Citrus Sinensis ID: 031931

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MGVEGTIEYISDLLSSVKKKKKKKQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAIPATATVTESTMDDRYTNMFSDENPNACSIM
Secondary Structure (PSIPRED)
ccccccHHHHHHHHccHHHcccccccEEEEEEEEccHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEEccHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccccccccccEEEEEEEEEEccHHHHHHHHHHHHHccccEEEEEcccccEEEEEEEccHHHHHHHHHHcccccEEccccccccccccccccccccccccccEccccccccccccccHHHHHcccccccccccEcc
Coil and Loop (DISEMBL)
MGVEGTIEYISDLLSSVKKKKKKKQMQTVALKVRMDCDGCARKMKGVLssvkgaksvdvdlkqqkvtvtGFVEPKKVLAAAKATKKkveiwpyvpynivsnpyvsqaydkkappnhvraipatatvtestmddrytnmfsdenpnacsim
Flexible Loop (DISEMBL)
MGVEGTIEYISDLLSsvkkkkkkkqmQTVALkvrmdcdgcARKMKGvlssvkgaksvdvdlkqqkvtvtgfvepkkvlaaakatkkkveiwpyvpyNIVSNPYVSQAYDKKappnhvraipatatvtestmdDRYTNmfsdenpnacsim
Low Complexity Region (SEG)
MGVEGTIEYISDLLSSVkkkkkkkQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPkkvlaaakatkkkVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAIPATATVTESTMDDRYTNMFSDENPNACSIM
Disordered region (IsUnstruct)
*****************************ALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYD*****************************************
Disordered Region (DISOPRED)
****GTI**********************ALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAIPATATVTESTMDDRYTNMFSDENPNACSIM
Disordered Region (DISEMBL)
MGVEGTIEYISDLLSS************VALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAIPATATVTESTMDDRYTNMFSDENPNACSIM
Disordered Region (DISPRO)
*GVEGTIEYISDLLSSVKKKKKKKQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAIPATATVTESTMDDRYTNMFSDENPNACSIM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVEGTIEYISDLLSSVKKKKKKKQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAIPATATVTESTMDDRYTNMFSDENPNACSIM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q9SZN7	153	Heavy metal-associated is	no	no	0.973	0.954	0.467	2e-34

>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 105/152 (69%), Gaps = 6/152 (3%)

Query: 5   GTIEYISDLL--SSVKKKKKKKQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLK 62
           G ++++S++   S   K KK+KQ+QTV +KV+MDC+GC RK++  +  +KG  SV ++ K
Sbjct: 2   GVLDHVSEMFDCSHGHKIKKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPK 61

Query: 63  QQKVTVTGFVEPKKVLA-AAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAI- 120
             KVTV G+V+P KV+A  +  T KKVE+WPYVPY++V++PY +  YDKKAP  +VR + 
Sbjct: 62  AHKVTVVGYVDPNKVVARMSHRTGKKVELWPYVPYDVVAHPYAAGVYDKKAPSGYVRRVD 121

Query: 121 -PATATVTE-STMDDRYTNMFSDENPNACSIM 150
            P  + +   S+ + RYT  FSDENP AC +M
Sbjct: 122 DPGVSQLARASSTEVRYTTAFSDENPAACVVM 153

Heavy-metal-binding protein. Binds lead, cadmium and copper. May be involved in heavy-metal transport.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
224084726	150	predicted protein [Populus trichocarpa]	1.0	1.0	0.82	8e-69
224063193	150	predicted protein [Populus trichocarpa]	1.0	1.0	0.8	4e-67
224124342	150	predicted protein [Populus trichocarpa]	1.0	1.0	0.773	1e-60
255545622	139	metal ion binding protein, putative [Ric	0.926	1.0	0.78	3e-60
356508134	149	PREDICTED: uncharacterized protein LOC10	0.993	1.0	0.76	4e-58
363814406	149	uncharacterized protein LOC100805807 [Gl	0.993	1.0	0.753	2e-57
15236529	150	heavy-metal-associated domain-containing	0.993	0.993	0.741	4e-56
388500220	149	unknown [Medicago truncatula]	0.993	1.0	0.753	2e-55
297809049	150	predicted protein [Arabidopsis lyrata su	0.993	0.993	0.721	8e-55
449445108	148	PREDICTED: heavy metal-associated isopre	0.986	1.0	0.68	3e-54

>gi|224084726|ref|XP_002307396.1| predicted protein [Populus trichocarpa] gi|224084732|ref|XP_002307397.1| predicted protein [Populus trichocarpa] gi|222856845|gb|EEE94392.1| predicted protein [Populus trichocarpa] gi|222856846|gb|EEE94393.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (675), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 123/150 (82%), Positives = 139/150 (92%)

Query: 1   MGVEGTIEYISDLLSSVKKKKKKKQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVD 60
           MGV GT+EY SDLLS+VKK KK+KQMQTVALKVRMDC+GC RK+K VLS VKGAKSVDVD
Sbjct: 1   MGVAGTLEYFSDLLSNVKKGKKRKQMQTVALKVRMDCEGCERKIKSVLSGVKGAKSVDVD 60

Query: 61  LKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAI 120
           +KQQKVTVTG+VEPKKVL AA++TKKKVE+WPYVPY +V+NPYVSQAYDKKAP NHVRA+
Sbjct: 61  MKQQKVTVTGYVEPKKVLKAAQSTKKKVEMWPYVPYTLVANPYVSQAYDKKAPANHVRAV 120

Query: 121 PATATVTESTMDDRYTNMFSDENPNACSIM 150
           P TAT++E+TMDD YTNMFSDENPNACSIM
Sbjct: 121 PVTATISETTMDDNYTNMFSDENPNACSIM 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063193|ref|XP_002301034.1| predicted protein [Populus trichocarpa] gi|222842760|gb|EEE80307.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 120/150 (80%), Positives = 138/150 (92%)

Query: 1   MGVEGTIEYISDLLSSVKKKKKKKQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVD 60
           MGV GT+EY SDLLS++K+++KKKQMQTVALKVRMDC+GC RK+K VLS VKG KSV VD
Sbjct: 1   MGVAGTLEYFSDLLSNLKRRRKKKQMQTVALKVRMDCEGCERKVKSVLSGVKGVKSVGVD 60

Query: 61  LKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAI 120
           +KQQKVTVTG VEPKKVL AA++TKKKVE+WPYVPY +V++PYVSQAYDKKAPPNHVRAI
Sbjct: 61  MKQQKVTVTGNVEPKKVLKAAQSTKKKVEMWPYVPYTLVAHPYVSQAYDKKAPPNHVRAI 120

Query: 121 PATATVTESTMDDRYTNMFSDENPNACSIM 150
           P TAT++E+TMDD YTNMFSDENPNACSIM
Sbjct: 121 PVTATISETTMDDNYTNMFSDENPNACSIM 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124342|ref|XP_002329999.1| predicted protein [Populus trichocarpa] gi|222871424|gb|EEF08555.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/150 (77%), Positives = 132/150 (88%)

Query: 1   MGVEGTIEYISDLLSSVKKKKKKKQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVD 60
           MGV GT+EY SDLLS+ KK KKKK MQTVALKVRMDC GC RK+K VL  V+G KSV VD
Sbjct: 1   MGVAGTLEYFSDLLSNAKKGKKKKLMQTVALKVRMDCQGCERKVKSVLYGVEGVKSVKVD 60

Query: 61  LKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAI 120
           +KQQKVTVTGFVEP+KVL AA++TKKKVE+WPYVPY +V++PYVSQAYDKKAPPNHVRA+
Sbjct: 61  MKQQKVTVTGFVEPEKVLKAAQSTKKKVELWPYVPYFLVAHPYVSQAYDKKAPPNHVRAV 120

Query: 121 PATATVTESTMDDRYTNMFSDENPNACSIM 150
           P TAT++ES +DD Y NMFSDENPNACSIM
Sbjct: 121 PVTATISESIIDDYYINMFSDENPNACSIM 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545622|ref|XP_002513871.1| metal ion binding protein, putative [Ricinus communis] gi|223546957|gb|EEF48454.1| metal ion binding protein, putative [Ricinus communis]

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 117/150 (78%), Positives = 133/150 (88%), Gaps = 11/150 (7%)

Query: 1   MGVEGTIEYISDLLSSVKKKKKKKQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVD 60
           MGV GT+EY+SDLLSSVKK+KKKKQ+QTVALK+RMDC+GCAR           AKSVD+D
Sbjct: 1   MGVAGTVEYLSDLLSSVKKRKKKKQIQTVALKIRMDCEGCAR-----------AKSVDID 49

Query: 61  LKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAI 120
           LKQQK TVTG+VEPKKVL AA++TKKKVE+WPYVPY +V+NPYVSQAYDKKAP NHVRA+
Sbjct: 50  LKQQKATVTGYVEPKKVLKAAQSTKKKVEMWPYVPYTLVANPYVSQAYDKKAPANHVRAV 109

Query: 121 PATATVTESTMDDRYTNMFSDENPNACSIM 150
           P TAT+TEST+DDRYTNMFSDENPNACSIM
Sbjct: 110 PVTATITESTVDDRYTNMFSDENPNACSIM 139

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508134|ref|XP_003522815.1| PREDICTED: uncharacterized protein LOC100782955 [Glycine max]

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 114/150 (76%), Positives = 135/150 (90%), Gaps = 1/150 (0%)

Query: 1   MGVEGTIEYISDLLSSVKKKKKKKQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVD 60
           MGV+G +EY+SDLLS+ KKKKKKKQ+QTVALK+RMDC+GCARK+K VLS VKGAKSV+VD
Sbjct: 1   MGVQGPLEYLSDLLST-KKKKKKKQVQTVALKIRMDCEGCARKVKHVLSGVKGAKSVEVD 59

Query: 61  LKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAI 120
           LKQQK TVTG+VEPKKVL AA++TKKKVE+WPYVPY +V+NPY+SQAYDKKAPPN VR +
Sbjct: 60  LKQQKATVTGYVEPKKVLKAAQSTKKKVELWPYVPYTMVANPYISQAYDKKAPPNMVRKV 119

Query: 121 PATATVTESTMDDRYTNMFSDENPNACSIM 150
             T  ++E+T+DDRY  MFSDENPNACSIM
Sbjct: 120 SDTTNISETTVDDRYIQMFSDENPNACSIM 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814406|ref|NP_001242585.1| uncharacterized protein LOC100805807 [Glycine max] gi|255633786|gb|ACU17253.1| unknown [Glycine max]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/150 (75%), Positives = 136/150 (90%), Gaps = 1/150 (0%)

Query: 1   MGVEGTIEYISDLLSSVKKKKKKKQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVD 60
           MGV+GT+EY+SDLLS+ KKKKKKKQ+QTVALK+RMDC+GCARK+K VL  VKGAKSV+VD
Sbjct: 1   MGVQGTMEYLSDLLST-KKKKKKKQVQTVALKIRMDCEGCARKVKHVLFGVKGAKSVEVD 59

Query: 61  LKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAI 120
           LKQQK TVTG+VEPKKVL AA++TKKKVE+W YVPY++V+NPY+SQAYDKKAPPN VR +
Sbjct: 60  LKQQKATVTGYVEPKKVLKAAQSTKKKVELWSYVPYSMVANPYISQAYDKKAPPNMVRKV 119

Query: 121 PATATVTESTMDDRYTNMFSDENPNACSIM 150
             TA ++E+T+DDRY  +FSDENPNACSIM
Sbjct: 120 ADTANISETTVDDRYIQIFSDENPNACSIM 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236529|ref|NP_192597.1| heavy-metal-associated domain-containing protein [Arabidopsis thaliana] gi|3377812|gb|AAC28185.1| contains similarity to heavy-metal-associated domain containing proteins (Pfam: HMA.hm, score: 12.02) [Arabidopsis thaliana] gi|7267499|emb|CAB77982.1| putative metal-binding isoprenylated protein [Arabidopsis thaliana] gi|17979353|gb|AAL49902.1| putative metal-binding isoprenylated protein [Arabidopsis thaliana] gi|20465505|gb|AAM20235.1| putative metal-binding isoprenylated protein [Arabidopsis thaliana] gi|110741030|dbj|BAE98609.1| putative metal-binding isoprenylated protein [Arabidopsis thaliana] gi|332657259|gb|AEE82659.1| heavy-metal-associated domain-containing protein [Arabidopsis thaliana]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 134/151 (88%), Gaps = 2/151 (1%)

Query: 1   MGVEGTIEYISDLLSSVKKKKKKKQMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDV 59
           MGVEGT+EYISDLL   +K+KKKKQMQTVAL+V R+DC+GC RK+K VLS VKG KSVDV
Sbjct: 1   MGVEGTMEYISDLLKK-RKRKKKKQMQTVALRVARIDCEGCERKIKHVLSGVKGVKSVDV 59

Query: 60  DLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRA 119
           D+K QKVTVTG+++PKKVL AAK+TKKKVE+WPYVPY +V+NPY+SQAYDKKAPPN VR 
Sbjct: 60  DVKLQKVTVTGYIDPKKVLEAAKSTKKKVELWPYVPYTMVANPYISQAYDKKAPPNMVRK 119

Query: 120 IPATATVTESTMDDRYTNMFSDENPNACSIM 150
           +P TA+V E+T+DD YT MFSDENPN+C+IM
Sbjct: 120 VPDTASVNETTVDDSYTIMFSDENPNSCAIM 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500220|gb|AFK38176.1| unknown [Medicago truncatula]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 113/150 (75%), Positives = 132/150 (88%), Gaps = 1/150 (0%)

