Citrus Sinensis ID: 031952

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL
ccccccccccEEEEEccccccccccEEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccccccccHHHHHHHHHHcccEEEEEEEcccccccccccccccccccc
ccccccccccccEEEccccEEccccEEEEEEEEEEcccEEEEEEcccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccccccccHHHHHHHHHHcccEEEEEEEcccccccccccccccccccc
msrrktrepkeenvtlgpavrdgehvFGVAHIFAsfndtfihvtdlsgRETLVRITGGmkvkadrdesspYAAMLAAQDVSQRCKELGITALHIKLRatggnktktpgpgAQSALRALARSGmkigriedvtpiptdstrrkggrrgrrl
msrrktrepkeenvtlgpavrdgEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLratggnktktpgpgaQSALRALARsgmkigriedvtpiptdstrrkggrrgrrl
MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAtggnktktpgpgAQSALRALARSGMKIGRIEDVTPIPTDSTrrkggrrgrrL
******************AVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV***********AMLAAQDVSQRCKELGITALHIKLRA****************************************************
***********************EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM******DESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGN***TP*PGAQSALRALARSGMKIGRIEDVTPIPTDSTR**********
**************TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPT**************
***********ENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKT*TPGPGAQSALRALARSGMKIGRIEDVTPIPTDST***********
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MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query150 2.2.26 [Sep-21-2011]
P42036150 40S ribosomal protein S14 yes no 0.926 0.926 0.928 2e-72
P19950149 40S ribosomal protein S14 N/A no 0.92 0.926 0.956 3e-72
P19951150 40S ribosomal protein S14 N/A no 0.906 0.906 0.956 8e-72
Q9CAX6150 40S ribosomal protein S14 yes no 0.926 0.926 0.920 1e-71
Q9SIH0150 40S ribosomal protein S14 yes no 0.926 0.926 0.913 8e-71
O22584150 40S ribosomal protein S14 N/A no 0.926 0.926 0.928 9e-70
P46295153 40S ribosomal protein S14 N/A no 0.9 0.882 0.874 2e-65
P62264151 40S ribosomal protein S14 yes no 0.926 0.920 0.85 3e-65
P62263151 40S ribosomal protein S14 yes no 0.926 0.920 0.85 3e-65
P62265151 40S ribosomal protein S14 yes no 0.926 0.920 0.85 3e-65
>sp|P42036|RS143_ARATH 40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2 Back     alignment and function desciption
 Score =  270 bits (690), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/139 (92%), Positives = 136/139 (97%)

Query: 1   MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MS+RKT+EPK ENVTLGPAVR+GE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMKIGRIEDVTPIPTDST 139
           SGMKIGRIEDVTPIPTDST
Sbjct: 121 SGMKIGRIEDVTPIPTDST 139

Arabidopsis thaliana (taxid: 3702)
>sp|P19950|RS141_MAIZE 40S ribosomal protein S14 OS=Zea mays PE=3 SV=1 Back     alignment and function description
>sp|P19951|RS142_MAIZE 40S ribosomal protein S14 OS=Zea mays PE=3 SV=1 Back     alignment and function description
>sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1 Back     alignment and function description
>sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=1 SV=1 Back     alignment and function description
>sp|O22584|RS14_LUPLU 40S ribosomal protein S14 OS=Lupinus luteus GN=RPS14 PE=2 SV=1 Back     alignment and function description
>sp|P46295|RS14_CHLRE 40S ribosomal protein S14 OS=Chlamydomonas reinhardtii GN=RPS14 PE=3 SV=1 Back     alignment and function description
>sp|P62264|RS14_MOUSE 40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=2 SV=3 Back     alignment and function description
>sp|P62263|RS14_HUMAN 40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3 Back     alignment and function description
>sp|P62265|RS14_CRIGR 40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
318083375150 putative ribosomal protein S14 [Wolffia 1.0 1.0 0.986 3e-80
224106672150 predicted protein [Populus trichocarpa] 1.0 1.0 0.986 9e-80
449462944150 PREDICTED: 40S ribosomal protein S14-2-l 1.0 1.0 0.98 4e-79
297740678 689 unnamed protein product [Vitis vinifera] 0.926 0.201 0.971 1e-73
194696114141 unknown [Zea mays] 0.94 1.0 0.957 1e-73
225464906150 PREDICTED: 40S ribosomal protein S14 [Vi 0.926 0.926 0.971 3e-73
192913024150 ribosomal protein S14 [Elaeis guineensis 0.926 0.926 0.971 3e-73
296084888191 unnamed protein product [Vitis vinifera] 0.926 0.727 0.971 3e-73
118481419150 unknown [Populus trichocarpa] 0.926 0.926 0.971 4e-73
255557317150 40S ribosomal protein S14, putative [Ric 0.926 0.926 0.964 6e-73
>gi|318083375|gb|ADV38313.1| putative ribosomal protein S14 [Wolffia arrhiza] Back     alignment and taxonomy information
 Score =  302 bits (773), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/150 (98%), Positives = 150/150 (100%)

