Citrus Sinensis ID: 031943

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMNS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHccccHHHHHHcccccccccccccccccHHHccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHHcccc
Coil and Loop (DISEMBL)
MREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWrqndydngtyhhhfqrddwywkadpsyrqqrtnfrqppresesyslshhysvlgldrlrkapytEAEIKTAFRAKakefhpdqnqgnKEAAEAKFKEVMVSYEAIKQERKDMNS
Flexible Loop (DISEMBL)
mreeyeeemerverirrmqsvfnrernkykksyESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFrqppresesyslshHYSVLGLDRLRKAPYTEAEIKTAFRAKAkefhpdqnqgnkeaAEAKFKEVMVSYEAIKQERKDMNS
Low Complexity Region (SEG)
mreeyeeemerverirrmQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPResesyslshhysvlGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMNS
Disordered region (IsUnstruct)
********************************YESWRQNDYDNGTYHHHFQRDDWYWKAD************************HYSVLGLDRLRKAPYTEA*I**********************************************
Disordered Region (DISOPRED)
**********************************************HHHFQRDDWYWKADP***********************HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIK*E******
Disordered Region (DISEMBL)
************ERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSY*******************SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIK********
Disordered Region (DISPRO)
******EEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQ***********SESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNxxxxxxxxxxxxxxxxxxxxxRKDMNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
A3DF24	386	Chaperone protein DnaJ OS	yes	no	0.38	0.147	0.483	1e-07
Q6L0S6	357	Chaperone protein DnaJ OS	yes	no	0.38	0.159	0.467	5e-07
Q52702	384	Chaperone protein DnaJ OS	yes	no	0.373	0.145	0.508	5e-07
A7HZ38	385	Chaperone protein DnaJ OS	yes	no	0.366	0.142	0.5	1e-06
A9KG87	375	Chaperone protein DnaJ OS	yes	no	0.38	0.152	0.483	1e-06
B6J7U6	375	Chaperone protein DnaJ OS	yes	no	0.38	0.152	0.483	1e-06
B6IZJ1	374	Chaperone protein DnaJ OS	yes	no	0.38	0.152	0.483	1e-06
Q73XZ6	381	Chaperone protein DnaJ 1	N/A	no	0.373	0.146	0.451	1e-06
Q2NVZ0	374	Chaperone protein DnaJ OS	yes	no	0.393	0.157	0.453	5e-06
Q5E3A8	379	Chaperone protein DnaJ OS	yes	no	0.373	0.147	0.475	5e-06

>sp|A3DF24|DNAJ_CLOTH Chaperone protein DnaJ OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaJ PE=3 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y +LG+DR      ++AEIK A+R  AK++HPD N G+K AAEAKFKE+  +YE +   
Sbjct: 7   YYEILGVDR----GASDAEIKKAYRKLAKQYHPDMNPGDK-AAEAKFKEINEAYEVLSDP 61

Query: 145 RK 146
           +K
Sbjct: 62  QK 63

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119)

>sp|Q6L0S6|DNAJ_PICTO Chaperone protein DnaJ OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=dnaJ PE=3 SV=1

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y++LG+DR      ++ +IK AFR  AK++HPD N GNKE AE KFKE+  +YE +   
Sbjct: 5   YYAILGVDR----NASQDDIKKAFRELAKKYHPDANPGNKE-AEEKFKEIAEAYEVLSDP 59

Query: 145 RK 146
           +K
Sbjct: 60  QK 61

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) (taxid: 263820)

>sp|Q52702|DNAJ_RHOCA Chaperone protein DnaJ OS=Rhodobacter capsulatus GN=dnaJ PE=3 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 5/61 (8%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y VLG+ +   A     EIK A+R+KAKE HPD+NQG + AAEA+FKEV  +Y+ +K   
Sbjct: 7   YEVLGVSKGASA----EEIKKAYRSKAKELHPDRNQG-QSAAEAQFKEVNGAYDVLKDGD 61

Query: 146 K 146
           K
Sbjct: 62  K 62

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Rhodobacter capsulatus (taxid: 1061)

>sp|A7HZ38|DNAJ_PARL1 Chaperone protein DnaJ OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=dnaJ PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 43/60 (71%), Gaps = 5/60 (8%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y VLG+ R   A     E+K A+R+ AK++HPDQNQG+KE AE +FKE+  +Y+A+K E+
Sbjct: 7   YDVLGVSRNASA----DELKKAYRSLAKKYHPDQNQGDKE-AEQRFKELNEAYDALKDEQ 61

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)

>sp|A9KG87|DNAJ_COXBN Chaperone protein DnaJ OS=Coxiella burnetii (strain Dugway 5J108-111) GN=dnaJ PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y VLG++R      TEAE+K AFR  A ++HPD+N G+K+ AE KFKE   +YE +   
Sbjct: 6   YYEVLGVNR----NATEAEVKKAFRRLAMKYHPDRNPGDKD-AEVKFKEAREAYEVLCDS 60

Query: 145 RK 146
           RK
Sbjct: 61  RK 62

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Coxiella burnetii (strain Dugway 5J108-111) (taxid: 434922)

>sp|B6J7U6|DNAJ_COXB1 Chaperone protein DnaJ OS=Coxiella burnetii (strain CbuK_Q154) GN=dnaJ PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y VLG++R      TEAE+K AFR  A ++HPD+N G+K+ AE KFKE   +YE +   
Sbjct: 6   YYEVLGVNR----NATEAEVKKAFRRLAMKYHPDRNPGDKD-AEVKFKEAREAYEVLCDS 60

Query: 145 RK 146
           RK
Sbjct: 61  RK 62

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Coxiella burnetii (strain CbuK_Q154) (taxid: 434924)

>sp|B6IZJ1|DNAJ_COXB2 Chaperone protein DnaJ OS=Coxiella burnetii (strain CbuG_Q212) GN=dnaJ PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y VLG++R      TEAE+K AFR  A ++HPD+N G+K+ AE KFKE   +YE +   
Sbjct: 6   YYEVLGVNR----NATEAEVKKAFRRLAMKYHPDRNPGDKD-AEVKFKEAREAYEVLCDS 60

Query: 145 RK 146
           RK
Sbjct: 61  RK 62

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Coxiella burnetii (strain CbuG_Q212) (taxid: 434923)

>sp|Q73XZ6|DNAJ1_MYCPA Chaperone protein DnaJ 1 OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=dnaJ1 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 6/62 (9%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y +LG+ R      ++AEIK A+R  A+E HPD N    EAA+AKFKE+ V+YE +   
Sbjct: 5   YYGLLGVSR----GASDAEIKRAYRKLARELHPDVNP--DEAAQAKFKEISVAYEVLSDP 58

Query: 145 RK 146
            K
Sbjct: 59  EK 60

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Mycobacterium paratuberculosis (taxid: 1770)

>sp|Q2NVZ0|DNAJ_SODGM Chaperone protein DnaJ OS=Sodalis glossinidius (strain morsitans) GN=dnaJ PE=3 SV=1

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 83  SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIK 142
           S +Y +LG+ R       E EIK A++ +A +FHPD+N+GN E AEAKFKE+  +YE + 
Sbjct: 4   SDYYEILGVSR----DAEEREIKKAYKRQAMKFHPDRNRGNAE-AEAKFKEIKEAYEVLT 58

Query: 143 QERK 146
             +K
Sbjct: 59  DAQK 62

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Sodalis glossinidius (strain morsitans) (taxid: 343509)

>sp|Q5E3A8|DNAJ_VIBF1 Chaperone protein DnaJ OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=dnaJ PE=3 SV=1

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 5/61 (8%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y VLG+ R      +E +IK A++  A +FHPD+NQG+  AAE KFKEV V+YE +   +
Sbjct: 7   YEVLGVSR----DASERDIKKAYKRLAMKFHPDRNQGDDTAAE-KFKEVKVAYEILTDAQ 61

Query: 146 K 146
           K
Sbjct: 62  K 62

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Vibrio fischeri (strain ATCC 700601 / ES114) (taxid: 312309)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
224067160	230	predicted protein [Populus trichocarpa]	0.966	0.630	0.782	4e-60
224081863	255	predicted protein [Populus trichocarpa]	0.966	0.568	0.721	1e-56
255537962	246	heat shock protein binding protein, puta	0.9	0.548	0.789	9e-56
297813203	234	hypothetical protein ARALYDRAFT_351886 [	0.98	0.628	0.687	4e-52
225458924	249	PREDICTED: uncharacterized protein LOC10	0.893	0.538	0.746	2e-50
363814549	221	uncharacterized protein LOC100776208 [Gl	0.853	0.579	0.746	3e-50
19310566	277	unknown protein [Arabidopsis thaliana]	0.98	0.530	0.673	3e-50
356510636	226	PREDICTED: uncharacterized protein LOC10	0.853	0.566	0.738	7e-50
334186395	216	chaperone DnaJ-domain containing protein	0.98	0.680	0.673	9e-50
334186393	230	chaperone DnaJ-domain containing protein	0.98	0.639	0.673	1e-49

>gi|224067160|ref|XP_002302385.1| predicted protein [Populus trichocarpa] gi|222844111|gb|EEE81658.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 126/147 (85%), Gaps = 2/147 (1%)

Query: 1   MREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKAD 60
           M+E YEEEMERVERIRRMQSVFNRERNKY + +E WR+N    G YH +FQRDDWYWK D
Sbjct: 83  MQEAYEEEMERVERIRRMQSVFNRERNKYTRDHEKWRENG--PGAYHQNFQRDDWYWKTD 140

Query: 61  PSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQN 120
            S+R+QRTNFR+  R+S SYSLSHHYSVLGLDR R  PYTEAEIKTAFR KAKEFHPDQN
Sbjct: 141 TSFREQRTNFRRTSRDSGSYSLSHHYSVLGLDRSRTIPYTEAEIKTAFRTKAKEFHPDQN 200

Query: 121 QGNKEAAEAKFKEVMVSYEAIKQERKD 147
           Q NKEAAEAKFKEVM+SYEAIK ERK+
Sbjct: 201 QDNKEAAEAKFKEVMISYEAIKLERKN 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081863|ref|XP_002306506.1| predicted protein [Populus trichocarpa] gi|222855955|gb|EEE93502.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/158 (72%), Positives = 126/158 (79%), Gaps = 13/158 (8%)

Query: 1   MREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKAD 60
           M+E +EEEMERVERIRRMQSVFNRERNK+K+ YE WR+N    G  H HFQRDDWYWK D
Sbjct: 97  MQEAHEEEMERVERIRRMQSVFNRERNKFKRDYERWRENG--PGADHQHFQRDDWYWKTD 154

Query: 61  PSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQN 120
            ++R QRTNFR+ PR+S SY LSHHYSVLGLDR R APYTEAEIKTAFR KAKEFHPDQN
Sbjct: 155 SAFRDQRTNFRRTPRDSGSYPLSHHYSVLGLDRSRTAPYTEAEIKTAFRTKAKEFHPDQN 214

Query: 121 QGNKE-----------AAEAKFKEVMVSYEAIKQERKD 147
           Q NK            A+EAKFKEVM+SYEAIKQERK+
Sbjct: 215 QDNKGWLLFLITNYDLASEAKFKEVMISYEAIKQERKN 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537962|ref|XP_002510046.1| heat shock protein binding protein, putative [Ricinus communis] gi|223550747|gb|EEF52233.1| heat shock protein binding protein, putative [Ricinus communis]

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 119/138 (86%), Gaps = 3/138 (2%)

Query: 11  RVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNF 70
           RVERIRRMQSVFNRERNKYK+SYESWR+N    G YH HFQRDDWYWK D S+R Q+T+F
Sbjct: 111 RVERIRRMQSVFNRERNKYKRSYESWRENG--QGQYHQHFQRDDWYWKTDTSFRDQKTDF 168

Query: 71  RQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAK 130
           R  PRES +Y LS+HYSVLGL+R R APYTEAEIK AFR KAKEFHPDQNQ NKE AEAK
Sbjct: 169 R-TPRESTNYPLSYHYSVLGLNRSRTAPYTEAEIKNAFRTKAKEFHPDQNQDNKEVAEAK 227

Query: 131 FKEVMVSYEAIKQERKDM 148
           FKEVM+SYEAIKQERK+M
Sbjct: 228 FKEVMISYEAIKQERKNM 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813203|ref|XP_002874485.1| hypothetical protein ARALYDRAFT_351886 [Arabidopsis lyrata subsp. lyrata] gi|297320322|gb|EFH50744.1| hypothetical protein ARALYDRAFT_351886 [Arabidopsis lyrata subsp. lyrata]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 101/147 (68%), Positives = 119/147 (80%)

Query: 1   MREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKAD 60
           M+EEYE+E+ERVERIRRMQSVFNRERNK+++ YE+W++ND     YH  FQR DWYWK +
Sbjct: 87  MQEEYEDELERVERIRRMQSVFNRERNKFRRGYENWKENDPGAQQYHQQFQRHDWYWKTE 146

Query: 61  PSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQN 120
            S+R QRTN ++PP +   Y LSHHYSVLGL R R  PYTEAEIK AFR KA EFHPDQN
Sbjct: 147 SSHRNQRTNHQEPPDQRRVYPLSHHYSVLGLSRSRATPYTEAEIKKAFREKALEFHPDQN 206

Query: 121 QGNKEAAEAKFKEVMVSYEAIKQERKD 147
           Q NK  AEAKFKEV++SYEAIK+ERK+
Sbjct: 207 QDNKVVAEAKFKEVLLSYEAIKEERKE 233

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458924|ref|XP_002285499.1| PREDICTED: uncharacterized protein LOC100248937 [Vitis vinifera] gi|302142151|emb|CBI19354.3| unnamed protein product [Vitis vinifera]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/138 (74%), Positives = 111/138 (80%), Gaps = 4/138 (2%)

Query: 15  IRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPP 74
           I+RMQSVFNRERNKYK+SYESWR+N    G YH HFQRDDWYWK D SY+ QR N R+ P
Sbjct: 114 IKRMQSVFNRERNKYKRSYESWRENG--EGPYHQHFQRDDWYWKTDTSYKYQRANAREIP 171

Query: 75  RE--SESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFK 132
           R+  S SY LSHHY  LGLDR R  PYTEAEIK AFRAKA EFHPDQNQ NKEAAEAKFK
Sbjct: 172 RDRTSASYPLSHHYLTLGLDRTRAKPYTEAEIKNAFRAKAMEFHPDQNQDNKEAAEAKFK 231

Query: 133 EVMVSYEAIKQERKDMNS 150
           EVM SYEAIK ERK+ +S
Sbjct: 232 EVMTSYEAIKLERKNGSS 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814549|ref|NP_001241946.1| uncharacterized protein LOC100776208 [Glycine max] gi|255634498|gb|ACU17613.1| unknown [Glycine max]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 97/130 (74%), Positives = 112/130 (86%), Gaps = 2/130 (1%)

Query: 18  MQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPRES 77
           +QSVFNRERNKYK+SYESWR +    G YH HFQR+DWYWKAD S+R +RTN+++ PRES
Sbjct: 91  VQSVFNRERNKYKRSYESWRGSG--PGAYHQHFQREDWYWKADTSFRDKRTNYQETPRES 148

Query: 78  ESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVS 137
            +Y+LSHHYSVLGLDR RK PY+EAEIKTAFR KAKE+HPDQNQ N  AAEAKFKEV+ S
Sbjct: 149 GNYALSHHYSVLGLDRFRKTPYSEAEIKTAFRTKAKEYHPDQNQDNIVAAEAKFKEVLTS 208

Query: 138 YEAIKQERKD 147
           YEAIKQERK+
Sbjct: 209 YEAIKQERKN 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19310566|gb|AAL85016.1| unknown protein [Arabidopsis thaliana]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 115/147 (78%)

Query: 1   MREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKAD 60
           M+EEYE+E+ERV RIRRMQSVFNRERNK+++ YE+W +ND     YH  FQR DWYWK +
Sbjct: 130 MQEEYEDELERVARIRRMQSVFNRERNKFRRGYENWTENDPGAQQYHQQFQRHDWYWKTE 189

Query: 61  PSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQN 120
            S+R QRTN ++P  +   Y LSHHYSVLGL R R  PYTEAEIK AFR KA EFHPDQN
Sbjct: 190 SSHRNQRTNHQEPSDQRRVYPLSHHYSVLGLSRSRATPYTEAEIKKAFREKALEFHPDQN 249

Query: 121 QGNKEAAEAKFKEVMVSYEAIKQERKD 147
           Q NK  AEAKFKEV++SYEAIKQE K+
Sbjct: 250 QDNKIVAEAKFKEVLLSYEAIKQEIKE 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510636|ref|XP_003524043.1| PREDICTED: uncharacterized protein LOC100812371 [Glycine max]

 Score =  201 bits (512), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 96/130 (73%), Positives = 112/130 (86%), Gaps = 2/130 (1%)

