09

UNIPROTKB|B2C7Y6 NRIP1 "Chloroplast N receptor-interacting protein 1" [Nicotiana benthamiana (taxid:4100)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 93/143 (65%), Positives = 109/143 (76%)

Query:     8 QRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFS 67
             Q+  N G  S++   F   A++   ++   VPTSVPVRVA ELLQAGHRYLDVRT EEFS
Sbjct:    43 QKRRNFGN-SNRTPGFSWMATVGEKVQVSTVPTSVPVRVALELLQAGHRYLDVRTAEEFS 101

Query:    68 AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA 127
              GHA GAIN+PYM+R+GSGM KN  F E+V   F K DEIIVGCQ GKRS MAATDLL A
Sbjct:   102 DGHAPGAINIPYMFRIGSGMIKNPNFAEQVLEHFGKDDEIIVGCQLGKRSFMAATDLLAA 161

Query:   128 GFAGITDIAGGFAAWRQNGLPTE 150
             GF+G+TDIAGG+AAW +NGLPT+
Sbjct:   162 GFSGVTDIAGGYAAWTENGLPTD 184

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2128038 SEN1 "AT4G35770" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 88/123 (71%), Positives = 101/123 (82%)

Query:    30 RGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGM 87
             RGN+  EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPYMYRVGSGM
Sbjct:    59 RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPYMYRVGSGM 118

Query:    88 TKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGL 147
              KN  F+ +VS+ FRKHDEII+GC+SG+ S MA+TDLL AGF  ITDIAGG+ AW +N L
Sbjct:   119 VKNPSFLRQVSSHFRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGYVAWTENEL 178

Query:   148 PTE 150
             P E
Sbjct:   179 PVE 181

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=IEP;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2156937 STR16 "AT5G66040" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 78/113 (69%), Positives = 92/113 (81%)

Query:    38 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 97
             VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct:     7 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQV 66

Query:    98 STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
             S+ F + D IIVGCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct:    67 SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 119

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2156882 STR18 "AT5G66170" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 54/125 (43%), Positives = 77/125 (61%)

Query:    28 SLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGS 85
             S+  + +A  V  SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     
Sbjct:     4 SISSSTKAEEV-VSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ 62

Query:    86 GMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 143
             G  KN +F+E+VS+     D+I+VGCQSG RS+ A T+L+ A  G+  + ++ GG+ AW 
Sbjct:    63 GRVKNQEFLEQVSSLLNPADDILVGCQSGARSLKATTELVAAVSGYKKVRNVGGGYLAWV 122

Query:   144 QNGLP 148
              +  P
Sbjct:   123 DHSFP 127

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:505006261 AT2G21045 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 43/106 (40%), Positives = 63/106 (59%)

Query:    41 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 100
             +V V  A   L  GHRYLDVRT EEF+  H   A+N+PYM++   G   N  F+ +V++ 
Sbjct:    43 TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQVASV 102

Query:   101 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 146
              +K + +IV C +G R   A  DLLN G+  + ++ GG++AW   G
Sbjct:   103 CKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAG 148

GO:0005737 "cytoplasm" evidence=ISM

GO:0007568 "aging" evidence=ISS;TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2827795 AT2G17850 "AT2G17850" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 47/144 (32%), Positives = 76/144 (52%)

Query:    11 DNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRV--AHELLQAGHRYLDVRTPEEFSA 68
             D++  + S +L F     L     ++  P  + + V  A +LL +G+ +LDVRT EEF  
Sbjct:     2 DSLHVLRSFLLLFIVFNHLPRTTTSMSEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKK 61

Query:    69 GH--ATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN 126
             GH  +    NVPY      G   N  F++ VS+   + D +I+GC+SG RS+ A   L++
Sbjct:    62 GHVDSENVFNVPYWLYTPQGQEINPNFLKHVSSLCNQTDHLILGCKSGVRSLHATKFLVS 121

Query:   127 AGFAGITDIAGGFAAWRQNGLPTE 150
             +GF  + ++ GG+ AW     P +
Sbjct:   122 SGFKTVRNMDGGYIAWVNKRFPVK 145

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

UNIPROTKB|Q607E4 MCA1816 "Sulfurtransferase" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 44/94 (46%), Positives = 57/94 (60%)

Query:    58 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDE-IIVGCQSGK 115
             LDVR PEE++AGH  GAIN+P       G+   ++F  E    F+ K D  I+V CQSG 
Sbjct:    34 LDVREPEEYAAGHLPGAINIP------RGV---VEFRIETHPVFQGKKDAAIVVYCQSGL 84

Query:   116 RSMMAATDLLNA-GFAGITDIAGGFAAWRQNGLP 148
             RS +A TD+L   G+ G   +AGGF AW + GLP
Sbjct:    85 RSTLA-TDILQQLGWRGTVSMAGGFKAWIEGGLP 117

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z6P8 DET1392 "Sulfurtransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 38/93 (40%), Positives = 50/93 (53%)

Query:    58 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
             LDVRTP E++ GH  GA+N+ Y Y           F   +S  F K    +V C++G RS
Sbjct:    62 LDVRTPSEYAQGHIPGAVNLDY-YA---------SFEASLSA-FDKTKTYLVYCRTGNRS 110

Query:   118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
               AA  +L+ GFA I ++ GG  AW   GLP E
Sbjct:   111 ASAARLMLDNGFAAIYNMQGGINAWISGGLPLE 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1392 DET_1392 "rhodanese-like domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 38/93 (40%), Positives = 50/93 (53%)

Query:    58 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
             LDVRTP E++ GH  GA+N+ Y Y           F   +S  F K    +V C++G RS
Sbjct:    62 LDVRTPSEYAQGHIPGAVNLDY-YA---------SFEASLSA-FDKTKTYLVYCRTGNRS 110

Query:   118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
               AA  +L+ GFA I ++ GG  AW   GLP E
Sbjct:   111 ASAARLMLDNGFAAIYNMQGGINAWISGGLPLE 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ECN1 SO_3105 "Periplasmic rhodanese domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 36/106 (33%), Positives = 55/106 (51%)

Query:    45 RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 104
             +VA E + +G   LDVRTPEEF+AGH   A+N+P+  +V +   K             K 
Sbjct:    38 QVAWEKIASGAMVLDVRTPEEFAAGHLVNAVNIPFE-QVAAEFAKR---------GIAKD 87

Query:   105 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
               +++ C+SG+RS +A   L+ AG+   T   GG+    +    TE
Sbjct:    88 TPVVLYCRSGRRSGIATDALVAAGYTK-TYNGGGYQTLAETQPKTE 132

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38853	STR15_ARATH	No assigned EC number	0.7154	0.8013	0.6648	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.1	0.946
3rd Layer	2.8.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_570018 hypothetical protein (181 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
PLN02160	136	PLN02160, PLN02160, thiosulfate sulfurtransferase	3e-29
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	8e-22
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	3e-20
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	5e-19
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	3e-18
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	1e-17
cd01522	117	cd01522, RHOD_1, Member of the Rhodanese Homology	6e-13
cd01524	90	cd01524, RHOD_Pyr_redox, Member of the Rhodanese H	7e-11
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	5e-10
cd01526	122	cd01526, RHOD_ThiF, Member of the Rhodanese Homolo	8e-10
cd01527	99	cd01527, RHOD_YgaP, Member of the Rhodanese Homolo	1e-09
cd01519	106	cd01519, RHOD_HSP67B2, Member of the Rhodanese Hom	1e-09
cd01528	101	cd01528, RHOD_2, Member of the Rhodanese Homology	3e-09
PRK00162	108	PRK00162, glpE, thiosulfate sulfurtransferase; Val	3e-09
cd01529	96	cd01529, 4RHOD_Repeats, Member of the Rhodanese Ho	3e-08
PRK10287	104	PRK10287, PRK10287, thiosulfate:cyanide sulfurtran	2e-07
cd01444	96	cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and	3e-07
TIGR02981	101	TIGR02981, phageshock_pspE, phage shock operon rho	3e-07
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	6e-07
cd01447	103	cd01447, Polysulfide_ST, Polysulfide-sulfurtransfe	9e-07
COG2897	285	COG2897, SseA, Rhodanese-related sulfurtransferase	1e-06
cd01449	118	cd01449, TST_Repeat_2, Thiosulfate sulfurtransfera	5e-06
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	8e-06
PRK11784	345	PRK11784, PRK11784, tRNA 2-selenouridine synthase;	2e-05
TIGR03167	311	TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine s	3e-05
cd01523	100	cd01523, RHOD_Lact_B, Member of the Rhodanese Homo	3e-05
cd01520	128	cd01520, RHOD_YbbB, Member of the Rhodanese Homolo	9e-05
cd01534	95	cd01534, 4RHOD_Repeat_3, Member of the Rhodanese H	8e-04
cd01533	109	cd01533, 4RHOD_Repeat_2, Member of the Rhodanese H	0.004
cd01521	110	cd01521, RHOD_PspE2, Member of the Rhodanese Homol	0.004

>gnl|CDD|177819 PLN02160, PLN02160, thiosulfate sulfurtransferase

 Score =  103 bits (258), Expect = 3e-29
 Identities = 51/111 (45%), Positives = 70/111 (63%), Gaps = 2/111 (1%)

Query: 41  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVS 98
           SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     G  KN +F+E+VS
Sbjct: 16  SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVS 75

Query: 99  TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 149
           +     D+I+VGCQSG RS+ A T+L+ AG+  + +  GG+ AW  +  P 
Sbjct: 76  SLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPI 126

Length = 136

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 83.7 bits (207), Expect = 8e-22
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 52  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE--VSTRFRKHDEIIV 109
                 LDVR+PEE+  GH  GA+N+P    +      ++   EE        K   ++V
Sbjct: 2   DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVV 61

Query: 110 GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 148
            C+SG RS  AA  L   GF  +  + GG+  W   G P
Sbjct: 62  YCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 78.9 bits (195), Expect = 3e-20
 Identities = 36/98 (36%), Positives = 46/98 (46%), Gaps = 11/98 (11%)

Query: 47  AHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHD 105
             ELL       LDVR PEE++AGH  GAIN+P            L+          K  
Sbjct: 2   LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLS---------ELEE-RAALLELDKDK 51

Query: 106 EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 143
            I+V C+SG RS  AA  L  AG   + ++ GG  AW+
Sbjct: 52  PIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 76.4 bits (188), Expect = 5e-19
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
           +DVR+PEE++ GH  GA+N+P        +   L   EE+  +  K   I+V C SG RS
Sbjct: 17  IDVRSPEEYAKGHIPGAVNIPLSLPSLDKLESEL---EELGKKLDKDKTIVVYCASGNRS 73

Query: 118 MMAATDLL-----NAGFAGITDIAGGFAAWRQ 144
             AA  LL       G+  +  + GGF AW+ 
Sbjct: 74  GQAAALLLALILKALGYKNVYVLDGGFEAWKA 105

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 79.3 bits (196), Expect = 3e-18
 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 14/107 (13%)

Query: 47  AHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHD 105
           A      G   +DVR   E ++G A GA+ +P              F+E  + T     D
Sbjct: 10  ARARAAQGAVLIDVREAHERASGQAEGALRIPR------------GFLELRIETHLPDRD 57

Query: 106 -EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151
            EI++ C SG RS  AA  L   G+  +  +AGGF+AW+  GLP E 
Sbjct: 58  REIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLER 104

Length = 376

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 73.0 bits (179), Expect = 1e-17
 Identities = 38/113 (33%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 40  TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVS 98
           T      A  L       LDVR PEE+  GH  G AIN+P        +++       + 
Sbjct: 6   TISEDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIP--------LSELKAAENLLE 57

Query: 99  TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151
                 D I+V C SG RS  AA  L  AGF  + ++ GG  AW+  GLP   
Sbjct: 58  --LPDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108

Length = 110

>gnl|CDD|238780 cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1

 Score = 61.2 bits (149), Expect = 6e-13
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 11/108 (10%)

Query: 47  AHELLQAGHR--YLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK 103
           A  LLQA  +   +DVRT  E+   G    A++V +  +V   M  N  F+ E+  +  K
Sbjct: 6   AWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAW--QVYPDMEINPNFLAELEEKVGK 63

Query: 104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF------AAWRQN 145
              +++ C+SG RS+ AA     AGF  + ++  GF      A  R  
Sbjct: 64  DRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAGHRGG 111

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Length = 117

>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain superfamily

 Score = 55.0 bits (133), Expect = 7e-11
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 19/88 (21%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR---KHDEIIVGCQSG 114
           +DVRTP+EF  GH  GAIN+P               ++E+  R     K  EIIV C  G
Sbjct: 17  IDVRTPQEFEKGHIKGAINIP---------------LDELRDRLNELPKDKEIIVYCAVG 61

Query: 115 KRSMMAATDLLNAGFAGITDIAGGFAAW 142
            R  +AA  L   GF  + ++ GG+  +
Sbjct: 62  LRGYIAARILTQNGFK-VKNLDGGYKTY 88

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Length = 90

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 56.0 bits (135), Expect = 5e-10
 Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 14/92 (15%)

Query: 54  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE--VSTRFRKHDEIIVGC 111
           G   +DVR P EF+A    GA NVP            L  + E          DE++V C
Sbjct: 274 GVTLIDVREPSEFAAYSIPGAHNVP------------LSAIREGANPPSVSAGDEVVVYC 321

Query: 112 QSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 143
            +G RS  A   L  AG+ G++ + GG   W 
Sbjct: 322 AAGVRSAQAVAILERAGYTGMSSLDGGIEGWL 353

Length = 355

>gnl|CDD|238784 cd01526, RHOD_ThiF, Member of the Rhodanese Homology Domain superfamily

 Score = 53.1 bits (128), Expect = 8e-10
 Identities = 36/108 (33%), Positives = 46/108 (42%), Gaps = 9/108 (8%)

Query: 49  ELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN--LKFVEEVSTRFRKH 104
            +LQAG  H  LDVR    F       AIN+P    +   ++K   LK ++E+     K 
Sbjct: 17  NILQAGKKHVLLDVRPKVHFEICRLPEAINIP----LSELLSKAAELKSLQELPLDNDKD 72

Query: 105 DEIIVGCQSGKRSMMAATDLLNAG-FAGITDIAGGFAAWRQNGLPTEP 151
             I V C+ G  S  A   L   G    + DI GG  AW     PT P
Sbjct: 73  SPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTFP 120

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. Length = 122

>gnl|CDD|238785 cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 14/111 (12%)

Query: 40  TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 99
           T++    A ELL  G   +D+R P+E+      GA  VP            L  +E    
Sbjct: 2   TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVP------------LSQLESEGL 49

Query: 100 RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNGLPT 149
                + II  C+SG R+   A + L A  AG    + GG  AW+  GLP 
Sbjct: 50  PLVGANAIIFHCRSGMRTQQNA-ERLAAISAGEAYVLEGGLDAWKAAGLPV 99

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases. Length = 99

>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain superfamily

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 17/93 (18%)

Query: 59  DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH---------DEIIV 109
           DVR PEE   G   GAIN+P      S +   L   EE    F K           E+I 
Sbjct: 20  DVREPEELKTGKIPGAINIPL-----SSLPDALALSEE---EFEKKYGFPKPSKDKELIF 71

Query: 110 GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 142
            C++G RS  AA    + G+  + +  G +  W
Sbjct: 72  YCKAGVRSKAAAELARSLGYENVGNYPGSWLDW 104

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. Length = 106

>gnl|CDD|238786 cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
           +DVR PEE       G +++P        M++  +  +E+        +I+V C  G RS
Sbjct: 21  IDVREPEELEIAFLPGFLHLP--------MSEIPERSKEL-DSDNPDKDIVVLCHHGGRS 71

Query: 118 MMAATDLLNAGFAGITDIAGGFAAWRQ 144
           M  A  LL  GF  + ++ GG  AW  
Sbjct: 72  MQVAQWLLRQGFENVYNLQGGIDAWSL 98

Subgroup 2 includes uncharacterized putative rhodanese-related domains. Length = 101

>gnl|CDD|178908 PRK00162, glpE, thiosulfate sulfurtransferase; Validated

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 19/111 (17%)

Query: 42  VPVRVAHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 100
           + V  AH+ L + G   +D+R P+ F+ GHA GA ++            N    + +   
Sbjct: 7   INVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHL-----------TN----DSLGAF 51

Query: 101 FRKHD---EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 148
            R+ D    ++V C  G  S  AA  LL  GF  +  I GGF AWR+    
Sbjct: 52  MRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPA 102

Length = 108

>gnl|CDD|238787 cd01529, 4RHOD_Repeats, Member of the Rhodanese Homology Domain superfamily

 Score = 48.1 bits (114), Expect = 3e-08
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 54  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS 113
           G   LDVR  +E++AGH  G  ++P    V              +TR       ++ C  
Sbjct: 12  GTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATR------YVLTCDG 65

Query: 114 GKRSMMAATDLLNAGFAGITDIAGGFAAWR 143
              +  AA +LL  G   +  + GG +AW 
Sbjct: 66  SLLARFAAQELLALGGKPVALLDGGTSAWV 95

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats. Length = 96

>gnl|CDD|182356 PRK10287, PRK10287, thiosulfate:cyanide sulfurtransferase; Provisional

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 25/115 (21%)

Query: 29  LRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT 88
            +  L A+ +  S+P       + A   ++DVR PE++   H  GAIN+P          
Sbjct: 2   FKKGLLALALVFSLP-------VFAAEHWIDVRVPEQYQQEHVQGAINIPL--------- 45

Query: 89  KNLKFVEEVSTRFR-KHDEIIVGCQSGKRSMMAATDLLNAGF------AGITDIA 136
           K +K  E ++T    K+D + + C +G++S  A   L   G+       G+ DIA
Sbjct: 46  KEVK--ERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLKDIA 98

Length = 104

>gnl|CDD|238721 cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 16/101 (15%)

Query: 47  AHELLQAGHR--YLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 102
             ELL AG     LDVR P  ++A   H  GAI++            +   +++      
Sbjct: 7   LAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHL------------DEDSLDDWLGDLD 54

Query: 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 143
           +   ++V C  G  S   A  L  AGF  +  +AGGF AWR
Sbjct: 55  RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine. Length = 96

>gnl|CDD|132026 TIGR02981, phageshock_pspE, phage shock operon rhodanese PspE

 Score = 45.8 bits (108), Expect = 3e-07
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 20/92 (21%)

Query: 51  LQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-----KHD 105
           L A   ++DVR PE++   H  GAIN+P               ++E+          K+D
Sbjct: 15  LFAAEHWIDVRIPEQYQQEHIQGAINIP---------------LKEIKEHIATAVPDKND 59

Query: 106 EIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 137
            + + C +G++S MA   LL+ G+    +  G
Sbjct: 60  TVKLYCNAGRQSGMAKDILLDMGYTHAENAGG 91

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely. Length = 101

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 13/112 (11%)

Query: 44  VRVAHELLQAGHR---YLDVRTPEEFSAGHATGAINVPYM-YRVGSGMTKNLKFVEEVST 99
           V     LL +G      +DVR P E+      G++ VP      G G+ K    V+E+  
Sbjct: 286 VTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEK----VKELL- 340

Query: 100 RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151
                  +I  C+ G RS  A   L  AG  G T++ GG  AW +   P+ P
Sbjct: 341 ---NGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPSVP 388

Length = 390

>gnl|CDD|238724 cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain

 Score = 44.3 bits (105), Expect = 9e-07
 Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 15/110 (13%)

Query: 43  PVRVAHELLQAGHRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVST-- 99
           P      L   G   +DVR P E    G   GA + P       GM   L+F  +  +  
Sbjct: 3   PEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAP------RGM---LEFWADPDSPY 53

Query: 100 ---RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 146
               F +    +  C SG RS +A   L + G   + +I GGF  W++ G
Sbjct: 54  HKPAFAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Length = 103

>gnl|CDD|225450 COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 24/113 (21%)

Query: 58  LDVRTPEEFS----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH--- 104
           +D R+PE F           AGH  GAIN+P+   V  G     K  EE++  +      
Sbjct: 175 IDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLF--KSPEEIARLYADAGID 232

Query: 105 --DEIIVGCQSGKRSMMAATDLLNAGFAGITDI---AGGFAAWRQ-NGLPTEP 151
              E+IV C SG R   A+   L     G  +     G ++ W      P E 
Sbjct: 233 PDKEVIVYCGSGVR---ASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVET 282

Length = 285

>gnl|CDD|238726 cd01449, TST_Repeat_2, Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 28/108 (25%)

Query: 58  LDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMT--KNLKFVEEVSTRFRKH 104
           +D R+PE F            +GH  GA+N+P+     S +      K  EE+   F   
Sbjct: 18  VDARSPERFRGEVPEPRPGLRSGHIPGAVNIPW----TSLLDEDGTFKSPEELRALFAAL 73

Query: 105 -----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAWRQ 144
                  +IV C SG     A   LL     G  ++    G ++ W  
Sbjct: 74  GITPDKPVIVYCGSGVT---ACVLLLALELLGYKNVRLYDGSWSEWGS 118

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue. Length = 118

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 14/131 (10%)

Query: 23  FCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYM 80
           FC   S      A G  +++  R   E L +G +   +DVR P E+   H  GA  +P  
Sbjct: 272 FCGVVSDEAQQAAAG--STITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIP-- 327

Query: 81  YRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 140
                   K+     E   +  +   I++ C++G RS  A   L  AGF+    + GG  
Sbjct: 328 --------KSEILSGEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVV 379

Query: 141 AWRQNGLPTEP 151
           AW +   P+ P
Sbjct: 380 AWAKQVDPSLP 390

Length = 392

>gnl|CDD|236982 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 25/120 (20%)

Query: 49  ELLQAGHRYLDVRTPEEFSAGHATGAINVPYM-----------Y---------RVGSGMT 88
            L       +DVR+P EF+ GH  GAIN+P +           Y          +G  + 
Sbjct: 10  ALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALV 69

Query: 89  -KNLK-FVEEV-STRFRKHDEIIVGC-QSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 144
             N+    EE  +   R +   ++ C + G RS      L  AG   +  + GG+ A+R+
Sbjct: 70  AGNIAAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGID-VPRLEGGYKAYRR 128

Length = 345

>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 24/110 (21%)

Query: 58  LDVRTPEEFSAGHATGAINVPYM-----------Y-RVGSGMTKNL----------KFVE 95
           +DVR+P EF+ GH  GAIN+P +           Y +VG      L            VE
Sbjct: 6   IDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVE 65

Query: 96  EVSTRFRKHDEIIVGC-QSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 144
           +         + ++ C + G RS   A  L   GF  +  + GG+ A+R+
Sbjct: 66  QWRAFADGPPQPLLYCWRGGMRSGSLAWLLAQIGFR-VPRLEGGYKAYRR 114

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene [Protein synthesis, tRNA and rRNA base modification]. Length = 311

>gnl|CDD|238781 cd01523, RHOD_Lact_B, Member of the Rhodanese Homology Domain superfamily

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 43  PVRVAHELLQAGHRY-LDVRTPEEFSAGHATGAINVPY---MYRVGSGMTKNLKFVEEVS 98
           P  +   LL     + LDVR   ++      G  N PY    +         L+  E++ 
Sbjct: 3   PEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDF-------LEIEEDIL 55

Query: 99  TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 142
            +     E+ V C     S   A  L   G+  +  +AGG  AW
Sbjct: 56  DQLPDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAW 98

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain. Length = 100

>gnl|CDD|238778 cd01520, RHOD_YbbB, Member of the Rhodanese Homology Domain superfamily

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 25/120 (20%)

Query: 49  ELLQAGHRYLDVRTPEEFSAGHATGAINVPYM-----YRVG----------------SGM 87
            L +A    +DVR+P+EF  GH  GAIN+P +       VG                  +
Sbjct: 8   ALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELV 67

Query: 88  TKNLK-FVEEVSTRFRKHD-EIIVGC-QSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 144
           +  LK  + E      + D ++++ C + G RS   A  L + G   +  + GG+ A+R+
Sbjct: 68  SGKLKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGID-VPLLEGGYKAYRK 126

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB. Length = 128

>gnl|CDD|238792 cd01534, 4RHOD_Repeat_3, Member of the Rhodanese Homology Domain superfamily, repeat 3

 Score = 36.3 bits (84), Expect = 8e-04
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 58 LDVRTPEEFSAGHATGAINVP 78
           DVRTPEE+ AGH  G  + P
Sbjct: 20 FDVRTPEEYEAGHLPGFRHTP 40

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue. Length = 95

>gnl|CDD|238791 cd01533, 4RHOD_Repeat_2, Member of the Rhodanese Homology Domain superfamily, repeat 2

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 16/74 (21%)

Query: 58  LDVRTPEEFSAGHATGAINVP---YMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG 114
           LD R  +E+      G+++ P    + RVG       +   +  T       I+V C   
Sbjct: 30  LDGRRFDEYRKMTIPGSVSCPGAELVLRVG-------ELAPDPRTP------IVVNCAGR 76

Query: 115 KRSMMAATDLLNAG 128
            RS++ A  L+NAG
Sbjct: 77  TRSIIGAQSLINAG 90

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue. Length = 109

>gnl|CDD|238779 cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain superfamily

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 20/97 (20%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIV-----GCQ 112
           +DVR+ E ++ GH  GAIN+P+            +  E  + +  K    +V     GC 
Sbjct: 29  VDVRSAEAYARGHVPGAINLPHR-----------EICENATAKLDKEKLFVVYCDGPGCN 77

Query: 113 SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 149
              +   AA  L   GF  + ++ GG   W++ G  T
Sbjct: 78  GATK---AALKLAELGFP-VKEMIGGLDWWKREGYAT 110

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
PLN02160	136	thiosulfate sulfurtransferase	99.96
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.95
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.95
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.94
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.94
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.94
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.94
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.94
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.93
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.93
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.93
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.92
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.92
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.92
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.92
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.92
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.92
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.92
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.92
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.92
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.92
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.91
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.91
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.91
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.91
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.91
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.9
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.9
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.9
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.9
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.89
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.89
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.89
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.88
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.88
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.88
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.87
PRK01415	247	hypothetical protein; Validated	99.87
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.87
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.87
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.86
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.86
PRK05320	257	rhodanese superfamily protein; Provisional	99.86
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.85
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.84
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.84
PRK07411	390	hypothetical protein; Validated	99.83
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.82
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.81
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.81
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.81
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.79
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.74
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.68
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.63
COG1054	308	Predicted sulfurtransferase [General function pred	99.5
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.48
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.48
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.42
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.96
COG2603	334	Predicted ATPase [General function prediction only	97.89
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	97.75
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	97.71
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	97.45
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	96.84
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.84
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	96.49
KOG3636	669	consensus Uncharacterized conserved protein, conta	95.91
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.8
KOG1717	343	consensus Dual specificity phosphatase [Defense me	95.17
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	94.49
COG3453	130	Uncharacterized protein conserved in bacteria [Fun	94.22
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	93.66
PLN02727	986	NAD kinase	93.39
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	93.28
PF03853	169	YjeF_N: YjeF-related protein N-terminus; InterPro:	89.64
PF09992	170	DUF2233: Predicted periplasmic protein (DUF2233);	86.95
PF00782	133	DSPc: Dual specificity phosphatase, catalytic doma	86.42
COG2453	180	CDC14 Predicted protein-tyrosine phosphatase [Sign	86.39
COG0062	203	Uncharacterized conserved protein [Function unknow	86.06
PF05706	168	CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3)	85.47
PRK12361	547	hypothetical protein; Provisional	85.01
PTZ00242	166	protein tyrosine phosphatase; Provisional	84.64
COG1891	235	Uncharacterized protein conserved in archaea [Func	84.25
KOG0333	673	consensus U5 snRNP-like RNA helicase subunit [RNA	84.21
PLN03050	246	pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr	82.16
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	81.93
PRK10565	508	putative carbohydrate kinase; Provisional	81.59
TIGR00197	205	yjeF_nterm yjeF N-terminal region. This model is b	81.33
PLN03049	462	pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr	81.17
PF03162	164	Y_phosphatase2: Tyrosine phosphatase family; Inter	80.33
TIGR01587	358	cas3_core CRISPR-associated helicase Cas3. This mo	80.2

>PLN02160 thiosulfate sulfurtransferase

Probab=99.96  E-value=8e-28  Score=161.61  Aligned_cols=113  Identities=45%  Similarity=0.819  Sum_probs=96.4

Q ss_pred             ccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCc--eeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChh
Q 031899           39 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  116 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~  116 (151)
                      ...++++++.++++++..|||||++.||..||||||  +|+|+..+.....+.+.+++......++++++||+||++|.|
T Consensus        14 ~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~R   93 (136)
T PLN02160         14 VVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGAR   93 (136)
T ss_pred             eeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcHH
Confidence            457899999998887788999999999999999999  899985444344455555555554446788999999999999


Q ss_pred             HHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          117 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      |..++..|...||++|++|.||+.+|.++|+|+++
T Consensus        94 S~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  128 (136)
T PLN02160         94 SLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQ  128 (136)
T ss_pred             HHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccc
Confidence            99999999999999999999999999999999864

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.1e-27  Score=152.95  Aligned_cols=114  Identities=41%  Similarity=0.707  Sum_probs=105.1

Q ss_pred             CCccccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCC-CCeEEEEeCCC
Q 031899           37 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK-HDEIIVGCQSG  114 (151)
Q Consensus        37 ~~~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iv~~c~~g  114 (151)
                      ..+..++.++++++.+.+ .++||||.++||..||+|.+||||+......+.+.+++|.+......++ ++.|||+|.+|
T Consensus        20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG   99 (136)
T KOG1530|consen   20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASG   99 (136)
T ss_pred             CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccC
Confidence            556789999999999987 9999999999999999999999999877788889999999998877765 56999999999


Q ss_pred             hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899          115 KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       115 ~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      .|+..|...|..+||+||.++.|||.+|.+.++|..
T Consensus       100 ~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~  135 (136)
T KOG1530|consen  100 VRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK  135 (136)
T ss_pred             cchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence            999999999999999999999999999999998864

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.95  E-value=7.3e-27  Score=148.94  Aligned_cols=98  Identities=31%  Similarity=0.491  Sum_probs=86.1

Q ss_pred             cccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHH
Q 031899           40 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  119 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~  119 (151)
                      ..++++++.++++++.+|||+|++.+|..||||||+|+|+..            +......++++++||+||++|.++..
T Consensus         2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~------------~~~~~~~~~~~~~iv~~c~~g~~s~~   69 (99)
T cd01527           2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLSQ------------LESEGLPLVGANAIIFHCRSGMRTQQ   69 (99)
T ss_pred             CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChhH------------hcccccCCCCCCcEEEEeCCCchHHH
Confidence            357899999888878899999999999999999999999842            22222336788999999999999999


Q ss_pred             HHHHHHHCCCCceeEccccHHHHHhCCCCC
Q 031899          120 AATDLLNAGFAGITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       120 ~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv  149 (151)
                      ++..|++.||+++++|+||+.+|..+|+|+
T Consensus        70 ~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~   99 (99)
T cd01527          70 NAERLAAISAGEAYVLEGGLDAWKAAGLPV   99 (99)
T ss_pred             HHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence            999999999999999999999999999985

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.94  E-value=1.8e-26  Score=149.69  Aligned_cols=98  Identities=23%  Similarity=0.372  Sum_probs=84.0

Q ss_pred             CCccccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEEeC
Q 031899           37 GVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQ  112 (151)
Q Consensus        37 ~~~~~i~~~~~~~~~~~~--~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~c~  112 (151)
                      .....++++++.++++++  .+|||||++.||..||||||+|+|+            ..+......+  +++++||+||+
T Consensus         7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~------------~~l~~~~~~l~~~~~~~ivv~C~   74 (109)
T cd01533           7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPG------------AELVLRVGELAPDPRTPIVVNCA   74 (109)
T ss_pred             ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCH------------HHHHHHHHhcCCCCCCeEEEECC
Confidence            344678999999888754  6899999999999999999999999            3444444444  45789999999


Q ss_pred             CChhHHHHHHHHHHCCCCc-eeEccccHHHHHhCC
Q 031899          113 SGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNG  146 (151)
Q Consensus       113 ~g~~a~~~~~~L~~~G~~~-v~~l~GG~~~W~~~g  146 (151)
                      +|.||..++..|+..||+| ++.|+||+.+|..+|
T Consensus        75 ~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          75 GRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             CCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence            9999999999999999988 999999999999876

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.94  E-value=2.4e-26  Score=148.82  Aligned_cols=101  Identities=32%  Similarity=0.497  Sum_probs=90.1

Q ss_pred             ccccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhH
Q 031899           39 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  117 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a  117 (151)
                      .+.++++++.++++. +.+|||+|++.||..||||||+|+|+            ..+......+++++++++||.+|.++
T Consensus         4 ~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~~s   71 (108)
T PRK00162          4 FECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTN------------DSLGAFMRQADFDTPVMVMCYHGNSS   71 (108)
T ss_pred             ccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCH------------HHHHHHHHhcCCCCCEEEEeCCCCCH
Confidence            467899999988754 58999999999999999999999998            44555556678899999999999999


Q ss_pred             HHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      ..++..|+..||+|+++|+||+.+|..+++|++.
T Consensus        72 ~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~  105 (108)
T PRK00162         72 QGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA  105 (108)
T ss_pred             HHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence            9999999999999999999999999999999863

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.94  E-value=9.1e-27  Score=173.78  Aligned_cols=146  Identities=20%  Similarity=0.301  Sum_probs=113.8

Q ss_pred             cccccCccccccccccccccCccccCcc--c-------ccC-CccccCHHHHHHHHhC-CCEEEecCChhhHh-------
Q 031899            6 DQQRCDNIGFISSKILSFCPKASLRGNL--E-------AVG-VPTSVPVRVAHELLQA-GHRYLDVRTPEEFS-------   67 (151)
Q Consensus         6 ~~~~~~~v~~l~gg~~~w~~~~~~~~~~--~-------~~~-~~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~-------   67 (151)
                      ...++++|.+|+||+..|..........  .       ... .....+.+++....+. ++.|||+|++.||.       
T Consensus       109 ~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~  188 (281)
T PRK11493        109 RTFGVEKVSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPR  188 (281)
T ss_pred             HHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCC
Confidence            4578999999999999998753211111  0       000 1123455555545444 48899999999995       


Q ss_pred             ----cCCCCCceeeccccccCCCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHH
Q 031899           68 ----AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA  141 (151)
Q Consensus        68 ----~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~  141 (151)
                          .||||||+|+|+..+..++.+.+.+.++..+..  ++++++||+||++|.+|+.++..|+.+||+|+++|+|||.+
T Consensus       189 ~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~e  268 (281)
T PRK11493        189 PGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSE  268 (281)
T ss_pred             CCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHH
Confidence                699999999999877666667777888777654  57889999999999999999999999999999999999999


Q ss_pred             HHh-CCCCCCC
Q 031899          142 WRQ-NGLPTEP  151 (151)
Q Consensus       142 W~~-~g~pv~~  151 (151)
                      |.. +++|+++
T Consensus       269 W~~~~~~P~~~  279 (281)
T PRK11493        269 WGARADLPVEP  279 (281)
T ss_pred             HccCCCCCcCC
Confidence            998 7999974

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.94  E-value=3.5e-26  Score=173.27  Aligned_cols=147  Identities=12%  Similarity=0.177  Sum_probs=115.8

Q ss_pred             ccccccCccccccccccccccCccccCccc------------------------------cc-CCccccCHHHHHHHHhC
Q 031899            5 GDQQRCDNIGFISSKILSFCPKASLRGNLE------------------------------AV-GVPTSVPVRVAHELLQA   53 (151)
Q Consensus         5 ~~~~~~~~v~~l~gg~~~w~~~~~~~~~~~------------------------------~~-~~~~~i~~~~~~~~~~~   53 (151)
                      ....++++|++|+||+.+|...........                              .. .....++.+++.+.+..
T Consensus       124 L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  203 (320)
T PLN02723        124 FRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAASEAIEKVYQGQTVSPITFQTKFQPHLVWTLEQVKKNIED  203 (320)
T ss_pred             HHHcCCCceEEcCCCHHHHHHcCCCcccCCCccccccccccccccccccccCCCCCCcccccCCccceecHHHHHHhhcC
Confidence            345789999999999999987543211100                              00 01123577888777654


Q ss_pred             -CCEEEecCChhhH-----------hcCCCCCceeeccccccC-CCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHH
Q 031899           54 -GHRYLDVRTPEEF-----------SAGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM  118 (151)
Q Consensus        54 -~~~iiDvR~~~e~-----------~~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~  118 (151)
                       +.+|||+|++.+|           ..||||||+|+|+..+.. ++.+++.+.++..+..  ++++++||+||++|.+|+
T Consensus       204 ~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~  283 (320)
T PLN02723        204 KTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSPIVASCGTGVTAC  283 (320)
T ss_pred             CCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHH
Confidence             4789999999988           469999999999976553 4678888888887764  678999999999999999


Q ss_pred             HHHHHHHHCCCCceeEccccHHHHHhC-CCCCCC
Q 031899          119 MAATDLLNAGFAGITDIAGGFAAWRQN-GLPTEP  151 (151)
Q Consensus       119 ~~~~~L~~~G~~~v~~l~GG~~~W~~~-g~pv~~  151 (151)
                      .++..|+.+||++|++|+|||.+|... .+|+++
T Consensus       284 ~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~  317 (320)
T PLN02723        284 ILALGLHRLGKTDVPVYDGSWTEWGALPDTPVAT  317 (320)
T ss_pred             HHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccC
Confidence            999999999999999999999999885 688863

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.94  E-value=2.5e-26  Score=147.01  Aligned_cols=98  Identities=24%  Similarity=0.333  Sum_probs=79.1

Q ss_pred             ccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHH
Q 031899           41 SVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  119 (151)
Q Consensus        41 ~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~  119 (151)
                      .++++++.+++++ +++|||||++.||..||||||+|+|+..+..     ..+.+... ..++++++||+||++|.||..
T Consensus         3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~-----~~~~~~~~-~~~~~~~~ivvyC~~G~rs~~   76 (101)
T cd01518           3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFRE-----FPFWLDEN-LDLLKGKKVLMYCTGGIRCEK   76 (101)
T ss_pred             cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhH-----hHHHHHhh-hhhcCCCEEEEECCCchhHHH
Confidence            5788999888765 4789999999999999999999999853210     00111111 123788999999999999999


Q ss_pred             HHHHHHHCCCCceeEccccHHHHHh
Q 031899          120 AATDLLNAGFAGITDIAGGFAAWRQ  144 (151)
Q Consensus       120 ~~~~L~~~G~~~v~~l~GG~~~W~~  144 (151)
                      ++..|+..||++|++|+||+.+|.+
T Consensus        77 a~~~L~~~G~~~v~~l~GG~~~W~~  101 (101)
T cd01518          77 ASAYLKERGFKNVYQLKGGILKYLE  101 (101)
T ss_pred             HHHHHHHhCCcceeeechhHHHHhC
Confidence            9999999999999999999999963

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.2e-25  Score=166.04  Aligned_cols=144  Identities=23%  Similarity=0.375  Sum_probs=115.3

Q ss_pred             cccCccccccccccccccCccccCc--cc--cc------CCccccCHHHHHHHHhCC-CEEEecCChhhHhc--------
Q 031899            8 QRCDNIGFISSKILSFCPKASLRGN--LE--AV------GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSA--------   68 (151)
Q Consensus         8 ~~~~~v~~l~gg~~~w~~~~~~~~~--~~--~~------~~~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~--------   68 (151)
                      .+.++|++|+||+++|.++.-....  ..  ..      ......+..+.....+.. .+|||+|++.+|..        
T Consensus       114 ~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~  193 (285)
T COG2897         114 LGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDG  193 (285)
T ss_pred             cCCCceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCC
Confidence            6789999999999999986542221  11  00      112345666666666554 77899999999998        


Q ss_pred             --CCCCCceeeccccccC-CCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHH
Q 031899           69 --GHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR  143 (151)
Q Consensus        69 --ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~  143 (151)
                        ||||||+|+|+..+.. ...++.++.++.+...  ++++++||+||++|.+|+..+..|+.+|+.+.++|+|+|.+|.
T Consensus       194 ~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg  273 (285)
T COG2897         194 KAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWG  273 (285)
T ss_pred             CCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhh
Confidence              9999999999988776 4567777778877744  7899999999999999999999999999988899999999999


Q ss_pred             hC-CCCCCC
Q 031899          144 QN-GLPTEP  151 (151)
Q Consensus       144 ~~-g~pv~~  151 (151)
                      +. +.||++
T Consensus       274 ~~~~~PV~~  282 (285)
T COG2897         274 SDPDRPVET  282 (285)
T ss_pred             cCCCCcccc
Confidence            85 668864

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.93  E-value=4.5e-25  Score=138.42  Aligned_cols=89  Identities=35%  Similarity=0.606  Sum_probs=79.7

Q ss_pred             cCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHH
Q 031899           42 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAA  121 (151)
Q Consensus        42 i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~  121 (151)
                      ++++++.++++++.++||+|++.+|..||||||+|+|.            ..+......+++++++|+||++|.++..++
T Consensus         1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~------------~~~~~~~~~~~~~~~vvl~c~~g~~a~~~a   68 (90)
T cd01524           1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPL------------DELRDRLNELPKDKEIIVYCAVGLRGYIAA   68 (90)
T ss_pred             CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCH------------HHHHHHHHhcCCCCcEEEEcCCChhHHHHH
Confidence            46888988887778999999999999999999999998            345555556788899999999999999999


Q ss_pred             HHHHHCCCCceeEccccHHHHH
Q 031899          122 TDLLNAGFAGITDIAGGFAAWR  143 (151)
Q Consensus       122 ~~L~~~G~~~v~~l~GG~~~W~  143 (151)
                      ..|+..|| ++++|+||+.+|+
T Consensus        69 ~~L~~~G~-~v~~l~GG~~~w~   89 (90)
T cd01524          69 RILTQNGF-KVKNLDGGYKTYS   89 (90)
T ss_pred             HHHHHCCC-CEEEecCCHHHhc
Confidence            99999999 9999999999996

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.93  E-value=6.4e-25  Score=142.60  Aligned_cols=99  Identities=26%  Similarity=0.490  Sum_probs=84.9

Q ss_pred             CccccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHH-HHHhccCCCCeEEEEeCC
Q 031899           38 VPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHDEIIVGCQS  113 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~~---~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iv~~c~~  113 (151)
                      ....++++++.++++.+   ++|||+|++.+|..||||||+|+|..            .+. .....++++++||+||++
T Consensus         6 ~~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~~i~~~~~vvvyc~~   73 (110)
T cd01521           6 LAFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHR------------EICENATAKLDKEKLFVVYCDG   73 (110)
T ss_pred             eeeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHH------------HhhhHhhhcCCCCCeEEEEECC
Confidence            34578999999888653   78999999999999999999999984            232 344567889999999998


Q ss_pred             C--hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCC
Q 031899          114 G--KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       114 g--~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv  149 (151)
                      |  .++..+++.|++.|| ++++|+||+.+|..+|+|+
T Consensus        74 g~~~~s~~~a~~l~~~G~-~v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          74 PGCNGATKAALKLAELGF-PVKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             CCCchHHHHHHHHHHcCC-eEEEecCCHHHHHHCCCCC
Confidence            7  489999999999999 4999999999999999985

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.92  E-value=4.1e-25  Score=141.12  Aligned_cols=97  Identities=26%  Similarity=0.377  Sum_probs=78.9

Q ss_pred             cCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHH
Q 031899           42 VPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  119 (151)
Q Consensus        42 i~~~~~~~~~~~~--~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~  119 (151)
                      ++++++.++++++  ++|||||++.||..||||||+|+|+..+....    ..........++++++||+||.+|.+|..
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~----~~~~~~~~~~~~~~~~ivv~C~~G~rs~~   76 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDF----LEIEEDILDQLPDDQEVTVICAKEGSSQF   76 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHH----HHhhHHHHhhCCCCCeEEEEcCCCCcHHH
Confidence            5788888887653  78999999999999999999999985321100    00013345567889999999999999999


Q ss_pred             HHHHHHHCCCCceeEccccHHHHH
Q 031899          120 AATDLLNAGFAGITDIAGGFAAWR  143 (151)
Q Consensus       120 ~~~~L~~~G~~~v~~l~GG~~~W~  143 (151)
                      ++..|++.||+ ++.|.||+.+|.
T Consensus        77 aa~~L~~~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          77 VAELLAERGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             HHHHHHHcCce-eEEeCCcHHhhc
Confidence            99999999998 999999999996

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.92  E-value=8e-25  Score=145.77  Aligned_cols=102  Identities=28%  Similarity=0.485  Sum_probs=79.7

Q ss_pred             cCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCC----CCC------------------CHHHHHHHH-
Q 031899           42 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----MTK------------------NLKFVEEVS-   98 (151)
Q Consensus        42 i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~----~~~------------------~~~~~~~~~-   98 (151)
                      |+++++.++++++.+|||||++.||..||||||+|+|+.......    .++                  .+.++.... 
T Consensus         1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd01520           1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE   80 (128)
T ss_pred             CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            578899988887789999999999999999999999995322100    000                  011122221 


Q ss_pred             hccCCCCeEEEEeC-CChhHHHHHHHHHHCCCCceeEccccHHHHHh
Q 031899           99 TRFRKHDEIIVGCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ  144 (151)
Q Consensus        99 ~~~~~~~~iv~~c~-~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~  144 (151)
                      ..++++++||+||+ +|.||..+++.|+.+|| ++++|+||+.+|..
T Consensus        81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~  126 (128)
T cd01520          81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK  126 (128)
T ss_pred             hccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence            25788999999997 68999999999999999 69999999999975

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.92  E-value=8.4e-25  Score=177.07  Aligned_cols=146  Identities=19%  Similarity=0.294  Sum_probs=115.9

Q ss_pred             cccccCccccccccccccccCccc--cCcccc--------cCCccccCHHHHHHHHhC-CCEEEecCChhhHh-------
Q 031899            6 DQQRCDNIGFISSKILSFCPKASL--RGNLEA--------VGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFS-------   67 (151)
Q Consensus         6 ~~~~~~~v~~l~gg~~~w~~~~~~--~~~~~~--------~~~~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~-------   67 (151)
                      ...++++|++|+||+.+|..+...  .+....        ......++.+++.+.+++ +++|||+|++.||.       
T Consensus       103 ~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~  182 (610)
T PRK09629        103 DVIGHSGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAA  182 (610)
T ss_pred             HHcCCCCEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccccc
Confidence            447899999999999999885432  111110        011235688888877754 47899999999994       


Q ss_pred             -cCCCCCceeecccccc-CCCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHH
Q 031899           68 -AGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR  143 (151)
Q Consensus        68 -~ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~  143 (151)
                       .||||||+|+|+..+. ..+.+++++.+++++..  ++++++||+||++|.+|+.+++.|+.+||++|++|+|||.+|.
T Consensus       183 r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~  262 (610)
T PRK09629        183 KGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWG  262 (610)
T ss_pred             cCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHh
Confidence             7999999999986544 34567778888887765  5789999999999999999999999999999999999999998


Q ss_pred             hC-CCCCCC
Q 031899          144 QN-GLPTEP  151 (151)
Q Consensus       144 ~~-g~pv~~  151 (151)
                      .. ++|+++
T Consensus       263 ~~~~lPv~~  271 (610)
T PRK09629        263 NHPDTPVEV  271 (610)
T ss_pred             CCCCCcccc
Confidence            85 788863

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.92  E-value=7e-25  Score=141.25  Aligned_cols=101  Identities=26%  Similarity=0.403  Sum_probs=81.1

Q ss_pred             CHHHHHHHHh-C-CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHH
Q 031899           43 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM  118 (151)
Q Consensus        43 ~~~~~~~~~~-~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~  118 (151)
                      +++++.++++ . +.+|||+|++.+|..||||||+|+|+..+... ....++.+...+..  ++++++||+||++|.+|.
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~   80 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDA-LALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSK   80 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhh-hCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHH
Confidence            5677777776 4 48999999999999999999999999654322 22233334444443  356889999999999999


Q ss_pred             HHHHHHHHCCCCceeEccccHHHHHh
Q 031899          119 MAATDLLNAGFAGITDIAGGFAAWRQ  144 (151)
Q Consensus       119 ~~~~~L~~~G~~~v~~l~GG~~~W~~  144 (151)
                      .+++.|+..||+||++|+||+.+|.+
T Consensus        81 ~~~~~l~~~G~~~v~~~~Gg~~~W~~  106 (106)
T cd01519          81 AAAELARSLGYENVGNYPGSWLDWAA  106 (106)
T ss_pred             HHHHHHHHcCCccceecCCcHHHHcC
Confidence            99999999999999999999999963

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.92  E-value=1.3e-24  Score=143.67  Aligned_cols=108  Identities=30%  Similarity=0.406  Sum_probs=85.3

Q ss_pred             CCccccCHHHHHHHHhC--CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHH---HHhccCCCCeEEEEe
Q 031899           37 GVPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE---VSTRFRKHDEIIVGC  111 (151)
Q Consensus        37 ~~~~~i~~~~~~~~~~~--~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iv~~c  111 (151)
                      .....++++++.+++++  +++|||+|++.||..||||||+|+|+..+....     ..+..   ....++++++||+||
T Consensus         5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~-----~~~~~~~~~~~~~~~~~~ivv~C   79 (122)
T cd01526           5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKA-----AELKSLQELPLDNDKDSPIYVVC   79 (122)
T ss_pred             CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhh-----hhhhhhhhcccccCCCCcEEEEC
Confidence            44567899999988865  478999999999999999999999985332100     00000   012247789999999


Q ss_pred             CCChhHHHHHHHHHHCCC-CceeEccccHHHHHhCCCCC
Q 031899          112 QSGKRSMMAATDLLNAGF-AGITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       112 ~~g~~a~~~~~~L~~~G~-~~v~~l~GG~~~W~~~g~pv  149 (151)
                      ++|.+|..++..|+..|| ++++.|+||+.+|.....+.
T Consensus        80 ~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~  118 (122)
T cd01526          80 RRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT  118 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence            999999999999999999 79999999999999875543

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.92  E-value=1.4e-24  Score=137.45  Aligned_cols=90  Identities=27%  Similarity=0.350  Sum_probs=74.3

Q ss_pred             cCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc-c-CCCCeEEEEeCCChh
Q 031899           42 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-F-RKHDEIIVGCQSGKR  116 (151)
Q Consensus        42 i~~~~~~~~~~~~---~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~iv~~c~~g~~  116 (151)
                      |+++++.+++.++   ++|||||++.||..||||||+|+|+.            .+...... . .++++||+||.+|.|
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~------------~l~~~~~~~~~~~~~~iv~~c~~G~r   68 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGG------------QLVQETDHFAPVRGARIVLADDDGVR   68 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHH------------HHHHHHHHhcccCCCeEEEECCCCCh
Confidence            5778888887653   67999999999999999999999984            22221122 2 247899999999999


Q ss_pred             HHHHHHHHHHCCCCceeEccccHHHHHh
Q 031899          117 SMMAATDLLNAGFAGITDIAGGFAAWRQ  144 (151)
Q Consensus       117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~  144 (151)
                      +..++..|+..||+ +++|+||+.+|..
T Consensus        69 s~~aa~~L~~~G~~-v~~l~GG~~~W~~   95 (95)
T cd01534          69 ADMTASWLAQMGWE-VYVLEGGLAAALA   95 (95)
T ss_pred             HHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence            99999999999998 9999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.92  E-value=2.5e-24  Score=137.70  Aligned_cols=91  Identities=32%  Similarity=0.545  Sum_probs=77.9

Q ss_pred             cCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc---CCCCeEEEEeCCCh
Q 031899           42 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---RKHDEIIVGCQSGK  115 (151)
Q Consensus        42 i~~~~~~~~~~~~---~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iv~~c~~g~  115 (151)
                      ++++++.++++.+   .+|||+|++.||..+|||||+|+|+.            .+......+   ++++++|+||++|.
T Consensus         2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~------------~~~~~~~~~~~~~~~~~vv~~c~~g~   69 (101)
T cd01528           2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMS------------EIPERSKELDSDNPDKDIVVLCHHGG   69 (101)
T ss_pred             CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHH------------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence            6788888887754   78999999999999999999999984            233333333   35899999999999


Q ss_pred             hHHHHHHHHHHCCCCceeEccccHHHHHh
Q 031899          116 RSMMAATDLLNAGFAGITDIAGGFAAWRQ  144 (151)
Q Consensus       116 ~a~~~~~~L~~~G~~~v~~l~GG~~~W~~  144 (151)
                      +|..++..|.+.||+++++|+||+.+|..
T Consensus        70 rs~~~~~~l~~~G~~~v~~l~GG~~~w~~   98 (101)
T cd01528          70 RSMQVAQWLLRQGFENVYNLQGGIDAWSL   98 (101)
T ss_pred             hHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence            99999999999999999999999999975