Query: 1   MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEENVTLGPAVRDGEHVFGVAH+FASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEENVTLGPAVRDGEHVFGVAHVFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

Source: Wolffia arrhiza

Species: Wolffia arrhiza

Genus: Wolffia

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224106672|ref|XP_002314245.1| predicted protein [Populus trichocarpa] gi|118483965|gb|ABK93870.1| unknown [Populus trichocarpa] gi|222850653|gb|EEE88200.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449462944|ref|XP_004149195.1| PREDICTED: 40S ribosomal protein S14-2-like [Cucumis sativus] gi|449462948|ref|XP_004149197.1| PREDICTED: 40S ribosomal protein S14-2-like [Cucumis sativus] gi|449500886|ref|XP_004161220.1| PREDICTED: 40S ribosomal protein S14-2-like [Cucumis sativus] gi|449500891|ref|XP_004161222.1| PREDICTED: 40S ribosomal protein S14-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297740678|emb|CBI30860.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|194696114|gb|ACF82141.1| unknown [Zea mays] Back     alignment and taxonomy information
>gi|225464906|ref|XP_002274381.1| PREDICTED: 40S ribosomal protein S14 [Vitis vinifera] gi|147843327|emb|CAN80530.1| hypothetical protein VITISV_018475 [Vitis vinifera] Back     alignment and taxonomy information
>gi|192913024|gb|ACF06620.1| ribosomal protein S14 [Elaeis guineensis] Back     alignment and taxonomy information
>gi|296084888|emb|CBI28297.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|118481419|gb|ABK92652.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255557317|ref|XP_002519689.1| 40S ribosomal protein S14, putative [Ricinus communis] gi|223541106|gb|EEF42662.1| 40S ribosomal protein S14, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
TAIR|locus:2079914150 AT3G52580 [Arabidopsis thalian 0.926 0.926 0.841 2.2e-57
TAIR|locus:2080692150 AT3G11510 [Arabidopsis thalian 0.926 0.926 0.834 1.6e-56
TAIR|locus:2053501150 AT2G36160 [Arabidopsis thalian 0.926 0.926 0.827 6.8e-56
UNIPROTKB|Q5ZHW8151 RPS14 "Uncharacterized protein 0.926 0.920 0.771 1.9e-51
UNIPROTKB|F2Z4N1162 RPS14 "Uncharacterized protein 0.926 0.858 0.771 1.9e-51
UNIPROTKB|P62263151 RPS14 "40S ribosomal protein S 0.926 0.920 0.771 1.9e-51
UNIPROTKB|P62265151 RPS14 "40S ribosomal protein S 0.926 0.920 0.771 1.9e-51
MGI|MGI:98107151 Rps14 "ribosomal protein S14" 0.926 0.920 0.771 1.9e-51
UNIPROTKB|Q6PDV6151 Rps14 "RCG63012" [Rattus norve 0.926 0.920 0.771 1.9e-51
RGD|62025151 Rps14 "ribosomal protein S14" 0.926 0.920 0.764 4e-51
TAIR|locus:2079914 AT3G52580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 117/139 (84%), Positives = 124/139 (89%)

