Citrus Sinensis ID: 031935

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MESGYKFQPSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVPVKTDWLMHEYHVKDDPHYEAVLKCTSLLPIT
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHccccccccccEEEccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccEEEEEEcEEEcccccccccccccccEEEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHccccccccEHHHHHHHccccccccHHHccccccccEEEEEccccccccccccccHHcccccEEEccccccEEccccEEEEEEEEEEEcccccccccccccEEEEEEEcccccccccEEEEEEEEccc
Coil and Loop (DISEMBL)
mesgykfqpsDELILRLLKEkrlnphfsqhhpikdidhicslepwdlptesktesedqvfyffyeprykyrnsnrvdrrteagqwkitsedshieagngltgtKKFLTFycrgpdskvpvktdwlmheyhvkddphyeAVLKCTSLLPIT
Flexible Loop (DISEMBL)
mesgykfqpsdELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFfyeprykyrnsnrvdrrteagqwkitsedshieagngltGTKKFLTFYCRGPDSKVPVKTDWLMHEYhvkddphyeaVLKCTSLLPIT
Low Complexity Region (SEG)
MESGYKFQPSDelilrllkekrlNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVPVKTDWLMHEYHVKDDPHYEAVLKCTSLLPIT
Disordered region (IsUnstruct)
************LILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLP********DQVFYFFYEPRYKYRNSNRVD****AGQWKITS*DSHIEAGNGLTGTKKFLTFYCRGPDSKVPVKTDWLMHEYHVKDDPHYEAVLKCTSLL***
Disordered Region (DISOPRED)
MESGYKFQPSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVPVKTDWLMHEYHVKDDP*YEAVLKCTSLLP**
Disordered Region (DISEMBL)
********PSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVPVKTDWLMHEYHVKDDPHYEAVLKCTSLLPIT
Disordered Region (DISPRO)
MESGYKFQPSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVPVKTDWLMHEYHVKDDPHYEAVLKCTSLLPI*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESGYKFQPSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVPVKTDWLMHEYHVKDDPHYEAVLKCTSLLPIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q84K00	567	NAC domain-containing pro	no	no	0.84	0.222	0.398	5e-17
O81913	359	NAC domain-containing pro	no	no	0.82	0.342	0.378	1e-16
O81914	362	NAC domain-containing pro	no	no	0.82	0.339	0.363	7e-16
Q9FWX2	395	NAC domain-containing pro	no	no	0.906	0.344	0.363	2e-15
Q7GCL7	489	NAC domain-containing pro	no	no	0.82	0.251	0.384	2e-15
Q9FLJ2	336	NAC domain-containing pro	no	no	0.813	0.363	0.404	3e-15
Q9ZVH0	418	Protein FEZ OS=Arabidopsi	no	no	0.766	0.275	0.402	8e-15
Q5CD17	396	NAC domain-containing pro	no	no	0.84	0.318	0.364	9e-15
Q94F58	340	NAC domain-containing pro	no	no	0.893	0.394	0.352	1e-14
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.84	0.369	0.371	1e-14

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 76/133 (57%), Gaps = 7/133 (5%)

Query: 4   GYKFQPSDELILRL-LKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           G++F P+DE ++R  LK K  N  F +   I   D I   EPWDLP +SK +S D  +YF
Sbjct: 12  GFRFHPTDEELVRYYLKRKVCNKPF-KFDAISVTD-IYKSEPWDLPDKSKLKSRDLEWYF 69

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFY-CRGPDSKVPVK 121
           F     KY N ++ +R TE G WK T +D  I  G+ + G KK L ++  R P  +   +
Sbjct: 70  FSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVYHKGRAPRGE---R 126

Query: 122 TDWLMHEYHVKDD 134
           T+W+MHEY + D+
Sbjct: 127 TNWVMHEYRLSDE 139

Arabidopsis thaliana (taxid: 3702)

>sp|O81913|NAC4_ARATH NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 9/132 (6%)

Query: 4   GYKFQPSDELIL-RLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           G++F+P+DE I+   L+ K L+   S    +     ICS EPWDLP++S  +S D V+YF
Sbjct: 6   GFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRDGVWYF 65

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNG---LTGTKKFLTFYCRGPDSKVP 119
           F     KY   ++  RRT +G WK T +   +    G     G K+ L F  R       
Sbjct: 66  FSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNRDGS---- 121

Query: 120 VKTDWLMHEYHV 131
            KTDW+MHEYH 
Sbjct: 122 -KTDWVMHEYHA 132

Arabidopsis thaliana (taxid: 3702)

>sp|O81914|NAC5_ARATH NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 9/132 (6%)

Query: 4   GYKFQPSDELILRL-LKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           G++F+P+D  I+ + L+ K L  + S    +     ICS +PWDLP+ S+ ++ DQV+YF
Sbjct: 6   GFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRDQVWYF 65

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNG---LTGTKKFLTFYCRGPDSKVP 119
           F     KY   +R  R+T++G WK T     I    G     G K+ L F   G      
Sbjct: 66  FGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVFKNHGGS---- 121

Query: 120 VKTDWLMHEYHV 131
            K+DW MHEYH 
Sbjct: 122 -KSDWAMHEYHA 132

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 76/146 (52%), Gaps = 10/146 (6%)

Query: 4   GYKFQPSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQV-FYF 62
           G++F P+DE ++     K++     +   IKDID +  +EPWDL    K   E+Q  +YF
Sbjct: 10  GFRFHPTDEELVDYYLRKKVASKRIEIDFIKDID-LYKIEPWDLQELCKIGHEEQSDWYF 68

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFY-CRGPDSKVPVK 121
           F     KY    R +R T+AG WK T  D  I   + L G +K L FY  R P+ +   K
Sbjct: 69  FSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQ---K 125