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.92  E-value=2.7e-24  Score=136.14  Aligned_cols=91  Identities=34%  Similarity=0.596  Sum_probs=81.1

Q ss_pred             cCHHHHHHHHhC--CCEEEecCChhhHhc--CCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhH
Q 031899           42 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  117 (151)
Q Consensus        42 i~~~~~~~~~~~--~~~iiDvR~~~e~~~--ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a  117 (151)
                      ++++++.++++.  +++|||+|++.+|..  ||||||+|+|+            ..+......++++++||+||.+|.+|
T Consensus         2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~------------~~~~~~~~~~~~~~~ivv~c~~g~~s   69 (96)
T cd01444           2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDE------------DSLDDWLGDLDRDRPVVVYCYHGNSS   69 (96)
T ss_pred             cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCH------------HHHHHHHhhcCCCCCEEEEeCCCChH
Confidence            678888888765  389999999999999  99999999999            34555556688899999999999999


Q ss_pred             HHHHHHHHHCCCCceeEccccHHHHHh
Q 031899          118 MMAATDLLNAGFAGITDIAGGFAAWRQ  144 (151)
Q Consensus       118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~  144 (151)
                      ..++..|+..||+++++|+||+.+|..
T Consensus        70 ~~a~~~l~~~G~~~v~~l~gG~~~w~~   96 (96)
T cd01444          70 AQLAQALREAGFTDVRSLAGGFEAWRR   96 (96)
T ss_pred             HHHHHHHHHcCCceEEEcCCCHHHhcC
Confidence            999999999999999999999999963

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.92  E-value=2.5e-24  Score=146.09  Aligned_cols=91  Identities=25%  Similarity=0.381  Sum_probs=80.9

Q ss_pred             HHHHhCC--CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHH
Q 031899           48 HELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL  125 (151)
Q Consensus        48 ~~~~~~~--~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~  125 (151)
                      .+++.++  ++|||||++.+|..||||||+|+|.            ..+......++++++||+||.+|.+|..+++.|+
T Consensus         3 ~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~------------~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~   70 (145)
T cd01535           3 AAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLR------------AQLAQALEKLPAAERYVLTCGSSLLARFAAADLA   70 (145)
T ss_pred             HHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCH------------HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHH
Confidence            4444433  7999999999999999999999998            5666666677888999999999999999999999


Q ss_pred             HCCCCceeEccccHHHHHhCCCCCC
Q 031899          126 NAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       126 ~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      ..||++|++|+||+.+|..+|+|++
T Consensus        71 ~~G~~~v~~L~GG~~aW~~~g~pl~   95 (145)
T cd01535          71 ALTVKPVFVLEGGTAAWIAAGLPVE   95 (145)
T ss_pred             HcCCcCeEEecCcHHHHHHCCCCcc
Confidence            9999999999999999999999986

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.92  E-value=4.5e-24  Score=140.87  Aligned_cols=105  Identities=24%  Similarity=0.285  Sum_probs=89.3

Q ss_pred             cCHHHHHHHHhC-CCEEEecCCh-------hhHhcCCCCCceeeccccccC-----CCCCCCHHHHHHHHhc--cCCCCe
Q 031899           42 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDE  106 (151)
Q Consensus        42 i~~~~~~~~~~~-~~~iiDvR~~-------~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~  106 (151)
                      ++++++.+++.+ +.+|||+|++       .+|..||||||+|+|+..+..     .+.+.+.+.+.+....  ++++++
T Consensus         2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (122)
T cd01448           2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT   81 (122)
T ss_pred             cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence            688899888876 5889999999       999999999999999876543     3456666666666654  578999


Q ss_pred             EEEEeCC-ChhHHHHHHHHHHCCCCceeEccccHHHHHhCC
Q 031899          107 IIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG  146 (151)
Q Consensus       107 iv~~c~~-g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g  146 (151)
                      ||+||++ +.++..+++.|+..||++|++|+||+.+|..+|
T Consensus        82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence            9999999 589999999999999999999999999998875

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.91  E-value=2.8e-24  Score=137.64  Aligned_cols=101  Identities=28%  Similarity=0.436  Sum_probs=78.1

Q ss_pred             cCHHHHHHHHhC-CCEEEecCChhhH-hcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHH
Q 031899           42 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  119 (151)
Q Consensus        42 i~~~~~~~~~~~-~~~iiDvR~~~e~-~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~  119 (151)
                      ++++++.+++++ +.+|||+|++.+| ..||||||+|+|+..+...  ......  .....++++++||+||++|.++..
T Consensus         1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~--~~~~~~--~~~~~~~~~~~ivv~c~~g~~s~~   76 (103)
T cd01447           1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFW--ADPDSP--YHKPAFAEDKPFVFYCASGWRSAL   76 (103)
T ss_pred             CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhh--cCcccc--ccccCCCCCCeEEEEcCCCCcHHH
Confidence            477888888764 5889999999998 5799999999998422100  000000  001136789999999999999999


Q ss_pred             HHHHHHHCCCCceeEccccHHHHHhCC
Q 031899          120 AATDLLNAGFAGITDIAGGFAAWRQNG  146 (151)
Q Consensus       120 ~~~~L~~~G~~~v~~l~GG~~~W~~~g  146 (151)
                      +++.|+..||+++++|+||+.+|..+|
T Consensus        77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g  103 (103)
T cd01447          77 AGKTLQDMGLKPVYNIEGGFKDWKEAG  103 (103)
T ss_pred             HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence            999999999999999999999998765

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.91  E-value=6.7e-24  Score=146.39  Aligned_cols=111  Identities=20%  Similarity=0.251  Sum_probs=83.9

Q ss_pred             CccccCHHHHHHHHhCC-CEEEecCChh----hHhcC---------CCCCceeeccccccCCCCCCCHHHHHHHHhc---
Q 031899           38 VPTSVPVRVAHELLQAG-HRYLDVRTPE----EFSAG---------HATGAINVPYMYRVGSGMTKNLKFVEEVSTR---  100 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~~-~~iiDvR~~~----e~~~g---------hIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~---  100 (151)
                      ....++++++.++++++ .+|||||++.    +|..|         |||||+|+|+..... ........+...+..   
T Consensus        34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~-l~~~~~~~~~~~l~~~~~  112 (162)
T TIGR03865        34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGN-LAPAWQAYFRRGLERATG  112 (162)
T ss_pred             CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCC-CCCchhHHHHHHHHHhcC
Confidence            34689999999988764 8899999865    45544         999999999631110 000111223333322   


Q ss_pred             cCCCCeEEEEeCCCh-hHHHHHHHHHHCCCCceeEccccHHHHHhCCCCC
Q 031899          101 FRKHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       101 ~~~~~~iv~~c~~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv  149 (151)
                      .+++++||+||++|. +|..+++.|+.+||++|++|+||+.+|..+|+|+
T Consensus       113 ~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv  162 (162)
T TIGR03865       113 GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL  162 (162)
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence            268899999999985 8999999999999999999999999999999996

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.91  E-value=6.3e-24  Score=139.30  Aligned_cols=103  Identities=24%  Similarity=0.452  Sum_probs=86.6

Q ss_pred             cCHHHHHHHHhCC-CEEEecCChhhHhc-----------CCCCCceeeccccccC-CCCCCCHHHHHHHHhc--cCCCCe
Q 031899           42 VPVRVAHELLQAG-HRYLDVRTPEEFSA-----------GHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDE  106 (151)
Q Consensus        42 i~~~~~~~~~~~~-~~iiDvR~~~e~~~-----------ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~  106 (151)
                      ++++++.++++++ ++|||+|++.||..           ||||||+|+|+..+.. .+.+++.+.+...+..  ++++++
T Consensus         1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (118)
T cd01449           1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP   80 (118)
T ss_pred             CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence            4678888887654 89999999999987           9999999999976543 2345566677776665  457899


Q ss_pred             EEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHHh
Q 031899          107 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ  144 (151)
Q Consensus       107 iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~  144 (151)
                      ||+||++|.+|.++++.|+.+||+++++|+||+.+|..
T Consensus        81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~  118 (118)
T cd01449          81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS  118 (118)
T ss_pred             EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence            99999999999999999999999999999999999963

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.91  E-value=5.2e-24  Score=136.99  Aligned_cols=100  Identities=25%  Similarity=0.389  Sum_probs=77.1

Q ss_pred             cCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCceeeccccccCC-CCCCCHHHHHHHHhccCCCCeEEEEeCCChhH
Q 031899           42 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  117 (151)
Q Consensus        42 i~~~~~~~~~~~---~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a  117 (151)
                      |+++++.+++++   +++|||+|++.||..||||||+|+|+..+... .....-.....+..  ..+++||+||.+|.+|
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~~s   78 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHKHA   78 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCccH
Confidence            578899988875   47899999999999999999999998644321 11100000111111  2478999999999999


Q ss_pred             HHHHHHHHHCCCCceeEccccHHHHH
Q 031899          118 MMAATDLLNAGFAGITDIAGGFAAWR  143 (151)
Q Consensus       118 ~~~~~~L~~~G~~~v~~l~GG~~~W~  143 (151)
                      ..+++.|+..||++|++|+||+.+|+
T Consensus        79 ~~~a~~L~~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          79 ALFAAFLVKCGVPRVCILDGGINALK  104 (105)
T ss_pred             HHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence            99999999999999999999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.91  E-value=6.5e-24  Score=139.30  Aligned_cols=102  Identities=28%  Similarity=0.428  Sum_probs=83.9

Q ss_pred             cCHHHHHHHHhC--CCEEEecCChhhHh-cCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHH
Q 031899           42 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  118 (151)
Q Consensus        42 i~~~~~~~~~~~--~~~iiDvR~~~e~~-~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~  118 (151)
                      ++++++.+++++  +.+|||||++.||. .||||||+|+|+..+...  .....+...+...++++++||+||++|.+|.
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~   78 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI   78 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence            578888888876  48899999999999 999999999998654321  1123344444444578899999999999999


Q ss_pred             HHHHHHHHCCCCceeEccccHHHHHhC
Q 031899          119 MAATDLLNAGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       119 ~~~~~L~~~G~~~v~~l~GG~~~W~~~  145 (151)
                      .++..|+..||++++.+.||+.+|+..
T Consensus        79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          79 AAAEAAAQAGFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             HHHHHHHHCCCCeEEECcCceecCCCC
Confidence            999999999999999999999999764

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=1.4e-23  Score=138.38  Aligned_cols=92  Identities=28%  Similarity=0.402  Sum_probs=77.5

Q ss_pred             ccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHh------ccCCCCeE
Q 031899           41 SVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST------RFRKHDEI  107 (151)
Q Consensus        41 ~i~~~~~~~~~~~-------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i  107 (151)
                      .|+++++.+++.+       +++|||||++.||..||||||+|+|..           +.+.....      .++++++|
T Consensus         3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~~l~~~~~~~~~~~~~~~~~~v   71 (121)
T cd01530           3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTK-----------DELEEFFLDKPGVASKKKRRVL   71 (121)
T ss_pred             ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcH-----------HHHHHHHHHhhcccccCCCCEE
Confidence            5789999888764       478999999999999999999999983           12333222      25789999


Q ss_pred             EEEeC-CChhHHHHHHHHHHC------------CCCceeEccccHHHHH
Q 031899          108 IVGCQ-SGKRSMMAATDLLNA------------GFAGITDIAGGFAAWR  143 (151)
Q Consensus       108 v~~c~-~g~~a~~~~~~L~~~------------G~~~v~~l~GG~~~W~  143 (151)
                      |+||. +|.||..+++.|+..            ||.+|++|+||+.+|.
T Consensus        72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence            99997 999999999999985            9999999999999984

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.90  E-value=2.8e-23  Score=131.35  Aligned_cols=96  Identities=33%  Similarity=0.551  Sum_probs=76.3

Q ss_pred             CCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHH--hccCCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899           53 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS--TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA  130 (151)
Q Consensus        53 ~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~  130 (151)
                      ++++|||+|++.||..+|||||+|+|...+...........+....  ...+++++||+||.+|.++..+++.|+..||+
T Consensus         3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~   82 (100)
T smart00450        3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK   82 (100)
T ss_pred             CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence            4578999999999999999999999996544322111111222222  23567899999999999999999999999999


Q ss_pred             ceeEccccHHHHHhCCCC
Q 031899          131 GITDIAGGFAAWRQNGLP  148 (151)
Q Consensus       131 ~v~~l~GG~~~W~~~g~p  148 (151)
                      ++++|+||+.+|..++.|
T Consensus        83 ~v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       83 NVYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             ceEEecCCHHHHHhcCCC
Confidence            999999999999998865

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.90  E-value=4.7e-23  Score=133.55  Aligned_cols=103  Identities=31%  Similarity=0.540  Sum_probs=79.2

Q ss_pred             CHHHHHHHH-hCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHH----HHHHHhccCCCCeEEEEeCCChhH
Q 031899           43 PVRVAHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF----VEEVSTRFRKHDEIIVGCQSGKRS  117 (151)
Q Consensus        43 ~~~~~~~~~-~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~----~~~~~~~~~~~~~iv~~c~~g~~a  117 (151)
                      |++++.+++ +++++|||+|++.+|..||||||+|+|+............+.    .......++++++||+||.+|.++
T Consensus         1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~   80 (113)
T PF00581_consen    1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS   80 (113)
T ss_dssp             -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred             CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence            578898888 345999999999999999999999999965522222222222    233333467888999999888777


Q ss_pred             HHHHHH-----HHHCCCCceeEccccHHHHHhC
Q 031899          118 MMAATD-----LLNAGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       118 ~~~~~~-----L~~~G~~~v~~l~GG~~~W~~~  145 (151)
                      ..++..     |...||++|++|+||+.+|.++
T Consensus        81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~  113 (113)
T PF00581_consen   81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKAE  113 (113)
T ss_dssp             HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred             chhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence            766665     8899999999999999999863

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=3.4e-23  Score=131.27  Aligned_cols=87  Identities=25%  Similarity=0.414  Sum_probs=71.3

Q ss_pred             hCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCc
Q 031899           52 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG  131 (151)
Q Consensus        52 ~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~  131 (151)
                      +++++|||+|++.+|..||||||+|+|+..+.     .....++. ....+++++||+||++|.++..++..|+..||++
T Consensus        10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~-----~~~~~~~~-~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~   83 (96)
T cd01529          10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALV-----LRSQELQA-LEAPGRATRYVLTCDGSLLARFAAQELLALGGKP   83 (96)
T ss_pred             CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhc-----CCHHHHHH-hhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCC
Confidence            34589999999999999999999999985321     12233332 3345778999999999999999999999999999


Q ss_pred             eeEccccHHHHHh
Q 031899          132 ITDIAGGFAAWRQ  144 (151)
Q Consensus       132 v~~l~GG~~~W~~  144 (151)
                      |++|+||+.+|.+
T Consensus        84 v~~l~GG~~~W~~   96 (96)
T cd01529          84 VALLDGGTSAWVA   96 (96)
T ss_pred             EEEeCCCHHHhcC
Confidence            9999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.89  E-value=6.3e-23  Score=158.66  Aligned_cols=99  Identities=34%  Similarity=0.591  Sum_probs=88.2

Q ss_pred             cccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhH
Q 031899           40 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRS  117 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a  117 (151)
                      ..++++++.++++++.+|||+|++.||..||||||+|+|+.            .+......  .+++++||+||++|.+|
T Consensus         3 ~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~IvvyC~~G~rs   70 (376)
T PRK08762          3 REISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRG------------FLELRIETHLPDRDREIVLICASGTRS   70 (376)
T ss_pred             ceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHH------------HHHHHHhhhcCCCCCeEEEEcCCCcHH
Confidence            46899999999888899999999999999999999999983            44443333  26789999999999999


Q ss_pred             HHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899          118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      ..+++.|+..||++|++|+||+.+|..+|+|++
T Consensus        71 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  103 (376)
T PRK08762         71 AHAAATLRELGYTRVASVAGGFSAWKDAGLPLE  103 (376)
T ss_pred             HHHHHHHHHcCCCceEeecCcHHHHHhcCCccc
Confidence            999999999999999999999999999999986

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.89  E-value=1.6e-22  Score=136.19  Aligned_cols=102  Identities=20%  Similarity=0.257  Sum_probs=84.1

Q ss_pred             cCHHHHHHHHh-----CCCEEEecCCh--------hhHhc------------CCCCCceeeccccccC-C----CCCCCH
Q 031899           42 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMYRVG-S----GMTKNL   91 (151)
Q Consensus        42 i~~~~~~~~~~-----~~~~iiDvR~~--------~e~~~------------ghIpgAi~ip~~~~~~-~----~~~~~~   91 (151)
                      ++++++.+.++     ++++|||+|+.        .+|..            ||||||+|+|+..+.. +    ..+++.
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~   80 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE   80 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence            46788888876     35899999987        88998            9999999999865432 1    234455


Q ss_pred             HHHHHHHhc--cCCCCeEEEEeCC---ChhHHHHHHHHHHCCCCceeEccccHHHHH
Q 031899           92 KFVEEVSTR--FRKHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDIAGGFAAWR  143 (151)
Q Consensus        92 ~~~~~~~~~--~~~~~~iv~~c~~---g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~  143 (151)
                      +.+...+..  ++++++||+||++   +..+.++++.|+.+|+++|++|+||+.+|.
T Consensus        81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~  137 (138)
T cd01445          81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF  137 (138)
T ss_pred             HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence            677777765  5788999999986   688999999999999999999999999996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.89  E-value=2e-22  Score=150.47  Aligned_cols=112  Identities=20%  Similarity=0.219  Sum_probs=93.1

Q ss_pred             cccCHHHHHHHHhCC-CEEEecCC----------hhhHhcCCCCCceeeccccccCC-----CCCCCHHHHHHHHhc--c
Q 031899           40 TSVPVRVAHELLQAG-HRYLDVRT----------PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--F  101 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~-~~iiDvR~----------~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~--~  101 (151)
                      ..++++++.+.++++ ++|||+|+          +.+|..||||||+|+|+..+...     ..+.+++.+...+..  +
T Consensus         5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi   84 (281)
T PRK11493          5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV   84 (281)
T ss_pred             cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            468999998888654 89999996          78999999999999998654321     344566777777776  4


Q ss_pred             CCCCeEEEEeCCCh-hHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          102 RKHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       102 ~~~~~iv~~c~~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      +++++||+||.++. .+.++++.|+..||++|++|+||+.+|.++|+|+++
T Consensus        85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~  135 (281)
T PRK11493         85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEE  135 (281)
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccC
Confidence            78999999999875 477889999999999999999999999999999863

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.88  E-value=1.6e-22  Score=127.32  Aligned_cols=80  Identities=26%  Similarity=0.459  Sum_probs=66.9

Q ss_pred             CCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHH-HHHhccC-CCCeEEEEeCCChh--HHHHHHHHHHCC
Q 031899           53 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFR-KHDEIIVGCQSGKR--SMMAATDLLNAG  128 (151)
Q Consensus        53 ~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~iv~~c~~g~~--a~~~~~~L~~~G  128 (151)
                      ++++|||+|++.||..+|||||+|+|..            .+. .....++ ++++||+||.+|.+  |..+++.|++.|
T Consensus         9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G   76 (92)
T cd01532           9 EEIALIDVREEDPFAQSHPLWAANLPLS------------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELG   76 (92)
T ss_pred             CCeEEEECCCHHHHhhCCcccCeeCCHH------------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence            4589999999999999999999999984            222 1222233 58899999999876  689999999999


Q ss_pred             CCceeEccccHHHHHh
Q 031899          129 FAGITDIAGGFAAWRQ  144 (151)
Q Consensus       129 ~~~v~~l~GG~~~W~~  144 (151)
                      |++|++|+||+.+|.+
T Consensus        77 ~~~v~~l~GG~~~W~~   92 (92)
T cd01532          77 YTDVALLEGGLQGWRA   92 (92)
T ss_pred             ccCEEEccCCHHHHcC
Confidence            9999999999999974

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.88  E-value=3.2e-22  Score=151.66  Aligned_cols=113  Identities=19%  Similarity=0.226  Sum_probs=93.1

Q ss_pred             ccccCHHHHHHHHhC-CCEEEecC--------C-hhhHhcCCCCCceeeccccccC-----CCCCCCHHHHHHHHhcc--
Q 031899           39 PTSVPVRVAHELLQA-GHRYLDVR--------T-PEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTRF--  101 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-~~~iiDvR--------~-~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~~--  101 (151)
                      ...++++++.+++++ +++|||+|        + ..+|..||||||+|+++..+..     ...++..+.+...+..+  
T Consensus        21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi  100 (320)
T PLN02723         21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGI  100 (320)
T ss_pred             CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCC
Confidence            358999999998865 48899996        3 3789999999999999865442     13455667777777764  


Q ss_pred             CCCCeEEEEeCCCh-hHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          102 RKHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       102 ~~~~~iv~~c~~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      .++++||+||+.|. .+.++++.|+.+||++|++|+||+.+|.++|+|+++
T Consensus       101 ~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~  151 (320)
T PLN02723        101 ENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVES  151 (320)
T ss_pred             CCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCccc
Confidence            57899999998874 567889999999999999999999999999999863

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.88  E-value=4.4e-22  Score=161.36  Aligned_cols=111  Identities=21%  Similarity=0.220  Sum_probs=95.2

Q ss_pred             cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCceeecccccc-----CCCCCCCHHHHHHHHhcc--CCCCeEEEEe
Q 031899           40 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTRF--RKHDEIIVGC  111 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~iv~~c  111 (151)
                      ..|+++++.++++++ ++|||+|++.+|..||||||+|+++....     ..+++++.+.++..+..+  +++++||+||
T Consensus         9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd   88 (610)
T PRK09629          9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD   88 (610)
T ss_pred             ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence            568999999998764 89999999999999999999999975432     134566667777777764  6799999999


Q ss_pred             CCC-hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899          112 QSG-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       112 ~~g-~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      +++ .++.++++.|+.+||++|++|+||+.+|..+|+|++
T Consensus        89 ~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~  128 (610)
T PRK09629         89 DEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLS  128 (610)
T ss_pred             CCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccc
Confidence            977 588899999999999999999999999999999986

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.87  E-value=1.1e-21  Score=126.74  Aligned_cols=87  Identities=40%  Similarity=0.690  Sum_probs=76.1

Q ss_pred             CCCEEEecCChhhHhcCCCCC-ceeeccccccCCCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHHCCC
Q 031899           53 AGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGF  129 (151)
Q Consensus        53 ~~~~iiDvR~~~e~~~ghIpg-Ai~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~~G~  129 (151)
                      .+.+|||||++.||..+|||| ++|+|..+            +......  +++++++|+||.+|.||..++..|+..||
T Consensus        19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~------------~~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G~   86 (110)
T COG0607          19 EDAVLLDVREPEEYERGHIPGAAINIPLSE------------LKAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAGF   86 (110)
T ss_pred             CCCEEEeccChhHhhhcCCCcceeeeeccc------------chhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcCC
Confidence            459999999999999999999 99999953            2222222  47899999999999999999999999999


Q ss_pred             CceeEccccHHHHHhCCCCCCC
Q 031899          130 AGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       130 ~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      ++++.+.||+.+|..+++|+++
T Consensus        87 ~~~~~l~gG~~~w~~~~~~~~~  108 (110)
T COG0607          87 TNVYNLDGGIDAWKGAGLPLVR  108 (110)
T ss_pred             ccccccCCcHHHHHhcCCCccc
Confidence            9888999999999999998763

>PRK01415 hypothetical protein; Validated

Probab=99.87  E-value=1.2e-21  Score=142.48  Aligned_cols=98  Identities=18%  Similarity=0.237  Sum_probs=82.7

Q ss_pred             ccccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHH---HhccCCCCeEEEEeCCC
Q 031899           39 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV---STRFRKHDEIIVGCQSG  114 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~---~~~~~~~~~iv~~c~~g  114 (151)
                      -..++++++.+++++ +++|||||++.||..||||||+|+|...+         ..+...   ...++++++|++||.+|
T Consensus       111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f---------~e~~~~~~~~~~~~k~k~Iv~yCtgG  181 (247)
T PRK01415        111 GEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTF---------KQFPAWVQQNQELLKGKKIAMVCTGG  181 (247)
T ss_pred             ccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHH---------hhhHHHHhhhhhhcCCCeEEEECCCC
Confidence            357999999998875 48999999999999999999999998421         111111   23357899999999999


Q ss_pred             hhHHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899          115 KRSMMAATDLLNAGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       115 ~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~  145 (151)
                      .||..++..|++.||++|+.|.||+.+|.+.
T Consensus       182 iRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~  212 (247)
T PRK01415        182 IRCEKSTSLLKSIGYDEVYHLKGGILQYLED  212 (247)
T ss_pred             hHHHHHHHHHHHcCCCcEEEechHHHHHHHh
Confidence            9999999999999999999999999999875

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.87  E-value=8.1e-22  Score=122.55  Aligned_cols=80  Identities=43%  Similarity=0.678  Sum_probs=69.9

Q ss_pred             hCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHH--HhccCCCCeEEEEeCCChhHHHHHHHHHHCCC
Q 031899           52 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV--STRFRKHDEIIVGCQSGKRSMMAATDLLNAGF  129 (151)
Q Consensus        52 ~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~  129 (151)
                      .++..|||+|++.+|..+|||||+|+|+.            .+...  ....+++++||+||+++.++..+++.|++.||
T Consensus         8 ~~~~~iiD~R~~~~~~~~~i~ga~~~~~~------------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~   75 (89)
T cd00158           8 DEDAVLLDVREPEEYAAGHIPGAINIPLS------------ELEERAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGG   75 (89)
T ss_pred             CCCeEEEECCCHHHHhccccCCCEecchH------------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHHHHHhCc
Confidence            45689999999999999999999999994            22222  34567899999999999999999999999999


Q ss_pred             CceeEccccHHHHH
Q 031899          130 AGITDIAGGFAAWR  143 (151)
Q Consensus       130 ~~v~~l~GG~~~W~  143 (151)
                      +++++|+||+.+|.
T Consensus        76 ~~v~~l~gG~~~w~   89 (89)
T cd00158          76 TNVYNLEGGMLAWK   89 (89)
T ss_pred             ccEEEecCChhhcC
Confidence            99999999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.87  E-value=1.9e-21  Score=124.22  Aligned_cols=80  Identities=31%  Similarity=0.554  Sum_probs=68.1

Q ss_pred             CCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEEeCCChhHHHHHHHHHHCCCC
Q 031899           53 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAGFA  130 (151)
Q Consensus        53 ~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~c~~g~~a~~~~~~L~~~G~~  130 (151)
                      ....+||+|++.||..||||||+|+|+.            .+......+  +++++||+||++|.+|..++..|++.||+
T Consensus        17 ~~~~lIDvR~~~ef~~ghIpgAinip~~------------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~   84 (101)
T TIGR02981        17 AAEHWIDVRIPEQYQQEHIQGAINIPLK------------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT   84 (101)
T ss_pred             cCCEEEECCCHHHHhcCCCCCCEECCHH------------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence            3467999999999999999999999993            344444432  46789999999999999999999999999


Q ss_pred             ceeEccccHHHHHhC
Q 031899          131 GITDIAGGFAAWRQN  145 (151)
Q Consensus       131 ~v~~l~GG~~~W~~~  145 (151)
                      +++++ ||+.+|..-
T Consensus        85 ~v~~~-GG~~~~~~~   98 (101)
T TIGR02981        85 HAENA-GGIKDIAMP   98 (101)
T ss_pred             eEEec-CCHHHhhhh
Confidence            99985 999999753

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=1.6e-21  Score=127.10  Aligned_cols=97  Identities=22%  Similarity=0.411  Sum_probs=75.1

Q ss_pred             cccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEEeC-C
Q 031899           40 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQ-S  113 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~---~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~c~-~  113 (151)
                      ..++++++.+++..+   .+|||||++ ||..||||||+|+|+..+.        ..+..+....  +++++||+||. +
T Consensus         2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~--------~~~~~~~~~~~~~~~~~iv~yC~~~   72 (113)
T cd01531           2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK--------AQLNQLVQLLSGSKKDTVVFHCALS   72 (113)
T ss_pred             CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh--------hCHHHHHHHHhcCCCCeEEEEeecC
Confidence            467899999887653   689999999 9999999999999995221        1122222222  56789999998 6


Q ss_pred             ChhHHHHHHHHHH--------CCCCceeEccccHHHHHhC
Q 031899          114 GKRSMMAATDLLN--------AGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       114 g~~a~~~~~~L~~--------~G~~~v~~l~GG~~~W~~~  145 (151)
                      +.|+..++..|.+        .||.+|++|+||+.+|.+.
T Consensus        73 ~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          73 QVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             CcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence            6788888877643        4999999999999999864

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.86  E-value=2.5e-21  Score=124.21  Aligned_cols=78  Identities=31%  Similarity=0.532  Sum_probs=67.0

Q ss_pred             CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEEeCCChhHHHHHHHHHHCCCCc
Q 031899           54 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAGFAG  131 (151)
Q Consensus        54 ~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~  131 (151)
                      +-+|||+|++.||..+|||||+|+|+.            .+......+  +++++||+||++|.+|..++..|.+.||++
T Consensus        20 ~~~lIDvR~~~ef~~ghIpGAiniP~~------------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~   87 (104)
T PRK10287         20 AEHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH   87 (104)
T ss_pred             CCEEEECCCHHHHhcCCCCccEECCHH------------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence            357999999999999999999999983            344444443  456889999999999999999999999999


Q ss_pred             eeEccccHHHHHh
Q 031899          132 ITDIAGGFAAWRQ  144 (151)
Q Consensus       132 v~~l~GG~~~W~~  144 (151)
                      +++ .||+.+|..
T Consensus        88 v~~-~GG~~~~~~   99 (104)
T PRK10287         88 AEN-AGGLKDIAM   99 (104)
T ss_pred             EEe-cCCHHHHhh
Confidence            987 699999975

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.86  E-value=4.3e-21  Score=141.13  Aligned_cols=102  Identities=18%  Similarity=0.227  Sum_probs=81.5

Q ss_pred             CccccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEE
Q 031899           38 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVG  110 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~-------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~  110 (151)
                      ....++++++.++++.       +.+|||||++.||..||||||+|+|+..+..     .+..+......+ ++++|++|
T Consensus       108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~-----~~~~l~~~~~~~-kdk~Ivvy  181 (257)
T PRK05320        108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE-----FPEALAAHRADL-AGKTVVSF  181 (257)
T ss_pred             cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh-----hHHHHHhhhhhc-CCCeEEEE
Confidence            3467899999888764       2789999999999999999999999942210     011122222223 68999999


Q ss_pred             eCCChhHHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899          111 CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       111 c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~  145 (151)
                      |.+|.|+..++..|++.||++|+.|.||+.+|.+.
T Consensus       182 C~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~  216 (257)
T PRK05320        182 CTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE  216 (257)
T ss_pred             CCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence            99999999999999999999999999999999874

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.85  E-value=7.1e-21  Score=147.82  Aligned_cols=100  Identities=29%  Similarity=0.491  Sum_probs=85.3

Q ss_pred             ccccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChh
Q 031899           39 PTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  116 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~~--~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~  116 (151)
                      ...++++++.++++.+  ++|||+|++.||..+|||||+|+|+..+..          ......++++++||+||++|.+
T Consensus       286 ~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~----------~~~~~~l~~d~~iVvyC~~G~r  355 (392)
T PRK07878        286 GSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILS----------GEALAKLPQDRTIVLYCKTGVR  355 (392)
T ss_pred             CCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcc----------hhHHhhCCCCCcEEEEcCCChH
Confidence            4578999999988754  689999999999999999999999952210          1234457889999999999999


Q ss_pred             HHHHHHHHHHCCCCceeEccccHHHHHhCCCC
Q 031899          117 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLP  148 (151)
Q Consensus       117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p  148 (151)
                      |..+++.|++.||++|++|+||+.+|..+..|
T Consensus       356 S~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~  387 (392)
T PRK07878        356 SAEALAALKKAGFSDAVHLQGGVVAWAKQVDP  387 (392)
T ss_pred             HHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence            99999999999999999999999999987654

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.84  E-value=2.3e-20  Score=140.87  Aligned_cols=99  Identities=22%  Similarity=0.344  Sum_probs=81.5

Q ss_pred             ccccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHh--ccCCCCeEEEEeCCCh
Q 031899           39 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVGCQSGK  115 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~~c~~g~  115 (151)
                      ...++++++.+++.++ ++|||||++.||..||||||+|+|+..+.        ++...+..  ...++++||+||.+|.
T Consensus       111 ~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~--------~~~~~l~~~~~~~kdk~IvvyC~~G~  182 (314)
T PRK00142        111 GTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR--------EFPPWVEENLDPLKDKKVVMYCTGGI  182 (314)
T ss_pred             CcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhh--------hhHHHHHHhcCCCCcCeEEEECCCCc
Confidence            3578999998887654 89999999999999999999999985321        11112211  2357899999999999


Q ss_pred             hHHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899          116 RSMMAATDLLNAGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       116 ~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~  145 (151)
                      |+..++..|++.||++|+.|+||+.+|...
T Consensus       183 Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~  212 (314)
T PRK00142        183 RCEKASAWMKHEGFKEVYQLEGGIITYGED  212 (314)
T ss_pred             HHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence            999999999999999999999999999774

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.84  E-value=1.3e-20  Score=122.93  Aligned_cols=95  Identities=24%  Similarity=0.326  Sum_probs=70.7

Q ss_pred             cccCHHHHHHHHhCC-------CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEE
Q 031899           40 TSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVG  110 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~-------~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~  110 (151)
                      ..++++++.+++.++       .+|||||++ ||..||||||+|+|+..+.        +.+......+  .+.++||+|
T Consensus         2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~--------~~~~~~~~~~~~~~~~~iv~~   72 (113)
T cd01443           2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCY--------QTLPQVYALFSLAGVKLAIFY   72 (113)
T ss_pred             cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHH--------HHHHHHHHHhhhcCCCEEEEE
Confidence            357899999988764       789999999 9999999999999985221        1122222222  346789999


Q ss_pred             eCC-ChhHHHHHHHHH----HCCC--CceeEccccHHHHH
Q 031899          111 CQS-GKRSMMAATDLL----NAGF--AGITDIAGGFAAWR  143 (151)
Q Consensus       111 c~~-g~~a~~~~~~L~----~~G~--~~v~~l~GG~~~W~  143 (151)
                      |.+ |.|+..++..|.    +.||  .++++|+||+.+|.
T Consensus        73 C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          73 CGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             CCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence            996 578777775543    4575  68999999999995

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>PRK07411 hypothetical protein; Validated

Probab=99.83  E-value=6.2e-20  Score=142.41  Aligned_cols=104  Identities=29%  Similarity=0.452  Sum_probs=83.8

Q ss_pred             CccccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCC
Q 031899           38 VPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG  114 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~~---~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g  114 (151)
                      ....++++++.++++.+   .+|||||++.||..||||||+|+|+.++...      ... .....++++++||+||.+|
T Consensus       280 ~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~------~~~-~~l~~l~~d~~IVvyC~~G  352 (390)
T PRK07411        280 EIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENG------PGV-EKVKELLNGHRLIAHCKMG  352 (390)
T ss_pred             ccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcc------cch-HHHhhcCCCCeEEEECCCC
Confidence            34678999999888643   6899999999999999999999998533211      001 1233456789999999999


Q ss_pred             hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCC
Q 031899          115 KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       115 ~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv  149 (151)
                      .||..+++.|++.||++ +.|.||+.+|.++..|.
T Consensus       353 ~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~  386 (390)
T PRK07411        353 GRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS  386 (390)
T ss_pred             HHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence            99999999999999975 57999999999886664

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.82  E-value=4.4e-20  Score=140.70  Aligned_cols=105  Identities=28%  Similarity=0.409  Sum_probs=79.1

Q ss_pred             CHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCC----------C---------CCCCHH---HHHHHHhc
Q 031899           43 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------G---------MTKNLK---FVEEVSTR  100 (151)
Q Consensus        43 ~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~----------~---------~~~~~~---~~~~~~~~  100 (151)
                      ...++.++..++.+|||||++.||..||||||+|+|+......          +         .+..+.   .+...+..
T Consensus         4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~   83 (345)
T PRK11784          4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWAD   83 (345)
T ss_pred             cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHh
Confidence            4567777777889999999999999999999999999532210          0         011111   11222223


Q ss_pred             cC-CCCeEEEEeC-CChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCC
Q 031899          101 FR-KHDEIIVGCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP  148 (151)
Q Consensus       101 ~~-~~~~iv~~c~-~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p  148 (151)
                      ++ ++++||+||. +|.||..+++.|...|| +++.|+||+.+|+..+.+
T Consensus        84 ~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~  132 (345)
T PRK11784         84 FPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVID  132 (345)
T ss_pred             cccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHH
Confidence            33 7889999995 78999999999999999 699999999999987653

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.81  E-value=3.7e-19  Score=131.74  Aligned_cols=114  Identities=23%  Similarity=0.279  Sum_probs=95.8

Q ss_pred             CccccCHHHHHHHHhC------CCEEEecCCh--hhHhcCCCCCceeeccccccC-----CCCCCCHHHHHHHHhc--cC
Q 031899           38 VPTSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FR  102 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~------~~~iiDvR~~--~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--~~  102 (151)
                      ....++++.+.+.+..      ++.+++++..  .+|..+|||||+++++.....     ..++++++.+..++..  +.
T Consensus         9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~   88 (285)
T COG2897           9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIR   88 (285)
T ss_pred             cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence            3467899999887753      4566666655  899999999999999976552     4678888888888886  57


Q ss_pred             CCCeEEEEeCCC-hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          103 KHDEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       103 ~~~~iv~~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      .+.+||+|.+.+ ..|.++++.|+.+|+++|++|+||+++|.++|+|+++
T Consensus        89 ~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~  138 (285)
T COG2897          89 NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLET  138 (285)
T ss_pred             CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccC
Confidence            899999999755 6799999999999999999999999999999999873

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.81  E-value=2.2e-19  Score=137.90  Aligned_cols=95  Identities=33%  Similarity=0.522  Sum_probs=78.3

Q ss_pred             ccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHH-hccCCCCeEEEEeCCChhH
Q 031899           39 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-TRFRKHDEIIVGCQSGKRS  117 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iv~~c~~g~~a  117 (151)
                      ...++++++.++ ..+.+|||+|++.||..+|||||+|+|+.++           ..... ..+++++++|+||++|.+|
T Consensus       260 ~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~~l-----------~~~~~~~~~~~~~~IvvyC~~G~rS  327 (355)
T PRK05597        260 GEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLSAI-----------REGANPPSVSAGDEVVVYCAAGVRS  327 (355)
T ss_pred             ccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHHHh-----------hhccccccCCCCCeEEEEcCCCHHH
Confidence            346778888744 4568999999999999999999999999522           11111 1356789999999999999


Q ss_pred             HHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899          118 MMAATDLLNAGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~  145 (151)
                      ..+++.|++.||++|+.|+||+.+|.++
T Consensus       328 ~~Aa~~L~~~G~~nV~~L~GGi~~W~~~  355 (355)
T PRK05597        328 AQAVAILERAGYTGMSSLDGGIEGWLDS  355 (355)
T ss_pred             HHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence            9999999999999999999999999763

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.81  E-value=1e-19  Score=136.92  Aligned_cols=95  Identities=29%  Similarity=0.430  Sum_probs=71.2

Q ss_pred             CCEEEecCChhhHhcCCCCCceeeccccccCC---CCC-------------------CCHHHHHHHHhccCCCCeEEEEe
Q 031899           54 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS---GMT-------------------KNLKFVEEVSTRFRKHDEIIVGC  111 (151)
Q Consensus        54 ~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~---~~~-------------------~~~~~~~~~~~~~~~~~~iv~~c  111 (151)
                      +..|||||++.||..||||||+|+|+....+.   ++.                   .-++.+..+....++++.||+||
T Consensus         2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC   81 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC   81 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence            35799999999999999999999999532210   000                   01112333333345566699999


Q ss_pred             C-CChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCC
Q 031899          112 Q-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       112 ~-~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv  149 (151)
                      . +|.||..+++.|+..|| ++++|+||+.+|+..+.+.
T Consensus        82 ~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~  119 (311)
T TIGR03167        82 WRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQ  119 (311)
T ss_pred             CCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhh
Confidence            5 78999999999999999 6999999999999887543

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.79  E-value=7.7e-19  Score=117.42  Aligned_cols=102  Identities=20%  Similarity=0.199  Sum_probs=75.0

Q ss_pred             cCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCceeeccccccCC----C------CCCCHHHHHHHHhccCCCCeEE
Q 031899           42 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----G------MTKNLKFVEEVSTRFRKHDEII  108 (151)
Q Consensus        42 i~~~~~~~~~~~---~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~iv  108 (151)
                      |+++++.+++++   +++|||+|++.+|..+|||||+|+|+..+...    +      ++..++....+.. . ++++||
T Consensus         2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~VV   79 (132)
T cd01446           2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRR-G-ESLAVV   79 (132)
T ss_pred             cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhc-C-CCCeEE
Confidence            688999888864   48999999999999999999999998643311    0      1222222222222 2 578999


Q ss_pred             EEeCCChh---------HHHHHHHHHH--CCCCceeEccccHHHHHhC
Q 031899          109 VGCQSGKR---------SMMAATDLLN--AGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       109 ~~c~~g~~---------a~~~~~~L~~--~G~~~v~~l~GG~~~W~~~  145 (151)
                      +||.++.+         +..++..|..  .++.+|++|+||+.+|.+.
T Consensus        80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~  127 (132)
T cd01446          80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE  127 (132)
T ss_pred             EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence            99997754         5666777776  4678999999999999763

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.74  E-value=7.2e-18  Score=129.94  Aligned_cols=94  Identities=18%  Similarity=0.263  Sum_probs=73.4

Q ss_pred             cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCC---CceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCCh
Q 031899           40 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  115 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIp---gAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~  115 (151)
                      ..++++++.+++.++ .+|||||++.||..||||   ||+|+|+..+...     .+. ......++++ +||+||.+|.
T Consensus       271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~-----~~~-~~~l~~~~~~-~Ivv~C~sG~  343 (370)
T PRK05600        271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDD-----ADI-LHALSPIDGD-NVVVYCASGI  343 (370)
T ss_pred             cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcc-----hhh-hhhccccCCC-cEEEECCCCh
Confidence            367899998888765 789999999999999998   5999998422100     000 1112233444 8999999999


Q ss_pred             hHHHHHHHHHHCCCCc-eeEccccHH
Q 031899          116 RSMMAATDLLNAGFAG-ITDIAGGFA  140 (151)
Q Consensus       116 ~a~~~~~~L~~~G~~~-v~~l~GG~~  140 (151)
                      ||..++..|++.||++ |++|.||+.
T Consensus       344 RS~~Aa~~L~~~G~~~~v~~l~GG~~  369 (370)
T PRK05600        344 RSADFIEKYSHLGHELTLHNLPGGVN  369 (370)
T ss_pred             hHHHHHHHHHHcCCCCceEEeccccC
Confidence            9999999999999986 999999975

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.68  E-value=3.1e-16  Score=114.46  Aligned_cols=136  Identities=18%  Similarity=0.340  Sum_probs=102.6

Q ss_pred             cccCccccccccccccccCccccCcccc-cC-----CccccCHHHHHHHH--------hCCCEEEecCChhhHh------
Q 031899            8 QRCDNIGFISSKILSFCPKASLRGNLEA-VG-----VPTSVPVRVAHELL--------QAGHRYLDVRTPEEFS------   67 (151)
Q Consensus         8 ~~~~~v~~l~gg~~~w~~~~~~~~~~~~-~~-----~~~~i~~~~~~~~~--------~~~~~iiDvR~~~e~~------   67 (151)
                      .++.+|++|+||+.+|+...-...+-.. .+     ....++...+..+.        .+++..||.|+..+|.      
T Consensus       112 fGh~~VslL~GG~~~Wk~~g~~~~s~~~~~p~~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~  191 (286)
T KOG1529|consen  112 FGHTKVSLLNGGFRAWKAAGGPVDSSKVETPYSPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEP  191 (286)
T ss_pred             hCccEEEEecCcHHHHHHcCCccccccccCCCCCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCC
Confidence            6889999999999999986543222111 01     11233333333222        2358999999998886      


Q ss_pred             -----cCCCCCceeeccccccCC-CCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899           68 -----AGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF  139 (151)
Q Consensus        68 -----~ghIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~  139 (151)
                           .||||||+|+|+..++.. +....++.+...+..  +..++|+|+-|++|..+...+-.|.+.| .++.+|+|++
T Consensus       192 ~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~  270 (286)
T KOG1529|consen  192 RSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSW  270 (286)
T ss_pred             cccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccH
Confidence                 689999999999888764 444447777777665  5568999999999999999999999999 6899999999


Q ss_pred             HHHHh
Q 031899          140 AAWRQ  144 (151)
Q Consensus       140 ~~W~~  144 (151)
                      ..|..
T Consensus       271 ~Ew~~  275 (286)
T KOG1529|consen  271 TEWAL  275 (286)
T ss_pred             HHHhh
Confidence            99985

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.63  E-value=1.8e-15  Score=120.46  Aligned_cols=78  Identities=17%  Similarity=0.254  Sum_probs=67.0

Q ss_pred             HHHHHhCCCEEEecCChhhHhcCCCCC----ceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHH
Q 031899           47 AHELLQAGHRYLDVRTPEEFSAGHATG----AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAAT  122 (151)
Q Consensus        47 ~~~~~~~~~~iiDvR~~~e~~~ghIpg----Ai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~  122 (151)
                      ..+.+..+.++||||++.||..+||||    |+|+|+            ..+......+++++++|+||.+|.||..++.
T Consensus       400 ~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~------------~~l~~~~~~l~~~~~iivyC~~G~rS~~aa~  467 (482)
T PRK01269        400 TVSELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPF------------YKLSTQFGDLDQSKTYLLYCDRGVMSRLQAL  467 (482)
T ss_pred             HHHhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCH------------HHHHHHHhhcCCCCeEEEECCCCHHHHHHHH
Confidence            333445678999999999999999999    999999            3444455567889999999999999999999


Q ss_pred             HHHHCCCCceeEcc
Q 031899          123 DLLNAGFAGITDIA  136 (151)
Q Consensus       123 ~L~~~G~~~v~~l~  136 (151)
                      .|++.||+||++|.
T Consensus       468 ~L~~~G~~nv~~y~  481 (482)
T PRK01269        468 YLREQGFSNVKVYR  481 (482)
T ss_pred             HHHHcCCccEEecC
Confidence            99999999999875

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.50  E-value=2.7e-14  Score=104.94  Aligned_cols=101  Identities=23%  Similarity=0.315  Sum_probs=80.6

Q ss_pred             ccccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhH
Q 031899           39 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  117 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a  117 (151)
                      -..++|++..+++.+ ++++||+|...||+.||..||++.+...+.     .-+..+.+..+.+ ++++|+.||..|.|.
T Consensus       112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFr-----efP~~v~~~~~~~-~~KkVvmyCTGGIRC  185 (308)
T COG1054         112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFR-----EFPAWVEENLDLL-KDKKVVMYCTGGIRC  185 (308)
T ss_pred             cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhh-----hhHHHHHHHHHhc-cCCcEEEEcCCceee
Confidence            357899999888865 499999999999999999999999984221     0112233333333 467999999999999


Q ss_pred             HHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899          118 MMAATDLLNAGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~  145 (151)
                      ..+..+|+..||++|+-|+||+-.+.+.
T Consensus       186 EKas~~m~~~GF~eVyhL~GGIl~Y~e~  213 (308)
T COG1054         186 EKASAWMKENGFKEVYHLEGGILKYLED  213 (308)
T ss_pred             hhhHHHHHHhcchhhhcccchHHHHhhh
Confidence            9999999999999999999999877553

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=1.1e-13  Score=103.21  Aligned_cols=97  Identities=24%  Similarity=0.351  Sum_probs=74.9

Q ss_pred             CccccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc------CCC
Q 031899           38 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF------RKH  104 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~-------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~------~~~  104 (151)
                      ....|+++.++.+++.       .++|||+|-+.||..|||+||+|++..           +.+...+-..      .+.
T Consensus       154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~-----------~~~~~~f~~~~~~~~~~~~  222 (325)
T KOG3772|consen  154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSK-----------ELLQDFFLLKDGVPSGSKR  222 (325)
T ss_pred             cccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccH-----------hhhhhhhccccccccccCc
Confidence            4568999999999874       266999999999999999999999984           2222222211      123


Q ss_pred             CeEEEEeC-CChhHHHHHHHHHH------------CCCCceeEccccHHHHHhC
Q 031899          105 DEIIVGCQ-SGKRSMMAATDLLN------------AGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       105 ~~iv~~c~-~g~~a~~~~~~L~~------------~G~~~v~~l~GG~~~W~~~  145 (151)
                      .-+||||. +..|+..+|..|+.            +-|..+++|+|||.+|-..
T Consensus       223 ~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~  276 (325)
T KOG3772|consen  223 VILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN  276 (325)
T ss_pred             eeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence            46899997 66899999999984            4566799999999999764

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.48  E-value=4.3e-13  Score=98.15  Aligned_cols=112  Identities=23%  Similarity=0.303  Sum_probs=89.3

Q ss_pred             cccCHHHHHHHHhC-CCEEEecC---------ChhhHhcCCCCCceeeccccccC-----CCCCCCHHHHHHHHhc--cC
Q 031899           40 TSVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FR  102 (151)
Q Consensus        40 ~~i~~~~~~~~~~~-~~~iiDvR---------~~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--~~  102 (151)
                      .+++++.+.+.+.+ +++|||.-         ...||..-|||||.++.++....     ..+++.++.+++....  ++
T Consensus         5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~   84 (286)
T KOG1529|consen    5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD   84 (286)
T ss_pred             cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence            45677777777654 48999985         34678889999999999865432     3566666666665554  57


Q ss_pred             CCCeEEEEeC--CC-hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          103 KHDEIIVGCQ--SG-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       103 ~~~~iv~~c~--~g-~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      +++.+|||.+  .| ..|.+++|+++..|+++|.+|+||+.+|+++|+|+++
T Consensus        85 n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s  136 (286)
T KOG1529|consen   85 NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDS  136 (286)
T ss_pred             CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccc
Confidence            8889999988  66 4688999999999999999999999999999999863

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.42  E-value=4.1e-13  Score=100.55  Aligned_cols=105  Identities=25%  Similarity=0.372  Sum_probs=80.9

Q ss_pred             CccccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc-CCCCeEEEEeCCC
Q 031899           38 VPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVGCQSG  114 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~~--~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~~c~~g  114 (151)
                      ....++..+++++++++  .++||||++.||+..|+|+|+|||+.++.....       +.....+ ...++|+++|..|
T Consensus       315 ~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~-------~~~~~~~~~~~~~I~ViCrrG  387 (427)
T KOG2017|consen  315 PDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG-------KKLQGDLNTESKDIFVICRRG  387 (427)
T ss_pred             hhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh-------hhhcccccccCCCEEEEeCCC
Confidence            34688999999999874  889999999999999999999999953321110       1111223 3467899999999


Q ss_pred             hhHHHHHHHHHHCCCC-ceeEccccHHHHHhCCCCC
Q 031899          115 KRSMMAATDLLNAGFA-GITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       115 ~~a~~~~~~L~~~G~~-~v~~l~GG~~~W~~~g~pv  149 (151)
                      ..|.++.+.|++...+ .|..+-||+.+|...-.|.
T Consensus       388 NdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~  423 (427)
T KOG2017|consen  388 NDSQRAVRILREKFPDSSVRDVIGGLKAWAAKVDPN  423 (427)
T ss_pred             CchHHHHHHHHhhCCchhhhhhhhHHHHHHHhcCcC
Confidence            9999999999987653 5777889999998864443

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.96  E-value=2.3e-09  Score=79.80  Aligned_cols=97  Identities=21%  Similarity=0.344  Sum_probs=75.2

Q ss_pred             CccccCHHHHHHHHhCC-------CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHh-c-cCCCCeEE
Q 031899           38 VPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-R-FRKHDEII  108 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~~-------~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~iv  108 (151)
                      ..+.|+++.++.+++..       .+|||+|-+.||..|||-+|+||...           +.+...+. + +.--.-+|
T Consensus       240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~-----------~~l~~~F~hkplThp~aLi  308 (427)
T COG5105         240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST-----------KKLGLLFRHKPLTHPRALI  308 (427)
T ss_pred             chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH-----------HHHHHHHHhccccCceeEE
Confidence            34689999999988752       66999999999999999999999873           33444333 2 23345689