Query: 18  MQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPRES 77
           MQSVFNRERNKYK+SYESWR++    G YH H QR+DWYWKAD S+R +RTN+R+ PRES
Sbjct: 96  MQSVFNRERNKYKRSYESWRESG--PGAYHQHSQREDWYWKADTSFRDKRTNYRETPRES 153

Query: 78  ESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVS 137
            +Y+LSHHYSVLGLDR RK PY+EAEIKTAFR KAKE+HPDQNQ N  AAE+KFKEV+ S
Sbjct: 154 GNYALSHHYSVLGLDRFRKTPYSEAEIKTAFRTKAKEYHPDQNQDNIVAAESKFKEVLTS 213

Query: 138 YEAIKQERKD 147
           YEAIKQER++
Sbjct: 214 YEAIKQERRN 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186395|ref|NP_001190686.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|21689789|gb|AAM67538.1| unknown protein [Arabidopsis thaliana] gi|332657189|gb|AEE82589.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score =  201 bits (510), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 115/147 (78%)

Query: 1   MREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKAD 60
           M+EEYE+E+ERV RIRRMQSVFNRERNK+++ YE+W +ND     YH  FQR DWYWK +
Sbjct: 69  MQEEYEDELERVARIRRMQSVFNRERNKFRRGYENWTENDPGAQQYHQQFQRHDWYWKTE 128

Query: 61  PSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQN 120
            S+R QRTN ++P  +   Y LSHHYSVLGL R R  PYTEAEIK AFR KA EFHPDQN
Sbjct: 129 SSHRNQRTNHQEPSDQRRVYPLSHHYSVLGLSRSRATPYTEAEIKKAFREKALEFHPDQN 188

Query: 121 QGNKEAAEAKFKEVMVSYEAIKQERKD 147
           Q NK  AEAKFKEV++SYEAIKQE K+
Sbjct: 189 QDNKIVAEAKFKEVLLSYEAIKQEIKE 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186393|ref|NP_567329.2| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|332657188|gb|AEE82588.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 115/147 (78%)

Query: 1   MREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKAD 60
           M+EEYE+E+ERV RIRRMQSVFNRERNK+++ YE+W +ND     YH  FQR DWYWK +
Sbjct: 83  MQEEYEDELERVARIRRMQSVFNRERNKFRRGYENWTENDPGAQQYHQQFQRHDWYWKTE 142

Query: 61  PSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQN 120
            S+R QRTN ++P  +   Y LSHHYSVLGL R R  PYTEAEIK AFR KA EFHPDQN
Sbjct: 143 SSHRNQRTNHQEPSDQRRVYPLSHHYSVLGLSRSRATPYTEAEIKKAFREKALEFHPDQN 202

Query: 121 QGNKEAAEAKFKEVMVSYEAIKQERKD 147
           Q NK  AEAKFKEV++SYEAIKQE K+
Sbjct: 203 QDNKIVAEAKFKEVLLSYEAIKQEIKE 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
UNIPROTKB|F1SR79	325	DNAJB2 "Uncharacterized protei	0.36	0.166	0.5	1.5e-07
DICTYBASE|DDB_G0291568	459	dnaja1 "DnaJ homolog subfamily	0.366	0.119	0.473	1.7e-07
TIGR_CMR|CBU_1289	374	CBU_1289 "chaperone protein dn	0.306	0.122	0.531	2e-07
UNIPROTKB|B0CM59	277	DNAJB2 "DnaJ homolog, subfamil	0.293	0.158	0.522	2.9e-07
MGI|MGI:1928739	277	Dnajb2 "DnaJ (Hsp40) homolog,	0.293	0.158	0.522	2.9e-07
UNIPROTKB|Q58DD3	278	DNAJB2 "DnaJ (Hsp40) homolog,	0.293	0.158	0.522	2.9e-07
UNIPROTKB|P25686	324	DNAJB2 "DnaJ homolog subfamily	0.293	0.135	0.522	4.1e-07
UNIPROTKB|B0KWI7	324	DNAJB2 "DnaJ homolog, subfamil	0.293	0.135	0.522	4.1e-07
UNIPROTKB|P08622	376	dnaJ [Escherichia coli K-12 (t	0.3	0.119	0.5	5.5e-07
RGD|1591035	259	Dnajb2 "DnaJ (Hsp40) homolog,	0.26	0.150	0.564	1.1e-06

UNIPROTKB|F1SR79 DNAJB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 126 (49.4 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 28/56 (50%), Positives = 36/56 (64%)

Query:    91 LDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
             LD  R A  T  +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct:     8 LDVPRSA--TADDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

GO:0090086 "negative regulation of protein deubiquitination" evidence=IEA

GO:0090084 "negative regulation of inclusion body assembly" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0016234 "inclusion body" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

DICTYBASE|DDB_G0291568 dnaja1 "DnaJ homolog subfamily A member 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 128 (50.1 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 27/57 (47%), Positives = 38/57 (66%)

Query:    92 DRLRKAP-YTEAEIKTAFRAKAKEFHPDQNQG-NKEAAEAKFKEVMVSYEAIKQERK 146
             +RL   P  TE E+K A+R  A ++HPD+NQG  K+AAEAKFK++  +YE +    K
Sbjct:     9 ERLGVKPDCTEDELKKAYRKMAVKYHPDKNQGPGKDAAEAKFKDISEAYEVLSDPEK 65

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TIGR_CMR|CBU_1289 CBU_1289 "chaperone protein dnaJ" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 25/47 (53%), Positives = 33/47 (70%)

Query:   100 TEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
             TEAE+K AFR  A ++HPD+N G+K+A E KFKE   +YE +   RK
Sbjct:    17 TEAEVKKAFRRLAMKYHPDRNPGDKDA-EVKFKEAREAYEVLCDSRK 62

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|B0CM59 DNAJB2 "DnaJ homolog, subfamily B, member 2, isoform 1 (Predicted)" [Papio anubis (taxid:9555)]

 Score = 122 (48.0 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query:   103 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
             +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct:    18 DIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

MGI|MGI:1928739 Dnajb2 "DnaJ (Hsp40) homolog, subfamily B, member 2" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query:   103 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
             +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct:    18 DIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0016234 "inclusion body" evidence=ISO

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0031593 "polyubiquitin binding" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0070628 "proteasome binding" evidence=ISO

GO:0090084 "negative regulation of inclusion body assembly" evidence=ISO

GO:0090086 "negative regulation of protein deubiquitination" evidence=ISO

UNIPROTKB|Q58DD3 DNAJB2 "DnaJ (Hsp40) homolog, subfamily B, member 2" [Bos taurus (taxid:9913)]

 Score = 122 (48.0 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query:   103 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
             +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct:    18 DIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0090086 "negative regulation of protein deubiquitination" evidence=IEA

GO:0090084 "negative regulation of inclusion body assembly" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0016234 "inclusion body" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

UNIPROTKB|P25686 DNAJB2 "DnaJ homolog subfamily B member 2" [Homo sapiens (taxid:9606)]

 Score = 122 (48.0 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query:   103 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
             +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct:    18 DIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0030308 "negative regulation of cell growth" evidence=IGI

GO:0051082 "unfolded protein binding" evidence=TAS

GO:0006986 "response to unfolded protein" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000502 "proteasome complex" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0016234 "inclusion body" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IPI

GO:0031593 "polyubiquitin binding" evidence=IDA

GO:0070628 "proteasome binding" evidence=IDA

GO:0090086 "negative regulation of protein deubiquitination" evidence=IDA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0090084 "negative regulation of inclusion body assembly" evidence=IDA

UNIPROTKB|B0KWI7 DNAJB2 "DnaJ homolog, subfamily B, member 2 isoform b (Predicted)" [Callithrix jacchus (taxid:9483)]

 Score = 122 (48.0 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query:   103 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
             +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct:    18 DIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

UNIPROTKB|P08622 dnaJ [Escherichia coli K-12 (taxid:83333)]

 Score = 122 (48.0 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query:   101 EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
             E EI+ A++  A ++HPD+NQG+KEA EAKFKE+  +YE +   +K
Sbjct:    18 EREIRKAYKRLAMKYHPDRNQGDKEA-EAKFKEIKEAYEVLTDSQK 62

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA;IMP

GO:0006457 "protein folding" evidence=IDA

GO:0042026 "protein refolding" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IEA;IDA

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006260 "DNA replication" evidence=IEA;IMP

GO:0009408 "response to heat" evidence=IEA;IEP

GO:0046872 "metal ion binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043335 "protein unfolding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

RGD|1591035 Dnajb2 "DnaJ (Hsp40) homolog, subfamily B, member 2" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query:   103 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAI 141
             +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +
Sbjct:    18 DIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVL 56

GO:0000502 "proteasome complex" evidence=IEA;ISO

GO:0008285 "negative regulation of cell proliferation" evidence=IEA;ISO

GO:0016234 "inclusion body" evidence=IEA;ISO

GO:0030308 "negative regulation of cell growth" evidence=IEA;ISO

GO:0030433 "ER-associated protein catabolic process" evidence=IEA;ISO

GO:0030544 "Hsp70 protein binding" evidence=IEA;ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA;ISO

GO:0031593 "polyubiquitin binding" evidence=IEA;ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0070628 "proteasome binding" evidence=IEA;ISO

GO:0090084 "negative regulation of inclusion body assembly" evidence=IEA;ISO

GO:0090086 "negative regulation of protein deubiquitination" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-14
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-12
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	3e-12
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	3e-12
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	3e-11
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	3e-11
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	7e-11
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	9e-11
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-10
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	6e-10
pfam00226	63	pfam00226, DnaJ, DnaJ domain	8e-10
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-09
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	2e-09
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	7e-09
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	1e-08
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	2e-08
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	2e-08
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	3e-08
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	5e-08
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	6e-08
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	2e-07
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	3e-07
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	2e-06
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	3e-06
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	4e-06
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	5e-06
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	2e-05
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	2e-05
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	4e-05
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	4e-05
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	9e-05
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	2e-04
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	3e-04
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	5e-04
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	0.002

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 5/61 (8%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y VLG+ R   A  +E EIK A+R  A ++HPD+N G+KE AE KFKE+  +YE +   +
Sbjct: 7   YEVLGVSR--NA--SEDEIKKAYRKLAMKYHPDRNPGDKE-AEEKFKEIKEAYEVLSDPQ 61

Query: 146 K 146
           K
Sbjct: 62  K 62

Length = 371

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 5/61 (8%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y +LG+ +   A  +E EIK A+R  AK++HPD+N G+KEA E KFKE+  +YE +    
Sbjct: 7   YEILGVSK--DA--SEEEIKKAYRKLAKKYHPDRNPGDKEAEE-KFKEINEAYEVLSDPE 61

Query: 146 K 146
           K
Sbjct: 62  K 62

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y +LG+DR      TE EIK A+R  AK++HPD N G+KE AE KFKE+  +YE +   
Sbjct: 7   YYEILGVDR----NATEEEIKKAYRRLAKKYHPDLNPGDKE-AEQKFKEINEAYEILSDP 61

Query: 145 RK 146
           +K
Sbjct: 62  QK 63

Length = 386

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 57.6 bits (140), Expect = 3e-12
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y +LG+ R      +  EIK A+R  A ++HPD+N G+KE AE KFKE+  +YE +   
Sbjct: 3   YYEILGVPRDA----SLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58

Query: 145 RK 146
            K
Sbjct: 59  EK 60

Length = 60

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 5/65 (7%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y VLGL++      ++ EIK AFR  A ++HPD+N+GNKE AE KFKE+  +Y+ +   
Sbjct: 6   YYEVLGLEK----GASDDEIKKAFRKLAIKYHPDKNKGNKE-AEEKFKEINEAYQVLSDP 60

Query: 145 RKDMN 149
           +K   
Sbjct: 61  QKKAQ 65

Length = 380

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 59.5 bits (145), Expect = 3e-11
 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 6/61 (9%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y +LG+ +   A  +E EIK A+R  AK++HPD+N+ +KE AE KFKE+  +YE +    
Sbjct: 3   YEILGVSK--DA--SEEEIKKAYRKLAKKYHPDRNK-DKE-AEEKFKEINEAYEVLSDPE 56

Query: 146 K 146
           K
Sbjct: 57  K 57

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 58.4 bits (141), Expect = 7e-11
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 4/62 (6%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y +LG+DR      ++ +IK AFR  AK++HPD + GNK  AE KFKE+  +YE +   
Sbjct: 5   YYKILGVDR----NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP 60

Query: 145 RK 146
           +K
Sbjct: 61  QK 62

Length = 365

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 58.1 bits (141), Expect = 9e-11
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 6/55 (10%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYE 139
           +Y +LG+ R   A  ++AEIK A+R  A+E HPD N    E A+ KFKE+ V+YE
Sbjct: 5   YYGLLGVSR--NA--SDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYE 53

Length = 378

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y VLG+ +      TEAEIK A+R  A+E+HPD N+G+ +A E +FKE+  +Y+ +  E
Sbjct: 11  YYKVLGVPK----DATEAEIKKAYRKLAREYHPDANKGDAKAEE-RFKEISEAYDVLSDE 65

Query: 145 RK 146
           +K
Sbjct: 66  KK 67

Length = 389

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 56.0 bits (135), Expect = 6e-10
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y VLG+ R       + EIK A+R  A ++HPD+N  NKE AE  FKEV  +YE +  +
Sbjct: 5   YYEVLGVSR----SADKDEIKKAYRKLALKYHPDKNPDNKE-AEEHFKEVNEAYEVLSND 59

Query: 145 RK 146
            K
Sbjct: 60  DK 61

Length = 397

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 51.4 bits (124), Expect = 8e-10
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y +LG+ R      ++ EIK A+R  A ++HPD+N G+  A E KFKE+  +YE +   
Sbjct: 2   YYEILGVPRDA----SDEEIKKAYRKLALKYHPDKNPGDPAAEE-KFKEINEAYEVLSDP 56

Query: 145 RK 146
            K
Sbjct: 57  EK 58

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 9/67 (13%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAI--- 141
           +Y VLG+ +      T  EIK A+R KA ++HPD+N G+KE AE KFKE   +Y+ +   
Sbjct: 7   YYEVLGVSK----TATVDEIKKAYRKKAIQYHPDKNPGDKE-AEEKFKEAAEAYDVLSDP 61

Query: 142 -KQERKD 147
            K+ R D
Sbjct: 62  DKRSRYD 68

Length = 386

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y VLG+ R      +E EIK A+R  A ++HPD+N  N E AE KFKE   +YE ++  
Sbjct: 6   YYEVLGVSR----DASEDEIKKAYRKLALQYHPDRNPDNPE-AEQKFKEAAEAYEVLRDA 60

Query: 145 RK 146
            K
Sbjct: 61  EK 62

Length = 373

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y++LG+ +      +  EIK A+R  A ++HPD+N G+ E AE +FKEV  +YE +   
Sbjct: 3   YYTILGVSK----TASPEEIKKAYRKLAVKYHPDKNPGDAE-AEKRFKEVSEAYEVLSDA 57

Query: 145 RK 146
           +K
Sbjct: 58  QK 59

Length = 391

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y +LG+ +       + EIK+A+R  A ++HPD+N+GNKE +E KFKE   +YE ++  
Sbjct: 6   YYDILGVSK----SANDEEIKSAYRKLAIKYHPDKNKGNKE-SEEKFKEATEAYEILRDP 60

Query: 145 RK 146
           +K
Sbjct: 61  KK 62

Length = 372

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 47.9 bits (115), Expect = 2e-08
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 5/55 (9%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYE 139
           +Y +LG+        ++ EIK A+R  A ++HPD+N  + EA E KFKE+  +YE
Sbjct: 2   YYDILGVPPDA----SDEEIKKAYRKLALKYHPDKNPDDPEAEE-KFKEINEAYE 51

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 8/62 (12%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEA-AEAKFKEVMVSYEAIKQE 144
           Y  LG+ +      ++ EIK A+R  +K++HPD    NKE  AE K+KEV  +YE +   
Sbjct: 7   YDRLGVSK----DASQDEIKKAYRKLSKKYHPDI---NKEPGAEEKYKEVQEAYETLSDP 59

Query: 145 RK 146
           +K
Sbjct: 60  QK 61

Length = 380

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y +LG+ R      +E EIK ++R  A ++HPD+N G+KE AE  FKE   +YE +   
Sbjct: 6   YYEILGVTR----DASEEEIKKSYRKLAMKYHPDRNPGDKE-AEELFKEAAEAYEVLSDP 60

Query: 145 RK 146
           +K
Sbjct: 61  KK 62

Length = 366

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 6/62 (9%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y VLG+ +      ++ EIK A+R  +K++HPD N+  +E A+ KFKE+  +YE +  +
Sbjct: 6   YYEVLGVSK----SASKDEIKKAYRKLSKKYHPDINK--EEGADEKFKEISEAYEVLSDD 59

Query: 145 RK 146
           +K
Sbjct: 60  QK 61

Length = 376

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 50.2 bits (120), Expect = 6e-08
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y +LG+ R      T+ EIK A++   KE+HPD++  N++ AE KFKE+  +YE +   
Sbjct: 6   YYEILGVSR----NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP 61