Query: 122 TDWLMHEYHVKDD----PHYEAVLKC 143
           +DW+MHEY ++ D    P  E  + C
Sbjct: 126 SDWIMHEYRLETDENGTPQEEGWVVC 151

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7GCL7|NAC74_ORYSJ NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 74/130 (56%), Gaps = 7/130 (5%)

Query: 4   GYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           G+ F P D ELI   LK K+++    ++  I ++D I   EPWDLP +    ++D  ++F
Sbjct: 12  GFGFHPKDTELISHYLK-KKIHGQKIEYEIIPEVD-IYKHEPWDLPAKCDVPTQDNKWHF 69

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFY-CRGPDSKVPVK 121
           F     KY N +R +R T AG WK T +D  I+ G    GTKK L F+  R P  +   +
Sbjct: 70  FAARDRKYPNGSRSNRATVAGYWKSTGKDRAIKMGKQTIGTKKTLVFHEGRPPTGR---R 126

Query: 122 TDWLMHEYHV 131
           T+W+MHEY++
Sbjct: 127 TEWIMHEYYI 136

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 9/131 (6%)

Query: 4   GYKFQPSDE-LILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           G++F P+DE LI   L +K L+  FS    I ++D +   EPW+LP  +K   ++  +YF
Sbjct: 19  GFRFHPTDEELITHYLHKKVLDTSFSAK-AIGEVD-LNKSEPWELPWMAKMGEKE--WYF 74

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFY-CRGPDSKVPVK 121
           F     KY    R +R TEAG WK T +D  I  G  L G KK L FY  R P  +   K
Sbjct: 75  FCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGQ---K 131

Query: 122 TDWLMHEYHVK 132
           T+W+MHEY ++
Sbjct: 132 TNWVMHEYRLE 142

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVH0|FEZ_ARATH Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1

 Score = 79.3 bits (194), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 79/134 (58%), Gaps = 19/134 (14%)

Query: 4   GYKFQPSDELILRLLKEKRLNPHFSQHHP-----IKDIDHICSLEPWDLPTESKTESEDQ 58
           G++F P+DE ++    ++++     QH+P     I+ +D I   +PWDLP  + T  ++ 
Sbjct: 19  GFRFHPTDEELVSFYLKRKV-----QHNPLSIELIRQLD-IYKYDPWDLPKFAMTGEKE- 71

Query: 59  VFYFFYEPR-YKYRNSNRVDRRTEAGQWKITSEDSHIEA--GNGLTGTKKFLTFYCRGPD 115
             ++FY PR  KYRNS+R +R T AG WK T  D  I +  GN   G KK L FY +G  
Sbjct: 72  --WYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLVFY-KGRA 128

Query: 116 SKVPVKTDWLMHEY 129
           +K  VKTDW+MHE+
Sbjct: 129 AKG-VKTDWMMHEF 141

Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 25/151 (16%)

Query: 4   GYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           G++F P+D E+IL  L +K LNP F+   PI ++D +   EPWDLP+++K   ++  +YF
Sbjct: 22  GFRFHPTDAEVILSYLLQKLLNPSFTSL-PIGEVD-LNKCEPWDLPSKAKMGEKE--WYF 77

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHI----EAGNG------------LTGTKKF 106
           F     KY    R +R T+ G WK T +D  I     A N             L G KK 
Sbjct: 78  FSHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKKT 137

Query: 107 LTFYC-RGPDSKVPVKTDWLMHEYHVKDDPH 136
           L FY  R P      KT+W+MHE+ +  + H
Sbjct: 138 LVFYMGRAPKG---TKTNWVMHEFRLHANLH 165

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94F58|NAC89_ARATH NAC domain-containing protein 89 OS=Arabidopsis thaliana GN=NAC089 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 84/142 (59%), Gaps = 8/142 (5%)

Query: 4   GYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           G+KF P+D ELI   LK ++++        I D++ I + EPWDLP +S  +S+ + F+F
Sbjct: 24  GFKFSPTDVELISYYLK-RKMDGLERSVEVIPDLE-IYNFEPWDLPDKSIVKSDSEWFFF 81

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYC-RGPDSKVPVK 121
               + KY + ++  R T+ G WK T ++  +++G+ + GTK+ L F+  R P  +   +
Sbjct: 82  CARGK-KYPHGSQNRRATKMGYWKATGKERDVKSGSEVIGTKRTLVFHIGRAPKGE---R 137

Query: 122 TDWLMHEYHVKDDPHYEAVLKC 143
           TDW+MHEY VK     +A++ C
Sbjct: 138 TDWIMHEYCVKGVSLDDAMVVC 159

Transcription factor involved in plant cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 6/132 (4%)

Query: 4   GYKFQPSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQV-FYF 62
           G++F P+DE +L    +K+++    +   I+++D +  LEPWDL    K  S  Q  +YF
Sbjct: 12  GFRFHPTDEELLHYYLKKKISYQKFEMEVIREVD-LNKLEPWDLQERCKIGSTPQNEWYF 70

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFY-CRGPDSKVPVK 121
           F     KY   +R +R T AG WK T  D  I       G +K L FY  R P  +   K
Sbjct: 71  FSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQ---K 127