Q ss_pred             EEeC-CChhHHHHHHHHHH------------CCCCceeEccccHHHHHhC
Q 031899          109 VGCQ-SGKRSMMAATDLLN------------AGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       109 ~~c~-~g~~a~~~~~~L~~------------~G~~~v~~l~GG~~~W~~~  145 (151)
                      +.|. +..|+..+|..|+.            +-|..|++|+||+.++-..
T Consensus       309 fHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n  358 (427)
T COG5105         309 FHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSN  358 (427)
T ss_pred             EEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhc
Confidence            9998 66899999999986            3456799999999887543

>COG2603 Predicted ATPase [General function prediction only]

Probab=97.89  E-value=1e-05  Score=60.02  Aligned_cols=100  Identities=29%  Similarity=0.349  Sum_probs=65.6

Q ss_pred             CHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccC---------CCCCCC-------------HHHHHHHHhc
Q 031899           43 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVG---------SGMTKN-------------LKFVEEVSTR  100 (151)
Q Consensus        43 ~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~---------~~~~~~-------------~~~~~~~~~~  100 (151)
                      +.+....+...+..+||||+|.||..|+.|+++|+|.....+         ......             ..+.-.....
T Consensus         4 ~~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~   83 (334)
T COG2603           4 TEQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKA   83 (334)
T ss_pred             hHHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            345566677778899999999999999999999999853221         001110             0111111112


Q ss_pred             cCCCCeEEEEeCC-ChhHHHHHHHH-HHCCCCceeEccccHHHHH
Q 031899          101 FRKHDEIIVGCQS-GKRSMMAATDL-LNAGFAGITDIAGGFAAWR  143 (151)
Q Consensus       101 ~~~~~~iv~~c~~-g~~a~~~~~~L-~~~G~~~v~~l~GG~~~W~  143 (151)
                      +-.+.++-++|.. |.|+...+.+| ...|++ .--+.||+.+.+
T Consensus        84 f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr  127 (334)
T COG2603          84 FQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR  127 (334)
T ss_pred             HHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence            2235566666975 57999999999 778875 445678987754

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=97.75  E-value=0.00034  Score=45.20  Aligned_cols=77  Identities=16%  Similarity=0.186  Sum_probs=42.0

Q ss_pred             cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCC--------------CceeeccccccCCCCCCCHHHHHHHHhccC-C
Q 031899           40 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT--------------GAINVPYMYRVGSGMTKNLKFVEEVSTRFR-K  103 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIp--------------gAi~ip~~~~~~~~~~~~~~~~~~~~~~~~-~  103 (151)
                      ..++++++.++.+.| -.||+.|+..|-.  +-|              .-+|+|..     ....+.+.+..+...+. .
T Consensus        13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~-----~~~~~~~~v~~f~~~l~~~   85 (110)
T PF04273_consen   13 GQPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVD-----GGAITEEDVEAFADALESL   85 (110)
T ss_dssp             CS--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE---------TTT--HHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecC-----CCCCCHHHHHHHHHHHHhC
Confidence            467999999999999 5799999875521  111              13566653     11123344555544442 3


Q ss_pred             CCeEEEEeCCChhHHHHHHH
Q 031899          104 HDEIIVGCQSGKRSMMAATD  123 (151)
Q Consensus       104 ~~~iv~~c~~g~~a~~~~~~  123 (151)
                      .+||++||.+|.|+..++..
T Consensus        86 ~~Pvl~hC~sG~Ra~~l~~l  105 (110)
T PF04273_consen   86 PKPVLAHCRSGTRASALWAL  105 (110)
T ss_dssp             TTSEEEE-SCSHHHHHHHHH
T ss_pred             CCCEEEECCCChhHHHHHHH
Confidence            56999999999999765544

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=97.71  E-value=0.00041  Score=46.43  Aligned_cols=86  Identities=19%  Similarity=0.181  Sum_probs=52.8

Q ss_pred             cccCHHHHHHHHhCC-CEEEecCChhhHhcCCC----------CC--ceeeccccccCCCCCCCHHHHHHHHhccC-CCC
Q 031899           40 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHA----------TG--AINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHD  105 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghI----------pg--Ai~ip~~~~~~~~~~~~~~~~~~~~~~~~-~~~  105 (151)
                      ..++++++..+.+.+ -.|||.|+..|-....-          +|  -+++|...    ..+ +++.+..+...+. .+.
T Consensus        13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~----~~~-~~~~v~~f~~~~~~~~~   87 (135)
T TIGR01244        13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA----GDI-TPDDVETFRAAIGAAEG   87 (135)
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC----CCC-CHHHHHHHHHHHHhCCC
Confidence            467888898888778 67999999876432111          23  24565431    111 3344444433332 368


Q ss_pred             eEEEEeCCChhHHHHHHHH-HHCCCC
Q 031899          106 EIIVGCQSGKRSMMAATDL-LNAGFA  130 (151)
Q Consensus       106 ~iv~~c~~g~~a~~~~~~L-~~~G~~  130 (151)
                      ||++||.+|.|+..++..+ ...|..
T Consensus        88 pvL~HC~sG~Rt~~l~al~~~~~g~~  113 (135)
T TIGR01244        88 PVLAYCRSGTRSSLLWGFRQAAEGVP  113 (135)
T ss_pred             CEEEEcCCChHHHHHHHHHHHHcCCC
Confidence            9999999999987766543 344653

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=97.45  E-value=0.00021  Score=54.41  Aligned_cols=101  Identities=16%  Similarity=0.068  Sum_probs=62.6

Q ss_pred             ccccccCccccccccccccccCccc--cC---c--ccccCCccccCHHHHHHHHhC-CCEEEecCChhhHhc---CCCC-
Q 031899            5 GDQQRCDNIGFISSKILSFCPKASL--RG---N--LEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSA---GHAT-   72 (151)
Q Consensus         5 ~~~~~~~~v~~l~gg~~~w~~~~~~--~~---~--~~~~~~~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~---ghIp-   72 (151)
                      ..+.+| ++.+|.||+.+|......  .+   .  ......++.+...++.+.+.+ +..|||+|+..+|..   |||| 
T Consensus        95 L~~~G~-~v~~L~GG~~aw~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~  173 (311)
T TIGR03167        95 LAQIGF-RVPRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGL  173 (311)
T ss_pred             HHHcCC-CEEEecChHHHHHHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCC
Confidence            345678 588999999999774321  11   1  011123456777777766654 588999999999998   8888 


Q ss_pred             CceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCCh
Q 031899           73 GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  115 (151)
Q Consensus        73 gAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~  115 (151)
                      +..  |...     .+  ...+...+..+++.++|++-|.+..
T Consensus       174 ~~q--psq~-----~f--e~~L~~~l~~~~~~~~i~~e~es~~  207 (311)
T TIGR03167       174 GPQ--PSQK-----RF--ENALAEALRRLDPGRPIFVEDESRR  207 (311)
T ss_pred             CCC--CchH-----HH--HHHHHHHHHhCCCCceEEEEeCchh
Confidence            431  2110     00  1223333334577788888887753

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=96.84  E-value=0.00015  Score=55.20  Aligned_cols=85  Identities=8%  Similarity=0.053  Sum_probs=54.3

Q ss_pred             cccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCC--ChhH
Q 031899           40 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS--GKRS  117 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~--g~~a  117 (151)
                      .+-+++++.+.+.....++|+|....|+.+||||++|+|...+        ..++.++.. .+..+++++.-..  ....
T Consensus        14 ~i~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~~~--------~~~~~~l~~-~~~~~~i~l~~~~~~~~~f   84 (314)
T PRK00142         14 PIEDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIEQT--------EAYMAWLKA-DPRFADIRFKISEDDGHAF   84 (314)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHHHH--------HHHHHHHhh-CcCCCCceEEeccccCCCc
Confidence            4557788888887777889999999999999999999998311        112222222 1224555544333  1222


Q ss_pred             ----HHHHHHHHHCCCC-cee
Q 031899          118 ----MMAATDLLNAGFA-GIT  133 (151)
Q Consensus       118 ----~~~~~~L~~~G~~-~v~  133 (151)
                          .++...|...|++ ++.
T Consensus        85 ~~l~~~~~~eLv~~G~d~~v~  105 (314)
T PRK00142         85 PRLSVKVRKEIVALGLDDDID  105 (314)
T ss_pred             ccceeeeeeeeeecCCCCCCC
Confidence                4566677777875 554

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.84  E-value=0.00043  Score=55.95  Aligned_cols=94  Identities=18%  Similarity=0.180  Sum_probs=61.3

Q ss_pred             ccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc-----CCCCeEEEEeCC
Q 031899           39 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-----RKHDEIIVGCQS  113 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iv~~c~~  113 (151)
                      .+.++++++..+  ....++|.|...||..+|+++++|+|+..        -+..+++. ..+     ...+.++++...
T Consensus       621 ~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~~--------~ea~l~~~-~~l~~~~~~~~~~~v~~~~~  689 (725)
T KOG1093|consen  621 CPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFNN--------HEADLDWL-RFLPGIVCSEGKKCVVVGKN  689 (725)
T ss_pred             CccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCccc--------hHHHHHHh-hcchHhHHhhCCeEEEeccc
Confidence            346677776555  44789999999999999999999999941        11112221 111     134555655444


Q ss_pred             ChhHHHHHHHHHHCCCCceeEccccHHHHH
Q 031899          114 GKRSMMAATDLLNAGFAGITDIAGGFAAWR  143 (151)
Q Consensus       114 g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~  143 (151)
                      ..-+++....+..+-+.++.++++|+++..
T Consensus       690 ~K~~~e~~~~~~~mk~p~~cil~~~~~~~~  719 (725)
T KOG1093|consen  690 DKHAAERLTELYVMKVPRICILHDGFNNID  719 (725)
T ss_pred             hHHHHHHhhHHHHhcccHHHHHHHHHhhcC
Confidence            445555555555555778889999998543

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=96.49  E-value=0.054  Score=37.23  Aligned_cols=95  Identities=19%  Similarity=0.289  Sum_probs=45.5

Q ss_pred             CCccccCHHHHHHHHhCC-CEEEecCChhhHhcC---CCCCc--eeeccccccCC------------------------C
Q 031899           37 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAG---HATGA--INVPYMYRVGS------------------------G   86 (151)
Q Consensus        37 ~~~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~g---hIpgA--i~ip~~~~~~~------------------------~   86 (151)
                      ..+..+++++...+.+-+ -.|||.|++.|....   .++|.  +|+|.......                        .
T Consensus        25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~  104 (164)
T PF13350_consen   25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYRE  104 (164)
T ss_dssp             S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHH
T ss_pred             CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHH
Confidence            345678999998888767 679999999997753   34454  34554211110                        0


Q ss_pred             CC-CCHHHHHHHHhcc-CCCCeEEEEeCCC-hh-HHHHHHHHHHCCCCc
Q 031899           87 MT-KNLKFVEEVSTRF-RKHDEIIVGCQSG-KR-SMMAATDLLNAGFAG  131 (151)
Q Consensus        87 ~~-~~~~~~~~~~~~~-~~~~~iv~~c~~g-~~-a~~~~~~L~~~G~~~  131 (151)
                      ++ .....+..++..+ +...+++++|..| .| ...++-.|..+|...
T Consensus       105 ~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~~  153 (164)
T PF13350_consen  105 MLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVPD  153 (164)
T ss_dssp             GGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred             HHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence            11 1133344444432 3346999999988 34 445566677888853

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=95.91  E-value=0.025  Score=44.94  Aligned_cols=82  Identities=18%  Similarity=0.251  Sum_probs=50.9

Q ss_pred             CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHh--------cc-----CCCCeEEEEeCCC------h
Q 031899           55 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--------RF-----RKHDEIIVGCQSG------K  115 (151)
Q Consensus        55 ~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--------~~-----~~~~~iv~~c~~g------~  115 (151)
                      +.|||+|+.++|..||+..|.|+...-     ++.++..++....        .+     ..+..+.|. ++|      .
T Consensus       327 FFiVDcRpaeqynaGHlstaFhlDc~l-----mlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfm-GsGr~EED~Y  400 (669)
T KOG3636|consen  327 FFIVDCRPAEQYNAGHLSTAFHLDCVL-----MLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFM-GSGRDEEDNY  400 (669)
T ss_pred             EEEEeccchhhcccccchhhhcccHHH-----HhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEe-ccCcchHHHH
Confidence            679999999999999999999988742     2223332222211        12     123455554 444      2


Q ss_pred             hHHHHHHHHHHCCCCceeEccccHHHHH
Q 031899          116 RSMMAATDLLNAGFAGITDIAGGFAAWR  143 (151)
Q Consensus       116 ~a~~~~~~L~~~G~~~v~~l~GG~~~W~  143 (151)
                      .-..+|.+|++.- ..|.++.||+....
T Consensus       401 mnMviA~FlQKnk-~yVS~~~GGy~~lh  427 (669)
T KOG3636|consen  401 MNMVIAMFLQKNK-LYVSFVQGGYKKLH  427 (669)
T ss_pred             HHHHHHHHHhcCc-eEEEEecchHHHHH
Confidence            2334555555543 46999999998765

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.80  E-value=0.016  Score=45.32  Aligned_cols=93  Identities=11%  Similarity=0.066  Sum_probs=57.4

Q ss_pred             ccccccCccccccccccccccCccccCcccccCCccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccC
Q 031899            5 GDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVG   84 (151)
Q Consensus         5 ~~~~~~~~v~~l~gg~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~   84 (151)
                      ..+.+|++|.+|+||+..|.......      .....++..++..                |       +.++++.    
T Consensus        77 L~~~G~~~v~~l~GG~~~W~~~g~p~------~~~~~~s~~~~~~----------------y-------~r~i~l~----  123 (376)
T PRK08762         77 LRELGYTRVASVAGGFSAWKDAGLPL------ERPRLLTDEQDER----------------Y-------SRHLRLP----  123 (376)
T ss_pred             HHHcCCCceEeecCcHHHHHhcCCcc------ccccCCCHHHHHH----------------H-------HHhcchh----
Confidence            45688999999999999997652211      1223445555433                2       2233331    


Q ss_pred             CCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899           85 SGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF  139 (151)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~  139 (151)
                             .+-.+....+ .+++|+++ +.|..+..++..|...|+.++.++++..
T Consensus       124 -------~~g~~~q~~l-~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~  169 (376)
T PRK08762        124 -------EVGEEGQRRL-LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDV  169 (376)
T ss_pred             -------hcCHHHHHHH-hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence                   0011112223 34455555 7777788899999999999999999874

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=95.17  E-value=0.017  Score=42.84  Aligned_cols=100  Identities=19%  Similarity=0.188  Sum_probs=57.3

Q ss_pred             ccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeecccccc----CCCCCCCHHHHHHHHhc-cC----CCCeEEEE
Q 031899           41 SVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRV----GSGMTKNLKFVEEVSTR-FR----KHDEIIVG  110 (151)
Q Consensus        41 ~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~----~~~~~~~~~~~~~~~~~-~~----~~~~iv~~  110 (151)
                      .++.+++.+.+.. +++++|+|+    +..||.+|+|+-+..+.    ..+.++-...+...... ..    +..++|.|
T Consensus         5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~vily   80 (343)
T KOG1717|consen    5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTVILY   80 (343)
T ss_pred             HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCcceeeec
Confidence            3567777766654 489999999    66899999998774222    11111111111111110 11    23567888


Q ss_pred             eCCC--h----h-HHH---HHHHHHHCCCCceeEccccHHHHHhC
Q 031899          111 CQSG--K----R-SMM---AATDLLNAGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       111 c~~g--~----~-a~~---~~~~L~~~G~~~v~~l~GG~~~W~~~  145 (151)
                      ..+.  .    . +..   .-+.++..|+ .++.|.|||..++.+
T Consensus        81 D~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e  124 (343)
T KOG1717|consen   81 DESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAE  124 (343)
T ss_pred             ccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhh
Confidence            7652  0    0 111   2245566787 688999999887664

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=94.49  E-value=0.09  Score=40.73  Aligned_cols=61  Identities=13%  Similarity=0.101  Sum_probs=38.1

Q ss_pred             cccccCccccccccccccccCcc--ccCcc-----cccCCccccCHHHH-HHHHhCCCEEEecCChhhHh
Q 031899            6 DQQRCDNIGFISSKILSFCPKAS--LRGNL-----EAVGVPTSVPVRVA-HELLQAGHRYLDVRTPEEFS   67 (151)
Q Consensus         6 ~~~~~~~v~~l~gg~~~w~~~~~--~~~~~-----~~~~~~~~i~~~~~-~~~~~~~~~iiDvR~~~e~~   67 (151)
                      ...+| ++..|.||+.+|.....  +....     -....++.....++ .++.+.+..+||+|+..+|.
T Consensus       110 ~~~G~-~v~~L~GG~~awr~~~~~~~~~~~~~~~~ivl~G~TGsGKT~iL~~L~~~~~~vlDlE~~aehr  178 (345)
T PRK11784        110 KEAGI-DVPRLEGGYKAYRRFVIDTLEEAPAQFPLVVLGGNTGSGKTELLQALANAGAQVLDLEGLANHR  178 (345)
T ss_pred             HHcCC-CcEEEcCCHHHHHHhhHHHHhhhcccCceEecCCCCcccHHHHHHHHHhcCCeEEECCchhhhc
Confidence            45677 58899999999987432  11100     11122334445554 44445568899999999998

>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.22  E-value=0.51  Score=30.90  Aligned_cols=81  Identities=17%  Similarity=0.126  Sum_probs=50.9

Q ss_pred             ccccCHHHHHHHHhCC-CEEEecCChhhHh-------------cCCCCCceeeccccccCCCCCCCHHHHHHHHhccC-C
Q 031899           39 PTSVPVRVAHELLQAG-HRYLDVRTPEEFS-------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-K  103 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~-------------~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~-~  103 (151)
                      ...++++++.++...+ ..||--|+..|-.             ..-+. -.++|..     +.-..+..++.+...++ .
T Consensus        13 sgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~-----~~~iT~~dV~~f~~Al~ea   86 (130)
T COG3453          13 SGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT-----GGGITEADVEAFQRALDEA   86 (130)
T ss_pred             cCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-----CCCCCHHHHHHHHHHHHHh
Confidence            3567899999998888 5689999755421             11111 3345542     11123345555555553 4


Q ss_pred             CCeEEEEeCCChhHHHHHHHHH
Q 031899          104 HDEIIVGCQSGKRSMMAATDLL  125 (151)
Q Consensus       104 ~~~iv~~c~~g~~a~~~~~~L~  125 (151)
                      +.||+-||.+|.||..++..-+
T Consensus        87 egPVlayCrsGtRs~~ly~~~~  108 (130)
T COG3453          87 EGPVLAYCRSGTRSLNLYGLGE  108 (130)
T ss_pred             CCCEEeeecCCchHHHHHHHHH
Confidence            7899999999999987665433

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=93.66  E-value=0.34  Score=32.00  Aligned_cols=81  Identities=20%  Similarity=0.205  Sum_probs=41.8

Q ss_pred             HHHHHhCC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc----cCCCCeEEEEeCCC-hhHHH-
Q 031899           47 AHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSG-KRSMM-  119 (151)
Q Consensus        47 ~~~~~~~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~~c~~g-~~a~~-  119 (151)
                      +..+.+.+ ..||+++...+.....--.-+++|..+..   .....+.+......    ...+.+|+|+|..| .||.. 
T Consensus        19 ~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~---~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v   95 (138)
T smart00195       19 LALLKKLGITHVINVTNEVPNLNKKGFTYLGVPILDNT---ETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATL   95 (138)
T ss_pred             HHHHHHcCCCEEEEccCCCCCCCCCCCEEEEEECCCCC---CCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHH
Confidence            34444556 57999987654221100123466654311   11112223332222    35678999999998 46553 


Q ss_pred             -HHHHHHHCCCC
Q 031899          120 -AATDLLNAGFA  130 (151)
Q Consensus       120 -~~~~L~~~G~~  130 (151)
                       ++..+...|++
T Consensus        96 ~~~yl~~~~~~~  107 (138)
T smart00195       96 IIAYLMKYRNLS  107 (138)
T ss_pred             HHHHHHHHhCCC
Confidence             34455666763

>PLN02727 NAD kinase

Probab=93.39  E-value=0.49  Score=41.09  Aligned_cols=72  Identities=15%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCC------------CceeeccccccCCCCCCCHHHHHHHHhcc-C-CC
Q 031899           40 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT------------GAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-KH  104 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIp------------gAi~ip~~~~~~~~~~~~~~~~~~~~~~~-~-~~  104 (151)
                      ..++++++..+.+.+ -.||+.|+..|- .+..+            .-+|+|..    ......++.+.++.+.+ + ..
T Consensus       267 gQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs----~~~apt~EqVe~fa~~l~~slp  341 (986)
T PLN02727        267 GQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVE----VRTAPSAEQVEKFASLVSDSSK  341 (986)
T ss_pred             CCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecC----CCCCCCHHHHHHHHHHHHhhcC
Confidence            478999999998888 569999997761 22211            23566652    12233456677776666 3 47


Q ss_pred             CeEEEEeCCChh
Q 031899          105 DEIIVGCQSGKR  116 (151)
Q Consensus       105 ~~iv~~c~~g~~  116 (151)
                      +||++||.+|.+
T Consensus       342 kPVLvHCKSGar  353 (986)
T PLN02727        342 KPIYLHSKEGVW  353 (986)
T ss_pred             CCEEEECCCCCc
Confidence            899999999973

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=93.28  E-value=0.45  Score=31.23  Aligned_cols=80  Identities=20%  Similarity=0.229  Sum_probs=41.8

Q ss_pred             HHHHHhCC-CEEEecCChhhHhcCCCCC--ceeeccccccCCCCCCCHHHHHHH----HhccCCCCeEEEEeCCCh-hHH
Q 031899           47 AHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEEV----STRFRKHDEIIVGCQSGK-RSM  118 (151)
Q Consensus        47 ~~~~~~~~-~~iiDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~~~~~~~~~----~~~~~~~~~iv~~c~~g~-~a~  118 (151)
                      ...+.+.+ ..|||+++..+...-+.+|  -.++|+.+....   .....+...    ......+++|+|+|..|. ||.
T Consensus        20 ~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~   96 (139)
T cd00127          20 KELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQ---DISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSA   96 (139)
T ss_pred             HHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCC---ChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhH
Confidence            33444456 6799999988752222232  345665432211   111222222    222345689999999884 665


Q ss_pred             H--HHHHHHHCCC
Q 031899          119 M--AATDLLNAGF  129 (151)
Q Consensus       119 ~--~~~~L~~~G~  129 (151)
                      .  ++..+...|+
T Consensus        97 ~~~~~~l~~~~~~  109 (139)
T cd00127          97 TLVIAYLMKTLGL  109 (139)
T ss_pred             HHHHHHHHHHcCC
Confidence            3  3344455554

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes

Probab=89.64  E-value=1.6  Score=30.16  Aligned_cols=32  Identities=28%  Similarity=0.554  Sum_probs=24.3

Q ss_pred             CCCCeEEEEeCCCh---hHHHHHHHHHHCCCCceeE
Q 031899          102 RKHDEIIVGCQSGK---RSMMAATDLLNAGFAGITD  134 (151)
Q Consensus       102 ~~~~~iv~~c~~g~---~a~~~~~~L~~~G~~~v~~  134 (151)
                      ++..+|+++|+.|.   .+-.+++.|...|++ |.+
T Consensus        23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v   57 (169)
T PF03853_consen   23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV   57 (169)
T ss_dssp             CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred             cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence            67889999999874   466789999999995 665

In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....

>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step

Probab=86.95  E-value=0.85  Score=31.34  Aligned_cols=40  Identities=15%  Similarity=0.187  Sum_probs=23.7

Q ss_pred             CCCCeEEEEe-C----CChhHHHHHHHHHHCCCCceeEccccHHH
Q 031899          102 RKHDEIIVGC-Q----SGKRSMMAATDLLNAGFAGITDIAGGFAA  141 (151)
Q Consensus       102 ~~~~~iv~~c-~----~g~~a~~~~~~L~~~G~~~v~~l~GG~~~  141 (151)
                      +++..+++++ +    .|.....++..|+++|..+...||||-+.
T Consensus        98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs  142 (170)
T PF09992_consen   98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS  142 (170)
T ss_dssp             -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred             eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence            4555665555 4    35677789999999999999999998654

; PDB: 3OHG_A.

>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=86.42  E-value=3.5  Score=26.76  Aligned_cols=80  Identities=16%  Similarity=0.226  Sum_probs=39.4

Q ss_pred             HHhCC-CEEEecCChhhH---hcCCCCCceeeccccccCCCCCCCHHHHHHHHh-ccCCCCeEEEEeCCC-hhHHH-HHH
Q 031899           50 LLQAG-HRYLDVRTPEEF---SAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-RFRKHDEIIVGCQSG-KRSMM-AAT  122 (151)
Q Consensus        50 ~~~~~-~~iiDvR~~~e~---~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~~c~~g-~~a~~-~~~  122 (151)
                      +.+.+ ..||+++...+.   ....--.-.++|..+.........-..+..... ....+.+|+|+|..| .||.. ++.
T Consensus        14 l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a   93 (133)
T PF00782_consen   14 LKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAA   93 (133)
T ss_dssp             HHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHH
T ss_pred             HHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHH
Confidence            33445 468999976543   222222345666543111111111111222222 235678999999988 45543 333


Q ss_pred             -HHHHCCC
Q 031899          123 -DLLNAGF  129 (151)
Q Consensus       123 -~L~~~G~  129 (151)
                       .+...|.
T Consensus        94 yLm~~~~~  101 (133)
T PF00782_consen   94 YLMKKNGM  101 (133)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHcCC
Confidence             4455565

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....

>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]

Probab=86.39  E-value=1.5  Score=30.65  Aligned_cols=29  Identities=34%  Similarity=0.562  Sum_probs=18.7

Q ss_pred             cCCCCeEEEEeCCC-hhHH-HH-HHHHHHCCC
Q 031899          101 FRKHDEIIVGCQSG-KRSM-MA-ATDLLNAGF  129 (151)
Q Consensus       101 ~~~~~~iv~~c~~g-~~a~-~~-~~~L~~~G~  129 (151)
                      +.++++|+|+|..| .||. .+ |+.+...|.
T Consensus       102 ~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~  133 (180)
T COG2453         102 LSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL  133 (180)
T ss_pred             HhcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence            45677999999987 4544 33 345555444

>COG0062 Uncharacterized conserved protein [Function unknown]

Probab=86.06  E-value=3.6  Score=29.55  Aligned_cols=37  Identities=27%  Similarity=0.486  Sum_probs=27.2

Q ss_pred             HhccCC--CCeEEEEeCCC---hhHHHHHHHHHHCCCCceeEc
Q 031899           98 STRFRK--HDEIIVGCQSG---KRSMMAATDLLNAGFAGITDI  135 (151)
Q Consensus        98 ~~~~~~--~~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l  135 (151)
                      .+..+.  ..+|+++|++|   ...-.+|+.|...|++ |.++
T Consensus        41 ~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~   82 (203)
T COG0062          41 LREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL   82 (203)
T ss_pred             HHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence            334554  56899999876   4577899999999984 5543

>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species

Probab=85.47  E-value=0.72  Score=31.99  Aligned_cols=84  Identities=20%  Similarity=0.290  Sum_probs=36.0

Q ss_pred             HHHHHHHhCC-CEEEecCChhhHhcCCCCC-----------ceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeC
Q 031899           45 RVAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ  112 (151)
Q Consensus        45 ~~~~~~~~~~-~~iiDvR~~~e~~~ghIpg-----------Ai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~  112 (151)
                      .++.++...+ ..||=.=+..|...-.+|+           ..++|+.+...+....--+.++++...+..+++|+++|.
T Consensus        62 ~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~  141 (168)
T PF05706_consen   62 ADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCR  141 (168)
T ss_dssp             HHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-S
T ss_pred             HHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence            3455565555 2344455666665544542           236666432211110001123333444567889999999


Q ss_pred             CC-hhHH-HHHHHHHHCC
Q 031899          113 SG-KRSM-MAATDLLNAG  128 (151)
Q Consensus       113 ~g-~~a~-~~~~~L~~~G  128 (151)
                      .| .|+. .||-.|.++|
T Consensus       142 GGlGRtGlvAAcLLl~L~  159 (168)
T PF05706_consen  142 GGLGRTGLVAACLLLELG  159 (168)
T ss_dssp             SSSSHHHHHHHHHHHHH-
T ss_pred             CCCCHHHHHHHHHHHHHc
Confidence            87 4554 4666666665

The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.

>PRK12361 hypothetical protein; Provisional

Probab=85.01  E-value=3.2  Score=34.18  Aligned_cols=79  Identities=20%  Similarity=0.222  Sum_probs=42.1

Q ss_pred             CHHHHHHHHhCC-CEEEecCChhhHhc-CCCC---CceeeccccccCCCCCCCHHHHHHHHhc----cCCCCeEEEEeCC
Q 031899           43 PVRVAHELLQAG-HRYLDVRTPEEFSA-GHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQS  113 (151)
Q Consensus        43 ~~~~~~~~~~~~-~~iiDvR~~~e~~~-ghIp---gAi~ip~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~~c~~  113 (151)
                      ++.++..+.+.+ ..|||++.+.+... ...+   .-.++|..+...    ++.+.+++..+.    ...+.+|+|+|..
T Consensus       109 ~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~----p~~~~l~~a~~~i~~~~~~~~~VlVHC~~  184 (547)
T PRK12361        109 FPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSV----PTLAQLNQAINWIHRQVRANKSVVVHCAL  184 (547)
T ss_pred             CcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCC----CcHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence            455566665566 67999995332211 1112   245677643221    233444443333    3457889999998


Q ss_pred             C-hhHH-HHHHHHH
Q 031899          114 G-KRSM-MAATDLL  125 (151)
Q Consensus       114 g-~~a~-~~~~~L~  125 (151)
                      | .||. .++.+|.
T Consensus       185 G~sRSa~vv~ayLm  198 (547)
T PRK12361        185 GRGRSVLVLAAYLL  198 (547)
T ss_pred             CCCcHHHHHHHHHH
Confidence            8 4544 3444444

>PTZ00242 protein tyrosine phosphatase; Provisional

Probab=84.64  E-value=7.4  Score=26.86  Aligned_cols=27  Identities=30%  Similarity=0.503  Sum_probs=17.8

Q ss_pred             CCCCeEEEEeCCC-hhHH-HHHHHHHHCC
Q 031899          102 RKHDEIIVGCQSG-KRSM-MAATDLLNAG  128 (151)
Q Consensus       102 ~~~~~iv~~c~~g-~~a~-~~~~~L~~~G  128 (151)
                      .++.+|+|+|..| .|+. .++..|.+.|
T Consensus        96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~~  124 (166)
T PTZ00242         96 TPPETIAVHCVAGLGRAPILVALALVEYG  124 (166)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHHhC
Confidence            4588999999988 4554 3445554444

>COG1891 Uncharacterized protein conserved in archaea [Function unknown]

Probab=84.25  E-value=9.1  Score=27.02  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=22.4

Q ss_pred             cccCHHHHHHHHhCCCEEEecCChhh
Q 031899           40 TSVPVRVAHELLQAGHRYLDVRTPEE   65 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~~~iiDvR~~~e   65 (151)
                      ..|+.+++.+....+.-||||..|.|
T Consensus         6 SPin~eEA~eAieGGAdIiDVKNP~E   31 (235)
T COG1891           6 SPINREEAIEAIEGGADIIDVKNPAE   31 (235)
T ss_pred             ccCCHHHHHHHhhCCCceEeccCccc
Confidence            35678888888888999999999988

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]

Probab=84.21  E-value=2.5  Score=34.75  Aligned_cols=47  Identities=21%  Similarity=0.220  Sum_probs=36.5

Q ss_pred             HHHHHHHhccC--CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899           92 KFVEEVSTRFR--KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF  139 (151)
Q Consensus        92 ~~~~~~~~~~~--~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~  139 (151)
                      +....+...+.  .+.|+|++.+.-..+..+|..|..+|| +++.|.||-
T Consensus       503 ~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k  551 (673)
T KOG0333|consen  503 EKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK  551 (673)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence            33444444332  467899999998888899999999999 799999985

>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional

Probab=82.16  E-value=2.9  Score=30.88  Aligned_cols=30  Identities=23%  Similarity=0.492  Sum_probs=24.0

Q ss_pred             CeEEEEeCCC---hhHHHHHHHHHHCCCCceeEc
Q 031899          105 DEIIVGCQSG---KRSMMAATDLLNAGFAGITDI  135 (151)
Q Consensus       105 ~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l  135 (151)
                      ++|+++|+.|   ..+-.+|+.|...|+ +|.++
T Consensus        61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~-~V~v~   93 (246)
T PLN03050         61 PRVLLVCGPGNNGGDGLVAARHLAHFGY-EVTVC   93 (246)
T ss_pred             CeEEEEECCCCCchhHHHHHHHHHHCCC-eEEEE
Confidence            6799999865   567789999999999 56654

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=81.93  E-value=3.2  Score=30.85  Aligned_cols=46  Identities=17%  Similarity=0.246  Sum_probs=38.8

Q ss_pred             CCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCcee
Q 031899           88 TKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGIT  133 (151)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~  133 (151)
                      ..+-+.++.....+.++..+++||.+-.........|++.||.++.
T Consensus       172 p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie  217 (256)
T COG2519         172 PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE  217 (256)
T ss_pred             CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence            3445678888888888999999999999999999999999997654

>PRK10565 putative carbohydrate kinase; Provisional

Probab=81.59  E-value=5.3  Score=32.75  Aligned_cols=35  Identities=20%  Similarity=0.291  Sum_probs=26.0

Q ss_pred             ccCCCCeEEEEeCCC---hhHHHHHHHHHHCCCCceeEc
Q 031899          100 RFRKHDEIIVGCQSG---KRSMMAATDLLNAGFAGITDI  135 (151)
Q Consensus       100 ~~~~~~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l  135 (151)
                      .++..++|+++|+.|   ..+-.+|+.|...|| +|.++
T Consensus        56 ~~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~-~V~v~   93 (508)
T PRK10565         56 AYPDARHWLVLCGHGNNGGDGYVVARLAQAAGI-DVTLL   93 (508)
T ss_pred             hcCCCCeEEEEEcCCCchHHHHHHHHHHHHCCC-ceEEE
Confidence            345566799999876   556688999999999 45544

>TIGR00197 yjeF_nterm yjeF N-terminal region

Probab=81.33  E-value=6.6  Score=28.06  Aligned_cols=36  Identities=19%  Similarity=0.336  Sum_probs=26.2

Q ss_pred             hccCCCCeEEEEeCCC---hhHHHHHHHHHHCCCCceeEc
Q 031899           99 TRFRKHDEIIVGCQSG---KRSMMAATDLLNAGFAGITDI  135 (151)
Q Consensus        99 ~~~~~~~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l  135 (151)
                      ..++..++|+++|+.|   ..+-.+|+.|...|+ .|+++
T Consensus        40 ~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~   78 (205)
T TIGR00197        40 QAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLL   78 (205)
T ss_pred             HHcCCCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEE
Confidence            3345567899999865   567788999988776 46654

This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.

>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional

Probab=81.17  E-value=5.4  Score=32.33  Aligned_cols=30  Identities=20%  Similarity=0.378  Sum_probs=23.8

Q ss_pred             CeEEEEeCCC---hhHHHHHHHHHHCCCCceeEc
Q 031899          105 DEIIVGCQSG---KRSMMAATDLLNAGFAGITDI  135 (151)
Q Consensus       105 ~~iv~~c~~g---~~a~~~~~~L~~~G~~~v~~l  135 (151)
                      ++|+|+|+.|   ..+-.+|+.|...|++ |.++
T Consensus        60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~   92 (462)
T PLN03049         60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC   92 (462)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence            6899999876   4566899999999995 5543

>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=80.33  E-value=3.8  Score=28.26  Aligned_cols=41  Identities=17%  Similarity=0.353  Sum_probs=22.9

Q ss_pred             CHHHHHHHHhc-cC-CCCeEEEEeCCC-hhHHHHHHHHHH-CCCC
Q 031899           90 NLKFVEEVSTR-FR-KHDEIIVGCQSG-KRSMMAATDLLN-AGFA  130 (151)
Q Consensus        90 ~~~~~~~~~~~-~~-~~~~iv~~c~~g-~~a~~~~~~L~~-~G~~  130 (151)
                      ..+.+.+.+.. ++ .+.||+++|..| .|...+...|++ .|..
T Consensus        75 ~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~  119 (164)
T PF03162_consen   75 SEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWS  119 (164)
T ss_dssp             -HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-
T ss_pred             CHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCC
Confidence            34555555554 33 468999999988 566666666654 4553

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.

>TIGR01587 cas3_core CRISPR-associated helicase Cas3

Probab=80.20  E-value=4.5  Score=31.07  Aligned_cols=48  Identities=15%  Similarity=0.095  Sum_probs=37.0

Q ss_pred             HHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCC-ceeEccccHH
Q 031899           93 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA-GITDIAGGFA  140 (151)
Q Consensus        93 ~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~-~v~~l~GG~~  140 (151)
                      .+..+.....++.+++++|++-..+..++..|++.+.. ++..+.|++.
T Consensus       211 ~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~  259 (358)
T TIGR01587       211 SLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFT  259 (358)
T ss_pred             HHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCC
Confidence            34444444456788999999988899999999998874 6888888863

This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	151
1tq1_A	129	Solution Structure Of At5g66040, A Putative Protein		1e-42
3tp9_A	474	Crystal Structure Of Alicyclobacillus Acidocaldariu		2e-07
2kl3_A	132	Solution Nmr Structure Of The Rhodanese-Like Domain		7e-06
3ilm_A	141	Crystal Structure Of The Alr3790 Protein From Anaba		2e-05
1gn0_A	108	Escherichia Coli Glpe Sulfurtransferase Soaked With		2e-05
3k9r_A	115	X-Ray Structure Of The Rhodanese-Like Domain Of The		2e-05
3hix_A	106	Crystal Structure Of The Rhodanese_3 Like Domain Fr		2e-05
3r2u_A	466	2.1 Angstrom Resolution Crystal Structure Of Metall		4e-05
2jtq_A	85	Rhodanese From E.Coli Length = 85		9e-05
3d1p_A	139	Atomic Resolution Structure Of Uncharacterized Prot		1e-04
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		2e-04
3gk5_A	108	Crystal Structure Of Rhodanese-Related Protein (Tvg		2e-04
2eg4_A	230	Crystal Structure Of Probable Thiosulfate Sulfurtra		3e-04
1qxn_A	137	Solution Structure Of The 30 Kda Polysulfide-Sulfur		4e-04
1gmx_A	108	Escherichia Coli Glpe Sulfurtransferase Length = 10		5e-04
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		6e-04
2hhg_A	139	Structure Of Protein Of Unknown Function Rpa3614, P		9e-04

>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From Arabidosis Thaliana Length = 129

Iteration: 1
 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 92/113 (81%)
Query: 38  VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 97
           VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct: 16  VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQV 75
Query: 98  STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
           S+ F + D IIVGCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct: 76  SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 128

>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius Protein With Beta-Lactamase And Rhodanese Domains Length = 474

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 43  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 102
           P  V   L Q G   LDVR  +E++ GH   A ++P        ++K    + +V     
Sbjct: 378 PDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP--------LSKLAAHIHDVP---- 425
Query: 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
           +   + V C++G RS +AA+ L   G   + +  GG+ AWR  G P E
Sbjct: 426 RDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNXVGGYEAWRGKGFPVE 473

>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From Anabaena Sp Alr3790 Protein. Northeast Structural Genomics Consortium Target Nsr437a Length = 132

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
           LDVR    ++ GH  GA+ +P               V+  S+   K  +I V     +++
Sbjct: 24  LDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 72
Query: 118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
             A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 73  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 105

>pdb|3ILM|A Chain A, Crystal Structure Of The Alr3790 Protein From Anabaena Sp. Northeast Structural Genomics Consortium Target Nsr437h Length = 141

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
           LDVR    ++ GH  GA   P               V+  S+   K  +I V     +++
Sbjct: 21  LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 69
Query: 118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
             A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 70  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 102

>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn Length = 108

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 42  VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 100
           + V  AH+ LQ     L D+R P+ F+ GHA  A ++     +G+ M  N     +  T 
Sbjct: 7   INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTND-TLGAFMRDN-----DFDT- 59
Query: 101 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
                 ++V C  G  S  AA  LL  G+  +  I GGF AW Q   P E
Sbjct: 60  -----PVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW-QRQFPAE 103

>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The Alr3790 Protein From Anabaena Sp. Northeast Structural Genomics Consortium Target Nsr437c. Length = 115

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
           LDVR    ++ GH  GA   P               V+  S+   K  +I V     +++
Sbjct: 26  LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 74
Query: 118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
             A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 75  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 107

>pdb|3HIX|A Chain A, Crystal Structure Of The Rhodanese_3 Like Domain From Anabaena Sp Alr3790 Protein. Northeast Structural Genomics Consortium Target Nsr437i Length = 106

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
           LDVR    ++ GH  GA   P               V+  S+   K  +I V     +++
Sbjct: 17  LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 65
Query: 118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
             A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 66  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 98

>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp. Aureus Col Length = 466

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
           LDVR   E++ GH + A++VP+    G  +  +L F         K+D I V CQSG RS
Sbjct: 391 LDVRNDNEWNNGHLSQAVHVPH----GKLLETDLPF--------NKNDVIYVHCQSGIRS 438
Query: 118 MMAATDLLNAGFAGITDIAGGF 139
            +A   L + G+  I ++  G+
Sbjct: 439 SIAIGILEHKGYHNIINVNEGY 460

>pdb|2JTQ|A Chain A, Rhodanese From E.Coli Length = 85

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 15/85 (17%)
Query: 57  YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE-VSTRF-RKHDEIIVGCQSG 114
           ++DVR PE++   H  GAIN+P            LK V+E ++T    K+D + V C +G
Sbjct: 4   WIDVRVPEQYQQEHVQGAINIP------------LKEVKERIATAVPDKNDTVKVYCNAG 51
Query: 115 KRSMMAATDLLNAGFAGITDIAGGF 139
           ++S  A   L   G+  + + AGG 
Sbjct: 52  RQSGQAKEILSEMGYTHVEN-AGGL 75

>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein From Saccharomyces Cerevisiae Length = 139

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-RFRKHDEIIVGCQSGKR 116
           +DVR P E+S  H   +INVPY     +     L+F +++   +     E+I  C SGKR
Sbjct: 44  VDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCASGKR 103
Query: 117 SMMAATDLLNAGFAGITDIAGGFAAWRQNG 146
              A     + G++  +   G    W  +G
Sbjct: 104 GGEAQKVASSHGYSNTSLYPGSXNDWVSHG 133

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 19/89 (21%)
Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FRKHDEIIVGCQSG 114
           LDVR P E   G   GA+N+P               V+E+  R     K  EII+ CQ G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRXHELPKDKEIIIFCQVG 534
Query: 115 KRSMMAATDLLNAGFAGITDIAGGFAAWR 143
            R  +A   L+N G+    ++ GG+  ++
Sbjct: 535 LRGNVAYRQLVNNGYRA-RNLIGGYRTYK 562

>pdb|3GK5|A Chain A, Crystal Structure Of Rhodanese-Related Protein (Tvg0868615) From Thermoplasma Volcanium, Northeast Structural Genomics Consortium Target Tvr109a Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
           LDVR P E   G    +IN+P      S + +  K +E    R +K+  I   C  G RS
Sbjct: 21  LDVREPFELIFGSIANSINIPI-----SELREKWKILE----RDKKYAVI---CAHGNRS 68
Query: 118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 149
             AA + L+     I D+ GG  +W + G P 
Sbjct: 69  A-AAVEFLSQLGLNIVDVEGGIQSWIEEGYPV 99

>pdb|2EG4|A Chain A, Crystal Structure Of Probable Thiosulfate Sulfurtransferase Length = 230

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 58  LDVRTPEEFSA----------GHATGAINVPY-MYRVGSGMTKNLKFVEEVSTRFRKHDE 106
           LDVR+PEEF            G   G+ N P  ++    G+ + L          +   E
Sbjct: 135 LDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPEGLLERLGL--------QPGQE 186
Query: 107 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151
           + V C SG RS +A   L + G     +  G    W Q GLPTEP
Sbjct: 187 VGVYCHSGARSAVAFFVLRSLGVRA-RNYLGSMHEWLQEGLPTEP 230

>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur Transferase Homodimer From Wolinella Succinogenes Length = 137

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 47  AHELLQAGHR--YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 104
           A++LLQ       +DVR P+E  A       N  +M R   G  + L       +     
Sbjct: 30  AYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSR---GKLEPLL----AKSGLDPE 82
Query: 105 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 149
             ++V C++  R+ +A   L   GF  I +  GG   W + GLP+
Sbjct: 83  KPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPS 127

>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase Length = 108

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 42  VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 100
           + V  AH+ LQ     L D+R P+ F+ GHA  A ++     +G+ M  N     +  T 
Sbjct: 7   INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTND-TLGAFMRDN-----DFDT- 59
Query: 101 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
                 ++V    G  S  AA  LL  G+  +  I GGF AW Q   P E
Sbjct: 60  -----PVMVMXYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW-QRQFPAE 103

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 50  LLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK---HDE 106
           +++ G   +DVR P E   G   G+IN+P               ++E+  R  +     +
Sbjct: 499 IVENGGYLIDVREPNELKQGXIKGSINIP---------------LDELRDRLEEVPVDKD 543
Query: 107 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139
           I + CQ G R  +AA  L   G+  + ++ GGF
Sbjct: 544 IYITCQLGXRGYVAARXLXEKGYK-VKNVDGGF 575

>pdb|2HHG|A Chain A, Structure Of Protein Of Unknown Function Rpa3614, Possible Tyrosine Phosphatase, From Rhodopseudomonas Palustris Cga009 Length = 139

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 101 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
           F++  + +  C  G RS +AA    + G   +  I GGF AWR  G P E
Sbjct: 83  FQEDKKFVFYCAGGLRSALAAKTAQDXGLKPVAHIEGGFGAWRDAGGPIE 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
1tq1_A	129	AT5G66040, senescence-associated family protein; C	5e-49
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	2e-29
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	1e-28
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	1e-24
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	2e-23
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	3e-23
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	3e-22
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	8e-22
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	1e-21
1vee_A	134	Proline-rich protein family; hypothetical protein,	3e-21
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	3e-21
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	1e-05
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	4e-21
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	5e-21
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	2e-20
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	6e-20
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	9e-17
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	8e-12
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	4e-09
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	7e-20
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	8e-20
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	2e-19
2jtq_A	85	Phage shock protein E; solution structure rhodanes	3e-19
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	2e-18
3r2u_A	466	Metallo-beta-lactamase family protein; structural	2e-17
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	2e-16
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	3e-15
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	6e-13
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	5e-12
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	4e-11
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	7e-11
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	7e-10
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	2e-09
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	3e-09
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	4e-09
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	3e-07
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	5e-07
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	6e-06
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	8e-06
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	1e-05
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	2e-05
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	2e-05
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	2e-05
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	3e-05
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	4e-05
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	5e-05
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	1e-04
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	3e-04
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	3e-04
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	4e-04

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score =  152 bits (387), Expect = 5e-49
 Identities = 79/117 (67%), Positives = 93/117 (79%)

Query: 34  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 93
           E   VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F
Sbjct: 12  EESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDF 71

Query: 94  VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
           +E+VS+ F + D IIVGCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct: 72  LEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 128

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score =  102 bits (256), Expect = 2e-29
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
           LDVR    ++ GH  GA+ +P               V+  S+   K  +I V     +++
Sbjct: 17  LDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 65

Query: 118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
             A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 66  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 98

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score =  101 bits (254), Expect = 1e-28
 Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 17/110 (15%)

Query: 47  AHEL---LQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 100
           AH L   L+ G      LDVR    ++ GH  GA+ +P               V+  S+ 
Sbjct: 4   AHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSS 52

Query: 101 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
             K  +I V     +++  A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 53  LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 102

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 91.4 bits (227), Expect = 1e-24
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 47  AHELLQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FR 102
              ++         +DVR P E+S  H   +INVPY     +     L+F +++      
Sbjct: 30  MKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPD 89

Query: 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 149
              E+I  C SGKR   A     + G++  +   G    W  +G   
Sbjct: 90  SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDK 136

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 87.3 bits (217), Expect = 2e-23
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 14/111 (12%)

Query: 41  SVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 99
            + V  AH+ LQ     L D+R P+ F+ GHA  A ++               F+ +   
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLT--------NDTLGAFMRDN-- 55

Query: 100 RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
                  ++V C  G  S  AA  LL  G+  +  I GGF AW++   P E
Sbjct: 56  --DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE 103

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 86.6 bits (215), Expect = 3e-23
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
           +DVR  +E+   H   A  +         +    K  + +S    K  ++++ C++G+R+
Sbjct: 20  VDVRELDEYEELHLPNATLIS--------VNDQEKLADFLS--QHKDKKVLLHCRAGRRA 69

Query: 118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
           + AA  +   G+     + G    + + G    
Sbjct: 70  LDAAKSMHELGYTPYY-LEGNVYDFEKYGFRMV 101

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 83.0 bits (206), Expect = 8e-22
 Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 47  AHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 104
           A +L +    Y  LDVR P E   G    +IN+P            +  + E      + 
Sbjct: 8   AADLYENIKAYTVLDVREPFELIFGSIANSINIP------------ISELREKWKILERD 55

Query: 105 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151
            +  V C  G RS  A   L   G   I D+ GG  +W + G P   
Sbjct: 56  KKYAVICAHGNRSAAAVEFLSQLGLN-IVDVEGGIQSWIEEGYPVVL 101

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 83.5 bits (207), Expect = 1e-21
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 18/119 (15%)

Query: 42  VPVRVAHELLQAGHRY---LDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEV 97
           +    A  L ++G      +D+R P E    G   G+ +         GM   L+F  + 
Sbjct: 24  LTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTR------GM---LEFWIDP 74

Query: 98  STRFRKHD-----EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151
            + + K       + +  C  G RS +AA    + G   +  I GGF AWR  G P E 
Sbjct: 75  QSPYAKPIFQEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEA 133

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 82.7 bits (204), Expect = 3e-21
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 8/120 (6%)

Query: 40  TSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPY-MYRVGSGMTKNLKFVEE 96
           +S   + A+  L      + LD+R   +F    +     +                F+++
Sbjct: 5   SSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKK 64

Query: 97  VSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF---AAWRQNGLPTEP 151
           +S +F   ++  + +  +    S + A  +   GF     I  G      W  + LP   
Sbjct: 65  LSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIE 124

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 87.8 bits (217), Expect = 3e-21
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 12/117 (10%)

Query: 34  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 93
           +        P  V   L Q G   LDVR  +E++ GH   A ++P            L  
Sbjct: 369 DVASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP------------LSK 416

Query: 94  VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
           +        +   + V C++G RS +AA+ L   G   + ++ GG+ AWR  G P E
Sbjct: 417 LAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVE 473

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 11/107 (10%)

Query: 45  RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 104
                  + G   LDVR  + F+  H  G++N+P+             FV          
Sbjct: 277 PERVRAWREGGVVLDVRPADAFAKRHLAGSLNIPWN----------KSFVTWAGWLLPAD 326

Query: 105 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151
             I +       +      L + G   + D     A  R        
Sbjct: 327 RPIHLLAADA-IAPDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVAS 372

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score = 81.1 bits (201), Expect = 4e-21
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 15/110 (13%)

Query: 41  SVPVRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 98
           S+ V    E +   +    +DVRT +E + G   GA  +P M  +   +           
Sbjct: 3   SITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIP-MNSIPDNLNY--------- 52

Query: 99  TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 148
             F  ++   + C++G RS      L   G     ++ GG   +   GL 
Sbjct: 53  --FNDNETYYIICKAGGRSAQVVQYLEQNGVN-AVNVEGGMDEFGDEGLE 99

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 82.4 bits (203), Expect = 5e-21
 Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 23/125 (18%)

Query: 47  AHELLQAG--HRYLDVRTPEEFSAGHATGAINVP----YMYRVGSGMTKNLKFVEEVSTR 100
           A E+L        +DVR   E+         ++     Y+    S  T N  F+ E+  R
Sbjct: 12  AWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDR 71

Query: 101 F-----RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA------------WR 143
                 +    +I  C+SG RS+ AA     AG     ++  GF              WR
Sbjct: 72  IPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWR 131

Query: 144 QNGLP 148
             GLP
Sbjct: 132 AVGLP 136

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 79.2 bits (196), Expect = 2e-20
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 18/106 (16%)

Query: 41  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 100
            V       LL+ G   +DVR  +  S      A  VP               +E++   
Sbjct: 3   KVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVP---------------LEKIQKG 47

Query: 101 FRK--HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 144
                   +++ C+ G  S +AA  L   G+     + GG  A  Q
Sbjct: 48  EHGLPRRPLLLVCEKGLLSQVAALYLEAEGY-EAMSLEGGLQALTQ 92