Query: 1   MGVEGTIEYISDLLSSVKKKKKKKQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVD 60
           MGV+GT+EY+SDLLSS  KKKKKKQ QTV+LK+RMDC+GCARK+K VLS VKGAK VDVD
Sbjct: 1   MGVQGTLEYLSDLLSS-TKKKKKKQTQTVSLKIRMDCEGCARKVKHVLSGVKGAKKVDVD 59

Query: 61  LKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAI 120
           LKQQKVTV+G+VEPKKVL AA++TKKKVE+WPYVPY +V++PY+SQAYDKKAPPN VR +
Sbjct: 60  LKQQKVTVSGYVEPKKVLKAAQSTKKKVELWPYVPYTMVAHPYISQAYDKKAPPNMVRKV 119

Query: 121 PATATVTESTMDDRYTNMFSDENPNACSIM 150
             T+ + EST DD Y  MFSDENPNACSIM
Sbjct: 120 GDTSNIKESTFDDSYVEMFSDENPNACSIM 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809049|ref|XP_002872408.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318245|gb|EFH48667.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 131/151 (86%), Gaps = 2/151 (1%)

Query: 1   MGVEGTIEYISDLLSSVKKKKKKKQMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDV 59
           MGVEGT+EYISD L   +K+KKKKQ+QTVAL+V R+DC+GC RK+K +LS VKG KSVDV
Sbjct: 1   MGVEGTMEYISDFLKK-RKRKKKKQLQTVALRVARIDCEGCERKIKHILSGVKGVKSVDV 59

Query: 60  DLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRA 119
           D+K QKVTVTG++EPKKVL AAK+TKKKVE+WPYVPY +V+NPY+SQAYDKKAPPN VR 
Sbjct: 60  DVKLQKVTVTGYIEPKKVLEAAKSTKKKVELWPYVPYTMVANPYISQAYDKKAPPNMVRK 119

Query: 120 IPATATVTESTMDDRYTNMFSDENPNACSIM 150
           +P T +V E+T+DD YT MFSDENPN+C IM
Sbjct: 120 VPDTTSVNETTVDDSYTIMFSDENPNSCIIM 150

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445108|ref|XP_004140315.1| PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Cucumis sativus] gi|449479848|ref|XP_004155726.1| PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Cucumis sativus]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 127/150 (84%), Gaps = 2/150 (1%)

Query: 1   MGVEGTIEYISDLLSSVKKKKKKKQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVD 60
           MGVEGT EY S+L++  K +KKKKQMQTV+LKVRMDC+GC RKMK ++S VKGAK VDVD
Sbjct: 1   MGVEGTWEYFSNLVN--KHRKKKKQMQTVSLKVRMDCEGCGRKMKQIMSRVKGAKKVDVD 58

Query: 61  LKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAI 120
           +KQ KVTVTG++EPKKVL AA+ATKKKVE+WPYVP ++   PY+S +YDKKAPPN VR++
Sbjct: 59  VKQMKVTVTGYIEPKKVLKAAQATKKKVEMWPYVPVSLEPYPYISASYDKKAPPNMVRSV 118

Query: 121 PATATVTESTMDDRYTNMFSDENPNACSIM 150
           P TAT+TE+ +++ Y  MFSD+NP ACSIM
Sbjct: 119 PNTATITETLVNENYVRMFSDDNPYACSIM 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2133544	150	AT4G08570 "AT4G08570" [Arabido	0.993	0.993	0.635	1.2e-47
TAIR|locus:2135277	158	AT4G39700 [Arabidopsis thalian	1.0	0.949	0.518	4.3e-38
TAIR|locus:2026336	152	HIPP20 "heavy metal associated	1.0	0.986	0.453	2.6e-31
TAIR|locus:2017759	152	HIPP22 "heavy metal associated	0.966	0.953	0.453	2.6e-31
TAIR|locus:2156927	147	HIPP27 "heavy metal associated	0.84	0.857	0.465	1e-27
TAIR|locus:2121199	153	FP6 "farnesylated protein 6" [	0.973	0.954	0.401	1.3e-27
TAIR|locus:2157457	149	HIPP21 "heavy metal associated	0.966	0.973	0.382	6.6e-26
TAIR|locus:2131561	153	HIPP25 "heavy metal associated	0.973	0.954	0.348	2.1e-22
TAIR|locus:4515103273	166	AT3G56891 [Arabidopsis thalian	0.473	0.427	0.375	2.2e-15
TAIR|locus:2029914	141	AT1G29100 "AT1G29100" [Arabido	0.533	0.567	0.353	7.9e-14

TAIR|locus:2133544 AT4G08570 "AT4G08570" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 96/151 (63%), Positives = 115/151 (76%)

Query:     1 MGVEGTIEYISDLLSSVXXXXXXXQMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDV 59
             MGVEGT+EYISDLL          QMQTVAL+V R+DC+GC RK+K VLS VKG KSVDV
Sbjct:     1 MGVEGTMEYISDLLKK-RKRKKKKQMQTVALRVARIDCEGCERKIKHVLSGVKGVKSVDV 59

Query:    60 DLKQQKVTVTGFVEPXXXXXXXXXXXXXVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRA 119
             D+K QKVTVTG+++P             VE+WPYVPY +V+NPY+SQAYDKKAPPN VR 
Sbjct:    60 DVKLQKVTVTGYIDPKKVLEAAKSTKKKVELWPYVPYTMVANPYISQAYDKKAPPNMVRK 119

Query:   120 IPATATVTESTMDDRYTNMFSDENPNACSIM 150
             +P TA+V E+T+DD YT MFSDENPN+C+IM
Sbjct:   120 VPDTASVNETTVDDSYTIMFSDENPNSCAIM 150

GO:0005575 "cellular_component" evidence=ND

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2135277 AT4G39700 [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 82/158 (51%), Positives = 104/158 (65%)

Query:     1 MGVEGTIEYISDLLS-----SVXXXXXXXQMQTVALKVRMDCDGCARKMKGVLSSVKGAK 55
             MGV GT+EYIS+L+      S        Q QTV LKVRMDCDGC  K+K  LSS+KG K
Sbjct:     1 MGVGGTLEYISELIGNGGSHSYGKRKKKKQFQTVELKVRMDCDGCVLKIKNSLSSLKGVK 60

Query:    56 SVDVDLKQQKVTVTGFVEPXXXXXXXXXXXXXVEIWPYVPYNIVSNPYVSQAYDKKAPPN 115
             +V+++ KQQKVTV+G+ +               EIWPYVPYN+V+ PY++QAYDKKAPP 
Sbjct:    61 TVEINKKQQKVTVSGYADASKVLKKAKATGKKAEIWPYVPYNLVAQPYIAQAYDKKAPPG 120

Query:   116 HVRAI-PATATVTESTM--DDRYTNMFSDENPNACSIM 150
             +VR + P   T T +    D  YT++FSD+NPNACSIM
Sbjct:   121 YVRKVDPNVTTGTMAVYYDDPSYTSLFSDDNPNACSIM 158

GO:0005737 "cytoplasm" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2026336 HIPP20 "heavy metal associated isoprenylated plant protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 69/152 (45%), Positives = 93/152 (61%)

Query:     1 MG-VEGTIEYISDLLSSVXXXXXXXQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDV 59
             MG ++   EYISD             MQTV +KV+MDCDGC R++K  +SS+KG KSV+V
Sbjct:     1 MGALDSLSEYISDYFRVTRKRRKRKVMQTVNIKVKMDCDGCERRVKNAVSSMKGVKSVEV 60

Query:    60 DLKQQKVTVTGFVEPXXXXXXXXXXXXXVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVR- 118
             + K  KVTV+G+VEP              EIWPYVPYN+V+ PY    YDKKAP  +VR 
Sbjct:    61 NRKIHKVTVSGYVEPKKVLKRIERTGKKAEIWPYVPYNMVAYPYAVGTYDKKAPAGYVRK 120

Query:   119 AIPATATVTESTMDDRYTNMFSDENPNACSIM 150
             +  +   +     ++ Y ++FSDENPNAC++M
Sbjct:   121 SEQSQLQLLPGAPENHYISLFSDENPNACTVM 152

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2017759 HIPP22 "heavy metal associated isoprenylated plant protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 69/152 (45%), Positives = 94/152 (61%)

Query:     5 GTIEYISDLLS-----SVXXXXXXXQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDV 59
             G + Y+S+  S     S+        MQTV +KV++DCDGC RK+K  +SS+KGAKSV+V
Sbjct:     2 GALNYLSEYFSNHFYVSIRKRKKRKVMQTVNIKVKIDCDGCERKIKNAVSSIKGAKSVEV 61

Query:    60 DLKQQKVTVTGFVEPXXXXXXXXXXXXX-VEIWPYVPYNIVSNPYVSQAYDKKAPPNHVR 118
             + K  KVTV+G+V+P               E+WPYVPY +V+ PY + AYDK+APP  VR
Sbjct:    62 NRKMHKVTVSGYVDPKKVLKTVQSTGKKKAELWPYVPYTMVAYPYAAGAYDKRAPPGFVR 121

Query:   119 AIPATATVTESTMDDRYTNMFSDENPNACSIM 150
                       ST DD+  ++FSDENPNAC++M
Sbjct:   122 KSEQAQAQPGST-DDKLMSLFSDENPNACTVM 152

GO:0005737 "cytoplasm" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2156927 HIPP27 "heavy metal associated isoprenylated plant protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 61/131 (46%), Positives = 82/131 (62%)

Query:    25 QMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPXXXXXXXXXX 84
             Q Q V +KV+MDC+GC R+++  +  +KG   V VD KQ K+TV GFV+P          
Sbjct:    17 QFQKVEIKVKMDCEGCERRVRKSVEGMKGVSKVTVDPKQSKLTVEGFVQPSKVVHRVMHR 76

Query:    85 XXX-VEIWPYVPYNIVSNPYVSQAYDKKAPPNHVR---AIPATATVTE-STMDDRYTNMF 139
                  E+WPYVPY +V +PY   AYDKKAPP +VR   A P  A +   S+ + +YT+ F
Sbjct:    77 TGKKAELWPYVPYEVVPHPYAPGAYDKKAPPGYVRNALADPLVAPLARASSFEVKYTSAF 136

Query:   140 SDENPNACSIM 150
             SD+NPNAC+IM
Sbjct:   137 SDDNPNACTIM 147

GO:0005737 "cytoplasm" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2121199 FP6 "farnesylated protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 61/152 (40%), Positives = 92/152 (60%)

Query:     5 GTIEYISDLL--SSVXXXXXXXQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLK 62
             G ++++S++   S         Q+QTV +KV+MDC+GC RK++  +  +KG  SV ++ K
Sbjct:     2 GVLDHVSEMFDCSHGHKIKKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPK 61

Query:    63 QQKVTVTGFVEPXXXXXXXXXXXXX-VEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAI- 120
               KVTV G+V+P              VE+WPYVPY++V++PY +  YDKKAP  +VR + 
Sbjct:    62 AHKVTVVGYVDPNKVVARMSHRTGKKVELWPYVPYDVVAHPYAAGVYDKKAPSGYVRRVD 121

Query:   121 -PATATVTE-STMDDRYTNMFSDENPNACSIM 150
              P  + +   S+ + RYT  FSDENP AC +M
Sbjct:   122 DPGVSQLARASSTEVRYTTAFSDENPAACVVM 153

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0010286 "heat acclimation" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2157457 HIPP21 "heavy metal associated isoprenylated plant protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 57/149 (38%), Positives = 86/149 (57%)

Query:     5 GTIEYISDLLSSVXXXXXXXQ--MQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLK 62
             G  +YIS   S         +  +QTV +KV+MDCDGC R+++ V+  +KG KSV+V+ K
Sbjct:     2 GAFDYISSFCSYTYANAKTKRKPLQTVDIKVKMDCDGCERRVRNVVRRMKGVKSVEVNRK 61

Query:    63 QQKVTVTGFVEPXXXXXXXXXXXXXVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAIPA 122
             Q ++TV G V+P              E WPY+P ++V  P+    YDK+AP  H+R  P 
Sbjct:    62 QSRITVNGHVDPNKVLKRVKSTGKKAEFWPYIPQHMVYYPFAPGMYDKRAPAGHIRN-PT 120

Query:   123 TATVTESTMDDRYTNMFSDENPNA-CSIM 150
              +  T +  ++ Y ++FSD+N +A CSIM
Sbjct:   121 QSFPTANAPEENYVSLFSDDNVHAACSIM 149

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA;IGI

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2131561 HIPP25 "heavy metal associated isoprenylated plant protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 53/152 (34%), Positives = 86/152 (56%)

Query:     5 GTIEYISDLLS-SVXXXXXXXQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQ 63
             G ++++S+    S         +QTV ++V +DC+GC RK++  L  ++G + V ++   
Sbjct:     2 GVLDHVSEYFDCSHGSSKRHKSLQTVDVRVLIDCEGCERKVRRALEGMRGIRDVTIEPNA 61

Query:    64 QKVTVTGFVEPXXXXXXXXXXXXX-VEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAI-- 120
             QKVTV G+VEP               E++P+VPY++V++PY S  YD +AP  +VR    
Sbjct:    62 QKVTVVGYVEPNKVVARIIHRTGKRAELYPFVPYDVVAHPYASGVYDNRAPTGYVRNTEY 121