Query: 122 TDWLMHEYHVKD 133
           TDW+MHEY ++D
Sbjct: 128 TDWIMHEYRLED 139

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
224118488	316	NAC domain protein, IPR003441 [Populus t	0.906	0.430	0.374	2e-18
356516174	598	PREDICTED: uncharacterized protein LOC10	0.813	0.204	0.377	9e-18
255560596	597	transcription factor, putative [Ricinus	0.846	0.212	0.371	1e-17
21358787	585	nam-like protein 1 [Petunia x hybrida]	0.84	0.215	0.393	1e-17
224134993	381	NAC domain protein, IPR003441 [Populus t	0.846	0.333	0.386	1e-17
449435712	196	PREDICTED: NAC transcription factor ONAC	0.853	0.653	0.372	2e-17
358346559	400	NAC domain protein [Medicago truncatula]	0.813	0.305	0.412	3e-17
449485756	196	PREDICTED: NAC transcription factor ONAC	0.853	0.653	0.372	3e-17
224145744	165	NAC domain protein, IPR003441 [Populus t	0.893	0.812	0.4	4e-17
296089037	335	unnamed protein product [Vitis vinifera]	0.9	0.402	0.417	4e-17

>gi|224118488|ref|XP_002317831.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222858504|gb|EEE96051.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 82/147 (55%), Gaps = 11/147 (7%)

Query: 4   GYKFQPSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
           G++F+PSDE ++      ++N    +   I++ID +C  EPWDLP  S  E++D  ++FF
Sbjct: 14  GFRFRPSDEELVNYYLRHKINGKDDKVRVIREID-VCKWEPWDLPGLSIIENKDPEWFFF 72

Query: 64  YEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYC-RGPDSKVPVKT 122
                KY N +R +R T AG WK T +D  I++GN L G KK L FY  R P  K   +T
Sbjct: 73  CPLDRKYPNGSRQNRATNAGYWKATGKDRKIKSGNRLIGMKKTLVFYTGRAPKGK---RT 129

Query: 123 DWLMHEYHVKDD------PHYEAVLKC 143
           +W++HEY   ++      P   A + C
Sbjct: 130 NWVVHEYRATEEELDGTKPGQSAFVLC 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516174|ref|XP_003526771.1| PREDICTED: uncharacterized protein LOC100808469 [Glycine max]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 5/127 (3%)

Query: 4   GYKFQPSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
           G++F+P+DE ++     +++N +  Q   I++ID +C  EPWD+P  S  +++D  ++FF
Sbjct: 25  GFRFRPTDEELVNYYLRQKINGNGRQVWVIREID-VCKWEPWDMPGLSVVQTKDPEWFFF 83

Query: 64  YEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYC-RGPDSKVPVKT 122
                KY N +R++R T  G WK T +D  I++G  L G KK L FY  R P      +T
Sbjct: 84  CPQDRKYPNGHRLNRATNNGYWKATGKDRRIKSGKDLIGMKKTLVFYTGRAPKGN---RT 140

Query: 123 DWLMHEY 129
           +W+MHEY
Sbjct: 141 NWVMHEY 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560596|ref|XP_002521312.1| transcription factor, putative [Ricinus communis] gi|223539497|gb|EEF41086.1| transcription factor, putative [Ricinus communis]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 5/132 (3%)

Query: 4   GYKFQPSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
           G++F+P+DE ++      ++N +      I+++D +C  EPWDLP  S  ++ DQ ++FF
Sbjct: 12  GFRFRPTDEELVNFYLRLKINGNDKDVRVIRELD-VCKWEPWDLPDMSIIKTNDQEWFFF 70

Query: 64  YEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYC-RGPDSKVPVKT 122
                KY N +R++R T  G WK T +D  I++GN L G KK L FY  R P      +T
Sbjct: 71  CPLDRKYPNGHRLNRATSKGYWKATGKDRKIKSGNTLIGMKKTLVFYTGRAPRG---TRT 127

Query: 123 DWLMHEYHVKDD 134
            W++HEY   +D
Sbjct: 128 HWVIHEYRATED 139

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21358787|gb|AAM47025.1| nam-like protein 1 [Petunia x hybrida]

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/132 (39%), Positives = 76/132 (57%), Gaps = 6/132 (4%)

Query: 4   GYKFQPSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
           GY+F+P+DE ++      ++N   ++   I+++D IC LEPWDLP  S  ES D  ++FF
Sbjct: 30  GYRFRPTDEELVNHYLRLKINGADNEVSVIREVD-ICKLEPWDLPIWSVVESNDNEWFFF 88

Query: 64  YEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLT-GTKKFLTFYC-RGPDSKVPVK 121
                KY+N  R++R TE G WK T +D +I    G   G KK L +Y  R P+ K   +
Sbjct: 89  CPKDRKYQNGQRLNRATERGYWKATGKDRNIVTKKGAKIGMKKTLVYYIGRAPEGK---R 145

Query: 122 TDWLMHEYHVKD 133
           T W++HEY   D
Sbjct: 146 THWVIHEYRATD 157

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134993|ref|XP_002321956.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222868952|gb|EEF06083.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 5/132 (3%)

Query: 4   GYKFQPSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
           G++F+PSD+ ++      ++N        I++ID +C  EPWDLP  S  +++D  ++FF
Sbjct: 14  GFRFRPSDKELVDYYLRLKINGDDDGVKVIREID-VCKWEPWDLPDLSIIKNKDPEWFFF 72

Query: 64  YEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYC-RGPDSKVPVKT 122
                KY N +R +R T AG WK T  D  I++GN L G KK L FY  R P  K   +T
Sbjct: 73  CPLDRKYPNGSRQNRATNAGYWKATGNDRKIKSGNNLIGMKKTLVFYTGRAPKGK---RT 129

Query: 123 DWLMHEYHVKDD 134
           +W+MHEY   ++
Sbjct: 130 NWVMHEYRATEE 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435712|ref|XP_004135638.1| PREDICTED: NAC transcription factor ONAC010-like [Cucumis sativus]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 9/137 (6%)

Query: 4   GYKFQPSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
           G++F P+DE +     + ++    S    I+ +D IC+ EPW+LP+ S  ++ D  ++FF
Sbjct: 16  GFRFHPTDEELFNHYLKNKIVGRESLVQYIRQVD-ICNFEPWELPSLSNDQTGDHQWFFF 74