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 84.0 bits (207), Expect = 6e-20
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 43  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 102
           P  +A  L + G R LD      ++  H  GA  V                +++   R  
Sbjct: 381 PTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVL------------RSQLKQALERLG 428

Query: 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
             +  ++ C S   +  A  ++       +  + GG +AW   GLPTE
Sbjct: 429 TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTE 476

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 75.1 bits (184), Expect = 9e-17
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 17/115 (14%)

Query: 40  TSVPVRVAHEL---LQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFV 94
           + + VR  H++   L A      LDVR  + F+  H   A N+P             +  
Sbjct: 4   SQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS-----------RLE 52

Query: 95  EEVSTRF-RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 148
            E+  R  R+   I V       + +AA  L + G++ +  + GG + WR  G  
Sbjct: 53  LEIHARVPRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGE 107

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 60.9 bits (147), Expect = 8e-12
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 52  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC 111
           +A    LD R  +E+      G I+VP          + +  V E++        +IV C
Sbjct: 144 RAEAVILDARRFDEYQTMSIPGGISVPG--------AELVLRVAELAP--DPRTRVIVNC 193

Query: 112 QSGKRSMMAATDLLNAGFA-GITDIAGGFAAWRQNG 146
               RS++    LLNAG    +  +  G   W   G
Sbjct: 194 AGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAG 229

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 52.8 bits (126), Expect = 4e-09
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 52  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC 111
                 LDVRTPEE+ AGH  G+ + P     G  + +             +   +++  
Sbjct: 280 DRTTYLLDVRTPEEYEAGHLPGSRSTP-----GGQLVQETD-----HVASVRGARLVLVD 329

Query: 112 QSGKRSMMAATDLLNAGF 129
             G R+ M+A+ L   G+
Sbjct: 330 DDGVRANMSASWLAQMGW 347

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 79.0 bits (195), Expect = 7e-20
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 14/95 (14%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ--SGK 115
           +DVR  E +   H   AI++P             K  E+ + R  K   II  C   +  
Sbjct: 37  VDVRDAEAYKECHIPTAISIPGN-----------KINEDTTKRLSKEKVIITYCWGPACN 85

Query: 116 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
            +  AA      GF  + ++ GG   WR+     E
Sbjct: 86  GATKAAAKFAQLGFR-VKELIGGIEYWRKENGEVE 119

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 78.9 bits (195), Expect = 8e-20
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 15/123 (12%)

Query: 34  EAVGVPTSVPVRVAHELLQAGHRY--LDVRTPEEFSAGH---ATGAINVPYMYRVGSGMT 88
            A      +  + A++LLQ       +DVR P+E  A          ++        G  
Sbjct: 17  AAKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSR------GK- 69

Query: 89  KNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 148
             L+ +    +       ++V C++  R+ +A   L   GF  I +  GG   W + GLP
Sbjct: 70  --LEPLLA-KSGLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLP 126

Query: 149 TEP 151
           +  
Sbjct: 127 SLD 129

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 77.4 bits (191), Expect = 2e-19
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 24/114 (21%)

Query: 46  VAHELLQAGHRY--LDVRT-PEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 102
           V  ++  A  +Y  LDVR  P +       GAI +P                ++++TR  
Sbjct: 22  VLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMP---------------AKDLATRIG 66

Query: 103 ---KHDEIIVGCQSGKRSMM--AATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151
                   +V   +G  ++   A   LL+AGF    ++AG    W+   LP E 
Sbjct: 67  ELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEH 119

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 75.7 bits (187), Expect = 3e-19
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 54  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-----KHDEII 108
              ++DVR PE++   H  GAIN+P               ++EV  R       K+D + 
Sbjct: 1   AEHWIDVRVPEQYQQEHVQGAINIP---------------LKEVKERIATAVPDKNDTVK 45

Query: 109 VGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 144
           V C +G++S  A   L   G+  + +  GG      
Sbjct: 46  VYCNAGRQSGQAKEILSEMGYTHVENA-GGLKDIAM 80

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score = 74.8 bits (184), Expect = 2e-18
 Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 13/114 (11%)

Query: 44  VRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPY-----MYRVGSGMTKNLKFVEE 96
           V     LL +G  +  LDVR   E        A+++P             + K   + E+
Sbjct: 5   VTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEAIWEEK 64

Query: 97  VSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG------ITDIAGGFAAWRQ 144
             T+      I V C+ G  S  A   L +   A       + D+ GG  AW  
Sbjct: 65  QGTQEGAAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAA 118

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
           LDVR   E++ GH + A++VP               + E    F K+D I V CQSG RS
Sbjct: 391 LDVRNDNEWNNGHLSQAVHVP------------HGKLLETDLPFNKNDVIYVHCQSGIRS 438

Query: 118 MMAATDLLNAGFAGITDIAGGFAAWRQN 145
            +A   L + G+  I ++  G+   + +
Sbjct: 439 SIAIGILEHKGYHNIINVNEGYKDIQLS 466

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 70.1 bits (171), Expect = 2e-16
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 24/125 (19%)

Query: 43  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMY-----RVGSGMTKN------- 90
            +++   L      ++DVRT  E+   H   AIN+P         VG+            
Sbjct: 6   VIKIEKALKLDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQ 65

Query: 91  --LKFVEEVSTRFRK---------HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 139
               +V                   + +I   + G RS      L + G   +  + GG+
Sbjct: 66  KGFDYVSYKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVN-VYQLEGGY 124

Query: 140 AAWRQ 144
            A+R 
Sbjct: 125 KAYRN 129

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 67.7 bits (165), Expect = 3e-15
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 18/121 (14%)

Query: 40  TSVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 98
           + +       L +  +  + DVR  E    GH  G+++        SG   +   +  + 
Sbjct: 28  SYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYA------SGSFDDK--ISHLV 79

Query: 99  TRFRKHDEIIVGC-QSGKRSMMAATDLL--------NAGFAGITDIAGGFAAWRQNGLPT 149
              +  D ++     S  R    A  L+        + G   I  +  GF  W  +G P 
Sbjct: 80  QNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPV 139

Query: 150 E 150
            
Sbjct: 140 C 140

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 63.8 bits (156), Expect = 6e-13
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 19/110 (17%)

Query: 37  GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE 96
           G   +V       +++ G   +DVR P E   G   G+IN+P               ++E
Sbjct: 486 GFVDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIP---------------LDE 530

Query: 97  VSTRFR---KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 143
           +  R        +I + CQ G R  +AA  L+  G+  + ++ GGF  + 
Sbjct: 531 LRDRLEEVPVDKDIYITCQLGMRGYVAARMLMEKGYK-VKNVDGGFKLYG 579

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 61.5 bits (150), Expect = 5e-12
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 21/102 (20%)

Query: 47  AHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-- 102
             ++         LDVR P E   G   GA+N+P               V+E+  R    
Sbjct: 477 FDQIDNLSEDQLLLDVRNPGELQNGGLEGAVNIP---------------VDELRDRMHEL 521

Query: 103 -KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 143
            K  EII+  Q G R  +A   L+N G+    ++ GG+  ++
Sbjct: 522 PKDKEIIIFSQVGLRGNVAYRQLVNNGYR-ARNLIGGYRTYK 562

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 56.6 bits (136), Expect = 4e-11
 Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 16/99 (16%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 116
           +D R P E+  GH  GA+N+           ++    + +     K   ++  C+ S +R
Sbjct: 48  IDCRYPYEYEGGHIKGAVNLHM-----EEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSER 102

Query: 117 SMMAATDLLNA----------GFAGITDIAGGFAAWRQN 145
                  +              +  +  + GG+  +   
Sbjct: 103 GPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK 141

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 57.0 bits (137), Expect = 7e-11
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 116
           +D R P E+  GH   A+N+P      S + K+      +     K   +I  C+ S +R
Sbjct: 69  VDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLD----KRVILIFHCEFSSER 124

Query: 117 SMMAATDL----------LNAGFAGITDIAGGFAAWRQN 145
                  +           +  +  +  + GG+  +   
Sbjct: 125 GPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ 163

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 53.6 bits (128), Expect = 7e-10
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 58  LDVRTPEEFSAGHATGAINVPY--MYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC-QSG 114
           +DVR   ++  GH     +  Y  + +    + +    + E     R    +I  C  S 
Sbjct: 57  VDVR-GSDYMGGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQADGRGALNVIFHCMLSQ 115

Query: 115 KRSMMAATDLLNA------GFAGITDIAGGFAAWRQNG 146
           +R   AA  LL +          +  + GGF+ W+   
Sbjct: 116 QRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVY 153

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 15/99 (15%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 116
           +D R P E+  GH  GA+N+         +         V    +K   I+  C+ S +R
Sbjct: 82  IDCRYPYEYLGGHIQGALNLY----SQEELFNFFLKKPIVPLDTQKRIIIVFHCEFSSER 137

Query: 117 SMMAATDLLNA----------GFAGITDIAGGFAAWRQN 145
                  L              +  +  + GG+  +   
Sbjct: 138 GPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPE 176

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 51.6 bits (123), Expect = 3e-09
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 18/110 (16%)

Query: 48  HELLQAGHRY-----LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 102
            ELL           +D R   +   G    +IN+P +        K  K + E      
Sbjct: 13  VELLDNPDSLVKAAVIDCR-DSDRDCGFIVNSINMPTISCTEEMYEKLAKTLFE-----E 66

Query: 103 KHDEIIVGC-QSGKRSMMAATDL------LNAGFAGITDIAGGFAAWRQN 145
           K +  +  C QS  R+   A         L      +  + GG+ A+   
Sbjct: 67  KKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHM 116

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 51.5 bits (123), Expect = 4e-09
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 15/99 (15%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 116
           +D R P E+  GH   A+N+P      S + K+            K   +I   + S +R
Sbjct: 49  VDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS----PIAPCSLDKRVILIFHSEFSSER 104

Query: 117 SMMAATDL----------LNAGFAGITDIAGGFAAWRQN 145
                  +           +  +  +  + GG+  +   
Sbjct: 105 GPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ 143

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Length = 271

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 22/122 (18%)

Query: 46  VAHELLQAGHRYLDVRTPEEFS--------AGHATGAINVPYMYRVGSGMTKNLKFVEEV 97
           +   L  A     D R+P+E+          GH  GA+N  +   +       L+   ++
Sbjct: 154 LLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRA--LRIRTDI 211

Query: 98  STRF-----RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAW-RQNGLP 148
           + R          EI+  CQ+  R   +    L A   G   +    G +  W      P
Sbjct: 212 AGRLEELGITPDKEIVTHCQTHHR---SGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTP 268

Query: 149 TE 150
            E
Sbjct: 269 VE 270

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A Length = 230

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 33/137 (24%), Positives = 42/137 (30%), Gaps = 40/137 (29%)

Query: 39  PTSVPVRVAHELL------QAGHRYLDVRTPEEFS----------AGHATGAINVPYMYR 82
            T V  ++  + L            LDVR+PEEF            G   G+ N P    
Sbjct: 110 RTEVVAKLRRDWLLTADEAARHPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLE-- 167

Query: 83  VGSGMTKNLKFVEEVSTRFR-----KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA- 136
                     F+                E+ V C SG R   +A         G+     
Sbjct: 168 ---------LFLSP-EGLLERLGLQPGQEVGVYCHSGAR---SAVAFFVLRSLGV-RARN 213

Query: 137 --GGFAAWRQNGLPTEP 151
             G    W Q GLPTEP
Sbjct: 214 YLGSMHEWLQEGLPTEP 230

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A Length = 318

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 33/148 (22%)

Query: 30  RGNLEAVGVPTSVPVRVAHELLQA--GHRYLDVRTPEEFS----------------AGHA 71
                 V    +       ++L        +DVR+PEE++                AGH 
Sbjct: 166 CTGYPVVQRNDAPIRAFRDDVLAILGAQPLIDVRSPEEYTGKRTHMPDYPEEGALRAGHI 225

Query: 72  TGAINVPYMYRVGSGMTKN--LKFVEEVSTRFR---KHDEIIVGCQSGKRSMMAATDLLN 126
             A+++P+    G    ++   +  EE+   +      D+ +V C+ G+RS  + T  + 
Sbjct: 226 PTAVHIPW----GKAADESGRFRSREELERLYDFINPDDQTVVYCRIGERS--SHTWFVL 279

Query: 127 AGFAGITDIA---GGFAAW-RQNGLPTE 150
               G  D+    G +  W     +P  
Sbjct: 280 THLLGKADVRNYDGSWTEWGNAVRVPIV 307

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2 Length = 280

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 26/126 (20%)

Query: 46  VAHELLQAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMTKNLKFV 94
           V     +   + +D R    F+            GH  GA+NVP+   V  G  K     
Sbjct: 159 VLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKT---T 215

Query: 95  EEVSTRFRKH-----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAW-RQN 145
           +E+   F          IIV C SG   + AA  LL      + ++    G ++ W  + 
Sbjct: 216 DELDAIFFGRGVSYDKPIIVSCGSG---VTAAVVLLALATLDVPNVKLYDGAWSEWGARA 272

Query: 146 GLPTEP 151
            LP EP
Sbjct: 273 DLPVEP 278

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2 Length = 285

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 39/154 (25%)

Query: 30  RGNLEAVGVPTSVPV------RVAHELLQAGHRYLDVRTPEEFS---------------- 67
            G  E      S+            ++ +     +DVR+P+E+                 
Sbjct: 134 PGRYEVPYRDESIRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALR 193

Query: 68  AGHATGAINVPYMYRVGSGMTKNLKF--VEEVSTRFR-----KHDEIIVGCQSGKRSMMA 120
           AGH  GA N+P+       +  +  F   EE+   +      K  +I+V C+  +RS  +
Sbjct: 194 AGHIPGAKNIPW----AKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCRIAERS--S 247

Query: 121 ATDLLNAGFAGITDIA---GGFAAW-RQNGLPTE 150
            +  +     G   +    G +  W    G+P  
Sbjct: 248 HSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIA 281

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 11/122 (9%), Positives = 31/122 (25%), Gaps = 20/122 (16%)

Query: 43  PVRVAHELLQAGHRYL--DVRTPEEFSAGHATGAINVPY-MYRVGSGMTKNLKFVEEVST 99
              +   +       +  D R  +++       +++VP      G   +     + + S 
Sbjct: 19  AKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSK 78

Query: 100 RFRKH----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA-------------GGFAAW 142
              K     + +++         +     L +    +                 GG+  W
Sbjct: 79  DTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENW 138

Query: 143 RQ 144
             
Sbjct: 139 LL 140

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 14/118 (11%), Positives = 37/118 (31%), Gaps = 21/118 (17%)

Query: 48  HELLQAGHRY---LDVRTPEEFSAGHATGAINVPY-MYRVGSGMTKNLKFVEEVSTRFRK 103
           + ++   +     +D R  +++       +++VP      G   +     + + S    K
Sbjct: 28  YTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWK 87

Query: 104 H----DEIIVGCQ-SGKRSMMAAT------DLLNAGFAG------ITDIAGGFAAWRQ 144
                + +++    S  + +   T      D L    +          + GG+  W  
Sbjct: 88  KRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLL 145

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A Length = 423

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 32/132 (24%)

Query: 46  VAHELLQAGHRYLDVRTPEEFS-----------AGHATGAI-------NVPYMYRVGSGM 87
               L +     + +R+  EF             G   GA        +           
Sbjct: 279 ARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDG 338

Query: 88  TKNLKFVEEVSTRFRKH-----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGF 139
           T  ++  ++++  ++        ++   C +G R   A+   + A   G  +++   GG+
Sbjct: 339 T--MRSADDITAMWKAWNIKPEQQVSFYCGTGWR---ASETFMYARAMGWKNVSVYDGGW 393

Query: 140 AAW-RQNGLPTE 150
             W      P  
Sbjct: 394 YEWSSDPKNPVA 405

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A Length = 153

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 18/115 (15%)

Query: 48  HELLQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV------- 97
             LL++G      +D R   E++  H   AIN+     +   + ++   + E+       
Sbjct: 12  VALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKH 71

Query: 98  STRFRKHDEIIVGCQSGKRS-----MMAATDLLNAGFAGITDI---AGGFAAWRQ 144
                   +++V  QS +           T LL         +   AGGFA + +
Sbjct: 72  KVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSR 126

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Length = 277

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 39/123 (31%)

Query: 58  LDVRTPEEFS----------------AGHATGAINVPYMYRVGSGMTKN--LKFVEEVST 99
           +DVR+P+EFS                 GH  GAINVP+         ++   K  EE++ 
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPW----SRAANEDGTFKSDEELAK 216

Query: 100 RFRKH-----DEIIVGCQSGKRS---MMAATDLLNAGFAGITDIA---GGFAAW-RQNGL 147
            +         E I  C+ G+RS        +LL     G  ++    G +  +    G 
Sbjct: 217 LYADAGLDNSKETIAYCRIGERSSHTWFVLRELL-----GHQNVKNYDGSWTEYGSLVGA 271

Query: 148 PTE 150
           P E
Sbjct: 272 PIE 274

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A Length = 296

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 25/114 (21%)

Query: 58  LDVRTPEEFS------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH- 104
           +D R    +             +GH  G++N+P+M  +        K  EE+   F    
Sbjct: 179 VDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTE--DGFEKSPEELRAMFEAKK 236

Query: 105 ----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAWRQNGLPTEP 151
                 +I  C+ G   + A    L A   G  D+A   G +  W     P   
Sbjct: 237 VDLTKPLIATCRKG---VTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETW 287

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1 Length = 154

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 21/127 (16%)

Query: 39  PTSVPVRVAHELLQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE 95
             S  V   +E L+ G+     +D R  E + + H   AINV     +   + K    V 
Sbjct: 15  AISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVR 74

Query: 96  EV------STRFRK---------HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---G 137
            +        RF +         +DE                 LL              G
Sbjct: 75  ALFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEG 134

Query: 138 GFAAWRQ 144
           GF+ ++ 
Sbjct: 135 GFSKFQA 141

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens} Length = 302

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 24/125 (19%)

Query: 46  VAHELLQAGHRYLDVRTPEEF-----------SAGHATGAINVPYMYRVGSGMTKNLKFV 94
           +   L     + +D R    F             GH  G +N+P+   +        K  
Sbjct: 182 IKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQ--EGLEKSP 239

Query: 95  EEVSTRFRKH-----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAWRQNG 146
           EE+   F++        ++  C SG   + A    L A   G  D+    G +  W    
Sbjct: 240 EEIRHLFQEKKVDLSKPLVATCGSG---VTACHVALGAYLCGKPDVPIYDGSWVEWYMRA 296

Query: 147 LPTEP 151
            P + 
Sbjct: 297 RPEDV 301

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens} Length = 142

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 17/104 (16%)

Query: 58  LDVRTPEEFSAGHATGAINVPYM-------YRVGSGMTKNLKFVEEVSTRFRKH--DEII 108
           +D R   E++  H  GA+++           + G     +L    E    F++    EII
Sbjct: 28  IDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRIFSKEII 87

Query: 109 VGCQSGKRSMMAATD-----LLNAGFAGITDIA---GGFAAWRQ 144
           V  ++               +L +      +     GG ++++Q
Sbjct: 88  VYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSSFKQ 131

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens} Length = 158

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 17/104 (16%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRV-------GSGMTKNLKFVEEVSTRFRKH--DEII 108
           +D R   E++  H  GA+++    ++       G     +L    E    F++    EII
Sbjct: 38  IDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRIFSKEII 97

Query: 109 VGCQSGK--RSMMAATD---LLNAGFAGITDIA---GGFAAWRQ 144
           V  ++      +M +     +L +      +     GG ++++Q
Sbjct: 98  VYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSSFKQ 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.97
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.97
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.97
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.97
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.97
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.96
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.96
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.96
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.96
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.96
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.96
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.96
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.96
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.96
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.96
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.96
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.95
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.95
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.95
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.95
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.95
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.94
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.94
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.94
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.94
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.93
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.93
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.93
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.93
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.92
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.92
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.92
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.92
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.92
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.92
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.92
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.92
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.91
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.91
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.91
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.9
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.9
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.9
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.9
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.9
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.89
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.89
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.89
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.89
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.89
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.89
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.89
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.87
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.86
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.85
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.85
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.85
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.83
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.82
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.81
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.8
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.8
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.79
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.55
2f46_A	156	Hypothetical protein; structural genomics, joint c	98.38
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	95.91
2img_A	151	Dual specificity protein phosphatase 23; DUSP23, V	95.3
1xri_A	151	AT1G05000; structural genomics, protein structure	95.06
1v8c_A	168	MOAD related protein; riken structural genomics/pr	94.57
1fpz_A	212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	94.04
2nt2_A	145	Protein phosphatase slingshot homolog 2; alpha/bet	93.88
1ywf_A	296	Phosphotyrosine protein phosphatase PTPB; four str	93.76
2hcm_A	164	Dual specificity protein phosphatase; structural g	93.53
1yz4_A	160	DUSP15, dual specificity phosphatase-like 15 isofo	93.16
2r0b_A	154	Serine/threonine/tyrosine-interacting protein; str	92.92
3ezz_A	144	Dual specificity protein phosphatase 4; alpha/beta	92.92
1wrm_A	165	Dual specificity phosphatase 22; DSP, JNK, hydrola	92.72
2jgn_A	185	DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp	92.38
3rgo_A	157	Protein-tyrosine phosphatase mitochondrial 1; phos	92.03
2esb_A	188	Dual specificity protein phosphatase 18; alpha/bet	91.97
2wgp_A	190	Dual specificity protein phosphatase 14; MKP6, DUS	91.59
3s4o_A	167	Protein tyrosine phosphatase-like protein; structu	90.5
1zzw_A	149	Dual specificity protein phosphatase 10; MKP, PTP,	90.49
3s4e_A	144	Dual specificity protein phosphatase 19; PTP, prot	90.27
3rz2_A	189	Protein tyrosine phosphatase type IVA 1; tyrosine	90.09
2g6z_A	211	Dual specificity protein phosphatase 5; alpha/beta	89.73
3f81_A	183	Dual specificity protein phosphatase 3; hydrolase,	89.64
2rb4_A	175	ATP-dependent RNA helicase DDX25; rossmann fold, s	88.26
1t5i_A	172	C_terminal domain of A probable ATP-dependent RNA	87.68
1fuk_A	165	Eukaryotic initiation factor 4A; helicase, DEAD-bo	87.21
2y96_A	219	Dual specificity phosphatase DUPD1; hydrolase; 2.3	87.16
2e0t_A	151	Dual specificity phosphatase 26; conserved hypothe	87.09
2hjv_A	163	ATP-dependent RNA helicase DBPA; parallel alpha-be	86.82
2pq5_A	205	Dual specificity protein phosphatase 13; hydrolase	86.71
3hh1_A	117	Tetrapyrrole methylase family protein; chlorobium	86.2
2q05_A	195	Late protein H1, dual specificity protein phosphat	85.45
3emu_A	161	Leucine rich repeat and phosphatase domain contain	85.14
3kwp_A	296	Predicted methyltransferase; putative methyltransf	84.57
1jzt_A	246	Hypothetical 27.5 kDa protein in SPX19-GCR2 inter	84.4
2i4i_A	417	ATP-dependent RNA helicase DDX3X; DEAD, structural	83.98
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	82.85
3cm3_A	176	Late protein H1, dual specificity protein phosphat	82.59
2p6n_A	191	ATP-dependent RNA helicase DDX41; DEAD, structural	82.44
3d3k_A	259	Enhancer of mRNA-decapping protein 3; HEDC3, phosp	82.42
3d3j_A	306	Enhancer of mRNA-decapping protein 3; HEDC3, phosp	81.97
3rss_A	502	Putative uncharacterized protein; unknown function	81.45
2o8n_A	265	APOA-I binding protein; rossmann fold, protein bin	81.14
2v1x_A	591	ATP-dependent DNA helicase Q1; DNA strand annealin	80.86
3eaq_A	212	Heat resistant RNA dependent ATPase; DEAD box RNA	80.26

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.97  E-value=6.6e-32  Score=172.56  Aligned_cols=99  Identities=25%  Similarity=0.409  Sum_probs=87.6

Q ss_pred             cccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhH
Q 031899           40 TSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  117 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~--~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a  117 (151)
                      +.|+++++++++.++  ++|||||++.||..||||||+|+|+.            .+......++++++||+||.+|.||
T Consensus         2 k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~ivv~C~~G~rS   69 (103)
T 3iwh_A            2 KSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMD------------TIPDNLNSFNKNEIYYIVCAGGVRS   69 (103)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGG------------GGGGCGGGCCTTSEEEEECSSSSHH
T ss_pred             CCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCccc------------chhhhhhhhcCCCeEEEECCCCHHH
Confidence            468999999877543  89999999999999999999999994            3445556788999999999999999


Q ss_pred             HHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      ..++..|++.||+++ .|.||+.+|.++|+||++
T Consensus        70 ~~aa~~L~~~G~~~~-~l~GG~~~W~~~g~pves  102 (103)
T 3iwh_A           70 AKVVEYLEANGIDAV-NVEGGMHAWGDEGLEIKS  102 (103)
T ss_dssp             HHHHHHHHTTTCEEE-EETTHHHHHCSSSCBCCC
T ss_pred             HHHHHHHHHcCCCEE-EecChHHHHHHCCCccee
Confidence            999999999999655 689999999999999985

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.97  E-value=1.5e-31  Score=177.45  Aligned_cols=115  Identities=68%  Similarity=1.123  Sum_probs=102.2

Q ss_pred             CCccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChh
Q 031899           37 GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  116 (151)
Q Consensus        37 ~~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~  116 (151)
                      .....|+++++.++++++++|||||++.||..||||||+|+|+..+...+.+.+.++++.....++++++||+||.+|.|
T Consensus        15 ~~~~~is~~e~~~~l~~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~G~r   94 (129)
T 1tq1_A           15 RVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGGR   94 (129)
T ss_dssp             CCCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCSH
T ss_pred             CCCcccCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCCCcH
Confidence            44568999999998887789999999999999999999999997665556666667777777778899999999999999


Q ss_pred             HHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          117 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      |..++..|++.||+||++|+||+.+|..+|+|+++
T Consensus        95 s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  129 (129)
T 1tq1_A           95 SIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA  129 (129)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC-
T ss_pred             HHHHHHHHHHcCCCCeEEeCCcHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999974

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.97  E-value=9.6e-31  Score=166.36  Aligned_cols=97  Identities=24%  Similarity=0.389  Sum_probs=87.1

Q ss_pred             cccCHHHHHHHHh--CCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhH
Q 031899           40 TSVPVRVAHELLQ--AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  117 (151)
Q Consensus        40 ~~i~~~~~~~~~~--~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a  117 (151)
                      +.|+++++.++++  ++++|||||++.||..||||||+|+|+.            .+......++++++||+||.+|.||
T Consensus         2 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~ivvyC~~g~rs   69 (100)
T 3foj_A            2 ESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMN------------SIPDNLNYFNDNETYYIICKAGGRS   69 (100)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGG------------GGGGCGGGSCTTSEEEEECSSSHHH
T ss_pred             CccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHH------------HHHHHHHhCCCCCcEEEEcCCCchH
Confidence            4589999999884  3599999999999999999999999994            3444556678899999999999999


Q ss_pred             HHHHHHHHHCCCCceeEccccHHHHHhCCCCC
Q 031899          118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv  149 (151)
                      ..+++.|++.|| +|++|+||+.+|.++|+||
T Consensus        70 ~~a~~~L~~~G~-~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           70 AQVVQYLEQNGV-NAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             HHHHHHHHTTTC-EEEEETTHHHHHCSSSCBC
T ss_pred             HHHHHHHHHCCC-CEEEecccHHHHHHcCCCC
Confidence            999999999999 9999999999999999996

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.97  E-value=3.9e-30  Score=165.74  Aligned_cols=99  Identities=29%  Similarity=0.433  Sum_probs=91.4

Q ss_pred             ccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHH
Q 031899           39 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  118 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~  118 (151)
                      ...|+++++.+++++ ++|||||++.||..||||||+|+|+            ..+......++++++||+||.+|.||.
T Consensus         3 ~~~is~~el~~~l~~-~~iiDvR~~~e~~~ghIpgA~~ip~------------~~l~~~~~~l~~~~~ivvyC~~G~rs~   69 (108)
T 3gk5_A            3 YRSINAADLYENIKA-YTVLDVREPFELIFGSIANSINIPI------------SELREKWKILERDKKYAVICAHGNRSA   69 (108)
T ss_dssp             CCEECHHHHHHTTTT-CEEEECSCHHHHTTCBCTTCEECCH------------HHHHHHGGGSCTTSCEEEECSSSHHHH
T ss_pred             ccEeCHHHHHHHHcC-CEEEECCCHHHHhcCcCCCCEEcCH------------HHHHHHHHhCCCCCeEEEEcCCCcHHH
Confidence            356899999998877 9999999999999999999999999            566777778899999999999999999


Q ss_pred             HHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          119 MAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       119 ~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      .+++.|++.|| +|++|+||+.+|.++|+|+++
T Consensus        70 ~aa~~L~~~G~-~v~~l~GG~~~W~~~~~~~~~  101 (108)
T 3gk5_A           70 AAVEFLSQLGL-NIVDVEGGIQSWIEEGYPVVL  101 (108)
T ss_dssp             HHHHHHHTTTC-CEEEETTHHHHHHHTTCCCBC
T ss_pred             HHHHHHHHcCC-CEEEEcCcHHHHHHcCCCCCC
Confidence            99999999999 999999999999999999864

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.96  E-value=1.4e-29  Score=187.58  Aligned_cols=146  Identities=21%  Similarity=0.339  Sum_probs=111.0

Q ss_pred             cccccCccccccccccccccCccccCc--cc--------ccCCccccCHHHHHHHHh-CCCEEEecCChhhH--------
Q 031899            6 DQQRCDNIGFISSKILSFCPKASLRGN--LE--------AVGVPTSVPVRVAHELLQ-AGHRYLDVRTPEEF--------   66 (151)
Q Consensus         6 ~~~~~~~v~~l~gg~~~w~~~~~~~~~--~~--------~~~~~~~i~~~~~~~~~~-~~~~iiDvR~~~e~--------   66 (151)
                      ...+|++|++|+||+.+|.........  ..        .......++++++.++++ .+++|||||++.||        
T Consensus       108 ~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~  187 (280)
T 1urh_A          108 RTFGVEKVSILGGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPR  187 (280)
T ss_dssp             HHTTCSCEEEETTHHHHHHHTTCCCBBSCCCCCCCCCCCCCCGGGBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC--
T ss_pred             HHcCCCCEEEecCCHHHHHHCCCcccCCCCCCCCCccccccCcccEEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCC
Confidence            457899999999999999875432111  10        001223589999988876 45899999999999        


Q ss_pred             ---hcCCCCCceeeccccccCCCCCCCHHHHHHHHh--ccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHH
Q 031899           67 ---SAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA  141 (151)
Q Consensus        67 ---~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~  141 (151)
                         ..||||||+|+|+..+...+.+.+.+.+...+.  .++++++||+||++|.||..++..|+.+||+||++|+||+.+
T Consensus       188 ~~~~~ghIpgA~nip~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~  267 (280)
T 1urh_A          188 PGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE  267 (280)
T ss_dssp             --CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred             CCCcCccCCCceEeeHHHhhcCCccCCHHHHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence               689999999999987776666777777777666  367899999999999999999999999999999999999999


Q ss_pred             HHh-CCCCCCC
Q 031899          142 WRQ-NGLPTEP  151 (151)
Q Consensus       142 W~~-~g~pv~~  151 (151)
                      |.. .++|+++
T Consensus       268 W~~~~~~Pv~~  278 (280)
T 1urh_A          268 WGARADLPVEP  278 (280)
T ss_dssp             -----------
T ss_pred             HhcCCCCCcee
Confidence            988 5999874

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.96  E-value=1.7e-29  Score=162.63  Aligned_cols=99  Identities=30%  Similarity=0.500  Sum_probs=89.4

Q ss_pred             ccccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhH
Q 031899           39 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  117 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a  117 (151)
                      ...++++++.+++++ +++|||||++.||..||||||+|+|+            ..+......++++++||+||.+|.||
T Consensus         4 ~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~------------~~l~~~~~~l~~~~~ivvyc~~g~rs   71 (108)
T 1gmx_A            4 FECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTN------------DTLGAFMRDNDFDTPVMVMCYHGNSS   71 (108)
T ss_dssp             CEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCH------------HHHHHHHHHSCTTSCEEEECSSSSHH
T ss_pred             ccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCH------------HHHHHHHHhcCCCCCEEEEcCCCchH
Confidence            356899999988875 48999999999999999999999999            45555666688999999999999999


Q ss_pred             HHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899          118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      ..+++.|++.||++|++|+||+.+|.++ +|++
T Consensus        72 ~~a~~~L~~~G~~~v~~l~GG~~~W~~~-~p~~  103 (108)
T 1gmx_A           72 KGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE  103 (108)
T ss_dssp             HHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGG
T ss_pred             HHHHHHHHHcCCceEEEecCCHHHHHHh-CCcc
Confidence            9999999999999999999999999998 8875

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.96  E-value=3.3e-29  Score=184.68  Aligned_cols=146  Identities=16%  Similarity=0.262  Sum_probs=114.9

Q ss_pred             cccccCccccccccccccccCccccCc--cc--------ccCCccccCHHHHHHHHhCC-CEEEecCChhhHh-------
Q 031899            6 DQQRCDNIGFISSKILSFCPKASLRGN--LE--------AVGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFS-------   67 (151)
Q Consensus         6 ~~~~~~~v~~l~gg~~~w~~~~~~~~~--~~--------~~~~~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~-------   67 (151)
                      ...+|++|.+|+||+.+|.........  ..        .......++++++.++++++ ++|||||++.||.       
T Consensus       103 ~~~G~~~v~~L~GG~~~w~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~  182 (271)
T 1e0c_A          103 DVIGQQRYHYLNGGLTAWLAEDRPLSRELPAPAGGPVALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAA  182 (271)
T ss_dssp             HHTTCCCEEEETTHHHHHHHTTCCCBCCCCCCCCSCCCCCCCSTTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSS
T ss_pred             HHcCCCCeEEecCCHHHHHHcCCCccCCCCCCCCCCccccCCccccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCC
Confidence            457899999999999999775432111  10        01122457999998888654 8899999999999       


Q ss_pred             -cCCCCCceeeccccccCC-CCCCCHHHHHHHHh--ccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHH
Q 031899           68 -AGHATGAINVPYMYRVGS-GMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR  143 (151)
Q Consensus        68 -~ghIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~  143 (151)
                       .||||||+|+|+..+... +.+..++.+...+.  .++++++||+||++|.||..++..|+.+||++|++|+||+.+|.
T Consensus       183 ~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~  262 (271)
T 1e0c_A          183 KGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWG  262 (271)
T ss_dssp             SCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHT
T ss_pred             cCCcCCCceeccHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHHHh
Confidence             999999999999866532 22222245555555  47889999999999999999999999999999999999999999


Q ss_pred             hC-CCCCCC
Q 031899          144 QN-GLPTEP  151 (151)
Q Consensus       144 ~~-g~pv~~  151 (151)
                      ++ |+|+++
T Consensus       263 ~~~~~pv~~  271 (271)
T 1e0c_A          263 NHPDTPVEL  271 (271)
T ss_dssp             TCTTCCCBC
T ss_pred             cCCCCCCcC
Confidence            98 999975

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.96  E-value=6.9e-29  Score=187.02  Aligned_cols=146  Identities=19%  Similarity=0.274  Sum_probs=120.4

Q ss_pred             ccccccCccccccccccccccCccccCc--c--c-----c---cCCccccCHHHHHHHHhCCCEEEecCChhhHhc----
Q 031899            5 GDQQRCDNIGFISSKILSFCPKASLRGN--L--E-----A---VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSA----   68 (151)
Q Consensus         5 ~~~~~~~~v~~l~gg~~~w~~~~~~~~~--~--~-----~---~~~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~----   68 (151)
                      ....+|++|++|+||+..|.........  .  .     .   ......++.+++.++++++ +|||||++.||..    
T Consensus       132 L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~l~~~-~liDvR~~~e~~~~~~~  210 (318)
T 3hzu_A          132 FTLFGHADVRLLNGGRDLWLAERRETTLDVPTKTCTGYPVVQRNDAPIRAFRDDVLAILGAQ-PLIDVRSPEEYTGKRTH  210 (318)
T ss_dssp             HHHTTCSCEEEETTHHHHHHHTTCCCBCCCCCCCCCCCCCCCCCCTTTBCCHHHHHHHTTTS-CEEECSCHHHHHTSCSS
T ss_pred             HHHcCCCceEEccCCHHHHhhcCCCcccCCCCCCCCccccccCCCccccccHHHHHHhhcCC-eEEecCCHHHhcccccC
Confidence            3457899999999999999875432111  1  0     0   0112357899999988777 8999999999998    


Q ss_pred             ------------CCCCCceeecccccc-CCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHH-CCCCceeE
Q 031899           69 ------------GHATGAINVPYMYRV-GSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-AGFAGITD  134 (151)
Q Consensus        69 ------------ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~-~G~~~v~~  134 (151)
                                  ||||||+|+|+..+. .++.+.+.+.+...+..++++++||+||++|.||..++..|++ +||++|++
T Consensus       211 ~~~~~~~~~~~~GhIpGA~niP~~~~~~~~g~~~~~~~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~  290 (318)
T 3hzu_A          211 MPDYPEEGALRAGHIPTAVHIPWGKAADESGRFRSREELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRN  290 (318)
T ss_dssp             CTTSCSCSCSSCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEE
T ss_pred             ccccccccCCcCcCCCCeeecCHHHhcCCCCcCCCHHHHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeE
Confidence                        999999999997765 3567778788888877788999999999999999999999997 99999999


Q ss_pred             ccccHHHHHh-CCCCCCC
Q 031899          135 IAGGFAAWRQ-NGLPTEP  151 (151)
Q Consensus       135 l~GG~~~W~~-~g~pv~~  151 (151)
                      |+|||.+|.. .|+|+++
T Consensus       291 ~~GG~~~W~~~~g~Pv~~  308 (318)
T 3hzu_A          291 YDGSWTEWGNAVRVPIVA  308 (318)
T ss_dssp             CTTHHHHHTTSTTCCCBC
T ss_pred             eCCcHHHHhcCCCCCccc
Confidence            9999999995 7999874

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-28  Score=165.49  Aligned_cols=113  Identities=23%  Similarity=0.301  Sum_probs=95.3

Q ss_pred             CccccCHHHHHHHHh---CCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHh--ccCCCCeEEEEeC
Q 031899           38 VPTSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVGCQ  112 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~---~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~~c~  112 (151)
                      ....|+++++.++++   ++++|||||++.||..||||||+|+|+..+. .....+.+.+...+.  .++++++||+||.
T Consensus        21 ~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ivvyC~   99 (139)
T 3d1p_A           21 NIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHP-DAFALDPLEFEKQIGIPKPDSAKELIFYCA   99 (139)
T ss_dssp             CCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTCT-TGGGSCHHHHHHHHSSCCCCTTSEEEEECS
T ss_pred             CcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHhh-hhccCCHHHHHHHHhccCCCCCCeEEEECC
Confidence            456899999999886   4589999999999999999999999997552 233344445555544  3578899999999


Q ss_pred             CChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          113 SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       113 ~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      +|.||..++..|++.||++|++|+||+.+|..+|+|+.+
T Consensus       100 ~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A          100 SGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             SSHHHHHHHHHHHTTTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             CCchHHHHHHHHHHcCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            999999999999999999999999999999999999864

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.96  E-value=4.3e-29  Score=186.34  Aligned_cols=145  Identities=14%  Similarity=0.216  Sum_probs=117.7

Q ss_pred             cccccCccccccccccccccCccccCcc--c--------ccCCccccCHHHHHHHHh-CCCEEEecCChhhH--------
Q 031899            6 DQQRCDNIGFISSKILSFCPKASLRGNL--E--------AVGVPTSVPVRVAHELLQ-AGHRYLDVRTPEEF--------   66 (151)
Q Consensus         6 ~~~~~~~v~~l~gg~~~w~~~~~~~~~~--~--------~~~~~~~i~~~~~~~~~~-~~~~iiDvR~~~e~--------   66 (151)
                      ...+|++|.+|+||+.+|..........  .        .......++++++.++++ .+++|||||++.||        
T Consensus       116 ~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~  195 (296)
T 1rhs_A          116 RVFGHRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPD  195 (296)
T ss_dssp             HHTTCCCEEEETTHHHHHHHTTCCCBCSCCCCCCCCCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSS
T ss_pred             HHcCCCcEEEcCCCHHHHHHcCCccccCCCCCCCCCcccCCCcceEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcc
Confidence            4578999999999999997754321111  0        001124789999988775 45899999999999        


Q ss_pred             ----hcCCCCCceeeccccccC-CCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899           67 ----SAGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF  139 (151)
Q Consensus        67 ----~~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~  139 (151)
                          ..||||||+|+|+..+.. ++.+.+.+.+...+..  ++++++||+||.+|.||..++..|+.+||++|++|+||+
T Consensus       196 ~~~~~~ghIpgA~nip~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~  275 (296)
T 1rhs_A          196 AVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSW  275 (296)
T ss_dssp             SSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHH
T ss_pred             cCCCcCccCCCCEeecHHHhcCCCCcCCCHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcH
Confidence                889999999999987764 4566677777776653  688999999999999999999999999999999999999


Q ss_pred             HHHHh-CCCCCC
Q 031899          140 AAWRQ-NGLPTE  150 (151)
Q Consensus       140 ~~W~~-~g~pv~  150 (151)
                      .+|.. .++|++
T Consensus       276 ~~W~~~~~~pv~  287 (296)
T 1rhs_A          276 FEWFHRAPPETW  287 (296)
T ss_dssp             HHHHHHSCGGGE
T ss_pred             HHHhcCCCCCcc
Confidence            99998 799986

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.96  E-value=2.8e-29  Score=161.22  Aligned_cols=94  Identities=32%  Similarity=0.554  Sum_probs=77.9

Q ss_pred             HHHHHHh---CCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHH
Q 031899           46 VAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAAT  122 (151)
Q Consensus        46 ~~~~~~~---~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~  122 (151)
                      +++++++   ++++|||||++.||..||||||+|+|+.           ++.......++++++||+||.+|.+|..+++
T Consensus         2 el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~-----------~l~~~~~~~l~~~~~ivvyc~~g~rs~~a~~   70 (106)
T 3hix_A            2 VLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQTSQAVN   70 (106)
T ss_dssp             -----------CCEEEECSCHHHHHTCEETTCEECCGG-----------GHHHHHHHHSCTTSCEEEECSSHHHHHHHHH
T ss_pred             hHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHH-----------HHHHHHHhcCCCCCeEEEEECCCChHHHHHH
Confidence            3455554   3489999999999999999999999994           3333444668889999999999999999999


Q ss_pred             HHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899          123 DLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       123 ~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      .|+..||+||++|+||+.+|.++|+|++
T Consensus        71 ~L~~~G~~~v~~l~GG~~~W~~~g~~~~   98 (106)
T 3hix_A           71 LLRSAGFEHVSELKGGLAAWKAIGGPTE   98 (106)
T ss_dssp             HHHHTTCSCEEECTTHHHHHHHTTCCEE
T ss_pred             HHHHcCCcCEEEecCCHHHHHHCCCCCC
Confidence            9999999999999999999999999985

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.96  E-value=5.5e-29  Score=167.43  Aligned_cols=98  Identities=31%  Similarity=0.514  Sum_probs=87.0

Q ss_pred             cCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHH
Q 031899           42 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  118 (151)
Q Consensus        42 i~~~~~~~~~~~---~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~  118 (151)
                      |+++++.++++.   +++|||||++.||..||||||+|+|+.           .+.......++++++||+||.+|.||.
T Consensus         2 Is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~-----------~l~~~~~~~l~~~~~ivvyC~~g~rs~   70 (141)
T 3ilm_A            2 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQTS   70 (141)
T ss_dssp             CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGG-----------GHHHHHHTTSCTTSEEEEECSSHHHHH
T ss_pred             CCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHH-----------HHHHHHHhcCCCCCeEEEEECCChHHH
Confidence            688999888862   489999999999999999999999994           233333456889999999999999999


Q ss_pred             HHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899          119 MAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       119 ~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      .+++.|+..||++|++|+||+.+|.++|+|++
T Consensus        71 ~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  102 (141)
T 3ilm_A           71 QAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE  102 (141)
T ss_dssp             HHHHHHHHTTCCSEEECTTHHHHHHHTTCCEE
T ss_pred             HHHHHHHHcCCCCEEEecCHHHHHHHCCCCcc
Confidence            99999999999999999999999999999985

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.96  E-value=1.5e-28  Score=182.28  Aligned_cols=146  Identities=19%  Similarity=0.304  Sum_probs=118.8

Q ss_pred             cccccCccccccccccccccCccccC--ccc---------ccCCccccCHHHHHHHHh----CCCEEEecCChhhHh---
Q 031899            6 DQQRCDNIGFISSKILSFCPKASLRG--NLE---------AVGVPTSVPVRVAHELLQ----AGHRYLDVRTPEEFS---   67 (151)
Q Consensus         6 ~~~~~~~v~~l~gg~~~w~~~~~~~~--~~~---------~~~~~~~i~~~~~~~~~~----~~~~iiDvR~~~e~~---   67 (151)
                      ...+|++|.+|.||+..|........  ...         .......++++++.++++    .+..|||||++.||.   
T Consensus       101 ~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~  180 (285)
T 1uar_A          101 KYNGHKDVRLMNGGRQKWVEEGRPLTTEVPSYPPGRYEVPYRDESIRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGEL  180 (285)
T ss_dssp             HHTTCSCEEEETTHHHHHHHHTCCCBCCCCCCCCCCCCCCCCCGGGEECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC
T ss_pred             HHcCCCCeEEecCCHHHHHHCCCcccCCCCcccCCCcccccCCcceEEcHHHHHHHHhhcccCCCcEEEcCCccceeeec
Confidence            45789999999999999976432111  111         001123589999998884    556799999999997   


Q ss_pred             -------------cCCCCCceeeccccccC-CCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHH-HCCCC
Q 031899           68 -------------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NAGFA  130 (151)
Q Consensus        68 -------------~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~-~~G~~  130 (151)
                                   .||||||+|+|+..+.. ++.+.+.+.+...+..  ++++++||+||++|.||..+++.|+ .+||+
T Consensus       181 ~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~  260 (285)
T 1uar_A          181 THMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYP  260 (285)
T ss_dssp             --------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCS
T ss_pred             cccccccccccccCCcCCCccccCHHHhcCCCCcCCCHHHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCC
Confidence                         89999999999987653 4567778888887776  7889999999999999999999999 99999


Q ss_pred             ceeEccccHHHHH-hCCCCCCC
Q 031899          131 GITDIAGGFAAWR-QNGLPTEP  151 (151)
Q Consensus       131 ~v~~l~GG~~~W~-~~g~pv~~  151 (151)
                      +|++|+||+.+|. .+|+|+++
T Consensus       261 ~v~~l~GG~~~W~~~~g~pv~~  282 (285)
T 1uar_A          261 HVKNYDGSWTEWGNLVGVPIAK  282 (285)
T ss_dssp             CEEEESSHHHHHTTSTTCCCBC
T ss_pred             CcceeCchHHHHhcCCCCCccc
Confidence            9999999999998 78999874

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=184.74  Aligned_cols=145  Identities=14%  Similarity=0.238  Sum_probs=118.2

Q ss_pred             ccccccCccccccccccccccCccccCc--c--c------ccCCccccCHHHHHHHHh-CCCEEEecCChhhH-------
Q 031899            5 GDQQRCDNIGFISSKILSFCPKASLRGN--L--E------AVGVPTSVPVRVAHELLQ-AGHRYLDVRTPEEF-------   66 (151)
Q Consensus         5 ~~~~~~~~v~~l~gg~~~w~~~~~~~~~--~--~------~~~~~~~i~~~~~~~~~~-~~~~iiDvR~~~e~-------   66 (151)
                      ....+|++|++|+||+.+|.........  .  .      .......++.+++.++++ .+++|||||++.||       
T Consensus       130 L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p  209 (302)
T 3olh_A          130 FRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEP  209 (302)
T ss_dssp             HHHTTCCCEEEETTHHHHHHHSCCC-CCSCCCCCCCCCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCS
T ss_pred             HHHcCCCcEEECCCCHHHHHHcCCCcccCCCCcCcCccccccCccceecHHHHHHhhcCCCcEEEecCCHHHccccccCC
Confidence            3457899999999999999875432111  1  0      011223688999987775 56899999999999       


Q ss_pred             ----hcCCCCCceeeccccccC-CCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899           67 ----SAGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF  139 (151)
Q Consensus        67 ----~~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~  139 (151)
                          ..||||||+|+|+..+.. .+.+.+.+.+...+..  ++++++||+||++|.||..++..|+.+||++|++|+|||
T Consensus       210 ~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~  289 (302)
T 3olh_A          210 RDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSW  289 (302)
T ss_dssp             STTCCCCCCTTCEECCGGGGBCSSSCBCCHHHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHH
T ss_pred             CcCCcCccCCCceecCHHHhcCCCCccCCHHHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcH
Confidence                799999999999987764 4667788888877764  678999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCC
Q 031899          140 AAWRQNGLPT  149 (151)
Q Consensus       140 ~~W~~~g~pv  149 (151)
                      .+|..+++|.
T Consensus       290 ~~W~~~~~P~  299 (302)
T 3olh_A          290 VEWYMRARPE  299 (302)
T ss_dssp             HHHHHHHCCC
T ss_pred             HHHhhccCCC
Confidence            9999999885

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.96  E-value=2.3e-28  Score=163.78  Aligned_cols=102  Identities=27%  Similarity=0.449  Sum_probs=88.1

Q ss_pred             CccccCHHHHHHHHh--C-CCEEEecCChhhHhc-CCCCCceeeccccccCCCCCCCHHHHHHHH--------hccCCCC
Q 031899           38 VPTSVPVRVAHELLQ--A-GHRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVS--------TRFRKHD  105 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~--~-~~~iiDvR~~~e~~~-ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  105 (151)
                      ....|+++++.++++  + +++|||||++.||.. ||||||+|+|+..+            ....        ..+++++
T Consensus        20 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~l------------~~~~~~~~~~~~~~~~~~~   87 (139)
T 2hhg_A           20 SIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGML------------EFWIDPQSPYAKPIFQEDK   87 (139)
T ss_dssp             TSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGGGH------------HHHHCTTSTTCCGGGGSSS
T ss_pred             hcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChHHH------------HHhcCccchhhhccCCCCC
Confidence            446799999999887  3 488999999999999 99999999999532            2211        2357899


Q ss_pred             eEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          106 EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       106 ~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      +||+||.+|.||..+++.|+..||+||++|+||+.+|.++|+|+++
T Consensus        88 ~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  133 (139)
T 2hhg_A           88 KFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEA  133 (139)
T ss_dssp             EEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCCC-
T ss_pred             eEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCeec
Confidence            9999999999999999999999999999999999999999999873

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.95  E-value=1.6e-28  Score=164.44  Aligned_cols=104  Identities=24%  Similarity=0.370  Sum_probs=89.9

Q ss_pred             CccccCHHHHHHHHh-C-CCEEEecCChhhHhc-CC--CCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeC
Q 031899           38 VPTSVPVRVAHELLQ-A-GHRYLDVRTPEEFSA-GH--ATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ  112 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~-~-~~~iiDvR~~~e~~~-gh--IpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~  112 (151)
                      ....|+++++.++++ + +++|||||++.||.. ||  ||||+|+|+..+.         . ......++++++||+||.
T Consensus        21 ~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~---------~-~~~~~~l~~~~~ivvyC~   90 (137)
T 1qxn_A           21 DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLE---------P-LLAKSGLDPEKPVVVFCK   90 (137)
T ss_dssp             SSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSH---------H-HHHHHCCCTTSCEEEECC
T ss_pred             cCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhh---------h-HHhhccCCCCCeEEEEcC
Confidence            346789999999886 4 499999999999999 99  9999999995221         0 113456788999999999


Q ss_pred             CChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          113 SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       113 ~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      +|.||..+++.|++.||++|++|+||+.+|.++|+|+++
T Consensus        91 ~G~rS~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  129 (137)
T 1qxn_A           91 TAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD  129 (137)
T ss_dssp             SSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEEC
T ss_pred             CCcHHHHHHHHHHHcCCcceEEEcCcHHHHHHCCCCccc
Confidence            999999999999999999999999999999999999863

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.95  E-value=4e-28  Score=179.38  Aligned_cols=145  Identities=20%  Similarity=0.292  Sum_probs=115.2