Query:   121 -PATATVTE-STMDDRYTNMFSDENPNACSIM 150
              P  + +   S+ + RYT  FSDEN +AC +M
Sbjct:   122 DPHVSRLARASSTEVRYTTAFSDENASACVVM 153

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:4515103273 AT3G56891 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 27/72 (37%), Positives = 41/72 (56%)

Query:    26 MQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPXXXXXXXXXXX 85
             +  V L V MDC GC +K++  +S + G  +V++D+ +QKVTVTG+V+            
Sbjct:    15 LSIVELLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTG 74

Query:    86 XXVEIWPYVPYN 97
                E WP+ PYN
Sbjct:    75 RTAEYWPF-PYN 85

GO:0005886 "plasma membrane" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2029914 AT1G29100 "AT1G29100" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
 Identities = 29/82 (35%), Positives = 42/82 (51%)

Query:    31 LKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPXXXXXXXXXXXXX-VE 89
             ++V MDC GC  K++  L  + G   V +D+KQQ+VTVTG  E               + 
Sbjct:     1 MEVPMDCPGCENKVRKALEKMNGVHDVQIDIKQQRVTVTGSAEQKKVLKVARNVTKRDIC 60

Query:    90 IWPYVPYNIVSNPYVSQAYDKK 111
             +W Y PY+  SN Y  + + KK
Sbjct:    61 LWSY-PYHPESNGYNDRYFKKK 81

GO:0005507 "copper ion binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006825 "copper ion transport" evidence=ISS

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_V000320 hypothetical protein (150 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
cd00371	63	cd00371, HMA, Heavy-metal-associated domain (HMA)	9e-13
pfam00403	62	pfam00403, HMA, Heavy-metal-associated domain	1e-09
PLN02957	238	PLN02957, PLN02957, copper, zinc superoxide dismut	1e-06
COG2608	71	COG2608, CopZ, Copper chaperone [Inorganic ion tra	7e-06

>gnl|CDD|238219 cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones

 Score = 59.2 bits (144), Expect = 9e-13
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 35 MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG--FVEPKKVLAAAKATKKKVE 89
          M C GC  K++  L  + G +SV+VDL+  K TV     V P+++L A +    K  
Sbjct: 7  MTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAGYKAR 63

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions. Length = 63

>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain

 Score = 51.1 bits (123), Expect = 1e-09
 Identities = 25/55 (45%), Positives = 33/55 (60%)

Query: 32 KVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKK 86
             M C GCA+K++  LS + G  SV VDL+  KVTVTG  +P K+    KA +K
Sbjct: 4  VPGMTCAGCAKKVEKALSKLPGVSSVSVDLETGKVTVTGDPDPLKLEKLKKAIEK 58

Length = 62

>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 33 VRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKK 87
          V M C+GC   +K  L +++G K+V+VDL  Q V V G    K + AA + T +K
Sbjct: 12 VDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRK 66

Length = 238

>gnl|CDD|225328 COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]

 Score = 41.2 bits (97), Expect = 7e-06
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 26 MQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKAT 84
          M    LKV  M C  C + ++  L  V G  SVDVDL++   TVT   +  KV    +A 
Sbjct: 1  MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVT--FDSNKVD--IEAI 56

Query: 85 KKKVEIWPY 93
           + +E   Y
Sbjct: 57 IEAIEDAGY 65

Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
PF00403	62	HMA: Heavy-metal-associated domain; InterPro: IPR0	99.5
COG2608	71	CopZ Copper chaperone [Inorganic ion transport and	99.39
KOG1603	73	consensus Copper chaperone [Inorganic ion transpor	99.32
KOG4656	247	consensus Copper chaperone for superoxide dismutas	98.9
PLN02957	238	copper, zinc superoxide dismutase	98.48
PRK10671	834	copA copper exporting ATPase; Provisional	98.41
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	98.17
TIGR00003	68	copper ion binding protein. This model describes a	97.99
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	97.6
PRK10671	834	copA copper exporting ATPase; Provisional	97.39
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	97.15
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	97.03
TIGR02052	92	MerP mercuric transport protein periplasmic compon	95.92
COG1888	97	Uncharacterized protein conserved in archaea [Func	92.01
PF01206	70	TusA: Sulfurtransferase TusA; InterPro: IPR001455	90.16
PRK13748	561	putative mercuric reductase; Provisional	89.18
cd00371	63	HMA Heavy-metal-associated domain (HMA) is a conse	88.42
PF02680	95	DUF211: Uncharacterized ArCR, COG1888; InterPro: I	88.11
PRK11018	78	hypothetical protein; Provisional	84.08
cd03421	67	SirA_like_N SirA_like_N, a protein of unknown func	80.95

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures

Probab=99.50  E-value=1.9e-13  Score=84.05  Aligned_cols=58  Identities=40%  Similarity=0.607  Sum_probs=54.0

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCc
Q 031931           30 ALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKK   87 (150)
Q Consensus        30 ~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~   87 (150)
                      +|+| ||+|++|+.+|+++|.+++||.++.+|+.+++++|.+.   .++++|.++|+++||+
T Consensus         1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~   62 (62)
T PF00403_consen    1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE   62 (62)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred             CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence            5889 99999999999999999999999999999999999965   4569999999999985

These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....

>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.39  E-value=4.7e-12  Score=80.33  Aligned_cols=66  Identities=36%  Similarity=0.529  Sum_probs=58.7

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEE--e-cCCHHHHHHHHHhCCCceEEc
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT--G-FVEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~--~-~~~~~~i~~~i~~~G~~~~~~   91 (150)
                      |.+..|+| ||+|.+|+.+|+++|.+++||.++.+++..+++.|+  + .++.++|.++|.++||.+..+
T Consensus         1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~   70 (71)
T COG2608           1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI   70 (71)
T ss_pred             CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence            35678999 999999999999999999999999999999777766  4 478999999999999987654

>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.32  E-value=1.7e-11  Score=78.10  Aligned_cols=68  Identities=54%  Similarity=0.911  Sum_probs=62.1

Q ss_pred             CceEEEEEEcCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCC-CceEEcc
Q 031931           25 QMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATK-KKVEIWP   92 (150)
Q Consensus        25 ~~~~v~l~Vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G-~~~~~~~   92 (150)
                      .+++.++++.|+|.+|..+|++.|..+.||.++.+|..+++++|.|.+++..|++.|++.| .+..+|.
T Consensus         3 ~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~~   71 (73)
T KOG1603|consen    3 PIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELWK   71 (73)
T ss_pred             CccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEec
Confidence            3566788889999999999999999999999999999999999999999999999999888 7777764

>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]

Probab=98.90  E-value=8e-09  Score=77.09  Aligned_cols=67  Identities=30%  Similarity=0.492  Sum_probs=62.7

Q ss_pred             ceEEEEEEcCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEEcc
Q 031931           26 MQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        26 ~~~v~l~Vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      .-+.+|.|.|+|++|+..|++.|..++||.++++|+.++.+.|.+...+.+|..+|+.+|.++.+..
T Consensus         6 ~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G   72 (247)
T KOG4656|consen    6 TYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRG   72 (247)
T ss_pred             ceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEec
Confidence            3457899999999999999999999999999999999999999999999999999999999988864

>PLN02957 copper, zinc superoxide dismutase

Probab=98.48  E-value=2e-06  Score=66.48  Aligned_cols=70  Identities=31%  Similarity=0.445  Sum_probs=62.1

Q ss_pred             ceEEEEEEcCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEEccCCC
Q 031931           26 MQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVP   95 (150)
Q Consensus        26 ~~~v~l~Vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~~~p   95 (150)
                      .+++.|.++|.|..|+.+|++.|.+++||..+.+++..++++|.......++...|++.||.++++....
T Consensus         5 ~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~   74 (238)
T PLN02957          5 ELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGD   74 (238)
T ss_pred             cEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCC
Confidence            3556788899999999999999999999999999999999999877788899999999999998886533

>PRK10671 copA copper exporting ATPase; Provisional

Probab=98.41  E-value=9.5e-07  Score=79.00  Aligned_cols=64  Identities=20%  Similarity=0.409  Sum_probs=57.0

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEEcc
Q 031931           27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        27 ~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      ++++|+| ||+|.+|+.+|+++|.+++||.++.+++.  +.+|++..+.+.+.+.+++.||.++...
T Consensus         3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~~   67 (834)
T PRK10671          3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVSH   67 (834)
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccccc
Confidence            5688999 99999999999999999999999999984  5566666788999999999999998754

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.17  E-value=6.6e-06  Score=72.32  Aligned_cols=63  Identities=25%  Similarity=0.507  Sum_probs=56.4

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CC-HHHHHHHHHhCCCceEE
Q 031931           27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VE-PKKVLAAAKATKKKVEI   90 (150)
Q Consensus        27 ~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~-~~~i~~~i~~~G~~~~~   90 (150)
                      .+..|.| ||+|..|+++|| +|.+++||..+.+|+.++++.|..+   .+ .+++...+++.||.+..
T Consensus         2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~   69 (713)
T COG2217           2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL   69 (713)
T ss_pred             ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence            4568999 999999999999 9999999999999999999998843   44 68999999999998765

>TIGR00003 copper ion binding protein

Probab=97.99  E-value=0.00011  Score=42.52  Aligned_cols=61  Identities=21%  Similarity=0.335  Sum_probs=50.5

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCc
Q 031931           27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKK   87 (150)
Q Consensus        27 ~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~   87 (150)
                      .+..+.+ ++.|..|...+++.+....++....+++....+.+...   .+...+...+...|+.
T Consensus         2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   66 (68)
T TIGR00003         2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYE   66 (68)
T ss_pred             cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence            3457899 99999999999999999999999999999998888742   4666776777777764

This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.60  E-value=0.00021  Score=63.73  Aligned_cols=67  Identities=28%  Similarity=0.561  Sum_probs=61.3

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCceEEccC
Q 031931           27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKVEIWPY   93 (150)
Q Consensus        27 ~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~~~   93 (150)
                      .++.|.| ||.|..|+.+|++.|.+++||.++++++..+++.|..   ...+.++.+.|..+|+.+...+.
T Consensus       146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~~  216 (951)
T KOG0207|consen  146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRPY  216 (951)
T ss_pred             CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeeec
Confidence            6789999 9999999999999999999999999999999999874   37899999999999998777663

>PRK10671 copA copper exporting ATPase; Provisional

Probab=97.39  E-value=0.00074  Score=60.71  Aligned_cols=64  Identities=23%  Similarity=0.441  Sum_probs=56.3

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEEc
Q 031931           28 TVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        28 ~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~   91 (150)
                      ++.+.+ ||+|..|...+++.+..++||..+.+++..+++.+.+..+.+++.+.+++.||.+.++
T Consensus       100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~~  164 (834)
T PRK10671        100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAI  164 (834)
T ss_pred             eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCcccc
Confidence            567889 9999999999999999999999999999999888875567888888899999986544

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.15  E-value=0.00097  Score=59.60  Aligned_cols=60  Identities=18%  Similarity=0.390  Sum_probs=55.6

Q ss_pred             cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCceEEccC
Q 031931           34 RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF--VEPKKVLAAAKATKKKVEIWPY   93 (150)
Q Consensus        34 gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~~~   93 (150)
                      ||.|..|.+.|++++...+||.++.+++.++..+|..+  .+++.+.+.|+..|+++++...
T Consensus         2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied~gf~~~~~~~   63 (951)
T KOG0207|consen    2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIEDMGFEASLLSD   63 (951)
T ss_pred             CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhcccceeeeccc
Confidence            79999999999999999999999999999999998743  7899999999999999998864

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=97.03  E-value=0.0034  Score=55.87  Aligned_cols=66  Identities=24%  Similarity=0.300  Sum_probs=53.7

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec-CCHHHHHHHHHhCCCceEEc
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF-VEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~-~~~~~i~~~i~~~G~~~~~~   91 (150)
                      ..+..+++ ||+|..|..++++.+.+++||..+.+++..+++.+... ...+++...+++.||.+...
T Consensus        52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a~~~  119 (741)
T PRK11033         52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSLRDE  119 (741)
T ss_pred             CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhcccccccc
Confidence            44677899 99999999999999999999999999999999887632 12266777788889876543

>TIGR02052 MerP mercuric transport protein periplasmic component

Probab=95.92  E-value=0.21  Score=31.18  Aligned_cols=63  Identities=25%  Similarity=0.352  Sum_probs=46.7

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCceEE
Q 031931           28 TVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKVEI   90 (150)
Q Consensus        28 ~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~   90 (150)
                      ++.+.+ ++.|..|...++..+....++.....+.......+..   ..+...+...+...|+..++
T Consensus        24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   90 (92)
T TIGR02052        24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSSL   90 (92)
T ss_pred             EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence            456778 9999999999999999999988888887777755542   23555555666677776543

This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).

>COG1888 Uncharacterized protein conserved in archaea [Function unknown]

Probab=92.01  E-value=2.3  Score=28.00  Aligned_cols=67  Identities=13%  Similarity=0.243  Sum_probs=45.4

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEe-----c--CCCEEEEEec-CCHHHHHHHHHhCCCceEEcc
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVD-----L--KQQKVTVTGF-VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd-----~--~~~~v~V~~~-~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      .+++.|.+ --+-.--.--+-+.|++++||..|++.     .  .+-+++|.|. .+-++|.+.|++.|..++.+.
T Consensus         5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSiD   80 (97)
T COG1888           5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSID   80 (97)
T ss_pred             ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeehh
Confidence            45566666 334333334566778899998877753     2  3345566665 899999999999998776554

>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase

Probab=90.16  E-value=1.3  Score=27.13  Aligned_cols=54  Identities=13%  Similarity=0.049  Sum_probs=39.3

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCceEEcc
Q 031931           30 ALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF--VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        30 ~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      ++.+ |+.|+...-+++++|.+++.-         +.+.|..+  ....+|...++..|+.+..+.
T Consensus         2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~   58 (70)
T PF01206_consen    2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDPAAVEDIPRWCEENGYEVVEVE   58 (70)
T ss_dssp             EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHHHHHHHHHHHHTEEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence            5778 999999999999999998442         34444432  456788999999999865553

This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.