Query: 64  YEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNG--LTGTKKFLTFYCRGPDSKVP-- 119
               +KY N  R +R T+ G WK T +D  I A     L GTKK L FY      +VP  
Sbjct: 75  SAQDFKYSNGRRSNRATKTGYWKSTGKDRQIMARGTKVLIGTKKTLVFY----SGRVPNG 130

Query: 120 VKTDWLMHEYHVKDDPH 136
           +KT+W++HEYH+  DP+
Sbjct: 131 IKTNWVIHEYHLHPDPN 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346559|ref|XP_003637334.1| NAC domain protein [Medicago truncatula] gi|358346862|ref|XP_003637483.1| NAC domain protein [Medicago truncatula] gi|355503269|gb|AES84472.1| NAC domain protein [Medicago truncatula] gi|355503418|gb|AES84621.1| NAC domain protein [Medicago truncatula]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 9/131 (6%)

Query: 4   GYKFQPSDE-LILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           G++F+P+DE L+   LK+K L      ++ I ++D +C  EPWDLP  S  +S D  ++F
Sbjct: 14  GFRFRPTDEELVNHYLKKKLLGNDSIVNNVIAEVD-VCKFEPWDLPACSLIKSNDPEWFF 72

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIE--AGNGLTGTKKFLTFYCRGPDSKVP- 119
           F    YKY NS R +RRT+ G WK T  D  I+    + + G KK L FY    +  VP 
Sbjct: 73  FCPRDYKYANSKRFNRRTQCGYWKATGLDRKIKVRGTDNVIGIKKTLVFY----NGCVPG 128

Query: 120 VKTDWLMHEYH 130
           VK++W++HEYH
Sbjct: 129 VKSNWVIHEYH 139

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485756|ref|XP_004157266.1| PREDICTED: NAC transcription factor ONAC010-like [Cucumis sativus]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 9/137 (6%)

Query: 4   GYKFQPSDELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
           G++F P+DE +     + ++    S    I+ +D IC+ EPW+LP+ S  ++ D  ++FF
Sbjct: 16  GFRFHPTDEELFNHYLKNKIVGRESLVQYIRQVD-ICNFEPWELPSLSNDQTGDHQWFFF 74

Query: 64  YEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEA--GNGLTGTKKFLTFYCRGPDSKVP-- 119
               +KY N  R +R T+ G WK T +D  I A     L GTKK L FY      +VP  
Sbjct: 75  SAQDFKYSNGRRSNRATKTGYWKSTGKDRQIMARVTKVLIGTKKTLVFY----SGRVPNG 130

Query: 120 VKTDWLMHEYHVKDDPH 136
           +KT+W++HEYH+  DP+
Sbjct: 131 IKTNWVIHEYHLHPDPN 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145744|ref|XP_002336258.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222833042|gb|EEE71519.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 80/140 (57%), Gaps = 6/140 (4%)

Query: 4   GYKFQPSDELILRLLKEKRLNPHFSQHHP-IKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           GY+F P++E I+      +LN   S     I +IDH+   +PWDLP  +  +S D+V+YF
Sbjct: 5   GYRFHPTEEEIIDHYLSCKLNGLDSLVDAYIGEIDHLYQWDPWDLPDFAVIQSNDRVWYF 64

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHI--EAGNGLTGTKKFLTFYCRGPDSKVPV 120
           F    YK+ NS RV+R T+ G WK+T +  +I     N + GTKK L F  + PDSK   
Sbjct: 65  FCRHDYKFPNSKRVNRTTKNGNWKLTGKVRNITRRGTNEVIGTKKNLVFLHKCPDSK--- 121

Query: 121 KTDWLMHEYHVKDDPHYEAV 140
           KT W++HE+  K  P  E +
Sbjct: 122 KTRWVIHEFQAKTPPPDEGL 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089037|emb|CBI38740.3| unnamed protein product [Vitis vinifera]

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 83/146 (56%), Gaps = 11/146 (7%)

Query: 4   GYKFQPSDE-LILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           G++F P+DE L+   LK K L  + S    I ++D +C  EPWDLP  S  ++ D  ++F
Sbjct: 9   GFRFHPTDEELVDHYLKLKILGMN-SHVDIIPEVD-VCKWEPWDLPVLSVIQTNDPEWFF 66

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIE--AGNGLTGTKKFLTFY-CRGPDSKVP 119
           F  P YKY    R +R TEAG WK T +D +I+  A   L GTKK L FY  R P S   
Sbjct: 67  FCPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSRATKELLGTKKTLVFYRGRAPQS--- 123

Query: 120 VKTDWLMHEYH--VKDDPHYEAVLKC 143
           V+T+W+MHEY   +   P  +A + C
Sbjct: 124 VRTNWVMHEYRAAIASLPANKAYVLC 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2128013	534	NTL9 "NAC transcription factor	0.866	0.243	0.391	2.7e-18
TAIR|locus:2039600	335	NTL8 "NTM1-like 8" [Arabidopsi	0.893	0.4	0.333	1.2e-17
TAIR|locus:2009729	631	NAC028 "NAC domain containing	0.853	0.202	0.362	2.2e-17
TAIR|locus:2164895	285	NAC6 "NAC domain containing pr	0.82	0.431	0.384	1.1e-16
TAIR|locus:2153899	451	TIP "TCV-interacting protein"	0.84	0.279	0.356	2e-16
TAIR|locus:2037920	652	NAC014 "NAC 014" [Arabidopsis	0.84	0.193	0.351	2.8e-16
TAIR|locus:2097720	479	NAC045 "NAC domain containing	0.826	0.258	0.360	3.1e-16
TAIR|locus:2020123	301	NAC020 "NAC domain containing	0.846	0.421	0.335	3.7e-16
TAIR|locus:2167155	476	NAC086 "NAC domain containing	0.826	0.260	0.353	3.9e-16
TAIR|locus:2087037	318	NAC3 "NAC domain containing pr	0.826	0.389	0.364	6.5e-16