Query: 145 RK 146
           +K
Sbjct: 62  QK 63

Length = 369

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 100 TEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
           +  EIK A+R  A+E HPD N G+  AAE +FK V  +++ +    K
Sbjct: 22  SAEEIKKAYRKLARELHPDANPGDP-AAEERFKAVSEAHDVLSDPAK 67

Length = 392

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 48.1 bits (114), Expect = 3e-07
 Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 5/62 (8%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y +LGL +      ++ EIK A+R  A ++HPD+N+GNKE AE+ FKE   +YE +  +
Sbjct: 5   YYEILGLSK----GASKDEIKKAYRKIAIKYHPDKNKGNKE-AESIFKEATEAYEVLIDD 59

Query: 145 RK 146
            K
Sbjct: 60  NK 61

Length = 365

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 6/62 (9%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y VLG+DR       + EIK A+R  A+++HPD ++  +E AE KFKE+  +Y  +  +
Sbjct: 7   YYEVLGVDR----NADKKEIKKAYRKLARKYHPDVSE--EEGAEEKFKEISEAYAVLSDD 60

Query: 145 RK 146
            K
Sbjct: 61  EK 62

Length = 378

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 8/57 (14%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEA-AEAKFKEVMVSYEAI 141
           Y +LG+ R         E+K A+R  A+++HPD    NKE  AE +FKE+  +YE +
Sbjct: 6   YEILGVSRDADKD----ELKRAYRRLARKYHPDV---NKEPGAEDRFKEINRAYEVL 55

Length = 374

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 6/62 (9%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y +LG+ R      T+ EIK A+R  A+++HPD N+ N EA E KFKE+  +Y+ +   
Sbjct: 5   YYEILGVSR----NATQEEIKKAYRRLARKYHPDFNK-NPEAEE-KFKEINEAYQVLSDP 58

Query: 145 RK 146
            K
Sbjct: 59  EK 60

Length = 382

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y VLG+DR         E+K A+R  A+++HPD N+     AE KFKEV  +Y+ +   
Sbjct: 6   YYEVLGVDRNASVD----EVKKAYRKLARKYHPDVNK--APDAEDKFKEVKEAYDTLSDP 59

Query: 145 RK 146
           +K
Sbjct: 60  QK 61

Length = 371

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 6/62 (9%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y +LG+ +      ++A++K A+   AK++HPD    + + AE KFKE+  +Y+ +K E
Sbjct: 5   YYQILGVSKTA----SQADLKKAYLKLAKQYHPDTT--DAKDAEKKFKEINAAYDVLKDE 58

Query: 145 RK 146
           +K
Sbjct: 59  QK 60

Length = 372

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEV 134
           +Y VLG+ +      +E EI+ A+R  AK++HPD N+     A  K  E+
Sbjct: 6   YYEVLGVSKTA----SEQEIRQAYRKLAKQYHPDLNK--SPDAHDKMVEI 49

Length = 372

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 4/45 (8%)

Query: 103 EIKTAFRAKAKEFHPDQNQGNKEA-AEAKFKEVMVSYEAIKQERK 146
            IKTA+R  A+++HPD    +KE  AEA+FKEV  ++E +  E++
Sbjct: 20  TIKTAYRRLARKYHPDV---SKEPDAEARFKEVAEAWEVLSDEQR 61

Length = 306

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y +LG+ R   A     EIK+A+R  A ++HPD+N+  ++ A  KF ++  +Y  +   
Sbjct: 4   YYELLGVSRTASA----DEIKSAYRKLALKYHPDRNK--EKGAAEKFAQINEAYAVLSDA 57

Query: 145 RK 146
            K
Sbjct: 58  EK 59

Length = 371

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEA-AEAKFKEVMVSYEAIKQ 143
           +Y +LGL +      +  +IK A+R  A ++HPD+   NKE  AE KFKE+  +Y  +  
Sbjct: 7   YYEILGLSK----DASVEDIKKAYRKLAMKYHPDK---NKEPDAEEKFKEISEAYAVLSD 59

Query: 144 ERK 146
             K
Sbjct: 60  AEK 62

Length = 377

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y++LG+ +      ++ EIK AF+  A+++HPD N+     AE KFKE+  +Y  +   
Sbjct: 6   YYAILGVPK----NASQDEIKKAFKKLARKYHPDVNK--SPGAEEKFKEINEAYTVLSDP 59

Query: 145 RK 146
            K
Sbjct: 60  EK 61

Length = 291

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
           +Y VLG+DR       E EIK AFR  AK++HPD+N      A + F E+  + + +   
Sbjct: 4   YYEVLGIDR----DADEQEIKKAFRKLAKKYHPDRN--KAPDAASIFAEINEANDVLSNP 57

Query: 145 RKDMN 149
           +K  N
Sbjct: 58  KKRAN 62

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 82  LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVM 135
           L  +Y +LG+        +  EIK A+R  A ++HPD+N G+ + AE KFKE+ 
Sbjct: 5   LLDYYEILGVPPNA----SLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEIN 54

Length = 237

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 75  RESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEV 134
           R          Y VL L +      T +EIK A+R  A + HPD+  G+ E    KFKE+
Sbjct: 20  RRKREVDNEKLYEVLNLSK----DCTTSEIKKAYRKLAIKHHPDKG-GDPE----KFKEI 70

Query: 135 MVSYEAIKQERK 146
             +YE +    K
Sbjct: 71  SRAYEVLSDPEK 82

Length = 421

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.88
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.84
PRK14288	369	chaperone protein DnaJ; Provisional	99.78
PRK14296	372	chaperone protein DnaJ; Provisional	99.77
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.75
PRK14279	392	chaperone protein DnaJ; Provisional	99.75
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.75
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.75
PRK14286	372	chaperone protein DnaJ; Provisional	99.74
PRK14282	369	chaperone protein DnaJ; Provisional	99.74
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.74
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.72
PRK14285	365	chaperone protein DnaJ; Provisional	99.72
PRK14287	371	chaperone protein DnaJ; Provisional	99.71
PRK14277	386	chaperone protein DnaJ; Provisional	99.71
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.71
PRK14295	389	chaperone protein DnaJ; Provisional	99.71
PRK14299	291	chaperone protein DnaJ; Provisional	99.71
PRK14297	380	chaperone protein DnaJ; Provisional	99.71
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.7
PRK14283	378	chaperone protein DnaJ; Provisional	99.7
PRK14276	380	chaperone protein DnaJ; Provisional	99.7
PRK14294	366	chaperone protein DnaJ; Provisional	99.7
PRK14301	373	chaperone protein DnaJ; Provisional	99.7
PRK14278	378	chaperone protein DnaJ; Provisional	99.69
PRK10767	371	chaperone protein DnaJ; Provisional	99.69
PRK14284	391	chaperone protein DnaJ; Provisional	99.69
PRK14298	377	chaperone protein DnaJ; Provisional	99.69
PRK14291	382	chaperone protein DnaJ; Provisional	99.69
PRK14280	376	chaperone protein DnaJ; Provisional	99.69
PRK14290	365	chaperone protein DnaJ; Provisional	99.69
PRK14281	397	chaperone protein DnaJ; Provisional	99.69
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.68
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.66
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.65
PRK14289	386	chaperone protein DnaJ; Provisional	99.65
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.64
PRK14292	371	chaperone protein DnaJ; Provisional	99.64
PRK14300	372	chaperone protein DnaJ; Provisional	99.64
PRK14293	374	chaperone protein DnaJ; Provisional	99.62
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.6
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.6
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.59
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.59
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.57
PRK05014	171	hscB co-chaperone HscB; Provisional	99.55
PHA03102	153	Small T antigen; Reviewed	99.53
PRK01356	166	hscB co-chaperone HscB; Provisional	99.51
PRK00294	173	hscB co-chaperone HscB; Provisional	99.49
PRK03578	176	hscB co-chaperone HscB; Provisional	99.49
PTZ00100	116	DnaJ chaperone protein; Provisional	99.48
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.47
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.47
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.41
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.36
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.32
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.31
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.29
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.29
PRK01773	173	hscB co-chaperone HscB; Provisional	99.23
PHA02624	647	large T antigen; Provisional	99.23
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.15
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.05
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.78
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.76
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.44
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.43
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.68
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.44
KOG0431	453	consensus Auxilin-like protein and related protein	97.12
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	96.63
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.34
PF13446	62	RPT: A repeated domain in UCH-protein	94.67
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	86.02
KOG0724	335	consensus Zuotin and related molecular chaperones	85.5

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=7.1e-23  Score=171.64  Aligned_cols=64  Identities=41%  Similarity=0.689  Sum_probs=59.0

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccccC
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  149 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~~  149 (150)
                      ...|||+||||+++|    |.+|||+|||+||++||||+|++++ +|+++|++|++||+|||||+||..
T Consensus         2 ~~~dyYeiLGV~k~A----s~~EIKkAYRkLA~kyHPD~n~g~~-~AeeKFKEI~eAYEVLsD~eKRa~   65 (371)
T COG0484           2 AKRDYYEILGVSKDA----SEEEIKKAYRKLAKKYHPDRNPGDK-EAEEKFKEINEAYEVLSDPEKRAA   65 (371)
T ss_pred             CccchhhhcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHHHHhCCHHHHHH
Confidence            357999999999999    9999999999999999999999643 499999999999999999999863

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=2e-21  Score=160.02  Aligned_cols=63  Identities=33%  Similarity=0.602  Sum_probs=59.8

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...|||+||||+.+|    +..+||+|||+||+++|||+|++++. |.+.|++|+.||+|||||.+|.
T Consensus        14 ~~rDfYelLgV~k~A----sd~eIKkAYRKLALk~HPDkNpddp~-A~e~F~~in~AYEVLsDpekRk   76 (336)
T KOG0713|consen   14 AGRDFYELLGVPKNA----SDQEIKKAYRKLALKYHPDKNPDDPN-ANEKFKEINAAYEVLSDPEKRK   76 (336)
T ss_pred             cCCCHHHHhCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHHHHhcCHHHHH
Confidence            568999999999999    99999999999999999999998865 9999999999999999999986

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2.3e-19  Score=151.40  Aligned_cols=61  Identities=33%  Similarity=0.606  Sum_probs=56.6

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||+++|    |.++||+|||+||++||||+++.+. .|+++|++|++||+||+||.+|.
T Consensus         3 ~dyY~vLgv~~~A----s~~eIkkayrkla~k~HPD~~~~~~-~a~~~f~~i~~AYevLsd~~kR~   63 (369)
T PRK14288          3 LSYYEILEVEKHS----NQETIKKSYRKLALKYHPDRNAGDK-EAEEKFKLINEAYGVLSDEKKRA   63 (369)
T ss_pred             CChHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCcc-HHHHHHHHHHHHHHHhccHHHHH
Confidence            5899999999999    9999999999999999999997543 38899999999999999999985

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=6.2e-19  Score=148.90  Aligned_cols=61  Identities=31%  Similarity=0.515  Sum_probs=56.6

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||+++|    |.++||+|||+||++||||++++  +.|+++|++|++||+||+||.+|.
T Consensus         3 ~~dyY~~Lgv~~~a----~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~AyevLsD~~KR~   63 (372)
T PRK14296          3 KKDYYEVLGVSKTA----SEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAADVLLDKDKRK   63 (372)
T ss_pred             CCCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHhcCHHHhh
Confidence            36999999999999    99999999999999999999975  348899999999999999999985

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.75  E-value=3.9e-18  Score=108.09  Aligned_cols=60  Identities=43%  Similarity=0.715  Sum_probs=54.4

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK  146 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k  146 (150)
                      .+||+||||++++    +.++|+++|+++++.+|||++++..+.+.+.|..|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~----~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDA----SLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            3799999999998    99999999999999999999876445689999999999999999853

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.5e-18  Score=147.46  Aligned_cols=62  Identities=35%  Similarity=0.547  Sum_probs=57.3

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||+++|    |.++||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus         8 ~~Dyy~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vLsD~~KR~   69 (392)
T PRK14279          8 EKDFYKELGVSSDA----SAEEIKKAYRKLARELHPDANPGDP-AAEERFKAVSEAHDVLSDPAKRK   69 (392)
T ss_pred             ccCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCh-HHHHHHHHHHHHHHHhcchhhhh
Confidence            36999999999999    9999999999999999999997653 48899999999999999999985

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.4e-18  Score=144.23  Aligned_cols=59  Identities=37%  Similarity=0.610  Sum_probs=56.1

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+|+||||+++|    |.+|||+|||+|+++||||||++    +.++|++|..||+|||||++|.
T Consensus         3 ~~~~y~il~v~~~A----s~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~   61 (337)
T KOG0712|consen    3 NTKLYDILGVSPDA----SEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKRE   61 (337)
T ss_pred             ccccceeeccCCCc----CHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHH
Confidence            46799999999999    99999999999999999999998    7899999999999999999985

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.75  E-value=2.6e-18  Score=110.50  Aligned_cols=61  Identities=34%  Similarity=0.658  Sum_probs=56.5

Q ss_pred             chhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           84 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        84 ~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      +||+||||++++    +.++|+++|+++++.+|||+++.....+.+.|..|++||++|++|.+|.
T Consensus         1 ~~y~iLgl~~~~----~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~   61 (64)
T PF00226_consen    1 NPYEILGLPPDA----SDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR   61 (64)
T ss_dssp             HHHHHCTSTTTS----SHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             ChHHHCCCCCCC----CHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence            589999999999    9999999999999999999987665568999999999999999998875

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.3e-18  Score=145.45  Aligned_cols=62  Identities=39%  Similarity=0.704  Sum_probs=57.0

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||+++|    |.++||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus         3 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~kR~   64 (372)
T PRK14286          3 ERSYYDILGVSKSA----NDEEIKSAYRKLAIKYHPDKNKGNK-ESEEKFKEATEAYEILRDPKKRQ   64 (372)
T ss_pred             CCCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCch-HHHHHHHHHHHHHHHhccHHHHH
Confidence            36999999999999    9999999999999999999997643 38899999999999999999885

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.5e-18  Score=144.97  Aligned_cols=63  Identities=38%  Similarity=0.659  Sum_probs=58.1

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||+++|    |.++||+|||+||++||||+++.....|+++|++|++||+||+||.+|.
T Consensus         3 ~~d~y~~lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   65 (369)
T PRK14282          3 KKDYYEILGVSRNA----TQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA   65 (369)
T ss_pred             CCChHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence            36999999999999    9999999999999999999997654458999999999999999999985

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=2.7e-18  Score=146.05  Aligned_cols=64  Identities=30%  Similarity=0.536  Sum_probs=61.1

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ....||+||||..++    ++.+||++||+||++||||++|+..+.|++.|+.|+.||+|||||..|.
T Consensus         6 ~~~c~YE~L~v~~~a----~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~   69 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDA----DDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA   69 (508)
T ss_pred             hhhHHHHHhcccccC----CHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence            567999999999999    9999999999999999999999998899999999999999999999874

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.72  E-value=1.7e-17  Score=103.27  Aligned_cols=55  Identities=38%  Similarity=0.672  Sum_probs=51.0

Q ss_pred             chhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcC
Q 031943           84 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQ  143 (150)
Q Consensus        84 ~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d  143 (150)
                      +||+||||++++    |.++|+++|++|++.+|||++++. ..+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~----~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDA----SDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcC
Confidence            689999999998    999999999999999999998764 4588999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=1e-17  Score=141.22  Aligned_cols=61  Identities=41%  Similarity=0.689  Sum_probs=56.5

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||+++|    |.++||+|||+|+++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus         3 ~d~y~iLgv~~~a----~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~kr~   63 (365)
T PRK14285          3 RDYYEILGLSKGA----SKDEIKKAYRKIAIKYHPDKNKGNK-EAESIFKEATEAYEVLIDDNKRA   63 (365)
T ss_pred             CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHcCcchhH
Confidence            5899999999999    9999999999999999999997653 48899999999999999999885

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.1e-17  Score=141.27  Aligned_cols=60  Identities=40%  Similarity=0.681  Sum_probs=56.0

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||+++|    |.++||+|||+||++||||++++  +.++++|++|++||+||+||.+|.
T Consensus         4 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~   63 (371)
T PRK14287          4 RDYYEVLGVDRNA----SVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKA   63 (371)
T ss_pred             CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHH
Confidence            6999999999999    99999999999999999999874  348899999999999999999885

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.2e-17  Score=141.58  Aligned_cols=62  Identities=47%  Similarity=0.735  Sum_probs=57.0

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||+++|    |.++||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus         4 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~kr~   65 (386)
T PRK14277          4 KKDYYEILGVDRNA----TEEEIKKAYRRLAKKYHPDLNPGDK-EAEQKFKEINEAYEILSDPQKRA   65 (386)
T ss_pred             CCCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCch-HHHHHHHHHHHHHHHhCCHHHHH
Confidence            36999999999999    9999999999999999999997643 48899999999999999999885

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.71  E-value=1.3e-17  Score=142.84  Aligned_cols=58  Identities=36%  Similarity=0.527  Sum_probs=54.2