>PRK13748 putative mercuric reductase; Provisional

Probab=89.18  E-value=3.4  Score=35.40  Aligned_cols=64  Identities=27%  Similarity=0.400  Sum_probs=49.9

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe--cCCHHHHHHHHHhCCCceEEccC
Q 031931           30 ALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG--FVEPKKVLAAAKATKKKVEIWPY   93 (150)
Q Consensus        30 ~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~~~G~~~~~~~~   93 (150)
                      .+.+ ++.|..|..+++..+...+++....+++......+..  ..+...+...+...|+..+....
T Consensus         3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~~~~   69 (561)
T PRK13748          3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATLADA   69 (561)
T ss_pred             EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeeccCc
Confidence            4668 9999999999999999999998888888888766653  23556666667778887665554

>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones

Probab=88.42  E-value=2.1  Score=21.71  Aligned_cols=54  Identities=37%  Similarity=0.605  Sum_probs=36.0

Q ss_pred             EE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhCC
Q 031931           32 KV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF--VEPKKVLAAAKATK   85 (150)
Q Consensus        32 ~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G   85 (150)
                      .+ ++.|..|...++..+....++.....++......+...  .+...+...+...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (63)
T cd00371           3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAG   59 (63)
T ss_pred             eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHHHcC
Confidence            45 78899999999998888888777777766666555432  24444433444443

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.

>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function

Probab=88.11  E-value=5.9  Score=26.35  Aligned_cols=67  Identities=13%  Similarity=0.258  Sum_probs=44.6

Q ss_pred             CceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEe-----cCCCEE--EEEec-CCHHHHHHHHHhCCCceEEcc
Q 031931           25 QMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVD-----LKQQKV--TVTGF-VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        25 ~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd-----~~~~~v--~V~~~-~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      +.+++.|.| --+-+.- -.+-+.|.+++||..+++.     .....+  +|+|. ++.++|.++|++.|-.++-+.
T Consensus         3 ~irRlVLDVlKP~~p~i-~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSID   78 (95)
T PF02680_consen    3 GIRRLVLDVLKPHEPSI-VELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSID   78 (95)
T ss_dssp             SEEEEEEEEEEESSS-H-HHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEEE
T ss_pred             ceeEEEEEeecCCCCCH-HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEeee
Confidence            345677777 4444443 4567789999999888764     334444  44565 899999999999997766543

; PDB: 3BPD_I 2RAQ_F 2X3D_E.

>PRK11018 hypothetical protein; Provisional

Probab=84.08  E-value=7.2  Score=24.63  Aligned_cols=54  Identities=15%  Similarity=0.022  Sum_probs=40.4

Q ss_pred             EEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe--cCCHHHHHHHHHhCCCceEEc
Q 031931           29 VALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG--FVEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        29 v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~~~G~~~~~~   91 (150)
                      .++.+ |+.|+.-.-+.+++|.+++.         .+.+.|..  ......|...+++.|+.+...
T Consensus         9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~~a~~di~~~~~~~G~~v~~~   65 (78)
T PRK11018          9 YRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLDI   65 (78)
T ss_pred             eeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence            57888 99999999999999998853         23333332  245677888889999987543

>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain

Probab=80.95  E-value=7.4  Score=23.49  Aligned_cols=52  Identities=17%  Similarity=0.172  Sum_probs=36.6

Q ss_pred             EEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe--cCCHHHHHHHHHhCCCceEEcc
Q 031931           31 LKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG--FVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        31 l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      +.+ |+.|+.-.-+++++| ++..         .+.+.|..  ......|...+++.|+.+....
T Consensus         2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~~~G~~~~~~~   56 (67)
T cd03421           2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAESRGYEVSVEE   56 (67)
T ss_pred             cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHHHcCCEEEEEe
Confidence            456 999999999999999 5533         22334332  2445788888899999885443

The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	3e-21
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	7e-20
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	3e-17
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	3e-17
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	3e-15
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	3e-09
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	9e-08
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	2e-06
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	6e-06
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	1e-05
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	1e-05
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	3e-04
2kkh_A	95	Putative heavy metal transporter; zinc transport,	1e-05
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	2e-05
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	2e-05
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	3e-05
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	6e-05
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	1e-04
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	1e-04
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	2e-04
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	2e-04
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	3e-04
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	7e-04

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 81.4 bits (201), Expect = 3e-21
 Identities = 17/74 (22%), Positives = 33/74 (44%)

Query: 18 KKKKKKKQMQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKV 77
               +  + T+   V+M C  C   ++  L  V G + V+V L+ Q V V   +  ++V
Sbjct: 10 SDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEV 69

Query: 78 LAAAKATKKKVEIW 91
           A  + T ++  + 
Sbjct: 70 QALLEGTGRQAVLK 83

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222

 Score = 81.2 bits (200), Expect = 7e-20
 Identities = 19/102 (18%), Positives = 38/102 (37%)

Query: 31  LKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEI 90
             + M C+ C   +K  L +V G  S++ D++QQ ++V   V P  ++   +   K   I
Sbjct: 10  YAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAII 69

Query: 91  WPYVPYNIVSNPYVSQAYDKKAPPNHVRAIPATATVTESTMD 132
                 N  +   +              A+   A + +   +
Sbjct: 70  RGAGKPNSSAVAILETFQKYTIDQKKDTAVRGLARIVQVGEN 111

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249

 Score = 74.8 bits (183), Expect = 3e-17
 Identities = 20/115 (17%), Positives = 42/115 (36%)

Query: 31  LKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEI 90
             + M C+ C   +K  L +V G  S++ D++QQ ++V   V P  ++   +   K   I
Sbjct: 11  YAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAII 70

Query: 91  WPYVPYNIVSNPYVSQAYDKKAPPNHVRAIPATATVTESTMDDRYTNMFSDENPN 145
                 N  +   +              A+   A + +   +    ++  +  P 
Sbjct: 71  RGAGKPNSSAVAILETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPE 125

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Length = 68

 Score = 70.1 bits (172), Expect = 3e-17
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 26 MQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATK 85
          M      V M C GCA  +  VL+ + G K  D+DL  +KV +        +LA  K T 
Sbjct: 1  MPKHEFSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTG 59

Query: 86 KKVEIW 91
          K V   
Sbjct: 60 KTVSYL 65

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Length = 73

 Score = 65.2 bits (159), Expect = 3e-15
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 25 QMQTVALKVRMDCDGCARKMKGVLSSVK-GAKSVDVDLKQQKVTVTGFVEPKKVLAAAKA 83
          +++     V M C GC+  +  VL+ ++     +D+ L++Q V V   +    +L   K 
Sbjct: 3  EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKK 62

Query: 84 TKKKV 88
          T K+V
Sbjct: 63 TGKEV 67

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str} Length = 85

 Score = 50.2 bits (120), Expect = 3e-09
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 15 SSVKKKKKKKQMQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVE 73
           S  ++    Q   ++  V  M C  CA  +KG +       +V  D   + V V G  +
Sbjct: 10 HSSGRENLYFQGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSD 69

Query: 74 PKKVLAA 80
             +   
Sbjct: 70 AAHIAEI 76

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A Length = 64

 Score = 45.4 bits (108), Expect = 9e-08
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 28 TVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAA 80
          T+ L V  + C+ CA  +   + +     +V VDL  +KVT+T  +  +++  A
Sbjct: 2  TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTA 55

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A Length = 66

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 35 MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAA 80
          M C+ C   +   L  V G + V+V L++ +  V G  +PK ++ A
Sbjct: 9  MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQA 54

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Length = 75

 Score = 41.1 bits (97), Expect = 6e-06
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 26 MQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT---GFVEPKKVLAA 80
          + +V + V  M C+ C   ++  +  V G   + V L+++  T+        PK +  A
Sbjct: 1  VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEA 59

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Length = 69

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 26 MQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
          M+   L+V  M C  C + ++  +  + G  +V V+L+  KV V+
Sbjct: 1  MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVS 45

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Length = 202

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 5/108 (4%)

Query: 25  QMQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKA 83
            + T+ L++  M C  C   ++  +  + G +S+ V L+ +   V    +P     +  A
Sbjct: 18  HVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKY--DPSCT--SPVA 73

Query: 84  TKKKVEIWPYVPYNIVSNPYVSQAYDKKAPPNHVRAIPATATVTESTM 131
            ++ +E  P   + +        +       +            + T 
Sbjct: 74  LQRAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTC 121

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Length = 202

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 15  SSVKKKKKKKQMQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT---G 70
            S  + + +    T  + +  M C  C   ++G++S ++G + + V L +   TV     
Sbjct: 110 GSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPA 169

Query: 71  FVEPKKVLAA 80
            + P+++ AA
Sbjct: 170 VISPEELRAA 179

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} Length = 95

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 13 LLSSVKKKKKKKQMQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
          L +  ++KKK K++Q     V  + C      ++ +L S+ G K   V +  + V V 
Sbjct: 2  LQNKEEEKKKVKKLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVV 59

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Length = 79

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 25 QMQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
           + +V + V  M C+ C   ++  +  V G   + V L+++  T+ 
Sbjct: 6  GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATII 51

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A Length = 71

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 35 MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVE 89
          + C  CA K +  +  ++G     V+    K+TVTG    ++V  A      K+ 
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQVEQAGAFEHLKII 66

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Length = 71

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 25 QMQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
           M+ + L+V  M C  C   ++  +  + G + V V L +  V VT
Sbjct: 3  AMEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVT 48

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Length = 72

 Score = 38.4 bits (90), Expect = 6e-05
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 26 MQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
           QTV L V  M C  C   +K  +S V+G   VDV  + ++  VT
Sbjct: 2  TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVT 46

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} Length = 74

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 26 MQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT---GFVEPKKVLAA 80
          M+ + + V  M C  C+  ++  L +V G     V L Q +  V      V+ + +   
Sbjct: 1  MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEE 59

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Length = 66

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 28 TVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT--GFVEPKKVLAA 80
              +V  + C+ C  K++  +  ++G   +DV ++++ V V          +  A
Sbjct: 2  KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEA 57

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} Length = 73

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 26 MQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAA 80
          ++ + L++  + C  C  ++K  L    GAK   VDL +  V      +  K + A
Sbjct: 4  VEKIVLELSGLSCHHCVARVKKALEEA-GAKVEKVDLNEAVVAGNK-EDVDKYIKA 57

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A Length = 72

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 26 MQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT---GFVEPKKVLAA 80
           Q   + +  M C+ C + ++GV+S   G KS+ V L     TV        P+ +  A
Sbjct: 2  TQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGA 60

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Length = 151

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 25 QMQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT---GFVEPKKVLAA 80
          + + +A++V  M C  CA +++  L  + G    +V+L  + V V           +   
Sbjct: 4  EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEK 63

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Length = 71

 Score = 35.3 bits (82), Expect = 7e-04
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 26 MQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
          ++T  ++V  M C  CA  ++  L  +KG     V +   ++TVT
Sbjct: 2  LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVT 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	99.6
4a4j_A	69	Pacszia, cation-transporting ATPase PACS; hydrolas	99.51
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	99.51
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	99.49
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	99.48
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	99.37
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	99.35
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	99.33
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	99.33
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	99.31
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	99.3
1mwy_A	73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	99.3
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	99.29
1q8l_A	84	Copper-transporting ATPase 1; metal binding protei	99.27
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	99.27
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	99.27
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	99.26
1y3j_A	77	Copper-transporting ATPase 1; ferrodoxin-like fold	99.25
2g9o_A	90	Copper-transporting ATPase 1; menkes disease, solu	99.24
1opz_A	76	Potential copper-transporting ATPase; mutation, fo	99.24
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	99.24
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	99.23
1fvq_A	72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	99.22
2kt2_A	69	Mercuric reductase; nmera, MERA, HMA domain, mercu	99.21
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	99.2
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	99.19
2kyz_A	67	Heavy metal binding protein; structural genomics,	99.19
1jww_A	80	Potential copper-transporting ATPase; beta-alpha-b	99.19
2kkh_A	95	Putative heavy metal transporter; zinc transport,	99.18
2ofg_X	111	Zinc-transporting ATPase; ferredoxin-like fold, be	99.17
1yjr_A	75	Copper-transporting ATPase 1; metallochaperone, pr	99.15
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	99.12
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	99.11
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	99.07
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	99.02
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	99.01
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	98.96
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	98.95
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	98.67
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	98.66
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	98.56
1jdq_A	98	TM006 protein, hypothetical protein TM0983; struct	85.77
3bpd_A	100	Uncharacterized protein; heptamer, Mg+2 ION, PSI-2	85.67
3lvj_C	82	Sulfurtransferase TUSA; protein-protein complex, s	85.62
2x3d_A	96	SSO6206; unknown function; 2.70A {Sulfolobus solfa	85.21
2raq_A	97	Conserved protein MTH889; alpha-beta protein, stru	84.61
3hz7_A	87	Uncharacterized protein; alpha-beta protein, struc	81.6