Q ss_pred             cccccCccccccccccccccCccccCcc-c---cc-------CCccccCHHHHHHHHhCCCEEEecCChhhHhc------
Q 031899            6 DQQRCDNIGFISSKILSFCPKASLRGNL-E---AV-------GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSA------   68 (151)
Q Consensus         6 ~~~~~~~v~~l~gg~~~w~~~~~~~~~~-~---~~-------~~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~------   68 (151)
                      ...+|++|.+|.||+.+|.......... .   ..       .....++++++.+++.++. |||||++.||..      
T Consensus        99 ~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~-liDvR~~~e~~~~~~~~~  177 (277)
T 3aay_A           99 KLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKN-LIDVRSPDEFSGKILAPA  177 (277)
T ss_dssp             HHTTCCSEEEETTHHHHHHHTTCCCBCCCCCCCCCCCCCCCCCGGGEECHHHHHHTTTTSE-EEECSCHHHHHTSCCC--
T ss_pred             HHcCCCcEEEecCCHHHHHHcCCccccCCCCcCCCCccccCcccchhcCHHHHHHhcCCCC-EEEeCChHHeeeeecccc
Confidence            4578999999999999997754321111 0   00       0112367899988876555 999999999985      


Q ss_pred             ----------CCCCCceeeccccccC-CCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHH-CCCCceeE
Q 031899           69 ----------GHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLN-AGFAGITD  134 (151)
Q Consensus        69 ----------ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~-~G~~~v~~  134 (151)
                                ||||||+|+|+..+.. .+.+.+.+.+...+..  ++++++||+||++|.||..++..|++ +||++|++
T Consensus       178 ~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~  257 (277)
T 3aay_A          178 HLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKN  257 (277)
T ss_dssp             ---CCCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEE
T ss_pred             cccccccccCCcCCCceecCHHHhcCCCCcCCCHHHHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCccee
Confidence                      9999999999976543 4567777777776663  68899999999999999999999996 99999999


Q ss_pred             ccccHHHHHh-CCCCCCC
Q 031899          135 IAGGFAAWRQ-NGLPTEP  151 (151)
Q Consensus       135 l~GG~~~W~~-~g~pv~~  151 (151)
                      |+||+.+|.. +|+|+++
T Consensus       258 l~GG~~~W~~~~g~pv~~  275 (277)
T 3aay_A          258 YDGSWTEYGSLVGAPIEL  275 (277)
T ss_dssp             ESSHHHHHTTSTTCCCBC
T ss_pred             eCchHHHHhcCCCCCCcc
Confidence            9999999999 8999874

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.95  E-value=9.4e-29  Score=155.44  Aligned_cols=93  Identities=24%  Similarity=0.300  Sum_probs=77.1

Q ss_pred             cccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHH
Q 031899           40 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  119 (151)
Q Consensus        40 ~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~  119 (151)
                      ..|+++++.++++++++|||||++.||..||||||+|+|+.            .+......+++ ++||+||.+|.||..
T Consensus         2 ~~is~~~l~~~~~~~~~liDvR~~~e~~~ghi~gAi~ip~~------------~l~~~~~~l~~-~~ivvyC~~g~rs~~   68 (94)
T 1wv9_A            2 RKVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVPLE------------KIQKGEHGLPR-RPLLLVCEKGLLSQV   68 (94)
T ss_dssp             CEECGGGHHHHHHTTCEEEECCCC--CCSCCSSCCEECCHH------------HHTTTCCCCCS-SCEEEECSSSHHHHH
T ss_pred             CcCCHHHHHHHHHCCCEEEECCCHHHHhcccCCCCEECCHH------------HHHHHHHhCCC-CCEEEEcCCCChHHH
Confidence            35788888888877899999999999999999999999994            33334455678 999999999999999


Q ss_pred             HHHHHHHCCCCceeEccccHHHHHhCC
Q 031899          120 AATDLLNAGFAGITDIAGGFAAWRQNG  146 (151)
Q Consensus       120 ~~~~L~~~G~~~v~~l~GG~~~W~~~g  146 (151)
                      +++.|++.||+ |++|+||+.+|.++|
T Consensus        69 a~~~L~~~G~~-v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           69 AALYLEAEGYE-AMSLEGGLQALTQGK   94 (94)
T ss_dssp             HHHHHHHHTCC-EEEETTGGGCC----
T ss_pred             HHHHHHHcCCc-EEEEcccHHHHHhCc
Confidence            99999999998 999999999998875

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.95  E-value=4.8e-28  Score=159.52  Aligned_cols=100  Identities=24%  Similarity=0.287  Sum_probs=89.3

Q ss_pred             ccccCHHHHHHHHhC---CCEEEecCChhhH-hcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCC
Q 031899           39 PTSVPVRVAHELLQA---GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG  114 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~---~~~iiDvR~~~e~-~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g  114 (151)
                      ...|+++++.+++++   +++|||||++.|| ..||||||+|+|+            ..+......++++++||+||.+|
T Consensus        14 ~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~------------~~l~~~~~~l~~~~~ivvyC~~g   81 (124)
T 3flh_A           14 SLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPA------------KDLATRIGELDPAKTYVVYDWTG   81 (124)
T ss_dssp             TTEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCH------------HHHHHHGGGSCTTSEEEEECSSS
T ss_pred             cceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCH------------HHHHHHHhcCCCCCeEEEEeCCC
Confidence            356899999888764   3899999999998 9999999999999            55667777889999999999999


Q ss_pred             hh--HHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          115 KR--SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       115 ~~--a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      .+  |..+++.|++.||+ |++|+||+.+|..+|+|+.+
T Consensus        82 ~r~~s~~a~~~L~~~G~~-v~~l~GG~~~W~~~~~p~~~  119 (124)
T 3flh_A           82 GTTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEH  119 (124)
T ss_dssp             SCSHHHHHHHHHHHHTCE-EEEETTHHHHHHHTTCCEEC
T ss_pred             CchHHHHHHHHHHHcCCe-EEEeCCcHHHHHHcCCCCCc
Confidence            98  89999999999996 99999999999999999753

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.95  E-value=7.1e-28  Score=162.53  Aligned_cols=100  Identities=23%  Similarity=0.352  Sum_probs=86.7

Q ss_pred             cccCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCC--
Q 031899           40 TSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG--  114 (151)
Q Consensus        40 ~~i~~~~~~~~~~~---~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g--  114 (151)
                      ..|+++++.+++++   +++|||||++.||..||||||+|+|+..+..           .....++++++||+||.+|  
T Consensus        16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~-----------~~~~~l~~~~~ivvyC~~g~~   84 (144)
T 3nhv_A           16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINE-----------DTTKRLSKEKVIITYCWGPAC   84 (144)
T ss_dssp             TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCST-----------TTTTTCCTTSEEEEECSCTTC
T ss_pred             cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHhH-----------HHHhhCCCCCeEEEEECCCCc
Confidence            46799999988875   4899999999999999999999999953321           1334578899999999998  


Q ss_pred             hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          115 KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       115 ~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      .+|..+++.|+..|| +|++|+||+.+|.++|+|+++
T Consensus        85 ~rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~g~pv~~  120 (144)
T 3nhv_A           85 NGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEVEG  120 (144)
T ss_dssp             CHHHHHHHHHHHTTC-EEEEEESHHHHHHHTTCCCBS
T ss_pred             cHHHHHHHHHHHCCC-eEEEeCCcHHHHHHCCCCccC
Confidence            699999999999999 699999999999999999863

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.94  E-value=2.3e-27  Score=153.16  Aligned_cols=87  Identities=18%  Similarity=0.319  Sum_probs=76.8

Q ss_pred             hCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHh--ccCCCCeEEEEeCCChhHHHHHHHHHHCCC
Q 031899           52 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAGF  129 (151)
Q Consensus        52 ~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~  129 (151)
                      .++++|||||++.||..||||||+|+|+.            .+.....  .++++++||+||.+|.||..+++.|+..||
T Consensus        14 ~~~~~liDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~   81 (110)
T 2k0z_A           14 FNDFIVVDVRELDEYEELHLPNATLISVN------------DQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHELGY   81 (110)
T ss_dssp             GGGSEEEEEECHHHHHHSBCTTEEEEETT------------CHHHHHHHHHSCSSSCEEEECSSSHHHHHHHHHHHHTTC
T ss_pred             cCCeEEEECCCHHHHhcCcCCCCEEcCHH------------HHHHHHHhcccCCCCEEEEEeCCCchHHHHHHHHHHCCC
Confidence            45689999999999999999999999994            2333333  378899999999999999999999999999


Q ss_pred             CceeEccccHHHHHhCCCCCCC
Q 031899          130 AGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       130 ~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      ++ ++|+||+.+|.++|+|+++
T Consensus        82 ~~-~~l~GG~~~W~~~g~p~~~  102 (110)
T 2k0z_A           82 TP-YYLEGNVYDFEKYGFRMVY  102 (110)
T ss_dssp             CC-EEEESCGGGTTTTTCCCBC
T ss_pred             CE-EEecCCHHHHHHCCCcEec
Confidence            99 9999999999999999863

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.94  E-value=1.2e-26  Score=185.50  Aligned_cols=133  Identities=19%  Similarity=0.300  Sum_probs=112.9

Q ss_pred             cccccCccccccc-cccccccCccccCcccccCCccccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeecccccc
Q 031899            6 DQQRCDNIGFISS-KILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRV   83 (151)
Q Consensus         6 ~~~~~~~v~~l~g-g~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~   83 (151)
                      .+.+| +|..|+| |+.+|..................++++++.+++++ +.+|||||++.||..||||||+|+|.    
T Consensus       343 ~~~G~-~v~~l~G~G~~~w~~~g~p~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA~~ip~----  417 (539)
T 1yt8_A          343 AQMGW-QVAVLDGLSEADFSERGAWSAPLPRQPRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLR----  417 (539)
T ss_dssp             HHTTC-EEEEECSCCGGGCCBCSSCCCCCCCCCCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCG----
T ss_pred             HHcCC-eEEEecCCChHHHHHhhccccCCCCCCcCCccCHHHHHHHhcCCCeEEEEeCCHHHhhcCcCCCchhCCH----
Confidence            45788 8999999 99999876443222222234568999999998875 48899999999999999999999998    


Q ss_pred             CCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899           84 GSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                              ..+...+..++++++||+||.+|.||..++..|+..||++|++|+||+.+|.++|+|+++
T Consensus       418 --------~~l~~~l~~l~~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  477 (539)
T 1yt8_A          418 --------SQLKQALERLGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTED  477 (539)
T ss_dssp             --------GGHHHHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBC
T ss_pred             --------HHHHHHHHhCCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHHHHHhCCCCccc
Confidence                    455666666789999999999999999999999999999999999999999999999863

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.94  E-value=1.3e-26  Score=156.90  Aligned_cols=110  Identities=28%  Similarity=0.440  Sum_probs=87.0

Q ss_pred             ccccCHHHHHHHHh--CCCEEEecCChhhHhc-CCC------CCceeeccccccCCCCCCCHHHHHHHHhc-----cCCC
Q 031899           39 PTSVPVRVAHELLQ--AGHRYLDVRTPEEFSA-GHA------TGAINVPYMYRVGSGMTKNLKFVEEVSTR-----FRKH  104 (151)
Q Consensus        39 ~~~i~~~~~~~~~~--~~~~iiDvR~~~e~~~-ghI------pgAi~ip~~~~~~~~~~~~~~~~~~~~~~-----~~~~  104 (151)
                      ...|+++++.++++  ++++|||||++.||.. |||      |||+|+|+.. .. .. ..+.+.+.+...     ++++
T Consensus         4 ~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~-~~-~~-~~~~~~~~l~~~l~~~~~~~~   80 (148)
T 2fsx_A            4 AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWAT-SD-GT-HNDNFLAELRDRIPADADQHE   80 (148)
T ss_dssp             SEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBC-TT-SC-BCTTHHHHHHHHCC-------
T ss_pred             cccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeec-cc-cc-cCHHHHHHHHHHHhhccCCCC
Confidence            45789999998886  3699999999999997 999      9999999965 21 11 122333444332     3788


Q ss_pred             CeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH------------HHHHhCCCCCCC
Q 031899          105 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF------------AAWRQNGLPTEP  151 (151)
Q Consensus       105 ~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~------------~~W~~~g~pv~~  151 (151)
                      ++|||||++|.||..+++.|+..||++|++|+||+            .+|+++|+|+++
T Consensus        81 ~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~w~~~~g~~~~~~W~~~glp~~~  139 (148)
T 2fsx_A           81 RPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWRAVGLPWRQ  139 (148)
T ss_dssp             CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTTCCCCTTSCCCSSSTTTTTCSEEC
T ss_pred             CEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChhhhhhhccccccccHHHcCCCCCc
Confidence            99999999999999999999999999999999999            789999999863

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.94  E-value=1.5e-26  Score=182.30  Aligned_cols=128  Identities=23%  Similarity=0.365  Sum_probs=108.7

Q ss_pred             cccccCccccccccccccccCccccCcccccCCccccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccC
Q 031899            6 DQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVG   84 (151)
Q Consensus         6 ~~~~~~~v~~l~gg~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~   84 (151)
                      ...+|++|..+.+|+.+|.......      .....++++++.+++++ +.+|||+|++.||..||||||+|+|+     
T Consensus       346 ~~~G~~~v~~~l~G~~~W~~~g~~~------~~~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA~~ip~-----  414 (474)
T 3tp9_A          346 RSIGIDDVVDWTDPAAVDRAAPDDV------ASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPL-----  414 (474)
T ss_dssp             HHTTCCCEEEEECGGGGTTCCGGGE------ECCEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTCEECCH-----
T ss_pred             HHcCCcceEEecCcHHHHHhccccc------ccccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCH-----
Confidence            4578999987555999998752211      12356899999888764 58999999999999999999999999     


Q ss_pred             CCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899           85 SGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                             ..+......++++++||+||++|.||..++..|+.+||++|++|+||+.+|.++|+|+++
T Consensus       415 -------~~l~~~~~~l~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~~W~~~g~p~~~  474 (474)
T 3tp9_A          415 -------SKLAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVEA  474 (474)
T ss_dssp             -------HHHTTTGGGSCSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHHHHTTCCCBC
T ss_pred             -------HHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHHHHHhCCCCCCC
Confidence                   444555566889999999999999999999999999999999999999999999999974

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.93  E-value=7e-26  Score=163.41  Aligned_cols=128  Identities=27%  Similarity=0.380  Sum_probs=99.5

Q ss_pred             cccCccccccccccccccCcccc-Ccccc--------cCCccccCHHHHHHHHhCCCEEEecCChhhHhc----------
Q 031899            8 QRCDNIGFISSKILSFCPKASLR-GNLEA--------VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSA----------   68 (151)
Q Consensus         8 ~~~~~v~~l~gg~~~w~~~~~~~-~~~~~--------~~~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~----------   68 (151)
                      .+|++|++|+||   |.. .... +....        ......++.+++.+    +.+|||+|++.||..          
T Consensus        84 ~G~~~v~~l~GG---W~~-~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~----~~~liDvR~~~e~~~~~~~~~~~~~  155 (230)
T 2eg4_A           84 LGGLEVQLWTEG---WEP-YATEKEEPKPERTEVVAKLRRDWLLTADEAAR----HPLLLDVRSPEEFQGKVHPPCCPRG  155 (230)
T ss_dssp             HTTCCEEEECSS---CGG-GCCBCSCCCCCCCCCCCCCCGGGBCCHHHHHT----CSCEEECSCHHHHTTSCCCTTSSSC
T ss_pred             cCCceEEEeCCC---Ccc-CcccCCCCCcccccceecCCccceeCHHHHhh----CCeEEeCCCHHHcCcccCCCCCccC
Confidence            689999999999   866 3221 11110        01123577877765    788999999999999          


Q ss_pred             CCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCC
Q 031899           69 GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP  148 (151)
Q Consensus        69 ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p  148 (151)
                      ||||||+|+|+..+....     +.+..  ..++++++||+||++|.||..++..|+++| .+|++|+||+.+|..+|+|
T Consensus       156 ghIpgA~~ip~~~~~~~~-----e~~~~--~~~~~~~~iv~~C~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~~g~p  227 (230)
T 2eg4_A          156 GRIPGSKNAPLELFLSPE-----GLLER--LGLQPGQEVGVYCHSGARSAVAFFVLRSLG-VRARNYLGSMHEWLQEGLP  227 (230)
T ss_dssp             CBCTTCEECCGGGGGCCT-----THHHH--HTCCTTCEEEEECSSSHHHHHHHHHHHHTT-CEEEECSSHHHHHHHTTCC
T ss_pred             CCCCCcEEcCHHHhCChH-----HHHHh--cCCCCCCCEEEEcCChHHHHHHHHHHHHcC-CCcEEecCcHHHHhhcCCC
Confidence            999999999997553321     11111  246889999999999999999999999999 8999999999999999999


Q ss_pred             CCC
Q 031899          149 TEP  151 (151)
Q Consensus       149 v~~  151 (151)
                      +++
T Consensus       228 ~~~  230 (230)
T 2eg4_A          228 TEP  230 (230)
T ss_dssp             CBC
T ss_pred             CCC
Confidence            974

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.93  E-value=8.1e-26  Score=176.05  Aligned_cols=146  Identities=12%  Similarity=0.154  Sum_probs=115.1

Q ss_pred             cccccCccccccccccccccCccccC--cccc------------cCCccccCHHHHHHHHhC-CCEEEecCChhhH----
Q 031899            6 DQQRCDNIGFISSKILSFCPKASLRG--NLEA------------VGVPTSVPVRVAHELLQA-GHRYLDVRTPEEF----   66 (151)
Q Consensus         6 ~~~~~~~v~~l~gg~~~w~~~~~~~~--~~~~------------~~~~~~i~~~~~~~~~~~-~~~iiDvR~~~e~----   66 (151)
                      ...+|++|.+|+||+..|........  ....            ......++.+++.+++++ +.+|||||++.||    
T Consensus       224 ~~~G~~~v~~l~Gg~~~W~~~g~pv~~g~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~  303 (423)
T 2wlr_A          224 LYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKVKAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTT  303 (423)
T ss_dssp             HHHTCSCEEEETTTHHHHHHTTCCCBCSSCCCCCCCCCCSSCSCSCGGGEECHHHHHTTTTCSSEEEEECSCHHHHHTSC
T ss_pred             HHcCCCCeEEECCCHHHHhhCCCCcccCCCCCCCCCcCcccccCCChhheecHHHHHHHhcCCCceEEecCchhheeeec
Confidence            45789999999999999976432211  1110            011235889999887764 4889999999999    


Q ss_pred             -------hcCCCCCceeeccc-------ccc-CCCCCCCHHHHHHHHh--ccCCCCeEEEEeCCChhHHHHHHHHHHCCC
Q 031899           67 -------SAGHATGAINVPYM-------YRV-GSGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAGF  129 (151)
Q Consensus        67 -------~~ghIpgAi~ip~~-------~~~-~~~~~~~~~~~~~~~~--~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~  129 (151)
                             ..||||||+|+|+.       ++. .++.+.+.+.+...+.  .++++++||+||++|.||..++..|+.+||
T Consensus       304 ~~~~~~~~~GhIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~  383 (423)
T 2wlr_A          304 SGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGW  383 (423)
T ss_dssp             CSSTTCCCCSEETTCEECCCCSSTTCCGGGBCTTSSBCCHHHHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTC
T ss_pred             cCCCCCCcCCCCCCccccccccccccHHHHcCCCCcCCCHHHHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCC
Confidence                   89999999999985       222 2455667777777664  468899999999999999999999999999


Q ss_pred             CceeEccccHHHHHh-CCCCCCC
Q 031899          130 AGITDIAGGFAAWRQ-NGLPTEP  151 (151)
Q Consensus       130 ~~v~~l~GG~~~W~~-~g~pv~~  151 (151)
                      ++|++|+||+.+|.. .|+|+++
T Consensus       384 ~~v~~~~GG~~~W~~~~~~Pv~~  406 (423)
T 2wlr_A          384 KNVSVYDGGWYEWSSDPKNPVAT  406 (423)
T ss_dssp             SSEEEESSHHHHHTTSTTSCEEC
T ss_pred             CCcceeCccHHHHhcCCCCCccc
Confidence            999999999999998 8999863

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.93  E-value=1.7e-25  Score=164.84  Aligned_cols=113  Identities=19%  Similarity=0.169  Sum_probs=97.5

Q ss_pred             ccccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccCC-----CCCCCHHHHHHHHhc--cCCCCeEEEE
Q 031899           39 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--FRKHDEIIVG  110 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~iv~~  110 (151)
                      +..|+++++.+++++ +++|||||++.||..||||||+|+|+..+...     +++.+.+.+...+..  ++++++||||
T Consensus         8 ~~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvy   87 (271)
T 1e0c_A            8 PLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVY   87 (271)
T ss_dssp             CSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccCCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEE
Confidence            457899999988854 58999999999999999999999999765432     455666677776665  6889999999


Q ss_pred             eCCCh-hHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          111 CQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       111 c~~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      |++|. +|.++++.|+..||++|++|+||+.+|..+|+|+++
T Consensus        88 c~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~~  129 (271)
T 1e0c_A           88 DDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSR  129 (271)
T ss_dssp             CSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             cCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCccC
Confidence            99987 999999999999999999999999999999999863

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.93  E-value=1.6e-26  Score=157.24  Aligned_cols=106  Identities=19%  Similarity=0.289  Sum_probs=88.1

Q ss_pred             CccccCHHHHHHHHh-CCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeC-CCh
Q 031899           38 VPTSVPVRVAHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGK  115 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~-~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~-~g~  115 (151)
                      ....|+++++.++++ ++++|||||++.||..||||||+|+|+..+.        +.+..+...++++++||+||+ +|.
T Consensus        26 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~--------~~~~~l~~~~~~~~~iVvyC~~~G~   97 (152)
T 1t3k_A           26 SISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFD--------DKISHLVQNVKDKDTLVFHSALSQV   97 (152)
T ss_dssp             SSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSS--------TTHHHHHHTCCSCCEEEESSSCCSS
T ss_pred             CCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHH--------HHHHHHHHhcCCCCEEEEEcCCCCc
Confidence            346788888887775 3589999999999999999999999995432        234555555678999999999 999


Q ss_pred             hHHHHHHHHH--------HCCCCceeEccccHHHHHhCCCCCCC
Q 031899          116 RSMMAATDLL--------NAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       116 ~a~~~~~~L~--------~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      |+..++..|.        ..||++|++|+||+.+|.++|+|+++
T Consensus        98 rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  141 (152)
T 1t3k_A           98 RGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCR  141 (152)
T ss_dssp             SHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCC
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCcccc
Confidence            9988888774        38999999999999999999999874

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.92  E-value=4.7e-25  Score=166.09  Aligned_cols=113  Identities=16%  Similarity=0.186  Sum_probs=96.4

Q ss_pred             ccccCHHHHHHHHhC-CCEEEecCChhh-HhcCCCCCceeecccccc---CCCCCCCHHHHHHHHhc--cCCCCeEEEEe
Q 031899           39 PTSVPVRVAHELLQA-GHRYLDVRTPEE-FSAGHATGAINVPYMYRV---GSGMTKNLKFVEEVSTR--FRKHDEIIVGC  111 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-~~~iiDvR~~~e-~~~ghIpgAi~ip~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~iv~~c  111 (151)
                      ...|+++++.+++++ +++|||||++.| |..||||||+|+|+...+   ....+.+.+.+...+..  ++++++||+||
T Consensus        39 ~~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~lgi~~~~~vVvyc  118 (318)
T 3hzu_A           39 ERLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDPRVRDYINGEQFAELMDRKGIARDDTVVIYG  118 (318)
T ss_dssp             GGEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             CceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCchhhhccCcccCCCCHHHHHHHHHHcCCCCCCeEEEEC
Confidence            457999999998864 589999999876 999999999999985333   23456666777777666  67899999999


Q ss_pred             CCCh-hHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          112 QSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       112 ~~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      ++|. +|.++++.|+..||++|++|+||+.+|.++|+|+++
T Consensus       119 ~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  159 (318)
T 3hzu_A          119 DKSNWWAAYALWVFTLFGHADVRLLNGGRDLWLAERRETTL  159 (318)
T ss_dssp             SGGGHHHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBC
T ss_pred             CCCCccHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCccc
Confidence            9887 899999999999999999999999999999999863

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.92  E-value=4.8e-25  Score=171.68  Aligned_cols=140  Identities=17%  Similarity=0.244  Sum_probs=113.5

Q ss_pred             cccccCccccccccccccccCccccCcccccCCccccCHHHHHHHHh---------CCCEEEecC--ChhhHhcCCCCCc
Q 031899            6 DQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQ---------AGHRYLDVR--TPEEFSAGHATGA   74 (151)
Q Consensus         6 ~~~~~~~v~~l~gg~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~iiDvR--~~~e~~~ghIpgA   74 (151)
                      ...++++|.+|+||+.+   .....   ........++++++.++++         ++++|||+|  ++.||..||||||
T Consensus        96 ~~~G~~~V~vl~Gg~~~---~g~~~---~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA  169 (423)
T 2wlr_A           96 QKAGLTHISILSDALSE---PSRLQ---KLPHFEQLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGA  169 (423)
T ss_dssp             HHTTCCCEEEBTTTTSC---GGGCB---CCTTGGGEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTC
T ss_pred             HHcCCceeEeccchhhc---CCCcc---cCCCCCcccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCc
Confidence            45789999999997532   11100   1112335789999988876         358899999  9999999999999


Q ss_pred             eeeccccccC--CCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899           75 INVPYMYRVG--SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus        75 i~ip~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      +|+|+..+..  .+.+.+.+.+...+..  ++++++||+||++|.+|..++..|+.+||++|++|+||+.+|..+|+|++
T Consensus       170 ~nip~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv~  249 (423)
T 2wlr_A          170 DYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVE  249 (423)
T ss_dssp             EEEEGGGTEETTTTEECCHHHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHHHHHTTCCCB
T ss_pred             EEcCHHHhccCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHHHhhCCCCcc
Confidence            9999977643  3567777888877754  57899999999999999999999999999999999999999999999986


Q ss_pred             C
Q 031899          151 P  151 (151)
Q Consensus       151 ~  151 (151)
                      +
T Consensus       250 ~  250 (423)
T 2wlr_A          250 R  250 (423)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.92  E-value=1.9e-25  Score=148.22  Aligned_cols=104  Identities=25%  Similarity=0.402  Sum_probs=79.2

Q ss_pred             ccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCC----------C-----------CCCCHHHHHHH
Q 031899           39 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------G-----------MTKNLKFVEEV   97 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~----------~-----------~~~~~~~~~~~   97 (151)
                      ...|+++++.+  .++++|||||++.||..||||||+|+|+..+...          +           .......+...
T Consensus         4 ~~~i~~~el~~--~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (134)
T 3g5j_A            4 MSVIKIEKALK--LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSYKLKDIYLQ   81 (134)
T ss_dssp             -CEECHHHHTT--CTTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHGGGHHHHHHH
T ss_pred             ccccCHHHHHh--cCCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhHHHhcccccccccHHHHHHH
Confidence            35678888765  5668999999999999999999999999532100          0           00000122233


Q ss_pred             HhccCCC-CeEEEEe-CCChhHHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899           98 STRFRKH-DEIIVGC-QSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus        98 ~~~~~~~-~~iv~~c-~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~  145 (151)
                      ...++++ ++||+|| .+|.||..+++.|+..|| +|++|+||+.+|.+.
T Consensus        82 ~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~  130 (134)
T 3g5j_A           82 AAELALNYDNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKAYRNF  130 (134)
T ss_dssp             HHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHHHHHHH
T ss_pred             HHHhccCCCeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHHHHHHH
Confidence            3446677 9999999 589999999999999999 999999999999874

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.92  E-value=4.8e-25  Score=163.14  Aligned_cols=111  Identities=19%  Similarity=0.198  Sum_probs=95.7

Q ss_pred             cccCHHHHHHHHhC-CCEEEecC----------ChhhHhcCCCCCceeeccccccCC-----CCCCCHHHHHHHHhc--c
Q 031899           40 TSVPVRVAHELLQA-GHRYLDVR----------TPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--F  101 (151)
Q Consensus        40 ~~i~~~~~~~~~~~-~~~iiDvR----------~~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~--~  101 (151)
                      ..|+++++.+++++ +++|||||          ++.||..||||||+|+|+..+...     .++++.+.+...+..  +
T Consensus         4 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi   83 (280)
T 1urh_A            4 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGV   83 (280)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTC
T ss_pred             ceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            46899999988864 58999999          789999999999999999765432     355566777776665  5


Q ss_pred             CCCCeEEEEeCCChh-HHHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899          102 RKHDEIIVGCQSGKR-SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       102 ~~~~~iv~~c~~g~~-a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      +++++||+||++|.+ |.++++.|+.+||++|++|+||+.+|..+|+|++
T Consensus        84 ~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  133 (280)
T 1urh_A           84 NQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLE  133 (280)
T ss_dssp             CTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCB
T ss_pred             CCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCccc
Confidence            789999999999988 9999999999999999999999999999999986

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.92  E-value=1.3e-25  Score=147.93  Aligned_cols=106  Identities=24%  Similarity=0.223  Sum_probs=82.1

Q ss_pred             ccCHHHHHHHHhC--CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc---------cCCCCeEEE
Q 031899           41 SVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---------FRKHDEIIV  109 (151)
Q Consensus        41 ~i~~~~~~~~~~~--~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~iv~  109 (151)
                      .|+++++.+++++  +++|||||++.||..||||||+|+|+..+...    ....+..+...         .+++++||+
T Consensus         2 ~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~ivv   77 (127)
T 3i2v_A            2 RVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERR----DAESLKLLKEAIWEEKQGTQEGAAVPIYV   77 (127)
T ss_dssp             EECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTT----CHHHHHHHHHHHHHHHTTC---CCEEEEE
T ss_pred             CCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhh----hhhhHHHHHHHHhhhcccccCCCCCeEEE
Confidence            5789999988864  38999999999999999999999999654321    11111111111         234569999


Q ss_pred             EeCCChhHHHHHHHHHHC------CCCceeEccccHHHHHhCCCCCC
Q 031899          110 GCQSGKRSMMAATDLLNA------GFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       110 ~c~~g~~a~~~~~~L~~~------G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      ||.+|.+|..+++.|++.      ||.+|++|+||+.+|.++..|..
T Consensus        78 ~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~~~  124 (127)
T 3i2v_A           78 ICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDGTF  124 (127)
T ss_dssp             ECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCTTS
T ss_pred             EcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCCCC
Confidence            999999999999999998      68899999999999998776643

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.92  E-value=1e-25  Score=138.93  Aligned_cols=77  Identities=32%  Similarity=0.567  Sum_probs=68.7

Q ss_pred             CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEEeCCChhHHHHHHHHHHCCCCce
Q 031899           55 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAGFAGI  132 (151)
Q Consensus        55 ~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v  132 (151)
                      ++|||||++.||..||||||+|+|+            ..+......+  +++++||+||.+|.||..+++.|++.||+++
T Consensus         2 ~~liDvR~~~e~~~ghIpgA~~ip~------------~~l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v   69 (85)
T 2jtq_A            2 EHWIDVRVPEQYQQEHVQGAINIPL------------KEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHV   69 (85)
T ss_dssp             EEEEECSCHHHHTTEEETTCEECCH------------HHHHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSE
T ss_pred             CEEEECCCHHHHHhCCCCCCEEcCH------------HHHHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCE
Confidence            5799999999999999999999999            4455555555  7899999999999999999999999999999


Q ss_pred             eEccccHHHHHh
Q 031899          133 TDIAGGFAAWRQ  144 (151)
Q Consensus       133 ~~l~GG~~~W~~  144 (151)
                      +++ ||+.+|..
T Consensus        70 ~~l-GG~~~w~~   80 (85)
T 2jtq_A           70 ENA-GGLKDIAM   80 (85)
T ss_dssp             EEE-EETTTCCS
T ss_pred             Eec-cCHHHHhc
Confidence            999 99999953

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.92  E-value=2.5e-26  Score=176.31  Aligned_cols=140  Identities=14%  Similarity=0.191  Sum_probs=104.4

Q ss_pred             ccccccCccccccccccccccCcccc--Cccccc-------C-----CccccCHHHHHHHHhCCCEEEecCChhhHh---
Q 031899            5 GDQQRCDNIGFISSKILSFCPKASLR--GNLEAV-------G-----VPTSVPVRVAHELLQAGHRYLDVRTPEEFS---   67 (151)
Q Consensus         5 ~~~~~~~~v~~l~gg~~~w~~~~~~~--~~~~~~-------~-----~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~---   67 (151)
                      ....+| +|++|+||+.+|.......  +.....       .     .+..+ .+++    ..+.+|||||++.||.   
T Consensus       117 L~~~G~-~V~~L~GG~~aW~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v----~~~~~lIDvR~~~Ef~G~~  190 (373)
T 1okg_A          117 LNSLGA-DAYVINGGFQACKAAGLEMESGEPSSLPRPATHWPFKTAFQHHYL-VDEI----PPQAIITDARSADRFASTV  190 (373)
T ss_dssp             HHHHTC-CEEEETTTTHHHHTTTCCEECSCCCSCCCCCCCCCSCSSCCSBCC-GGGS----CTTCCEEECSCHHHHTCCS
T ss_pred             HHHcCC-eEEEeCCCHHHHHhhcCCcccCCCCcCccccccccccccCChHHH-HHHh----ccCceEEeCCCHHHccccc
Confidence            345789 9999999999998754321  111000       0     01111 1111    4568899999999999   


Q ss_pred             --------cCCCCCceeecccccc--C-CCC-CCCHHHHHHHHhcc----CC---CCeEEEEeCCChhHHHHHHHHHHCC
Q 031899           68 --------AGHATGAINVPYMYRV--G-SGM-TKNLKFVEEVSTRF----RK---HDEIIVGCQSGKRSMMAATDLLNAG  128 (151)
Q Consensus        68 --------~ghIpgAi~ip~~~~~--~-~~~-~~~~~~~~~~~~~~----~~---~~~iv~~c~~g~~a~~~~~~L~~~G  128 (151)
                              .||||||+|+|+..+.  . ++. +.+.+.+...+..+    ++   +++||+||++|.||..++..|+.+|
T Consensus       191 ~~~~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~~~~l~~~~~~~~~gi~~~~~d~~ivvyC~sG~rs~~a~~~L~~~G  270 (373)
T 1okg_A          191 RPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVFSCGSGVTACINIALVHHLG  270 (373)
T ss_dssp             SCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEEECSSSSTHHHHHHHHHHTT
T ss_pred             cccccCCcCccCCCcEEecHHHhhccCCCCCccCCHHHHHHHHHhhhcCCCcccCCCCEEEECCchHHHHHHHHHHHHcC
Confidence                    9999999999998765  3 334 66677777766654    77   8999999999999999999999999


Q ss_pred             CCceeEccccHHHHHh-CCCCCC
Q 031899          129 FAGITDIAGGFAAWRQ-NGLPTE  150 (151)
Q Consensus       129 ~~~v~~l~GG~~~W~~-~g~pv~  150 (151)
                      |++|++|+|||.+|.. .++|++
T Consensus       271 ~~~v~~~~GG~~~W~~~~~~pv~  293 (373)
T 1okg_A          271 LGHPYLYCGSWSEYSGLFRPPIM  293 (373)
T ss_dssp             SCCCEECSSHHHHHHHHTHHHHH
T ss_pred             CCCeeEeCChHHHHhcCCCCCcc
Confidence            9999999999999987 677753

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.92  E-value=2.1e-25  Score=148.66  Aligned_cols=106  Identities=21%  Similarity=0.302  Sum_probs=86.4

Q ss_pred             ccccCHHHHHHHHh--CCCEEEecCChhhHhc-CCC------CCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeE
Q 031899           39 PTSVPVRVAHELLQ--AGHRYLDVRTPEEFSA-GHA------TGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEI  107 (151)
Q Consensus        39 ~~~i~~~~~~~~~~--~~~~iiDvR~~~e~~~-ghI------pgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i  107 (151)
                      ...|+++++.++++  ++++|||||++.||.. +|+      |||+|+|+..+      ....++..+...+  +++++|
T Consensus         4 ~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~------~~~~~~~~l~~~~~~~~~~~i   77 (134)
T 1vee_A            4 GSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGE------DKPGFLKKLSLKFKDPENTTL   77 (134)
T ss_dssp             SCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGG------GHHHHHHHHHTTCSCGGGCEE
T ss_pred             CCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccc------cChhHHHHHHHHhCCCCCCEE
Confidence            35689999998886  3589999999999985 333      79999998532      1223444444333  678999


Q ss_pred             EEEeCCChhHHHHHHHHHHCCCCceeEccccH---HHHHhCCCCCC
Q 031899          108 IVGCQSGKRSMMAATDLLNAGFAGITDIAGGF---AAWRQNGLPTE  150 (151)
Q Consensus       108 v~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~---~~W~~~g~pv~  150 (151)
                      |+||.+|.||..++..|+++||++|++|.||+   .+|.++|+|++
T Consensus        78 vv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~  123 (134)
T 1vee_A           78 YILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWI  123 (134)
T ss_dssp             EEECSSSTTHHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEE
T ss_pred             EEEeCCCCcHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCC
Confidence            99999999999999999999999999999999   78999999986

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.91  E-value=5.7e-24  Score=158.62  Aligned_cols=113  Identities=19%  Similarity=0.199  Sum_probs=95.3

Q ss_pred             ccccCHHHHHHHHhC-----CCEEEecC--------ChhhHhcCCCCCceeeccccccCC-----CCCCCHHHHHHHHhc
Q 031899           39 PTSVPVRVAHELLQA-----GHRYLDVR--------TPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR  100 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-----~~~iiDvR--------~~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~  100 (151)
                      ...|+++++.+++++     +++|||||        ++.||..||||||+|+|+..+...     .++++.+.+...+..
T Consensus         7 ~~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~l~~   86 (296)
T 1rhs_A            7 RALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGS   86 (296)
T ss_dssp             CSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHH
T ss_pred             CceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence            457899999998875     58999999        689999999999999999754421     345566666666664


Q ss_pred             --cCCCCeEEEEeCC--Chh-HHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          101 --FRKHDEIIVGCQS--GKR-SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       101 --~~~~~~iv~~c~~--g~~-a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                        ++++++||+||.+  |.+ +.++++.|+.+||++|++|+||+.+|..+|+|+++
T Consensus        87 lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  142 (296)
T 1rhs_A           87 LGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTS  142 (296)
T ss_dssp             TTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             cCCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCcccc
Confidence              5789999999998  765 88999999999999999999999999999999863

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.91  E-value=2.5e-24  Score=158.99  Aligned_cols=112  Identities=16%  Similarity=0.225  Sum_probs=94.0

Q ss_pred             cccCHHHHHHHHhC-CCEEEecCC-hhhHhcCCCCCceeeccccccC---CCCCCCHHHHHHHHhc--cCCCCeEEEEeC
Q 031899           40 TSVPVRVAHELLQA-GHRYLDVRT-PEEFSAGHATGAINVPYMYRVG---SGMTKNLKFVEEVSTR--FRKHDEIIVGCQ  112 (151)
Q Consensus        40 ~~i~~~~~~~~~~~-~~~iiDvR~-~~e~~~ghIpgAi~ip~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~iv~~c~  112 (151)
                      ..|+++++.+++++ +++|||||+ +.||..||||||+|+|+..+..   ...+.+.+.+...+..  ++++++|||||.
T Consensus         6 ~~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvyc~   85 (277)
T 3aay_A            6 VLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGG   85 (277)
T ss_dssp             HEECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCSSSSSBCCHHHHHHHHHHHTCCTTSEEEEECS
T ss_pred             ceEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccccCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECC
Confidence            46899999888765 488999998 8999999999999999865332   2344555666666665  688999999999


Q ss_pred             CCh-hHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          113 SGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       113 ~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      +|. +|.++++.|+.+||++|++|+||+.+|..+|+|+++
T Consensus        86 ~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  125 (277)
T 3aay_A           86 NNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSS  125 (277)
T ss_dssp             GGGHHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCBC
T ss_pred             CCCchHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCcccc
Confidence            874 788999999999999999999999999999999863

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.91  E-value=1.1e-23  Score=157.65  Aligned_cols=114  Identities=18%  Similarity=0.206  Sum_probs=94.6

Q ss_pred             CccccCHHHHHHHHhC-----CCEEEecC---------ChhhHhcCCCCCceeeccccccC-----CCCCCCHHHHHHHH
Q 031899           38 VPTSVPVRVAHELLQA-----GHRYLDVR---------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVS   98 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~-----~~~iiDvR---------~~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~   98 (151)
                      ....|+++++.+++++     +++|||||         ++.||..||||||+|+|+..+..     ..++++.+.+...+
T Consensus        20 ~~~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~~~~~~~lp~~~~~~~~~   99 (302)
T 3olh_A           20 FQSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYA   99 (302)
T ss_dssp             CCCEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSSCSSSSCCCCHHHHHHHH
T ss_pred             CCCccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcCCCCCCCCCCHHHHHHHH
Confidence            3467999999998875     68999999         78999999999999999865432     24455666777776


Q ss_pred             hcc--CCCCeEEEEeCC---ChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899           99 TRF--RKHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus        99 ~~~--~~~~~iv~~c~~---g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      ..+  +++++||+||++   +.+|.++++.|+..||++|++|+||+.+|.++|+|+++
T Consensus       100 ~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  157 (302)
T 3olh_A          100 GRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSS  157 (302)
T ss_dssp             HHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC-CC
T ss_pred             HHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCCccc
Confidence            664  789999999964   35699999999999999999999999999999999863

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.90  E-value=9.9e-24  Score=150.49  Aligned_cols=101  Identities=18%  Similarity=0.238  Sum_probs=84.3

Q ss_pred             CccccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHh---ccC--CCC
Q 031899           38 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RFR--KHD  105 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~-------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~---~~~--~~~  105 (151)
                      ....|+++++.+++++       +++|||||++.||..||||||+|+|+.           ........   .++  +++
T Consensus        42 ~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~-----------~l~~~~~~~~~~l~~~~d~  110 (211)
T 1qb0_A           42 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLDK  110 (211)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHTTTCCCSSTTS
T ss_pred             CCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCch-----------HHHHHhhhhhhhccccCCC
Confidence            4568999999998875       588999999999999999999999994           22222222   343  678


Q ss_pred             eE--EEEeC-CChhHHHHHHHHHH----------CCCCceeEccccHHHHHhCCCCC
Q 031899          106 EI--IVGCQ-SGKRSMMAATDLLN----------AGFAGITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       106 ~i--v~~c~-~g~~a~~~~~~L~~----------~G~~~v~~l~GG~~~W~~~g~pv  149 (151)
                      ++  |+||. +|.|+..++..|++          .||++|++|+||+.+|.++|.|+
T Consensus       111 ~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~~  167 (211)
T 1qb0_A          111 RVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNF  167 (211)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGG
T ss_pred             CeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCccc
Confidence            87  78899 99999999999986          69999999999999999998875

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.90  E-value=2.2e-24  Score=159.87  Aligned_cols=111  Identities=16%  Similarity=0.195  Sum_probs=93.9

Q ss_pred             cccCHHHHHHHHhC-CCEEEecC-ChhhHhcCCCCCceeeccccccC---CCCCCCHHHHHHHHhc--cCCCCeEEEEeC
Q 031899           40 TSVPVRVAHELLQA-GHRYLDVR-TPEEFSAGHATGAINVPYMYRVG---SGMTKNLKFVEEVSTR--FRKHDEIIVGCQ  112 (151)
Q Consensus        40 ~~i~~~~~~~~~~~-~~~iiDvR-~~~e~~~ghIpgAi~ip~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~iv~~c~  112 (151)
                      ..|+++++.+++++ +++||||| ++.+|..||||||+|+|+.....   ...+.+.+.+...+..  ++++++||+||+
T Consensus         8 ~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ivvyc~   87 (285)
T 1uar_A            8 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLYGD   87 (285)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEECH
T ss_pred             ceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchhhccCCcccCCCCHHHHHHHHHHcCCCCCCeEEEECC
Confidence            57899999988875 58899999 78999999999999999864332   2345555566666665  578999999999


Q ss_pred             CCh-hHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899          113 SGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       113 ~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      +|. +|.++++.|+..||++|++|+||+.+|..+|+|++
T Consensus        88 ~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  126 (285)
T 1uar_A           88 KNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLT  126 (285)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCB
T ss_pred             CCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCccc
Confidence            987 79999999999999999999999999999999985

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.90  E-value=1.2e-23  Score=145.99  Aligned_cols=101  Identities=17%  Similarity=0.206  Sum_probs=81.1

Q ss_pred             CccccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHh---ccC--CCC
Q 031899           38 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RFR--KHD  105 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~-------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~---~~~--~~~  105 (151)
                      ....|+++++.+++++       +++|||||++.||..||||||+|+|+.           +.......   .++  +++
T Consensus        22 ~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~-----------~l~~~~~~~~~~~~~~~~~   90 (175)
T 2a2k_A           22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLDK   90 (175)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHSSCCCC----C
T ss_pred             CCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChh-----------HHHHHhhhhhhhccccCCC
Confidence            4567999999998874       588999999999999999999999994           22222222   133  678


Q ss_pred             eEEE--EeC-CChhHHHHHHHHHH----------CCCCceeEccccHHHHHhCCCCC
Q 031899          106 EIIV--GCQ-SGKRSMMAATDLLN----------AGFAGITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       106 ~iv~--~c~-~g~~a~~~~~~L~~----------~G~~~v~~l~GG~~~W~~~g~pv  149 (151)
                      +||+  ||+ +|.||..++..|++          +||++|++|+||+.+|.+++.|+
T Consensus        91 ~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~~  147 (175)
T 2a2k_A           91 RVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNF  147 (175)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGG
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCccc
Confidence            8754  698 89999999999985          49999999999999999998775

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.90  E-value=7.4e-24  Score=145.12  Aligned_cols=101  Identities=17%  Similarity=0.292  Sum_probs=83.0

Q ss_pred             CccccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHh---cc-CCCCe
Q 031899           38 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RF-RKHDE  106 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~-------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~  106 (151)
                      ....|+++++.+++++       +++|||||++.||..||||||+|+|+.           +.......   .+ +++++
T Consensus        21 ~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~-----------~~~~~~~~~~~~~~~~~~~   89 (161)
T 1c25_A           21 DLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHME-----------EEVEDFLLKKPIVPTDGKR   89 (161)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHTTTSCCCCCTTSE
T ss_pred             CcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChh-----------HHHHHHHhhhhhccCCCCC
Confidence            3467999999998875       588999999999999999999999994           22233222   22 56778


Q ss_pred             E--EEEeC-CChhHHHHHHHHHH----------CCCCceeEccccHHHHHhCCCCC
Q 031899          107 I--IVGCQ-SGKRSMMAATDLLN----------AGFAGITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       107 i--v~~c~-~g~~a~~~~~~L~~----------~G~~~v~~l~GG~~~W~~~g~pv  149 (151)
                      +  |+||. +|.||..++..|++          .||++|++|+||+.+|.+++.|+
T Consensus        90 ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~~  145 (161)
T 1c25_A           90 VIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSY  145 (161)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGG
T ss_pred             eEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHcccc
Confidence            6  67899 99999999999986          49999999999999999988765

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.90  E-value=8.9e-24  Score=168.94  Aligned_cols=134  Identities=19%  Similarity=0.305  Sum_probs=107.4

Q ss_pred             cccccCccccccccccccccCcccc--Ccccc----------cCCccccCHHHHHHHHhC--CCEEEecCChhhHhcCCC
Q 031899            6 DQQRCDNIGFISSKILSFCPKASLR--GNLEA----------VGVPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHA   71 (151)
Q Consensus         6 ~~~~~~~v~~l~gg~~~w~~~~~~~--~~~~~----------~~~~~~i~~~~~~~~~~~--~~~iiDvR~~~e~~~ghI   71 (151)
                      ...+|++|.+|.||+.+|.......  +....          ......++++++.+++.+  +.+|||+|++.||..|||
T Consensus        84 ~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~~~~~~~g~~~~~~~~~~~it~~~l~~~l~~~~~~~llDvR~~~e~~~ghI  163 (539)
T 1yt8_A           84 HDLGYSDVALLDGGLSGWRNAGGELFRDVNVPSKAFGELVEAERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSI  163 (539)
T ss_dssp             HHTTCSSEEEETTHHHHHHHTTCCCBCSSSHHHHHHHHHHHHHHCCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBC
T ss_pred             HHcCCCceEEeCCCHHHHHhcCCCcccCCcCcCcchhhhhhhhcCCCccCHHHHHHHHhCCCCcEEEeCCCHHHHhcCcC
Confidence            4578999999999999998764321  11000          012346899999888864  478999999999999999


Q ss_pred             CCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEEeCCChhHHHHHHHHHHCCCCc-eeEccccHHHHHhCCCC
Q 031899           72 TGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNGLP  148 (151)
Q Consensus        72 pgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~-v~~l~GG~~~W~~~g~p  148 (151)
                      |||+|+|+..            +......+  +++++||+||++|.+|..++..|+..||++ |+.+.||+.+|..+|+|
T Consensus       164 pgA~~ip~~~------------l~~~~~~l~~~~d~~iV~~C~~g~rs~~~~~~L~~~G~~~~v~~l~gG~~~W~~~g~p  231 (539)
T 1yt8_A          164 PGGISVPGAE------------LVLRVAELAPDPRTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQ  231 (539)
T ss_dssp             TTCEECCGGG------------HHHHHHHHCCSTTSEEEEECSSSHHHHHHHHHHHHTTCSSCEEEETTHHHHHHHTTCC
T ss_pred             CCCEeCCHHH------------HHHHHHhhCCCCCCeEEEECCCChHHHHHHHHHHHcCCCcceeeccCCHHHHHhCCCC
Confidence            9999999952            22223333  688999999999999999999999999999 78999999999999999


Q ss_pred             CCC
Q 031899          149 TEP  151 (151)
Q Consensus       149 v~~  151 (151)
                      +++
T Consensus       232 ~~~  234 (539)
T 1yt8_A          232 LEH  234 (539)
T ss_dssp             CBC
T ss_pred             cee
Confidence            863

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.89  E-value=1.3e-23  Score=161.19  Aligned_cols=110  Identities=16%  Similarity=0.078  Sum_probs=92.6

Q ss_pred             ccccCHHHHHHHHhCCCEEEecCC--------hhhHhcCCCCCceeecccc-ccC-------CCCCCCHHHHHHHHhc--
Q 031899           39 PTSVPVRVAHELLQAGHRYLDVRT--------PEEFSAGHATGAINVPYMY-RVG-------SGMTKNLKFVEEVSTR--  100 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~iiDvR~--------~~e~~~ghIpgAi~ip~~~-~~~-------~~~~~~~~~~~~~~~~--  100 (151)
                      ...++++++.+++++ ++|||||+        +.||..||||||+|+|+.. +..       ...+++.+.+...+..  
T Consensus        13 ~~~Is~~el~~~l~~-~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~~~~~~~~lp~~~~f~~~l~~~g   91 (373)
T 1okg_A           13 KVFLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPXAEFIDWCMANG   91 (373)
T ss_dssp             CCEECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTT
T ss_pred             CcEEcHHHHHHHcCC-cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccccCCccccCCCHHHHHHHHHHcC
Confidence            468999999888776 99999998        6999999999999999975 432       2345566666665543  


Q ss_pred             cCCCCeEEEEe-CCChhHH-HHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899          101 FRKHDEIIVGC-QSGKRSM-MAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       101 ~~~~~~iv~~c-~~g~~a~-~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      ++++++||+|| .+|.+++ ++++.|+.+|| +|++|+||+.+|.++|+|++
T Consensus        92 i~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~pv~  142 (373)
T 1okg_A           92 MAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEME  142 (373)
T ss_dssp             CSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEE
T ss_pred             CCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCCcc
Confidence            57899999999 7787876 99999999999 99999999999999999975

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.89  E-value=7.4e-24  Score=143.92  Aligned_cols=109  Identities=18%  Similarity=0.179  Sum_probs=78.8

Q ss_pred             cccCHHHHHHHHh---CCCEEEecCChhhHhcCCCCCceeeccccccC----CCCCCCHHHH-HHHHh--ccCCCCeEEE
Q 031899           40 TSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVG----SGMTKNLKFV-EEVST--RFRKHDEIIV  109 (151)
Q Consensus        40 ~~i~~~~~~~~~~---~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~----~~~~~~~~~~-~~~~~--~~~~~~~iv~  109 (151)
                      +.|+++++.++++   ++++|||||++.||..||||||+|+|+..+..    .+.......+ .....  .++++++|||
T Consensus         4 ~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~iVv   83 (153)
T 2vsw_A            4 TQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVV   83 (153)
T ss_dssp             EEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHHTTSSCHHHHHHHSCSSCCCCCTTSEEEE
T ss_pred             ccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhhcCCcCHHHhcCchhhhhhccCCCCeEEE
Confidence            5689999999886   35899999999999999999999999964311    0111000110 00001  2467899999