TAIR|locus:2128013 NTL9 "NAC transcription factor-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 2.7e-18, P = 2.7e-18
 Identities = 54/138 (39%), Positives = 75/138 (54%)

Query:     1 MES---GYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESED 57
             MES   G++F+P+D            N   S    I DID +C  EPWDLP  S  +++D
Sbjct:     6 MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDID-VCKWEPWDLPALSVIKTDD 64

Query:    58 QVFYFFYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSK 117
               ++FF     KY N +R +R T++G WK T +D  I++   L G KK L FY RG   K
Sbjct:    65 PEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVFY-RGRAPK 123

Query:   118 VPVKTDWLMHEYH--VKD 133
                +T+W+MHEY   +KD
Sbjct:   124 GE-RTNWIMHEYRPTLKD 140

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

TAIR|locus:2039600 NTL8 "NTM1-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 47/141 (33%), Positives = 78/141 (55%)

Query:     4 GYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
             G++F P+D            +   +    I +++ I   EPWDLP ESK +SE++ FYF 
Sbjct:    17 GFRFSPTDVELISYYLRRKIDGDENSVAVIAEVE-IYKFEPWDLPEESKLKSENEWFYFC 75

Query:    64 YEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYC-RGPDSKVPVKT 122
                R KY + ++  R T+ G WK T ++  +++GN + GTK+ L F+  R P  +   +T
Sbjct:    76 ARGR-KYPHGSQSRRATQLGYWKATGKERSVKSGNQVVGTKRTLVFHIGRAPRGE---RT 131

Query:   123 DWLMHEYHVKDDPHYEAVLKC 143
             +W+MHEY +   P  +A++ C
Sbjct:   132 EWIMHEYCIHGAPQ-DALVVC 151

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2009729 NAC028 "NAC domain containing protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 49/135 (36%), Positives = 74/135 (54%)

Query:     1 MESGYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVF 60
             M  G++F P+D            N    +   I +ID +   EPWDLP +S   S+D + 
Sbjct:     6 MPPGFRFHPTDEELVIYYLKRKINGRTIELEIIPEID-LYKCEPWDLPGKSLLPSKD-LE 63

Query:    61 YFFYEPR-YKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYC-RGPDSKV 118
             +FF+ PR  KY N +R +R T+AG WK T +D  + + + + GTKK L +Y  R P    
Sbjct:    64 WFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVTSHSRMVGTKKTLVYYRGRAPHGS- 122

Query:   119 PVKTDWLMHEYHVKD 133
               +TDW+MHEY +++
Sbjct:   123 --RTDWVMHEYRLEE 135

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2164895 NAC6 "NAC domain containing protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 50/130 (38%), Positives = 69/130 (53%)

Query:     4 GYKFQPSDXXXXXXXXX-XXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
             G++F P+D             N  FS    I ++D +  +EPWDLP ++K   ++  +YF
Sbjct:    23 GFRFHPTDEELITHYLKPKVFNTFFSAT-AIGEVD-LNKIEPWDLPWKAKMGEKE--WYF 78

Query:    63 FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVPVKT 122
             F     KY    R +R TEAG WK T +D  I  G  L G KK L FY +G   K  VKT
Sbjct:    79 FCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFY-KGRAPK-GVKT 136

Query:   123 DWLMHEYHVK 132
             +W+MHEY ++
Sbjct:   137 NWVMHEYRLE 146

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2153899 TIP "TCV-interacting protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 47/132 (35%), Positives = 68/132 (51%)

Query:     4 GYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
             G++F P+D            N H +    I++ID IC  EPWDLP  S  ++ D  + FF
Sbjct:    16 GFRFSPTDEELVRYYLRLKINGHDNDVRVIREID-ICKWEPWDLPDFSVVKTTDSEWLFF 74

Query:    64 YEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNG-LTGTKKFLTFYC-RGPDSKVPVK 121
                  KY + +R++R T AG WK T +D  I++G   + G K+ L FY  R P      +
Sbjct:    75 CPLDRKYPSGSRMNRATVAGYWKATGKDRKIKSGKTKIIGVKRTLVFYTGRAPKG---TR 131

Query:   122 TDWLMHEYHVKD 133
             T W+MHEY   +
Sbjct:   132 TCWIMHEYRATE 143

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0051607 "defense response to virus" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2037920 NAC014 "NAC 014" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.8e-16, P = 2.8e-16
 Identities = 46/131 (35%), Positives = 70/131 (53%)

Query:     4 GYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
             G++F+P+D            N    +   I +ID +C  EPWDLP  S  +++DQ ++FF
Sbjct:    27 GFRFRPTDEELINHYLRLKINGRDLEVRVIPEID-VCKWEPWDLPGLSVIKTDDQEWFFF 85

Query:    64 YEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYC-RGPDSKVPVKT 122
                  KY + +R +R T+ G WK T +D  I++   + G KK L FY  R P  +   +T
Sbjct:    86 CPRDRKYPSGHRSNRATDIGYWKATGKDRTIKSKKMIIGMKKTLVFYRGRAPRGE---RT 142

Query:   123 DWLMHEYHVKD 133
             +W+MHEY   D
Sbjct:   143 NWIMHEYRATD 153

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2097720 NAC045 "NAC domain containing protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 3.1e-16, P = 3.1e-16
 Identities = 48/133 (36%), Positives = 71/133 (53%)