Query:     1 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
             MS+RKT+EPK ENVTLGPAVR+GE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct:     1 MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query:    61 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALAR 120
             VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA            AQSALRALAR
Sbjct:    61 VKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query:   121 SGMKIGRIEDVTPIPTDST 139
             SGMKIGRIEDVTPIPTDST
Sbjct:   121 SGMKIGRIEDVTPIPTDST 139
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS
GO:0005829 "cytosol" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0042545 "cell wall modification" evidence=RCA
TAIR|locus:2080692 AT3G11510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053501 AT2G36160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZHW8 RPS14 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4N1 RPS14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62263 RPS14 "40S ribosomal protein S14" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P62265 RPS14 "40S ribosomal protein S14" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms
MGI|MGI:98107 Rps14 "ribosomal protein S14" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6PDV6 Rps14 "RCG63012" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|62025 Rps14 "ribosomal protein S14" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7QBX2RS14B_ANOGANo assigned EC number0.83210.90660.8947yesno
Q6LXM9RS11_METMPNo assigned EC number0.57750.77330.9354yesno
Q6XI08RS14A_DROYANo assigned EC number0.83570.92660.9205N/Ano
A4FWL3RS11_METM5No assigned EC number0.57750.77330.9354yesno
P14130RS14_DROMENo assigned EC number0.83570.92660.9205yesno
P48150RS14_CAEELNo assigned EC number0.81810.86660.8552yesno
P27069RS14_KLULANo assigned EC number0.79830.79330.8686yesno
C6A1B2RS11_THESMNo assigned EC number0.64650.77330.8345yesno
Q46GC9RS11_METBFNo assigned EC number0.59160.80.9523yesno
A2SSV8RS11_METLZNo assigned EC number0.62060.77330.8854yesno
P19950RS141_MAIZENo assigned EC number0.95680.920.9261N/Ano
P19951RS142_MAIZENo assigned EC number0.95620.90660.9066N/Ano
A0B9L3RS11_METTPNo assigned EC number0.60620.84660.9844yesno
Q12ZR4RS11_METBUNo assigned EC number0.60330.80660.9603yesno
B6YSQ2RS11_THEONNo assigned EC number0.63790.77330.8345yesno
Q9SIH0RS141_ARATHNo assigned EC number0.91360.92660.9266yesno
P62264RS14_MOUSENo assigned EC number0.850.92660.9205yesno
P62265RS14_CRIGRNo assigned EC number0.850.92660.9205yesno
P62263RS14_HUMANNo assigned EC number0.850.92660.9205yesno
Q8U0E3RS11_PYRFUNo assigned EC number0.64650.77330.8467yesno