Q ss_pred             EeCCChhHHHH------HHHHHH--CCCCceeEccccHHHHHhCCCC
Q 031899          110 GCQSGKRSMMA------ATDLLN--AGFAGITDIAGGFAAWRQNGLP  148 (151)
Q Consensus       110 ~c~~g~~a~~~------~~~L~~--~G~~~v~~l~GG~~~W~~~g~p  148 (151)
                      ||++|.++..+      ++.|+.  .||++|++|+||+.+|.+.+.+
T Consensus        84 yc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~~~~  130 (153)
T 2vsw_A           84 YDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPG  130 (153)
T ss_dssp             ECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHHCGG
T ss_pred             EeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHhChh
Confidence            99999877655      567773  3999999999999999886543

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.89  E-value=3.7e-23  Score=140.53  Aligned_cols=103  Identities=20%  Similarity=0.276  Sum_probs=79.5

Q ss_pred             ccccCHHHHHHHHhC-----CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEEe
Q 031899           39 PTSVPVRVAHELLQA-----GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGC  111 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-----~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~c  111 (151)
                      ...|+++++.+++++     +++|||||++ ||..||||||+|+|+..+..       ..+..+...+  ...+.||+||
T Consensus         4 ~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~~-------~~~~~l~~~l~~~~~~~vV~yC   75 (152)
T 2j6p_A            4 YTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTE-------EMYEKLAKTLFEEKKELAVFHC   75 (152)
T ss_dssp             CEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCCH-------HHHHHHHHHHHHTTCCEEEEEC
T ss_pred             cCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhhH-------HHHHHHHHHhcccCCCEEEEEc
Confidence            356899999998875     6899999999 99999999999999953311       1222222222  2334577789


Q ss_pred             -CCChhHHHHH----HHHHHCCC--CceeEccccHHHHHhCCCCC
Q 031899          112 -QSGKRSMMAA----TDLLNAGF--AGITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       112 -~~g~~a~~~~----~~L~~~G~--~~v~~l~GG~~~W~~~g~pv  149 (151)
                       .+|.|+..++    ..|++.||  .+|++|+||+.+|.++|.++
T Consensus        76 ~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~  120 (152)
T 2j6p_A           76 AQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDV  120 (152)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTT
T ss_pred             CCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCC
Confidence             6899988887    77888997  58999999999999988765

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1e-22  Score=153.42  Aligned_cols=140  Identities=16%  Similarity=0.226  Sum_probs=102.4

Q ss_pred             cccCccccccccccccccCcccc--Ccccc------cC--------CccccCHHHHHHHHhC-----CCEEEecCChhhH
Q 031899            8 QRCDNIGFISSKILSFCPKASLR--GNLEA------VG--------VPTSVPVRVAHELLQA-----GHRYLDVRTPEEF   66 (151)
Q Consensus         8 ~~~~~v~~l~gg~~~w~~~~~~~--~~~~~------~~--------~~~~i~~~~~~~~~~~-----~~~iiDvR~~~e~   66 (151)
                      .++++|++|+|+ .+|+......  +....      ..        ....++.+++.+.++.     +++|||+|++.+|
T Consensus       137 ~Gh~~V~vLdGg-~aW~~~g~p~~~~~~~~~~p~p~~~~~~~~~~~~~~v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf  215 (327)
T 3utn_X          137 MGHPKVYLLNNF-NQYREFKYPLDSSKVAAFSPYPKSHYESSESFQDKEIVDYEEMFQLVKSGELAKKFNAFDARSLGRF  215 (327)
T ss_dssp             TTCSEEEEESCH-HHHHHTTCCCBCCCCSCSCSSCCCCCCCSCCCHHHHEECHHHHHHHHHTTCHHHHCEEEECSCHHHH
T ss_pred             cCCCceeecccH-HHHHHhCCCcccCCccCcCCcCCcccccccccCchheecHHHHhhhhhcccccccceeeccCcccee
Confidence            688999999977 8898754322  11100      00        0124677777777765     3789999999999


Q ss_pred             h-----------cCCCCCceeeccccccCC-C-CCCC-HHH----HHHHHh----ccCCCCeEEEEeCCChhHHHHHHHH
Q 031899           67 S-----------AGHATGAINVPYMYRVGS-G-MTKN-LKF----VEEVST----RFRKHDEIIVGCQSGKRSMMAATDL  124 (151)
Q Consensus        67 ~-----------~ghIpgAi~ip~~~~~~~-~-~~~~-~~~----~~~~~~----~~~~~~~iv~~c~~g~~a~~~~~~L  124 (151)
                      .           .||||||+|+|+..++.. + .++. .+.    ++..+.    .++++++||+||++|.+|+..+..|
T Consensus       216 ~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~~~~~~~~e~l~~~l~~~~~~~~~gid~~k~vI~yCgsGvtA~~~~laL  295 (327)
T 3utn_X          216 EGTEPEPRSDIPSGHIPGTQPLPYGSLLDPETKTYPEAGEAIHATLEKALKDFHCTLDPSKPTICSCGTGVSGVIIKTAL  295 (327)
T ss_dssp             HTSSCCSSSSCCCCBCTTEEECCGGGGSCTTTCCCCCTTHHHHHHHHHHHHHTTCCCCTTSCEEEECSSSHHHHHHHHHH
T ss_pred             cccccCccccccCCCCCCCcccChhhccCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCCCEEEECChHHHHHHHHHHH
Confidence            6           599999999999887743 2 2222 222    222222    3678899999999999999999999


Q ss_pred             HHCCCCceeEccccHHHHHhCCCC
Q 031899          125 LNAGFAGITDIAGGFAAWRQNGLP  148 (151)
Q Consensus       125 ~~~G~~~v~~l~GG~~~W~~~g~p  148 (151)
                      +.+||+++++|+|+|.+|.....|
T Consensus       296 ~~lG~~~v~lYdGSWsEW~~r~~p  319 (327)
T 3utn_X          296 ELAGVPNVRLYDGSWTEWVLKSGP  319 (327)
T ss_dssp             HHTTCCSEEEESSHHHHHHHHHCG
T ss_pred             HHcCCCCceeCCCcHHHhccccCC
Confidence            999999999999999999875433

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.89  E-value=5.8e-23  Score=150.57  Aligned_cols=101  Identities=21%  Similarity=0.263  Sum_probs=84.5

Q ss_pred             CccccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc--cCCCCeEEEEeCCC
Q 031899           38 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSG  114 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g  114 (151)
                      ....++++++.+++++ +++|||||++.||..||||||+|+|+..+.        ++...+...  .+++++||+||.+|
T Consensus       120 ~~~~Is~~el~~ll~~~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~--------~~~~~l~~~l~~~kdk~IVvyC~~G  191 (265)
T 4f67_A          120 AGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENFR--------EFPDYVQRNLIDKKDKKIAMFCTGG  191 (265)
T ss_dssp             TTCEECHHHHHHHTTCTTSEEEECSCHHHHHHEEETTCBCCCCSSGG--------GHHHHHHHHTGGGTTSCEEEECSSS
T ss_pred             CCceECHHHHHHHhcCCCeEEEEeCCchHhhcCcCCCCEeCCHHHHH--------hhHHHHHHhhhhCCCCeEEEEeCCC
Confidence            3468999999999875 499999999999999999999999995321        222222222  36789999999999


Q ss_pred             hhHHHHHHHHHHCCCCceeEccccHHHHHhCC
Q 031899          115 KRSMMAATDLLNAGFAGITDIAGGFAAWRQNG  146 (151)
Q Consensus       115 ~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g  146 (151)
                      .||..++..|++.||++|++|+||+.+|.+..
T Consensus       192 ~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~~~~  223 (265)
T 4f67_A          192 IRCEKTTAYMKELGFEHVYQLHDGILNYLESI  223 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEETTHHHHHHHHS
T ss_pred             hHHHHHHHHHHHcCCCCEEEecCHHHHHHHhc
Confidence            99999999999999999999999999998764

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.89  E-value=2.9e-23  Score=138.86  Aligned_cols=108  Identities=19%  Similarity=0.244  Sum_probs=75.6

Q ss_pred             ccCHHHHHH--------HHhC-CCEEEecCChhhHhcCCCCCceeeccccccCC-----CCCCCHHHHHH-----HHhcc
Q 031899           41 SVPVRVAHE--------LLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEE-----VSTRF  101 (151)
Q Consensus        41 ~i~~~~~~~--------~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~-----~~~~~  101 (151)
                      .|+++++.+        ++.+ +++|||||++.||..||||||+|+|+..+...     +....+..+..     .....
T Consensus         2 ~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (142)
T 2ouc_A            2 IIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRI   81 (142)
T ss_dssp             EECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHHHTTSSCHHHHHHTTSCTTHHHHH
T ss_pred             ccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHhhcCCcchhhhCCChhhhHHHhcc
Confidence            478888887        4433 58999999999999999999999999643210     00000010100     00000


Q ss_pred             CCCCeEEEEeCCChhH---------HHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899          102 RKHDEIIVGCQSGKRS---------MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       102 ~~~~~iv~~c~~g~~a---------~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                       ++++||+||++|.++         ..++..|...|| +|++|+||+.+|.++|.|+.
T Consensus        82 -~~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~~g~~~~  137 (142)
T 2ouc_A           82 -FSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHENLC  137 (142)
T ss_dssp             -HHSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTTTCGGGE
T ss_pred             -CCCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCHHHHHHHCHHhh
Confidence             268899999998774         457888999999 99999999999999998763

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.89  E-value=1.2e-22  Score=145.09  Aligned_cols=98  Identities=19%  Similarity=0.256  Sum_probs=78.7

Q ss_pred             CccccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc---c--CCCC
Q 031899           38 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---F--RKHD  105 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~-------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~---~--~~~~  105 (151)
                      ....|+++++.++++.       +++|||||++.||..||||||+|+|+.           +.+...+..   +  ++++
T Consensus        55 ~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~-----------~~l~~~l~~~~~~~~~~~k  123 (216)
T 3op3_A           55 DLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQ-----------EELFNFFLKKPIVPLDTQK  123 (216)
T ss_dssp             SSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSH-----------HHHHHHHTSSCCCCSSTTS
T ss_pred             CCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChH-----------HHHHHHHhhccccccccCC
Confidence            3568999999999875       478999999999999999999999994           334333321   2  2344


Q ss_pred             --eEEEEeC-CChhHHHHHHHHHHC----------CCCceeEccccHHHHHhCC
Q 031899          106 --EIIVGCQ-SGKRSMMAATDLLNA----------GFAGITDIAGGFAAWRQNG  146 (151)
Q Consensus       106 --~iv~~c~-~g~~a~~~~~~L~~~----------G~~~v~~l~GG~~~W~~~g  146 (151)
                        +||+||. +|.|+..++..|+..          ||++|++|+||+.+|.++.
T Consensus       124 ~~~VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~~  177 (216)
T 3op3_A          124 RIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPEY  177 (216)
T ss_dssp             EEEEEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTC
T ss_pred             CCEEEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHhC
Confidence              4999999 999999999999876          8999999999999998863

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.87  E-value=5e-23  Score=142.17  Aligned_cols=107  Identities=22%  Similarity=0.316  Sum_probs=79.8

Q ss_pred             CccccCHHHHHHHHhC--------CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc-------C
Q 031899           38 VPTSVPVRVAHELLQA--------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-------R  102 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~--------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~-------~  102 (151)
                      ....|+++++.++++.        +++|||||+ .||..||||||+|+|+..+...     ...+..+...+       .
T Consensus        29 ~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~~-----~~~l~~l~~~~~~~~~~~~  102 (169)
T 3f4a_A           29 NVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQD-----PEYLRELKHRLLEKQADGR  102 (169)
T ss_dssp             SEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHHC-----HHHHHHHHHHHHHHHHTSS
T ss_pred             CCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhcc-----cccHHHHHHHHHhhccccc
Confidence            3468999999998864        388999999 9999999999999999643211     01122222211       1


Q ss_pred             CCCeEEEEeCCC-hhHHHHHHHHHH----CC--CCceeEccccHHHHHhCCCCCC
Q 031899          103 KHDEIIVGCQSG-KRSMMAATDLLN----AG--FAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       103 ~~~~iv~~c~~g-~~a~~~~~~L~~----~G--~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      .+++||+||.+| .|+..++..|.+    .|  +.+|++|+||+.+|.+++.|.+
T Consensus       103 ~~~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~~~~~  157 (169)
T 3f4a_A          103 GALNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVYGDDE  157 (169)
T ss_dssp             SCEEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHHTTCT
T ss_pred             CCCeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHcCCcc
Confidence            247999999987 888888876654    36  5799999999999999887764

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.86  E-value=2.3e-22  Score=136.58  Aligned_cols=105  Identities=20%  Similarity=0.183  Sum_probs=78.1

Q ss_pred             ccccCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCceeecccccc----C-C-----CCCCCHHHHHHHHhccCCCC
Q 031899           39 PTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRV----G-S-----GMTKNLKFVEEVSTRFRKHD  105 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~---~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~----~-~-----~~~~~~~~~~~~~~~~~~~~  105 (151)
                      ...|+++++.+++++   +++|||||++.||..||||||+|+|+..+.    . .     ..++.... ...+..+++++
T Consensus        15 ~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~   93 (154)
T 1hzm_A           15 AISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGED-RDRFTRRCGTD   93 (154)
T ss_dssp             SSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTSHH-HHHHHHSTTSS
T ss_pred             ccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhcCcccHHHhCCCHHH-HHHHhccCCCC
Confidence            456788888877753   689999999999999999999999986532    0 1     12222222 23334567789


Q ss_pred             eEEEEeCCChhH-------HHHHHHHHHC---CCCceeEccccHHHHHhC
Q 031899          106 EIIVGCQSGKRS-------MMAATDLLNA---GFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       106 ~iv~~c~~g~~a-------~~~~~~L~~~---G~~~v~~l~GG~~~W~~~  145 (151)
                      +||+||.+|.++       ..+++.|+.+   ||+ |++|+||+.+|..+
T Consensus        94 ~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~~  142 (154)
T 1hzm_A           94 TVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCR-AFYLEGGFSKFQAE  142 (154)
T ss_dssp             CEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCC-CEECCCCHHHHHHH
T ss_pred             eEEEEeCCCCccccccccchHHHHHHHHHHHCCCc-eEEEcChHHHHHHH
Confidence            999999998654       4456667654   998 99999999999875

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.85  E-value=3e-21  Score=131.86  Aligned_cols=104  Identities=19%  Similarity=0.255  Sum_probs=77.6

Q ss_pred             CCccccCHHHHHHHHhC---------CCEEEecCChhhHhcCCCCCceeecccccc-----CCCCCCCHHHHHHHH----
Q 031899           37 GVPTSVPVRVAHELLQA---------GHRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVS----   98 (151)
Q Consensus        37 ~~~~~i~~~~~~~~~~~---------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~----   98 (151)
                      .....|+++++.++++.         +++|||||++.||..||||||+|+|+..+.     ..+...    +....    
T Consensus         8 ~~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~~~~~~~~----~~~~~~~~~   83 (158)
T 3tg1_B            8 ASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKIT----VLDLISCRE   83 (158)
T ss_dssp             ---CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHHHTTSSCC----HHHHTCCCC
T ss_pred             CCCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhhhhcCccc----HHhhcCCHH
Confidence            44578999999998862         489999999999999999999999996432     111000    00000    


Q ss_pred             --hcc--CCCCeEEEEeCCC---------hhHHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899           99 --TRF--RKHDEIIVGCQSG---------KRSMMAATDLLNAGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus        99 --~~~--~~~~~iv~~c~~g---------~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~  145 (151)
                        ..+  .++++||+||.+|         .++..++..|+..|| +|++|+|||.+|.++
T Consensus        84 ~~~~~~~~~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~-~v~~L~GG~~~W~~~  142 (158)
T 3tg1_B           84 GKDSFKRIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQN  142 (158)
T ss_dssp             SSCSSTTTTTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTC-CEEEETTHHHHHTSS
T ss_pred             HHHHHhccCCCeEEEEECCCCcccccCcchHHHHHHHHHHhCCC-cEEEeCCcHHHHHHH
Confidence              001  2478999999998         458899999999999 799999999999875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.85  E-value=1e-21  Score=158.21  Aligned_cols=96  Identities=26%  Similarity=0.526  Sum_probs=86.9

Q ss_pred             CCccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChh
Q 031899           37 GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  116 (151)
Q Consensus        37 ~~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~  116 (151)
                      .....++++++.++++++++|||||++.||..||||||+|+|+            +.+......++++++||+||.+|.|
T Consensus       486 ~~~~~i~~~~~~~~~~~~~~~iDvR~~~e~~~ghi~ga~~ip~------------~~l~~~~~~l~~~~~iv~~C~~g~r  553 (588)
T 3ics_A          486 GFVDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIPL------------DELRDRLEEVPVDKDIYITCQLGMR  553 (588)
T ss_dssp             TSCCEECTTTHHHHHHTTCEEEECSCGGGGGGCBCTTEEECCH------------HHHTTCGGGSCSSSCEEEECSSSHH
T ss_pred             cccceecHHHHHHHhcCCCEEEEcCCHHHHhcCCCCCCEECCH------------HHHHHHHhhCCCCCeEEEECCCCcH
Confidence            3456789999999988889999999999999999999999999            4555556678899999999999999


Q ss_pred             HHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899          117 SMMAATDLLNAGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~  145 (151)
                      |..+++.|++.||+ |++|+||+.+|.++
T Consensus       554 s~~a~~~l~~~G~~-v~~l~GG~~~w~~~  581 (588)
T 3ics_A          554 GYVAARMLMEKGYK-VKNVDGGFKLYGTV  581 (588)
T ss_dssp             HHHHHHHHHHTTCC-EEEETTHHHHHHHH
T ss_pred             HHHHHHHHHHcCCc-EEEEcchHHHHHhh
Confidence            99999999999998 99999999999875

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.85  E-value=3.9e-22  Score=159.69  Aligned_cols=95  Identities=27%  Similarity=0.458  Sum_probs=82.5

Q ss_pred             CccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhH
Q 031899           38 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  117 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a  117 (151)
                      ....++++++.++ .++++|||||++.||..+|||||+|+|+.            .+......++++++||+||++|.||
T Consensus       471 ~~~~i~~~~~~~~-~~~~~~iDvR~~~e~~~~~i~ga~~ip~~------------~l~~~~~~~~~~~~iv~~c~~g~rs  537 (565)
T 3ntd_A          471 DATPIHFDQIDNL-SEDQLLLDVRNPGELQNGGLEGAVNIPVD------------ELRDRMHELPKDKEIIIFSQVGLRG  537 (565)
T ss_dssp             SCCEECTTTTTSC-CTTEEEEECSCGGGGGGCCCTTCEECCGG------------GTTTSGGGSCTTSEEEEECSSSHHH
T ss_pred             ccceeeHHHHHhC-CCCcEEEEeCCHHHHhcCCCCCcEECCHH------------HHHHHHhhcCCcCeEEEEeCCchHH
Confidence            3456777777666 56689999999999999999999999994            3444455688999999999999999


Q ss_pred             HHHHHHHHHCCCCceeEccccHHHHHhCC
Q 031899          118 MMAATDLLNAGFAGITDIAGGFAAWRQNG  146 (151)
Q Consensus       118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g  146 (151)
                      ..+++.|++.|| +|++|+||+.+|.++|
T Consensus       538 ~~a~~~l~~~G~-~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          538 NVAYRQLVNNGY-RARNLIGGYRTYKFAS  565 (565)
T ss_dssp             HHHHHHHHHTTC-CEEEETTHHHHHHHTC
T ss_pred             HHHHHHHHHcCC-CEEEEcChHHHHHhCc
Confidence            999999999999 9999999999999876

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.83  E-value=2.8e-22  Score=157.86  Aligned_cols=86  Identities=33%  Similarity=0.475  Sum_probs=0.0

Q ss_pred             HHHHHh-CCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHH
Q 031899           47 AHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL  125 (151)
Q Consensus        47 ~~~~~~-~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~  125 (151)
                      +.++++ ++++|||||++.||..||||||+|+|+.            .+......++++++||+||++|.||..++..|+
T Consensus       379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~iv~~C~~G~rs~~a~~~L~  446 (466)
T 3r2u_A          379 HSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHG------------KLLETDLPFNKNDVIYVHCQSGIRSSIAIGILE  446 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhCCCcEEEEeCCHHHHhcCcCCCCEECCHH------------HHHHHHhhCCCCCeEEEECCCChHHHHHHHHHH
Confidence            444443 3488999999999999999999999994            445555667889999999999999999999999


Q ss_pred             HCCCCceeEccccHHHHHh
Q 031899          126 NAGFAGITDIAGGFAAWRQ  144 (151)
Q Consensus       126 ~~G~~~v~~l~GG~~~W~~  144 (151)
                      +.||++|++|+||+.+|.+
T Consensus       447 ~~G~~~v~~l~GG~~~W~~  465 (466)
T 3r2u_A          447 HKGYHNIINVNEGYKDIQL  465 (466)
T ss_dssp             -------------------
T ss_pred             HcCCCCEEEecChHHHHhh
Confidence            9999999999999999975

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.82  E-value=1.6e-20  Score=135.32  Aligned_cols=92  Identities=17%  Similarity=0.123  Sum_probs=73.1

Q ss_pred             CCCEEEecCChhhHhcCCCCCceeeccc--cccCC---CCCCCHHHHHHHHhccCCCCeEEEEeCCCh-hHHHHHHHHHH
Q 031899           53 AGHRYLDVRTPEEFSAGHATGAINVPYM--YRVGS---GMTKNLKFVEEVSTRFRKHDEIIVGCQSGK-RSMMAATDLLN  126 (151)
Q Consensus        53 ~~~~iiDvR~~~e~~~ghIpgAi~ip~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~-~a~~~~~~L~~  126 (151)
                      ++++|||+|++.||..||||||+|+|+.  .+...   +++++.+.+......++.+++||+||++|. +|.++++.|+ 
T Consensus         5 ~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyc~~g~~~s~~a~~~L~-   83 (230)
T 2eg4_A            5 EDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLREEAELKALEGGLTELFQTLGLRSPVVLYDEGLTSRLCRTAFFLG-   83 (230)
T ss_dssp             TTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCSHHHHHHHHHHHHHHHHHTTCCSSEEEECSSSCHHHHHHHHHHH-
T ss_pred             CCEEEEECCChhhHhhCcCCCCEECCccchhcccCCCCCcCCCHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHHHH-
Confidence            4589999999999999999999999996  33211   111122445666666666899999999988 9999999999 


Q ss_pred             CCCCceeEccccHHHHHhCCCCCC
Q 031899          127 AGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       127 ~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      +||++|++|+||   |.+  +|++
T Consensus        84 ~G~~~v~~l~GG---W~~--~p~~  102 (230)
T 2eg4_A           84 LGGLEVQLWTEG---WEP--YATE  102 (230)
T ss_dssp             HTTCCEEEECSS---CGG--GCCB
T ss_pred             cCCceEEEeCCC---Ccc--Cccc
Confidence            999999999999   877  6763

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.5e-19  Score=136.27  Aligned_cols=112  Identities=14%  Similarity=0.098  Sum_probs=92.5

Q ss_pred             CccccCHHHHHHHHhCC----CEEEecC--------C-hhhH-hcCCCCCceeeccccccC-----CCCCCCHHHHHHHH
Q 031899           38 VPTSVPVRVAHELLQAG----HRYLDVR--------T-PEEF-SAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVS   98 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~~----~~iiDvR--------~-~~e~-~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~   98 (151)
                      ....|||+++.++++++    +++||++        + ..|| .+||||||++++++.+..     ..++++++.+...+
T Consensus        26 ~~~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~~~~ph~LP~~~~f~~~l  105 (327)
T 3utn_X           26 LFDLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDAM  105 (327)
T ss_dssp             SCEEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTTSSSTTCCCCHHHHHHHH
T ss_pred             cccccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCCCCCCCCCcCHHHHHHHH
Confidence            33579999999988632    7889986        2 3566 689999999999875432     35678888888887


Q ss_pred             hc--cCCCCeEEEEeCCC-hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899           99 TR--FRKHDEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus        99 ~~--~~~~~~iv~~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      ..  +.++++||+|++.+ ..|++++++|+.+|+++|++|+|| .+|.++|+|++
T Consensus       106 ~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p~~  159 (327)
T 3utn_X          106 SNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYPLD  159 (327)
T ss_dssp             HHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCCCB
T ss_pred             HHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceeecccH-HHHHHhCCCcc
Confidence            76  57899999999866 568899999999999999999977 89999999985

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.80  E-value=1.6e-19  Score=123.14  Aligned_cols=111  Identities=8%  Similarity=0.055  Sum_probs=73.7

Q ss_pred             CccccCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCceeeccccccCCCCC-----CCHHHHHHHHhccCCCCeEEE
Q 031899           38 VPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT-----KNLKFVEEVSTRFRKHDEIIV  109 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~---~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~iv~  109 (151)
                      ....|+++++.+++++   +++|||||++.||..||||||+|+|...+......     ..++.....+....+...||+
T Consensus        18 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~l~~~~~~~~l~~~lp~~~~~l~~~~~~~~~VVv   97 (157)
T 2gwf_A           18 GSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVL   97 (157)
T ss_dssp             -CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEEE
T ss_pred             CCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHHcCCCCcHHHHHHHcCHHHHHHHHhcCCCCEEEE
Confidence            3467899999988763   58999999999999999999999998643211000     001111222233334556899


Q ss_pred             EeCCChh----HHHHHHHHH----HC----CCC-ceeEccccHHHHHhCCCCC
Q 031899          110 GCQSGKR----SMMAATDLL----NA----GFA-GITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       110 ~c~~g~~----a~~~~~~L~----~~----G~~-~v~~l~GG~~~W~~~g~pv  149 (151)
                      ||.++.+    +..+++.|.    +.    |+. +|++|+|||.+|.+. +|.
T Consensus        98 y~~~~~~~~~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~  149 (157)
T 2gwf_A           98 LDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQ  149 (157)
T ss_dssp             ECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CGG
T ss_pred             EcCCCCccccCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH-Chh
Confidence            9987643    334555554    32    454 399999999999984 664

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.80  E-value=1.7e-19  Score=122.97  Aligned_cols=110  Identities=8%  Similarity=0.067  Sum_probs=74.7

Q ss_pred             CCccccCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCceeeccccccCCC-------CCCCHHHHHHHHhccCCCCe
Q 031899           37 GVPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG-------MTKNLKFVEEVSTRFRKHDE  106 (151)
Q Consensus        37 ~~~~~i~~~~~~~~~~~---~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  106 (151)
                      .....|+++++.++++.   +++|||||++.||..||||||+|+|...+....       .++.  .....+........
T Consensus        12 ~~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~~~~~~~~~~l~~~lp~--~~~~~~~~~~~~~~   89 (157)
T 1whb_A           12 KEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPD--DSKDTWKKRGNVEY   89 (157)
T ss_dssp             CCCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSSCCTTCCHHHHHHSCCT--THHHHHHGGGTSSE
T ss_pred             ccCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHHccCCCcHHHHHHHCCh--HHHHHHHhcCCCCE
Confidence            34567999999988864   578999999999999999999999986432110       0111  11122222233456


Q ss_pred             EEEEeCCChh----HHHHHHHHHH----C----CCC-ceeEccccHHHHHhCCCCC
Q 031899          107 IIVGCQSGKR----SMMAATDLLN----A----GFA-GITDIAGGFAAWRQNGLPT  149 (151)
Q Consensus       107 iv~~c~~g~~----a~~~~~~L~~----~----G~~-~v~~l~GG~~~W~~~g~pv  149 (151)
                      ||+||..+.+    +..+++.|.+    .    ||. +|++|+|||.+|.+. +|+
T Consensus        90 VVvy~~~~~~~~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~  144 (157)
T 1whb_A           90 VVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQ  144 (157)
T ss_dssp             EEEECSSCCGGGCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGG
T ss_pred             EEEECCCCCccccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-Chh
Confidence            9999987643    3455666652    2    454 499999999999985 664

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.79  E-value=1.1e-19  Score=143.18  Aligned_cols=102  Identities=19%  Similarity=0.210  Sum_probs=84.7

Q ss_pred             CCccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChh
Q 031899           37 GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  116 (151)
Q Consensus        37 ~~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~  116 (151)
                      +.+..++++++.++++++ +|||+|++.+|..||||||+|+|+..          .+........+++++||+||+.+. 
T Consensus       270 ~~~~~is~~~l~~~l~~~-~iiD~R~~~~y~~ghIpGA~~i~~~~----------~~~~~~~~l~~~~~~vvvy~~~~~-  337 (474)
T 3tp9_A          270 PERVDLPPERVRAWREGG-VVLDVRPADAFAKRHLAGSLNIPWNK----------SFVTWAGWLLPADRPIHLLAADAI-  337 (474)
T ss_dssp             CEECCCCGGGHHHHHHTS-EEEECSCHHHHHHSEETTCEECCSST----------THHHHHHHHCCSSSCEEEECCTTT-
T ss_pred             CCCceeCHHHHHHHhCCC-EEEECCChHHHhccCCCCeEEECcch----------HHHHHHHhcCCCCCeEEEEECCCc-
Confidence            345689999999998887 99999999999999999999999841          233333333477899999999876 


Q ss_pred             HHHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899          117 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      +.++++.|+.+||++|+++.+|+.+|..+|.|++
T Consensus       338 ~~~~~~~L~~~G~~~v~~~l~G~~~W~~~g~~~~  371 (474)
T 3tp9_A          338 APDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVA  371 (474)
T ss_dssp             HHHHHHHHHHTTCCCEEEEECGGGGTTCCGGGEE
T ss_pred             HHHHHHHHHHcCCcceEEecCcHHHHHhcccccc
Confidence            5669999999999999986679999999887764

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.55  E-value=1.1e-14  Score=114.60  Aligned_cols=80  Identities=21%  Similarity=0.295  Sum_probs=62.0

Q ss_pred             CCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCce
Q 031899           53 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGI  132 (151)
Q Consensus        53 ~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v  132 (151)
                      ++++|||+|++.+|..||||||+|+|+.          ..+..+....++++++||+||+ +.++.++++.|+..||++|
T Consensus       295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~~----------~~~~~~~~~~~~~~~~vvly~~-~~~a~~a~~~L~~~G~~~v  363 (466)
T 3r2u_A          295 TNRLTFDLRSKEAYHGGHIEGTINIPYD----------KNFINQIGWYLNYDQEINLIGD-YHLVSKATHTLQLIGYDDI  363 (466)
T ss_dssp             CCSEEEECSCHHHHHHSCCTTCEECCSS----------TTHHHHHTTTCCTTSCEEEESC-HHHHHHHHHHHHTTTCCCE
T ss_pred             CCeEEEECCCHHHHhhCCCCCcEECCcc----------HHHHHHHHhccCCCCeEEEEEC-CchHHHHHHHhhhhhcccc
Confidence            5689999999999999999999999984          1233333334678999999999 5688999999999999999


Q ss_pred             eE-ccccHHHHH
Q 031899          133 TD-IAGGFAAWR  143 (151)
Q Consensus       133 ~~-l~GG~~~W~  143 (151)
                      +. ++|+...|.
T Consensus       364 ~~~l~g~~~~~~  375 (466)
T 3r2u_A          364 AGYQLPQSKIQT  375 (466)
T ss_dssp             EEEECCC-----
T ss_pred             cccccCcccccH
Confidence            97 677654443

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=98.38  E-value=1.2e-06  Score=58.94  Aligned_cols=84  Identities=18%  Similarity=0.193  Sum_probs=54.9

Q ss_pred             cCHHHHHHHHhCC-CEEEecCChhh------------HhcC-CCCCceeeccccccCCCCCCCHHHHHHHHhcc-CCCCe
Q 031899           42 VPVRVAHELLQAG-HRYLDVRTPEE------------FSAG-HATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDE  106 (151)
Q Consensus        42 i~~~~~~~~~~~~-~~iiDvR~~~e------------~~~g-hIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  106 (151)
                      ++++++..+.+.+ ..|||+|++.|            +... +|+|.+|+|+...     ....+.+..+...+ ..+.+
T Consensus        30 ~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~~-----~~~~~~~~~~~~~l~~~~~p  104 (156)
T 2f46_A           30 LTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTAR-----DIQKHDVETFRQLIGQAEYP  104 (156)
T ss_dssp             CCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCTT-----TCCHHHHHHHHHHHHTSCSS
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCCC-----CCCHHHHHHHHHHHHhCCCC
Confidence            4667777776666 68999997755            3344 5999999998521     12234444444443 34789


Q ss_pred             EEEEeCCChhHHHHHHH-HHHCCCC
Q 031899          107 IIVGCQSGKRSMMAATD-LLNAGFA  130 (151)
Q Consensus       107 iv~~c~~g~~a~~~~~~-L~~~G~~  130 (151)
                      |+++|.+|.|+..++.. |...|..
T Consensus       105 VlvHC~sG~Rs~~l~al~l~~~g~~  129 (156)
T 2f46_A          105 VLAYCRTGTRCSLLWGFRRAAEGMP  129 (156)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCC
Confidence            99999999887754433 2445653

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=95.91  E-value=0.02  Score=37.32  Aligned_cols=84  Identities=14%  Similarity=0.095  Sum_probs=48.8

Q ss_pred             CHHHHHHHHhCC-CEEEecCChhhHhcCCCCCc--eeeccccccCCCCCCCHHHHHHHHhc----cCCCCeEEEEeCCCh
Q 031899           43 PVRVAHELLQAG-HRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSGK  115 (151)
Q Consensus        43 ~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~~c~~g~  115 (151)
                      +++++..+.+.+ ..|||+|+..+......+|-  +++|+.+.    ..++.+.+......    +..+.+|+|+|..|.
T Consensus        24 ~~~~~~~L~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~   99 (150)
T 4erc_A           24 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDF----CPPAPDQIDRFVQIVDEANARGEAVGVHCALGF   99 (150)
T ss_dssp             SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTT----SCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CHHHHHHHHHCCCCEEEEcCCCCCCcccccCCceEEEEecCCC----CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence            466777777777 67999998766444444443  34555322    22233333433332    345789999999984


Q ss_pred             -hHH-HHHH-HHHHCCCC
Q 031899          116 -RSM-MAAT-DLLNAGFA  130 (151)
Q Consensus       116 -~a~-~~~~-~L~~~G~~  130 (151)
                       |+. .++. .+...|++
T Consensus       100 ~Rsg~~~a~~l~~~~~~~  117 (150)
T 4erc_A          100 GRTGTMLACYLVKERGLA  117 (150)
T ss_dssp             HHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHcCCC
Confidence             665 3333 34446663

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}

Probab=95.30  E-value=0.045  Score=35.49  Aligned_cols=83  Identities=13%  Similarity=0.107  Sum_probs=46.1

Q ss_pred             CHHHHHHHHhCC-CEEEecCChhhHhcCCCCC--ceeeccccccCCCCCCCHHHHHHHHhc----cCCCCeEEEEeCCC-
Q 031899           43 PVRVAHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSG-  114 (151)
Q Consensus        43 ~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~~c~~g-  114 (151)
                      +.+....+.+.+ ..|||+|+..++....+++  -.++|+.+.    ..++.+.+......    +..+.+|+|+|..| 
T Consensus        25 ~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~~~~d~----~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~aG~  100 (151)
T 2img_A           25 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDF----CPPAPDQIDRFVQIVDEANARGEAVGVHCALGF  100 (151)
T ss_dssp             SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTT----CCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cHHHHHHHHHCCCCEEEECCCCCCCCHHHHhhCCeEEEeCCCC----CCCCHHHHHHHHHHHHHHHhCCCcEEEECCCCC
Confidence            456666666667 6799999876544333332  355665321    12223333333332    34578999999988 


Q ss_pred             hhHHH-HHHHHHHC-CC
Q 031899          115 KRSMM-AATDLLNA-GF  129 (151)
Q Consensus       115 ~~a~~-~~~~L~~~-G~  129 (151)
                      .|+.. ++..|... |.
T Consensus       101 ~Rsg~~~~~~l~~~~~~  117 (151)
T 2img_A          101 GRTGTMLACYLVKERGL  117 (151)
T ss_dssp             SHHHHHHHHHHHHHHCC
T ss_pred             ChHHHHHHHHHHHHhCc
Confidence            35543 33444333 65

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A

Probab=95.06  E-value=0.057  Score=35.27  Aligned_cols=87  Identities=8%  Similarity=-0.027  Sum_probs=45.7

Q ss_pred             CHHHHHHHHhCC-CEEEecCChhhHhc-------CCCCCceeeccccccCCCCCCCHHHHHHHHhcc-C-CCCeEEEEeC
Q 031899           43 PVRVAHELLQAG-HRYLDVRTPEEFSA-------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-KHDEIIVGCQ  112 (151)
Q Consensus        43 ~~~~~~~~~~~~-~~iiDvR~~~e~~~-------ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~iv~~c~  112 (151)
                      ++.++..+.+.+ ..|||+|+..+...       ..| .-+++|..+...+......+.+......+ . .+.+|+++|.
T Consensus        22 ~~~d~~~L~~~gi~~Vi~l~~~~e~~~~~~~~~~~gi-~~~~ipi~d~~~~~~~~~~~~~~~~~~~i~~~~~~~vlvHC~  100 (151)
T 1xri_A           22 DSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-RLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCK  100 (151)
T ss_dssp             CHHHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTC-EEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECS
T ss_pred             CccCHHHHHHCCCCEEEECCCCCcChhHHHHHHhcCC-eEEecccccccCccccCCHHHHHHHHHHHHcCCCCCEEEECC
Confidence            445555555556 68999998654321       111 13456653211111111223444444432 2 4679999999


Q ss_pred             CCh-hHHH-HHHHHHHCCCC
Q 031899          113 SGK-RSMM-AATDLLNAGFA  130 (151)
Q Consensus       113 ~g~-~a~~-~~~~L~~~G~~  130 (151)
                      .|. |+.. ++..|...|..
T Consensus       101 aG~~RTg~~~a~~l~~~g~~  120 (151)
T 1xri_A          101 RGKHRTGCLVGCLRKLQKWC  120 (151)
T ss_dssp             SSSSHHHHHHHHHHHHTTBC
T ss_pred             CCCCHHHHHHHHHHHHhCCC
Confidence            884 6554 44455666763

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=94.57  E-value=0.0046  Score=41.97  Aligned_cols=24  Identities=17%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             CEEEecCChhhHhcCCCCCceeeccccc
Q 031899           55 HRYLDVRTPEEFSAGHATGAINVPYMYR   82 (151)
Q Consensus        55 ~~iiDvR~~~e~~~ghIpgAi~ip~~~~   82 (151)
                      .++||||.+.||.    |||+|+|...+
T Consensus       122 ~~liDvRe~~E~~----pgA~~iprg~l  145 (168)
T 1v8c_A          122 GAVVRFREVEPLK----VGSLSIPQLRV  145 (168)
T ss_dssp             TEEEEEEEEEEEE----ETTEEEEEEEE
T ss_pred             eEEEECCChhhcC----CCCEEcChhHH
Confidence            3899999999999    99999998643

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*

Probab=94.04  E-value=0.19  Score=34.77  Aligned_cols=83  Identities=20%  Similarity=0.196  Sum_probs=44.2

Q ss_pred             CHHHHHHHHhCC-CEEEecCChhhHhcCCCC---------C--ceeeccccccCCCCCCCHHHHHHHHhc----cCCCCe
Q 031899           43 PVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---------G--AINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDE  106 (151)
Q Consensus        43 ~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIp---------g--Ai~ip~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  106 (151)
                      ..+++..+.+.+ ..|||+|+..|...-.++         |  -+++|+.+.    ..++.+.+......    +..+.+
T Consensus        60 ~~~d~~~L~~~gi~~Vv~l~~~~E~~~~~~~~~~~~~~~~gi~~~~~pi~d~----~~p~~~~~~~~~~~i~~~~~~~~~  135 (212)
T 1fpz_A           60 VQKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADG----GTPDIASCCEIMEELTTCLKNYRK  135 (212)
T ss_dssp             HHHHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCTT----CCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCEEEEcCCHHHHHhcCCccHHHHHHHcCCEEEEecCCCC----CCCCHHHHHHHHHHHHHHHhCCCC
Confidence            455566666656 689999998765432211         1  234454221    11222333333322    335789


Q ss_pred             EEEEeCCC-hhHH-HHHHHHHH--CCC
Q 031899          107 IIVGCQSG-KRSM-MAATDLLN--AGF  129 (151)
Q Consensus       107 iv~~c~~g-~~a~-~~~~~L~~--~G~  129 (151)
                      |+|+|..| .|+. .++..|..  .|.
T Consensus       136 VlVHC~aG~gRTg~~~a~~L~~~~~g~  162 (212)
T 1fpz_A          136 TLIHSYGGLGRSCLVAACLLLYLSDTI  162 (212)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhccCC
Confidence            99999988 3544 34445544  365

>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}

Probab=93.88  E-value=0.13  Score=33.33  Aligned_cols=80  Identities=16%  Similarity=0.174  Sum_probs=40.6

Q ss_pred             HHHHHhCC-CEEEecCChhhHhcCCCCC---ceeeccccccCCCCCCC-HHHHHHHHhccCCCCeEEEEeCCC-hhHHH-
Q 031899           47 AHELLQAG-HRYLDVRTPEEFSAGHATG---AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMM-  119 (151)
Q Consensus        47 ~~~~~~~~-~~iiDvR~~~e~~~ghIpg---Ai~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iv~~c~~g-~~a~~-  119 (151)
                      +..+.+.+ ..|||+|+..+   ...|+   -.++|..+......... .+.++.+......+.+|+++|..| .||.. 
T Consensus        22 ~~~L~~~gi~~Vi~l~~~~~---~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~   98 (145)
T 2nt2_A           22 LEDLQNRGVRYILNVTREID---NFFPGVFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHSKMGVSRSAST   98 (145)
T ss_dssp             HHHHHHTTEEEEEECCSSSC---CSCBTTBEEEECCCCSSTTCCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHH
T ss_pred             HHHHHHCCCCEEEEeCCCCc---cCCCCCcEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHH
Confidence            44444566 57999997533   12232   24566543221111110 011111112233578999999998 67653 


Q ss_pred             -HHHHHHHCCC
Q 031899          120 -AATDLLNAGF  129 (151)
Q Consensus       120 -~~~~L~~~G~  129 (151)
                       ++..+...|+
T Consensus        99 v~ayLm~~~~~  109 (145)
T 2nt2_A           99 VIAYAMKEYGW  109 (145)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhCC
Confidence             3455566665

>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*

Probab=93.76  E-value=0.47  Score=34.84  Aligned_cols=43  Identities=16%  Similarity=0.183  Sum_probs=28.5

Q ss_pred             CccccCHHHHHHHHhCC-CEEEecCChhhHhcC----CCCCc--eeeccc
Q 031899           38 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAG----HATGA--INVPYM   80 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~g----hIpgA--i~ip~~   80 (151)
                      .+..++++++..+.+-+ -.|||.|++.|....    ..+|.  +++|+.
T Consensus        52 ~l~~lt~~d~~~L~~lGI~tVIDLR~~~E~~~~~pd~~~~Gi~~~~iPi~  101 (296)
T 1ywf_A           52 ELSRLDDAGRATLRRLGITDVADLRSSREVARRGPGRVPDGIDVHLLPFP  101 (296)
T ss_dssp             CCTTCCHHHHHHHHHHTCCEEEECCCHHHHHHHCSCCCCTTCEEEECCCC
T ss_pred             CcccCCHHHHHHHHhCCCCEEEECcChhhhhccCCCCCCCCCEEEEecCc
Confidence            34457888888877667 679999998885422    23453  456653

>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}

Probab=93.53  E-value=0.11  Score=34.44  Aligned_cols=79  Identities=23%  Similarity=0.333  Sum_probs=40.9

Q ss_pred             HHHHHhCC-CEEEecCChhhHhcCCCCC--ceeeccccccCCCCCCCHHHHHHHHh----ccCCCCeEEEEeCCC-hhHH
Q 031899           47 AHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEEVST----RFRKHDEIIVGCQSG-KRSM  118 (151)
Q Consensus        47 ~~~~~~~~-~~iiDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iv~~c~~g-~~a~  118 (151)
                      ...+.+.+ ..|||+|+..+..  ...|  -+++|..+....   ...+.+.....    .+..+.+|+++|..| .|+.
T Consensus        30 ~~~L~~~gI~~Vi~l~~~~~~~--~~~~~~~~~ip~~D~~~~---~~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg  104 (164)
T 2hcm_A           30 TELLVRAGITLCVNVSRQQPGP--RAPGVAELRVPVFDDPAE---DLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSA  104 (164)
T ss_dssp             HHHHHHTTEEEEEECSSSCCCC--CCTTCEEEECCCCSCTTS---CCHHHHHHHHHHHHHHHHTTCEEEEEESSSSHHHH
T ss_pred             HHHHHHCCCeEEEEcCCCCCCC--CCCCCEEEEEeCcCCCCc---hHHHHHHHHHHHHHHHHHcCCEEEEECCCCCchHH
Confidence            33444556 5799999865321  1122  244555322111   11112222222    234578999999998 6766


Q ss_pred             H--HHHHHHHCCCC
Q 031899          119 M--AATDLLNAGFA  130 (151)
Q Consensus       119 ~--~~~~L~~~G~~  130 (151)
                      .  ++..+...|+.
T Consensus       105 ~~~~ayLm~~~~~~  118 (164)
T 2hcm_A          105 AVCTAYLMRHRGHS  118 (164)
T ss_dssp             HHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHhCCC
Confidence            3  34556667763

>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}

Probab=93.16  E-value=0.2  Score=33.04  Aligned_cols=81  Identities=11%  Similarity=0.109  Sum_probs=39.7

Q ss_pred             HHHHHhCC-CEEEecCChhhHhcCCCCC--ceeeccccccCCCCCCC-HHHHHHHHhccCCCCeEEEEeCCC-hhHHH--
Q 031899           47 AHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMM--  119 (151)
Q Consensus        47 ~~~~~~~~-~~iiDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iv~~c~~g-~~a~~--  119 (151)
                      +..+.+.+ ..|||+|+..+.   ...|  -+++|+.+......... .+.++.+......+.+|+++|..| .|+..  
T Consensus        26 ~~~L~~~gI~~Vi~l~~~~~~---~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~~  102 (160)
T 1yz4_A           26 LDQLGRNKITHIISIHESPQP---LLQDITYLRIPVADTPEVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIV  102 (160)
T ss_dssp             HHHHHHTTCCEEEEECSSCCC---CCTTCEEEEECCCSCTTSCGGGGHHHHHHHHHHHHHTTCCEEEEETTSSSHHHHHH
T ss_pred             HHHHHHCCCeEEEEccCCCCC---ccCCCeEEEEECCCCCCccHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHHH
Confidence            33344456 679999975431   1122  24566532221111111 111111111223578999999998 67653  


Q ss_pred             HHHHHHHCCCC
Q 031899          120 AATDLLNAGFA  130 (151)
Q Consensus       120 ~~~~L~~~G~~  130 (151)
                      ++..+...|.+
T Consensus       103 ~aylm~~~~~~  113 (160)
T 1yz4_A          103 TAYVMTVTGLG  113 (160)
T ss_dssp             HHHHHHHHCCC
T ss_pred             HHHHHHHcCCC
Confidence            34444566763

>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}

Probab=92.92  E-value=0.43  Score=31.01  Aligned_cols=85  Identities=13%  Similarity=0.048  Sum_probs=42.2

Q ss_pred             HHHHHHhCC-CEEEecCChhhHhc--CCCC-C--ceeeccccccCCCCCCC-HHHHHHHHhccCCCCeEEEEeCCC-hhH
Q 031899           46 VAHELLQAG-HRYLDVRTPEEFSA--GHAT-G--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRS  117 (151)
Q Consensus        46 ~~~~~~~~~-~~iiDvR~~~e~~~--ghIp-g--Ai~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iv~~c~~g-~~a  117 (151)
                      ++..+.+.+ ..|||+|+..|...  -..+ |  -+++|..+......... ....+.+...+..+.+|+++|..| .|+
T Consensus        25 d~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~~~~~~ip~~d~~~~~l~~~~~~~~~~i~~~~~~~~~vlvHC~aG~~RS  104 (154)
T 2r0b_A           25 KLPVLQKHGITHIICIRQNIEANFIKPNFQQLFRYLVLDIADNPVENIIRFFPMTKEFIDGSLQMGGKVLVHGNAGISRS  104 (154)
T ss_dssp             GHHHHHHTTCCEEEEEECGGGTTTSSCCCTTTSEEEEEECCSSTTSCCGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHH
T ss_pred             cHHHHHHcCCeEEEEeCCccccccCCCCCcCceeEEEEECCCCCcccHHHHHHHHHHHHHHHHhcCCCEEEEcCCCCChH
Confidence            344455566 67999998766321  1122 2  24556533221111110 011111111223578999999998 576


Q ss_pred             HH-H-HHHHHHCCCC
Q 031899          118 MM-A-ATDLLNAGFA  130 (151)
Q Consensus       118 ~~-~-~~~L~~~G~~  130 (151)
                      .. + +..+...|.+
T Consensus       105 ~~~~~ayl~~~~~~~  119 (154)
T 2r0b_A          105 AAFVIAYIMETFGMK  119 (154)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcCCC
Confidence            64 3 3444556753

>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A

Probab=92.92  E-value=0.48  Score=30.47  Aligned_cols=81  Identities=17%  Similarity=0.162  Sum_probs=39.2

Q ss_pred             HHHHhCC-CEEEecCChhhH-hcCCCCCceeeccccccCCCCCCCHH-HHHHHHhccCCCCeEEEEeCCC-hhHH-HH-H
Q 031899           48 HELLQAG-HRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLK-FVEEVSTRFRKHDEIIVGCQSG-KRSM-MA-A  121 (151)
Q Consensus        48 ~~~~~~~-~~iiDvR~~~e~-~~ghIpgAi~ip~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iv~~c~~g-~~a~-~~-~  121 (151)
                      ..+.+.+ ..||++++.... ....+ .-.++|+.+.........-. .++.+......+.+|+|+|..| .||. .+ +
T Consensus        23 ~~L~~~gI~~Vi~l~~~~~~~~~~~~-~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~~~~a  101 (144)
T 3ezz_A           23 DMLDALGITALLNVSSDCPNHFEGHY-QYKCIPVEDNHKADISSWFMEAIEYIDAVKDCRGRVLVHSQAGISRSATICLA  101 (144)
T ss_dssp             HHHHHTTCCEEEECSSSCCCTTTTTS-EEEECCCCSSSSCCTTTTHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHH
T ss_pred             HHHHHCCCeEEEEccCCCCccCCCCc-eEEEEEcccCCCCChHHHHHHHHHHHHHHHhcCCeEEEECCCCCChhHHHHHH
Confidence            3444556 679999974221 01111 12456664332222211111 1222222234567999999988 3654 33 3


Q ss_pred             HHHHHCCC
Q 031899          122 TDLLNAGF  129 (151)
Q Consensus       122 ~~L~~~G~  129 (151)
                      ..+...|+
T Consensus       102 ylm~~~~~  109 (144)
T 3ezz_A          102 YLMMKKRV  109 (144)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHcCC
Confidence            44455666

>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}

Probab=92.72  E-value=0.24  Score=32.86  Aligned_cols=80  Identities=18%  Similarity=0.234  Sum_probs=39.4

Q ss_pred             HHHHHhCC-CEEEecCChhhHhcCCCCC--ceeeccccccCCCCCCC-HHHHHHHHhccCCCCeEEEEeCCC-hhHHH--
Q 031899           47 AHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMM--  119 (151)
Q Consensus        47 ~~~~~~~~-~~iiDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iv~~c~~g-~~a~~--  119 (151)
                      ...+.+.+ ..|||+|+..+-.   ..|  -+++|..+......... .+.++.+......+.+|+|+|..| .|+..  
T Consensus        25 ~~~L~~~gI~~Vi~l~~~~~~~---~~~i~~~~ip~~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSg~~~  101 (165)
T 1wrm_A           25 AEQLSKNKVTHILSVHDSARPM---LEGVKYLCIPAADSPSQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVTLV  101 (165)
T ss_dssp             HHHHHHTTEEEEEECSTTCCCC---STTCEEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHH
T ss_pred             HHHHHHCCCcEEEEecCCCCCC---CCCCeEEEEECCCCCCccHHHHHHHHHHHHHHHHHCCCeEEEECCCCCChhHHHH
Confidence            33344456 5799999764311   122  24555532211111110 111111111234578999999998 57664  