Query:     4 GYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
             G++F P+D            N    +   I ++D +   EPWDLP +S   S+DQ +YFF
Sbjct:     9 GFRFHPTDEELITYYLKRKINGLEIELEVIAEVD-LYKCEPWDLPGKSLLPSKDQEWYFF 67

Query:    64 YEPR-YKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVP--V 120
               PR  KY N +R +R T+ G WK T +D  +   +   GTKK L +Y RG   + P  +
Sbjct:    68 -SPRDRKYPNGSRTNRATKGGYWKATGKDRRVSWRDRAIGTKKTLVYY-RG---RAPHGI 122

Query:   121 KTDWLMHEYHVKD 133
             +T W+MHEY + +
Sbjct:   123 RTGWVMHEYRLDE 135

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2020123 NAC020 "NAC domain containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 45/134 (33%), Positives = 67/134 (50%)

Query:     4 GYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
             G++F P+D            N    +   I ++D +   EPWDLP +S     D  +YF+
Sbjct:     9 GFRFHPTDEELVAYYLDRKVNGQAIELEIIPEVD-LYKCEPWDLPEKSFLPGNDMEWYFY 67

Query:    64 YEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVP--VK 121
                  KY N +R +R T AG WK T +D  +E+     G KK L +Y RG   + P  ++
Sbjct:    68 STRDKKYPNGSRTNRATRAGYWKATGKDRTVESKKMKMGMKKTLVYY-RG---RAPHGLR 123

Query:   122 TDWLMHEYHVKDDP 135
             T+W+MHEY +   P
Sbjct:   124 TNWVMHEYRLTHAP 137

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2167155 NAC086 "NAC domain containing protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 3.9e-16, P = 3.9e-16
 Identities = 47/133 (35%), Positives = 71/133 (53%)

Query:     4 GYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
             G++F P+D            N    +   I ++D +   EPWDLP +S   S+DQ  +FF
Sbjct:     9 GFRFHPTDEELITYYLKRKINGQEIELEIIPEVD-LYKCEPWDLPGKSLIPSKDQE-WFF 66

Query:    64 YEPR-YKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVP--V 120
             + PR  KY N +R +R T+ G WK T +D  +   +   GTKK L +Y RG   + P  +
Sbjct:    67 FSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSWRDRAIGTKKTLVYY-RG---RAPHGI 122

Query:   121 KTDWLMHEYHVKD 133
             +T W+MHEY + +
Sbjct:   123 RTGWVMHEYRLDE 135

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2087037 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 6.5e-16, P = 6.5e-16
 Identities = 47/129 (36%), Positives = 67/129 (51%)

Query:     4 GYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
             G++F P+D               F     I ++D +  +EPWDLP ++K   ++  +YFF
Sbjct:    27 GFRFHPTDEELITHYLRPKVVNSFFSAIAIGEVD-LNKVEPWDLPWKAKLGEKE--WYFF 83

Query:    64 YEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVPVKTD 123
                  KY    R +R T+AG WK T +D  I  G  L G KK L FY +G   K  VKT+
Sbjct:    84 CVRDRKYPTGLRTNRATKAGYWKATGKDKEIFKGKSLVGMKKTLVFY-KGRAPK-GVKTN 141

Query:   124 WLMHEYHVK 132
             W+MHEY ++
Sbjct:   142 WVMHEYRLE 150

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC041 NAC domain protein, IPR003441 (151 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	2e-33

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  114 bits (287), Expect = 2e-33
 Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 6/129 (4%)

Query: 4   GYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           G++F P+D EL++  LK K L         I ++D I   EPWDLP + K +  D+ +YF
Sbjct: 4   GFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVD-IYKFEPWDLP-DGKAKGGDREWYF 61

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNG-LTGTKKFLTFYCRGPDSKVPVK 121
           F     KY N +R +R T +G WK T +D  + +  G + G KK L FY +G   K   K
Sbjct: 62  FSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFY-KGRAPK-GEK 119

Query: 122 TDWLMHEYH 130
           TDW+MHEY 
Sbjct: 120 TDWVMHEYR 128

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=2.4e-47  Score=273.43  Aligned_cols=126  Identities=39%  Similarity=0.751  Sum_probs=92.8

Q ss_pred             CCCCceecCCH-HHHHHHhHHhhcCCCCCCCCCeeecCcccCCCCCCCCCcccCCCCCceEEEEecccccccCCCccccc
Q 031935            1 MESGYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRR   79 (150)
Q Consensus         1 lp~G~rF~PtD-ELi~~yL~~k~~g~~~~~~~~I~~~D~vy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~g~r~~R~   79 (150)
                      |||||||+||| |||.+||++|+.|+++...++|+++| ||++|||+|++..  .+++++||||+++++++.+++|.+|+
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~D-iy~~~P~~L~~~~--~~~~~~~yFF~~~~~~~~~~~r~~R~   77 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVD-IYSAHPWELPAKF--KGGDEEWYFFSPRKKKYPNGGRPNRV   77 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE---GGGS-GGGCHHHS--SS-SSEEEEEEE----------S-EE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecc-cCccChHHhhhhc--cCCCceEEEEEecccccCCccccccc
Confidence            89999999999 99999999999999985558999999 9999999999422  23567999999999999999999999


Q ss_pred             ccCceeEeccCceEEee-CCeEEeeeEEEEEEecC-CCCCCCCcCCeEEEEEEeC
Q 031935           80 TEAGQWKITSEDSHIEA-GNGLTGTKKFLTFYCRG-PDSKVPVKTDWLMHEYHVK  132 (150)
Q Consensus        80 ~~~G~W~~~g~~~~i~~-~g~~iG~kk~l~f~~~~-~~~~~~~kt~W~M~EY~l~  132 (150)
                      +++|+||.+|+.+.|.+ +|.++|+|++|+||.++ ++   +.+|+|+||||+|.
T Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~---~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   78 TGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPN---GKKTGWVMHEYSLE  129 (129)
T ss_dssp             ETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS----EEEEEEEEEEEE-
T ss_pred             ccceEEeecccccccccccceeeeeEEEEEEEeccCCC---CCcCCeEEEEEEeC
Confidence            99999999999999998 78999999999999876 44   78999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		2e-10
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		9e-10
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		9e-10