P19115RS14_NEUCRNo assigned EC number0.79850.92660.9266N/Ano
P48855RS14_PROCLNo assigned EC number0.78570.92660.9205N/Ano
Q5JJF3RS11_PYRKONo assigned EC number0.63790.77330.8285yesno
O22584RS14_LUPLUNo assigned EC number0.92800.92660.9266N/Ano
Q8PV17RS11_METMANo assigned EC number0.59160.80.9523yesno
Q2FT98RS11_METHJNo assigned EC number0.61150.80660.9236yesno
A6UPW6RS11_METVSNo assigned EC number0.56890.77330.9354yesno
P42036RS143_ARATHNo assigned EC number0.92800.92660.9266yesno
Q7QEH1RS14A_ANOGANo assigned EC number0.83210.90660.8947yesno
A3CWH8RS11_METMJNo assigned EC number0.63470.76660.8914yesno
Q54EG3RS14_DICDINo assigned EC number0.78080.94660.9342yesno
Q9XEK6RS14_TORRUNo assigned EC number0.89470.75330.8432N/Ano
Q96W53RS14_CANAXNo assigned EC number0.83620.77330.8656N/Ano
P19800RS14_TRYBBNo assigned EC number0.73070.86660.9027N/Ano
Q9YB55RS11_AERPENo assigned EC number0.65480.75330.8496yesno
O14150RS14_SCHPONo assigned EC number0.81450.82660.8920yesno
A7IAH6RS11_METB6No assigned EC number0.62930.77330.8787yesno
P13471RS14_RATNo assigned EC number0.84280.92660.9205yesno
Q18G55RS11_HALWDNo assigned EC number0.59820.780.8931yesno
Q8TRR0RS11_METACNo assigned EC number0.60.80.9523yesno
P39516RS14B_YEASTNo assigned EC number0.78990.79330.8623yesno
Q5UAM9RS14_BOMMONo assigned EC number0.82140.92660.9205N/Ano
A6VGQ8RS11_METM7No assigned EC number0.57750.77330.9354yesno
A6UW04RS11_META3No assigned EC number0.61660.80.9677yesno
P46295RS14_CHLRENo assigned EC number0.87400.90.8823N/Ano
P06367RS14A_YEASTNo assigned EC number0.78990.79330.8686yesno
Q0W1V4RS11_UNCMANo assigned EC number0.61290.82660.9393yesno
Q1HR24RS14_AEDAENo assigned EC number0.81420.92660.9205N/Ano
Q08699RS14_PODCANo assigned EC number0.83570.92660.9205N/Ano
Q9CAX6RS142_ARATHNo assigned EC number0.92080.92660.9266yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
PTZ00129149 PTZ00129, PTZ00129, 40S ribosomal protein S14; Pro 1e-90
PRK09607132 PRK09607, rps11p, 30S ribosomal protein S11P; Revi 6e-70
TIGR03628114 TIGR03628, arch_S11P, archaeal ribosomal protein S 5e-57
pfam00411109 pfam00411, Ribosomal_S11, Ribosomal protein S11 3e-47
COG0100129 COG0100, RpsK, Ribosomal protein S11 [Translation, 4e-46
TIGR03632108 TIGR03632, bact_S11, 30S ribosomal protein S11 2e-23
PRK05309128 PRK05309, PRK05309, 30S ribosomal protein S11; Val 4e-23
CHL00041116 CHL00041, rps11, ribosomal protein S11 2e-17
>gnl|CDD|185465 PTZ00129, PTZ00129, 40S ribosomal protein S14; Provisional Back     alignment and domain information 
 Score =  259 bits (663), Expect = 1e-90
 Identities = 123/149 (82%), Positives = 135/149 (90%), Gaps = 1/149 (0%)