Q ss_pred             HHHHHHHCCC
Q 031899          120 AATDLLNAGF  129 (151)
Q Consensus       120 ~~~~L~~~G~  129 (151)
                      ++..+...|+
T Consensus       102 ~ayLm~~~~~  111 (165)
T 1wrm_A          102 IAYIMTVTDF  111 (165)
T ss_dssp             HHHHHHTSSC
T ss_pred             HHHHHHHcCC
Confidence            3444555565

>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}

Probab=92.38  E-value=0.29  Score=33.11  Aligned_cols=46  Identities=17%  Similarity=0.163  Sum_probs=33.0

Q ss_pred             HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899           94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus        94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      +..++....++.+++++|++-..+..++..|+..|+ .+..+.|++.
T Consensus        36 L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~-~~~~lhg~~~   81 (185)
T 2jgn_A           36 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRS   81 (185)
T ss_dssp             HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTC-CEEEEC----
T ss_pred             HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEeCCCC
Confidence            344444444677899999998889999999999998 5888888874

>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*

Probab=92.03  E-value=0.26  Score=32.03  Aligned_cols=82  Identities=12%  Similarity=0.089  Sum_probs=42.5

Q ss_pred             HHHHH-HhCC-CEEEecCChhhHhcCCC---------CCceeeccccccCCCCCCCHHHHHHHHhc----cCCCCeEEEE
Q 031899           46 VAHEL-LQAG-HRYLDVRTPEEFSAGHA---------TGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVG  110 (151)
Q Consensus        46 ~~~~~-~~~~-~~iiDvR~~~e~~~ghI---------pgAi~ip~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~~  110 (151)
                      +..++ .+.+ ..|||+|+..|......         -.-+++|..+..   ..+..+.+......    ...+.+|+|+
T Consensus        19 ~~~~ll~~~gi~~Vi~l~~~~e~~~~~~~~~~~~~~gi~~~~~p~~d~~---~~~~~~~~~~~~~~i~~~~~~~~~vlVH   95 (157)
T 3rgo_A           19 MTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMT---GVPTLANLHKGVQFALKYQALGQCVYVH   95 (157)
T ss_dssp             GHHHHHHHSCEEEEEEESCCTTTTTSSCCHHHHHHTTCEEEEECCCTTT---SSCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             chHHHHHHcCCCEEEECccccccccccCCHHHHHHCCCeEEEecCCCCC---CCChHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            34444 3456 57999998765432110         113455653221   12222333333322    3456899999


Q ss_pred             eCCCh-hHHHH--HHHHHHCCCC
Q 031899          111 CQSGK-RSMMA--ATDLLNAGFA  130 (151)
Q Consensus       111 c~~g~-~a~~~--~~~L~~~G~~  130 (151)
                      |..|. |+..+  +..+...|.+
T Consensus        96 C~~G~~Rsg~~~~a~l~~~~~~~  118 (157)
T 3rgo_A           96 CKAGRSRSATMVAAYLIQVHNWS  118 (157)
T ss_dssp             SSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCChHHHHHHHHHHHHcCCC
Confidence            99985 66643  3444556663

>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}

Probab=91.97  E-value=0.41  Score=32.51  Aligned_cols=78  Identities=15%  Similarity=0.166  Sum_probs=39.9

Q ss_pred             HHHHhCC-CEEEecCChhhHhcCCCCCc--eeeccccccCCCCCCCHHHHHHHHh----ccCCCCeEEEEeCCC-hhHHH
Q 031899           48 HELLQAG-HRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVST----RFRKHDEIIVGCQSG-KRSMM  119 (151)
Q Consensus        48 ~~~~~~~-~~iiDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iv~~c~~g-~~a~~  119 (151)
                      ..+.+.+ ..||++|...+  ....+|-  +++|..+.......   +.+.....    .+..+.+|+|+|..| .||..
T Consensus        39 ~~L~~~gIt~Vi~l~~~~~--~~~~~~i~~~~ipi~D~~~~~~~---~~~~~~~~fI~~~~~~~~~VLVHC~aG~sRS~~  113 (188)
T 2esb_A           39 LMLSSNQITMVINVSVEVV--NTLYEDIQYMQVPVADSPNSRLC---DFFDPIADHIHSVEMKQGRTLLHCAAGVSRSAA  113 (188)
T ss_dssp             HHHHHTTCCEEEECCSSCC--CCCCTTCEEEECCCCSCTTSCGG---GGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHH
T ss_pred             HHHHHCCCcEEEEecCCCC--CcCCCCCEEEEEeCcCCCCccHH---HHHHHHHHHHHHHHHcCCEEEEECCCCCchHHH
Confidence            3344456 67999997432  1112332  34555322111111   12222222    234578999999998 67653


Q ss_pred             --HHHHHHHCCCC
Q 031899          120 --AATDLLNAGFA  130 (151)
Q Consensus       120 --~~~~L~~~G~~  130 (151)
                        ++..+...|.+
T Consensus       114 vv~ayLm~~~~~s  126 (188)
T 2esb_A          114 LCLAYLMKYHAMS  126 (188)
T ss_dssp             HHHHHHHHHSCCC
T ss_pred             HHHHHHHHHcCCC
Confidence              34555666763

>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}

Probab=91.59  E-value=0.48  Score=32.28  Aligned_cols=81  Identities=17%  Similarity=0.149  Sum_probs=39.9

Q ss_pred             HHHHHhCC-CEEEecCChhhHhcCCCCCc--eeeccccccCCCCCCC-HHHHHHHHhccCCCCeEEEEeCCC-hhHHH--
Q 031899           47 AHELLQAG-HRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMM--  119 (151)
Q Consensus        47 ~~~~~~~~-~~iiDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iv~~c~~g-~~a~~--  119 (151)
                      ...+.+.+ ..|||+|+..+  ....+|-  +++|+.+......... ...++.+......+.+|+|+|..| .|+..  
T Consensus        44 ~~~L~~~gI~~Vi~l~~~~~--~~~~~gi~y~~ipi~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSgtvv  121 (190)
T 2wgp_A           44 RHLLQARGITCIVNATIEIP--NFNWPQFEYVKVPLADMPHAPIGLYFDTVADKIHSVSRKHGATLVHCAAGVSRSATLC  121 (190)
T ss_dssp             HHHHHHTTCCEEEECCSSSC--CCCCTTSEEEECCCCSSTTSCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHH
T ss_pred             HHHHHHCCCcEEEEecCCCC--CCCCCCCEEEEEEcccCCCCCHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence            33444556 67999997532  1122332  3455532211111110 111111111223578999999988 67653  


Q ss_pred             HHHHHHHCCC
Q 031899          120 AATDLLNAGF  129 (151)
Q Consensus       120 ~~~~L~~~G~  129 (151)
                      ++..+...|+
T Consensus       122 ~ayLm~~~~~  131 (190)
T 2wgp_A          122 IAYLMKFHNV  131 (190)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHcCC
Confidence            3455566665

>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}

Probab=90.50  E-value=2.4  Score=27.47  Aligned_cols=28  Identities=25%  Similarity=0.344  Sum_probs=18.3

Q ss_pred             CCCeEEEEeCCC-hhHH-HHHHHHHHC-CCC
Q 031899          103 KHDEIIVGCQSG-KRSM-MAATDLLNA-GFA  130 (151)
Q Consensus       103 ~~~~iv~~c~~g-~~a~-~~~~~L~~~-G~~  130 (151)
                      ++.+|+|+|..| .|+. .++..|... |.+
T Consensus       108 ~~~~vlVHC~aG~~RTg~~~a~~L~~~~~~~  138 (167)
T 3s4o_A          108 PPPTIGVHCVAGLGRAPILVALALVEYGNVS  138 (167)
T ss_dssp             CCCEEEEECSSSSSHHHHHHHHHHHHTTCCC
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHhCCCC
Confidence            378999999988 3544 444555554 653

>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}

Probab=90.49  E-value=0.37  Score=31.19  Aligned_cols=28  Identities=21%  Similarity=0.367  Sum_probs=19.5

Q ss_pred             CCCCeEEEEeCCC-hhHHHH--HHHHHHCCC
Q 031899          102 RKHDEIIVGCQSG-KRSMMA--ATDLLNAGF  129 (151)
Q Consensus       102 ~~~~~iv~~c~~g-~~a~~~--~~~L~~~G~  129 (151)
                      ..+.+|+++|..| .|+..+  +..+...|.
T Consensus        81 ~~~~~VlVHC~~G~~RSg~~~~ayl~~~~~~  111 (149)
T 1zzw_A           81 QCGKGLLIHCQAGVSRSATIVIAYLMKHTRM  111 (149)
T ss_dssp             HTTCEEEEECSSSSSHHHHHHHHHHHHHSCC
T ss_pred             HcCCeEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence            3578999999998 676643  344555676

>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}

Probab=90.27  E-value=0.87  Score=29.25  Aligned_cols=76  Identities=13%  Similarity=0.118  Sum_probs=38.1

Q ss_pred             HHHHhCC-CEEEecCChhhHhcCCCCC---ceeeccccccCCCCCCCHHHHHHHHh----ccCCCCeEEEEeCCC-hhHH
Q 031899           48 HELLQAG-HRYLDVRTPEEFSAGHATG---AINVPYMYRVGSGMTKNLKFVEEVST----RFRKHDEIIVGCQSG-KRSM  118 (151)
Q Consensus        48 ~~~~~~~-~~iiDvR~~~e~~~ghIpg---Ai~ip~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iv~~c~~g-~~a~  118 (151)
                      ..+.+.+ ..||+++...+   ...+.   -.++|+.+.......   +.+.....    ....+.+|+|+|..| .||.
T Consensus        23 ~~L~~~gI~~Vl~l~~~~~---~~~~~~~~~~~ipi~D~~~~~~~---~~~~~~~~fi~~~~~~~~~VlVHC~~G~sRS~   96 (144)
T 3s4e_A           23 DTLKKNKVTHILNVAYGVE---NAFLSDFTYKSISILDLPETNIL---SYFPECFEFIEEAKRKDGVVLVHSNAGVSRAA   96 (144)
T ss_dssp             HHHHHTTCCEEEECSSSCC---CCCTTTSEEEECCCCCCTTSCGG---GGHHHHHHHHHHHHHTTCCEEEECSSSSSHHH
T ss_pred             HHHHHcCCCEEEEccCCCC---CCCCCCCEEEEEeccCCCCCchH---HHHHHHHHHHHHHHHcCCeEEEEcCCCCchHH
Confidence            3344556 67999986322   11222   235565432221111   22222222    234577999999988 3654


Q ss_pred             -H-HHHHHHHCCC
Q 031899          119 -M-AATDLLNAGF  129 (151)
Q Consensus       119 -~-~~~~L~~~G~  129 (151)
                       . ++..+...|+
T Consensus        97 ~~v~ayLm~~~~~  109 (144)
T 3s4e_A           97 AIVIGFLMNSEQT  109 (144)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCC
Confidence             3 3444455666

>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A

Probab=90.09  E-value=1.6  Score=29.51  Aligned_cols=86  Identities=20%  Similarity=0.264  Sum_probs=43.8

Q ss_pred             ccccCHHHHHHHHh-CC-CEEEecCChhh----HhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc------cCCCCe
Q 031899           39 PTSVPVRVAHELLQ-AG-HRYLDVRTPEE----FSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR------FRKHDE  106 (151)
Q Consensus        39 ~~~i~~~~~~~~~~-~~-~~iiDvR~~~e----~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  106 (151)
                      |...+.++..+++. .+ ..||+++++.+    +..-+| .-+++|+.    ++..+..+.+..+...      ..++.+
T Consensus        45 P~~~t~~~~~~~L~~~gi~~Iv~l~~~~~~~~~~~~~~i-~~~~~pi~----d~~~~~~~~~~~~~~~i~~~~~~~~~~~  119 (189)
T 3rz2_A           45 PTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGI-HVLDWPFD----DGAPPSNQIVDDWLSLVKIKFREEPGCC  119 (189)
T ss_dssp             CCTTTHHHHHHHHHTTTEEEEEECSCCCSCCHHHHHSSC-EEEECCCC----SSSCCCSHHHHHHHHHHHHHHHHSTTCE
T ss_pred             CCcccHHHHHHHHHHcCCcEEEEeCCCcCCHHHHHHcCc-EEEEecCC----CCCCCCHHHHHHHHHHHHHHHHhCCCCc
Confidence            33455555555554 45 57999997532    222221 12234432    1222222333333332      256789


Q ss_pred             EEEEeCCC-hhHH-HHHHHHHHCCC
Q 031899          107 IIVGCQSG-KRSM-MAATDLLNAGF  129 (151)
Q Consensus       107 iv~~c~~g-~~a~-~~~~~L~~~G~  129 (151)
                      |+|.|..| .|+. .++..|...|+
T Consensus       120 VlVHC~aG~gRSg~~va~~L~~~g~  144 (189)
T 3rz2_A          120 IAVHCVAGLGRAPVLVALALIEGGM  144 (189)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHTTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCC
Confidence            99999988 4544 44555555565

>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}

Probab=89.73  E-value=0.68  Score=32.25  Aligned_cols=28  Identities=25%  Similarity=0.329  Sum_probs=19.5

Q ss_pred             CCCCeEEEEeCCC-hhHHH--HHHHHHHCCC
Q 031899          102 RKHDEIIVGCQSG-KRSMM--AATDLLNAGF  129 (151)
Q Consensus       102 ~~~~~iv~~c~~g-~~a~~--~~~~L~~~G~  129 (151)
                      ..+.+|+|+|..| .|+..  ++..++..|+
T Consensus        81 ~~~~~VLVHC~aG~sRSgtvv~AYLm~~~g~  111 (211)
T 2g6z_A           81 EKGGKVLVHSEAGISRSPTICMAYLMKTKQF  111 (211)
T ss_dssp             HTTCCEEEEESSSSSHHHHHHHHHHHHHHCC
T ss_pred             hcCCeEEEECCCCCCcHHHHHHHHHHHHcCC
Confidence            4578999999998 57653  4455565665

>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*

Probab=89.64  E-value=0.82  Score=30.59  Aligned_cols=26  Identities=23%  Similarity=0.465  Sum_probs=17.8

Q ss_pred             CCeEEEEeCCC-hhHHH-H-HHHHHHCCC
Q 031899          104 HDEIIVGCQSG-KRSMM-A-ATDLLNAGF  129 (151)
Q Consensus       104 ~~~iv~~c~~g-~~a~~-~-~~~L~~~G~  129 (151)
                      +.+|+|+|..| .|+.. + +..+...|+
T Consensus       115 ~~~VlVHC~~G~~RSg~~v~ayLm~~~~~  143 (183)
T 3f81_A          115 NGRVLVHCREGYSRSPTLVIAYLMMRQKM  143 (183)
T ss_dssp             TCCEEEECSSSSSHHHHHHHHHHHHHHCC
T ss_pred             CCeEEEECCCCcchHHHHHHHHHHHHhCC
Confidence            68999999988 36554 3 344456676

>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}

Probab=88.26  E-value=0.84  Score=30.28  Aligned_cols=37  Identities=14%  Similarity=0.395  Sum_probs=31.6

Q ss_pred             CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899          103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus       103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      +..++++||++-..+..++..|...|+ .+..+.|++.
T Consensus        33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~   69 (175)
T 2rb4_A           33 TIGQAIIFCQTRRNAKWLTVEMIQDGH-QVSLLSGELT   69 (175)
T ss_dssp             CCSEEEEECSCHHHHHHHHHHHHTTTC-CEEEECSSCC
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCC
Confidence            356899999998889999999999998 5888888853

>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19

Probab=87.68  E-value=1  Score=29.93  Aligned_cols=45  Identities=16%  Similarity=0.271  Sum_probs=34.5

Q ss_pred             HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899           94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus        94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      +..+.... +..++++||++-..+..++..|...|+ ++..+.|++.
T Consensus        22 L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~hg~~~   66 (172)
T 1t5i_A           22 LFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNF-PAIAIHRGMP   66 (172)
T ss_dssp             HHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSC
T ss_pred             HHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCC-CEEEEECCCC
Confidence            33334333 356799999999899999999999998 5778888864

>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19

Probab=87.21  E-value=1.2  Score=29.21  Aligned_cols=45  Identities=13%  Similarity=0.295  Sum_probs=34.4

Q ss_pred             HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899           94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus        94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      +..+.... +..+++++|++-..+..++..|...|+ .+..+.|++.
T Consensus        21 l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~   65 (165)
T 1fuk_A           21 LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKF-TVSAIYSDLP   65 (165)
T ss_dssp             HHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTC-CEEEECTTSC
T ss_pred             HHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEECCCC
Confidence            33444443 356789999998889999999999998 5788888853

>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}

Probab=87.16  E-value=5.4  Score=27.65  Aligned_cols=28  Identities=29%  Similarity=0.489  Sum_probs=19.5

Q ss_pred             CCCCeEEEEeCCC-hhHHH--HHHHHHHCCC
Q 031899          102 RKHDEIIVGCQSG-KRSMM--AATDLLNAGF  129 (151)
Q Consensus       102 ~~~~~iv~~c~~g-~~a~~--~~~~L~~~G~  129 (151)
                      ..+.+|+|+|..| .||..  ++..+...|+
T Consensus       137 ~~~~~VLVHC~aG~sRS~tvv~aYLm~~~~~  167 (219)
T 2y96_A          137 DDHSKILVHCVMGRSRSATLVLAYLMIHKDM  167 (219)
T ss_dssp             STTCCEEEECSSSSSHHHHHHHHHHHHHSCC
T ss_pred             ccCCeEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence            4578999999998 56553  3445566675

>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}

Probab=87.09  E-value=0.69  Score=29.91  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=19.9

Q ss_pred             CCCeEEEEeCCC-hhHH-H-HHHHHHHCCCC
Q 031899          103 KHDEIIVGCQSG-KRSM-M-AATDLLNAGFA  130 (151)
Q Consensus       103 ~~~~iv~~c~~g-~~a~-~-~~~~L~~~G~~  130 (151)
                      .+.+|+++|..| .|+. . ++..+...|++
T Consensus        84 ~~~~vlVHC~aG~~RSg~~~~ayl~~~~~~~  114 (151)
T 2e0t_A           84 PGGKILVHCAVGVSRSATLVLAYLMLYHHLT  114 (151)
T ss_dssp             TTCCEEEECSSSSHHHHHHHHHHHHHHSCCC
T ss_pred             CCCcEEEECCCCCChHHHHHHHHHHHHcCCC
Confidence            578999999998 6766 3 34455667763

>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}

Probab=86.82  E-value=0.68  Score=30.38  Aligned_cols=37  Identities=22%  Similarity=0.417  Sum_probs=31.2

Q ss_pred             CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899          103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus       103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      +..++++||++-..+..++..|...|+ .+..+.|++.
T Consensus        34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~hg~~~   70 (163)
T 2hjv_A           34 NPDSCIIFCRTKEHVNQLTDELDDLGY-PCDKIHGGMI   70 (163)
T ss_dssp             CCSSEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSC
T ss_pred             CCCcEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCC
Confidence            345789999998889999999999998 5888888863

>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A

Probab=86.71  E-value=4.5  Score=27.64  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=19.0

Q ss_pred             CCCeEEEEeCCC-hhHHH--HHHHHHHCCC
Q 031899          103 KHDEIIVGCQSG-KRSMM--AATDLLNAGF  129 (151)
Q Consensus       103 ~~~~iv~~c~~g-~~a~~--~~~~L~~~G~  129 (151)
                      .+.+|+|+|..| .||..  ++..+...|.
T Consensus       130 ~~~~VLVHC~aG~sRS~tvv~aYLm~~~~~  159 (205)
T 2pq5_A          130 PQGRVLVHCAMGVSRSATLVLAFLMIYENM  159 (205)
T ss_dssp             TTCCEEEECSSSSSHHHHHHHHHHHHHSCC
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHcCC
Confidence            577999999998 56653  3445566675

>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}

Probab=86.20  E-value=2.9  Score=25.94  Aligned_cols=94  Identities=18%  Similarity=0.215  Sum_probs=52.6

Q ss_pred             CCccccCHHHHHHHHhCCCEEE-ecCChhhHhc-CCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCC
Q 031899           37 GVPTSVPVRVAHELLQAGHRYL-DVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG  114 (151)
Q Consensus        37 ~~~~~i~~~~~~~~~~~~~~ii-DvR~~~e~~~-ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g  114 (151)
                      +.+..+|..-++.+.+.++++. |.+...++.. -.+++..-+.+.      .....+..+.+...+..++.|++.++.|
T Consensus        16 Gd~~~lT~~a~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~G~~V~~l~d~G   89 (117)
T 3hh1_A           16 GNLDDMTFRAVNTLRNAGAIACEDTRRTSILLKHFGIEGKRLVSYH------SFNEERAVRQVIELLEEGSDVALVTDAG   89 (117)
T ss_dssp             SCGGGSCHHHHHHHHHCSEEEESCHHHHHHHHHHTTCCSCCEEECC------STTHHHHHHHHHHHHHTTCCEEEEEETT
T ss_pred             CCHHHhhHHHHHHHHhCCEEEEecCchHHHHHHHhCCCCCEEeccC------CccHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3456789988888877887776 4444334332 234543322221      1111233444444455567788887333


Q ss_pred             -----hhHHHHHHHHHHCCCCceeEccc
Q 031899          115 -----KRSMMAATDLLNAGFAGITDIAG  137 (151)
Q Consensus       115 -----~~a~~~~~~L~~~G~~~v~~l~G  137 (151)
                           .+.......+++.|+ .+.++.|
T Consensus        90 dP~i~~~~~~l~~~~~~~gi-~v~viPG  116 (117)
T 3hh1_A           90 TPAISDPGYTMASAAHAAGL-PVVPVPG  116 (117)
T ss_dssp             SCGGGSTTHHHHHHHHHTTC-CEEEEC-
T ss_pred             cCeEeccHHHHHHHHHHCCC-cEEEeCC
Confidence                 344566777788898 4777665

>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}

Probab=85.45  E-value=2.4  Score=28.81  Aligned_cols=29  Identities=17%  Similarity=0.318  Sum_probs=18.5

Q ss_pred             CCCCeEEEEeCCC-hhHHHH-H-HHHHHCCCC
Q 031899          102 RKHDEIIVGCQSG-KRSMMA-A-TDLLNAGFA  130 (151)
Q Consensus       102 ~~~~~iv~~c~~g-~~a~~~-~-~~L~~~G~~  130 (151)
                      ..+.+|+|+|..| .|+..+ + ..+...|..
T Consensus       123 ~~~~~VlVHC~aG~~RSg~~v~~yL~~~~~~~  154 (195)
T 2q05_A          123 QRNEPVLVHCAAGVNRSGAMILAYLMSKNKES  154 (195)
T ss_dssp             HTTCCEEEECSSSSSHHHHHHHHHHHHHCCSS
T ss_pred             HcCCcEEEEcCCCCChHHHHHHHHHHHHhCCC
Confidence            3578999999988 565533 3 333456654

>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}

Probab=85.14  E-value=1.2  Score=29.30  Aligned_cols=29  Identities=7%  Similarity=0.252  Sum_probs=19.4

Q ss_pred             CCCCeEEEEeCCC-hhHH-H-HHHHHHHCCCC
Q 031899          102 RKHDEIIVGCQSG-KRSM-M-AATDLLNAGFA  130 (151)
Q Consensus       102 ~~~~~iv~~c~~g-~~a~-~-~~~~L~~~G~~  130 (151)
                      ..+.+|+|+|..| .||. . ++..+...|++
T Consensus        85 ~~~~~VlVHC~~G~sRS~~vv~ayLm~~~~~s  116 (161)
T 3emu_A           85 QRKEGVLIISGTGVNKAPAIVIAFLMYYQRLS  116 (161)
T ss_dssp             HTTCEEEEEESSSSSHHHHHHHHHHHHHTTCC
T ss_pred             hcCCeEEEEcCCCCcHHHHHHHHHHHHHhCCC
Confidence            3568999999998 4643 3 34555666763

>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}

Probab=84.57  E-value=6.7  Score=28.69  Aligned_cols=107  Identities=11%  Similarity=0.194  Sum_probs=64.5

Q ss_pred             CCccccCHHHHHHHHhCCCEEE-ecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCC-
Q 031899           37 GVPTSVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG-  114 (151)
Q Consensus        37 ~~~~~i~~~~~~~~~~~~~~ii-DvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g-  114 (151)
                      +.+..+|...+..+.+.++++. |.|.........-+++.-+++.      .....+..+.+...+..++.|++.++.| 
T Consensus        26 G~~~~lT~rA~~~L~~aDvI~~edtr~~~~lL~~~~~~~~~i~~~------~~~~~~~~~~li~~l~~G~~Va~lsdaGd   99 (296)
T 3kwp_A           26 GNLDDMTFRAVKTLTAVDLIAAEDTRNTQKLLNHFEITTKQISFH------EHNTQERIPQLIAKLKQGMQIAQVSDAGM   99 (296)
T ss_dssp             SCGGGCCHHHHHHHHHSSEEEESCHHHHHHHHHHTTCCCEEEECS------TTTHHHHHHHHHHHHHTTCEEEEECSSBC
T ss_pred             CCccchhhHHHHHHhHhhhhhhhccccHHHHhhheeeeeeeeehh------hcchhhHhHHHHHHHhcCceEEEeccCCC
Confidence            3456789998888888888888 7675444332111223223331      0111233444555555677888887444 


Q ss_pred             ----hhHHHHHHHHHHCCCCceeEcccc---HHHHHhCCCCCC
Q 031899          115 ----KRSMMAATDLLNAGFAGITDIAGG---FAAWRQNGLPTE  150 (151)
Q Consensus       115 ----~~a~~~~~~L~~~G~~~v~~l~GG---~~~W~~~g~pv~  150 (151)
                          .........+.+.|+ .|.++.|=   ..+....|+|++
T Consensus       100 P~i~~~g~~lv~~~~~~gi-~v~viPGiSA~~aA~a~~Glp~~  141 (296)
T 3kwp_A          100 PSISDPGHELVNACIDAHI-PVVPLPGANAGLTALIASGLAPQ  141 (296)
T ss_dssp             TTSSHHHHHHHHHHHHTTC-CEEECCCCCHHHHHHHHHSSCCS
T ss_pred             CCCCCCchHHHHHHHHcCC-CeeeCCCcccchHHHHhccCCCC
Confidence                455567788888898 58888773   345555677764

>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1

Probab=84.40  E-value=5.9  Score=28.18  Aligned_cols=30  Identities=17%  Similarity=0.249  Sum_probs=23.9

Q ss_pred             CeEEEEeCCCh---hHHHHHHHHHHCCCCceeEc
Q 031899          105 DEIIVGCQSGK---RSMMAATDLLNAGFAGITDI  135 (151)
Q Consensus       105 ~~iv~~c~~g~---~a~~~~~~L~~~G~~~v~~l  135 (151)
                      ++|+++|+.|+   .+-.+|+.|...|++ |.++
T Consensus        59 ~~v~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~   91 (246)
T 1jzt_A           59 KHVFVIAGPGNNGGDGLVCARHLKLFGYN-PVVF   91 (246)
T ss_dssp             CEEEEEECSSHHHHHHHHHHHHHHHTTCC-EEEE
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHCCCe-EEEE
Confidence            58999999874   466799999999994 6543

>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}

Probab=83.98  E-value=2.1  Score=32.04  Aligned_cols=46  Identities=17%  Similarity=0.163  Sum_probs=36.8

Q ss_pred             HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899           94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus        94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      +..+......+.++++||++-..+..++..|...|+ ++..+.|++.
T Consensus       266 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~h~~~~  311 (417)
T 2i4i_A          266 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRS  311 (417)
T ss_dssp             HHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSC
T ss_pred             HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCC-CeeEecCCCC
Confidence            444445555678899999998889999999999998 6888888764

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=82.85  E-value=0.14  Score=31.39  Aligned_cols=23  Identities=0%  Similarity=0.023  Sum_probs=19.6

Q ss_pred             ccccccCccccccccccccccCc
Q 031899            5 GDQQRCDNIGFISSKILSFCPKA   27 (151)
Q Consensus         5 ~~~~~~~~v~~l~gg~~~w~~~~   27 (151)
                      ..+.+|++|.+|.||+.+|....
T Consensus        72 L~~~G~~~v~~l~GG~~~W~~~g   94 (106)
T 3hix_A           72 LRSAGFEHVSELKGGLAAWKAIG   94 (106)
T ss_dssp             HHHTTCSCEEECTTHHHHHHHTT
T ss_pred             HHHcCCcCEEEecCCHHHHHHCC
Confidence            35678999999999999998863

>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A

Probab=82.59  E-value=2.4  Score=28.15  Aligned_cols=28  Identities=18%  Similarity=0.213  Sum_probs=18.8

Q ss_pred             CCCeEEEEeCCC-hhHHH--HHHHHHHCCCC
Q 031899          103 KHDEIIVGCQSG-KRSMM--AATDLLNAGFA  130 (151)
Q Consensus       103 ~~~~iv~~c~~g-~~a~~--~~~~L~~~G~~  130 (151)
                      .+.+|+|+|..| .|+..  ++..+...|..
T Consensus       107 ~~~~VlVHC~aG~~RSg~~v~aylm~~~~~~  137 (176)
T 3cm3_A          107 RNEPVLVHSAAGVNRSGAMILAYLMSKNKES  137 (176)
T ss_dssp             HTCCEEEECSSSSSHHHHHHHHHHHHHCCSS
T ss_pred             CCCcEEEECCcCCCHHHHHHHHHHHHHhCCC
Confidence            467999999988 56543  34445566664

>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}

Probab=82.44  E-value=1.8  Score=29.29  Aligned_cols=36  Identities=17%  Similarity=0.141  Sum_probs=30.4

Q ss_pred             CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899          104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus       104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      ..++++||++-..+..++..|+..|+ .+..+.|++.
T Consensus        54 ~~~~lVF~~~~~~~~~l~~~L~~~g~-~~~~lhg~~~   89 (191)
T 2p6n_A           54 PPPVLIFAEKKADVDAIHEYLLLKGV-EAVAIHGGKD   89 (191)
T ss_dssp             CSCEEEECSCHHHHHHHHHHHHHHTC-CEEEECTTSC
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCC
Confidence            45799999999889999999999998 5778888853

>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}

Probab=82.42  E-value=2.1  Score=30.77  Aligned_cols=30  Identities=10%  Similarity=0.182  Sum_probs=23.6

Q ss_pred             CeEEEEeCCCh---hHHHHHHHHHHCCCCceeEc
Q 031899          105 DEIIVGCQSGK---RSMMAATDLLNAGFAGITDI  135 (151)
Q Consensus       105 ~~iv~~c~~g~---~a~~~~~~L~~~G~~~v~~l  135 (151)
                      .+|+++|+.|+   .+-.+|+.|...||+ |.++
T Consensus        86 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~  118 (259)
T 3d3k_A           86 PTVALLCGPHVKGAQGISCGRHLANHDVQ-VILF  118 (259)
T ss_dssp             CEEEEEECSSHHHHHHHHHHHHHHHTTCE-EEEE
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHCCCe-EEEE
Confidence            48999999874   466799999999994 5543

>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}

Probab=81.97  E-value=2.2  Score=31.54  Aligned_cols=30  Identities=10%  Similarity=0.182  Sum_probs=23.7

Q ss_pred             CeEEEEeCCCh---hHHHHHHHHHHCCCCceeEc
Q 031899          105 DEIIVGCQSGK---RSMMAATDLLNAGFAGITDI  135 (151)
Q Consensus       105 ~~iv~~c~~g~---~a~~~~~~L~~~G~~~v~~l  135 (151)
                      .+|+++|+.|.   .+-.+|+.|...||+ |.++
T Consensus       133 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~-V~V~  165 (306)
T 3d3j_A          133 PTVALLCGPHVKGAQGISCGRHLANHDVQ-VILF  165 (306)
T ss_dssp             CEEEEEECSSHHHHHHHHHHHHHHHTTCE-EEEE
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHCCCc-EEEE
Confidence            58999999874   566799999999994 5543

>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*

Probab=81.45  E-value=3.7  Score=32.46  Aligned_cols=46  Identities=17%  Similarity=0.335  Sum_probs=31.6

Q ss_pred             CCCeEEEEeCCCh---hHHHHHHHHHHCCCCceeEc-ccc---------HHHHHhCCCCC
Q 031899          103 KHDEIIVGCQSGK---RSMMAATDLLNAGFAGITDI-AGG---------FAAWRQNGLPT  149 (151)
Q Consensus       103 ~~~~iv~~c~~g~---~a~~~~~~L~~~G~~~v~~l-~GG---------~~~W~~~g~pv  149 (151)
                      ..++|+++|+.|+   .+-.+++.|...||+ |.++ -+.         ++.|.+.|.++
T Consensus        51 ~~~~v~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~g~~~  109 (502)
T 3rss_A           51 SDYRFLVLCGGGNNGGDGFVVARNLLGVVKD-VLVVFLGKKKTPDCEYNYGLYKKFGGKV  109 (502)
T ss_dssp             TTCEEEEEECSSHHHHHHHHHHHHHTTTSSE-EEEEECCSSCCHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCe-EEEEEECCCCCHHHHHHHHHHHhCCCce
Confidence            4678999999874   456788999999994 5533 221         35566666554

>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A

Probab=81.14  E-value=2.4  Score=30.65  Aligned_cols=30  Identities=23%  Similarity=0.364  Sum_probs=23.8

Q ss_pred             CeEEEEeCCCh---hHHHHHHHHHHCCCCceeEc
Q 031899          105 DEIIVGCQSGK---RSMMAATDLLNAGFAGITDI  135 (151)
Q Consensus       105 ~~iv~~c~~g~---~a~~~~~~L~~~G~~~v~~l  135 (151)
                      ++|+++|+.|+   .+-.+|+.|...|+ +|.++
T Consensus        80 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~-~V~V~  112 (265)
T 2o8n_A           80 PTVLVICGPGNNGGDGLVCARHLKLFGY-QPTIY  112 (265)
T ss_dssp             CEEEEEECSSHHHHHHHHHHHHHHHTTC-EEEEE
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHCCC-cEEEE
Confidence            58999999874   46679999999999 46544

>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*

Probab=80.86  E-value=2.6  Score=33.92  Aligned_cols=37  Identities=24%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899          103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus       103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      ++.++||||.+-..+..++..|...|+ ++..+.||+.
T Consensus       266 ~~~~~IVf~~sr~~~e~la~~L~~~g~-~~~~~h~~l~  302 (591)
T 2v1x_A          266 KGQSGIIYCFSQKDSEQVTVSLQNLGI-HAGAYHANLE  302 (591)
T ss_dssp             TTCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSC
T ss_pred             cCCCeEEEeCcHHHHHHHHHHHHHCCC-CEEEecCCCC
Confidence            567899999999899999999999998 6888999873

>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A

Probab=80.26  E-value=1.5  Score=30.17  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=31.1

Q ss_pred             CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899          103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus       103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      ...++++||++-..+..++..|...|+ .+..+.|++.
T Consensus        30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~   66 (212)
T 3eaq_A           30 SPDRAMVFTRTKAETEEIAQGLLRLGH-PAQALHGDLS   66 (212)
T ss_dssp             CCSCEEEECSSHHHHHHHHHHHHHHTC-CEEEECSSSC
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHHcCC-CEEEEECCCC
Confidence            356899999998888899999999998 5788888853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	1e-34
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	6e-15
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	5e-11
d1uara1	143	c.46.1.2 (A:2-144) Sulfurtransferase {Thermus ther	3e-10
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	3e-10
d1e0ca2	136	c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacte	4e-10
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	4e-10
d1yt8a3	157	c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase	1e-08
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	2e-08
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	2e-08
d1okga2	139	c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtran	4e-08
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	1e-07
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	1e-07
d1yt8a2	101	c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase P	1e-06
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	2e-06
d1urha2	120	c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtran	4e-06
d1okga1	156	c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransf	6e-06
d1rhsa2	144	c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [	2e-05
d1rhsa1	149	c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [Ta	7e-05
d1urha1	147	c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransf	9e-05
d1uara2	141	c.46.1.2 (A:145-285) Sulfurtransferase {Thermus th	2e-04
d1t3ka_	132	c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {	0.003

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  115 bits (288), Expect = 1e-34
 Identities = 79/117 (67%), Positives = 93/117 (79%)

Query: 34  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 93
           E   VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F
Sbjct: 2   EESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDF 61

Query: 94  VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
           +E+VS+ F + D IIVGCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct: 62  LEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 118

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 64.4 bits (156), Expect = 6e-15
 Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 41  SVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 99
            + V  AH+ LQ     L D+R P+ F+ GHA  A ++                      
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTL------------GAFMR 53

Query: 100 RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
                  ++V C  G  S  AA  LL  G+  +  I GGF AW++   P E
Sbjct: 54  DNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE 103

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.9 bits (131), Expect = 5e-11
 Identities = 28/121 (23%), Positives = 39/121 (32%), Gaps = 13/121 (10%)

Query: 33  LEAVGVPTSVPVRVAHELLQ--AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN 90
           +EA     S+       LL   A    LD R  +E+      G I+VP            
Sbjct: 17  VEAERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAEL-------- 68

Query: 91  LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNGLPT 149
              +            +IV C    RS++    LLNAG    +  +  G   W   G   
Sbjct: 69  --VLRVAELAPDPRTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQL 126

Query: 150 E 150
           E
Sbjct: 127 E 127

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 53.0 bits (126), Expect = 3e-10
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 7/112 (6%)

Query: 46  VAHELLQAGHRYLDVRTP-EEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-- 102
           V   L     R L+V      +  GH  GA  + +       + ++    EE +      
Sbjct: 14  VQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERL 73

Query: 103 ---KHDEIIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
                  +++        +  A       G   +  + GG   W + G P  
Sbjct: 74  GISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLT 125

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 52.6 bits (125), Expect = 3e-10
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 47  AHELLQAGHRY--LDVRTPEEFSA---GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 101
           A++LLQ       +DVR P+E  A          ++             L          
Sbjct: 30  AYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGLDP-------- 81

Query: 102 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 151
                ++V C++  R+ +A   L   GF  I +  GG   W + GLP+  
Sbjct: 82  --EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD 129

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 52.2 bits (124), Expect = 4e-10
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 21/135 (15%)

Query: 37  GVPTSV-----PVRVAHELLQA----GHRYLDVRTPEEFSA--------GHATGAINVPY 79
           G P ++     P      LL           D R+P+E+          GH  GA+N  +
Sbjct: 1   GGPVALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEW 60

Query: 80  MYRVGSGMTKN---LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 136
              +                         EI+  CQ+  RS +        G+  +   A
Sbjct: 61  TAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYA 120

Query: 137 GGFAAW-RQNGLPTE 150
           G +  W      P E
Sbjct: 121 GSWGEWGNHPDTPVE 135

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 4e-10
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 14/98 (14%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 117
           +D R P E+  GH  GA+N+     +   +   L     V T  ++   +     S +R 
Sbjct: 48  IDCRYPYEYEGGHIKGAVNLH----MEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERG 103

Query: 118 MMAATDLLNA----------GFAGITDIAGGFAAWRQN 145
                 +              +  +  + GG+  +   
Sbjct: 104 PRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK 141

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.2 bits (116), Expect = 1e-08
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 43  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 102
           P  +A  L + G R LD      ++  H  GA  V                 ++   R  
Sbjct: 9   PTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQL------------KQALERLG 56

Query: 103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
             +  ++ C S   +  A  ++       +  + GG +AW   GLPTE
Sbjct: 57  TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTE 104

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 48.2 bits (113), Expect = 2e-08
 Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 8/113 (7%)

Query: 46  VAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY--------MYRVGSGMTKNLKFVEEV 97
           +   L       +D+ +   ++ GH  GA  V                   + L+ +   
Sbjct: 16  LQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGE 75

Query: 98  STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
                +   ++   + G  +      L   G      + GG  AW     P  
Sbjct: 76  LGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLS 128

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-08
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 21/128 (16%)

Query: 38  VPTSVPVRVAHELLQAGH---RYLDVRTPEEFSAGHATGAINVPY----MYRVGSGMTKN 90
           +  S  V   +E L+ G+     +D R  E + + H   AINV      + R+  G    
Sbjct: 14  MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPV 73

Query: 91  LKFVE-----EVSTRFRKHDEIIVGCQSGKRS---------MMAATDLLNAGFAGITDIA 136
                     +  TR    D +++  +S             +      L         + 
Sbjct: 74  RALFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLE 133

Query: 137 GGFAAWRQ 144
           GGF+ ++ 
Sbjct: 134 GGFSKFQA 141

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 47.1 bits (111), Expect = 4e-08
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 23/116 (19%)

Query: 58  LDVRTPEEFS-----------AGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTRFR--- 102
            D R+ + F+            GH  GA N+PY   + + G  K L+  EE+        
Sbjct: 16  TDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVV 75

Query: 103 -------KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW-RQNGLPTE 150
                       +  C SG  + +    + + G        G ++ +      P  
Sbjct: 76  QGAGDAADLSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIM 131

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 1e-07
 Identities = 8/126 (6%), Positives = 33/126 (26%), Gaps = 21/126 (16%)

Query: 41  SVPVRVAHELLQAGHRY---LDVRTPEEFSAGHATGAINVPY-----MYRVGSGMTKNLK 92
           ++  +  + ++   +     +D R  +++       +++VP                   
Sbjct: 2   AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPD 61

Query: 93  FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA-------------GFAGITDIAGGF 139
             ++   +    + +++         +     L +                    + GG+
Sbjct: 62  DSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGY 121

Query: 140 AAWRQN 145
             W   
Sbjct: 122 ENWLLC 127

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 1e-07
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 15/99 (15%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 116
           +D R P E+  GH   A+N+P      S + K+            K   +I  C+ S +R
Sbjct: 48  VDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCS----LDKRVILIFHCEFSSER 103

Query: 117 SMMAATDLLNA----------GFAGITDIAGGFAAWRQN 145
                  +              +  +  + GG+  +   
Sbjct: 104 GPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ 142

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.7 bits (99), Expect = 1e-06
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 42  VPVRVAHELLQA-----GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE 96
           + VR  H++  A         LDVR  + F+  H   A N+P          +  +    
Sbjct: 1   IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRR--- 57

Query: 97  VSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 146
                     I V       + +AA  L + G++ +  + GG + WR  G
Sbjct: 58  -------DTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAG 100

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.7 bits (99), Expect = 2e-06
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 41  SVPVRVAHELLQAGHR---YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 97
            + +    +      R    LDVRTPEE+ AGH  G+ + P                E  
Sbjct: 24  RLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQL----------VQETD 73

Query: 98  STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR-QNGLPTEP 151
                +   +++    G R+ M+A+ L   G+  +  + G   A   + G  + P
Sbjct: 74  HVASVRGARLVLVDDDGVRANMSASWLAQMGW-QVAVLDGLSEADFSERGAWSAP 127

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 41.5 bits (96), Expect = 4e-06
 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 17/116 (14%)

Query: 44  VRVAHELLQAGHRY----LDVRTPEEFSA-------GHATGAI-NVPYMYRVGSGMTKNL 91
           V    ++L A H      +D R    F+A       G   G I     +          L
Sbjct: 5   VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGEL 64

Query: 92  KFVEEVSTRFR-----KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 142
           K  +E+   F          IIV C SG  + +    L       +    G ++ W
Sbjct: 65  KTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 120

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 41.6 bits (97), Expect = 6e-06
 Identities = 19/114 (16%), Positives = 29/114 (25%), Gaps = 19/114 (16%)

Query: 56  RYLDVRT--------PEEFSAGHATGAINV--------PYMYRVGSGMTKNLKFVEEVST 99
           R +D R           +++  H   AI                            +   
Sbjct: 23  RIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCM 82

Query: 100 RFRKHDE---IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
                 E   +    + G         +LN+  A    I GGF A +  GL  E
Sbjct: 83  ANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQACKAAGLEME 136

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 16/121 (13%), Positives = 27/121 (22%), Gaps = 15/121 (12%)

Query: 46  VAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNL----------KFVE 95
           V   L     + +D R    +                +   +              K  E
Sbjct: 18  VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPE 77

Query: 96  EVSTRFR-----KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
           E+   F          +I  C+ G  +   A      G   +    G +  W     P  
Sbjct: 78  ELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPET 137

Query: 151 P 151
            
Sbjct: 138 W 138

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (88), Expect = 7e-05
 Identities = 22/126 (17%), Positives = 32/126 (25%), Gaps = 23/126 (18%)

Query: 48  HELLQAGH-----RYLDVRTP--------EEFSAGHATGAINVPYM--YRVGSGMTKNLK 92
            E ++AG      R LD            +E+   H  GA            S     L 
Sbjct: 16  AESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLP 75

Query: 93  FVEEVSTRFR-----KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAWRQ 144
                +             ++V       S  A          G   ++   GGF  W +
Sbjct: 76  SEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLK 135

Query: 145 NGLPTE 150
            G P  
Sbjct: 136 EGHPVT 141

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 9e-05
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 22/115 (19%)

Query: 56  RYLDVRTP----------EEFSAGHATGAINVPYM--YRVGSGMTKNLKFVEEVSTRFRK 103
           + +D R            +E+  GH  GA+           S +   L   E  +   R+
Sbjct: 20  QIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRE 79

Query: 104 H-----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAWRQNGLPTE 150
                   +IV  +       A          G+  ++   GG A W+++ L  E
Sbjct: 80  LGVNQDKHLIVYDEG--NLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLE 132

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 37.1 bits (85), Expect = 2e-04
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 21/114 (18%)

Query: 58  LDVRTPEEFS----------------AGHATGAINVP---YMYRVGSGMTKNLKFVEEVS 98
           +DVR+P+E+                 AGH  GA N+P    +   G+  +          
Sbjct: 24  VDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEP 83

Query: 99  TRFRKHDEIIVGCQSGKRSMMAATDL-LNAGFAGITDIAGGFAAW-RQNGLPTE 150
               K  +I+V C+  +RS  +   L    G+  + +  G +  W    G+P  
Sbjct: 84  LGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIA 137

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.6 bits (75), Expect = 0.003
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 1/94 (1%)

Query: 58  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVG-CQSGKR 116
           +DVR  E    GH  G+++                  ++ +  F      + G   + + 
Sbjct: 27  IDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDKDTLVFHSALSQVRGPTCARRL 86

Query: 117 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 150
                    + G   I  +  GF  W  +G P  
Sbjct: 87  VNYLDEKKEDTGIKNIMILERGFNGWEASGKPVC 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.98
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.96
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.96
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.96
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.95
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.94
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.94
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.94
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.94
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.94
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.94
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.93
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.92
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.91
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.91
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.91
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.79
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.76
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	96.1
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	95.4
d1ywfa1	272	Phosphotyrosine protein phosphatase PtpB {Mycobact	94.38
d1t5la2	181	Nucleotide excision repair enzyme UvrB {Bacillus c	93.44
d1jr6a_	138	HCV helicase domain {Human hepatitis C virus (HCV)	92.66
d1fpza_	176	Kinase associated phosphatase (kap) {Human (Homo s	92.33
d1m3ga_	145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	91.14
d1hv8a2	155	Putative DEAD box RNA helicase {Archaeon Methanoco	90.21
d1t5ia_	168	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	90.18
d1fuka_	162	Initiation factor 4a {Baker's yeast (Saccharomyces	89.82
d1s2ma2	171	Putative ATP-dependent RNA helicase DHH1 {Baker's	89.37
d1oywa3	200	RecQ helicase domain {Escherichia coli [TaxId: 562	86.5
d2j0sa2	168	Probable ATP-dependent RNA helicase DDX48 {Human (	86.23
d1a1va2	299	HCV helicase domain {Human hepatitis C virus (HCV)	86.17
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	84.11
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	83.83
d2rb4a1	168	ATP-dependent RNA helicase DDX25 {Human (Homo sapi	83.69
d1jl3a_	137	Arsenate reductase ArsC {Bacillus subtilis [TaxId:	83.65
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	83.02
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	82.2
d1u9ya2	129	Phosphoribosylpyrophosphate synthetase {Methanocal	82.17
d1s4da_	265	Uroporphyrin-III C-methyltransferase (SUMT, UROM,	80.67
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	80.12

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.98  E-value=6.5e-33  Score=180.12  Aligned_cols=115  Identities=68%  Similarity=1.123  Sum_probs=104.6

Q ss_pred             CCccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChh
Q 031899           37 GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  116 (151)
Q Consensus        37 ~~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~  116 (151)
                      ..|..++++.+.++++++.+|||||++.||..||||||+|+|+.............++......++++++||+||++|.|
T Consensus         5 ~~p~~i~~~~a~~l~~~g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~C~~G~r   84 (119)
T d1tq1a_           5 RVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGGR   84 (119)
T ss_dssp             CCCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCSH
T ss_pred             cCCCccCHHHHHHHHHCcCEEEECCCHHHHHcCCCCCccchhhcccccccccccHHHHHHHHHhcCCCcEEEEEcCCcCc
Confidence            56778999999999998999999999999999999999999997666666666777888888888999999999999999


Q ss_pred             HHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          117 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      |..++..|.+.||+||++|+||+.+|.++|+|++.
T Consensus        85 s~~a~~~L~~~G~~nv~~l~GG~~~W~~~g~P~ea  119 (119)
T d1tq1a_          85 SIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA  119 (119)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC-
T ss_pred             HHHHHHHHHhcccCCeEEecChHHHHHHCCCCccC
Confidence            99999999999999999999999999999999973

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.3e-29  Score=161.70  Aligned_cols=99  Identities=30%  Similarity=0.500  Sum_probs=90.1

Q ss_pred             ccccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChhH
Q 031899           39 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  117 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a  117 (151)
                      .+.|+++++.+++++ +++|||||++.||..||||||+|+|.            +.+......++++++||+||.+|.||
T Consensus         4 ~~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~rs   71 (108)
T d1gmxa_           4 FECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTN------------DTLGAFMRDNDFDTPVMVMCYHGNSS   71 (108)
T ss_dssp             CEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCH------------HHHHHHHHHSCTTSCEEEECSSSSHH
T ss_pred             CCEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCCcccccc------------hhHHHHhhhccccCcccccCCCChHH
Confidence            467899999988865 49999999999999999999999999            66777788889999999999999999


Q ss_pred             HHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899          118 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       118 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      ..++..|++.||+||++|+||+.+|.++ +|++
T Consensus        72 ~~~a~~L~~~G~~~v~~l~GG~~~W~~~-~p~e  103 (108)
T d1gmxa_          72 KGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE  103 (108)
T ss_dssp             HHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGG
T ss_pred             HHHHHHHHHcCCCCEEEEcChHHHHHHc-CCCc
Confidence            9999999999999999999999999754 7865

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.96  E-value=4.1e-29  Score=165.41  Aligned_cols=112  Identities=21%  Similarity=0.340  Sum_probs=95.9

Q ss_pred             ccccCHHHHHHHHhC-CCEEEecCChhhHh--------cCCCCCceeeccccccC-CCCCCCHHHHHHHHhc--cCCCCe
Q 031899           39 PTSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDE  106 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~--------~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~  106 (151)
                      ...++.+++.+.+.+ +++|||+|++.||.        .||||||+|+|+..+.. ++.+++.+.+...+..  ++++++
T Consensus        11 ~~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~~   90 (136)
T d1e0ca2          11 EPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKE   90 (136)
T ss_dssp             TTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTSE
T ss_pred             CceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhccccccchhHHHhhhhhhcccCCCCc
Confidence            357899999888865 58999999999996        79999999999976653 4555556667776665  578999


Q ss_pred             EEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHHh-CCCCCC
Q 031899          107 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-NGLPTE  150 (151)
Q Consensus       107 iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~-~g~pv~  150 (151)
                      ||+||++|.+|+.+++.|+.+||+||++|+|||.+|.. .++|||
T Consensus        91 vV~yC~~G~~a~~~~~~l~~~G~~~v~~ydGg~~eW~~~~~~PvE  135 (136)
T d1e0ca2          91 IVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE  135 (136)
T ss_dssp             EEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             eEEeCCChHHHHHHHHHHHHcCCCCcEEecCCHHHHhcCCCCCCc
Confidence            99999999999999999999999999999999999977 599987

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=1e-28  Score=163.55  Aligned_cols=101  Identities=26%  Similarity=0.417  Sum_probs=88.1

Q ss_pred             ccccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEEeCCC
Q 031899           39 PTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSG  114 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~~--~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~c~~g  114 (151)
                      ...|+++++.++++++  ++|||||++.||..||||||+|+|..            .+......+  +++++||+||.+|
T Consensus        23 ~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGAi~ip~~------------~l~~~~~~l~~~~~~~iV~~C~~g   90 (136)
T d1yt8a1          23 TPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGA------------ELVLRVAELAPDPRTRVIVNCAGR   90 (136)
T ss_dssp             CCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTCEECCGG------------GHHHHHHHHCCSTTSEEEEECSSS
T ss_pred             CCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCchhhhhh------------HHHHHhhcccccccceEEEEcCCC
Confidence            4579999999988644  78999999999999999999999984            344444443  4678999999999