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..+||+||||+++|    |.++||+|||+||++||||++++     .++|++|++||+||+||.+|.
T Consensus        27 ~~d~Y~vLGV~~~A----s~~eIKkAYrkla~k~HPDk~~~-----~e~F~~i~~AYevLsD~~kR~   84 (421)
T PTZ00037         27 NEKLYEVLNLSKDC----TTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRK   84 (421)
T ss_pred             chhHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHHhccHHHHH
Confidence            57999999999999    99999999999999999999863     479999999999999999985

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.3e-17  Score=141.59  Aligned_cols=61  Identities=44%  Similarity=0.761  Sum_probs=56.5

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||+++|    |.++||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus         9 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~r~   69 (389)
T PRK14295          9 KDYYKVLGVPKDA----TEAEIKKAYRKLAREYHPDANKGDA-KAEERFKEISEAYDVLSDEKKRK   69 (389)
T ss_pred             cCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCch-hHHHHHHHHHHHHHHHCchhhHH
Confidence            5999999999999    9999999999999999999987643 48899999999999999999885

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.5e-17  Score=136.30  Aligned_cols=61  Identities=34%  Similarity=0.624  Sum_probs=56.2

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||+++|    |.++||+|||+||++||||++++  +.++++|++|++||++|+||.+|.
T Consensus         3 ~~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~kr~   63 (291)
T PRK14299          3 YKDYYAILGVPKNA----SQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRR   63 (291)
T ss_pred             CCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhcCHHHHH
Confidence            36999999999999    99999999999999999999874  348899999999999999999884

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.9e-17  Score=140.14  Aligned_cols=61  Identities=44%  Similarity=0.748  Sum_probs=56.8

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||+++|    |.++||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus         4 ~d~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~r~   64 (380)
T PRK14297          4 KDYYEVLGLEKGA----SDDEIKKAFRKLAIKYHPDKNKGNK-EAEEKFKEINEAYQVLSDPQKKA   64 (380)
T ss_pred             CChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCcH-HHHHHHHHHHHHHHHhcCHhhhC
Confidence            6999999999999    9999999999999999999997653 48899999999999999999885

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.5e-17  Score=133.67  Aligned_cols=62  Identities=39%  Similarity=0.586  Sum_probs=58.1

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..++|+||||++++    +.++||++||+|++++|||++++++ ++..+|++||.||++|+||.+|.
T Consensus        30 ~~~LYdVLgl~k~a----t~d~IKKaYR~L~~k~HPD~~gd~P-~~~dkf~eIN~Ay~ILsD~~kR~   91 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTA----TKDEIKKAYRKLALKYHPDKNGDNP-EATDKFKEINTAYAILSDPTKRN   91 (279)
T ss_pred             hhHHHHHhCCCccc----chHHHHHHHHHHHHHhCCCcCCCCc-hhHHHHHHHHHHHHHhcChhhhh
Confidence            56899999999999    9999999999999999999999874 48899999999999999999985

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=1.7e-17  Score=140.42  Aligned_cols=61  Identities=39%  Similarity=0.665  Sum_probs=56.6

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||+++|    |.++||+|||+||++||||++++  +.|+++|++|++||+||+||.+|.
T Consensus         4 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~   64 (378)
T PRK14283          4 KRDYYEVLGVDRNA----DKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQ   64 (378)
T ss_pred             cCChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHH
Confidence            46999999999999    99999999999999999999975  448999999999999999999884

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=1.9e-17  Score=140.12  Aligned_cols=61  Identities=36%  Similarity=0.605  Sum_probs=56.4

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||+++|    |.++||+|||+||++||||++++  +.|+++|++|++||+||+||.+|.
T Consensus         3 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~   63 (380)
T PRK14276          3 NTEYYDRLGVSKDA----SQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRA   63 (380)
T ss_pred             CCCHHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhcCHhhhh
Confidence            36999999999999    99999999999999999999975  348899999999999999999985

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=2.1e-17  Score=139.24  Aligned_cols=62  Identities=39%  Similarity=0.644  Sum_probs=57.0

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||+++|    |.++||+|||+||++||||+++++. .+++.|+.|++||+||+||.+|.
T Consensus         3 ~~d~y~~lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~-~~~~~f~~~~~Ay~vL~d~~~r~   64 (366)
T PRK14294          3 KRDYYEILGVTRDA----SEEEIKKSYRKLAMKYHPDRNPGDK-EAEELFKEAAEAYEVLSDPKKRG   64 (366)
T ss_pred             CCChHHHhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCch-HHHHHHHHHHHHHHHhccHHHHH
Confidence            46999999999999    9999999999999999999997654 38899999999999999999885

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=2.3e-17  Score=139.41  Aligned_cols=62  Identities=42%  Similarity=0.656  Sum_probs=57.0

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||+++|    |.++||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus         3 ~~~~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~kr~   64 (373)
T PRK14301          3 QRDYYEVLGVSRDA----SEDEIKKAYRKLALQYHPDRNPDNP-EAEQKFKEAAEAYEVLRDAEKRA   64 (373)
T ss_pred             CCChHHhcCCCCCC----CHHHHHHHHHHHHHHhCCCcCCCCh-HHHHHHHHHHHHHHHhcchhhhh
Confidence            36999999999999    9999999999999999999997653 48899999999999999999885

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=2.6e-17  Score=139.34  Aligned_cols=60  Identities=43%  Similarity=0.708  Sum_probs=56.0

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||+++|    |.++||+|||+||++||||++++  +.|+++|++|++||+||+||.+|.
T Consensus         3 ~d~y~iLgv~~~a----~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~   62 (378)
T PRK14278          3 RDYYGLLGVSRNA----SDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRR   62 (378)
T ss_pred             CCcceecCCCCCC----CHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhh
Confidence            5899999999999    99999999999999999999974  448899999999999999999885

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=3.2e-17  Score=138.26  Aligned_cols=62  Identities=44%  Similarity=0.709  Sum_probs=56.9

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||+++|    |.++||+|||+||++||||+++++. .|+++|++|++||++|+||.+|.
T Consensus         3 ~~d~y~iLgv~~~a----s~~eik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~r~   64 (371)
T PRK10767          3 KRDYYEVLGVSRNA----SEDEIKKAYRKLAMKYHPDRNPGDK-EAEEKFKEIKEAYEVLSDPQKRA   64 (371)
T ss_pred             CCChHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCcH-HHHHHHHHHHHHHHHhcchhhhh
Confidence            36999999999999    9999999999999999999997544 38899999999999999999885

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=3e-17  Score=139.44  Aligned_cols=61  Identities=38%  Similarity=0.679  Sum_probs=56.3

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||+++|    |.++||+|||+||++||||++++.. .|+++|++|++||+||+||.+|.
T Consensus         1 ~d~y~iLgv~~~a----~~~eikkayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~kR~   61 (391)
T PRK14284          1 MDYYTILGVSKTA----SPEEIKKAYRKLAVKYHPDKNPGDA-EAEKRFKEVSEAYEVLSDAQKRE   61 (391)
T ss_pred             CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCch-HHHHHHHHHHHHHHHhcCHHHHH
Confidence            3899999999999    9999999999999999999998653 48899999999999999998885

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=2.9e-17  Score=138.97  Aligned_cols=61  Identities=34%  Similarity=0.598  Sum_probs=56.3

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||+++|    |.++||+|||+||++||||++++  +.++++|++|++||+||+||.+|.
T Consensus         4 ~~d~y~iLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~kR~   64 (377)
T PRK14298          4 TRDYYEILGLSKDA----SVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRA   64 (377)
T ss_pred             CCCHHHhhCCCCCC----CHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHHHHHhcchHhhh
Confidence            36999999999999    99999999999999999999875  348899999999999999999885

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=2.7e-17  Score=139.30  Aligned_cols=60  Identities=38%  Similarity=0.657  Sum_probs=55.9

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||+++|    |.++||+|||+||++||||++++  +.++++|+.|++||+||+||.+|.
T Consensus         3 ~d~Y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vLsd~~kR~   62 (382)
T PRK14291          3 KDYYEILGVSRNA----TQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRK   62 (382)
T ss_pred             CCHHHhhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhcCHHHHH
Confidence            5899999999999    99999999999999999999975  347899999999999999999885

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=3.3e-17  Score=138.56  Aligned_cols=60  Identities=37%  Similarity=0.683  Sum_probs=55.9

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .+||+||||+++|    |.++||+|||+|+++||||++++.  .|+++|++|++||+||+||.+|.
T Consensus         4 ~~~y~iLgv~~~a----~~~eik~ayr~la~~~HpD~~~~~--~a~~~f~~i~~Ay~vL~d~~kr~   63 (376)
T PRK14280          4 RDYYEVLGVSKSA----SKDEIKKAYRKLSKKYHPDINKEE--GADEKFKEISEAYEVLSDDQKRA   63 (376)
T ss_pred             CChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHhccHhHHH
Confidence            6999999999999    999999999999999999998753  38899999999999999999885

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=4.2e-17  Score=137.42  Aligned_cols=62  Identities=44%  Similarity=0.730  Sum_probs=57.9

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||+++|    |.++||+|||+|+++||||++++..+.|+++|+.|++||+||+||.+|.
T Consensus         3 ~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~   64 (365)
T PRK14290          3 KDYYKILGVDRNA----SQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR   64 (365)
T ss_pred             CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhh
Confidence            5899999999999    9999999999999999999998765568999999999999999999885

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=3.9e-17  Score=139.02  Aligned_cols=61  Identities=43%  Similarity=0.669  Sum_probs=56.4

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||+++|    |.++||+|||+||++||||++++.. .|+++|++|++||++|+||.+|.
T Consensus         3 ~d~y~iLgv~~~a----~~~eikkayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~r~   63 (397)
T PRK14281          3 RDYYEVLGVSRSA----DKDEIKKAYRKLALKYHPDKNPDNK-EAEEHFKEVNEAYEVLSNDDKRR   63 (397)
T ss_pred             CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCch-HHHHHHHHHHHHHHHhhhhhhhh
Confidence            5899999999999    9999999999999999999997653 38899999999999999999875

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=5e-17  Score=133.32  Aligned_cols=62  Identities=39%  Similarity=0.673  Sum_probs=59.3

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||.||||+.++    |..+|++||+..+++||||||++++. |.++|+.|.+||+||+|+..|.
T Consensus         4 ~~dyY~lLgi~~~a----t~~eIkKaYr~kaL~~HPDKNp~dP~-A~ekFq~L~eAy~VL~D~~~R~   65 (296)
T KOG0691|consen    4 DTDYYDLLGISEDA----TDAEIKKAYRKKALQYHPDKNPGDPQ-AAEKFQELSEAYEVLSDEESRA   65 (296)
T ss_pred             cchHHHHhCCCCCC----CHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHHHHhcCHHHHH
Confidence            57999999999999    99999999999999999999999987 9999999999999999999885

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.66  E-value=1.3e-16  Score=131.63  Aligned_cols=61  Identities=34%  Similarity=0.619  Sum_probs=56.1

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||++++    |.++||+|||+||++||||++++.  .++++|++|++||++|+||.+|.
T Consensus         3 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~k~HPD~~~~~--~~~~~f~~i~~Ay~~L~~~~kr~   63 (306)
T PRK10266          3 LKDYYAIMGVKPTD----DLKTIKTAYRRLARKYHPDVSKEP--DAEARFKEVAEAWEVLSDEQRRA   63 (306)
T ss_pred             cCChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHhhhHHHHH
Confidence            46999999999999    999999999999999999998652  48899999999999999999884

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.7e-16  Score=130.10  Aligned_cols=61  Identities=44%  Similarity=0.665  Sum_probs=57.1

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..+||+||||+++|    +..|||+||++|+++||||.+.+.  .|.++|++|.+||++|+|+.+|.
T Consensus        42 ~~d~Y~vLgv~~~A----t~~EIK~Af~~LaKkyHPD~n~~~--~a~~kF~eI~~AYEiLsd~eKR~  102 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNA----TLSEIKSAFRKLAKKYHPDVNKDK--EASKKFKEISEAYEILSDEEKRQ  102 (288)
T ss_pred             CcchhhhhCcCCCC----CHHHHHHHHHHHHHhhCCCCCCCc--chhhHHHHHHHHHHHhcCHHHHH
Confidence            34999999999999    999999999999999999999875  49999999999999999999885

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=2.2e-16  Score=133.85  Aligned_cols=62  Identities=42%  Similarity=0.680  Sum_probs=57.0

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||+++|    |.++|++|||+||++||||+++++. .|+++|++|++||++|+||.+|.
T Consensus         4 ~~~~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~   65 (386)
T PRK14289          4 KRDYYEVLGVSKTA----TVDEIKKAYRKKAIQYHPDKNPGDK-EAEEKFKEAAEAYDVLSDPDKRS   65 (386)
T ss_pred             cCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCCh-HHHHHHHHHHHHHHHhcCHHHHH
Confidence            36999999999999    9999999999999999999997654 48899999999999999998875

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.64  E-value=1.9e-16  Score=132.77  Aligned_cols=59  Identities=41%  Similarity=0.705  Sum_probs=54.6

Q ss_pred             chhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           84 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        84 ~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      |||+||||+++|    |.++||+||++||++||||+++.  +.++++|+.|++||+||+||.+|.
T Consensus         1 d~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~   59 (354)
T TIGR02349         1 DYYEILGVSKDA----SEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRA   59 (354)
T ss_pred             ChHHhCCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHH
Confidence            699999999999    99999999999999999999873  347899999999999999999885

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=2.6e-16  Score=132.80  Aligned_cols=61  Identities=31%  Similarity=0.597  Sum_probs=56.2

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      +.|||+||||+++|    |.++||+||++|+++||||++++  ..+.++|+.|++||+||+||.+|.
T Consensus         1 ~~d~y~~Lgv~~~a----~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~~~i~~Ay~vL~d~~~r~   61 (371)
T PRK14292          1 MMDYYELLGVSRTA----SADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRA   61 (371)
T ss_pred             CCChHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--hhHHHHHHHHHHHHHHhcchhhhh
Confidence            35899999999999    99999999999999999999974  348899999999999999999885

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=2.9e-16  Score=132.67  Aligned_cols=60  Identities=35%  Similarity=0.686  Sum_probs=55.4

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||+++|    |.++||+|||+|+++||||+++.  ..++++|++|++||++|+|+.+|.
T Consensus         3 ~~~y~iLgv~~~a----s~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~   62 (372)
T PRK14300          3 QDYYQILGVSKTA----SQADLKKAYLKLAKQYHPDTTDA--KDAEKKFKEINAAYDVLKDEQKRA   62 (372)
T ss_pred             CChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhhhHhHhh
Confidence            5899999999999    99999999999999999999874  237889999999999999999885

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=6.2e-16  Score=130.68  Aligned_cols=60  Identities=33%  Similarity=0.625  Sum_probs=55.5

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||++++    |.++||+|||+|+++||||++++  +.++++|+.|++||+||+||.+|.
T Consensus         3 ~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~vL~~~~~R~   62 (374)
T PRK14293          3 ADYYEILGVSRDA----DKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRA   62 (374)
T ss_pred             CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHHHHHHhchHHHH
Confidence            5899999999999    99999999999999999999875  337899999999999999999884

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.60  E-value=1.3e-15  Score=139.31  Aligned_cols=62  Identities=23%  Similarity=0.356  Sum_probs=57.4

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||+++|    |..+||+|||+||++||||++++.  .|..+|+.|++||+||+||.+|.
T Consensus       571 ~d~dYYdILGVs~dA----S~~EIKKAYRKLAlkyHPDKN~~~--~A~ekFq~I~EAYeVLSDp~kRk  632 (1136)
T PTZ00341        571 PDTLFYDILGVGVNA----DMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKK  632 (1136)
T ss_pred             CCCChHHHcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHhCCHHHHH
Confidence            457999999999999    999999999999999999999875  37889999999999999999985

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=2e-15  Score=114.89  Aligned_cols=64  Identities=36%  Similarity=0.609  Sum_probs=58.4

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||++++    +..+|+++|+++++++|||+++.+...+.+.|+.|++||++|+|+..|.
T Consensus         4 ~~~~~y~iLgv~~~a----s~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~   67 (237)
T COG2214           4 DLLDYYEILGVPPNA----SLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA   67 (237)
T ss_pred             hhhhHHHHhCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence            467999999999999    9999999999999999999998765358899999999999999998874

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1.5e-15  Score=129.74  Aligned_cols=64  Identities=34%  Similarity=0.578  Sum_probs=58.6

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ--GNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~--~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      +..++|.+|+|+++|    |.++|++|||++++.|||||..  +.++.|++.|..|..||+||+||.+|.
T Consensus         7 ~e~e~Ya~LNlpkdA----t~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa   72 (546)
T KOG0718|consen    7 DEIELYALLNLPKDA----TDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA   72 (546)
T ss_pred             chhhHHHHhCCCccc----CHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            456999999999999    9999999999999999999974  446679999999999999999999884

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1.7e-15  Score=118.53  Aligned_cols=63  Identities=30%  Similarity=0.533  Sum_probs=56.0