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 1   MESGYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVF 60
           +  G++F P+D                     I ++D +   +PWDLP  +   + +   
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVD-LYKFDPWDLPERALFGARE--- 70
Query: 61  YFFYEPR-YKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVP 119
           ++F+ PR  KY N +R +R    G WK T  D  +       G KK L FY      K P
Sbjct: 71  WYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYA----GKAP 126
Query: 120 --VKTDWLMHEYHV 131
             VKTDW+MHEY +
Sbjct: 127 RGVKTDWIMHEYRL 140

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 4   GYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
           G++F P+D              +      I +ID +   +PW LP ++    ++   ++F
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLPNKALFGEKE---WYF 75
Query: 64  YEPR-YKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVP--V 120
           + PR  KY N +R +R   +G WK T  D  I       G KK L FY      K P   
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI----GKAPKGT 131
Query: 121 KTDWLMHEYHV 131
           KT+W+MHEY +
Sbjct: 132 KTNWIMHEYRL 142

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 4   GYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
           G++F P+D              +      I +ID +   +PW LP ++    ++   ++F
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLPNKALFGEKE---WYF 78
Query: 64  YEPR-YKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVP--V 120
           + PR  KY N +R +R   +G WK T  D  I       G KK L FY      K P   
Sbjct: 79  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI----GKAPKGT 134
Query: 121 KTDWLMHEYHV 131
           KT+W+MHEY +
Sbjct: 135 KTNWIMHEYRL 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	3e-33
1ut7_A	171	No apical meristem protein; transcription regulati	5e-33

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  114 bits (287), Expect = 3e-33
 Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 9/134 (6%)

Query: 4   GYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           G++F P+D EL+   L  K           I ++D +   +PWDLP  +   + +  +YF
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPI-IAEVD-LYKFDPWDLPERALFGARE--WYF 73

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYC-RGPDSKVPVK 121
           F     KY N +R +R    G WK T  D  +       G KK L FY  + P     VK
Sbjct: 74  FTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG---VK 130

Query: 122 TDWLMHEYHVKDDP 135
           TDW+MHEY + D  
Sbjct: 131 TDWIMHEYRLADAG 144

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  113 bits (285), Expect = 5e-33
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 4   GYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           G++F P+D EL+++ L  K     FS    I +ID +   +PW LP ++     ++ +YF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQ-LIAEID-LYKFDPWVLPNKAL--FGEKEWYF 75

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYC-RGPDSKVPVK 121
           F     KY N +R +R   +G WK T  D  I       G KK L FY  + P      K
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG---TK 132

Query: 122 TDWLMHEYHVKDDPH 136
           T+W+MHEY + +   
Sbjct: 133 TNWIMHEYRLIEPSR 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=7e-57  Score=335.87  Aligned_cols=142  Identities=32%  Similarity=0.628  Sum_probs=126.2

Q ss_pred             CCCCceecCCH-HHHHHHhHHhhcCCCCCCCCCeeecCcccCCCCCCCCCcccCCCCCceEEEEecccccccCCCccccc
Q 031935            1 MESGYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRR   79 (150)
Q Consensus         1 lp~G~rF~PtD-ELi~~yL~~k~~g~~~~~~~~I~~~D~vy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~g~r~~R~   79 (150)
                      |||||||+||| |||.|||++|+.|.++ +.++|+++| ||.+|||+||+.+..  ++.+||||+++.+++++|.|.+|+
T Consensus        15 LPpGfRF~PTDeELV~~YL~~K~~g~~~-~~~~I~evD-vy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~nR~   90 (174)
T 3ulx_A           15 LPPGFRFHPTDDELVEHYLCRKAAGQRL-PVPIIAEVD-LYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPNRA   90 (174)
T ss_dssp             CCTTCCCCCCHHHHHHHTHHHHHHTCCC-SSSCCEECC-GGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSCEE
T ss_pred             CCCcceeCCCHHHHHHHHHHHHhcCCCC-CcCeeeecc-cccCCchhhhhhhcc--CCceEEEEeccccccCCCCCceee
Confidence            89999999999 9999999999999998 789999999 999999999988754  367999999999999999999999


Q ss_pred             ccCceeEeccCceEEeeCCeEEeeeEEEEEEecC-CCCCCCCcCCeEEEEEEeCCCCC-----------CCcEEEEEEee
Q 031935           80 TEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRG-PDSKVPVKTDWLMHEYHVKDDPH-----------YEAVLKCTSLL  147 (150)
Q Consensus        80 ~~~G~W~~~g~~~~i~~~g~~iG~kk~l~f~~~~-~~~~~~~kt~W~M~EY~l~~~~~-----------~~~~VlCki~l  147 (150)
                      +++|+||++|+++.|.++|.+||+||+|+||.++ |+   +.+|+|+||||+|.++..           .+++||||||.
T Consensus        91 t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~---g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~  167 (174)
T 3ulx_A           91 AGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPR---GVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN  167 (174)
T ss_dssp             ETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTS---CEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred             cCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCC---CCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence            9999999999999999889999999999999998 66   889999999999987632           46899999998


Q ss_pred             cC
Q 031935          148 PI  149 (150)
Q Consensus       148 ~~  149 (150)
                      +.
T Consensus       168 K~  169 (174)
T 3ulx_A          168 KK  169 (174)
T ss_dssp             SC
T ss_pred             cC
Confidence            74