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A

Probab=99.60  E-value=5.5e-15  Score=91.27  Aligned_cols=67  Identities=31%  Similarity=0.474  Sum_probs=62.3

Q ss_pred             ceEEEEEEcCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEEccC
Q 031931           26 MQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPY   93 (150)
Q Consensus        26 ~~~v~l~Vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~~   93 (150)
                      |.+.+|+|||+|.+|+.+|+++|.+++|| ++++|+..++++|.+..++++|.++|+++||.+.++++
T Consensus         1 m~~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~   67 (68)
T 3iwl_A            1 MPKHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL   67 (68)
T ss_dssp             -CEEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred             CceEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence            45678888999999999999999999999 99999999999999989999999999999999998874

>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A

Probab=99.51  E-value=1.7e-13  Score=84.15  Aligned_cols=65  Identities=25%  Similarity=0.501  Sum_probs=60.1

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEE--ecCCHHHHHHHHHhCCCceEEc
Q 031931           27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT--GFVEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        27 ~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~--~~~~~~~i~~~i~~~G~~~~~~   91 (150)
                      ++++|.| ||+|.+|+.+|+++|.+++||..+++|+..++++|.  +..+.++|.++|+++||.++++
T Consensus         2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~   69 (69)
T 4a4j_A            2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL   69 (69)
T ss_dssp             EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEEC
T ss_pred             CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEeC
Confidence            4678999 999999999999999999999999999999999998  4578999999999999998763

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0

Probab=99.51  E-value=1e-13  Score=86.30  Aligned_cols=68  Identities=22%  Similarity=0.344  Sum_probs=62.5

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCceEEccC
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKVEIWPY   93 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~~   93 (150)
                      |++++|.| ||+|.+|+.+|+++|.+++||..+++|+..++++|..+   ++.++|.++|+++||.++++..
T Consensus         1 M~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~   72 (74)
T 3dxs_X            1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILAE   72 (74)
T ss_dssp             CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEEE
T ss_pred             CcEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEccC
Confidence            57789999 99999999999999999999999999999999999843   6899999999999999988753

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}

Probab=99.49  E-value=1.6e-13  Score=85.64  Aligned_cols=66  Identities=23%  Similarity=0.408  Sum_probs=62.3

Q ss_pred             CceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEEcc
Q 031931           25 QMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        25 ~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      .|.+++|.| ||+|.+|+.+|+++|.+ +||..+++|+..++++|... +.++|.++|+++||.+.+.+
T Consensus         3 ~m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~~~~~   69 (73)
T 3fry_A            3 SVEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQAKLRS   69 (73)
T ss_dssp             CCEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEEEECC
T ss_pred             ccEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCceEecC
Confidence            577889999 99999999999999999 99999999999999999987 89999999999999998876

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A

Probab=99.48  E-value=4.9e-13  Score=83.17  Aligned_cols=67  Identities=25%  Similarity=0.409  Sum_probs=62.5

Q ss_pred             ceEEEEEEcCcChhHHHHHHHHHhCCC-CceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEEcc
Q 031931           26 MQTVALKVRMDCDGCARKMKGVLSSVK-GAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        26 ~~~v~l~Vgm~C~~C~~kI~k~L~~~~-GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      |.+++|+|.|+|.+|+.+|+++|.+++ ||.++++|+..++++|.+..+.++|.+.|+++||.+.++.
T Consensus         4 m~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~   71 (73)
T 1cc8_A            4 IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRSGK   71 (73)
T ss_dssp             CEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEEEE
T ss_pred             ceEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCceeee
Confidence            566788889999999999999999999 9999999999999999988889999999999999988775

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=7.1e-12  Score=82.90  Aligned_cols=68  Identities=25%  Similarity=0.423  Sum_probs=63.3

Q ss_pred             ceEEEEEEcCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEEccC
Q 031931           26 MQTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPY   93 (150)
Q Consensus        26 ~~~v~l~Vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~~   93 (150)
                      +.+++|+|.|+|.+|+.+|+++|.+++||..+++|+..++++|....+.++|.+.|+++||.+.++..
T Consensus        18 ~~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~~~~~~   85 (98)
T 2crl_A           18 LCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGM   85 (98)
T ss_dssp             CEEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEES
T ss_pred             ceEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCceEEccC
Confidence            46678888999999999999999999999999999999999999888899999999999999998864

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}

Probab=99.35  E-value=8.6e-12  Score=76.02  Aligned_cols=65  Identities=26%  Similarity=0.461  Sum_probs=58.5

Q ss_pred             cCceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCce
Q 031931           24 KQMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKV   88 (150)
Q Consensus        24 ~~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~   88 (150)
                      ..|.++.|+| ||+|.+|+.+|+++|.+++||..+.+++..++++|..   ..+.+.|.+.|+++||.+
T Consensus         2 ~~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   70 (71)
T 2l3m_A            2 NAMEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDV   70 (71)
T ss_dssp             CSEEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEE
T ss_pred             CCcEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence            3567788999 9999999999999999999999999999999999973   367889999999999975

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A

Probab=99.33  E-value=3.2e-12  Score=76.20  Aligned_cols=60  Identities=25%  Similarity=0.464  Sum_probs=56.2

Q ss_pred             EEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCce
Q 031931           29 VALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKV   88 (150)
Q Consensus        29 v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~   88 (150)
                      ..|.| ||+|.+|+.+|+++|.+++||..+++|+..++++|.+..+.+.|.+.|+++||.+
T Consensus         3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~   63 (64)
T 2xmm_A            3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEV   63 (64)
T ss_dssp             EEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence            46999 9999999999999999999999999999999999997788899999999999965

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A

Probab=99.33  E-value=3.3e-12  Score=77.37  Aligned_cols=62  Identities=31%  Similarity=0.542  Sum_probs=56.9

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEEc
Q 031931           30 ALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        30 ~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~   91 (150)
                      .|.| ||+|.+|+.+|+++|.+++||.++++|+..++++|.+..+.+.|.+.|+++||.+..+
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~   65 (66)
T 2roe_A            3 KLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEVL   65 (66)
T ss_dssp             CEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEEEC
T ss_pred             EEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcEec
Confidence            5889 9999999999999999999999999999999999965678899999999999987653

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}

Probab=99.31  E-value=3.9e-12  Score=82.02  Aligned_cols=66  Identities=21%  Similarity=0.310  Sum_probs=58.5

Q ss_pred             ccCceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCce
Q 031931           23 KKQMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKV   88 (150)
Q Consensus        23 ~~~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~   88 (150)
                      ...+.++.|.| ||+|..|+.+|+++|.+++||.++++|+..++++|...++.++|.+.|+++||.+
T Consensus        18 ~~~~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~   84 (85)
T 2k2p_A           18 YFQGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTP   84 (85)
T ss_dssp             ----CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCC
T ss_pred             cccccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence            34566788999 9999999999999999999999999999999999997788999999999999964

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A

Probab=99.30  E-value=2.6e-11  Score=73.60  Aligned_cols=64  Identities=22%  Similarity=0.450  Sum_probs=57.0

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCceEE
Q 031931           27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF--VEPKKVLAAAKATKKKVEI   90 (150)
Q Consensus        27 ~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~   90 (150)
                      +++.|.| ||+|.+|+.+|+++|.+++||.++++|+..++++|...  .+.+.|.+.|+++||.+.+
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~   69 (71)
T 2xmw_A            3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV   69 (71)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEE
T ss_pred             cEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCcee
Confidence            4578999 99999999999999999999999999999999999843  5778899999999998764

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A

Probab=99.30  E-value=2.7e-11  Score=74.57  Aligned_cols=66  Identities=24%  Similarity=0.306  Sum_probs=58.4

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecC-CHHHHHHHHHhCCCceEEc
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFV-EPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~-~~~~i~~~i~~~G~~~~~~   91 (150)
                      |.++.|.| ||+|.+|+.+|+++|.+++||..+++|+..++++|.... ..+.|.+.|.++||.+...
T Consensus         2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~~~   69 (73)
T 1mwy_A            2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRDE   69 (73)
T ss_dssp             CEEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEEEC
T ss_pred             CeEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCccccc
Confidence            66788999 999999999999999999999999999999999998542 3678889999999987643

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A

Probab=99.29  E-value=2.6e-11  Score=73.94  Aligned_cols=65  Identities=29%  Similarity=0.413  Sum_probs=58.3

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCceEE
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKVEI   90 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~   90 (150)
                      ++++.|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|...   .+.+.|.+.|.++||.+.+
T Consensus         2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~   70 (72)
T 1osd_A            2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSV   70 (72)
T ss_dssp             EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEE
T ss_pred             ceEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence            35678999 99999999999999999999999999999999999743   5788999999999998765

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A

Probab=99.27  E-value=2.9e-11  Score=76.90  Aligned_cols=68  Identities=18%  Similarity=0.331  Sum_probs=60.9

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCceEEccC
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKVEIWPY   93 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~~   93 (150)
                      ..++.|.| ||+|.+|+.+|+++|.+++||..+++|+..++++|...   ++.+.|.+.|.++||.+.+...
T Consensus         8 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~   79 (84)
T 1q8l_A            8 EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQ   79 (84)
T ss_dssp             CEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSCC
T ss_pred             ceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEecCC
Confidence            45678999 99999999999999999999999999999999999853   5788999999999999877664

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A

Probab=99.27  E-value=3e-11  Score=73.64  Aligned_cols=64  Identities=23%  Similarity=0.411  Sum_probs=57.6

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCceEEc
Q 031931           28 TVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        28 ~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~   91 (150)
                      +..|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|...   .+.+.|.+.|+++||.+.+.
T Consensus         4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   71 (72)
T 1aw0_A            4 ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS   71 (72)
T ss_dssp             EEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEEC
T ss_pred             EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcEeC
Confidence            467999 99999999999999999999999999999999999853   57789999999999987653

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A

Probab=99.27  E-value=6.8e-11  Score=72.89  Aligned_cols=65  Identities=22%  Similarity=0.389  Sum_probs=58.6

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCceEEcc
Q 031931           28 TVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        28 ~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      ++.|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|...   .+.+.|.+.|+++||.+.+..
T Consensus         3 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~   71 (75)
T 3cjk_B            3 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN   71 (75)
T ss_dssp             EEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEeec
Confidence            467999 99999999999999999999999999999999999843   578899999999999887654

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A

Probab=99.26  E-value=4.8e-11  Score=71.42  Aligned_cols=63  Identities=27%  Similarity=0.431  Sum_probs=56.4

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCce
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKV   88 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~   88 (150)
                      |.+..|.| ||+|.+|+.+|+++|..++||..+.+++..++++|...   .+.+.|.+.|.++||.+
T Consensus         1 m~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   67 (69)
T 2qif_A            1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV   67 (69)
T ss_dssp             CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence            34568999 99999999999999999999999999999999999743   57888999999999864

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A

Probab=99.25  E-value=2e-11  Score=75.97  Aligned_cols=67  Identities=18%  Similarity=0.246  Sum_probs=60.5

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCceEEcc
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      |+++.|.| ||+|.+|+.+|+++|.+++||..+++++..++++|...   .+.+.|.+.|.++||.+.++.
T Consensus         2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~   72 (77)
T 1y3j_A            2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIE   72 (77)
T ss_dssp             CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEES
T ss_pred             CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEECC
Confidence            67788999 99999999999999999999999999999999999743   577889999999999887754

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A

Probab=99.24  E-value=5.1e-11  Score=77.14  Aligned_cols=67  Identities=24%  Similarity=0.362  Sum_probs=59.4

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhC---CCceEEccC
Q 031931           27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKAT---KKKVEIWPY   93 (150)
Q Consensus        27 ~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~---G~~~~~~~~   93 (150)
                      .++.|.| ||+|.+|+.+|+++|.+++||.++++|+..++++|..   .++.++|.+.|.++   ||.+.++.+
T Consensus         3 ~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~~~   76 (90)
T 2g9o_A            3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSE   76 (90)
T ss_dssp             EEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECCCC
T ss_pred             cEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEeCC
Confidence            3467999 9999999999999999999999999999999999984   35778999999999   598877764

>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A

Probab=99.24  E-value=4.8e-11  Score=73.21  Aligned_cols=68  Identities=21%  Similarity=0.329  Sum_probs=60.2

Q ss_pred             cCceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCceEEc
Q 031931           24 KQMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        24 ~~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~   91 (150)
                      .++.+..|+| ||+|.+|+.+|+++|.+++||..+.+++..++++|..   ..+.+.|.+.|.++||.+..+
T Consensus         3 ~~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   74 (76)
T 1opz_A            3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIE   74 (76)
T ss_dssp             CCCEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEECC
T ss_pred             ccceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceecC
Confidence            3567788999 9999999999999999999999999999999999974   357888999999999987654

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A

Probab=99.24  E-value=3.8e-11  Score=74.90  Aligned_cols=68  Identities=21%  Similarity=0.379  Sum_probs=60.4

Q ss_pred             CceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCceEEcc
Q 031931           25 QMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        25 ~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      .+.++.|.| ||+|.+|+.+|+++|.+++||..+++++..++++|...   .+.++|.+.|+++||.+.+..
T Consensus         6 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~   77 (79)
T 1kvi_A            6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN   77 (79)
T ss_dssp             TCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEECC
T ss_pred             CcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEecC
Confidence            456788999 99999999999999999999999999999999999843   577899999999999877654