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..-|+|+||||++++    |..|||+|||+|++++||||++.. .+.++.|..|++||+.|+|+..|-
T Consensus        97 ~~fDPyEILGl~pga----s~~eIKkaYR~LSik~HPDK~~~~-~~~e~~~~~I~KAY~aLTD~~sre  159 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGA----SEKEIKKAYRRLSIKYHPDKQPPE-EGDEEFFEAIAKAYQALTDKKSRE  159 (230)
T ss_pred             hcCCcHHhhCCCCCC----CHHHHHHHHHHhhhhhCCCcCCCc-chhHHHHHHHHHHHHHhcchhhHH
Confidence            345999999999999    999999999999999999998653 337789999999999999998764

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=3e-15  Score=118.43  Aligned_cols=64  Identities=33%  Similarity=0.571  Sum_probs=57.3

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG-NKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~-~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...++|+||||..+|    |..+|++||++|++.||||+++. +...++++|+.|+.||.||+|..+|.
T Consensus        12 ~~~d~YevLGVer~a----~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~   76 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDA----TDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRA   76 (264)
T ss_pred             cccCHHHHhhhcccC----CHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            345999999999999    99999999999999999999852 23469999999999999999998885

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.55  E-value=1.3e-14  Score=110.91  Aligned_cols=64  Identities=17%  Similarity=0.319  Sum_probs=54.5

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH----HHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~----~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .+||+||||++..  .++..+|+++|++|++++|||+..+..+    .+.+.|..||+||++|+||.+|.
T Consensus         1 ~~yf~llgl~~~~--~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra   68 (171)
T PRK05014          1 MDYFTLFGLPARY--DIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRA   68 (171)
T ss_pred             CCHHHHCCCCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHH
Confidence            3799999999964  4489999999999999999999754322    36789999999999999999875

>PHA03102 Small T antigen; Reviewed

Probab=99.53  E-value=1.2e-14  Score=109.19  Aligned_cols=61  Identities=28%  Similarity=0.438  Sum_probs=53.8

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccccC
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  149 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~~  149 (150)
                      ...+|+||||+++|..  |..+||+|||++++++|||++++     .++|++|++||++|+|+.+|..
T Consensus         4 ~~~l~~vLGl~~~A~~--s~~eIKkAYr~la~~~HPDkgg~-----~e~~k~in~Ay~~L~d~~~r~~   64 (153)
T PHA03102          4 SKELMDLLGLPRSAWG--NLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLR   64 (153)
T ss_pred             HHHHHHHcCCCCCCCC--CHHHHHHHHHHHHHHHCcCCCch-----hHHHHHHHHHHHHHhhHHHhcc
Confidence            4578999999998755  89999999999999999999753     4799999999999999988753

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.51  E-value=3.3e-14  Score=108.20  Aligned_cols=64  Identities=19%  Similarity=0.272  Sum_probs=54.1

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~--~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .+||+||||++..  .++..+|+++|++|++++|||++.+..  ..+...+..||+||+||+||.+|.
T Consensus         2 ~~yf~llgl~~~f--~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra   67 (166)
T PRK01356          2 QNYFQLLGLPQEY--NIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA   67 (166)
T ss_pred             CCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            5899999999963  449999999999999999999986432  234567889999999999999875

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.49  E-value=7.4e-14  Score=106.95  Aligned_cols=66  Identities=18%  Similarity=0.310  Sum_probs=56.6

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~----~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||++|||++..  .++..+|+++|++|++++|||+..+..    ..+.+.|..||+||+||+||.+|.
T Consensus         2 ~~~~~F~l~~l~~~f--~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra   71 (173)
T PRK00294          2 GTPCHFALFDLQPSF--RLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA   71 (173)
T ss_pred             CCCChhhhcCcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence            346899999999854  668999999999999999999975432    236788999999999999999885

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.49  E-value=8.9e-14  Score=106.77  Aligned_cols=65  Identities=22%  Similarity=0.354  Sum_probs=54.5

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH----HHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~----~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..+||+||||++..  .++..+|+++|++|++++|||+.....+    .+.+.+..||+||.+|+||.+|.
T Consensus         5 ~~dyf~llglp~~f--~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra   73 (176)
T PRK03578          5 KDDHFSLFGLPARF--ALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA   73 (176)
T ss_pred             CCCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence            36999999999954  4589999999999999999999764322    24566799999999999999875

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.48  E-value=7.5e-14  Score=100.34  Aligned_cols=55  Identities=18%  Similarity=0.237  Sum_probs=48.7

Q ss_pred             CCCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhc
Q 031943           79 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIK  142 (150)
Q Consensus        79 ~~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~  142 (150)
                      .++..++|+||||++++    |.++|+++||+|++++|||++++     .+.|.+|++||++|.
T Consensus        61 ~Ms~~eAy~ILGv~~~A----s~~eIkkaYRrLa~~~HPDkgGs-----~~~~~kIneAyevL~  115 (116)
T PTZ00100         61 PMSKSEAYKILNISPTA----SKERIREAHKQLMLRNHPDNGGS-----TYIASKVNEAKDLLL  115 (116)
T ss_pred             CCCHHHHHHHcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHh
Confidence            33567999999999999    99999999999999999999643     468899999999995

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.47  E-value=6.4e-14  Score=125.87  Aligned_cols=60  Identities=38%  Similarity=0.619  Sum_probs=55.6

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .+||+||||++++    +..+||++||+|+++||||++++  ..+..+|+.|++||++|+||.+|.
T Consensus         2 ~DYYeVLGVs~dA----S~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEAYEVLSDP~KRa   61 (871)
T TIGR03835         2 RDYYEVLGIDRDA----DEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEANDVLSNPKKRA   61 (871)
T ss_pred             CChhHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCCHHHHH
Confidence            4899999999999    99999999999999999999876  347889999999999999999885

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.47  E-value=7.5e-14  Score=113.40  Aligned_cols=61  Identities=36%  Similarity=0.547  Sum_probs=53.4

Q ss_pred             CCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c---hHHHHHHHHHHHHHHHHhcCc
Q 031943           80 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG---N---KEAAEAKFKEVMVSYEAIKQE  144 (150)
Q Consensus        80 ~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~---~---~~~a~~~f~~I~~AYevL~d~  144 (150)
                      .+..++|+||||++++    |.++||++||+|+++||||+..+   +   .+.++++|++|++||++|+..
T Consensus       197 ~~~~~ay~vLgv~~~a----s~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        197 PTLEDAYKVLGVSESD----DDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             CcHHhHHHHcCCCCCC----CHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            3568999999999999    99999999999999999999632   1   245899999999999999864

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.41  E-value=2.4e-13  Score=113.69  Aligned_cols=64  Identities=31%  Similarity=0.524  Sum_probs=58.4

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHHHhcCcccccC
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN--KEAAEAKFKEVMVSYEAIKQERKDMN  149 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~--~~~a~~~f~~I~~AYevL~d~~kR~~  149 (150)
                      .+|||.||||.++|    +..||.+|||++|.+||||-..+.  +..|+.+|.-|..|-+||+||.+|+.
T Consensus       393 kRDYYKILGVkRnA----sKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrq  458 (504)
T KOG0624|consen  393 KRDYYKILGVKRNA----SKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQ  458 (504)
T ss_pred             cchHHHHhhhcccc----cHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhh
Confidence            57999999999999    999999999999999999987654  34699999999999999999999974

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=6.2e-13  Score=113.55  Aligned_cols=61  Identities=36%  Similarity=0.523  Sum_probs=57.0

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|+|.||||+.+.    |.++||+.||++|...|||||..  +.|++.|+.|+.||++|+|+.+|.
T Consensus       234 ~~daYsvlGl~~d~----sd~~lKk~Yrk~A~LVhPDKn~~--~~A~Eafk~Lq~Afevig~~~kR~  294 (490)
T KOG0720|consen  234 ILDAYSALGLPSDC----SDADLKKNYRKKAMLVHPDKNMI--PRAEEAFKKLQVAFEVIGDSVKRK  294 (490)
T ss_pred             CCCchhhcCCCCCC----CHHHHHHHHHhhceEeCCCccCC--hhHHHHHHHHHHHHHHhcchhhhh
Confidence            67999999999988    99999999999999999999974  459999999999999999999885

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=9.2e-13  Score=105.77  Aligned_cols=61  Identities=30%  Similarity=0.562  Sum_probs=55.5

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|+|+||||+..+    +..+|.+|||+||+++|||++++..  +.+.|+.|..||++|.|...|.
T Consensus        32 ~enCYdVLgV~Rea----~KseIakAYRqLARrhHPDr~r~~e--~k~~F~~iAtayeilkd~e~rt   92 (329)
T KOG0722|consen   32 AENCYDVLGVAREA----NKSEIAKAYRQLARRHHPDRNRDPE--SKKLFVKIATAYEILKDNETRT   92 (329)
T ss_pred             chhHHHHhhhhhhc----cHHHHHHHHHHHHHHhCCcccCCch--hhhhhhhhhcccccccchhhHH
Confidence            46999999999999    9999999999999999999998754  5689999999999999987664

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=2.9e-12  Score=99.63  Aligned_cols=69  Identities=26%  Similarity=0.432  Sum_probs=63.3

Q ss_pred             CCCCCCCCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943           74 PRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK  146 (150)
Q Consensus        74 ~~~~~~~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k  146 (150)
                      -.+++.|-..++|+||.|.|..    +.++||+.||+|++..|||+|+++.+.|...|--|.+||..|-|+..
T Consensus        44 lrpgstyfnLNpfeVLqIdpev----~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~  112 (250)
T KOG1150|consen   44 LRPGSTYFNLNPFEVLQIDPEV----TDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKI  112 (250)
T ss_pred             hcCCccccccChHHHHhcCCCC----CHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHH
Confidence            3456677889999999999998    99999999999999999999999988899999999999999999863

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=2.4e-12  Score=109.27  Aligned_cols=63  Identities=40%  Similarity=0.622  Sum_probs=59.1

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..+||.||||...+    +..+||+||+++++.||||++.....+++.+|++|-+||.+|+||.+|.
T Consensus       372 Rkd~ykilGi~~~a----s~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~  434 (486)
T KOG0550|consen  372 RKDWYKILGISRNA----SDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRV  434 (486)
T ss_pred             hhhHHHHhhhhhhc----ccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHh
Confidence            56999999999999    9999999999999999999998876779999999999999999998875

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=2.6e-12  Score=102.16  Aligned_cols=63  Identities=41%  Similarity=0.673  Sum_probs=55.8

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..++|.||||.+.|    +..+|++||++++++||||+++.....+..+|++|.+||++|+|+.+|.
T Consensus         2 ~~d~~~~l~i~~~a----s~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~   64 (306)
T KOG0714|consen    2 GKDYYKILGIARSA----SEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRK   64 (306)
T ss_pred             cccHHHHhCccccc----cHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhh
Confidence            35899999999988    8889999999999999999987763346668999999999999998875

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.23  E-value=2.3e-11  Score=93.18  Aligned_cols=65  Identities=18%  Similarity=0.213  Sum_probs=55.3

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~----~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      +.|||++|||++.  ..++...|++.|+.|.+.+|||+.....    ..+.+....||+||.+|+||.+|.
T Consensus         1 ~~nyF~lf~lp~~--F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA   69 (173)
T PRK01773          1 MNNPFALFDLPVD--FQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA   69 (173)
T ss_pred             CCChHHhcCCCCC--CCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence            3689999999994  4679999999999999999999974432    346677899999999999999875

>PHA02624 large T antigen; Provisional

Probab=99.23  E-value=1.4e-11  Score=109.33  Aligned_cols=60  Identities=25%  Similarity=0.387  Sum_probs=52.8

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..++|+||||++++..  +..+||+|||+++++||||++++     +++|++|+.||++|+|+.++.
T Consensus        10 ~~elyelLGL~~~A~g--s~~eIKkAYRkLAkkyHPDKgGd-----eekfk~Ln~AYevL~d~~k~~   69 (647)
T PHA02624         10 SKELMDLLGLPMAAWG--NLPLMRKAYLRKCKEYHPDKGGD-----EEKMKRLNSLYKKLQEGVKSA   69 (647)
T ss_pred             HHHHHHHcCCCCCCCC--CHHHHHHHHHHHHHHHCcCCCCc-----HHHHHHHHHHHHHHhcHHHhh
Confidence            4689999999997744  88999999999999999999753     579999999999999987764

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.15  E-value=2.4e-11  Score=104.07  Aligned_cols=63  Identities=25%  Similarity=0.496  Sum_probs=56.0

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG----NKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~----~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .-|+|+||||+.++    +..+||++||+|+.++||||.+.    ...+.++.++.|++||..|+|...|.
T Consensus        97 ~fDPyEILGI~~~t----s~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~re  163 (610)
T COG5407          97 GFDPYEILGIDQDT----SERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRE  163 (610)
T ss_pred             CCChHHhhcccCCC----cHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            34899999999999    99999999999999999999654    34568999999999999999987764

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.05  E-value=4.7e-10  Score=84.68  Aligned_cols=51  Identities=14%  Similarity=0.279  Sum_probs=43.6

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHHHHHHhcCccccc
Q 031943           98 PYTEAEIKTAFRAKAKEFHPDQNQGN----KEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        98 ~~s~~eIkkayr~la~~~HPDk~~~~----~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .++..+|+++|++|++++|||+....    ...+...|..||+||++|+||.+|.
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra   56 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRA   56 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhH
Confidence            46889999999999999999985432    2347789999999999999999885

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=6.7e-09  Score=84.43  Aligned_cols=68  Identities=22%  Similarity=0.452  Sum_probs=54.7

Q ss_pred             CCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           80 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ-GNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        80 ~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~-~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      +...|+|.+|||+.-. ...+..+|.++.++.+.+||||+.. +....+.+.|+.|++||+||+|+.+|.
T Consensus        40 Wk~~DlYa~lgLskyR-~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~  108 (379)
T COG5269          40 WKKVDLYALLGLSKYR-TKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRL  108 (379)
T ss_pred             hhhhhHHHHhchHhhh-cCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHh
Confidence            3568999999998753 2237788888999999999999962 112237899999999999999998874

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.5e-08  Score=94.16  Aligned_cols=63  Identities=24%  Similarity=0.405  Sum_probs=52.4

Q ss_pred             CCCCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCc
Q 031943           78 ESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE  144 (150)
Q Consensus        78 ~~~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~  144 (150)
                      ..++..+.|+||.|+-+-...-..+.|+++|++||.+|||||||.    ..++|..||+||+.|+..
T Consensus      1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE----GRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE----GREMFERVNKAYELLSSE 1338 (2235)
T ss_pred             CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch----HHHHHHHHHHHHHHHHHH
Confidence            344667899999998664333355899999999999999999987    568999999999999843

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=3.1e-07  Score=73.41  Aligned_cols=56  Identities=21%  Similarity=0.501  Sum_probs=48.5

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH-HhcC
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYE-AIKQ  143 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYe-vL~d  143 (150)
                      ...+|.||||..++    +..+|+.+|..|++.+|||.+....  ....|..|.+||. ||+.
T Consensus        46 ~~e~fril~v~e~~----~adevr~af~~lakq~hpdsgs~~a--daa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   46 IMECFRILGVEEGA----DADEVREAFHDLAKQVHPDSGSEEA--DAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHhcccccC----chhHHHHHHHHHHHHcCCCCCCccc--cHHHHHHHHHHHHHHHHH
Confidence            45899999999999    9999999999999999999875432  5678999999998 6653

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=4.6e-07  Score=64.03  Aligned_cols=56  Identities=18%  Similarity=0.172  Sum_probs=47.5

Q ss_pred             CCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCc
Q 031943           80 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE  144 (150)
Q Consensus        80 ~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~  144 (150)
                      ++....-.||||++++    +.+.||.|+|++....|||+.++.     -.-.+||+|+++|...
T Consensus        53 Msr~EA~lIL~v~~s~----~k~KikeaHrriM~~NHPD~GGSP-----YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   53 MSRREAALILGVTPSL----DKDKIKEAHRRIMLANHPDRGGSP-----YLASKINEAKDLLEGT  108 (112)
T ss_pred             cchHHHHHHhCCCccc----cHHHHHHHHHHHHHcCCCcCCCCH-----HHHHHHHHHHHHHhcc
Confidence            3556788999999988    999999999999999999998763     3345699999999754

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=5.8e-05  Score=56.88  Aligned_cols=66  Identities=20%  Similarity=0.401  Sum_probs=52.9

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ----GNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~----~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||.++|.....  .+++.-++--|....+++|||+..    .+...|.+...+||+||.+|+||-.|.
T Consensus         6 ~~~~ff~~Fg~e~~~--~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA   75 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSF--KIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARA   75 (168)
T ss_pred             hHHHHHHHhccccCC--CCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence            457899999988744  447777777999999999999942    223357788999999999999998774

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.00011  Score=56.09  Aligned_cols=55  Identities=33%  Similarity=0.523  Sum_probs=47.3