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.2e-56  Score=334.23  Aligned_cols=142  Identities=32%  Similarity=0.624  Sum_probs=124.3

Q ss_pred             CCCCceecCCH-HHHHHHhHHhhcCCCCCCCCCeeecCcccCCCCCCCCCcccCCCCCceEEEEecccccccCCCccccc
Q 031935            1 MESGYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRR   79 (150)
Q Consensus         1 lp~G~rF~PtD-ELi~~yL~~k~~g~~~~~~~~I~~~D~vy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~g~r~~R~   79 (150)
                      |||||||+||| |||.|||++|+.|.++ +.++|+++| ||.+|||+||+....  ++++||||+++.+++++|.|.+|+
T Consensus        17 lPpGfRF~PTDeELv~~YL~~K~~g~~~-~~~~I~e~D-iy~~~Pw~Lp~~~~~--g~~ewyFFs~r~~k~~~g~R~~R~   92 (171)
T 1ut7_A           17 LPPGFRFYPTDEELMVQYLCRKAAGYDF-SLQLIAEID-LYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPNRV   92 (171)
T ss_dssp             CCTTEEECCCHHHHHHHTHHHHHTTCCC-SSCCSEECC-GGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CCEE
T ss_pred             CCCcceeCCChHHHHHHHHHHHhcCCCC-CCCeEeecc-cccCChhHhhchhhc--CCccEEEEeccccccCCCCccccc
Confidence            89999999999 9999999999999998 788999999 999999999988643  468999999999999999999999


Q ss_pred             ccCceeEeccCceEEeeCCeEEeeeEEEEEEecC-CCCCCCCcCCeEEEEEEeCCCC------CCCcEEEEEEeecC
Q 031935           80 TEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRG-PDSKVPVKTDWLMHEYHVKDDP------HYEAVLKCTSLLPI  149 (150)
Q Consensus        80 ~~~G~W~~~g~~~~i~~~g~~iG~kk~l~f~~~~-~~~~~~~kt~W~M~EY~l~~~~------~~~~~VlCki~l~~  149 (150)
                      +++|+||++|+++.|.+++.+||+|++|+||.++ ++   +.+|+|+||||+|.++.      ..+++||||||.+.
T Consensus        93 t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~---g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~  166 (171)
T 1ut7_A           93 AGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK---GTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ  166 (171)
T ss_dssp             ETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTS---CEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred             CCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCC---CCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcC
Confidence            9999999999999999989999999999999998 66   88999999999999764      35789999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	3e-27

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 97.8 bits (243), Expect = 3e-27
 Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 4   GYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYF 62
           G++F P+D EL+++ L  K     FS    I +ID +   +PW LP ++    ++  +YF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFS-LQLIAEID-LYKFDPWVLPNKALFGEKE--WYF 75

Query: 63  FYEPRYKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVPVKT 122
           F     KY N +R +R   +G WK T  D  I       G KK L FY          KT
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK--GTKT 133

Query: 123 DWLMHEYHVKDDPH 136
           +W+MHEY + +   
Sbjct: 134 NWIMHEYRLIEPSR 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.3e-54  Score=320.64  Aligned_cols=141  Identities=32%  Similarity=0.631  Sum_probs=122.4

Q ss_pred             CCCCceecCCH-HHHHHHhHHhhcCCCCCCCCCeeecCcccCCCCCCCCCcccCCCCCceEEEEecccccccCCCccccc
Q 031935            1 MESGYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRR   79 (150)
Q Consensus         1 lp~G~rF~PtD-ELi~~yL~~k~~g~~~~~~~~I~~~D~vy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~g~r~~R~   79 (150)
                      |||||||+||| |||.|||++|+.|.++ +.++|+++| ||++|||+||+.+.  .++++||||+++.++++++.|.+|+
T Consensus        17 LPpG~RF~PTDeELv~~YL~~Ki~g~~l-~~~~I~~~D-vy~~~Pw~Lp~~~~--~~~~~wyFft~~~~k~~~g~r~~R~   92 (166)
T d1ut7a_          17 LPPGFRFYPTDEELMVQYLCRKAAGYDF-SLQLIAEID-LYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPNRV   92 (166)
T ss_dssp             CCTTEEECCCHHHHHHHTHHHHHTTCCC-SSCCSEECC-GGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CCEE
T ss_pred             CCCccccCCCcHHHHHHHHHHHHcCCCC-Ccccceecc-CCcCChhhccchhc--cCcceEEEEeeeccccCCCCccccc
Confidence            89999999999 9999999999999998 888999999 99999999998764  3467899999999999999999999


Q ss_pred             ccCceeEeccCceEEeeCCeEEeeeEEEEEEecC-CCCCCCCcCCeEEEEEEeCCCCC------CCcEEEEEEeec
Q 031935           80 TEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRG-PDSKVPVKTDWLMHEYHVKDDPH------YEAVLKCTSLLP  148 (150)
Q Consensus        80 ~~~G~W~~~g~~~~i~~~g~~iG~kk~l~f~~~~-~~~~~~~kt~W~M~EY~l~~~~~------~~~~VlCki~l~  148 (150)
                      +++|+||++|+++.|.++|.+||+|++|+||.++ ++   +.+|+|+||||+|.++..      .+++||||||.+
T Consensus        93 ~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~---~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~K  165 (166)
T d1ut7a_          93 AGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK---GTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK  165 (166)
T ss_dssp             ETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTS---CEEEEEEEEEEEECCCC--------CCEEEEEEEEC
T ss_pred             cCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCC---CCccCeEEEEEecCCcccccCccccCCEEEEEEEec
Confidence            9999999999999999999999999999999998 66   789999999999987643      357899999976