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1

Probab=99.23  E-value=6.8e-11  Score=71.13  Aligned_cols=61  Identities=25%  Similarity=0.457  Sum_probs=55.7

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCceEE
Q 031931           30 ALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKVEI   90 (150)
Q Consensus        30 ~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~   90 (150)
                      .|.| ||+|.+|+.+|+++|.+++||..+++|+..++++|...   .+.++|.+.|++.||.+++
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~   67 (68)
T 1cpz_A            3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV   67 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEE
T ss_pred             EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCccc
Confidence            5899 99999999999999999999999999999999999843   5788999999999998765

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B

Probab=99.22  E-value=6.2e-11  Score=72.21  Aligned_cols=65  Identities=25%  Similarity=0.367  Sum_probs=58.7

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCceEEcc
Q 031931           28 TVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF--VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        28 ~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      ++.|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|...  .+.+.|.+.|++.||.+.++.
T Consensus         3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~~   70 (72)
T 1fvq_A            3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR   70 (72)
T ss_dssp             EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEEE
T ss_pred             EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEcc
Confidence            467999 99999999999999999999999999999999999843  567889999999999988764

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A

Probab=99.21  E-value=8.5e-11  Score=71.20  Aligned_cols=62  Identities=27%  Similarity=0.401  Sum_probs=55.9

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCceEEc
Q 031931           30 ALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF--VEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        30 ~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~   91 (150)
                      .|.| ||+|.+|+.+|+++|.+++||..+++|+..++++|...  .+.++|.+.|+++||.+.+.
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~   67 (69)
T 2kt2_A            3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKATLA   67 (69)
T ss_dssp             CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEECC
T ss_pred             EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceEeC
Confidence            5889 99999999999999999999999999999999998743  57889999999999987653

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}

Probab=99.20  E-value=6.8e-11  Score=71.37  Aligned_cols=64  Identities=23%  Similarity=0.361  Sum_probs=57.0

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCceE
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKVE   89 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~   89 (150)
                      +.+..|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|...   .+.+.+.+.|.++||.+.
T Consensus         2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~   69 (71)
T 2ldi_A            2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLA   69 (71)
T ss_dssp             CEEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEEE
T ss_pred             cEEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcc
Confidence            45678999 99999999999999999999999999999999999743   567889999999999764

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}

Probab=99.19  E-value=7.5e-11  Score=70.52  Aligned_cols=61  Identities=18%  Similarity=0.376  Sum_probs=54.7

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCce
Q 031931           28 TVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF--VEPKKVLAAAKATKKKV   88 (150)
Q Consensus        28 ~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~   88 (150)
                      +..|.| ||+|.+|+.+|+++|.+++||..+++|+..++++|...  .+.+.|.+.|+++||.+
T Consensus         2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~   65 (66)
T 1yg0_A            2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEV   65 (66)
T ss_dssp             EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred             eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence            357899 99999999999999999999999999999999999843  47788999999999864

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}

Probab=99.19  E-value=4.5e-11  Score=72.55  Aligned_cols=60  Identities=25%  Similarity=0.397  Sum_probs=54.3

Q ss_pred             EEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEE
Q 031931           29 VALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEI   90 (150)
Q Consensus        29 v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~   90 (150)
                      ..|.| ||+|.+|+.+|+++|.++ ||..+.+|+..++++|....+ ++|.+.|+++||.+..
T Consensus         3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~~~   63 (67)
T 2kyz_A            3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPVES   63 (67)
T ss_dssp             EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCCCB
T ss_pred             EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCceee
Confidence            57999 999999999999999999 999999999999999986644 8899999999997654

>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A

Probab=99.19  E-value=9.1e-11  Score=72.98  Aligned_cols=67  Identities=18%  Similarity=0.324  Sum_probs=59.9

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCceEEcc
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      |.+..|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|..   ..+.+.|.+.|.++||.+.++.
T Consensus         2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~   72 (80)
T 1jww_A            2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKG   72 (80)
T ss_dssp             CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEECC
T ss_pred             ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEecC
Confidence            45678999 9999999999999999999999999999999999974   3578889999999999887765

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}

Probab=99.18  E-value=2e-10  Score=74.69  Aligned_cols=72  Identities=19%  Similarity=0.285  Sum_probs=63.3

Q ss_pred             cccCceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCceEEccC
Q 031931           22 KKKQMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKVEIWPY   93 (150)
Q Consensus        22 ~~~~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~~   93 (150)
                      ....|.++.|.| ||+|.+|+.+|+++|..++||..+.+++..++++|...   ++.+.|...|..+||.+.+...
T Consensus        11 ~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~   86 (95)
T 2kkh_A           11 KVKKLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRVN   86 (95)
T ss_dssp             CSSCSEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCC
T ss_pred             cccceEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEecC
Confidence            444578889999 99999999999999999999999999999999999843   4678899999999998877653

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A

Probab=99.15  E-value=1.4e-10  Score=71.11  Aligned_cols=64  Identities=19%  Similarity=0.361  Sum_probs=56.7

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCceEEc
Q 031931           28 TVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        28 ~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~   91 (150)
                      ++.|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|...   .+.+.|.+.|.++||.+...
T Consensus         5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   72 (75)
T 1yjr_A            5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSLV   72 (75)
T ss_dssp             CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEES
T ss_pred             EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCceee
Confidence            467999 99999999999999999999999999999999999853   45678899999999987654

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=99.12  E-value=2.5e-10  Score=79.31  Aligned_cols=66  Identities=17%  Similarity=0.324  Sum_probs=59.3

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCceEEc
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~   91 (150)
                      ..++.|+| ||+|.+|+.+|+++|.+++||.++++|+..++++|...   ++.++|.+.|+++||.+.++
T Consensus        79 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~  148 (149)
T 2ew9_A           79 DGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLA  148 (149)
T ss_dssp             SSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEECC
T ss_pred             cceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceEec
Confidence            35678999 99999999999999999999999999999999999843   57899999999999987653

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=99.11  E-value=2.9e-10  Score=79.33  Aligned_cols=68  Identities=18%  Similarity=0.306  Sum_probs=61.3

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCceEEccC
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKVEIWPY   93 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~~~   93 (150)
                      ..++.|.| ||+|.+|+.+|+++|.+++||.++++|+..++++|..   .++.++|.+.|+++||.+.++..
T Consensus        73 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~  144 (151)
T 1p6t_A           73 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE  144 (151)
T ss_dssp             CEEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCS
T ss_pred             ccccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEcCc
Confidence            35678999 9999999999999999999999999999999999984   36889999999999999887654

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=99.07  E-value=1e-09  Score=82.86  Aligned_cols=69  Identities=23%  Similarity=0.427  Sum_probs=62.6

Q ss_pred             eEEEEEEcCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEEccCCC
Q 031931           27 QTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVP   95 (150)
Q Consensus        27 ~~v~l~Vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~~~p   95 (150)
                      .+++|+|.|+|.+|+.+|+++|++++||.++++|+..++++|.+..++++|.++|+++||.+.++....
T Consensus         6 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~~~~~~~   74 (222)
T 1qup_A            6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGK   74 (222)
T ss_dssp             EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECCSC
T ss_pred             eEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCccccccCCC
Confidence            345788889999999999999999999999999999999999988889999999999999998876543

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A

Probab=99.02  E-value=5.5e-10  Score=68.27  Aligned_cols=58  Identities=21%  Similarity=0.394  Sum_probs=50.3

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceE
Q 031931           28 TVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVE   89 (150)
Q Consensus        28 ~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~   89 (150)
                      +..|.| ||+|.+|+.+|+++|.+++||..+++|+..++++|....+    .+.|.++||.+.
T Consensus         4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~~   62 (71)
T 2aj0_A            4 KTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFEH   62 (71)
T ss_dssp             EEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTTT
T ss_pred             EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCcc
Confidence            567999 9999999999999999999999999999999999987654    446678887643

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=99.01  E-value=1.7e-09  Score=79.47  Aligned_cols=67  Identities=21%  Similarity=0.423  Sum_probs=59.7

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCceEEccC
Q 031931           27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKVEIWPY   93 (150)
Q Consensus        27 ~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~~   93 (150)
                      .++.|+| ||+|.+|+.+|+++|.+++||..+.+++..++++|...   ++.++|.+.|.++||.+.++..
T Consensus       122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~  192 (202)
T 2rop_A          122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSE  192 (202)
T ss_dssp             EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC--
T ss_pred             eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcCC
Confidence            5678999 99999999999999999999999999999999999843   5788999999999999887653

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=98.96  E-value=3.4e-09  Score=73.45  Aligned_cols=67  Identities=19%  Similarity=0.290  Sum_probs=59.8

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCceEEcc
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      |+++.|.| ||+|.+|+.+|+++|.+++||..+.+++..+++.|..   ..+.+++.+.|.+.||.+.+..
T Consensus         3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~   73 (149)
T 2ew9_A            3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVME   73 (149)
T ss_dssp             CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECS
T ss_pred             cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEeec
Confidence            67789999 9999999999999999999999999999999999874   2567889999999999877643

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=98.95  E-value=3.6e-09  Score=81.07  Aligned_cols=69  Identities=23%  Similarity=0.427  Sum_probs=62.2

Q ss_pred             eEEEEEEcCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEEccCCC
Q 031931           27 QTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWPYVP   95 (150)
Q Consensus        27 ~~v~l~Vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~~~p   95 (150)
                      .+++|+|.|+|.+|+.+|+++|++++||.++++|+..++++|.+..++++|.++|+++||.+.++....
T Consensus         7 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~   75 (249)
T 1jk9_B            7 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGK   75 (249)
T ss_dssp             EEEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCCEEEEESS
T ss_pred             eeEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCcccccCCc
Confidence            345688889999999999999999999999999999999999987889999999999999988876533

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=98.67  E-value=9.6e-08  Score=66.29  Aligned_cols=64  Identities=20%  Similarity=0.358  Sum_probs=55.7

Q ss_pred             CceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCce
Q 031931           25 QMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATKKKV   88 (150)
Q Consensus        25 ~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~   88 (150)
                      .+.+..|.| ||+|.+|+.+|++.|.+++||..+.+++..+++.|...   .+...+.+.+++.||.+
T Consensus         4 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   71 (151)
T 1p6t_A            4 EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV   71 (151)
T ss_dssp             CCEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred             cceEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCcc
Confidence            345677999 99999999999999999999999999999999988732   56788888999999864

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=98.66  E-value=7.2e-08  Score=70.71  Aligned_cols=65  Identities=23%  Similarity=0.403  Sum_probs=55.6

Q ss_pred             CceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCC---CceE
Q 031931           25 QMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF---VEPKKVLAAAKATK---KKVE   89 (150)
Q Consensus        25 ~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G---~~~~   89 (150)
                      .+.++.|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|...   ++.+.|.+.|+++|   |.+.
T Consensus        18 ~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~~~gg~~v~   89 (202)
T 2rop_A           18 HVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVS   89 (202)
T ss_dssp             --CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTSSSSCSEEE
T ss_pred             ccEEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHhccCCeEEE
Confidence            466788999 99999999999999999999999999999999999743   57788999998883   5554

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=98.56  E-value=1.5e-07  Score=81.55  Aligned_cols=62  Identities=16%  Similarity=0.284  Sum_probs=56.9

Q ss_pred             EEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCceEE
Q 031931           29 VALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKVEI   90 (150)
Q Consensus        29 v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~   90 (150)
                      ++|+| ||+|.+|+.+|+++|++++||.++++|+.+++++|..   ..+.+++.+.|++.||++..
T Consensus         4 ~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~~~   69 (723)
T 3j09_A            4 RTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVVD   69 (723)
T ss_dssp             EEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEESS
T ss_pred             EEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCcccc
Confidence            57999 9999999999999999999999999999999999984   26889999999999998643

>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3

Probab=85.77  E-value=4.2  Score=26.04  Aligned_cols=55  Identities=16%  Similarity=0.062  Sum_probs=41.5

Q ss_pred             EEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCceEEcc
Q 031931           29 VALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF--VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        29 v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      .+|.+ |+.|+.-.-+++++|.+++.         .+.+.|..+  .....|.+.++..|+.+....
T Consensus        27 ~~LD~rGl~CP~Pvl~tkkaL~~l~~---------Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~e   84 (98)
T 1jdq_A           27 KTLDVRGEVCPVPDVETKRALQNMKP---------GEILEVWIDYPMSKERIPETVKKLGHEVLEIE   84 (98)
T ss_dssp             EEEECSSCCSSHHHHHHHHHHHTCCT---------TCEEEEEESSCTHHHHHHHHHHHSSCCEEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence            56889 99999999999999998743         233444432  346788888899999887654

>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1

Probab=85.67  E-value=2.8  Score=27.06  Aligned_cols=67  Identities=10%  Similarity=0.153  Sum_probs=47.7

Q ss_pred             CceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEe-----cCCCEE--EEEec-CCHHHHHHHHHhCCCceEEcc
Q 031931           25 QMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVD-----LKQQKV--TVTGF-VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        25 ~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd-----~~~~~v--~V~~~-~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      +.+++.|.| -.+-+.- -.+-+.|.+++||..+++.     ..+..+  +|+|. ++-++|.++|++.|-.+.-+.
T Consensus         5 ~iRRlVLDVlKPh~P~i-vdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvIHSID   80 (100)
T 3bpd_A            5 GLRRLVLDVLKPHEPKT-IVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSVD   80 (100)
T ss_dssp             SEEEEEEEEEEESCSCH-HHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEEEEE
T ss_pred             cceEEEEEecCCCCCCH-HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence            356777887 4444443 4667789999999988764     344444  44565 899999999999998766554