Q ss_pred             hhHHHHHHHHHHCCCCc-eeEccccHHHHHhCCCCCCC
Q 031899          115 KRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       115 ~~a~~~~~~L~~~G~~~-v~~l~GG~~~W~~~g~pv~~  151 (151)
                      .+|..++..|++.||+| |++|.||+.+|..+|+|+++
T Consensus        91 ~rs~~aa~~L~~~G~~~~V~~L~GG~~~W~~~G~pve~  128 (136)
T d1yt8a1          91 TRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLEH  128 (136)
T ss_dssp             HHHHHHHHHHHHTTCSSCEEEETTHHHHHHHTTCCCBC
T ss_pred             CchHHHHHHHHHcCCCceEEEeCCcHHHHHHCCCCcee
Confidence            99999999999999986 99999999999999999974

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=9.5e-29  Score=167.43  Aligned_cols=102  Identities=21%  Similarity=0.320  Sum_probs=92.5

Q ss_pred             CccccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChh
Q 031899           38 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  116 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~  116 (151)
                      .+..|+++++.++++++ .+|||||++.||..||||||+|+|.            ..+......++++++||+||.+|.+
T Consensus         3 ~~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIpga~~~~~------------~~~~~~~~~~~~~~~vv~~c~~g~r   70 (157)
T d1yt8a3           3 RADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLR------------SQLKQALERLGTAERYVLTCGSSLL   70 (157)
T ss_dssp             CCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCG------------GGHHHHHHHHCCCSEEEEECSSSHH
T ss_pred             CCCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccccceeccc------------ccccccccccccCcceeeccCCcch
Confidence            45679999999998765 8999999999999999999999999            4456666677889999999999999


Q ss_pred             HHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          117 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      |..++..|+..||++|++|+||+.+|.++|+|+++
T Consensus        71 s~~~a~~l~~~G~~~v~~L~GG~~~W~~aGlp~~~  105 (157)
T d1yt8a3          71 ARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTED  105 (157)
T ss_dssp             HHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBC
T ss_pred             HHHHHHHHhcccCceEEEecCCHHHHhhCCCCCcC
Confidence            99999999999999999999999999999999874

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=6.1e-27  Score=155.66  Aligned_cols=100  Identities=27%  Similarity=0.509  Sum_probs=88.3

Q ss_pred             hCCCEEEecCChhhHh----------------cCCCCCceeecccccc-CCCCCCCHHHHHHHHhc--cCCCCeEEEEeC
Q 031899           52 QAGHRYLDVRTPEEFS----------------AGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDEIIVGCQ  112 (151)
Q Consensus        52 ~~~~~iiDvR~~~e~~----------------~ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~  112 (151)
                      +.+.+|||+|++.||.                .||||||+|+|+..+. .++.+.+++.++..+..  ++++++||+||+
T Consensus        18 ~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~~~~~~~~~~~~~~~~~gi~~d~~vV~yC~   97 (141)
T d1uara2          18 EGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCR   97 (141)
T ss_dssp             TTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGGTCCTTSEEEEECS
T ss_pred             CCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccccccccHHHHHHHHHHhCCCCCCeEEEEec
Confidence            4568999999999996                7999999999998765 45678888888888776  578999999999


Q ss_pred             CChhHHHHHHHHHH-CCCCceeEccccHHHHHh-CCCCCCC
Q 031899          113 SGKRSMMAATDLLN-AGFAGITDIAGGFAAWRQ-NGLPTEP  151 (151)
Q Consensus       113 ~g~~a~~~~~~L~~-~G~~~v~~l~GG~~~W~~-~g~pv~~  151 (151)
                      +|.+|+.+++.|+. +||++|++|+|||.+|.+ .++||++
T Consensus        98 ~G~~As~~~~~l~~~~G~~~v~~ydGs~~eW~~~~~~Pv~~  138 (141)
T d1uara2          98 IAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAK  138 (141)
T ss_dssp             SHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBC
T ss_pred             CcchHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCccc
Confidence            99999999999986 799999999999999977 6999975

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.94  E-value=1.4e-27  Score=158.15  Aligned_cols=101  Identities=25%  Similarity=0.399  Sum_probs=87.3

Q ss_pred             CccccCHHHHHHHHhC--CCEEEecCChhhHhcCC---CCCceeeccccccCCCCCCCHHHHHHHH--hccCCCCeEEEE
Q 031899           38 VPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGH---ATGAINVPYMYRVGSGMTKNLKFVEEVS--TRFRKHDEIIVG  110 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~--~~~iiDvR~~~e~~~gh---IpgAi~ip~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iv~~  110 (151)
                      ....|+++++.+++++  +++|||||++.||..+|   |+||+|+|..            .+....  ..++++++||||
T Consensus        21 ~~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~------------~l~~~~~~~~~~~~~~ivvy   88 (137)
T d1qxna_          21 DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRG------------KLEPLLAKSGLDPEKPVVVF   88 (137)
T ss_dssp             SSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTT------------TSHHHHHHHCCCTTSCEEEE
T ss_pred             cCCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccccccccCCcc------------cccccccccccCcccceeee
Confidence            3468999999999854  49999999999999999   6778999984            223333  236889999999


Q ss_pred             eCCChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCC
Q 031899          111 CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       111 c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      |.+|.||..++..|++.||+||++|+||+.+|.++|+|++
T Consensus        89 C~~G~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~P~~  128 (137)
T d1qxna_          89 CKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSL  128 (137)
T ss_dssp             CCSSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEE
T ss_pred             ecccchHHHHHHHHHHcCCCcEEEecCHHHHHHHcCCCCC
Confidence            9999999999999999999999999999999999999985

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=4.5e-27  Score=157.43  Aligned_cols=111  Identities=19%  Similarity=0.200  Sum_probs=93.9

Q ss_pred             ccCHHHHHHHHhC-CCEEEecC----------ChhhHhcCCCCCceeeccccccC-----CCCCCCHHHHHHHHhc--cC
Q 031899           41 SVPVRVAHELLQA-GHRYLDVR----------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FR  102 (151)
Q Consensus        41 ~i~~~~~~~~~~~-~~~iiDvR----------~~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--~~  102 (151)
                      .++++.+.+.+++ +++|||+|          ..++|..||||||+|+++..+..     ..++++.+.+...+..  +.
T Consensus         4 lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~Gi~   83 (147)
T d1urha1           4 FVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGVN   83 (147)
T ss_dssp             EECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTCC
T ss_pred             cCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccccccccccCCCHHHHHHHHHHhCcC
Confidence            5789999887764 59999999          34689999999999999876542     2456677888887776  57


Q ss_pred             CCCeEEEEeCC-ChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          103 KHDEIIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       103 ~~~~iv~~c~~-g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      ++++||+||.. +..|+++++.|+.+||+||++|+||+.+|.++|+|+++
T Consensus        84 ~~~~vVvY~~~~~~~A~r~~~~L~~~G~~~V~vLdGG~~~W~~~g~pv~~  133 (147)
T d1urha1          84 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEE  133 (147)
T ss_dssp             TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBB
T ss_pred             CCCeEEEEeCCCcccchhHHHHHHhhcccceEEeCChHHHHHHcCCCccC
Confidence            88999999975 46788999999999999999999999999999999973

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.1e-26  Score=155.88  Aligned_cols=113  Identities=18%  Similarity=0.175  Sum_probs=94.7

Q ss_pred             ccccCHHHHHHHHhC-----CCEEEecC--------ChhhHhcCCCCCceeeccccccC-----CCCCCCHHHHHHHHhc
Q 031899           39 PTSVPVRVAHELLQA-----GHRYLDVR--------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR  100 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-----~~~iiDvR--------~~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~  100 (151)
                      +..|+++++.+.+++     +++|||+|        ..++|..||||||+|+++..+..     ...+...+.+...+..
T Consensus         7 ~~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   86 (149)
T d1rhsa1           7 RALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGS   86 (149)
T ss_dssp             CSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhcccccchhhhhhhhHHHHHHHhh
Confidence            467899999988863     58999999        46799999999999999875542     2455666777777665


Q ss_pred             --cCCCCeEEEEeCC---ChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          101 --FRKHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       101 --~~~~~~iv~~c~~---g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                        ++++++||+||++   +..+.++++.|+.+||+||++|+||+.+|+++|+||++
T Consensus        87 ~Gi~~~~~vVvy~~~~~~~~~a~r~~w~L~~~G~~~V~vLdGG~~~W~~~G~pv~~  142 (149)
T d1rhsa1          87 LGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTS  142 (149)
T ss_dssp             TTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             hhccCCceeEEeeccCCcchhhhHHHHHHHHcCCCceEEeCCcHHHHHHCcCcccC
Confidence              5789999999975   36788999999999999999999999999999999974

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=7.1e-27  Score=147.13  Aligned_cols=95  Identities=24%  Similarity=0.312  Sum_probs=80.3

Q ss_pred             ccCHHHHHHHHh--CCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc--cCCCCeEEEEeCCChh
Q 031899           41 SVPVRVAHELLQ--AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKR  116 (151)
Q Consensus        41 ~i~~~~~~~~~~--~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~~  116 (151)
                      ..|.+++++++.  ++++|||||++.||..||||||+|+|..            .+......  ..++++||+||.++.+
T Consensus         3 v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAi~~~~~------------~~~~~~~~~~~~~~~~vv~~~~~g~~   70 (101)
T d1yt8a2           3 VRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS------------RLELEIHARVPRRDTPITVYDDGEGL   70 (101)
T ss_dssp             EECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGG------------GHHHHHHHHSCCTTSCEEEECSSSSH
T ss_pred             cCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCccccccc------------chhhhhhhcccccCceeeeccchhhh
Confidence            468888887663  3589999999999999999999999984            22332222  3467899999999999


Q ss_pred             HHHHHHHHHHCCCCceeEccccHHHHHhCCC
Q 031899          117 SMMAATDLLNAGFAGITDIAGGFAAWRQNGL  147 (151)
Q Consensus       117 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~  147 (151)
                      |..++..|+++||+||++|+||+.+|+++|.
T Consensus        71 s~~~~~~l~~~G~~nV~~l~GG~~~W~~aGg  101 (101)
T d1yt8a2          71 APVAAQRLHDLGYSDVALLDGGLSGWRNAGG  101 (101)
T ss_dssp             HHHHHHHHHHTTCSSEEEETTHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCcEEEeCChHHHHHHCcC
Confidence            9999999999999999999999999999874

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2e-27  Score=158.53  Aligned_cols=112  Identities=16%  Similarity=0.196  Sum_probs=95.1

Q ss_pred             cccCHHHHHHHHhC-CCEEEecCC-hhhHhcCCCCCceeeccccccC---CCCCCCHHHHHHHHhcc--CCCCeEEEEeC
Q 031899           40 TSVPVRVAHELLQA-GHRYLDVRT-PEEFSAGHATGAINVPYMYRVG---SGMTKNLKFVEEVSTRF--RKHDEIIVGCQ  112 (151)
Q Consensus        40 ~~i~~~~~~~~~~~-~~~iiDvR~-~~e~~~ghIpgAi~ip~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~iv~~c~  112 (151)
                      ..|+++++.+.+.+ +++|||+|. +.+|..||||||+|+++.....   ..++.+.+.++..+..+  .++++||+||+
T Consensus         7 ~lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIPgAi~~~~~~~~~~~~~~~l~~~~~l~~~~~~~Gi~~~~~iVvy~~   86 (143)
T d1uara1           7 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLYGD   86 (143)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEECH
T ss_pred             ccCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCCCcccccccccccccccccchhhHHHHHHhhhhccCCCceEEEecC
Confidence            47899999888765 489999995 7899999999999999865432   34566778888888774  78999999998


Q ss_pred             CCh-hHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          113 SGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       113 ~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      ++. .|.++++.|+.+||++|++|+||+.+|..+|+|+++
T Consensus        87 ~~~~~a~~~~~~l~~~G~~~V~vldGG~~~W~~~g~p~~~  126 (143)
T d1uara1          87 KNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTT  126 (143)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBC
T ss_pred             CCcccchhHHHHHHHhCCceEEEEcCcHHHHHHCCCCccC
Confidence            764 688899999999999999999999999999999874

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=8.7e-27  Score=155.46  Aligned_cols=109  Identities=18%  Similarity=0.326  Sum_probs=94.6

Q ss_pred             cccCHHHHHHHHh-CCCEEEecCChhhHh------------cCCCCCceeecccccc-CCCCCCCHHHHHHHHhc--cCC
Q 031899           40 TSVPVRVAHELLQ-AGHRYLDVRTPEEFS------------AGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRK  103 (151)
Q Consensus        40 ~~i~~~~~~~~~~-~~~~iiDvR~~~e~~------------~ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--~~~  103 (151)
                      ..++.+++.+.++ ++++|||+|++.||.            .||||||+|+|+..+. ..+.+.+++.+..++..  +++
T Consensus        11 ~i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~gi~~   90 (144)
T d1rhsa2          11 LLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDL   90 (144)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCT
T ss_pred             HeecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhhcccCCHHHHHHHHHHcCCCC
Confidence            4678899876665 459999999999995            6999999999998765 45678888888888765  678


Q ss_pred             CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCC
Q 031899          104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP  148 (151)
Q Consensus       104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p  148 (151)
                      +++||+||++|.+|+.++..|+.+||++|++|+|||.+|...+.|
T Consensus        91 ~~~iI~yC~sG~~A~~~~~~l~~lG~~~v~~YdGsw~eW~~~~~p  135 (144)
T d1rhsa2          91 TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP  135 (144)
T ss_dssp             TSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCG
T ss_pred             CCCEEEEecccchHHHHHHHHHHcCCCCCEEeCCCHHHHhhcCCC
Confidence            899999999999999999999999999999999999999886543

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.94  E-value=3.1e-26  Score=150.89  Aligned_cols=114  Identities=18%  Similarity=0.174  Sum_probs=90.4

Q ss_pred             CccccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCceeeccccccCC-----CCCCCHHHHHHHHhc--cCCCCeEEE
Q 031899           38 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--FRKHDEIIV  109 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~-~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~iv~  109 (151)
                      .+..|+++++.+++.+ +++|||+|++.||..||||||+|+|+..+...     ........+......  ......+++
T Consensus         7 ~p~lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (135)
T d1e0ca1           7 LPLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVV   86 (135)
T ss_dssp             SCSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEE
T ss_pred             CCcEeeHHHHHHHhcCCCeEEEECCCHHHHhcccCccccccchhhhhhcccccchhhcchhhhhhhhccccccccccccc
Confidence            4567899999998865 58999999999999999999999998765532     222333444433332  355667777


Q ss_pred             EeC-CChhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          110 GCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       110 ~c~-~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      ||. ++.++.++++.|+..||+||++|+||+.+|+++|+|+++
T Consensus        87 ~~~~~~~~~~~~~~~l~~~G~~~V~~l~GG~~~W~~~g~p~~~  129 (135)
T d1e0ca1          87 YDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSR  129 (135)
T ss_dssp             ECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             cccccCccchhhHHHHHhccCCCEEEecChHHHHHHCCCCCCC
Confidence            765 567888999999999999999999999999999999974

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.5e-25  Score=145.09  Aligned_cols=102  Identities=24%  Similarity=0.367  Sum_probs=88.3

Q ss_pred             ccCHHHHHHHHh-CCCEEEecCChhhHh-----------cCCCCCceeeccccccCCCCCCCHHHHHHHHhc--cCCCCe
Q 031899           41 SVPVRVAHELLQ-AGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDE  106 (151)
Q Consensus        41 ~i~~~~~~~~~~-~~~~iiDvR~~~e~~-----------~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  106 (151)
                      .++.+++....+ ++++|||+|++++|.           .||||||+|+|+......+.+.+.+.+...+..  ++++++
T Consensus         5 ~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   84 (120)
T d1urha2           5 VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDKP   84 (120)
T ss_dssp             BCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSC
T ss_pred             HccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCcccccccccccccchhchhhcccccccCCHHHhhhhhhhcccCccCc
Confidence            457777665554 569999999999995           799999999999877777788888888877765  578899


Q ss_pred             EEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHH
Q 031899          107 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW  142 (151)
Q Consensus       107 iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W  142 (151)
                      ||+||++|.+|+.+++.|+.+||+||++|+|||.+|
T Consensus        85 ii~yC~sG~~A~~~~~~L~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          85 IIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             EEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred             eEEEccchhHHHHHHHHHHHcCCCCceEcCCChhhC
Confidence            999999999999999999999999999999999988

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=6.9e-26  Score=148.72  Aligned_cols=96  Identities=22%  Similarity=0.237  Sum_probs=82.7

Q ss_pred             CccccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc--cCCCCeEEEEeC
Q 031899           38 VPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQ  112 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~~---~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~  112 (151)
                      ....|+++++.+++.++   ++|||||++.||..||||||+|+|..            .+......  .+++++||+||.
T Consensus        21 ~~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipgai~~p~~------------~~~~~~~~~~~~~~~~ivl~C~   88 (130)
T d1yt8a4          21 GVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGG------------QLVQETDHVASVRGARLVLVDD   88 (130)
T ss_dssp             TCEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCEECCHH------------HHHHSHHHHCCSBTCEEEEECS
T ss_pred             CCcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCccccccc------------ccccccccccCCccceEEeecC
Confidence            35689999999998643   68999999999999999999999993            34333333  467899999999


Q ss_pred             CChhHHHHHHHHHHCCCCceeEccccHHHHHhCC
Q 031899          113 SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG  146 (151)
Q Consensus       113 ~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g  146 (151)
                      +|.||..++..|+++|| ++++|+||+.+|...+
T Consensus        89 ~G~rS~~aa~~L~~~G~-~v~~l~GG~~aw~~~~  121 (130)
T d1yt8a4          89 DGVRANMSASWLAQMGW-QVAVLDGLSEADFSER  121 (130)
T ss_dssp             SSSHHHHHHHHHHHTTC-EEEEECSCCGGGCCBC
T ss_pred             CCccHHHHHHHHHHcCC-CeEEEcCchHHHHHhc
Confidence            99999999999999999 7999999999998764

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=8.2e-26  Score=148.71  Aligned_cols=105  Identities=18%  Similarity=0.261  Sum_probs=84.2

Q ss_pred             CccccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCC-h
Q 031899           38 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG-K  115 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g-~  115 (151)
                      ....|+++++.++++++ ++|||||++.||..||||||+|+|+..+.        ..+..+...+++++++|+||..+ .
T Consensus         6 ~v~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpgAinip~~~~~--------~~~~~~~~~~~~~~~iv~~c~~~~~   77 (132)
T d1t3ka_           6 SISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFD--------DKISHLVQNVKDKDTLVFHSALSQV   77 (132)
T ss_dssp             SSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSS--------TTHHHHHHTCCSCCEEEESSSCCSS
T ss_pred             CCCEECHHHHHHHHhCCCeEEEEccCHHHHHhccCcccceeeeeccc--------ccccccccccccccceEEEeccccc
Confidence            45678888888887655 88999999999999999999999985331        34566666777888999999755 4


Q ss_pred             hHHHHHHHH--------HHCCCCceeEccccHHHHHhCCCCCC
Q 031899          116 RSMMAATDL--------LNAGFAGITDIAGGFAAWRQNGLPTE  150 (151)
Q Consensus       116 ~a~~~~~~L--------~~~G~~~v~~l~GG~~~W~~~g~pv~  150 (151)
                      ++..++..|        ...||+||++|+||+.+|.++|+|+.
T Consensus        78 ~~~~aa~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~  120 (132)
T d1t3ka_          78 RGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVC  120 (132)
T ss_dssp             SHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSC
T ss_pred             cchHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcc
Confidence            555554443        34799999999999999999999986

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.91  E-value=1.5e-25  Score=148.57  Aligned_cols=99  Identities=16%  Similarity=0.265  Sum_probs=81.9

Q ss_pred             hCCCEEEecCChhhHh-----------cCCCCCceeeccccccC----CCCCCCHHHHHHHHhc-------cCCCCeEEE
Q 031899           52 QAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVG----SGMTKNLKFVEEVSTR-------FRKHDEIIV  109 (151)
Q Consensus        52 ~~~~~iiDvR~~~e~~-----------~ghIpgAi~ip~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~iv~  109 (151)
                      .++++|||+|+++||.           .||||||+|+|+...+.    ...+.+++.+...+..       +.++++||+
T Consensus        10 ~p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~   89 (139)
T d1okga2          10 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVF   89 (139)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEE
T ss_pred             CCCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhccccccccccCCHHHhhhhhhhhhhhccCCCCCCeEEE
Confidence            4678999999999997           89999999999976542    2345666666665543       355789999


Q ss_pred             EeCCChhHHHHHHHHHHCCCCceeEccccHHHHHh-CCCCCC
Q 031899          110 GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-NGLPTE  150 (151)
Q Consensus       110 ~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~-~g~pv~  150 (151)
                      ||++|.+|+.+++.|+.+||++|++|+|||.+|.+ .++||+
T Consensus        90 yC~sG~~Aa~~~~~L~~~G~~~v~vydGsw~eW~~~~~~Pv~  131 (139)
T d1okga2          90 SCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIM  131 (139)
T ss_dssp             ECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHH
T ss_pred             ECCCcHHHHHHHHHHHHhCCCCccCCCCCHHHHhCCCCCCee
Confidence            99999999999999999999999999999999966 577875

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.91  E-value=1.1e-24  Score=146.43  Aligned_cols=111  Identities=16%  Similarity=0.101  Sum_probs=91.5

Q ss_pred             ccccCHHHHHHHHhCCCEEEecC--------ChhhHhcCCCCCceeeccccccC--------CCCCCCHHHHHHHHhc--
Q 031899           39 PTSVPVRVAHELLQAGHRYLDVR--------TPEEFSAGHATGAINVPYMYRVG--------SGMTKNLKFVEEVSTR--  100 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~~~~iiDvR--------~~~e~~~ghIpgAi~ip~~~~~~--------~~~~~~~~~~~~~~~~--  100 (151)
                      ...|+++++.+.+. +++|||+|        ...+|..||||||+++++...+.        ..++++.+.+...+..  
T Consensus         7 ~~lvs~~~L~~~l~-d~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~~~~~~~lP~~~~~~~~l~~lG   85 (156)
T d1okga1           7 KVFLDPSEVADHLA-EYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCMANG   85 (156)
T ss_dssp             CCEECHHHHTTCGG-GSEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTT
T ss_pred             CcEeCHHHHHHhcC-CCEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCCCCCccccCCHHHHHHHHHhcc
Confidence            35789999988775 48999999        46889999999999999864432        1346677778877776  


Q ss_pred             cCCCCeEEEEeCC-C-hhHHHHHHHHHHCCCCceeEccccHHHHHhCCCCCCC
Q 031899          101 FRKHDEIIVGCQS-G-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  151 (151)
Q Consensus       101 ~~~~~~iv~~c~~-g-~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  151 (151)
                      ++++++||+||+. | ..++++++.|+.+|+ +|++|+||+.+|+++|+|+++
T Consensus        86 I~~~~~VVvYd~~~g~~~A~R~~w~L~~~G~-~v~iLdGG~~aW~~~G~pv~t  137 (156)
T d1okga1          86 MAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMES  137 (156)
T ss_dssp             CSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEEC
T ss_pred             ccCCceEEEEeCCCCchHHHHHHHHHHHcCC-eeEEeCCCHHHHHHCCCCCCC
Confidence            5789999999864 3 568899999999997 799999999999999999863

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.1e-22  Score=134.04  Aligned_cols=96  Identities=19%  Similarity=0.334  Sum_probs=77.0

Q ss_pred             ccccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhcc------CCCC
Q 031899           39 PTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF------RKHD  105 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~------~~~~  105 (151)
                      .+.|+++++.+++++       +++|||||++.||..||||||+|+|..           +.+...+...      .+..
T Consensus        22 ~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~-----------~~~~~~l~~~~~~~~~~~~~   90 (161)
T d1c25a_          22 LKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHME-----------EEVEDFLLKKPIVPTDGKRV   90 (161)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHTTTSCCCCCTTSEE
T ss_pred             CCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcH-----------HHHHHHHhhhhhhhhhccCC
Confidence            467999999999863       489999999999999999999999974           3333332221      2344


Q ss_pred             eEEEEeC-CChhHHHHHHHHHHC----------CCCceeEccccHHHHHhC
Q 031899          106 EIIVGCQ-SGKRSMMAATDLLNA----------GFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       106 ~iv~~c~-~g~~a~~~~~~L~~~----------G~~~v~~l~GG~~~W~~~  145 (151)
                      .||+||. ++.|+..++..|+..          ||++|++|+||+.+|.+.
T Consensus        91 ~vV~yc~~s~~rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~  141 (161)
T d1c25a_          91 IVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK  141 (161)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHH
T ss_pred             eEEEEeccccccHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHH
Confidence            6899997 778999999988753          999999999999999764

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1e-20  Score=129.43  Aligned_cols=96  Identities=20%  Similarity=0.314  Sum_probs=76.4

Q ss_pred             ccccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhc-------cCCC
Q 031899           39 PTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-------FRKH  104 (151)
Q Consensus        39 ~~~i~~~~~~~~~~~-------~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~-------~~~~  104 (151)
                      ...|+++++.+++++       +++|||+|++.||..|||+||+|+|..           +........       .++.
T Consensus        22 ~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~-----------~~~~~~~~~~~~~~~~~~~~   90 (174)
T d1ymka1          22 LKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLDKR   90 (174)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHTTTCCC----CE
T ss_pred             CcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCch-----------HHHHHHHHHhhhhhhhhccC
Confidence            467999999999964       389999999999999999999999984           223322211       2345


Q ss_pred             CeEEEEeC-CChhHHHHHHHHHH----------CCCCceeEccccHHHHHhC
Q 031899          105 DEIIVGCQ-SGKRSMMAATDLLN----------AGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       105 ~~iv~~c~-~g~~a~~~~~~L~~----------~G~~~v~~l~GG~~~W~~~  145 (151)
                      +.||+||. ++.++..++..|+.          .||++|++|+|||.+|.+.
T Consensus        91 ~~vV~yc~~s~~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~  142 (174)
T d1ymka1          91 VILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ  142 (174)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTT
T ss_pred             ceEEEEeCCCCchHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHh
Confidence            67999997 56788888988875          4999999999999999764

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.7e-20  Score=119.45  Aligned_cols=105  Identities=8%  Similarity=0.062  Sum_probs=73.1

Q ss_pred             ccCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCceeeccccccCCCCC-----CCHHHHHHHHhccCCCCeEEEEeC
Q 031899           41 SVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT-----KNLKFVEEVSTRFRKHDEIIVGCQ  112 (151)
Q Consensus        41 ~i~~~~~~~~~~~---~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~iv~~c~  112 (151)
                      .|+++++.+++++   +++|||+|++.||..+|||||+|+|...+......     .........+......+.||+||.
T Consensus         2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~iV~yd~   81 (135)
T d2gwfa1           2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLDW   81 (135)
T ss_dssp             EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEEEECS
T ss_pred             eECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCeEEeCHHHcccccchhhhhhhhhHHHHHHHhccCCCCeEEEEeC
Confidence            4899999999874   38899999999999999999999998655422110     001122233334456788999998


Q ss_pred             CCh-hH---H----HHHHHHH-----HCCCCceeEccccHHHHHhC
Q 031899          113 SGK-RS---M----MAATDLL-----NAGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       113 ~g~-~a---~----~~~~~L~-----~~G~~~v~~l~GG~~~W~~~  145 (151)
                      .+. ++   .    ...+.|.     ..|..+|++|+||+++|.+.
T Consensus        82 ~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~  127 (135)
T d2gwfa1          82 FSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  127 (135)
T ss_dssp             SCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHhcccccccCCCcEEEEechHHHHHHh
Confidence            652 21   1    1223333     34678999999999999986

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.3e-19  Score=117.47  Aligned_cols=104  Identities=20%  Similarity=0.191  Sum_probs=73.0

Q ss_pred             cccCHHHHHHHHh---CCCEEEecCChhhHhcCCCCCceeeccccccC----------CCCCCCHHHHHHHHhccCCCCe
Q 031899           40 TSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVG----------SGMTKNLKFVEEVSTRFRKHDE  106 (151)
Q Consensus        40 ~~i~~~~~~~~~~---~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  106 (151)
                      ..+|++++.+.++   ++++|||+|++.||..||||||+|+|+.....          ...+.... ..........++.
T Consensus        16 ~~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gAini~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   94 (154)
T d1hzma_          16 ISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGE-DRDRFTRRCGTDT   94 (154)
T ss_dssp             SBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTSH-HHHHHHHSTTSSC
T ss_pred             CccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCCcccCcHHHHhhhccCCcccccccCCcHH-HHHHHhhcCCCCe
Confidence            4578888888774   34899999999999999999999999754321          11222222 2333344566789


Q ss_pred             EEEEeCCCh----------hHHHHHHHHHHCCCCceeEccccHHHHHhC
Q 031899          107 IIVGCQSGK----------RSMMAATDLLNAGFAGITDIAGGFAAWRQN  145 (151)
Q Consensus       107 iv~~c~~g~----------~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~  145 (151)
                      ||+||.++.          +...+...|...|+ +|++|+|||++|.+.
T Consensus        95 VVvYd~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~v~iL~GG~~~w~~~  142 (154)
T d1hzma_          95 VVLYDESSSDWNENTGGESLLGLLLKKLKDEGC-RAFYLEGGFSKFQAE  142 (154)
T ss_dssp             EEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTC-CCEECCCCHHHHHHH
T ss_pred             EEEEcCCCchhhhhHHHHHHHHHHHHHHHhcCC-eEEEEeCcHHHHHHH
Confidence            999997642          23334455555565 899999999999875

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.10  E-value=0.0065  Score=38.57  Aligned_cols=90  Identities=7%  Similarity=-0.044  Sum_probs=50.0

Q ss_pred             cCHHHHHHHHhCC-CEEEecCChhhHhc------CCCCCceeeccccccCCCCCCCHHHHHHHHhcc--CCCCeEEEEeC
Q 031899           42 VPVRVAHELLQAG-HRYLDVRTPEEFSA------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQ  112 (151)
Q Consensus        42 i~~~~~~~~~~~~-~~iiDvR~~~e~~~------ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~~c~  112 (151)
                      .+++++..+.+-+ -.|||.|+..|...      .+=-.-+|+|.............+.+......+  ..+.+++++|.
T Consensus        21 ~t~~~~~~L~~lgIktIidLr~~~e~~~~~~~~~~~gi~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlvHC~  100 (151)
T d1xria_          21 PDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCK  100 (151)
T ss_dssp             CCHHHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTCEEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECS
T ss_pred             CCHHHHHHHHHCCCCEEEECCCcchhhcccchhhhcCceEeecCccccccccccccHHHHHHHHHHHhcCCCCCEEEEcC
Confidence            3667777666666 67999998654221      110123455553222222222334455544443  35679999999


Q ss_pred             CC-hhHHH-HHHHHHHCCCCc
Q 031899          113 SG-KRSMM-AATDLLNAGFAG  131 (151)
Q Consensus       113 ~g-~~a~~-~~~~L~~~G~~~  131 (151)
                      .| .|+.. ++-.|+.+|...
T Consensus       101 ~GkdRTG~v~a~~l~~~g~~~  121 (151)
T d1xria_         101 RGKHRTGCLVGCLRKLQKWCL  121 (151)
T ss_dssp             SSSSHHHHHHHHHHHHTTBCH
T ss_pred             CCchHHHHHHHHHHHHcCCCH
Confidence            88 46554 445556678753

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=95.40  E-value=0.0092  Score=39.08  Aligned_cols=47  Identities=11%  Similarity=0.152  Sum_probs=38.8

Q ss_pred             HHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899           93 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus        93 ~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      .+.++.....++.++++||.+-..+..++..|.+.|+ ++..+.|+++
T Consensus        20 ll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi-~a~~~Hg~~~   66 (174)
T d1c4oa2          20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGI-RARYLHHELD   66 (174)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTCC
T ss_pred             HHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCC-ceEEEecccc
Confidence            4455544456788999999999999999999999999 5888999874

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.38  E-value=0.15  Score=35.13  Aligned_cols=30  Identities=17%  Similarity=0.158  Sum_probs=22.8

Q ss_pred             CccccCHHHHHHHHhCC-CEEEecCChhhHh
Q 031899           38 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFS   67 (151)
Q Consensus        38 ~~~~i~~~~~~~~~~~~-~~iiDvR~~~e~~   67 (151)
                      .+..++.++...+.+-+ -.|||.|++.|..
T Consensus        29 ~l~~lt~~d~~~L~~lgI~tViDLRs~~E~~   59 (272)
T d1ywfa1          29 ELSRLDDAGRATLRRLGITDVADLRSSREVA   59 (272)
T ss_dssp             CCTTCCHHHHHHHHHHTCCEEEECCCHHHHH
T ss_pred             CcCcCCHHHHHHHHHCCCcEEEECCCHHHHh
Confidence            44567888887775555 6799999999965

>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=93.44  E-value=0.041  Score=35.99  Aligned_cols=47  Identities=15%  Similarity=0.248  Sum_probs=38.0

Q ss_pred             HHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899           93 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus        93 ~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      .+......+.++..+++||++-..+..++..|+..|+ .+..+.|+++
T Consensus        20 ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~-~~~~~hg~~~   66 (181)
T d1t5la2          20 LIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGI-KVAYLHSEIK   66 (181)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTC-CEEEECSSCC
T ss_pred             HHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCc-ceeEecCCcc
Confidence            4555544455678899999998899999999999999 5888888874

>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.66  E-value=0.046  Score=34.09  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=31.0

Q ss_pred             CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899          103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus       103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      ++.+.|+||++-..+..++..|...|+ ++..+.+|+.
T Consensus        34 ~~~k~IVFc~t~~~ae~la~~L~~~G~-~~~~~H~~~~   70 (138)
T d1jr6a_          34 KGGRHLIFCHSKKKCDELAAKLVALGI-NAVAYYRGLD   70 (138)
T ss_dssp             TTSCEEEECSCHHHHHHHHHHHHHHTC-EEEEECTTCC
T ss_pred             CCCCEEEEeCcHHHHHHHHHHHhcccc-chhhhhccch
Confidence            355789999999999999999999999 5777887753

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Kinase associated phosphatase (kap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.24  Score=31.82  Aligned_cols=79  Identities=23%  Similarity=0.221  Sum_probs=45.5

Q ss_pred             HHHHHHHHhCC-CEEEecCChhhHhcCCCCC-----------ceeeccccccCCCCCCCHHHHHHHH----hccCCCCeE
Q 031899           44 VRVAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEEVS----TRFRKHDEI  107 (151)
Q Consensus        44 ~~~~~~~~~~~-~~iiDvR~~~e~~~ghIpg-----------Ai~ip~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i  107 (151)
                      .+++..+.+.+ ..|+-.-+..|+..-.++.           -.++|+.+    ...++.+.+....    ..+..+.+|
T Consensus        37 ~~dl~~L~~~gi~~Vv~L~~~~E~~~~~~~~~~~~~~~~gi~~~~~p~~D----~~~p~~~~~~~~~~~i~~~l~~~~~V  112 (176)
T d1fpza_          37 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIAD----GGTPDIASCCEIMEELTTCLKNYRKT  112 (176)
T ss_dssp             HHHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCT----TCCCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHhCCCCEEEEeCChhhhhhcCCCcHHHHHHHcCCEEEeCCccC----CCchhhHHHHHHHHHHHHHHHcCCeE
Confidence            55566676666 5688888887766554442           23455432    2223333333333    334567889


Q ss_pred             EEEeCCC-hhHH-HHHHHHHH
Q 031899          108 IVGCQSG-KRSM-MAATDLLN  126 (151)
Q Consensus       108 v~~c~~g-~~a~-~~~~~L~~  126 (151)
                      +|+|..| .|+. .++..|..
T Consensus       113 ~VHC~~G~gRtg~v~~~~Li~  133 (176)
T d1fpza_         113 LIHSYGGLGRSCLVAACLLLY  133 (176)
T ss_dssp             EEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEecCCCCchHHHHHHHHHH
Confidence            9999987 4554 44455544

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pac-1 [TaxId: 9606]

Probab=91.14  E-value=0.32  Score=30.04  Aligned_cols=84  Identities=12%  Similarity=0.011  Sum_probs=40.3

Q ss_pred             HHHHHHhCC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHH-hccCCCCeEEEEeCCC-hhHH-HHH
Q 031899           46 VAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-TRFRKHDEIIVGCQSG-KRSM-MAA  121 (151)
Q Consensus        46 ~~~~~~~~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iv~~c~~g-~~a~-~~~  121 (151)
                      +...+.+.+ -.||++.........+...-.++|+.+.........-+...... ..+..+.+|+|+|..| .||. .++
T Consensus        21 ~~~~L~~~gI~~Iin~~~~~~~~~~~~~~y~~i~i~D~~~~~i~~~~~~~~~~i~~~~~~~~~VlVHC~~G~sRS~~v~~  100 (145)
T d1m3ga_          21 DLQGLQACGITAVLNVSASCPNHFEGLFRYKSIPVEDNQMVEISAWFQEAIGFIDWVKNSGGRVLVHSQAGISRSATICL  100 (145)
T ss_dssp             HHHHHHHHTCSEEEECSSSSSEEECSSSEEEECCCCCSTTCCCTTSHHHHHHHHHHHHHTTCCEEECCSSSSSHHHHHHH
T ss_pred             CHHHHHHcCCcEEEEecCCCCcCCCCceEEEEEeccCCchhhHHHHHHHHHHHHHHhhccCceEEEEcccccccHHHHHH
Confidence            344444455 45888875432222222223456664332222221111112222 2234678999999988 4654 333


Q ss_pred             H-HHHHCCC
Q 031899          122 T-DLLNAGF  129 (151)
Q Consensus       122 ~-~L~~~G~  129 (151)
                      . .++..|+
T Consensus       101 aYLm~~~~~  109 (145)
T d1m3ga_         101 AYLMQSRRV  109 (145)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHhCC
Confidence            3 4455565

>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.21  E-value=0.23  Score=31.01  Aligned_cols=46  Identities=22%  Similarity=0.249  Sum_probs=34.1

Q ss_pred             HHHHHHhcc-CCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccH
Q 031899           93 FVEEVSTRF-RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF  139 (151)
Q Consensus        93 ~~~~~~~~~-~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~  139 (151)
                      .++.+...+ ..+.+.|+||++-..+..++..|++.|+ .+..+.|++
T Consensus        16 K~~~L~~ll~~~~~k~IIF~~s~~~~~~l~~~L~~~g~-~~~~~~~~~   62 (155)
T d1hv8a2          16 RFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGF-KAGAIHGDL   62 (155)
T ss_dssp             HHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             HHHHHHHHHccCCCCEEEEECchHHHHHHHhhhccccc-ccccccccc
Confidence            344444433 2345689999998889999999999999 577788775

>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=0.32  Score=30.87  Aligned_cols=46  Identities=15%  Similarity=0.258  Sum_probs=34.9

Q ss_pred             HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHH
Q 031899           94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA  141 (151)
Q Consensus        94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~  141 (151)
                      +..++.... ...+|+||++-..+..++..|...|+ ++..+.|++..
T Consensus        18 L~~ll~~~~-~~k~iIF~~~~~~~~~l~~~L~~~~~-~~~~ihg~~~~   63 (168)
T d1t5ia_          18 LFDLLDVLE-FNQVVIFVKSVQRCIALAQLLVEQNF-PAIAIHRGMPQ   63 (168)
T ss_dssp             HHHHHHHSC-CSSEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCH
T ss_pred             HHHHHHhCC-CCeEEEEEeeeecchhhhhhhccccc-cccccccccch
Confidence            333444443 44689999998888899999999999 58888998753

>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.82  E-value=0.3  Score=30.88  Aligned_cols=46  Identities=13%  Similarity=0.281  Sum_probs=35.0

Q ss_pred             HHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899           93 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus        93 ~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      .+..+....+ ..++++||++-..+..++..|...|+ .+..+.|++.
T Consensus        17 ~L~~ll~~~~-~~k~iIF~~s~~~~~~l~~~L~~~~~-~~~~~~~~~~   62 (162)
T d1fuka_          17 CLTDLYDSIS-VTQAVIFCNTRRKVEELTTKLRNDKF-TVSAIYSDLP   62 (162)
T ss_dssp             HHHHHHHHTT-CSCEEEEESSHHHHHHHHHHHHHTTC-CEEEECTTSC
T ss_pred             HHHHHHHhCC-CCcEEEEEEEEchHHHHHHHHhhcCc-eEEEeccCCc
Confidence            3444444443 45688999998889999999999999 5778888764

>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.37  E-value=0.28  Score=31.18  Aligned_cols=45  Identities=13%  Similarity=0.293  Sum_probs=34.5

Q ss_pred             HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899           94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus        94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      +..++... +..++|+||++-..+..++..|...|+ ++..+.|++.
T Consensus        23 L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~g~-~~~~~h~~~~   67 (171)
T d1s2ma2          23 LNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGY-SCYYSHARMK   67 (171)
T ss_dssp             HHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTC-CEEEECTTSC
T ss_pred             HHHHHHhC-CCCceEEEEeeeehhhHhHHhhhcccc-cccccccccc
Confidence            44444444 355789999998888899999999999 5777888764

>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=86.50  E-value=0.4  Score=31.43  Aligned_cols=38  Identities=18%  Similarity=0.276  Sum_probs=32.3

Q ss_pred             CCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHH
Q 031899          103 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA  141 (151)
Q Consensus       103 ~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~  141 (151)
                      ++.++||||++-..+..++..|...|+ ++..+.|++..
T Consensus        29 ~~~~~IIF~~t~~~~~~l~~~l~~~~~-~~~~~h~~~~~   66 (200)
T d1oywa3          29 RGKSGIIYCNSRAKVEDTAARLQSKGI-SAAAYHAGLEN   66 (200)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCH
T ss_pred             CCCCEEEEEeeehhhHHhhhhhccCCc-eeEEecCCCcH
Confidence            456789999999899999999999999 68888888643

>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.23  E-value=0.42  Score=30.32  Aligned_cols=47  Identities=9%  Similarity=0.269  Sum_probs=35.5

Q ss_pred             HHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHHHH
Q 031899           94 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW  142 (151)
Q Consensus        94 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W  142 (151)
                      +..+.... +..++++||++...+..++..|+..|+ .+..+.|++...
T Consensus        25 L~~ll~~~-~~~k~iiF~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~   71 (168)
T d2j0sa2          25 LCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANF-TVSSMHGDMPQK   71 (168)
T ss_dssp             HHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHH
T ss_pred             HHHHHHhC-CCCceEEEeeeHHHHHHHHHHhhhccc-chhhhhhhhhHH
Confidence            33344433 345799999999889999999999999 577888877544

>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.17  E-value=0.24  Score=34.79  Aligned_cols=36  Identities=19%  Similarity=0.282  Sum_probs=30.4

Q ss_pred             CCeEEEEeCCChhHHHHHHHHHHCCCCceeEccccHH
Q 031899          104 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus       104 ~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      ..+++|||++-..+..++..|++.|+ ++..+.+|+.
T Consensus        36 ggk~LVFcnSR~~aE~La~~L~~~Gi-~a~~~Hggls   71 (299)
T d1a1va2          36 GGRHLIFCHSKKKCDELAAKLVALGI-NAVAYYRGLD   71 (299)
T ss_dssp             SSEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHHCCC-CEEEEeCCch
Confidence            56789999999999999999999999 5667777654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=84.11  E-value=2.6  Score=25.22  Aligned_cols=48  Identities=15%  Similarity=0.237  Sum_probs=35.0

Q ss_pred             CCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899           89 KNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG  138 (151)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG  138 (151)
                      ++.+....+.+.+...+++++ ++.|.-+..+|..|.+.|. +|.+++.+
T Consensus        20 r~~~d~~~l~~~~~~~k~v~V-IGgG~iG~E~A~~l~~~g~-~Vtvie~~   67 (133)
T d1q1ra2          20 RTLEDAECIRRQLIADNRLVV-IGGGYIGLEVAATAIKANM-HVTLLDTA   67 (133)
T ss_dssp             SSHHHHHHHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCHHHHHHHHHhhccCCEEEE-ECCchHHHHHHHHHHhhCc-ceeeeeec
Confidence            444566666666666666655 5888888899999999998 57777644

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=83.83  E-value=2.3  Score=25.04  Aligned_cols=47  Identities=13%  Similarity=0.263  Sum_probs=34.1

Q ss_pred             CCHHHHHHHHhccCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEccc
Q 031899           89 KNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG  137 (151)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~G  137 (151)
                      ++-+....+.+.+.+.+++++ .+.|.-+..+|..|.+.|. +|.+++.
T Consensus        15 rtl~Da~~l~~~~~~~~~vvI-IGgG~iG~E~A~~l~~~g~-~Vtli~~   61 (121)
T d1d7ya2          15 RTLEDARRIQAGLRPQSRLLI-VGGGVIGLELAATARTAGV-HVSLVET   61 (121)
T ss_dssp             CSHHHHHHHHHHCCTTCEEEE-ECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCHHHHHHHHHhhhcCCeEEE-ECcchhHHHHHHHhhcccc-eEEEEee
Confidence            444566666666766777665 4788888889999999997 5776654

>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Bacillus subtilis [TaxId: 1423]

Probab=83.65  E-value=0.5  Score=28.68  Aligned_cols=37  Identities=19%  Similarity=0.022  Sum_probs=28.0

Q ss_pred             CCeEEEEeCCC-hhHHHHHHHHHHCCCCceeEccccHH
Q 031899          104 HDEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGFA  140 (151)
Q Consensus       104 ~~~iv~~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~~  140 (151)
                      ++.|+|+|... -||..|...|+..+-+++.+..+|+.
T Consensus         1 ~K~ILFVC~gN~cRSpmAEai~~~~~~~~~~~~Sag~~   38 (137)
T d1jl3a_           1 NKIIYFLCTGNSCRSQMAEGWAKQYLGDEWKVYSAGIE   38 (137)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHSCTTEEEEEEESS
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhCCCCeeecccccc
Confidence            46789999765 58877777888877677777777764

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.02  E-value=3.2  Score=28.00  Aligned_cols=90  Identities=13%  Similarity=0.133  Sum_probs=51.4

Q ss_pred             cCHHHHHHHHh----CC-CEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCChh
Q 031899           42 VPVRVAHELLQ----AG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  116 (151)
Q Consensus        42 i~~~~~~~~~~----~~-~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~  116 (151)
                      ++.+++.++.+    -+ -+++.|.+.+|.....--|+--+-.+...-...-.+.+....+...++++.  ++++.+|..
T Consensus       136 L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~~a~iIGINnRnL~t~~vd~~~~~~L~~~ip~~~--~~IaESGI~  213 (247)
T d1a53a_         136 LTERELESLLEYARSYGMEPLIEINDENDLDIALRIGARFIGINSRDLETLEINKENQRKLISMIPSNV--VKVAESGIS  213 (247)
T ss_dssp             SCHHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHHTTCSEEEEESBCTTTCCBCHHHHHHHHHHSCTTS--EEEEESCCC
T ss_pred             ccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHhCCCCeEeeeccChhhhhhhhhHHHHHHhhCCCCC--eEEEecCCC
Confidence            34444444443    23 567888887776533222333333322111222334456666777787654  445788887


Q ss_pred             HHHHHHHHHHCCCCcee
Q 031899          117 SMMAATDLLNAGFAGIT  133 (151)
Q Consensus       117 a~~~~~~L~~~G~~~v~  133 (151)
                      +..-...+++.|++.+.
T Consensus       214 t~~dv~~l~~~G~davL  230 (247)
T d1a53a_         214 ERNEIEELRKLGVNAFL  230 (247)
T ss_dssp             CHHHHHHHHHTTCCEEE
T ss_pred             CHHHHHHHHHCCCCEEE
Confidence            77777789999996543

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.20  E-value=0.99  Score=29.73  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=24.5

Q ss_pred             CCCeEEEEeCCCh---hHHHHHHHHHHCCCCceeEc
Q 031899          103 KHDEIIVGCQSGK---RSMMAATDLLNAGFAGITDI  135 (151)
Q Consensus       103 ~~~~iv~~c~~g~---~a~~~~~~L~~~G~~~v~~l  135 (151)
                      +.++|+++|+.|.   .+-.+|+.|...|+ +|.++
T Consensus        39 ~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~-~V~v~   73 (211)
T d2ax3a2          39 SDYRFLVLCGGGNNGGDGFVVARNLLGVVK-DVLVV   73 (211)
T ss_dssp             TTCEEEEEECSSHHHHHHHHHHHHHTTTSS-EEEEE
T ss_pred             cCCcEEEEECCCCCchhHHHHHHHHHhcCC-eeEEE
Confidence            3578999999884   45678899999998 45543

>d1u9ya2 c.61.1.2 (A:156-284) Phosphoribosylpyrophosphate synthetase {Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosylpyrophosphate synthetase-like
domain: Phosphoribosylpyrophosphate synthetase
species: Methanocaldococcus jannaschii [TaxId: 2190]

Probab=82.17  E-value=1.2  Score=26.90  Aligned_cols=33  Identities=18%  Similarity=0.177  Sum_probs=26.5

Q ss_pred             CCCeEEEEe---CCChhHHHHHHHHHHCCCCceeEc
Q 031899          103 KHDEIIVGC---QSGKRSMMAATDLLNAGFAGITDI  135 (151)
Q Consensus       103 ~~~~iv~~c---~~g~~a~~~~~~L~~~G~~~v~~l  135 (151)
                      +++.+|++.   ++|.....+++.|++.|.++|+.+
T Consensus        49 ~gk~viIvDDii~TGgTl~~aa~~Lk~~GA~~V~~~   84 (129)
T d1u9ya2          49 KDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAA   84 (129)
T ss_dssp             TTCCEEEEEEECSSSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             cceEEEEEcchhcccccHHHHHHHHHhcCCcceEEE
Confidence            467788874   578888899999999999887754

>d1s4da_ c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) {Pseudomonas denitrificans [TaxId: 43306]}

class: Alpha and beta proteins (a/b)
fold: Tetrapyrrole methylase
superfamily: Tetrapyrrole methylase
family: Tetrapyrrole methylase
domain: Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA)
species: Pseudomonas denitrificans [TaxId: 43306]

Probab=80.67  E-value=4.7  Score=26.73  Aligned_cols=112  Identities=18%  Similarity=0.101  Sum_probs=62.3

Q ss_pred             CCccccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCceeeccccccCCCCCCCHHHHHHHHhccCCCCeEEEEeCCC--
Q 031899           37 GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG--  114 (151)
Q Consensus        37 ~~~~~i~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g--  114 (151)
                      +.+..+|.+-+..+.+.++++-|.+-..+...-.-+...................+...........++.+++.|...  
T Consensus        20 Gdp~~iT~~a~~~L~~ADvV~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~~V~~l~~GDp~   99 (265)
T d1s4da_          20 GDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGGKPSPKQRDISLRLVELARAGNRVLRLKGGDPF   99 (265)
T ss_dssp             SCTTSSBHHHHHHHHHCSEEEECSCSCTTGGGGSSTTCCEEECSCCC--CCCCHHHHHHHHHHHHHTTCCEEEEESBCTT
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccCHHHHhhcccccEeeecccccccccchhHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            456789999888888888888887765554433333443333321111111111222333333345567777777432  


Q ss_pred             --hhHHHHHHHHHHCCCCceeEccc--cH-HHHHhCCCCC
Q 031899          115 --KRSMMAATDLLNAGFAGITDIAG--GF-AAWRQNGLPT  149 (151)
Q Consensus       115 --~~a~~~~~~L~~~G~~~v~~l~G--G~-~~W~~~g~pv  149 (151)
                        .........+.+.|+ .+.++.|  .+ .+...+|.|+
T Consensus       100 ~~~~~~~~~~~~~~~~~-~~eViPGiss~~aa~a~~g~~l  138 (265)
T d1s4da_         100 VFGRGGEEALTLVEHQV-PFRIVPGITAGIGGLAYAGIPV  138 (265)
T ss_dssp             SSSSHHHHHHHHHTTTC-CEEEECCCCTTTHHHHHTTCCS
T ss_pred             cccchHHHHHHHHhcCC-ceEEecccccchhhHHHhhhhc
Confidence              345567778888887 4777765  22 3455566654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=80.12  E-value=1.5  Score=27.42  Aligned_cols=37  Identities=24%  Similarity=0.350  Sum_probs=27.2

Q ss_pred             cCCCCeEEEEeCCChhHHHHHHHHHHCCCCceeEcccc
Q 031899          101 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG  138 (151)
Q Consensus       101 ~~~~~~iv~~c~~g~~a~~~~~~L~~~G~~~v~~l~GG  138 (151)
                      ++++++|+++ ++|..+..++..|.+.|++++.++.-.
T Consensus        14 ~~~~~~vlIl-GaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          14 LNKNAKVIVH-GSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             CCTTSCEEEE-CSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCCCeEEEE-CCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            4577788877 445555567888999999888887543