Query: 1   MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 59
             ++ T+  K++ V TLGP V  GE VFGVAHIFASFNDTFIHVTDLSGRETLVR+TGGM
Sbjct: 1   SKKKATKMSKKQEVATLGPNVAKGELVFGVAHIFASFNDTFIHVTDLSGRETLVRVTGGM 60

Query: 60  KVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 119
           KVKADRDESSPYAAM+AAQDV+ RCKELGI ALHIKLRATGG +TKTPGPGAQ+ALRALA
Sbjct: 61  KVKADRDESSPYAAMMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALA 120

Query: 120 RSGMKIGRIEDVTPIPTDSTRRKGGRRGR 148
           R+G+KIGRIEDVTPIPTDSTRRKGGRRGR
Sbjct: 121 RAGLKIGRIEDVTPIPTDSTRRKGGRRGR 149

Length = 149
>gnl|CDD|236588 PRK09607, rps11p, 30S ribosomal protein S11P; Reviewed Back     alignment and domain information
>gnl|CDD|132667 TIGR03628, arch_S11P, archaeal ribosomal protein S11P Back     alignment and domain information
>gnl|CDD|189537 pfam00411, Ribosomal_S11, Ribosomal protein S11 Back     alignment and domain information
>gnl|CDD|223178 COG0100, RpsK, Ribosomal protein S11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|188357 TIGR03632, bact_S11, 30S ribosomal protein S11 Back     alignment and domain information
>gnl|CDD|180007 PRK05309, PRK05309, 30S ribosomal protein S11; Validated Back     alignment and domain information
>gnl|CDD|176982 CHL00041, rps11, ribosomal protein S11 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 150
PTZ00129149 40S ribosomal protein S14; Provisional 100.0
PRK09607132 rps11p 30S ribosomal protein S11P; Reviewed 100.0
PRK05309128 30S ribosomal protein S11; Validated 100.0
COG0100129 RpsK Ribosomal protein S11 [Translation, ribosomal 100.0
PF00411110 Ribosomal_S11: Ribosomal protein S11; InterPro: IP 100.0
TIGR03632108 bact_S11 30S ribosomal protein S11. This model des 100.0
TIGR03628114 arch_S11P archaeal ribosomal protein S11P. This mo 100.0
CHL00041116 rps11 ribosomal protein S11 100.0
PTZ00090233 40S ribosomal protein S11; Provisional 100.0
KOG0408190 consensus Mitochondrial/chloroplast ribosomal prot 100.0
KOG0407139 consensus 40S ribosomal protein S14 [Translation, 100.0
cd00432103 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is 97.93
PF00861119 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPr 97.66
PRK05593117 rplR 50S ribosomal protein L18; Reviewed 97.65
PRK08569193 rpl18p 50S ribosomal protein L18P; Reviewed 97.6
TIGR00060114 L18_bact ribosomal protein L18, bacterial type. Th 97.56
CHL00139109 rpl18 ribosomal protein L18; Validated 97.43
COG0256125 RplR Ribosomal protein L18 [Translation, ribosomal 96.85
PTZ00032211 60S ribosomal protein L18; Provisional 94.82
PTZ00069 300 60S ribosomal protein L5; Provisional 84.63
>PTZ00129 40S ribosomal protein S14; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-52  Score=323.22  Aligned_cols=137  Identities=88%  Similarity=1.306  Sum_probs=131.4

Q ss_pred             eeeecCCcccCCceeeeEEEEEccCCCeEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcE
Q 031952           12 ENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITA   91 (150)
Q Consensus        12 ~~~~~~~~~~~~~~~~~ilhI~~t~NNT~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi~~   91 (150)
                      .++.++|+..+..+..||+||++|+|||||||||+.|++++|+|||++|||+.++|+||||||.||++++++|.++||+.
T Consensus        13 ~~~~~~~~~~~~~~~~Gi~hI~as~NNTiItiTD~~G~~~~w~SsG~~gfKg~r~KsTpyAAq~aa~~~a~k~~~~Gi~~   92 (149)
T PTZ00129         13 EVATLGPNVAKGELVFGVAHIFASFNDTFIHVTDLSGRETLVRVTGGMKVKADRDESSPYAAMMAAQDVAARCKELGINA   92 (149)
T ss_pred             eeeecCCcccCCceeEEEEEEEcccCCeEEEEEcccCCEEEEEecCcceecccccCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence            34467777778889999999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             EEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEeccCCCCCCCCCCCCCCCC
Q 031952           92 LHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGR  148 (150)
Q Consensus        92 v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~TpiphNGcR~kK~RR~~  148 (150)
                      |+|+++|+||+.++|+|+||+++|++|+++||+|.+|+|+||||||||||||+||.|
T Consensus        93 v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~DvTPiPhNGcRppk~RR~r  149 (149)
T PTZ00129         93 LHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIEDVTPIPTDSTRRKGGRRGR  149 (149)
T ss_pred             EEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999986