>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A

Probab=85.62  E-value=4.5  Score=24.81  Aligned_cols=55  Identities=4%  Similarity=0.090  Sum_probs=40.6

Q ss_pred             EEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe--cCCHHHHHHHHHhCCCceEEcc
Q 031931           29 VALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG--FVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        29 v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      .++.+ |+.|+.-.-+++++|.+++.         .+.+.|..  ......|...++..|+.+....
T Consensus        11 ~~lD~rGl~CP~Pvl~~kkal~~l~~---------G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~~   68 (82)
T 3lvj_C           11 HTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPGFCTFMEHELVAKE   68 (82)
T ss_dssp             EEEECTTCCTTHHHHHHHHHHHTSCT---------TCEEEEEECCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence            56888 99999999999999998742         22333332  2445678888899999876653

>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}

Probab=85.21  E-value=4.1  Score=26.18  Aligned_cols=66  Identities=9%  Similarity=0.200  Sum_probs=46.4

Q ss_pred             ceEEEEEE--cCcChhHHHHHHHHHhCCCCceEEEEe-----cCCCEE--EEEec-CCHHHHHHHHHhCCCceEEcc
Q 031931           26 MQTVALKV--RMDCDGCARKMKGVLSSVKGAKSVDVD-----LKQQKV--TVTGF-VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        26 ~~~v~l~V--gm~C~~C~~kI~k~L~~~~GV~~v~vd-----~~~~~v--~V~~~-~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      .+++.|.|  .++-+.- -.+-+.|.+++||..+++.     ..+..+  +|+|. .+-++|.++|++.|-.++-+.
T Consensus         4 irRlVLDVlKP~h~P~i-vd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~IHSID   79 (96)
T 2x3d_A            4 IRRLVLDVLKPIRGTSI-VDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAIHSID   79 (96)
T ss_dssp             EEEEEEEEEEESSSSCH-HHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEEEEEE
T ss_pred             eEEEEEEcccCCCCCCH-HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence            45667777  3355544 3566779999999988764     334444  44565 899999999999997766554

>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1

Probab=84.61  E-value=4  Score=26.26  Aligned_cols=67  Identities=12%  Similarity=0.227  Sum_probs=47.8

Q ss_pred             CceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEE-----ecCCCEEE--EEec-CCHHHHHHHHHhCCCceEEcc
Q 031931           25 QMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDV-----DLKQQKVT--VTGF-VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        25 ~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~v-----d~~~~~v~--V~~~-~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      +.+++.|.| -.+-+.- -.+-+.|.+++||..+++     |..+..+.  |+|. ++-++|.++|++.|-.+.-+.
T Consensus         5 ~irRlVLDVlKPh~p~i-~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~IHSID   80 (97)
T 2raq_A            5 GLIRIVLDILKPHEPII-PEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSVD   80 (97)
T ss_dssp             SEEEEEEEEECCSCSCH-HHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEEE
T ss_pred             CceEEEEEecCCCCCCH-HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence            456778888 5554443 456677889999888875     44455444  4565 899999999999998766554

>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}

Probab=81.60  E-value=3.3  Score=25.88  Aligned_cols=54  Identities=15%  Similarity=0.086  Sum_probs=39.8

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCC-CceEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCceEEcc
Q 031931           30 ALKV-RMDCDGCARKMKGVLSSVK-GAKSVDVDLKQQKVTVTGF--VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        30 ~l~V-gm~C~~C~~kI~k~L~~~~-GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      +|.+ |+.|+.-.-+++++|.+++ .         .+.+.|..+  ...+.|...++..|+.+....
T Consensus         3 ~lD~rGl~CP~Pvl~~kkal~~l~~~---------G~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~~   60 (87)
T 3hz7_A            3 TIDALGQVCPIPVIRAKKALAELGEA---------GGVVTVLVDNDISRQNLQKMAEGMGYQSEYLE   60 (87)
T ss_dssp             EEECTTCCTTHHHHHHHHHHHTTGGG---------CCEEEEEESSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             EEEcCCCCCCHHHHHHHHHHHhccCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence            4778 9999999999999999883 2         233444432  345678888899999886654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1cc8a_	72	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	1e-12
d1qupa2	72	d.58.17.1 (A:2-73) Copper chaperone for superoxide	6e-12
d1fe0a_	66	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	7e-12
d1osda_	72	d.58.17.1 (A:) Mercuric ion binding protein MerP {	1e-08
d1kvja_	79	d.58.17.1 (A:) Menkes copper-transporting ATPase {	3e-08
d1sb6a_	64	d.58.17.1 (A:) Copper chaperone {Synechocystis sp.	6e-08
d2ggpb1	72	d.58.17.1 (B:1-72) Copper transporter domain ccc2a	8e-08
d2qifa1	69	d.58.17.1 (A:1-69) Copper chaperone {Bacillus subt	1e-07
d1mwza_	73	d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,	4e-07
d1p6ta1	72	d.58.17.1 (A:1-72) Potential copper-translocating	4e-07
d2aw0a_	72	d.58.17.1 (A:) Menkes copper-transporting ATPase {	7e-07
d1p6ta2	79	d.58.17.1 (A:73-151) Potential copper-translocatin	9e-07
d1cpza_	68	d.58.17.1 (A:) Copper chaperone {Enterococcus hira	1e-06
d1q8la_	84	d.58.17.1 (A:) Menkes copper-transporting ATPase {	2e-04

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (139), Expect = 1e-12
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 25 QMQTVALKVRMDCDGCARKMKGVLSSVK-GAKSVDVDLKQQKVTVTGFVEPKKVLAAAKA 83
          +++     V M C GC+  +  VL+ ++     +D+ L++Q V V   +    +L   K 
Sbjct: 2  EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKK 61

Query: 84 TKKKV 88
          T K+V
Sbjct: 62 TGKEV 66

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (134), Expect = 6e-12
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 31 LKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEI 90
            + M C+ C   +K  L +V G  S++ D++QQ ++V   V P  ++   +   K   I
Sbjct: 10 YAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAII 69

Query: 91 W 91
           
Sbjct: 70 R 70

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Length = 66

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 7e-12
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 31 LKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEI 90
            V M C GCA  +  VL+ + G    D+DL  +KV +        +LA  K T K V  
Sbjct: 5  FSVDMTCGGCAEAVSRVLNKLGG-VKYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSY 63

Query: 91 W 91
           
Sbjct: 64 L 64

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

 Score = 47.0 bits (112), Expect = 1e-08
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 27 QTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT---GFVEPKKVLAA 80
          QTV L V  M C  C   +K  +S V+G   VDV  + ++  VT        +K+  A
Sbjct: 3  QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKA 60

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 3e-08
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 26 MQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT---GFVEPKKVLAAA 81
          + +V + V  M C+ C   ++  +  V G   + V L+++  T+        PK +  A 
Sbjct: 7  VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 66

Query: 82 KATKKKVEI 90
                  I
Sbjct: 67 DDMGFDAVI 75

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

 Score = 44.9 bits (106), Expect = 6e-08
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 28 TVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKK 86
          T+ L V  + C+ CA  +   + +     +V VDL  +KVT+T  +  +++  A  +   
Sbjct: 2  TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGH 61

Query: 87 KVE 89
          +VE
Sbjct: 62 EVE 64

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.7 bits (106), Expect = 8e-08
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 27 QTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT--GFVEPKKVLAAAKA 83
          + V L V  M C  C   +   L ++KG    D+ L   +  VT    V    +    + 
Sbjct: 2  REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIED 61

Query: 84 TKKKVEIW 91
               EI 
Sbjct: 62 CGFDCEIL 69

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Length = 69

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

 Score = 44.0 bits (104), Expect = 1e-07
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 26 MQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT---GFVEPKKVLAA 80
          M+   L+V  M C  C + ++  +  + G  +V V+L+  KV V+     V  K +  A
Sbjct: 1  MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADA 59

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (101), Expect = 4e-07
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 26 MQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAA 81
              + KV  MDC  CARK++  +  + G   V V    +K+ V    + +  + +A
Sbjct: 2  GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESA 58

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.8 bits (101), Expect = 4e-07
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 25 QMQTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT---GFVEPKKVLAA 80
          + + +A++V  M C  CA +++  L  + G    +V+L  + V V           +   
Sbjct: 4  EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEK 63

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 7e-07
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 27 QTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT---GFVEPKKVLAA 80
          Q   + +  M C+ C + ++GV+S   G KS+ V L     TV        P+ +  A
Sbjct: 3  QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGA 60

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.2 bits (99), Expect = 9e-07
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 27 QTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT---GFVEPKKVLAAAK 82
          +     +  M C  CA +++  L+ ++G  +  V+   + VTV           +  A  
Sbjct: 2  EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD 61

Query: 83 ATKKKVEI 90
              K+++
Sbjct: 62 KLGYKLKL 69

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Length = 68

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

 Score = 41.7 bits (98), Expect = 1e-06
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 35 MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT---GFVEPKKVLAAAKATKKKVEI 90
          M C+ C  +++  +  + G K V V LK++K  V      V+  ++  A      + E+
Sbjct: 9  MSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 2e-04
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 27 QTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATK 85
            + +KV  M C  C   ++G +  ++G + + V L  Q+ T+        V    K  +
Sbjct: 9  VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIE 68

Query: 86 K 86
           
Sbjct: 69 A 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1cc8a_	72	ATX1 metallochaperone protein (ATOX1) {Baker's yea	99.68
d1fe0a_	66	ATX1 metallochaperone protein (ATOX1) {Human (Homo	99.68
d1qupa2	72	Copper chaperone for superoxide dismutase, N-termi	99.67
d2ggpb1	72	Copper transporter domain ccc2a {Baker's yeast (Sa	99.62
d1sb6a_	64	Copper chaperone {Synechocystis sp. pcc 6803, Scat	99.61
d2qifa1	69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	99.61
d1osda_	72	Mercuric ion binding protein MerP {Ralstonia metal	99.59
d1cpza_	68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	99.59
d1kvja_	79	Menkes copper-transporting ATPase {Human (Homo sap	99.58
d2aw0a_	72	Menkes copper-transporting ATPase {Human (Homo sap	99.57
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	99.55
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	99.53
d1p6ta2	79	Potential copper-translocating P-type ATPase CopA	99.51
d1mwza_	73	Metal ion-transporting ATPase ZntA, N-terminal dom	99.5
d3bpda1	91	Uncharacterized protein AF1549 {Archaeoglobus fulg	88.35
d2raqa1	93	Uncharacterized protein MTH889 {Methanobacterium t	87.46
d1dcja_	81	SirA {Escherichia coli [TaxId: 562]}	87.42
d1jdqa_	98	Hypothetical protein TM0983 {Thermotoga maritima [	86.83

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=1.9e-16  Score=98.36  Aligned_cols=66  Identities=26%  Similarity=0.438  Sum_probs=62.5

Q ss_pred             CceEEEEEEcCcChhHHHHHHHHHhCC-CCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEE
Q 031931           25 QMQTVALKVRMDCDGCARKMKGVLSSV-KGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEI   90 (150)
Q Consensus        25 ~~~~v~l~Vgm~C~~C~~kI~k~L~~~-~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~   90 (150)
                      ++++++|+|+|+|.+|+.+|+++|.++ +||.++++|+.+++++|.+.+++++|+++|+++||++.-
T Consensus         2 ~~kt~~f~V~MtC~~C~~~Ie~~L~~l~~gV~~v~v~~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~   68 (72)
T d1cc8a_           2 EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRS   68 (72)
T ss_dssp             CCEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEE
T ss_pred             CcEEEEEEECcCcHHHHHHHHHHHHcCcCceEEEEEECCCCEEEEeecCCHHHHHHHHHHHCCccCC
Confidence            678999999999999999999999999 599999999999999999999999999999999998763

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

Probab=99.68  E-value=1e-16  Score=98.03  Aligned_cols=64  Identities=31%  Similarity=0.475  Sum_probs=60.7

Q ss_pred             EEEEEEcCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEEcc
Q 031931           28 TVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        28 ~v~l~Vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      +.+|+|+|+|.+|+.+|+++|++++|+ ++++|+.+++++|++++++++|+++|+++||+++++.
T Consensus         2 k~ef~V~M~C~~C~~~I~~aL~~~~gv-~v~v~~~~~~v~V~~~~~~~~i~~~I~~~Gy~a~lig   65 (66)
T d1fe0a_           2 KHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLG   65 (66)
T ss_dssp             EEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEE
T ss_pred             CEEEEEccCchHHHHHHHHHHhcCCCc-EEEEEcCCCEEEEEeeCCHHHHHHHHHHhCCeEEEee
Confidence            468999999999999999999999998 6999999999999999999999999999999999874

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=2.5e-16  Score=97.82  Aligned_cols=66  Identities=24%  Similarity=0.477  Sum_probs=62.5

Q ss_pred             eEEEEEEcCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceEEcc
Q 031931           27 QTVALKVRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        27 ~~v~l~Vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      .+++|.|+|+|++|+++|+++|++++||.++.+|+..++++|++.+++++|+++|+++||++.++.
T Consensus         6 ~~~~f~V~M~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~~~~~~i~~~I~~~G~~A~l~g   71 (72)
T d1qupa2           6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRG   71 (72)
T ss_dssp             EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEEC
T ss_pred             EEEEEEEccCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEeeCCHHHHHHHHHHhCCCEEEec
Confidence            456899999999999999999999999999999999999999999999999999999999998864