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--C-c---hHHHHHHHHHHHHHHHHh
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ--G-N---KEAAEAKFKEVMVSYEAI  141 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~--~-~---~~~a~~~f~~I~~AYevL  141 (150)
                      .+.|.+||+...+    +..+|+++|+++....|||+-.  + .   .+.+.+.+++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~----~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKA----DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhh----hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999    9999999999999999999831  1 1   245889999999999865

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=97.12  E-value=0.00077  Score=58.83  Aligned_cols=45  Identities=31%  Similarity=0.423  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHHHhcC
Q 031943           99 YTEAEIKTAFRAKAKEFHPDQNQGN------KEAAEAKFKEVMVSYEAIKQ  143 (150)
Q Consensus        99 ~s~~eIkkayr~la~~~HPDk~~~~------~~~a~~~f~~I~~AYevL~d  143 (150)
                      |+...||++||+.++.+||||.++.      +=.|++.|-.+++|+.....
T Consensus       400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~~  450 (453)
T KOG0431|consen  400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFNQ  450 (453)
T ss_pred             cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3889999999999999999997543      12477778888888876543

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=96.63  E-value=0.0048  Score=45.14  Aligned_cols=56  Identities=16%  Similarity=0.208  Sum_probs=38.8

Q ss_pred             CCCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcC
Q 031943           79 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQ  143 (150)
Q Consensus        79 ~~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d  143 (150)
                      .++......||||++..    +.++|.+.|..|-...+|+++++     .-.-.+|..|.+.|..
T Consensus        54 ~Mtl~EA~~ILnv~~~~----~~eeI~k~y~~Lf~~Nd~~kGGS-----fYLQSKV~rAKErl~~  109 (127)
T PF03656_consen   54 GMTLDEARQILNVKEEL----SREEIQKRYKHLFKANDPSKGGS-----FYLQSKVFRAKERLEQ  109 (127)
T ss_dssp             ---HHHHHHHHT--G------SHHHHHHHHHHHHHHT-CCCTS------HHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCCCcc----CHHHHHHHHHHHHhccCCCcCCC-----HHHHHHHHHHHHHHHH
Confidence            46778999999999977    99999999999999999998865     2334557777776653

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.0017  Score=49.61  Aligned_cols=63  Identities=22%  Similarity=0.337  Sum_probs=48.1

Q ss_pred             chhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH----HHHHHHHHHHHHHHHhcCccccc
Q 031943           84 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        84 ~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~----~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      +++.++|+...+  .+....++..|+.+.+.+|||+......    .+...+..++.||.+|.+|-.|.
T Consensus         2 ~~~~~~~~~~~f--~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra   68 (174)
T COG1076           2 DGFVLFGLPRAF--QIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRA   68 (174)
T ss_pred             CcccccccHHHH--HHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            345566776644  3366789999999999999999754322    25678999999999999997764

>PF13446 RPT: A repeated domain in UCH-protein

Probab=94.67  E-value=0.1  Score=33.00  Aligned_cols=29  Identities=28%  Similarity=0.524  Sum_probs=26.3

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHH
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAK  113 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~  113 (150)
                      +..++|.+|||+++.    +.+.|-.+|...+.
T Consensus         3 ~~~~Ay~~Lgi~~~~----~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    3 DVEEAYEILGIDEDT----DDDFIISAFQSKVN   31 (62)
T ss_pred             CHHHHHHHhCcCCCC----CHHHHHHHHHHHHH
Confidence            557899999999888    99999999999988

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=86.02  E-value=1.9  Score=30.79  Aligned_cols=46  Identities=20%  Similarity=0.343  Sum_probs=35.8

Q ss_pred             CHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHHhcCcc
Q 031943          100 TEAEIKTAFRAKAKEFHPDQNQGN---KEAAEAKFKEVMVSYEAIKQER  145 (150)
Q Consensus       100 s~~eIkkayr~la~~~HPDk~~~~---~~~a~~~f~~I~~AYevL~d~~  145 (150)
                      +..+++.|-|.+-++.|||.....   ...-++-++.|+.-.+.|..+.
T Consensus         7 ~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~   55 (112)
T PF14687_consen    7 SSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK   55 (112)
T ss_pred             hhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence            678899999999999999985443   3345667888888888887654

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=85.50  E-value=1.1  Score=37.18  Aligned_cols=47  Identities=21%  Similarity=0.353  Sum_probs=38.0

Q ss_pred             CHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHHHhcCccc
Q 031943          100 TEAEIKTAFRAKAKEFHPDQNQG---NKEAAEAKFKEVMVSYEAIKQERK  146 (150)
Q Consensus       100 s~~eIkkayr~la~~~HPDk~~~---~~~~a~~~f~~I~~AYevL~d~~k  146 (150)
                      +...|..+|+..++..||++...   ..-...+.|++|.+||.+|++...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~   54 (335)
T KOG0724|consen    5 SEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEP   54 (335)
T ss_pred             cHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc
Confidence            77889999999999999998642   112356789999999999998544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-05
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-05
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-05
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-05
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		2e-04
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		3e-04

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 103 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
           +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct: 18  DIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 101 EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
           E EI+ A++  A ++HPD+NQG+KE AEAKFKE+  +YE +   +K
Sbjct: 17  EREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQK 61

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 101 EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
           E EI+ A++  A ++HPD+NQG+KE AEAKFKE+  +YE +   +K
Sbjct: 17  EREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQK 61

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 101 EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
           E EI+ A++  A ++HPD+NQG+KE AEAKFKE+  +YE +   +K
Sbjct: 17  EREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQK 61

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 103 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
           +IK A+R  A  +HPD+N  NKE AE KFK V  +YE +   +K
Sbjct: 25  DIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 91  LDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
           LD  R+A  +   IK A+R  A ++HPD+N  NKE AE +FK+V  +YE +   +K
Sbjct: 15  LDVPRQA--SSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	9e-15
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	2e-14
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	3e-13
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	3e-13
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	5e-13
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	7e-12
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	8e-12
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	1e-11
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-11
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	4e-11
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	2e-09
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-09
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-09
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	2e-09
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-09
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	3e-09
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	3e-09
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	4e-09
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	6e-09
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	2e-08
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	2e-08
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	5e-08
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	2e-07
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	9e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	9e-05
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	5e-04

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 68.4 bits (168), Expect = 9e-15
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 19/102 (18%)

Query: 46  YHHHFQRDDWYWKADPSYRQQRT-NFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEI 104
           +HHH          +  Y Q      +              Y++LG+            I
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSNAMELKDY------------YAILGVQP--TD--DLKTI 45

Query: 105 KTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146
           KTA+R  A+++HPD ++ N   AEAKFK++  ++E +K E++
Sbjct: 46  KTAYRRLARKYHPDVSKEND--AEAKFKDLAEAWEVLKDEQR 85

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 63.8 bits (156), Expect = 2e-14
 Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 5/61 (8%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y +LG+ +       E EI+ A++  A ++HPD+NQG+KE AEAKFKE+  +YE +   +
Sbjct: 6   YEILGVSK----TAEEREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQ 60

Query: 146 K 146
           K
Sbjct: 61  K 61

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 60.8 bits (148), Expect = 3e-13
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y +L + R      +  +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + 
Sbjct: 5   YEILDVPR----SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60

Query: 146 K 146
           K
Sbjct: 61  K 61

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 60.4 bits (147), Expect = 3e-13
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y VLG+        +  +IK A+R  A  +HPD+N  NKE AE KFK V  +YE +   +
Sbjct: 12  YEVLGVQA----SASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSK 67

Query: 146 K 146
           K
Sbjct: 68  K 68

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 60.0 bits (146), Expect = 5e-13
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y VL + R      +   IK A+R  A ++HPD+N  NKE AE +FK+V  +YE +   +
Sbjct: 12  YEVLDVPR----QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAK 67

Query: 146 K 146
           K
Sbjct: 68  K 68

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 57.4 bits (139), Expect = 7e-12
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 71  RQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAK 130
               +   SYS +  Y +LG+        T+A+IK A+  +   +HPD+N G+ E A  +
Sbjct: 5   SSGSQGDCSYSRTALYDLLGVPS----TATQAQIKAAYYRQCFLYHPDRNSGSAE-AAER 59

Query: 131 FKEVMVSYEAIKQERK 146
           F  +  +Y  +     
Sbjct: 60  FTRISQAYVVLGSATL 75

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 59.5 bits (144), Expect = 8e-12
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           YS+LG+ +   A  +  EI+ AF+  A + HPD+N  N   A   F ++  +YE +K E 
Sbjct: 5   YSLLGVSK--TA--SSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDED 59

Query: 146 K 146
            
Sbjct: 60  L 60

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 57.1 bits (138), Expect = 1e-11
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y++LG D L     +  +I   F+ +A E HPD++  N + A   F+++  + E +  E 
Sbjct: 23  YTLLGCDELS----SVEQILAEFKVRALECHPDKHPENPK-AVETFQKLQKAKEILTNEE 77

Query: 146 K 146
            
Sbjct: 78  S 78

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 55.3 bits (134), Expect = 2e-11
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y +LG+ R      ++ EIK A+   AK++HPD N+ + + A+ KF ++  +YE +  E 
Sbjct: 10  YQILGVPR----NASQKEIKKAYYQLAKKYHPDTNKDDPK-AKEKFSQLAEAYEVLSDEV 64

Query: 146 K 146
           K
Sbjct: 65  K 65

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 55.5 bits (134), Expect = 4e-11
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y VLGLD+      T  +IK ++R  A ++HPD+N  N E A  KFKE+  ++  +    
Sbjct: 20  YHVLGLDK----NATSDDIKKSYRKLALKYHPDKNPDNPE-AADKFKEINNAHAILTDAT 74

Query: 146 K 146
           K
Sbjct: 75  K 75

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 50.8 bits (122), Expect = 2e-09
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y +LG+ +      +E +IK AF   A ++HPD+N+     AEAKF+E+  +YE +    
Sbjct: 10  YDILGVPK----SASERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDAN 63

Query: 146 K 146
           +
Sbjct: 64  R 64

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN-----KEAAEAKFKEVMVSYE 139
            YS+LG D    A    +++K  ++     +HPD+   +      E    KF E+  +++
Sbjct: 12  WYSILGADP--SA--NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWK 67

Query: 140 AIKQERK 146
            +  E  
Sbjct: 68  ILGNEET 74

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
              +LGL+R   A      ++ A+  K KEFHPD+        E K K++   Y+ ++  
Sbjct: 13  LMDLLGLER--SAWGNIPLMRKAYLKKCKEFHPDKG-----GDEEKMKKMNTLYKKMEDG 65

Query: 145 RK 146
            K
Sbjct: 66  VK 67

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 50.8 bits (122), Expect = 2e-09
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y +LG+         E E+K  +R  A ++HPD+  G+ E    KFKE+  ++E +   +
Sbjct: 11  YDLLGVSP----SANEQELKKGYRKAALKYHPDKPTGDTE----KFKEISEAFEILNDPQ 62

Query: 146 K 146
           K
Sbjct: 63  K 63

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           YS+LG+ +      +  EI+ AF+  A + HPD+N  N   A   F ++  +YE +K E 
Sbjct: 24  YSLLGVSK----TASSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDED 78

Query: 146 K 146
            
Sbjct: 79  L 79

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 50.5 bits (121), Expect = 3e-09
 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE--AAEAKFKEVMVSYEAIKQ 143
           Y VL ++R     + + ++  A+RA A++ HPD+ +  +E   AE +F+ +  +YE +K 
Sbjct: 18  YDVLEVNR---EEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD 74

Query: 144 ERK 146
           +  
Sbjct: 75  DEA 77

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 49.5 bits (119), Expect = 3e-09
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y  LGL R      ++ EIK A+R +A  +HPD+N+  +  AE KFKE+  +Y+ +   R
Sbjct: 6   YQTLGLAR----GASDEEIKRAYRRQALRYHPDKNK--EPGAEEKFKEIAEAYDVLSDPR 59

Query: 146 K 146
           K
Sbjct: 60  K 60

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 49.7 bits (119), Expect = 4e-09
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN-----KEAAEAKFKEVMVSYEA 140
           YS+LG D         +++K  ++     +HPD+   +      E    KF E+  +++ 
Sbjct: 19  YSILGADP----SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74

Query: 141 IKQERK 146
           +  E  
Sbjct: 75  LGNEET 80

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 48.8 bits (117), Expect = 6e-09
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y +LG+ R      ++ ++K A+R  A +FHPD+N      A   FK +  +Y  +    
Sbjct: 10  YEILGVSR----GASDEDLKKAYRRLALKFHPDKNHAPG--ATEAFKAIGTAYAVLSNPE 63

Query: 146 K 146
           K
Sbjct: 64  K 64

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y VLG+ R      ++A+IK A++  A+E+HPD+N+     AE +F ++  +YE +  E 
Sbjct: 20  YRVLGVSR----TASQADIKKAYKKLAREWHPDKNK--DPGAEDRFIQISKAYEILSNEE 73

Query: 146 K 146
           K
Sbjct: 74  K 74

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 47.8 bits (114), Expect = 2e-08
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 84  HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYE 139
              SV+           E+E K   R    ++HPD+N  N + A   FK +     
Sbjct: 17  EVTSVVEQAWKL----PESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEIN 68

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 47.5 bits (113), Expect = 5e-08
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
             +LGL+R   A      ++ A+  K KEFHPD+        E K K++   Y+ ++   
Sbjct: 11  MDLLGLER--SAWGNIPLMRKAYLKKCKEFHPDKG-----GDEEKMKKMNTLYKKMEDGV 63

Query: 146 K 146
           K
Sbjct: 64  K 64

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144
            + +LG+        +  E+  A+R  A   HPD+       +E  FK V+ +  A+ + 
Sbjct: 29  SWDMLGVKP----GASRDEVNKAYRKLAVLLHPDKCV--APGSEDAFKAVVNARTALLKN 82

Query: 145 RKDMNS 150
            K   S
Sbjct: 83  IKSGPS 88

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 43.0 bits (102), Expect = 9e-07
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 8/61 (13%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
           Y VLG+        ++ E+K A+R  A +FHPD+N         +FK++  +YE +  E+
Sbjct: 11  YDVLGVKP----DASDNELKKAYRKMALKFHPDKNPD----GAEQFKQISQAYEVLSDEK 62

Query: 146 K 146
           K
Sbjct: 63  K 63

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 58  KADPSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHP 117
           + + + +Q R    +  R  +      +Y +LG+ R       + EI  A+R  A ++HP
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN----AKKQEIIKAYRKLALQWHP 412

Query: 118 D--QNQGNKEAAEAKFKEVMVSYE 139
           D  QN+  K+ AE KF ++  + E
Sbjct: 413 DNFQNEEEKKKAEKKFIDIAAAKE 436

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 40.7 bits (95), Expect = 1e-05
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
             +L L R  +       ++ A++ ++   HPD     K  + A  +E+   +   K E 
Sbjct: 14  LELLKLPR--QLWGDFGRMQQAYKQQSLLLHPD-----KGGSHALMQELNSLWGTFKTEV 66

Query: 146 KDMNS 150
            ++  
Sbjct: 67  YNLRM 71

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 22/123 (17%)

Query: 2   REEYEE---EMERVERIRRMQSVF-NRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYW 57
           +EE +      + V    R+     +++    +K  E   + +Y             +  
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK------------FLM 95

Query: 58  KADPSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHP 117
                    +T  RQP   +  Y               K   +  +     R    E  P
Sbjct: 96  SP------IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 118 DQN 120
            +N
Sbjct: 150 AKN 152

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 38.4 bits (89), Expect = 9e-05
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 100 TEAEIKTAFRAKAKEFHPDQNQG--NKEAAEAKFKEVMVSYEAIKQE 144
           T  ++K  +R      HP +  G   ++ A+  F E+  ++   + +
Sbjct: 46  TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 100 TEAEIKTAFRAKAKEFHPDQNQG--NKEAAEAKFKEVMVSYEAIKQERK 146
           T  ++K  +R      HPD+  G   ++ A+  F E+  ++   + + +
Sbjct: 130 TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.83
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.81
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.81
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.81
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.81
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.8
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.8
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.8
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.8
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.79
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.79
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.79
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.78
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.78
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.77
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.76
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.74
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.74
2guz_A	71	Mitochondrial import inner membrane translocase su	99.73
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.73
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.71
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.7
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.7
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.7
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.68
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.68
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.68
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.67
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.66
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.65
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.61
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.57
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.47
2guz_B	65	Mitochondrial import inner membrane translocase su	99.21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.01
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	85.38

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=1.1e-20  Score=126.59  Aligned_cols=64  Identities=38%  Similarity=0.606  Sum_probs=59.6

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||++++    +.++||+||++|++++|||+++...+.+.+.|+.|++||++|+||.+|.
T Consensus         7 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   70 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQA----SSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD   70 (82)
T ss_dssp             SSCCHHHHTTCCTTC----CHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred             CCcCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            467999999999999    9999999999999999999998776678999999999999999999875

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=4.3e-20  Score=128.13  Aligned_cols=65  Identities=29%  Similarity=0.509  Sum_probs=58.5

Q ss_pred             CCCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           79 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        79 ~~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .+...+||+||||++++    +.++||+||++|+++||||++++.. .+.+.|+.|++||+||+||.+|.
T Consensus        13 ~~~~~~~Y~vLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~   77 (99)
T 2yua_A           13 SYSRTALYDLLGVPSTA----TQAQIKAAYYRQCFLYHPDRNSGSA-EAAERFTRISQAYVVLGSATLRR   77 (99)
T ss_dssp             SSCSSHHHHHHTCCTTC----CHHHHHHHHHHHHHHSCTTTCSSCS-HHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             CCCccCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCH-HHHHHHHHHHHHHHHHCCHHHHH
Confidence            34667999999999999    9999999999999999999997544 38899999999999999998875

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=2.9e-20  Score=123.68  Aligned_cols=63  Identities=35%  Similarity=0.587  Sum_probs=57.4

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||++++    +..+|+++|++|++++|||++++.. .+.+.|+.|++||++|+||.+|.
T Consensus         5 ~~~~~y~iLgv~~~a----~~~~Ik~ayr~l~~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~   67 (79)
T 2dn9_A            5 SSGDYYQILGVPRNA----SQKEIKKAYYQLAKKYHPDTNKDDP-KAKEKFSQLAEAYEVLSDEVKRK   67 (79)
T ss_dssp             CCSCHHHHHTCCTTC----CHHHHHHHHHHHHHHTCTTTCSSCT-THHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCH-HHHHHHHHHHHHHHHHCCHHHHH
Confidence            567999999999999    9999999999999999999987543 37899999999999999998875

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=2.8e-20  Score=127.16  Aligned_cols=63  Identities=25%  Similarity=0.359  Sum_probs=57.4

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccccCC
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMNS  150 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~~~  150 (150)
                      ..+||+||||++++    +.++||+||++|+++||||+++..  .+.+.|++|++||++|+||.+|+.+
T Consensus        26 ~~~~y~iLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~--~~~~~f~~i~~Ay~~L~d~~~R~~~   88 (90)
T 2ys8_A           26 SKDSWDMLGVKPGA----SRDEVNKAYRKLAVLLHPDKCVAP--GSEDAFKAVVNARTALLKNIKSGPS   88 (90)
T ss_dssp             CSSHHHHHTCCTTC----CHHHHHHHHHHHHHHHCTTTCCCT--THHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             CCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHHCCcccccCC
Confidence            47999999999999    999999999999999999998753  3788999999999999999998753

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=2.6e-20  Score=127.43  Aligned_cols=64  Identities=39%  Similarity=0.630  Sum_probs=59.3

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||++++    +.++||++|++|+++||||+++...+.+++.|+.|++||++|+||.+|.
T Consensus         7 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   70 (92)
T 2dmx_A            7 GMANYYEVLGVQASA----SPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS   70 (92)
T ss_dssp             CCCCHHHHHTCCTTC----CTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCcCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            567999999999999    9999999999999999999998776678999999999999999998874

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.80  E-value=5.4e-20  Score=127.95  Aligned_cols=63  Identities=41%  Similarity=0.665  Sum_probs=58.4

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      +.+||+||||++++    |.++||+||++|++++|||++++..+.+.+.|+.|++||++|+||.+|.
T Consensus         1 M~d~Y~iLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~   63 (99)
T 2lgw_A            1 MASYYEILDVPRSA----SADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE   63 (99)
T ss_dssp             CCCHHHHSSSCTTS----CHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            36899999999999    9999999999999999999998776678999999999999999998874

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=7.6e-20  Score=121.47  Aligned_cols=62  Identities=31%  Similarity=0.562  Sum_probs=57.1

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||++++    +..+|+++|++|++++|||+++.  +.+.+.|+.|++||++|+||.+|.
T Consensus         5 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~   66 (78)
T 2ctp_A            5 SSGDYYEILGVSRGA----SDEDLKKAYRRLALKFHPDKNHA--PGATEAFKAIGTAYAVLSNPEKRK   66 (78)
T ss_dssp             CSCCHHHHHTCCTTC----CHHHHHHHHHHHHTTSCTTTCSS--HHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCHHHHH
Confidence            567999999999999    99999999999999999999875  348899999999999999998875

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.80  E-value=7.9e-20  Score=125.21  Aligned_cols=65  Identities=22%  Similarity=0.381  Sum_probs=58.3

Q ss_pred             CCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHHhcCccccc
Q 031943           80 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN-----KEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        80 ~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~-----~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      +...+||+||||++++    +..+||+||++|+++||||+++..     .+.+.+.|+.|++||+||+||.+|.
T Consensus        13 ~~~~~~y~iLgv~~~a----s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~   82 (94)
T 1wjz_A           13 TLKKDWYSILGADPSA----NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK   82 (94)
T ss_dssp             SSCSCHHHHTTCCTTC----CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred             CCCCChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            3567999999999999    999999999999999999998642     2458899999999999999999875

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=1.1e-19  Score=123.46  Aligned_cols=62  Identities=35%  Similarity=0.634  Sum_probs=57.1

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||++++    +.++||++|++|++++|||+++.  +.+.+.|+.|++||++|+||.+|.
T Consensus         5 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~~L~d~~~R~   66 (88)
T 2ctr_A            5 SSGSYYDILGVPKSA----SERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRRK   66 (88)
T ss_dssp             CCCSHHHHHTCCTTC----CHHHHHHHHHHHHHHTCTTTCCS--HHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred             CCCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHHHCCHHHHH
Confidence            567999999999999    99999999999999999999885  448899999999999999998874

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.79  E-value=8.2e-20  Score=124.68  Aligned_cols=63  Identities=24%  Similarity=0.258  Sum_probs=57.8

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD  147 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR  147 (150)
                      ...++|+||||++++    |.++||+|||+|+++||||++++..+.+++.|+.|++||++|++...|
T Consensus        14 ~~~~~y~vLgv~~~a----s~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           14 ILKEVTSVVEQAWKL----PESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             CHHHHHHHHHHTTSS----CSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            567999999999999    999999999999999999999887667899999999999999996543

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.79  E-value=3.1e-19  Score=125.92  Aligned_cols=63  Identities=37%  Similarity=0.528  Sum_probs=57.8

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||++++    +.++||+||++|++++|||++++.. .+.+.|+.|++||+||+||.+|.
T Consensus        15 ~~~~~Y~vLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~   77 (109)
T 2ctw_A           15 SGESLYHVLGLDKNA----TSDDIKKSYRKLALKYHPDKNPDNP-EAADKFKEINNAHAILTDATKRN   77 (109)
T ss_dssp             CSCCHHHHHTCCTTC----CHHHHHHHHHHHHHHSCTTTSTTCH-HHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCcH-HHHHHHHHHHHHHHHHcCHHHHH
Confidence            457999999999999    9999999999999999999998654 48899999999999999998875

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.79  E-value=1.4e-19  Score=119.84  Aligned_cols=60  Identities=40%  Similarity=0.678  Sum_probs=55.2

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .+||+||||++++    |.++|++||++|++++|||++++.  .+.+.|+.|++||++|+||.+|.
T Consensus         3 ~~~y~iLgv~~~a----s~~~Ik~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~~L~d~~~R~   62 (77)
T 1hdj_A            3 KDYYQTLGLARGA----SDEEIKRAYRRQALRYHPDKNKEP--GAEEKFKEIAEAYDVLSDPRKRE   62 (77)
T ss_dssp             CCSHHHHTCCTTC----CHHHHHHHHHHHHHTTCTTTCCCT--THHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHHCCHHHHH
Confidence            4899999999999    999999999999999999998753  37899999999999999998875

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.78  E-value=2.1e-19  Score=118.04  Aligned_cols=60  Identities=33%  Similarity=0.605  Sum_probs=55.0

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||++++    |..+|+++|++|++++|||++++.    .+.|+.|++||++|+||.+|.
T Consensus         6 ~~~~~y~iLgl~~~a----~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Ay~~L~d~~~R~   65 (73)
T 2och_A            6 KETGYYDVLGVKPDA----SDNELKKAYRKMALKFHPDKNPDG----AEQFKQISQAYEVLSDEKKRQ   65 (73)
T ss_dssp             CCCCHHHHHTCCTTC----CHHHHHHHHHHHHHHTCTTTCTTC----HHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCcCH----HHHHHHHHHHHHHHCCHHHHH
Confidence            456899999999999    999999999999999999999763    578999999999999999874

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=5.4e-19  Score=120.06  Aligned_cols=62  Identities=35%  Similarity=0.614  Sum_probs=56.6

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||++++    +.++||++|++|++++|||+++..  .+.+.|+.|++||++|+||.+|.
T Consensus        15 ~~~d~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~--~~~~~f~~i~~Ay~~L~d~~~R~   76 (88)
T 2cug_A           15 LDFDPYRVLGVSRTA----SQADIKKAYKKLAREWHPDKNKDP--GAEDRFIQISKAYEILSNEEKRT   76 (88)
T ss_dssp             SSSCHHHHHTCCTTC----CHHHHHHHHHHHHHHSCTTTCCST--THHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCh--hHHHHHHHHHHHHHHHCCHHHHH
Confidence            356999999999999    999999999999999999998763  37899999999999999998874

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=2.3e-19  Score=127.05  Aligned_cols=63  Identities=27%  Similarity=0.460  Sum_probs=57.5

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||++++    +.++||+||++|++++|||++++.. .+.+.|+.|++||+||+||.+|.
T Consensus        18 ~~~d~Y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~   80 (112)
T 2ctq_A           18 DTEDYYTLLGCDELS----SVEQILAEFKVRALECHPDKHPENP-KAVETFQKLQKAKEILTNEESRA   80 (112)
T ss_dssp             CCCCHHHHTTCCTTS----CHHHHHHHHHHHHHTTCTTTCTTCS-THHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCcH-HHHHHHHHHHHHHHHHCCHHHHH
Confidence            457999999999999    9999999999999999999997543 38899999999999999999875

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.76  E-value=6.2e-19  Score=120.77  Aligned_cols=60  Identities=30%  Similarity=0.592  Sum_probs=54.9

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||++++    |.++|+++|++|++++|||++++.    .+.|+.|++||++|+||.+|.
T Consensus         6 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~i~~Ay~~L~d~~~R~   65 (92)
T 2o37_A            6 KETKLYDLLGVSPSA----NEQELKKGYRKAALKYHPDKPTGD----TEKFKEISEAFEILNDPQKRE   65 (92)
T ss_dssp             SCCHHHHHHTCCTTC----CHHHHHHHHHHHHHHHCTTSTTCC----HHHHHHHHHHHHHHTSHHHHH
T ss_pred             cCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCh----HHHHHHHHHHHHHHCCHHHHH
Confidence            456899999999999    999999999999999999999764    469999999999999998875

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.74  E-value=3.5e-19  Score=124.29  Aligned_cols=61  Identities=41%  Similarity=0.738  Sum_probs=55.7

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .+||+||||++++    |.++||++|++|++++|||++++.. .+++.|+.|++||++|+||.+|.
T Consensus         3 ~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~   63 (103)
T 1bq0_A            3 QDYYEILGVSKTA----EEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQKRA   63 (103)
T ss_dssp             CCSTTTTSSCSSC----CHHHHHHHHHHHHTTTCTTTCTTTC-THHHHHHHHTTTTTSTTCSHHHH
T ss_pred             CCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCcH-HHHHHHHHHHHHHHHHCCHHHHH
Confidence            5899999999999    9999999999999999999987543 37899999999999999998875

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.74  E-value=1e-18  Score=116.81  Aligned_cols=60  Identities=18%  Similarity=0.305  Sum_probs=54.0

Q ss_pred             CccchhhhcCcCcC--CCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccccC
Q 031943           81 SLSHHYSVLGLDRL--RKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  149 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~--a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~~  149 (150)
                      ...++|+||||+++  +    |..+||+|||+|++++|||++++     .+.|++|++||++|+|+.+|..
T Consensus         9 ~~~~~y~iLgl~~~~~a----~~~eIk~aYr~la~~~HPDk~~~-----~~~f~~i~~AYe~L~~~~~r~~   70 (79)
T 1faf_A            9 DKERLLELLKLPRQLWG----DFGRMQQAYKQQSLLLHPDKGGS-----HALMQELNSLWGTFKTEVYNLR   70 (79)
T ss_dssp             HHHHHHHHHTCCSSSTT----CHHHHHHHHHHHHHHSSGGGSCC-----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHcCCCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHHhhHHHHHH
Confidence            34689999999998  8    99999999999999999999864     4789999999999999987754

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.73  E-value=3e-18  Score=112.24  Aligned_cols=59  Identities=14%  Similarity=0.166  Sum_probs=52.8

Q ss_pred             CCccchhhhcCcCc-CCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccc
Q 031943           80 YSLSHHYSVLGLDR-LRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD  147 (150)
Q Consensus        80 ~~~~~~Y~iLGl~~-~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR  147 (150)
                      ++..++|+||||++ ++    |.++|+++||+|++++|||++++     .+.|++|++||++|+++..|
T Consensus        11 m~~~~~y~iLgl~~~~a----~~~eIk~ayr~l~~~~HPDk~g~-----~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           11 MNSKEALQILNLTENTL----TKKKLKEVHRKIMLANHPDKGGS-----PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CCHHHHHHHTTCCTTTC----CHHHHHHHHHHHHHHHCGGGTCC-----HHHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHcCCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHhhhhhc
Confidence            35679999999998 68    99999999999999999999753     46999999999999998765

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.73  E-value=4.2e-18  Score=126.54  Aligned_cols=64  Identities=22%  Similarity=0.399  Sum_probs=57.5

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK-----EAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~-----~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||++++    +.++||+||++|++++|||+++...     +.+.+.|+.|++||++|+||.+|.
T Consensus         8 ~~~~~y~iLgv~~~a----~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~   76 (155)
T 2l6l_A            8 PKKDWYSILGADPSA----NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKR   76 (155)
T ss_dssp             CCSHHHHHHTCCTTC----CHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHC
T ss_pred             CCCChhHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            457999999999999    9999999999999999999986542     347899999999999999999885

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.71  E-value=6.9e-18  Score=118.69  Aligned_cols=65  Identities=29%  Similarity=0.592  Sum_probs=57.2

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG--NKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~--~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||++++   +|.++||+||++|++++|||++++  ..+.+.+.|+.|++||++|+||.+|.
T Consensus        13 ~~~~~y~iLgv~~~a---~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~   79 (109)
T 2qsa_A           13 GLENCYDVLEVNREE---FDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT   79 (109)
T ss_dssp             TTSCHHHHTTCCGGG---CCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCHHHHcCCCCCC---CCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            357999999999875   489999999999999999999875  23458899999999999999999874

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.70  E-value=7.7e-18  Score=128.79  Aligned_cols=61  Identities=33%  Similarity=0.579  Sum_probs=56.2

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .+||+||||++++    |.++||+|||+|++++|||++++.. .+.+.|+.|++||++|+||.+|.
T Consensus         2 ~~~y~~l~~~~~a----~~~~ik~ay~~l~~~~HPD~~~~~~-~~~~~f~~i~~Ay~~L~~~~~r~   62 (210)
T 3apq_A            2 QNFYSLLGVSKTA----SSREIRQAFKKLALKLHPDKNPNNP-NAHGDFLKINRAYEVLKDEDLRK   62 (210)
T ss_dssp             CCHHHHHTCCTTC----CHHHHHHHHHHHHHHHCGGGCTTCT-THHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCh-HHHHHHHHHHHHHHHhCCHHHHH
Confidence            5899999999999    9999999999999999999997554 38899999999999999999875

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.70  E-value=1.5e-18  Score=123.62  Aligned_cols=59  Identities=29%  Similarity=0.442  Sum_probs=54.0

Q ss_pred             ccchhhhcCcCcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccccC
Q 031943           82 LSHHYSVLGLDRLRKAPYTE--AEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  149 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~--~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~~  149 (150)
                      ..++|+||||++++    +.  .+||+|||+|++++|||++++     .++|++|++||+||+||.+|..
T Consensus         7 ~~~~Y~iLgv~~~a----s~~~~eIk~aYr~la~~~HPDk~~~-----~e~f~~I~~AYevL~d~~~R~~   67 (114)
T 1gh6_A            7 SLQLMDLLGLERSA----WGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAH   67 (114)
T ss_dssp             HHHHHHHTTCCTTS----CSCHHHHHHHHHHTTTTCCTTTCCT-----TTTTHHHHHHHHHHHHHHHSCC
T ss_pred             hhhHHHHcCCCCCC----CcCHHHHHHHHHHHHHHHCCCCCcc-----HHHHHHHHHHHHHHCCHHHHHH
Confidence            46899999999998    77  999999999999999999875     4789999999999999999864

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.70  E-value=3.5e-18  Score=117.49  Aligned_cols=57  Identities=19%  Similarity=0.374  Sum_probs=51.4

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHHHHHHHhcC
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQ  143 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~--~~a~~~f~~I~~AYevL~d  143 (150)
                      .++|.+|||++.+    |..+||+|||+++++||||++++..  ..|++.|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~a----s~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLV----TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSS----SHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            4689999999999    9999999999999999999987653  2588999999999999975

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.68  E-value=1.4e-17  Score=127.17  Aligned_cols=62  Identities=19%  Similarity=0.388  Sum_probs=56.4

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~--~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .++|+||||++++    |..+||+|||+|+++||||++++..  ..|++.|+.|++||+||+||.+|.
T Consensus       117 ~d~Y~vLgv~~~A----s~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~  180 (182)
T 1n4c_A          117 ETKWKPVGMADLV----TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKP  180 (182)
T ss_dssp             CCCCCCCCGGGGS----SHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cchhhcCCCCCCC----CHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhh
Confidence            5899999999999    9999999999999999999986543  248899999999999999999886

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.68  E-value=7.8e-18  Score=118.48  Aligned_cols=59  Identities=19%  Similarity=0.193  Sum_probs=51.6

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c---hHHHHHHHHHHHHHHHHhcCcc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG---N---KEAAEAKFKEVMVSYEAIKQER  145 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~---~---~~~a~~~f~~I~~AYevL~d~~  145 (150)
                      ..+||.|||++. +    |..+||+|||+|++++||||+++   +   ...|+++|+.|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-A----s~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-I----EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-C----SHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-C----CHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            368999999986 8    99999999999999999999753   1   1247899999999999999985

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.67  E-value=4.1e-17  Score=123.51  Aligned_cols=63  Identities=13%  Similarity=0.310  Sum_probs=55.7

Q ss_pred             chhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH----HHHHHHHHHHHHHHHhcCccccc
Q 031943           84 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        84 ~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~----~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      +||+||||++++  .+|..+|+++||+|+++||||++++..+    .|.+.|+.|++||+||+||.+|.
T Consensus         2 d~y~lLgl~~~a--~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~   68 (171)
T 1fpo_A            2 DYFTLFGLPARY--QLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA   68 (171)
T ss_dssp             HHHHHTTCCSSS--CCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CHHHHCCCCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            799999999976  5599999999999999999999876432    46789999999999999999884

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.66  E-value=1.2e-16  Score=124.35  Aligned_cols=65  Identities=14%  Similarity=0.171  Sum_probs=56.0

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~----~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..+||+||||++++  .+|..+||++||+|+++||||++++..    ..+.+.|+.|++||+||+||.+|.
T Consensus        42 ~~d~y~lLgv~~~~--~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~  110 (207)
T 3bvo_A           42 TRDYFSLMDCNRSF--RVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRG  110 (207)
T ss_dssp             TCCHHHHTTSCSCS--CCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            56999999999863  239999999999999999999987542    246789999999999999999884

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.65  E-value=1e-17  Score=138.32  Aligned_cols=63  Identities=37%  Similarity=0.638  Sum_probs=0.0

Q ss_pred             CCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           80 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        80 ~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      +...+||+||||+++|    |.++||+|||+|+++||||++++.  .|+++|++|++||++|+||.+|.
T Consensus        25 m~~~d~Y~vLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~--~a~~~f~~i~~Ay~vL~d~~~R~   87 (329)
T 3lz8_A           25 MELKDYYAILGVQPTD----DLKTIKTAYRRLARKYHPDVSKEN--DAEAKFKDLAEAWEVLKDEQRRA   87 (329)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             ccccCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCCCCCCCh--HHHHHHHHHHHHHHHhhhhhhhc
Confidence            4567999999999999    999999999999999999998753  48899999999999999999885

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.61  E-value=6.2e-17  Score=122.90  Aligned_cols=59  Identities=29%  Similarity=0.432  Sum_probs=51.0

Q ss_pred             ccchhhhcCcCcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccccC
Q 031943           82 LSHHYSVLGLDRLRKAPYT--EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  149 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s--~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~~  149 (150)
                      ..++|+||||++++    +  .++||+|||+|++++|||++++     ++.|++|++||++|+||.+|..
T Consensus        10 ~~d~Y~vLGl~~~a----s~~~~eIKkAYRkLa~~~HPDk~~~-----~e~F~~I~~AYevLsdp~kR~~   70 (174)
T 2pf4_E           10 SLQLMDLLGLERSA----WGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAH   70 (174)
T ss_dssp             HHHHHHTTTCCGGG----TTCHHHHHHHHHHHGGGCSCC---C-----CTTTTHHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHcCCCCCC----CcCHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHhCCHHHHHH
Confidence            46899999999998    6  7999999999999999999876     3689999999999999998863

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.57  E-value=4.5e-16  Score=118.80  Aligned_cols=60  Identities=17%  Similarity=0.300  Sum_probs=53.3

Q ss_pred             CccchhhhcC------cCc-CCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLG------LDR-LRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLG------l~~-~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+|||      +++ ++    |..+||++||+|++++|||++++    +.+.|+.|++||+||+||.+|.
T Consensus         9 ~~~d~y~ll~~~~p~~~~~~~a----~~~eIk~aYr~la~~~HPDk~~~----a~~~f~~i~~AY~vL~dp~~R~   75 (181)
T 3uo3_A            9 FTSTFYELFPKTFPKKLPIWTI----DQSRLRKEYRQLQAQHHPDMAQQ----GSEQSSTLNQAYHTLKDPLRRS   75 (181)
T ss_dssp             CSCCTGGGCTTTCTTCSCCSCC----CHHHHHHHHHHHHHTCCTTSCCS----CSSGGGSHHHHHHHHHSHHHHH
T ss_pred             CCCCHHHHhccccccCCCCCCC----CHHHHHHHHHHHHHHhCcCCCcc----HHHHHHHHHHHHHHHcChHHHH
Confidence            5679999994      654 56    99999999999999999999986    5688999999999999999875

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.47  E-value=4.3e-15  Score=132.56  Aligned_cols=63  Identities=32%  Similarity=0.538  Sum_probs=34.9

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ...+||+||||+++|    |.++||+|||+|+++||||++++.. .+.+.|+.|++||++|+||.+|.
T Consensus        19 ~~~~~y~~lg~~~~a----~~~~i~~ay~~l~~~~hpd~~~~~~-~~~~~f~~i~~ay~~L~~~~~r~   81 (780)
T 3apo_A           19 HDQNFYSLLGVSKTA----SSREIRQAFKKLALKLHPDKNPNNP-NAHGDFLKINRAYEVLKDEDLRK   81 (780)
T ss_dssp             ----CHHHHTCCTTC----CHHHHHHHHCC------------------------CTHHHHHHSHHHHH
T ss_pred             CCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCh-HHHHHHHHHHHHHHHHcChHHHH
Confidence            457999999999999    9999999999999999999986543 48899999999999999999885

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.21  E-value=1.6e-11  Score=78.98  Aligned_cols=55  Identities=15%  Similarity=0.125  Sum_probs=47.7

Q ss_pred             CccchhhhcCcCcC---CCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCc
Q 031943           81 SLSHHYSVLGLDRL---RKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE  144 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~---a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~  144 (150)
                      +...+|.||||+++   +    +.++|+++||+|+..+|||++++     ...+.+|+.|+++|...
T Consensus         2 t~~EA~~ILgv~~~~~~a----~~~~Ik~~yr~Lm~~nhPDkGGS-----~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            2 TLDESCKILNIEESKGDL----NMDKINNRFNYLFEVNDKEKGGS-----FYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             CHHHHHHHTTCCGGGTCC----SHHHHHHHHHHHHHHTCGGGTCC-----HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCCCCcCcC----CHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHHHH
Confidence            34678999999998   7    99999999999999999999765     46778899999998643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.01  E-value=2.6e-10  Score=92.30  Aligned_cols=61  Identities=30%  Similarity=0.489  Sum_probs=55.8

Q ss_pred             chhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHHHHHHHhcCccccc
Q 031943           84 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        84 ~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~--~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ++|.+||+...+    +..+|+++|+++++++|||+.+...  +.++..|+.|++||++|+||.+|.
T Consensus       383 ~~y~~lg~~~~~----~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~  445 (450)
T 2y4t_A          383 DYYKILGVKRNA----KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK  445 (450)
T ss_dssp             CSGGGSCSSTTC----CTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred             hHHHHhCCCccC----CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            899999999998    9999999999999999999987654  568999999999999999999985

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=85.38  E-value=0.46  Score=41.43  Aligned_cols=44  Identities=11%  Similarity=0.194  Sum_probs=33.1

Q ss_pred             chhhhcCcCcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHH
Q 031943           84 HHYSVLGLDRLRKAPYTE--AEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEA  140 (150)
Q Consensus        84 ~~Y~iLGl~~~a~~~~s~--~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYev  140 (150)
                      ++|.|||++...    ..  .+|+++||+|++.-+++         .+++..|..|..|
T Consensus       630 ~~~~~lG~~~~~----~~lr~~~~~ayr~la~~~~~~---------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          630 STNHILGFPFTS----HGLRLGVEASLRSLARVAPTQ---------RHRYTLVDMANKV  675 (681)
T ss_dssp             SSSEETTEESSH----HHHHHHHHHHHHHHHHHCSSH---------HHHHHHHHHHHHH
T ss_pred             CCcccCCCCCCh----HHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHhccc
Confidence            488999996644    33  56999999999965444         3678888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	3e-05
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	7e-04
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	0.001

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.8 bits (90), Expect = 3e-05
 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 84  HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN--KEAAEAKFKEVMVSYEAI 141
             +  +G+  L     T  ++K  +R      HPD+  G   ++ A+  F E+  ++   
Sbjct: 34  TKWKPVGMADLV----TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 89

Query: 142 KQERK 146
           + + +
Sbjct: 90  ENQGQ 94

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 34.2 bits (78), Expect = 7e-04
 Identities = 7/66 (10%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 85  HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAE----AKFKEVMVSYEA 140
           ++++ GL    +       +   F+   +++HPD+     +A +     +   +  +++ 
Sbjct: 3   YFTLFGLPA--RYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 141 IKQERK 146
           ++    
Sbjct: 61  LRHPLM 66

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 33.4 bits (76), Expect = 0.001
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 86  YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 145
             +L L R  +       ++ A++ ++   HPD+       + A  +E+   +   K E 
Sbjct: 14  LELLKLPR--QLWGDFGRMQQAYKQQSLLLHPDKGG-----SHALMQELNSLWGTFKTEV 66

Query: 146 K 146
            
Sbjct: 67  Y 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.84
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.79
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.77
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.75
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.73
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.73
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.66

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.5e-21  Score=127.90  Aligned_cols=61  Identities=43%  Similarity=0.758  Sum_probs=56.1

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||++++    |.++||+||++|++++|||+++++.. ++..|..|++||+||+||.+|.
T Consensus         3 ~dyY~vLgv~~~A----s~~eIk~aYr~l~~~~HPDk~~~~~~-~~~~f~~i~~Ay~vL~d~~~R~   63 (75)
T d1xbla_           3 QDYYEILGVSKTA----EEREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQKRA   63 (75)
T ss_dssp             CCTTTTTCCSSSC----CHHHHHHHHHHHHHHTCCTTCTTTCH-HHHHHHHHHHHHHHTTSSHHHH
T ss_pred             CCHHHHcCCCCCc----CHHHHHHHHHHHHhhhhhhccCCChH-HHHHHHHHHHHHHhcCCHHHHH
Confidence            5899999999999    99999999999999999999876543 7789999999999999999875

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=6e-20  Score=125.06  Aligned_cols=63  Identities=22%  Similarity=0.414  Sum_probs=56.8

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN-----KEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~-----~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..|||+||||++++    |.++||+||++|++.||||+++..     .+.+++.|+.|++||+||+||.+|.
T Consensus        15 ~~d~Y~iLgv~~~a----s~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~   82 (94)
T d1wjza_          15 KKDWYSILGADPSA----NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK   82 (94)
T ss_dssp             CSCHHHHTTCCTTC----CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred             ccChHHHcCCCCCc----CHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            46999999999999    999999999999999999997543     2458899999999999999999885

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.77  E-value=1.9e-20  Score=131.50  Aligned_cols=60  Identities=28%  Similarity=0.423  Sum_probs=53.7

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      ..++|+||||+.+|..  +.++||+||++||+++|||++++     .++|++|++||+||+||.+|.
T Consensus         7 ~~~ly~iLGv~~~a~~--~~~~IKkAYrkla~k~HPDk~~~-----~e~F~~I~~AY~vLsd~~kR~   66 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWG--NIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYA   66 (114)
T ss_dssp             HHHHHHHTTCCTTSCS--CHHHHHHHHHHTTTTCCTTTCCT-----TTTTHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCCCCCCC--CHHHHHHHHHHHHHHhcccchhh-----HHHHHHHHHHHHHhCCHHHHH
Confidence            4689999999998833  78899999999999999999875     368999999999999999876

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.9e-19  Score=118.21  Aligned_cols=60  Identities=40%  Similarity=0.669  Sum_probs=55.4

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||++++    |.++|++||+++++++|||++....  +.+.|..|++||+||+||.+|.
T Consensus         3 kdyY~iLgv~~~a----s~~eIk~ay~~l~~~~hPD~~~~~~--~~~~~~~i~~Ay~vLsdp~~R~   62 (77)
T d1hdja_           3 KDYYQTLGLARGA----SDEEIKRAYRRQALRYHPDKNKEPG--AEEKFKEIAEAYDVLSDPRKRE   62 (77)
T ss_dssp             CCSHHHHTCCTTC----CHHHHHHHHHHHHHTTCTTTCCCTT--HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CChHHHcCCCCCc----CHHHHHHHHHHHHHHhccccccchh--HHHHHHHHHHHHHHhcCHHHHH
Confidence            4899999999999    9999999999999999999987643  6789999999999999999885

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.8e-19  Score=119.76  Aligned_cols=63  Identities=24%  Similarity=0.258  Sum_probs=57.9

Q ss_pred             CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccc
Q 031943           81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD  147 (150)
Q Consensus        81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR  147 (150)
                      ...++|+||||+.++    |.++||+||++|+++||||+++++.+.|.+.|+.|++||++|+++..+
T Consensus        14 ~~~~~y~iL~v~~~a----s~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~~~~~   76 (88)
T d1iura_          14 ILKEVTSVVEQAWKL----PESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             CHHHHHHHHHHTTSS----CSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            457999999999999    999999999999999999999988878999999999999999876543

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.73  E-value=8.5e-19  Score=115.82  Aligned_cols=61  Identities=18%  Similarity=0.242  Sum_probs=53.6

Q ss_pred             ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccccC
Q 031943           82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  149 (150)
Q Consensus        82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~~  149 (150)
                      ..++|+||||++++  .+|.++||+||++++++||||++++     .++|++||+||++|+|+.+|..
T Consensus        10 ~~~~y~iLgl~~~~--~~~~~~IkkaYr~l~~~~HPDk~g~-----~e~~~~in~Ay~~L~d~~~r~~   70 (79)
T d1fafa_          10 KERLLELLKLPRQL--WGDFGRMQQAYKQQSLLLHPDKGGS-----HALMQELNSLWGTFKTEVYNLR   70 (79)
T ss_dssp             HHHHHHHHTCCSSS--TTCHHHHHHHHHHHHHHSSGGGSCC-----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCC--CCCHHHHHHHHHHHHHHhCcccCCC-----HHHHHHHHHHHHHHCCHHHHHH
Confidence            46899999999976  3389999999999999999999864     4689999999999999987753

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.6e-18  Score=113.35  Aligned_cols=64  Identities=13%  Similarity=0.282  Sum_probs=54.9

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHHHHHHhcCccccc
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN----KEAAEAKFKEVMVSYEAIKQERKDM  148 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~----~~~a~~~f~~I~~AYevL~d~~kR~  148 (150)
                      .|||+||||+.++  .++.++|+++|+++++.+|||+..+.    ...+...|..|++||+||+||.+|.
T Consensus         1 lnyy~lLgl~~~~--~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~   68 (76)
T d1fpoa1           1 MDYFTLFGLPARY--QLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA   68 (76)
T ss_dssp             CHHHHHTTCCSSS--CCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CChHHHCCCCCCC--CCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            3799999999865  34799999999999999999996433    2347889999999999999999885

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=1.8e-17  Score=113.49  Aligned_cols=63  Identities=19%  Similarity=0.375  Sum_probs=56.1

Q ss_pred             cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHHHhcCcccccC
Q 031943           83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN--KEAAEAKFKEVMVSYEAIKQERKDMN  149 (150)
Q Consensus        83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~--~~~a~~~f~~I~~AYevL~d~~kR~~  149 (150)
                      .++|.+|||+..+    |.++||+||+++++.+|||++++.  ...|...|+.|++||++|+||.+|..
T Consensus        33 ~~~y~~Lgl~~~~----t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~   97 (98)
T d1nz6a_          33 ETKWKPVGMADLV----TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPL   97 (98)
T ss_dssp             CCSCCCCCGGGCC----SHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             ccCCeecCCCccC----CHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhc
Confidence            4679999999988    999999999999999999987543  34588999999999999999999863