>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed Back     alignment and domain information
>PRK05309 30S ribosomal protein S11; Validated Back     alignment and domain information
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>TIGR03632 bact_S11 30S ribosomal protein S11 Back     alignment and domain information
>TIGR03628 arch_S11P archaeal ribosomal protein S11P Back     alignment and domain information
>CHL00041 rps11 ribosomal protein S11 Back     alignment and domain information
>PTZ00090 40S ribosomal protein S11; Provisional Back     alignment and domain information
>KOG0408 consensus Mitochondrial/chloroplast ribosomal protein S11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0407 consensus 40S ribosomal protein S14 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit Back     alignment and domain information
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK05593 rplR 50S ribosomal protein L18; Reviewed Back     alignment and domain information
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed Back     alignment and domain information
>TIGR00060 L18_bact ribosomal protein L18, bacterial type Back     alignment and domain information
>CHL00139 rpl18 ribosomal protein L18; Validated Back     alignment and domain information
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00032 60S ribosomal protein L18; Provisional Back     alignment and domain information
>PTZ00069 60S ribosomal protein L5; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
3iz6_K150 Localization Of The Small Subunit Ribosomal Protein 3e-66
2zkq_k151 Structure Of A Mammalian Ribosomal 40s Subunit With 8e-58
2xzm_K151 Crystal Structure Of The Eukaryotic 40s Ribosomal S 3e-49
3j0l_K140 Core Of Mammalian 80s Pre-Ribosome In Complex With 1e-47
3izb_K137 Localization Of The Small Subunit Ribosomal Protein 4e-47
1s1h_K136 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 9e-47
3jyv_K125 Structure Of The 40s Rrna And Proteins And PE TRNA 2e-46
3zey_H144 High-resolution Cryo-electron Microscopy Structure 5e-41
3j20_M137 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-29
2gy9_K116 Structure Of The 30s Subunit Of A Pre-Translocation 2e-12
3fih_K117 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 2e-12
1p6g_K128 Real Space Refined Coordinates Of The 30s Subunit F 2e-12
1vs5_K129 Crystal Structure Of The Bacterial Ribosome From Es 2e-12
3bbn_K140 Homology Model For The Spinach Chloroplast 30s Subu 3e-07
1pns_K119 Crystal Structure Of A Streptomycin Dependent Ribos 7e-05
1i94_K128 Crystal Structures Of The Small Ribosomal Subunit W 7e-05
1fjg_K129 Structure Of The Thermus Thermophilus 30s Ribosomal 8e-05
>pdb|3IZ6|K Chain K, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 150 Back     alignment and structure 
Iteration: 1

 Score =  246 bits (628), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/139 (86%), Positives = 126/139 (90%)
Query: 1   MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MS+RKTREPKEENVTLGP VR+GE+VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALAR 120
           VKADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRA            AQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
Query: 121 SGMKIGRIEDVTPIPTDST 139
           SGMKIGRIEDVTP+PTDST
Sbjct: 121 SGMKIGRIEDVTPVPTDST 139
>pdb|2ZKQ|KK Chain k, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 151 Back     alignment and structure
>pdb|2XZM|K Chain K, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 151 Back     alignment and structure
>pdb|3J0L|K Chain K, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 140 Back     alignment and structure
>pdb|3IZB|K Chain K, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 137 Back     alignment and structure
>pdb|1S1H|K Chain K, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 136 Back     alignment and structure
>pdb|3JYV|K Chain K, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 125 Back     alignment and structure
>pdb|3ZEY|H Chain H, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 144 Back     alignment and structure
>pdb|3J20|M Chain M, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 137 Back     alignment and structure
>pdb|2GY9|K Chain K, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 116 Back     alignment and structure
>pdb|3FIH|K Chain K, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 117 Back     alignment and structure
>pdb|1P6G|K Chain K, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 128 Back     alignment and structure
>pdb|1VS5|K Chain K, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 129 Back     alignment and structure
>pdb|3BBN|K Chain K, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 140 Back     alignment and structure
>pdb|1PNS|K Chain K, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 119 Back     alignment and structure
>pdb|1I94|K Chain K, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 128 Back     alignment and structure
>pdb|1FJG|K Chain K, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 129 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
3u5c_O137 RP59A, 40S ribosomal protein S14-A; translation, r 1e-67
2xzm_K151 RPS14E; ribosome, translation; 3.93A {Tetrahymena 6e-66
3r8n_K117 30S ribosomal protein S11; protein biosynthesis, R 8e-49
3bbn_K140 Ribosomal protein S11; small ribosomal subunit, sp 3e-44
2vqe_K129 30S ribosomal protein S11, 30S ribosomal protein S 6e-44
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K* Length = 137 Back     alignment and structure
 Score =  200 bits (511), Expect = 1e-67
 Identities = 104/133 (78%), Positives = 122/133 (91%)

Query: 18  PAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAA 77
              RD   VFGVA I+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAA
Sbjct: 5   VQARDNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAA 64