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=8.2e-16  Score=95.41  Aligned_cols=66  Identities=24%  Similarity=0.372  Sum_probs=61.5

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe--cCCHHHHHHHHHhCCCceEEcc
Q 031931           27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG--FVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        27 ~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      +++.|.| ||+|.+|+.+|+++|.+++||.++++|+..++++|..  .++.++|.++|+++||.++++.
T Consensus         2 k~v~l~V~GM~C~~C~~~Ie~~l~~~~gV~~v~V~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~a~~~~   70 (72)
T d2ggpb1           2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR   70 (72)
T ss_dssp             EEEEEECTTCCSSTTTHHHHHHHTTSTTEEEEEECTTTCEEEEEECSSCCHHHHHHHHHHTTCCCEEEE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCHHHHHHHHHHhCCCeEEcc
Confidence            5688999 9999999999999999999999999999999999983  4789999999999999998875

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

Probab=99.61  E-value=3.2e-16  Score=95.19  Aligned_cols=62  Identities=27%  Similarity=0.496  Sum_probs=59.0

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCCceE
Q 031931           28 TVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEPKKVLAAAKATKKKVE   89 (150)
Q Consensus        28 ~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~   89 (150)
                      +++|+| ||+|.+|+.+|+++|++++||.++++|+.+++++|.+.+++++|.++|.++||+++
T Consensus         2 t~~l~V~gM~C~~C~~~Ie~~l~~~~gv~~v~v~~~~~~v~v~~~~~~~~i~~~i~~~GY~ve   64 (64)
T d1sb6a_           2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE   64 (64)
T ss_dssp             EEEEECTTTTSSSCTHHHHHHHHHHCTTCEEEEETTTTEEEEESSSCHHHHHHHHHHHCCCCC
T ss_pred             eEEEEECCccchhHHHHHHHHHhcCCCeeEEEccCCCCEEEEccCCCHHHHHHHHHHcCCCCC
Confidence            368999 99999999999999999999999999999999999999999999999999999864

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

Probab=99.61  E-value=3.3e-15  Score=91.87  Aligned_cols=63  Identities=27%  Similarity=0.438  Sum_probs=59.0

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCce
Q 031931           26 MQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKV   88 (150)
Q Consensus        26 ~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~   88 (150)
                      |++.+|+| ||+|.+|+.+|+++|++++||.++++|+..++++|..   .++.++|.+.|+++||++
T Consensus         1 M~~~tl~V~Gm~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~~   67 (69)
T d2qifa1           1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV   67 (69)
T ss_dssp             CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred             CcEEEEEECCccCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHHhCCcc
Confidence            67889999 9999999999999999999999999999999999984   378999999999999986

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

Probab=99.59  E-value=3.7e-15  Score=92.37  Aligned_cols=65  Identities=29%  Similarity=0.405  Sum_probs=60.7

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCceEEc
Q 031931           27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        27 ~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~   91 (150)
                      +++.|+| ||+|.+|+.+|+++|.+++||.++++|+..+++.|+.   .++.++|.+.|+++||+++++
T Consensus         3 qt~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~a~v~   71 (72)
T d1osda_           3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVK   71 (72)
T ss_dssp             EEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEEC
T ss_pred             eEEEEEECCcccHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhcCCCeEeC
Confidence            6789999 9999999999999999999999999999999999983   378999999999999999865

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

Probab=99.59  E-value=4.1e-15  Score=91.19  Aligned_cols=62  Identities=24%  Similarity=0.448  Sum_probs=57.9

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCceEEc
Q 031931           30 ALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        30 ~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~   91 (150)
                      +|+| ||+|.+|+.+|+++|++++||.++++|+..++++|+.   .++.++|.++|+++||+++++
T Consensus         3 el~V~GM~C~~C~~~Ie~~l~~~~GV~~v~V~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a~vi   68 (68)
T d1cpza_           3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEVI   68 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEEC
T ss_pred             EEEECCeEcHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCcEEC
Confidence            5899 9999999999999999999999999999999999983   378999999999999998864

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.3e-15  Score=92.89  Aligned_cols=70  Identities=20%  Similarity=0.393  Sum_probs=64.7

Q ss_pred             ccCceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCceEEcc
Q 031931           23 KKQMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        23 ~~~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      ...++++.|.| ||+|.+|+.+|+++|++++||.++++|+..++++|+.   .++.++|.+.|+++||++.+..
T Consensus         4 ~~~~~~~~l~V~gm~C~~C~~~ie~~l~~~~gv~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~GY~~~~~~   77 (79)
T d1kvja_           4 SMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN   77 (79)
T ss_dssp             STTCEEEEEEEESCCSTHHHHHHHHHHHTTTTCSEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECS
T ss_pred             CCCceEEEEEECCeecHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHhcCCCcEeCC
Confidence            45688999999 9999999999999999999999999999999999984   3799999999999999998765

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.7e-15  Score=91.15  Aligned_cols=65  Identities=25%  Similarity=0.451  Sum_probs=59.9

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCceEEc
Q 031931           27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        27 ~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~   91 (150)
                      ++..|+| ||+|.+|+.+|+++|.+++||.++++|+..++++|..   .++.++|.+.|+++||++.+.
T Consensus         3 ~~~~l~V~GM~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a~l~   71 (72)
T d2aw0a_           3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS   71 (72)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSEEEEC
T ss_pred             EEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCcEeC
Confidence            5678999 9999999999999999999999999999999999984   378999999999999998763

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=1.1e-14  Score=90.07  Aligned_cols=64  Identities=20%  Similarity=0.361  Sum_probs=59.1

Q ss_pred             CceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCce
Q 031931           25 QMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKV   88 (150)
Q Consensus        25 ~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~   88 (150)
                      +.++++|+| ||+|.+|+.+|+++|.+++||.++++|+..++++|+.   ..+.++|.++|+++||++
T Consensus         4 ~~~~~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~v   71 (72)
T d1p6ta1           4 EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV   71 (72)
T ss_dssp             CCEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred             CceEEEEEECCeecHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHHhCCcc
Confidence            456789999 9999999999999999999999999999999999983   478999999999999975

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.1e-14  Score=91.45  Aligned_cols=68  Identities=18%  Similarity=0.357  Sum_probs=62.6

Q ss_pred             CceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCceEEcc
Q 031931           25 QMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        25 ~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      +..++.|+| ||+|.+|+.+|+++|.+++||.++++|+..++++|..   .++.+.|.+.|+++||++.+..
T Consensus         7 ~~~~v~l~V~GMtC~~C~~~Ie~~l~~~~GV~~v~vn~~~~~v~v~~~~~~~~~~~i~~~I~~~Gy~a~~~~   78 (84)
T d1q8la_           7 GEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKK   78 (84)
T ss_dssp             SCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSC
T ss_pred             CCEEEEEEECCeEcHHHHHHHHHHHhcCCCceEEEEECCCCEEceeecccccCHHHHHHHHHHhCCccEEcC
Confidence            456788999 9999999999999999999999999999999999983   3789999999999999988775

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.51  E-value=3.4e-14  Score=89.46  Aligned_cols=67  Identities=18%  Similarity=0.313  Sum_probs=61.7

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCCceEEccC
Q 031931           27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG---FVEPKKVLAAAKATKKKVEIWPY   93 (150)
Q Consensus        27 ~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~~~   93 (150)
                      .+++|.| ||+|.+|+.+|+++|..++||.++++|+..++++|+.   .++.++|.++|+++||++.+...
T Consensus         2 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~   72 (79)
T d1p6ta2           2 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE   72 (79)
T ss_dssp             EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCS
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCCCHHHHHHHHHHHCCceEECCc
Confidence            4678999 9999999999999999999999999999999999984   37899999999999999988654

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=3.1e-14  Score=88.36  Aligned_cols=65  Identities=25%  Similarity=0.325  Sum_probs=58.4

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec-CCHHHHHHHHHhCCCceEEc
Q 031931           27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGF-VEPKKVLAAAKATKKKVEIW   91 (150)
Q Consensus        27 ~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~-~~~~~i~~~i~~~G~~~~~~   91 (150)
                      ++++|.| ||+|++|+.+|+++|.+++||.++++|+..++++|..+ ...++|.+.|.++||.+...
T Consensus         3 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~GY~v~~~   69 (73)
T d1mwza_           3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRDE   69 (73)
T ss_dssp             CCEEEECTTCCSHHHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCCCCBC
T ss_pred             CEEEEEECCcCCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCHHHHHHHHHHcCCcccCC
Confidence            4578999 99999999999999999999999999999999999854 45789999999999986543

>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein AF1549
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.35  E-value=1.6  Score=26.26  Aligned_cols=67  Identities=10%  Similarity=0.161  Sum_probs=47.8

Q ss_pred             CceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEe-----cCCCEE--EEEec-CCHHHHHHHHHhCCCceEEcc
Q 031931           25 QMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVD-----LKQQKV--TVTGF-VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        25 ~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd-----~~~~~v--~V~~~-~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      ..+++.|.| --+-+.-. .+-+.|.+++||..+++.     .....+  +|+|. .+-+++.+.|++.|-.++-..
T Consensus         3 ~irRlVLDVlKPh~p~~~-~~A~~l~~~~gV~~VnitV~EiD~~t~~i~ItiEG~~idyd~i~~~IE~~Gg~IHSID   78 (91)
T d3bpda1           3 GLRRLVLDVLKPHEPKTI-VFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSVD   78 (91)
T ss_dssp             SEEEEEEEEEEESCSCHH-HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEEEEE
T ss_pred             ceeEEEEEeecCCCCCHH-HHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHHHcCCeEEEEh
Confidence            356778888 55555444 477889999999988753     344444  44465 899999999999997766543

>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein MTH889
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.46  E-value=1.9  Score=26.04  Aligned_cols=67  Identities=12%  Similarity=0.246  Sum_probs=49.0

Q ss_pred             CceEEEEEE-cCcChhHHHHHHHHHhCCCCceEEEE-----ecCCCEEE--EEec-CCHHHHHHHHHhCCCceEEcc
Q 031931           25 QMQTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDV-----DLKQQKVT--VTGF-VEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        25 ~~~~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~v-----d~~~~~v~--V~~~-~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      ..+++.|.| --+-+ -.-.+-+.|.+++||..+++     |.....+.  |+|. ++-++|.+.|++.|-.++-+.
T Consensus         3 ~iRRlVLDVlKPh~P-~i~e~A~~l~~~~gV~~VnitV~EiD~et~~i~itiEG~~idyd~i~~~IE~~Gg~IHSID   78 (93)
T d2raqa1           3 GLIRIVLDILKPHEP-IIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSVD   78 (93)
T ss_dssp             SEEEEEEEEECCSCS-CHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEEE
T ss_pred             ceEEEEEEeecCCCC-CHHHHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHHHcCCeEEEEe
Confidence            456788888 55555 45677788999999988775     44455544  4465 899999999999998766543

>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: SirA
species: Escherichia coli [TaxId: 562]

Probab=87.42  E-value=0.82  Score=26.67  Aligned_cols=56  Identities=4%  Similarity=0.088  Sum_probs=41.7

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe--cCCHHHHHHHHHhCCCceEEcc
Q 031931           28 TVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG--FVEPKKVLAAAKATKKKVEIWP   92 (150)
Q Consensus        28 ~v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~~~G~~~~~~~   92 (150)
                      ..+|.+ |+.|+...-+++++|.+++.         .+.+.|..  ......|...++..|+.+..+.
T Consensus         9 ~~~lD~~G~~CP~P~l~~k~al~~~~~---------G~~l~v~~dd~~a~~di~~~~~~~g~~~~~~~   67 (81)
T d1dcja_           9 DHTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPGFCTFMEHELVAKE   67 (81)
T ss_dssp             SEEECCTTCCTTHHHHHHHHHHHHCCT---------TCCEEEEECSTTHHHHHHHHHHHTTCEEEEEE
T ss_pred             CeEEECCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEeCCCcHHHHHHHHHHHcCCEEEEEE
Confidence            456888 99999999999999998754         23344432  2456778888899999876554

>d1jdqa_ d.68.3.3 (A:) Hypothetical protein TM0983 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: Hypothetical protein TM0983
species: Thermotoga maritima [TaxId: 2336]

Probab=86.83  E-value=1.2  Score=27.03  Aligned_cols=53  Identities=17%  Similarity=0.083  Sum_probs=40.2

Q ss_pred             EEEEE-cCcChhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe--cCCHHHHHHHHHhCCCceEE
Q 031931           29 VALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG--FVEPKKVLAAAKATKKKVEI   90 (150)
Q Consensus        29 v~l~V-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~~~G~~~~~   90 (150)
                      .+|.+ |+.|+...-+++++|.+++.         .+.+.|..  ....+.|...+.+.|+.+.-
T Consensus        27 ~~LD~rG~~CP~Pll~~kkal~~l~~---------Ge~L~V~~dd~~a~~dI~~~~~~~g~~i~~   82 (98)
T d1jdqa_          27 KTLDVRGEVCPVPDVETKRALQNMKP---------GEILEVWIDYPMSKERIPETVKKLGHEVLE   82 (98)
T ss_dssp             EEEECSSCCSSHHHHHHHHHHHTCCT---------TCEEEEEESSCTHHHHHHHHHHHSSCCEEE
T ss_pred             eeEECCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCcchHHHHHHHHHHcCCEEEE
Confidence            46899 99999999999999998854         23344442  24567888888999998743