Query: 78  QDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTD 137
           QDV+ +CKE+GITA+H+K+RATGG +TKTPGPG Q+ALRALARSG++IGRIEDVTP+P+D
Sbjct: 65  QDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSD 124

Query: 138 STRRKGGRRGRRL 150
           STR+KGGRRGRRL
Sbjct: 125 STRKKGGRRGRRL 137
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K* Length = 151 Back     alignment and structure
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 140 Back     alignment and structure
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ... Length = 129 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
2xzm_K151 RPS14E; ribosome, translation; 3.93A {Tetrahymena 100.0
3u5c_O137 RP59A, 40S ribosomal protein S14-A; translation, r 100.0
3j20_M137 30S ribosomal protein S11P; archaea, archaeal, KIN 100.0
3r8n_K117 30S ribosomal protein S11; protein biosynthesis, R 100.0
2vqe_K129 30S ribosomal protein S11, 30S ribosomal protein S 100.0
3bbn_K140 Ribosomal protein S11; small ribosomal subunit, sp 100.0
3r8s_O116 50S ribosomal protein L18; protein biosynthesis, R 97.26
3v2d_S112 50S ribosomal protein L18; ribosome associated inh 97.24
1vq8_N187 50S ribosomal protein L18P; ribosome 50S, protein- 96.84
1ovy_A120 50S ribosomal protein L18; ribosome; NMR {Geobacil 96.52
3j21_O203 50S ribosomal protein L18P; archaea, archaeal, KIN 96.47
3bbo_Q161 Ribosomal protein L18; large ribosomal subunit, sp 95.88
2zjr_L114 50S ribosomal protein L18; ribosome, large ribosom 95.87
2zkr_n 297 60S ribosomal protein L5; protein-RNA complex, 60S 95.14
4a17_M 301 RPL5, 60S ribosomal protein L5; eukaryotic ribosom 93.61
3u5e_D 297 60S ribosomal protein L5; translation, ribosome, r 93.21
3iz5_Q 304 60S ribosomal protein L5 (L18P); eukaryotic riboso 84.59
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K* Back     alignment and structure
Probab=100.00  E-value=1.4e-57  Score=351.24  Aligned_cols=150  Identities=77%  Similarity=1.148  Sum_probs=136.3

Q ss_pred             CCCCCCCCccceeeecCCc-ccCCceeeeEEEEEccCCCeEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHH
Q 031952            1 MSRRKTREPKEENVTLGPA-VRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQD   79 (150)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ilhI~~t~NNT~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~   79 (150)
                      |+.++..+..+++++|||+ +.++++..|++||++|+|||||||||++|++++|||||+++||++++|+||||||+||++
T Consensus         1 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~gi~hI~asfNNTiVtiTD~~G~~~~~~ssgg~~~k~~r~ksTpyAAq~aa~~   80 (151)
T 2xzm_K            1 MAPKKTAPVQKEVISYGPPNVGANENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAID   80 (151)
T ss_dssp             -----------CCCCCSCSCCCTTCCCEEEEEEEBCSSCBCCEEECTTCCSEEEECCHHHHCSSGGGGSCHHHHHHHHHH
T ss_pred             CCCccccccccceeecCCccccCCCeeeeEEEEEccCCCEEEEEECCCCCEEEEEecCcceEeCCCCcCCHHHHHHHHHH
Confidence            5666666655577899999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEeccCCCCCCCCCCCCCCCCCC
Q 031952           80 VSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL  150 (150)
Q Consensus        80 i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~TpiphNGcR~kK~RR~~~~  150 (150)
                      ++++|+++||+.|+|+|+|+||+++||+|+||+++|++|+.+|++|.+|+|+||||||||||||+||+||+
T Consensus        81 ~a~~a~e~Gi~~v~V~vkG~gg~~~kgpG~GresairaL~~~GlkI~~I~DvTpiPhNGcRp~K~RRvr~~  151 (151)
T 2xzm_K           81 VVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREGGRRGRRL  151 (151)
T ss_dssp             HHHHHHHHTCCEEEEEEECCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEECCCCCSSCCCCSSCTTCSCC
T ss_pred             HHHHHHHcCCeEEEEEEEcCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEeCCCCCCCCCCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999996
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K* Back     alignment and structure
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ... Back     alignment and structure
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ... Back     alignment and structure
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ... Back     alignment and structure
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Back     alignment and structure
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Back     alignment and structure
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P Back     alignment and structure
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M Back     alignment and structure
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 150
d2qalk1117 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escheri 6e-37
d2uubk1119 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus 2e-33
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]} Length = 117 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Escherichia coli [TaxId: 562]

 Score =  120 bits (303), Expect = 6e-37
 Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 9/119 (7%)

Query: 28  GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKEL 87
           GVAHI ASFN+T + +TD  G        GG        +S+P+AA +AA+  +   KE 
Sbjct: 7   GVAHIHASFNNTIVTITDRQGNALGWATAGGS-GFRGSRKSTPFAAQVAAERCADAVKEY 65

Query: 88  GITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146
           GI  L + +        K PGPG +S +RAL  +G +I  I DVTPIP +  R    RR
Sbjct: 66  GIKNLEVMV--------KGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRR 116
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
d2qalk1117 Ribosomal protein S11 {Escherichia coli [TaxId: 56 100.0
d2uubk1119 Ribosomal protein S11 {Thermus thermophilus [TaxId 100.0
d1vqon1186 Ribosomal protein L18 (L18p) {Archaeon Haloarcula 97.42
d1ovya_97 Ribosomal protein L18 (L18p) {Bacillus stearotherm 97.21
d2gycm1113 Ribosomal protein L18 (L18p) {Escherichia coli [Ta 96.59
d2j01s186 Ribosomal protein L18 (L18p) {Thermus thermophilus 96.3
d2zjrl1104 Ribosomal protein L18 (L18p) {Deinococcus radiodur 93.99
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-49  Score=291.06  Aligned_cols=116  Identities=41%  Similarity=0.649  Sum_probs=112.9

Q ss_pred             CceeeeEEEEEccCCCeEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCC
Q 031952           23 GEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGN  102 (150)
Q Consensus        23 ~~~~~~ilhI~~t~NNT~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~  102 (150)
                      +++..||+||++|+|||||||||++|+++.|+|+|++||++.+ |+|||||+++|+.++++++++||+.|+|++      
T Consensus         2 ~~~~~Gi~hI~~t~NNTiitlTD~~G~~~~~~S~G~~gfkg~~-K~t~~Aa~~~a~~~~~~~~~~gi~~v~V~~------   74 (117)
T d2qalk1           2 KQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSR-KSTPFAAQVAAERCADAVKEYGIKNLEVMV------   74 (117)
T ss_dssp             CCCCEEEEEEECCSSCCEEEEEETTSCEEEEEETTTSSCCHHH-HTSHHHHHHHHHHHHHHHGGGTCCEEEEEE------
T ss_pred             ccccceEEEEEecCCCEEEEEECCCCCEEEEEecccccccccc-ccchHHHHHHHHHHHHHHHHcCCcEEEEEE------
Confidence            5678899999999999999999999999999999999999998 899999999999999999999999999999      


Q ss_pred             cccCCCCChHHHHHHHHhCCCeEEEEEeccCCCCCCCCCCCCCCC
Q 031952          103 KTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRG  147 (150)
Q Consensus       103 ~~kG~G~gr~~~lk~L~~~gl~I~~I~D~TpiphNGcR~kK~RR~  147 (150)
                        +|+|+||+++|++|+.+|++|.+|+|+||+|||||||||+||+
T Consensus        75 --kG~G~GR~~air~l~~~gl~I~~I~D~TpiphnGcRp~K~RRv  117 (117)
T d2qalk1          75 --KGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV  117 (117)
T ss_dssp             --ECCSTTTTHHHHHHHHTTCEEEEEEECCCCCSSCSCCCCCCCC
T ss_pred             --eCCCCchHHHHHHHHhCCCEEEEEEECCCCCCCCCCCCCCCCC
Confidence              9999999999999999999999999999999999999999985
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure